Query 001511
Match_columns 1064
No_of_seqs 722 out of 4277
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 8E-77 1.7E-81 697.8 61.2 530 85-650 132-678 (716)
2 KOG0060 Long-chain acyl-CoA tr 100.0 7.6E-77 1.6E-81 677.5 51.2 630 24-661 2-653 (659)
3 KOG0064 Peroxisomal long-chain 100.0 1.5E-78 3.2E-83 680.8 20.1 316 731-1046 90-413 (728)
4 TIGR00954 3a01203 Peroxysomal 100.0 5.4E-70 1.2E-74 669.9 73.0 562 85-654 76-658 (659)
5 COG2274 SunT ABC-type bacterio 100.0 3.9E-67 8.5E-72 638.5 65.8 529 87-650 141-683 (709)
6 KOG0055 Multidrug/pheromone ex 100.0 1.4E-66 3.1E-71 640.8 62.2 535 86-650 650-1200(1228)
7 PRK11174 cysteine/glutathione 100.0 3.8E-66 8.1E-71 631.2 65.4 532 88-650 10-559 (588)
8 TIGR00958 3a01208 Conjugate Tr 100.0 4.5E-65 9.7E-70 632.9 67.5 530 85-650 146-689 (711)
9 COG4178 ABC-type uncharacteriz 100.0 4.2E-65 9.1E-70 599.0 59.7 544 87-653 25-592 (604)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.2E-64 1.3E-68 624.0 68.6 535 87-650 141-687 (710)
11 TIGR01193 bacteriocin_ABC ABC- 100.0 6.2E-64 1.4E-68 623.7 68.2 531 86-650 142-684 (708)
12 TIGR02868 CydC thiol reductant 100.0 8.9E-64 1.9E-68 603.0 65.9 515 89-635 2-529 (529)
13 PRK11160 cysteine/glutathione 100.0 1.3E-63 2.7E-68 606.6 67.0 529 88-650 4-549 (574)
14 KOG0055 Multidrug/pheromone ex 100.0 5.8E-64 1.3E-68 617.7 64.1 531 86-650 13-563 (1228)
15 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-63 5.9E-68 615.9 68.3 524 88-650 123-660 (686)
16 TIGR03375 type_I_sec_LssB type 100.0 3.5E-63 7.6E-68 615.7 68.2 529 87-650 134-675 (694)
17 PRK11176 lipid transporter ATP 100.0 1.1E-62 2.3E-67 600.1 67.4 532 84-650 9-554 (582)
18 COG1132 MdlB ABC-type multidru 100.0 1.1E-62 2.3E-67 598.2 65.8 524 88-650 4-539 (567)
19 PTZ00265 multidrug resistance 100.0 5E-61 1.1E-65 628.8 84.5 533 87-650 46-655 (1466)
20 PRK10790 putative multidrug tr 100.0 5.2E-62 1.1E-66 595.2 67.7 533 82-650 5-550 (592)
21 TIGR02857 CydD thiol reductant 100.0 1.7E-61 3.6E-66 583.2 65.8 511 107-647 5-529 (529)
22 PRK13657 cyclic beta-1,2-gluca 100.0 2E-61 4.2E-66 589.6 66.9 528 86-650 5-545 (588)
23 KOG0064 Peroxisomal long-chain 100.0 1.9E-63 4.2E-68 559.1 44.7 578 77-660 90-694 (728)
24 TIGR02203 MsbA_lipidA lipid A 100.0 2.5E-61 5.4E-66 586.8 66.2 527 89-650 3-543 (571)
25 TIGR01192 chvA glucan exporter 100.0 5E-61 1.1E-65 584.9 68.2 527 87-650 6-545 (585)
26 COG4987 CydC ABC-type transpor 100.0 1.4E-61 3.1E-66 551.6 58.0 528 91-650 4-548 (573)
27 TIGR01846 type_I_sec_HlyB type 100.0 4.3E-61 9.3E-66 596.8 66.9 527 87-650 126-667 (694)
28 PTZ00265 multidrug resistance 100.0 5.6E-61 1.2E-65 628.3 67.7 529 87-649 812-1433(1466)
29 TIGR02204 MsbA_rel ABC transpo 100.0 4.9E-60 1.1E-64 576.1 66.9 530 87-650 5-550 (576)
30 COG4988 CydD ABC-type transpor 100.0 2.3E-59 5.1E-64 542.1 63.7 511 113-651 8-531 (559)
31 PRK10789 putative multidrug tr 100.0 2.1E-59 4.5E-64 569.3 62.9 504 118-650 8-525 (569)
32 KOG0057 Mitochondrial Fe/S clu 100.0 4E-59 8.6E-64 531.7 56.4 536 85-651 10-562 (591)
33 TIGR01842 type_I_sec_PrtD type 100.0 3.7E-58 8E-63 555.8 65.7 506 107-650 8-529 (544)
34 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-57 2.6E-62 552.2 61.4 521 88-650 5-546 (555)
35 TIGR00957 MRP_assoc_pro multi 100.0 3.5E-57 7.6E-62 598.0 64.2 449 177-650 1034-1495(1522)
36 PLN03130 ABC transporter C fam 100.0 9.1E-57 2E-61 593.7 66.6 460 167-650 972-1448(1622)
37 KOG0056 Heavy metal exporter H 100.0 2.7E-59 5.8E-64 520.4 32.9 534 86-650 196-748 (790)
38 PTZ00243 ABC transporter; Prov 100.0 3.2E-56 6.9E-61 587.8 67.5 454 179-650 1029-1520(1560)
39 PLN03232 ABC transporter C fam 100.0 6E-56 1.3E-60 585.6 65.0 456 173-650 975-1445(1495)
40 KOG0060 Long-chain acyl-CoA tr 100.0 9.4E-60 2E-64 537.7 18.2 311 735-1047 58-369 (659)
41 PRK10522 multidrug transporter 100.0 5.7E-55 1.2E-59 528.3 60.8 509 91-650 4-525 (547)
42 PLN03232 ABC transporter C fam 100.0 5.5E-52 1.2E-56 548.0 91.0 496 107-650 303-815 (1495)
43 PLN03130 ABC transporter C fam 100.0 8.7E-52 1.9E-56 546.5 86.9 499 107-650 303-815 (1622)
44 TIGR01271 CFTR_protein cystic 100.0 2.3E-53 4.9E-58 560.3 64.8 456 171-650 948-1427(1490)
45 PF06472 ABC_membrane_2: ABC t 100.0 2.8E-56 6E-61 496.1 21.1 278 736-1013 4-281 (281)
46 KOG0054 Multidrug resistance-a 100.0 1.1E-52 2.3E-57 529.6 54.0 471 148-650 862-1349(1381)
47 TIGR00957 MRP_assoc_pro multi 100.0 2.4E-49 5.2E-54 523.7 85.4 506 107-650 319-837 (1522)
48 COG4618 ArpD ABC-type protease 100.0 4.9E-51 1.1E-55 461.2 54.2 492 119-650 37-547 (580)
49 COG5265 ATM1 ABC-type transpor 100.0 8.5E-52 1.8E-56 458.3 36.5 447 179-650 13-473 (497)
50 TIGR01271 CFTR_protein cystic 100.0 2.5E-46 5.5E-51 493.7 82.1 495 110-650 85-623 (1490)
51 PTZ00243 ABC transporter; Prov 100.0 9.8E-46 2.1E-50 488.5 87.2 508 107-650 246-857 (1560)
52 COG0444 DppD ABC-type dipeptid 100.0 6.1E-52 1.3E-56 453.4 18.3 272 445-765 2-313 (316)
53 COG1126 GlnQ ABC-type polar am 100.0 2.2E-50 4.8E-55 416.1 17.9 224 444-715 2-238 (240)
54 COG1124 DppF ABC-type dipeptid 100.0 1.4E-49 3.1E-54 417.9 19.2 228 444-720 3-249 (252)
55 COG1135 AbcC ABC-type metal io 100.0 2.8E-49 6.1E-54 426.4 15.9 227 444-717 1-246 (339)
56 KOG0054 Multidrug resistance-a 100.0 1.3E-43 2.7E-48 447.7 69.1 496 113-650 209-718 (1381)
57 PRK15079 oligopeptide ABC tran 100.0 3.7E-46 8.1E-51 423.4 23.5 275 442-764 6-325 (331)
58 PRK11308 dppF dipeptide transp 100.0 6.1E-46 1.3E-50 421.2 24.1 275 443-765 4-317 (327)
59 COG1116 TauB ABC-type nitrate/ 100.0 5.7E-46 1.2E-50 394.2 21.9 199 444-651 3-208 (248)
60 PRK11022 dppD dipeptide transp 100.0 2.6E-45 5.6E-50 416.1 23.1 274 444-765 3-315 (326)
61 COG4608 AppF ABC-type oligopep 100.0 6.9E-46 1.5E-50 398.3 16.4 234 443-753 3-262 (268)
62 PRK09473 oppD oligopeptide tra 100.0 6.1E-45 1.3E-49 413.5 22.7 276 442-765 10-323 (330)
63 COG1123 ATPase components of v 100.0 2.2E-45 4.7E-50 427.9 18.6 233 441-720 277-537 (539)
64 COG1117 PstB ABC-type phosphat 100.0 1.4E-45 3.1E-50 378.6 14.4 228 443-714 6-249 (253)
65 COG1136 SalX ABC-type antimicr 100.0 1.8E-44 3.8E-49 382.6 19.8 199 445-651 2-219 (226)
66 PRK15093 antimicrobial peptide 100.0 3.2E-44 6.9E-49 408.1 23.2 273 444-765 3-322 (330)
67 COG1125 OpuBA ABC-type proline 100.0 7.7E-45 1.7E-49 381.4 15.7 198 444-650 1-212 (309)
68 COG2884 FtsE Predicted ATPase 100.0 2.2E-44 4.7E-49 363.9 17.2 199 444-650 1-213 (223)
69 COG1123 ATPase components of v 100.0 1.7E-43 3.8E-48 412.0 20.6 233 443-722 4-264 (539)
70 COG1127 Ttg2A ABC-type transpo 100.0 4E-43 8.6E-48 367.5 20.2 200 442-650 6-222 (263)
71 COG1120 FepC ABC-type cobalami 100.0 5.6E-43 1.2E-47 377.9 21.2 198 444-650 2-215 (258)
72 COG4172 ABC-type uncharacteriz 100.0 6.9E-43 1.5E-47 384.7 20.7 229 442-718 274-532 (534)
73 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.7E-42 3.7E-47 372.4 22.4 199 443-650 3-215 (254)
74 TIGR02314 ABC_MetN D-methionin 100.0 8.3E-43 1.8E-47 396.8 20.0 199 444-650 1-217 (343)
75 COG3842 PotA ABC-type spermidi 100.0 1.2E-42 2.5E-47 390.5 17.6 199 443-650 4-213 (352)
76 COG3839 MalK ABC-type sugar tr 100.0 2.8E-42 6.1E-47 385.6 20.0 197 444-649 3-209 (338)
77 COG3638 ABC-type phosphate/pho 100.0 2.4E-42 5.2E-47 360.8 17.9 199 444-650 3-224 (258)
78 COG1122 CbiO ABC-type cobalt t 100.0 5.4E-42 1.2E-46 369.6 19.6 200 443-650 2-215 (235)
79 PRK10261 glutathione transport 100.0 1.8E-41 3.8E-46 415.7 24.3 271 443-765 312-614 (623)
80 PRK11650 ugpC glycerol-3-phosp 100.0 3.2E-41 7E-46 386.4 21.1 199 444-650 3-211 (356)
81 TIGR00960 3a0501s02 Type II (G 100.0 3.6E-41 7.8E-46 360.7 20.1 199 444-650 1-214 (216)
82 COG4172 ABC-type uncharacteriz 100.0 2.7E-41 5.9E-46 372.2 18.3 231 442-719 4-264 (534)
83 COG1118 CysA ABC-type sulfate/ 100.0 4.8E-41 1E-45 361.8 17.7 198 444-650 2-214 (345)
84 PRK11432 fbpC ferric transport 100.0 9.9E-41 2.1E-45 381.5 20.7 200 442-650 4-213 (351)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-40 2.6E-45 357.0 19.9 198 445-650 1-216 (218)
86 cd03226 ABC_cobalt_CbiO_domain 100.0 3.7E-40 8.1E-45 350.2 20.8 193 446-650 1-202 (205)
87 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.8E-40 1.1E-44 353.0 21.6 197 445-649 1-207 (220)
88 PRK13647 cbiO cobalt transport 100.0 4.2E-40 9.1E-45 365.4 20.7 199 444-650 4-214 (274)
89 TIGR02673 FtsE cell division A 100.0 3.7E-40 8.1E-45 352.2 19.6 199 444-650 1-213 (214)
90 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-40 8.3E-45 357.3 19.9 197 445-650 1-213 (235)
91 TIGR03265 PhnT2 putative 2-ami 100.0 2.8E-40 6.1E-45 378.3 19.7 198 444-650 4-211 (353)
92 cd03259 ABC_Carb_Solutes_like 100.0 3.7E-40 8E-45 352.1 19.3 197 445-650 1-207 (213)
93 cd03296 ABC_CysA_sulfate_impor 100.0 6E-40 1.3E-44 356.8 21.2 198 444-650 2-213 (239)
94 PRK11153 metN DL-methionine tr 100.0 4E-40 8.6E-45 376.3 20.7 199 444-650 1-217 (343)
95 COG4181 Predicted ABC-type tra 100.0 3.8E-40 8.2E-45 327.3 17.4 200 443-650 5-222 (228)
96 PRK09452 potA putrescine/sperm 100.0 4.7E-40 1E-44 378.5 20.9 200 442-650 12-221 (375)
97 PRK10851 sulfate/thiosulfate t 100.0 5.9E-40 1.3E-44 375.6 21.4 198 444-650 2-213 (353)
98 cd03292 ABC_FtsE_transporter F 100.0 5.2E-40 1.1E-44 350.9 19.4 198 445-650 1-212 (214)
99 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-39 2.7E-44 361.0 23.1 199 444-650 2-212 (275)
100 cd03225 ABC_cobalt_CbiO_domain 100.0 5.1E-40 1.1E-44 350.4 18.7 197 446-650 1-210 (211)
101 cd03235 ABC_Metallic_Cations A 100.0 8.6E-40 1.9E-44 349.3 20.2 195 446-649 1-207 (213)
102 PRK14257 phosphate ABC transpo 100.0 1E-39 2.2E-44 370.5 21.6 206 441-650 77-300 (329)
103 PRK11629 lolD lipoprotein tran 100.0 1.6E-39 3.4E-44 352.2 21.7 200 443-650 4-221 (233)
104 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-39 3E-44 349.4 21.0 198 445-650 2-217 (221)
105 PRK13650 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 362.9 20.9 199 444-650 4-216 (279)
106 COG3840 ThiQ ABC-type thiamine 100.0 8.1E-40 1.8E-44 328.2 17.6 195 445-650 2-206 (231)
107 PRK10908 cell division protein 100.0 1.8E-39 3.9E-44 349.1 21.2 199 444-650 1-213 (222)
108 PRK13637 cbiO cobalt transport 100.0 1.3E-39 2.8E-44 363.7 20.9 198 445-650 3-221 (287)
109 cd03266 ABC_NatA_sodium_export 100.0 1.1E-39 2.3E-44 349.6 19.4 198 445-650 2-212 (218)
110 PRK13631 cbiO cobalt transport 100.0 1.8E-39 3.8E-44 367.4 21.9 201 442-650 19-252 (320)
111 PRK11607 potG putrescine trans 100.0 1.5E-39 3.3E-44 374.8 21.6 200 442-650 17-226 (377)
112 cd03301 ABC_MalK_N The N-termi 100.0 2E-39 4.3E-44 346.3 20.4 197 445-650 1-207 (213)
113 cd03263 ABC_subfamily_A The AB 100.0 1.4E-39 3E-44 349.2 19.3 198 445-650 1-208 (220)
114 TIGR02315 ABC_phnC phosphonate 100.0 2.5E-39 5.3E-44 352.5 21.4 199 444-650 1-222 (243)
115 PRK14250 phosphate ABC transpo 100.0 3.4E-39 7.3E-44 351.5 22.5 194 444-650 3-208 (241)
116 TIGR02769 nickel_nikE nickel i 100.0 2.1E-39 4.6E-44 358.0 20.9 199 444-650 2-227 (265)
117 PRK11248 tauB taurine transpor 100.0 4.5E-39 9.9E-44 353.5 22.8 197 444-649 1-204 (255)
118 cd03256 ABC_PhnC_transporter A 100.0 3.2E-39 6.9E-44 351.0 21.3 198 445-650 1-221 (241)
119 PRK10584 putative ABC transpor 100.0 4.1E-39 8.8E-44 347.6 21.9 200 443-650 5-222 (228)
120 cd03223 ABCD_peroxisomal_ALDP 100.0 5.2E-39 1.1E-43 330.8 21.4 166 445-653 1-166 (166)
121 cd03265 ABC_DrrA DrrA is the A 100.0 2.1E-39 4.6E-44 348.1 19.2 197 445-650 1-208 (220)
122 PRK13643 cbiO cobalt transport 100.0 2.3E-39 5E-44 361.9 20.2 199 444-650 1-220 (288)
123 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-39 5E-44 371.4 20.4 199 443-650 4-215 (362)
124 cd03269 ABC_putative_ATPase Th 100.0 3.3E-39 7.3E-44 344.0 19.9 197 445-650 1-204 (210)
125 PRK11247 ssuB aliphatic sulfon 100.0 8E-39 1.7E-43 351.8 23.5 193 443-650 11-210 (257)
126 PRK14273 phosphate ABC transpo 100.0 3.7E-39 8E-44 353.7 20.8 199 443-650 6-225 (254)
127 PRK13651 cobalt transporter AT 100.0 3.3E-39 7.1E-44 363.1 20.9 198 445-650 3-241 (305)
128 cd03264 ABC_drug_resistance_li 100.0 2.8E-39 6.1E-44 344.8 19.2 196 445-650 1-205 (211)
129 PRK13537 nodulation ABC transp 100.0 3.3E-39 7.1E-44 363.4 20.6 199 443-650 6-214 (306)
130 TIGR01186 proV glycine betaine 100.0 1.7E-39 3.7E-44 371.8 18.4 187 456-650 4-206 (363)
131 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-39 4.9E-44 358.6 18.7 196 446-650 26-237 (269)
132 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-38 2.4E-43 346.2 23.7 200 445-650 1-212 (237)
133 PRK13636 cbiO cobalt transport 100.0 4.8E-39 1E-43 358.5 21.2 200 443-650 4-218 (283)
134 cd03268 ABC_BcrA_bacitracin_re 100.0 5.8E-39 1.3E-43 341.6 20.9 193 445-650 1-202 (208)
135 TIGR00972 3a0107s01c2 phosphat 100.0 4.1E-39 9E-44 351.9 20.2 198 444-650 1-219 (247)
136 PRK13644 cbiO cobalt transport 100.0 4.5E-39 9.7E-44 357.2 20.7 199 444-650 1-211 (274)
137 PRK13646 cbiO cobalt transport 100.0 3.8E-39 8.3E-44 359.8 19.9 198 445-650 3-222 (286)
138 PRK13635 cbiO cobalt transport 100.0 5.6E-39 1.2E-43 357.2 21.1 200 443-650 4-216 (279)
139 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-38 2.7E-43 343.8 23.0 201 444-650 2-213 (229)
140 PRK13634 cbiO cobalt transport 100.0 4.3E-39 9.3E-44 360.1 20.0 198 445-650 3-222 (290)
141 PRK14268 phosphate ABC transpo 100.0 4.7E-39 1E-43 353.8 20.0 200 442-650 10-229 (258)
142 cd03258 ABC_MetN_methionine_tr 100.0 5.7E-39 1.2E-43 347.6 20.2 199 444-650 1-217 (233)
143 PRK11000 maltose/maltodextrin 100.0 5.6E-39 1.2E-43 370.0 21.2 198 444-650 3-210 (369)
144 cd03260 ABC_PstB_phosphate_tra 100.0 6.6E-39 1.4E-43 345.7 20.5 199 445-650 1-216 (227)
145 cd03262 ABC_HisP_GlnQ_permease 100.0 6E-39 1.3E-43 342.5 19.8 197 445-650 1-211 (213)
146 PRK14259 phosphate ABC transpo 100.0 8.6E-39 1.9E-43 354.0 21.6 198 442-649 11-228 (269)
147 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.6E-39 1.4E-43 348.0 20.2 198 444-650 1-208 (236)
148 cd03244 ABCC_MRP_domain2 Domai 100.0 1.9E-38 4.1E-43 340.7 23.5 200 444-650 2-213 (221)
149 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-38 4E-43 340.5 23.4 201 444-650 2-214 (220)
150 PRK13632 cbiO cobalt transport 100.0 7.5E-39 1.6E-43 354.8 20.7 200 443-650 6-218 (271)
151 PRK09493 glnQ glutamine ABC tr 100.0 7.5E-39 1.6E-43 348.3 20.3 198 444-650 1-212 (240)
152 cd03219 ABC_Mj1267_LivG_branch 100.0 5E-39 1.1E-43 348.6 18.8 197 445-650 1-219 (236)
153 TIGR03005 ectoine_ehuA ectoine 100.0 6.9E-39 1.5E-43 351.2 20.2 197 445-650 1-223 (252)
154 COG1131 CcmA ABC-type multidru 100.0 6.1E-39 1.3E-43 358.6 19.4 199 444-650 4-213 (293)
155 cd03218 ABC_YhbG The ABC trans 100.0 7.5E-39 1.6E-43 346.3 19.5 197 445-650 1-209 (232)
156 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.5E-38 3.2E-43 339.2 21.4 195 445-650 1-205 (211)
157 TIGR01288 nodI ATP-binding ABC 100.0 9E-39 2E-43 359.6 20.4 199 443-650 3-211 (303)
158 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-38 3.3E-43 342.7 21.2 199 444-650 1-222 (228)
159 PRK11264 putative amino-acid A 100.0 8.7E-39 1.9E-43 349.8 19.6 198 444-650 3-220 (250)
160 PRK13652 cbiO cobalt transport 100.0 1.2E-38 2.6E-43 354.3 20.9 199 444-650 3-214 (277)
161 PRK13633 cobalt transporter AT 100.0 1.3E-38 2.7E-43 354.6 21.2 200 443-650 3-220 (280)
162 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-38 2.3E-43 347.7 19.9 198 445-650 1-212 (242)
163 COG4175 ProV ABC-type proline/ 100.0 4.6E-39 9.9E-44 346.4 16.7 184 459-650 42-241 (386)
164 PRK10247 putative ABC transpor 100.0 2E-38 4.4E-43 341.9 21.6 198 443-651 6-214 (225)
165 PRK10744 pstB phosphate transp 100.0 1.7E-38 3.6E-43 349.9 21.3 200 442-650 11-231 (260)
166 COG4555 NatA ABC-type Na+ tran 100.0 2E-39 4.3E-44 330.4 12.7 199 444-650 1-209 (245)
167 cd03250 ABCC_MRP_domain1 Domai 100.0 5.4E-38 1.2E-42 333.4 24.1 192 445-650 1-203 (204)
168 PRK14269 phosphate ABC transpo 100.0 1.6E-38 3.5E-43 347.2 20.3 202 444-650 2-217 (246)
169 cd03253 ABCC_ATM1_transporter 100.0 4.5E-38 9.8E-43 341.1 23.2 200 445-650 1-211 (236)
170 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-38 5.1E-43 366.6 22.3 198 444-650 3-215 (402)
171 cd03224 ABC_TM1139_LivF_branch 100.0 1.8E-38 3.9E-43 340.9 19.9 195 445-650 1-208 (222)
172 PRK10619 histidine/lysine/argi 100.0 2.2E-38 4.7E-43 348.4 20.5 200 442-650 3-228 (257)
173 PRK10070 glycine betaine trans 100.0 1.9E-38 4E-43 367.2 20.9 184 459-650 42-241 (400)
174 PRK13536 nodulation factor exp 100.0 2E-38 4.3E-43 361.3 20.6 199 443-650 40-248 (340)
175 PRK13638 cbiO cobalt transport 100.0 1.8E-38 3.9E-43 351.7 19.6 198 444-650 1-212 (271)
176 PRK13639 cbiO cobalt transport 100.0 2.1E-38 4.5E-43 352.0 20.1 199 444-650 1-213 (275)
177 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-38 2.5E-43 338.6 17.3 192 447-647 1-206 (206)
178 PRK11831 putative ABC transpor 100.0 2.4E-38 5.2E-43 350.4 20.3 199 443-650 6-220 (269)
179 PRK13640 cbiO cobalt transport 100.0 2.6E-38 5.5E-43 352.5 20.5 200 443-650 4-219 (282)
180 PRK13641 cbiO cobalt transport 100.0 2.4E-38 5.1E-43 353.6 20.1 199 444-650 2-221 (287)
181 PRK14243 phosphate transporter 100.0 3.1E-38 6.8E-43 348.6 20.6 201 443-649 9-225 (264)
182 cd03251 ABCC_MsbA MsbA is an e 100.0 6.7E-38 1.4E-42 339.3 22.8 200 445-650 1-212 (234)
183 PRK13642 cbiO cobalt transport 100.0 3.5E-38 7.6E-43 350.5 20.9 199 444-650 4-216 (277)
184 PRK14256 phosphate ABC transpo 100.0 4.5E-38 9.7E-43 344.8 21.4 199 443-650 3-223 (252)
185 PRK13648 cbiO cobalt transport 100.0 3.4E-38 7.4E-43 349.2 20.5 200 443-650 6-218 (269)
186 TIGR01277 thiQ thiamine ABC tr 100.0 5.5E-38 1.2E-42 335.6 21.4 195 445-650 1-205 (213)
187 PRK13649 cbiO cobalt transport 100.0 3.3E-38 7.2E-43 351.2 20.0 198 445-650 3-221 (280)
188 PRK10575 iron-hydroxamate tran 100.0 7.4E-38 1.6E-42 345.8 22.5 200 442-650 9-224 (265)
189 PRK14247 phosphate ABC transpo 100.0 4.1E-38 8.8E-43 344.6 20.3 198 444-650 3-221 (250)
190 PRK13645 cbiO cobalt transport 100.0 3.8E-38 8.2E-43 352.3 20.3 200 443-650 5-227 (289)
191 PRK14235 phosphate transporter 100.0 5E-38 1.1E-42 347.5 21.0 200 442-650 17-238 (267)
192 cd03248 ABCC_TAP TAP, the Tran 100.0 1.1E-37 2.3E-42 336.2 23.0 203 442-650 9-224 (226)
193 PRK13548 hmuV hemin importer A 100.0 8.2E-38 1.8E-42 344.1 22.6 198 444-650 2-217 (258)
194 TIGR03415 ABC_choXWV_ATP choli 100.0 3.3E-38 7.2E-43 362.8 20.2 186 457-650 36-241 (382)
195 PRK14274 phosphate ABC transpo 100.0 5E-38 1.1E-42 345.8 20.7 200 442-650 10-230 (259)
196 PRK15112 antimicrobial peptide 100.0 5.5E-38 1.2E-42 347.2 20.8 200 443-650 3-226 (267)
197 PRK14248 phosphate ABC transpo 100.0 7.5E-38 1.6E-42 346.2 21.7 200 442-650 19-239 (268)
198 PRK14241 phosphate transporter 100.0 4.5E-38 9.8E-43 346.0 19.8 197 444-649 4-222 (258)
199 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-37 2.2E-42 338.8 22.3 200 445-650 1-213 (238)
200 PRK14245 phosphate ABC transpo 100.0 6.9E-38 1.5E-42 342.9 20.8 199 443-650 2-221 (250)
201 TIGR03411 urea_trans_UrtD urea 100.0 8.1E-38 1.8E-42 340.5 21.3 198 444-650 2-218 (242)
202 PRK14251 phosphate ABC transpo 100.0 6.2E-38 1.4E-42 343.3 20.3 198 444-650 4-222 (251)
203 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-38 1E-42 353.6 19.8 198 444-650 2-208 (301)
204 COG4525 TauB ABC-type taurine 100.0 2.5E-38 5.4E-43 320.3 15.7 205 444-656 3-215 (259)
205 PRK11124 artP arginine transpo 100.0 7.3E-38 1.6E-42 341.0 20.6 198 444-650 2-217 (242)
206 TIGR00968 3a0106s01 sulfate AB 100.0 6.5E-38 1.4E-42 340.6 20.0 197 445-650 1-207 (237)
207 PRK14237 phosphate transporter 100.0 8.3E-38 1.8E-42 345.7 21.1 200 442-650 18-238 (267)
208 TIGR02982 heterocyst_DevA ABC 100.0 6.9E-38 1.5E-42 336.5 19.9 198 445-650 2-217 (220)
209 cd03290 ABCC_SUR1_N The SUR do 100.0 2.3E-37 5E-42 331.9 23.7 198 446-650 2-217 (218)
210 PRK14242 phosphate transporter 100.0 7.7E-38 1.7E-42 343.0 20.5 200 442-650 4-224 (253)
211 PRK14265 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 345.8 22.1 234 442-715 18-271 (274)
212 PRK10771 thiQ thiamine transpo 100.0 1.9E-37 4.2E-42 335.7 22.8 196 444-650 1-206 (232)
213 PRK14270 phosphate ABC transpo 100.0 9.6E-38 2.1E-42 342.0 20.7 199 443-650 3-222 (251)
214 cd03288 ABCC_SUR2 The SUR doma 100.0 2.3E-37 5E-42 340.3 23.7 203 441-650 16-230 (257)
215 PRK11701 phnK phosphonate C-P 100.0 1.2E-37 2.6E-42 342.6 21.3 199 443-650 5-228 (258)
216 PRK11231 fecE iron-dicitrate t 100.0 1.5E-37 3.3E-42 341.2 22.0 198 444-650 2-214 (255)
217 PRK14239 phosphate transporter 100.0 1.3E-37 2.8E-42 341.0 21.2 199 443-650 4-223 (252)
218 PRK11300 livG leucine/isoleuci 100.0 1.5E-37 3.3E-42 341.0 21.6 199 443-650 4-230 (255)
219 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.6E-37 5.7E-42 328.8 22.5 187 442-650 4-199 (207)
220 PRK14244 phosphate ABC transpo 100.0 1.1E-37 2.4E-42 341.4 19.9 197 445-650 6-224 (251)
221 PRK10419 nikE nickel transport 100.0 1.5E-37 3.2E-42 343.9 21.1 199 444-650 3-228 (268)
222 PRK14240 phosphate transporter 100.0 1.5E-37 3.2E-42 340.2 20.5 198 444-650 3-221 (250)
223 PRK14238 phosphate transporter 100.0 1.6E-37 3.4E-42 344.3 20.6 200 442-650 22-242 (271)
224 TIGR01188 drrA daunorubicin re 100.0 6.2E-38 1.4E-42 352.7 17.6 186 457-650 5-200 (302)
225 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-37 3E-42 336.1 19.5 194 445-650 1-208 (230)
226 PRK10895 lipopolysaccharide AB 100.0 1.9E-37 4.2E-42 337.5 20.8 198 444-650 3-213 (241)
227 PRK14249 phosphate ABC transpo 100.0 2.6E-37 5.7E-42 338.5 21.7 199 443-650 3-222 (251)
228 PRK14253 phosphate ABC transpo 100.0 1.9E-37 4.2E-42 339.1 20.2 198 444-650 3-220 (249)
229 TIGR03873 F420-0_ABC_ATP propo 100.0 2.8E-37 6E-42 339.4 21.4 197 445-650 2-213 (256)
230 PRK13538 cytochrome c biogenes 100.0 2.4E-37 5.1E-42 328.7 20.2 192 444-647 1-202 (204)
231 PRK14260 phosphate ABC transpo 100.0 3.3E-37 7.2E-42 339.4 21.9 198 443-649 6-224 (259)
232 PRK14271 phosphate ABC transpo 100.0 2.9E-37 6.3E-42 343.0 21.6 200 442-650 19-238 (276)
233 PRK14261 phosphate ABC transpo 100.0 3.1E-37 6.6E-42 338.4 21.1 199 443-650 5-224 (253)
234 PRK10261 glutathione transport 100.0 1.6E-37 3.4E-42 380.9 20.9 201 442-650 10-245 (623)
235 PRK10253 iron-enterobactin tra 100.0 3.8E-37 8.3E-42 340.1 21.9 199 443-650 6-220 (265)
236 TIGR02323 CP_lyasePhnK phospho 100.0 3.6E-37 7.9E-42 337.7 21.2 198 444-650 3-225 (253)
237 PRK11614 livF leucine/isoleuci 100.0 3.2E-37 6.9E-42 334.9 20.4 197 443-650 4-213 (237)
238 PRK14275 phosphate ABC transpo 100.0 2.9E-37 6.4E-42 344.6 20.5 200 442-650 37-257 (286)
239 cd03231 ABC_CcmA_heme_exporter 100.0 4.9E-37 1.1E-41 325.6 21.0 188 445-647 1-198 (201)
240 PRK14254 phosphate ABC transpo 100.0 9.6E-37 2.1E-41 340.3 24.4 198 442-649 37-255 (285)
241 cd03300 ABC_PotA_N PotA is an 100.0 3.1E-37 6.6E-42 334.2 19.6 197 445-650 1-207 (232)
242 TIGR01978 sufC FeS assembly AT 100.0 3.1E-37 6.7E-42 335.8 19.5 198 445-650 1-221 (243)
243 COG4615 PvdE ABC-type sideroph 100.0 1.9E-34 4.1E-39 317.0 41.0 448 161-650 65-524 (546)
244 TIGR03740 galliderm_ABC gallid 100.0 6E-37 1.3E-41 329.8 21.0 193 445-650 1-200 (223)
245 PRK13540 cytochrome c biogenes 100.0 4.5E-37 9.9E-42 325.5 19.6 188 444-645 1-197 (200)
246 PRK14258 phosphate ABC transpo 100.0 8.3E-37 1.8E-41 336.7 22.4 199 443-650 6-227 (261)
247 PRK14252 phosphate ABC transpo 100.0 9.1E-37 2E-41 337.0 22.8 200 442-650 14-236 (265)
248 cd03234 ABCG_White The White s 100.0 4.9E-37 1.1E-41 331.2 19.8 199 444-650 3-220 (226)
249 PRK14267 phosphate ABC transpo 100.0 4.9E-37 1.1E-41 336.7 20.1 198 444-650 4-224 (253)
250 cd03246 ABCC_Protease_Secretio 100.0 6.5E-37 1.4E-41 317.1 19.5 161 445-650 1-171 (173)
251 PRK13543 cytochrome c biogenes 100.0 9.7E-37 2.1E-41 326.4 21.3 195 443-649 10-212 (214)
252 TIGR01166 cbiO cobalt transpor 100.0 1.8E-37 4E-42 325.7 15.2 174 456-637 3-189 (190)
253 COG4598 HisP ABC-type histidin 100.0 6.8E-38 1.5E-42 313.0 11.3 225 443-715 5-254 (256)
254 PRK10418 nikD nickel transport 100.0 9.3E-37 2E-41 334.9 21.4 195 444-650 4-217 (254)
255 PRK09984 phosphonate/organopho 100.0 1.1E-36 2.3E-41 335.9 21.8 199 443-650 3-229 (262)
256 cd03299 ABC_ModC_like Archeal 100.0 7.6E-37 1.6E-41 331.8 20.2 196 445-650 1-206 (235)
257 PRK15056 manganese/iron transp 100.0 1.3E-36 2.9E-41 337.0 22.4 196 444-647 6-215 (272)
258 cd03247 ABCC_cytochrome_bd The 100.0 8.3E-37 1.8E-41 317.7 19.4 164 445-650 1-172 (178)
259 PRK14263 phosphate ABC transpo 100.0 2.2E-36 4.7E-41 333.4 23.4 200 443-648 7-222 (261)
260 PRK14246 phosphate ABC transpo 100.0 9.4E-37 2E-41 335.5 20.4 200 442-650 8-228 (257)
261 PRK13547 hmuV hemin importer A 100.0 1.4E-36 3E-41 336.7 21.6 198 444-650 1-231 (272)
262 PRK13539 cytochrome c biogenes 100.0 1.2E-36 2.5E-41 324.2 20.2 192 444-649 2-200 (207)
263 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-36 2.7E-41 327.4 20.3 197 444-648 1-223 (224)
264 PRK11144 modC molybdate transp 100.0 1.6E-36 3.5E-41 347.9 22.3 188 445-650 2-205 (352)
265 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-36 2.6E-41 325.4 19.8 190 446-650 3-208 (214)
266 PRK09544 znuC high-affinity zi 100.0 3.1E-36 6.7E-41 330.3 23.3 185 444-649 4-196 (251)
267 PRK14272 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 333.0 20.3 198 444-650 4-223 (252)
268 PRK14262 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 330.3 21.1 198 444-650 3-221 (250)
269 TIGR01189 ccmA heme ABC export 100.0 1.6E-36 3.5E-41 320.7 18.7 187 445-645 1-196 (198)
270 PRK14255 phosphate ABC transpo 100.0 2.8E-36 6.1E-41 330.5 20.9 199 443-650 4-223 (252)
271 PRK14236 phosphate transporter 100.0 3.2E-36 7E-41 333.9 21.6 200 442-650 23-243 (272)
272 TIGR02142 modC_ABC molybdenum 100.0 2.9E-36 6.3E-41 346.1 21.4 189 449-650 4-208 (354)
273 cd03230 ABC_DR_subfamily_A Thi 100.0 4.2E-36 9E-41 311.1 20.4 161 445-650 1-171 (173)
274 PRK14266 phosphate ABC transpo 100.0 3.8E-36 8.2E-41 329.0 20.8 202 444-650 3-221 (250)
275 cd03267 ABC_NatA_like Similar 100.0 1.8E-36 4E-41 329.1 18.1 186 457-650 33-230 (236)
276 COG4619 ABC-type uncharacteriz 100.0 7E-37 1.5E-41 303.2 13.4 186 456-650 14-210 (223)
277 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.4E-35 5.1E-40 328.1 26.9 192 442-650 37-234 (282)
278 PRK15134 microcin C ABC transp 100.0 2.5E-36 5.4E-41 364.5 19.7 199 443-650 274-502 (529)
279 cd03228 ABCC_MRP_Like The MRP 100.0 5.5E-36 1.2E-40 309.6 19.1 161 445-650 1-170 (171)
280 TIGR01184 ntrCD nitrate transp 100.0 3.5E-36 7.6E-41 325.7 18.3 182 461-650 1-191 (230)
281 cd03229 ABC_Class3 This class 100.0 7.4E-36 1.6E-40 310.6 19.8 163 445-650 1-177 (178)
282 PRK14264 phosphate ABC transpo 100.0 1.5E-35 3.3E-40 333.7 23.5 200 442-650 43-276 (305)
283 PRK10762 D-ribose transporter 100.0 4.7E-36 1E-40 359.8 20.6 199 443-650 3-217 (501)
284 PRK13549 xylose transporter AT 100.0 6.1E-36 1.3E-40 359.2 20.6 199 443-650 4-219 (506)
285 COG1137 YhbG ABC-type (unclass 100.0 9.4E-37 2E-41 310.6 11.0 199 443-650 3-215 (243)
286 PRK11288 araG L-arabinose tran 100.0 7.6E-36 1.7E-40 358.0 20.8 199 443-650 3-216 (501)
287 PRK13541 cytochrome c biogenes 100.0 1.3E-35 2.9E-40 313.1 19.5 185 445-644 2-192 (195)
288 PRK15134 microcin C ABC transp 100.0 1.1E-35 2.3E-40 358.9 21.2 200 443-650 4-233 (529)
289 PRK09700 D-allose transporter 100.0 1.3E-35 2.7E-40 356.9 21.6 199 443-650 4-221 (510)
290 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-35 3.5E-40 355.7 22.5 195 443-650 10-216 (510)
291 cd03215 ABC_Carb_Monos_II This 100.0 1.2E-35 2.7E-40 310.1 18.7 163 443-650 3-180 (182)
292 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-35 6.9E-40 322.0 22.4 200 443-650 6-228 (252)
293 COG0411 LivG ABC-type branched 100.0 4.7E-36 1E-40 316.2 15.2 199 443-650 3-226 (250)
294 cd03232 ABC_PDR_domain2 The pl 100.0 1.8E-35 4E-40 311.4 18.9 171 444-651 3-186 (192)
295 cd03213 ABCG_EPDR ABCG transpo 100.0 1.8E-35 4E-40 312.0 18.5 170 444-650 3-188 (194)
296 COG4559 ABC-type hemin transpo 100.0 2.3E-35 4.9E-40 302.9 17.4 198 444-650 1-217 (259)
297 PRK09580 sufC cysteine desulfu 100.0 6.3E-35 1.4E-39 318.8 21.7 199 444-650 1-222 (248)
298 cd03214 ABC_Iron-Siderophores_ 100.0 1.6E-35 3.4E-40 308.7 16.2 163 446-650 1-174 (180)
299 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.9E-35 6.2E-40 317.3 18.4 191 445-650 23-218 (224)
300 PRK10982 galactose/methyl gala 100.0 2.6E-35 5.7E-40 352.6 19.5 195 447-650 1-210 (491)
301 TIGR02770 nickel_nikD nickel i 100.0 3.1E-35 6.7E-40 318.2 17.9 183 460-650 1-202 (230)
302 cd03233 ABC_PDR_domain1 The pl 100.0 6.4E-35 1.4E-39 309.8 19.8 176 444-650 3-196 (202)
303 COG0410 LivF ABC-type branched 100.0 9.3E-35 2E-39 304.3 20.3 198 443-650 2-213 (237)
304 TIGR03269 met_CoM_red_A2 methy 100.0 4.5E-35 9.7E-40 352.9 20.1 197 445-650 1-245 (520)
305 TIGR02633 xylG D-xylose ABC tr 100.0 5.8E-35 1.3E-39 350.4 20.7 197 445-650 2-217 (500)
306 TIGR03269 met_CoM_red_A2 methy 100.0 7.1E-35 1.5E-39 351.2 21.0 199 443-650 278-504 (520)
307 PRK03695 vitamin B12-transport 100.0 7.2E-35 1.6E-39 318.9 19.0 190 446-650 2-209 (248)
308 PRK10938 putative molybdenum t 100.0 6.5E-35 1.4E-39 349.1 20.4 190 444-650 3-211 (490)
309 COG4161 ArtP ABC-type arginine 100.0 2E-35 4.4E-40 290.5 12.8 198 444-650 2-217 (242)
310 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-34 2.5E-39 316.9 19.9 182 453-652 2-194 (246)
311 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-34 2.8E-39 306.9 19.5 166 445-650 1-181 (200)
312 PRK13549 xylose transporter AT 100.0 6.3E-35 1.4E-39 350.5 18.3 200 443-650 258-481 (506)
313 COG4167 SapF ABC-type antimicr 100.0 5.4E-35 1.2E-39 292.8 14.5 227 444-717 4-254 (267)
314 PRK10535 macrolide transporter 100.0 1.4E-34 3.1E-39 356.1 21.2 199 444-650 4-219 (648)
315 PRK11819 putative ABC transpor 100.0 1.8E-34 3.9E-39 350.0 21.7 194 443-650 5-236 (556)
316 PRK09700 D-allose transporter 100.0 1.1E-34 2.4E-39 348.7 19.2 197 443-650 264-485 (510)
317 PRK15064 ABC transporter ATP-b 100.0 2.6E-34 5.5E-39 347.1 22.4 193 444-650 1-228 (530)
318 COG4152 ABC-type uncharacteriz 100.0 3.6E-35 7.7E-40 306.9 11.7 198 444-650 2-206 (300)
319 COG1129 MglA ABC-type sugar tr 100.0 2.9E-34 6.3E-39 333.0 19.8 199 443-650 7-221 (500)
320 COG4107 PhnK ABC-type phosphon 100.0 1.1E-34 2.5E-39 288.4 14.1 223 442-716 4-255 (258)
321 cd03216 ABC_Carb_Monos_I This 100.0 4.8E-34 1E-38 293.1 18.9 147 445-650 1-158 (163)
322 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-34 4E-39 346.1 18.1 200 443-650 256-479 (500)
323 TIGR03771 anch_rpt_ABC anchore 100.0 4E-34 8.8E-39 308.2 18.4 174 466-647 1-186 (223)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.1E-34 1.8E-38 344.2 23.2 195 442-652 320-518 (552)
325 PRK15064 ABC transporter ATP-b 100.0 1.1E-33 2.4E-38 341.5 24.0 189 443-650 318-511 (530)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.3E-34 1.6E-38 344.6 21.8 203 443-650 3-234 (552)
327 PRK13546 teichoic acids export 100.0 9.5E-34 2.1E-38 312.7 20.7 178 458-650 37-219 (264)
328 PRK11819 putative ABC transpor 100.0 1.1E-33 2.3E-38 343.3 22.9 197 442-654 322-522 (556)
329 TIGR01257 rim_protein retinal- 100.0 5.7E-34 1.2E-38 374.4 21.1 200 443-650 927-1136(2272)
330 PRK13545 tagH teichoic acids e 100.0 1.8E-33 3.9E-38 329.5 22.5 194 442-650 19-219 (549)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.8E-33 8.3E-38 280.7 19.5 142 445-650 1-143 (144)
332 PRK10762 D-ribose transporter 100.0 9.6E-34 2.1E-38 339.9 17.8 194 443-650 256-471 (501)
333 TIGR01257 rim_protein retinal- 100.0 1.6E-33 3.5E-38 370.1 21.2 201 442-650 1935-2146(2272)
334 COG3845 ABC-type uncharacteriz 100.0 1.3E-33 2.8E-38 321.2 17.5 200 443-651 3-217 (501)
335 PRK11288 araG L-arabinose tran 100.0 1.1E-33 2.3E-38 339.4 17.9 195 443-650 256-472 (501)
336 PRK10938 putative molybdenum t 100.0 1.8E-33 4E-38 336.6 18.5 200 442-650 258-479 (490)
337 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-32 3.4E-37 338.4 27.0 300 736-1035 73-373 (659)
338 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-33 4.4E-38 308.5 17.1 189 448-650 4-215 (255)
339 PRK10636 putative ABC transpor 100.0 3.3E-33 7.2E-38 343.2 20.8 206 444-664 1-235 (638)
340 PRK11147 ABC transporter ATPas 100.0 9.1E-33 2E-37 339.8 23.7 206 442-663 317-526 (635)
341 PLN03211 ABC transporter G-25; 100.0 1.8E-33 3.9E-38 345.4 17.3 198 449-650 73-283 (659)
342 COG4148 ModC ABC-type molybdat 100.0 3E-33 6.6E-38 297.0 13.7 174 463-650 16-205 (352)
343 COG4604 CeuD ABC-type enteroch 100.0 9.6E-34 2.1E-38 287.7 9.4 198 444-650 1-212 (252)
344 COG0488 Uup ATPase components 100.0 4.6E-33 9.9E-38 330.6 16.4 255 444-714 3-289 (530)
345 PRK13409 putative ATPase RIL; 100.0 2E-32 4.4E-37 332.3 22.3 187 442-650 338-530 (590)
346 PRK10982 galactose/methyl gala 100.0 8.1E-33 1.8E-37 331.1 18.3 197 443-650 249-467 (491)
347 PRK15439 autoinducer 2 ABC tra 100.0 8.6E-33 1.9E-37 332.2 18.2 194 443-650 267-479 (510)
348 TIGR00956 3a01205 Pleiotropic 100.0 5.9E-32 1.3E-36 355.1 27.3 207 444-654 759-983 (1394)
349 PRK10636 putative ABC transpor 100.0 3.8E-32 8.3E-37 333.9 23.0 189 442-650 310-503 (638)
350 PLN03073 ABC transporter F fam 100.0 3.3E-32 7.1E-37 336.1 22.3 192 443-650 507-700 (718)
351 COG4136 ABC-type uncharacteriz 100.0 1.2E-32 2.6E-37 268.3 14.5 195 444-648 2-208 (213)
352 TIGR01187 potA spermidine/putr 100.0 8E-33 1.7E-37 314.2 15.3 167 476-650 1-177 (325)
353 COG1119 ModF ABC-type molybden 100.0 1.4E-32 3.1E-37 289.8 14.6 201 442-651 29-250 (257)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 7.4E-32 1.6E-36 280.0 17.7 142 448-652 4-150 (177)
355 PRK11147 ABC transporter ATPas 100.0 1.2E-31 2.7E-36 329.8 21.7 203 444-663 3-241 (635)
356 PF06472 ABC_membrane_2: ABC t 100.0 1.3E-29 2.9E-34 282.2 35.8 275 85-359 7-281 (281)
357 PRK15177 Vi polysaccharide exp 100.0 9.2E-32 2E-36 288.0 16.9 172 460-650 2-179 (213)
358 TIGR00955 3a01204 The Eye Pigm 100.0 8.6E-32 1.9E-36 330.0 15.7 192 457-650 37-243 (617)
359 cd03238 ABC_UvrA The excision 100.0 3.5E-31 7.6E-36 274.7 17.7 150 458-650 8-164 (176)
360 PRK13409 putative ATPase RIL; 100.0 3.6E-31 7.8E-36 321.5 17.3 184 449-650 78-287 (590)
361 PLN03140 ABC transporter G fam 100.0 9.1E-31 2E-35 342.9 21.5 207 444-653 867-1099(1470)
362 COG4170 SapD ABC-type antimicr 100.0 2.8E-31 6.1E-36 271.0 10.7 275 444-767 3-324 (330)
363 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.7E-30 5.9E-35 263.2 17.8 144 447-649 2-155 (157)
364 COG0396 sufC Cysteine desulfur 100.0 8.2E-30 1.8E-34 266.0 18.7 200 444-650 3-221 (251)
365 PLN03073 ABC transporter F fam 100.0 2.1E-30 4.6E-35 320.1 14.6 199 442-650 175-417 (718)
366 COG1101 PhnK ABC-type uncharac 100.0 2.5E-29 5.3E-34 259.1 12.4 197 446-650 3-225 (263)
367 COG4674 Uncharacterized ABC-ty 100.0 3.3E-29 7.2E-34 254.4 13.1 199 443-650 4-222 (249)
368 COG0488 Uup ATPase components 100.0 5E-28 1.1E-32 287.7 24.3 190 442-649 319-511 (530)
369 COG4778 PhnL ABC-type phosphon 100.0 1.9E-29 4E-34 250.8 9.1 199 444-649 4-227 (235)
370 COG4178 ABC-type uncharacteriz 100.0 3.1E-28 6.8E-33 287.8 20.9 268 746-1014 30-317 (604)
371 COG1134 TagH ABC-type polysacc 100.0 1.4E-28 3E-33 260.2 15.8 178 458-650 40-223 (249)
372 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-29 1.5E-33 326.1 16.9 190 458-650 74-287 (1394)
373 COG4133 CcmA ABC-type transpor 100.0 5.1E-29 1.1E-33 252.7 11.6 183 445-639 3-194 (209)
374 COG4586 ABC-type uncharacteriz 100.0 5.7E-29 1.2E-33 264.3 9.7 178 459-650 38-233 (325)
375 KOG0061 Transporter, ABC super 100.0 3.8E-28 8.3E-33 295.7 16.9 205 443-650 24-247 (613)
376 cd03270 ABC_UvrA_I The excisio 100.0 5.9E-28 1.3E-32 260.9 16.3 178 457-650 7-214 (226)
377 PLN03140 ABC transporter G fam 100.0 3.8E-28 8.3E-33 318.3 15.6 190 458-650 178-414 (1470)
378 PF00005 ABC_tran: ABC transpo 99.9 2E-28 4.3E-33 242.9 9.1 130 461-607 1-137 (137)
379 PRK12369 putative transporter; 99.9 3.4E-26 7.3E-31 258.2 26.9 255 765-1039 23-295 (326)
380 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-27 4.5E-32 251.4 13.6 160 462-650 14-191 (197)
381 cd03271 ABC_UvrA_II The excisi 99.9 4.1E-25 8.8E-30 242.6 15.6 174 459-649 9-246 (261)
382 KOG0059 Lipid exporter ABCA1 a 99.9 1.6E-25 3.5E-30 283.6 13.5 201 443-651 563-775 (885)
383 PRK12369 putative transporter; 99.9 3.9E-22 8.5E-27 225.3 39.2 297 93-418 4-320 (326)
384 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.8E-25 1.3E-29 235.5 14.6 184 444-652 5-211 (213)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.4E-25 9.6E-30 242.2 13.9 170 471-648 25-242 (251)
386 cd03272 ABC_SMC3_euk Eukaryoti 99.9 7.1E-25 1.5E-29 238.9 15.4 181 445-649 4-235 (243)
387 PRK11098 microcin B17 transpor 99.9 1.5E-23 3.3E-28 240.9 26.9 248 767-1036 100-366 (409)
388 KOG0062 ATPase component of AB 99.9 4.1E-25 9E-30 251.4 10.4 255 442-714 78-334 (582)
389 KOG0927 Predicted transporter 99.9 8.8E-25 1.9E-29 250.0 10.0 193 442-651 387-583 (614)
390 PRK11098 microcin B17 transpor 99.9 8E-21 1.7E-25 218.6 40.0 284 108-421 95-397 (409)
391 cd03240 ABC_Rad50 The catalyti 99.9 7.9E-24 1.7E-28 225.3 13.9 160 464-651 16-199 (204)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.4E-24 3.1E-29 232.3 6.4 181 444-649 5-204 (212)
393 KOG0065 Pleiotropic drug resis 99.9 1.3E-23 2.8E-28 260.9 9.2 194 457-654 803-1011(1391)
394 COG1129 MglA ABC-type sugar tr 99.9 9.5E-23 2.1E-27 237.4 15.6 197 442-650 261-477 (500)
395 COG4138 BtuD ABC-type cobalami 99.9 5.6E-24 1.2E-28 212.7 3.3 188 444-650 3-208 (248)
396 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1E-22 2.2E-27 223.0 12.5 176 472-651 23-235 (247)
397 KOG0066 eIF2-interacting prote 99.9 2.5E-22 5.3E-27 222.8 13.0 181 442-641 584-767 (807)
398 KOG0927 Predicted transporter 99.9 1.4E-22 3.1E-27 232.0 11.2 220 442-674 73-318 (614)
399 PRK00349 uvrA excinuclease ABC 99.9 1.5E-21 3.3E-26 245.3 16.5 73 577-649 829-907 (943)
400 PRK00635 excinuclease ABC subu 99.9 1.8E-21 4E-26 253.5 17.3 191 443-648 599-885 (1809)
401 COG1245 Predicted ATPase, RNas 99.8 1.3E-20 2.8E-25 211.9 15.4 173 460-652 351-534 (591)
402 KOG0062 ATPase component of AB 99.8 7.7E-21 1.7E-25 216.8 13.3 192 442-651 360-556 (582)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.3E-20 2.8E-25 199.8 13.9 162 461-649 12-190 (198)
404 COG3845 ABC-type uncharacteriz 99.8 1.2E-19 2.7E-24 207.5 16.0 202 442-650 255-479 (501)
405 TIGR00630 uvra excinuclease AB 99.8 6.7E-20 1.5E-24 230.2 14.6 72 577-648 827-904 (924)
406 KOG2355 Predicted ABC-type tra 99.8 9.1E-18 2E-22 172.2 14.6 187 442-650 11-224 (291)
407 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.4E-18 5.2E-23 182.7 8.9 137 460-649 16-165 (200)
408 cd03239 ABC_SMC_head The struc 99.7 1.6E-17 3.4E-22 173.3 14.8 72 579-650 95-173 (178)
409 COG2401 ABC-type ATPase fused 99.7 2.2E-17 4.8E-22 183.9 14.7 172 459-650 397-585 (593)
410 cd03241 ABC_RecN RecN ATPase i 99.7 1.6E-17 3.4E-22 185.1 13.4 87 564-650 156-248 (276)
411 COG1245 Predicted ATPase, RNas 99.7 7.9E-18 1.7E-22 189.6 10.8 166 468-650 97-289 (591)
412 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.4E-16 2.9E-21 171.0 13.6 174 461-650 14-210 (213)
413 cd03227 ABC_Class2 ABC-type Cl 99.7 6.7E-17 1.4E-21 166.0 10.5 136 462-649 12-155 (162)
414 PF00664 ABC_membrane: ABC tra 99.7 4.7E-13 1E-17 144.0 35.3 217 109-327 3-220 (275)
415 KOG0066 eIF2-interacting prote 99.6 1.2E-16 2.6E-21 178.0 7.2 185 444-650 264-485 (807)
416 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.5E-16 3.3E-21 171.7 6.1 144 457-649 16-167 (222)
417 PRK00635 excinuclease ABC subu 99.6 1.1E-15 2.3E-20 200.2 14.1 75 577-651 1698-1778(1809)
418 COG0178 UvrA Excinuclease ATPa 99.6 2.6E-15 5.7E-20 179.4 13.3 74 577-650 821-900 (935)
419 KOG0065 Pleiotropic drug resis 99.6 1.3E-15 2.8E-20 190.6 11.0 190 458-650 128-338 (1391)
420 cd03283 ABC_MutS-like MutS-lik 99.6 1.3E-15 2.8E-20 161.7 7.9 136 458-641 14-154 (199)
421 cd03243 ABC_MutS_homologs The 99.6 2.6E-15 5.6E-20 159.7 6.9 140 463-649 21-165 (202)
422 cd03242 ABC_RecF RecF is a rec 99.5 2.3E-14 5.1E-19 159.2 12.5 74 577-650 182-267 (270)
423 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.2E-14 9E-19 150.8 10.0 137 457-640 15-156 (204)
424 KOG0063 RNAse L inhibitor, ABC 99.5 1.2E-13 2.6E-18 154.9 12.2 181 452-652 343-535 (592)
425 cd01128 rho_factor Transcripti 99.4 2.1E-13 4.5E-18 149.4 8.6 172 466-650 11-209 (249)
426 TIGR00630 uvra excinuclease AB 99.4 3.5E-13 7.6E-18 170.1 11.3 87 554-648 470-562 (924)
427 cd03284 ABC_MutS1 MutS1 homolo 99.4 4E-13 8.6E-18 144.6 10.0 136 458-647 18-165 (216)
428 PRK00349 uvrA excinuclease ABC 99.4 3.6E-13 7.8E-18 170.3 10.3 88 553-648 471-564 (943)
429 cd00820 PEPCK_HprK Phosphoenol 99.4 4.3E-13 9.2E-18 127.7 6.4 72 458-537 2-79 (107)
430 TIGR02858 spore_III_AA stage I 99.4 2E-12 4.4E-17 143.2 11.3 126 472-650 112-258 (270)
431 PF02463 SMC_N: RecF/RecN/SMC 99.4 3.2E-12 7E-17 137.4 11.5 172 462-648 16-212 (220)
432 TIGR01069 mutS2 MutS2 family p 99.3 6.7E-12 1.5E-16 157.0 15.2 144 444-639 295-449 (771)
433 smart00534 MUTSac ATPase domai 99.3 1.1E-12 2.3E-17 137.8 4.6 64 577-643 60-130 (185)
434 PRK00064 recF recombination pr 99.3 3E-11 6.5E-16 139.7 15.8 74 577-650 272-357 (361)
435 PF05992 SbmA_BacA: SbmA/BacA- 99.3 1.1E-08 2.3E-13 113.4 33.9 279 108-416 13-310 (315)
436 cd03281 ABC_MSH5_euk MutS5 hom 99.3 2E-11 4.3E-16 131.2 11.5 131 459-641 17-160 (213)
437 TIGR00606 rad50 rad50. This fa 99.2 4.6E-11 9.9E-16 158.7 13.4 116 524-648 1153-1289(1311)
438 KOG0063 RNAse L inhibitor, ABC 99.2 2.7E-11 5.8E-16 136.3 5.9 165 469-650 98-289 (592)
439 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.9E-10 4.1E-15 124.2 10.5 137 458-641 18-160 (222)
440 PTZ00132 GTP-binding nuclear p 99.1 4.1E-11 8.8E-16 128.4 4.9 42 583-624 157-203 (215)
441 PHA02562 46 endonuclease subun 99.1 1.1E-10 2.3E-15 142.8 9.1 75 577-651 467-553 (562)
442 TIGR00634 recN DNA repair prot 99.1 2.3E-10 5E-15 139.8 10.0 73 578-650 440-518 (563)
443 PRK10869 recombination and rep 99.0 4.5E-10 9.7E-15 136.5 10.0 73 578-650 430-508 (553)
444 PRK00409 recombination and DNA 99.0 1.5E-09 3.2E-14 136.5 14.1 63 577-640 389-455 (782)
445 PRK08533 flagellar accessory p 99.0 3.9E-09 8.5E-14 114.9 13.2 155 445-648 8-184 (230)
446 PRK13695 putative NTPase; Prov 99.0 2.9E-10 6.3E-15 118.1 3.9 73 577-650 77-151 (174)
447 PRK01156 chromosome segregatio 98.9 2.9E-09 6.2E-14 137.3 10.3 76 576-651 799-886 (895)
448 TIGR00618 sbcc exonuclease Sbc 98.9 3E-09 6.5E-14 138.9 9.8 77 576-652 948-1038(1042)
449 PRK03918 chromosome segregatio 98.9 4.2E-09 9E-14 135.6 10.5 74 577-650 787-869 (880)
450 PRK07721 fliI flagellum-specif 98.9 7.8E-09 1.7E-13 121.8 11.4 149 456-650 144-330 (438)
451 cd01124 KaiC KaiC is a circadi 98.8 1E-08 2.3E-13 106.9 9.0 73 577-649 70-164 (187)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.1E-08 8.8E-13 105.9 13.4 137 457-640 16-158 (218)
453 PRK06793 fliI flagellum-specif 98.8 2.5E-08 5.5E-13 116.7 12.1 155 444-643 130-294 (432)
454 TIGR03238 dnd_assoc_3 dnd syst 98.7 3E-09 6.5E-14 124.1 2.0 48 459-508 20-68 (504)
455 TIGR02168 SMC_prok_B chromosom 98.7 1.6E-08 3.4E-13 133.7 8.5 73 576-648 1087-1165(1179)
456 TIGR02788 VirB11 P-type DNA tr 98.7 4.2E-08 9E-13 111.4 9.8 127 464-648 137-266 (308)
457 PRK10246 exonuclease subunit S 98.7 4E-08 8.6E-13 128.1 9.4 74 576-649 947-1032(1047)
458 COG1133 SbmA ABC-type long-cha 98.6 0.00016 3.5E-09 79.0 34.1 297 91-417 73-389 (405)
459 cd01131 PilT Pilus retraction 98.6 1E-07 2.2E-12 101.4 9.7 57 588-648 66-122 (198)
460 TIGR02169 SMC_prok_A chromosom 98.6 5.6E-08 1.2E-12 128.6 9.2 74 576-649 1072-1151(1164)
461 cd01120 RecA-like_NTPases RecA 98.6 2E-07 4.3E-12 93.8 10.7 127 473-638 1-140 (165)
462 COG3910 Predicted ATPase [Gene 98.6 4.8E-07 1E-11 93.2 12.2 73 578-651 129-205 (233)
463 COG0178 UvrA Excinuclease ATPa 98.6 1.6E-07 3.5E-12 113.9 10.2 75 576-650 479-558 (935)
464 PRK06995 flhF flagellar biosyn 98.5 6.6E-08 1.4E-12 114.8 5.6 149 461-633 246-400 (484)
465 PRK02224 chromosome segregatio 98.5 1.3E-07 2.7E-12 122.1 8.7 74 577-650 780-869 (880)
466 PRK13830 conjugal transfer pro 98.5 2.5E-07 5.4E-12 117.7 10.3 58 593-650 649-720 (818)
467 PRK06002 fliI flagellum-specif 98.5 2.6E-07 5.6E-12 108.5 9.1 81 442-523 137-230 (450)
468 PRK06067 flagellar accessory p 98.5 2.2E-06 4.7E-11 93.4 14.9 149 467-649 21-187 (234)
469 cd02023 UMPK Uridine monophosp 98.5 1.5E-07 3.4E-12 99.7 5.4 113 473-611 1-113 (198)
470 TIGR00767 rho transcription te 98.4 3.3E-07 7.2E-12 105.7 7.7 80 407-497 104-194 (415)
471 cd01130 VirB11-like_ATPase Typ 98.4 3.4E-07 7.4E-12 96.4 6.6 77 460-536 14-96 (186)
472 cd01125 repA Hexameric Replica 98.3 6.7E-07 1.5E-11 97.8 6.7 44 592-636 107-160 (239)
473 TIGR00611 recf recF protein. A 98.3 6.4E-07 1.4E-11 104.0 6.7 63 577-639 274-345 (365)
474 smart00382 AAA ATPases associa 98.3 9.3E-06 2E-10 78.4 13.2 115 470-634 1-125 (148)
475 PRK05399 DNA mismatch repair p 98.3 1.2E-05 2.5E-10 103.0 17.3 135 458-642 595-737 (854)
476 TIGR01420 pilT_fam pilus retra 98.2 3.5E-06 7.5E-11 97.3 9.6 123 468-647 119-242 (343)
477 TIGR00958 3a01208 Conjugate Tr 98.2 7.5E-05 1.6E-09 94.4 21.9 226 760-993 162-392 (711)
478 PF05992 SbmA_BacA: SbmA/BacA- 98.2 0.00018 3.9E-09 80.3 21.8 221 793-1035 51-283 (315)
479 PRK00300 gmk guanylate kinase; 98.2 2E-06 4.4E-11 91.4 5.3 28 469-496 3-30 (205)
480 TIGR02655 circ_KaiC circadian 98.1 1.8E-07 4E-12 112.5 -3.6 153 467-649 17-191 (484)
481 TIGR02680 conserved hypothetic 98.1 2.9E-06 6.4E-11 113.1 7.3 61 576-636 1245-1317(1353)
482 PRK06315 type III secretion sy 98.1 2.7E-06 5.8E-11 100.2 5.7 103 457-561 151-277 (442)
483 COG0419 SbcC ATPase involved i 98.1 7.6E-06 1.6E-10 105.9 9.2 76 576-651 813-899 (908)
484 PRK07196 fliI flagellum-specif 98.1 4.1E-06 8.9E-11 98.5 5.9 78 456-534 141-234 (434)
485 PRK13891 conjugal transfer pro 98.0 4.1E-05 9E-10 98.2 14.7 52 589-640 680-735 (852)
486 PRK01889 GTPase RsgA; Reviewed 98.0 4.4E-06 9.5E-11 96.8 4.7 77 460-536 184-263 (356)
487 PRK14079 recF recombination pr 98.0 1.4E-05 3.1E-10 92.4 8.0 69 578-649 263-340 (349)
488 TIGR02524 dot_icm_DotB Dot/Icm 98.0 1.1E-05 2.5E-10 93.3 6.9 67 469-535 132-211 (358)
489 TIGR02203 MsbA_lipidA lipid A 97.9 0.00026 5.7E-09 87.1 18.9 246 764-1014 19-265 (571)
490 PF09818 ABC_ATPase: Predicted 97.9 9.8E-05 2.1E-09 85.8 13.3 164 450-649 227-413 (448)
491 PRK08149 ATP synthase SpaL; Va 97.9 2E-05 4.3E-10 92.7 7.8 67 456-523 137-216 (428)
492 TIGR01026 fliI_yscN ATPase Fli 97.9 3.8E-05 8.2E-10 91.0 9.5 53 454-507 147-199 (440)
493 PRK13657 cyclic beta-1,2-gluca 97.8 0.00068 1.5E-08 84.0 20.3 242 765-1014 25-267 (588)
494 TIGR02204 MsbA_rel ABC transpo 97.8 0.001 2.3E-08 82.0 21.8 245 764-1014 23-269 (576)
495 PRK07594 type III secretion sy 97.8 1.7E-05 3.8E-10 93.3 5.7 64 443-507 128-191 (433)
496 PLN03210 Resistant to P. syrin 97.8 6.1E-05 1.3E-09 100.0 11.4 43 464-506 200-243 (1153)
497 TIGR02903 spore_lon_C ATP-depe 97.8 4.1E-05 8.9E-10 94.8 8.9 109 471-623 175-291 (615)
498 PF00664 ABC_membrane: ABC tra 97.8 0.00043 9.4E-09 74.3 15.6 238 767-1010 7-248 (275)
499 TIGR02857 CydD thiol reductant 97.8 0.0016 3.6E-08 79.5 22.3 239 769-1013 13-254 (529)
500 TIGR03881 KaiC_arch_4 KaiC dom 97.8 1E-05 2.2E-10 87.8 2.3 40 467-506 16-56 (229)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-77 Score=697.80 Aligned_cols=530 Identities=22% Similarity=0.268 Sum_probs=432.5
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCh-hHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRV-PLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~-~~~-~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
...++||+++++|+|+. +.+.++++++.+..+..+|++.|.++|.+.. .+. ..+.+......++.++.+++++
T Consensus 132 ~~~~~rl~~l~~~~~~~-----l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hhHHHHHHHHhchhHHH-----HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999884 6677777777778888999999999998876 222 1222222222333333344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~ 241 (1064)
+..++..+.+.+ +..++|...|+++++++++|||. +.|++.+|+++|...+.+.+...+...+.+.+.++ .+..
T Consensus 207 ~r~~~~~~a~~r----v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~-g~~~ 281 (716)
T KOG0058|consen 207 IRGGLLQYAGER----VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGF-GGLG 281 (716)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Confidence 666666666666 78888999999999999999987 58899999999999998888888888877776543 3456
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 001511 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1064)
Q Consensus 242 l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~ 321 (1064)
+|+++||.|+++.++.+|+++++...+++..+++.++.|+..++.++..+|...++++|++|++|+.|.+++.++.++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999877777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 322 RHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1064)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~-~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~ 400 (1064)
+..++. ....++++.............++ ++||.+.. +.+|.| .+.+|+.|... +..++..+...+
T Consensus 362 ~i~~k~---a~a~~~f~~~~~~~~~~~~~siL----~~Gg~Lv~~g~mt~g--~L~sFllY~~~----~g~sl~~ls~~y 428 (716)
T KOG0058|consen 362 KLSKKE---AVAYGIFFGSTNLLGNLAVLSIL----FYGGHLVLTGSLTSG--ALSSFLLYQVQ----LGSSLSGLSSFY 428 (716)
T ss_pred HHHHHH---HHHhhHhHhHHHHHHhHHHHHHH----HhccchhhcCccchh--HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 543322 22233333332222233333333 35666653 455555 66777766543 446788888999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEc
Q 001511 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
..+.+..++.+|++|++|.+|..+..+...+ ....+.|+|+||+|.||.. .++|+|+||+|+|||+|||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~p-------~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTLAP-------DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCcccc-------ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 9999999999999999998876553211111 1235789999999999975 479999999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
|||+||||+.++|.++|+|++|+|.+||+| ..+|++||+|.|||.+|++||+|||.|+... .++|++.
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~------~t~e~i~ 575 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN------ATDEEIE 575 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC------CCHHHHH
Confidence 999999999999999999999999999987 3578999999999999999999999999763 6899999
Q ss_pred HHHHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~T 627 (1064)
.+++.++.++|+..+|+++++. .|.+|||||||||||||||++||+||||||+|||||.++|..+++.+.+ .++|
T Consensus 576 ~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rT 655 (716)
T KOG0058|consen 576 AAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRT 655 (716)
T ss_pred HHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCe
Confidence 9999999999999999987763 6889999999999999999999999999999999999999999999975 4899
Q ss_pred EEEEccChhHHHhcCEEEEEeCC
Q 001511 628 CITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+|+||+++++.||+|++++++
T Consensus 656 VlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 656 VLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred EEEEehhhhHhhhccEEEEEcCC
Confidence 99999999999999999999975
No 2
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.6e-77 Score=677.49 Aligned_cols=630 Identities=38% Similarity=0.611 Sum_probs=541.5
Q ss_pred HHhhhhhhhcccchhhhhhccccCCCCccccCCCCCCCCCCcc-cccccccchhcccccccChHHHHHHHHHHhhchh-h
Q 001511 24 ILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGDSERKPD-KAVANRSNIKKANQKKGGLKSLQVLAAILLSEMG-K 101 (1064)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~rL~~~~~p~~~-~ 101 (1064)
+++++++..+|++++|+..+..+..+++|. ++...+.++.. -....+..++|-+.++..+..+.++++++.|... .
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~t~~~~~~~~~~~~~k~~~~~~f~~k~~~ilkil~p~~~~~ 79 (659)
T KOG0060|consen 2 LAITAKVCAPGLVLRHASFLLAKLYIGSFR--GNPRFRSETCMSLAGKKQGAKAKASLDKVFFQKFLQILKILFPSTFSS 79 (659)
T ss_pred CcccccccCchhHHHHHHHHHHHhhhhhcc--CCCcccccchhhccCCCCCccchhhhhHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999999999999995 44444444433 3333344445666777778889999999988755 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 102 MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1064)
Q Consensus 102 ~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~ 181 (1064)
...+++++++++.+..++.++.+..+.+.++.++++++.+.|.+.+..+++++.+.+.++++.+|....+..+||+++++
T Consensus 80 ~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk 159 (659)
T KOG0060|consen 80 QTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTK 159 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 44445666777777777777788888999999999999999999998888888888888999999999999999999999
Q ss_pred HHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001511 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGA 261 (1064)
Q Consensus 182 ~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~ 261 (1064)
.++..||++..||.++..+.+++|||||+++|++++|..+.+++.+++.++++++.|+|.++-...|....+++.|+.+.
T Consensus 160 ~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~ 239 (659)
T KOG0060|consen 160 YLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIG 239 (659)
T ss_pred HHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999989
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 262 GTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1064)
Q Consensus 262 ~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 341 (1064)
+++.+.+.+++.+++.++|+.||++|+.+.+++.|+|.|++|++++.|....+++|+++.++.+..+...++.+++++++
T Consensus 240 ~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~ 319 (659)
T KOG0060|consen 240 TVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIF 319 (659)
T ss_pred HHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001511 342 LKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1064)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1064)
. |++.+++++++..|+|.|.. .+..+ .+++...+.+...++..++++++.+.....++.++.++.+||.|+++...
T Consensus 320 ~-Ylg~ilsy~vi~~p~Fs~h~-y~~~s--~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~ 395 (659)
T KOG0060|consen 320 D-YLGGILSYVVIAIPFFSGHV-YDDLS--PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD 395 (659)
T ss_pred H-HHHhhheeeEEeeeeecccc-cCCcC--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 6 88888888888889988863 23333 45666777777778889999999999999999999999999999886554
Q ss_pred hcccCC---------------CCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 422 ELSIED---------------KSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 422 ~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
+..... .....++..+..+.+..|++++|++..|+ +..+++|+||+|+.|+.+.|+||||||||
T Consensus 396 d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 396 DLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKT 475 (659)
T ss_pred HhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchh
Confidence 432110 00011111222334578999999999988 66788999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHH
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLL 564 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~ 564 (1064)
+|+|+++||||..+|++....... -+.+.|+||.||...||+||++.||..... ..+..+|+++.+.|+.+++.+++
T Consensus 476 SLlRvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 476 SLLRVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred HHHHHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999999999999876421 146999999999999999999999965432 23346889999999999999998
Q ss_pred hcCCC-C--cccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc
Q 001511 565 DRYPP-E--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 565 ~~~p~-~--~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
++... + .+.+|.+.||+|||||+++||.++++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++.++|
T Consensus 554 ~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 88642 3 33479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCceEEeecCCC
Q 001511 642 DVVLSLDGEGEWRVHDKRDG 661 (1064)
Q Consensus 642 D~Il~l~~~g~~~~~~~~~~ 661 (1064)
|.++-|+++|+|.+++-+++
T Consensus 634 d~~L~~~g~g~w~~~~I~~q 653 (659)
T KOG0060|consen 634 DYVLRMDGRGSWRFHQIDDQ 653 (659)
T ss_pred hEEEEecCCCceEEEEechh
Confidence 99999999999999855543
No 3
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-78 Score=680.79 Aligned_cols=316 Identities=26% Similarity=0.432 Sum_probs=286.5
Q ss_pred CCCCCCCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhh
Q 001511 731 LKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 810 (1064)
Q Consensus 731 ~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~p 810 (1064)
.+..+..+..++..+.|+.+|..+|+|.|.+.+|+++|++|||||++||.|||++||+||++|.+.|.+.|++|+++|+|
T Consensus 90 e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiP 169 (728)
T KOG0064|consen 90 EPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIP 169 (728)
T ss_pred ccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 34445556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHH
Q 001511 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 890 (1064)
Q Consensus 811 as~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~ 890 (1064)
||||||+|||++++|+|+||+|||+|+|++||+|+|||+|+|+|+|++||||+||+||.+||+++|+||||++||+||++
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHH
Q 001511 891 WFTWRMKALTG---QRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 967 (1064)
Q Consensus 891 ~~~~~l~~~~g---~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~ 967 (1064)
+++++|-++.+ ..|..+.+..+.+++.+||+++|+||+|+++|++++|+|||+|||+|+|+||||||+||++|...+
T Consensus 250 l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql 329 (728)
T KOG0064|consen 250 LISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQV 329 (728)
T ss_pred HHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHH
Confidence 99999988765 445556888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcC---CccccchhH--HHHHHHhHHHHHHhhh
Q 001511 968 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG---DRALVSTQG--EIRMIMNLIHCLDSHL 1042 (1064)
Q Consensus 968 ~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~ 1042 (1064)
+++|++|+.+|+.++++|+||.|+|||++||.|+..|+++|++|.+...+ +....++-+ +-.-|--+-.|+.|+.
T Consensus 330 ~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saA 409 (728)
T KOG0064|consen 330 DESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAA 409 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997432 222223322 2333444555666665
Q ss_pred hccc
Q 001511 1043 SSIT 1046 (1064)
Q Consensus 1043 ~~~~ 1046 (1064)
.+|.
T Consensus 410 dAie 413 (728)
T KOG0064|consen 410 DAIE 413 (728)
T ss_pred HHHH
Confidence 5553
No 4
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.4e-70 Score=669.93 Aligned_cols=562 Identities=34% Similarity=0.608 Sum_probs=455.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
++.+++++++++||+++..++.+++.++++++.+++++.+|.+.+.++|.++.++...|...++.++++++++.+++++.
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998777788888899999999999999999999999987765556655555555556666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
+|+..++..+||.+++++++++||++..+|++.++|++.+|++||+++|++.+++.+...+..++..+++.+.+.+.++.
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999888888877666666655
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
.++|.+++++++++|+..++.+++++++.+.+.+.++.+++++..+.+..+|+++||+|++|+.|.+++++.++++.+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++..+....+.++++..+++... ...+..|.|. +++.+......+..++.|+..+......+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~--~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEE--LMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655554445444444322222222222212222111 1123445553 22322222334566778999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCC--C-CCCC-CC-------------CCCCCCCCCcEEEEeeEEEcCCCCeeeeeceE
Q 001511 404 NRLSGYADRIHELMVISRELSIED--K-SPQR-NG-------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTL 466 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~--~-~~~~-~~-------------~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl 466 (1064)
+++.++++|+.++++.+++...+. . ..+. .. ........+.|+++||++.|++++++|+|+||
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl 473 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceE
Confidence 999999999999998765532110 0 0000 00 00011123569999999999766789999999
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEP 545 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~ 545 (1064)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +++++||||+|+++.+|++||+.++...... ...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999999999999876 4689999999999999999999987532111 112
Q ss_pred CCHHHHHHHHHhcCChhHHhcCCC--CcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001511 546 LTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1064)
Q Consensus 546 ~~~~~i~~~l~~~~L~~~~~~~p~--~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~ 623 (1064)
.+++++.++++.+++++++++ |. ++..+|+.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 457788999999999998887 54 344467889999999999999999999999999999999999999999999988
Q ss_pred cCcEEEEEccChhHHHhcCEEEEEeCCCceE
Q 001511 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 624 ~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~ 654 (1064)
.|+|+|+||||+++++.||++++++++|+|.
T Consensus 628 ~~~tvI~isH~~~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 628 FGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred cCCEEEEEeCchHHHHhCCEEEEEeCCCCcc
Confidence 8999999999999999999999999998885
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.9e-67 Score=638.53 Aligned_cols=529 Identities=19% Similarity=0.241 Sum_probs=415.6
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+.++++.+++|++. +.-.++.+++...+++..|.....++|.+........ +....+.+++..++..+.++
T Consensus 141 ~~~~f~~~~~~~~~~-----l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~t---L~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 141 GLSWFIPLLFKYRRL-----LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRST---LTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred chHhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH---HHHHHHHHHHHHHHHHHHHH
Confidence 467778888888773 4555555666667777888888888887765443221 11112222223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
++.++...+.+++...+..++|+|++++|++||+++ .|+..+|+. |++++.+.+...+...+..++.+++| ..+|++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~-l~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIF-LAVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777888899999999999999999865 678878776 77776555444333322222222222 345677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.|++++++.+|+..++...+.+.+++.+++..+..++......+...++++||+.+.|.+...+|++++.+..+...
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999988888899999999998888888888888889999999999999999999999999999888665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+.....+.+..++..+. ..+++| +|..+. .+..|+|. ++++ ......+.+|+..+...+.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~---~v~iL~----~G~~lVl~~~lTlG~--LiAf----~~l~~~f~~pi~~L~~~~~~~q 437 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLS---SVLILW----FGAILVLEGELTLGQ--LVAF----NMLAGYFISPITRLSQLWTDFQ 437 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHhcCCcchHH--HHHH----HHHHHHHHhHHHHHHHHHHHHH
Confidence 55444444444444433222 223333 333332 34567774 3443 2334556688889999999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
++..+.+|+.++++.++|.+.+... .......+.|+++||+|+|..+ +++|+|+||+|++||++||||+||||
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDKTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCC
Confidence 9999999999999988775422110 1112236789999999999765 56999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.| .++|++||||+||+.+|.+||+|||+++.+. .++|++.++++.
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~------~~~e~i~~A~~~ 585 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE------ATDEEIIEAAQL 585 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999987 4689999999999999999999999998764 578999999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITIS 632 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~It 632 (1064)
+|+++++.++|.++++ +.|.+||||||||++|||||+++|+||||||||||||+++|+.+++.+.+. |+|+|+||
T Consensus 586 ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~Ia 665 (709)
T COG2274 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665 (709)
T ss_pred hCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999998776 468899999999999999999999999999999999999999999999875 69999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001511 633 HRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1064)
||+++++.||+|+||+++
T Consensus 666 HRl~ti~~adrIiVl~~G 683 (709)
T COG2274 666 HRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccchHhhhccEEEEccCC
Confidence 999999999999999975
No 6
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-66 Score=640.76 Aligned_cols=535 Identities=18% Similarity=0.192 Sum_probs=404.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.+++|++++.+|+|. .+++.++.++++-+....++++.++++......+.+...+....+.+++++++++..+.+
T Consensus 650 ~s~~~i~k~~~pe~~-----~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWP-----YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccHHHHHHhccchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999877 466666677777777778899999999988755533332211113333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~--~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
+++.++-...-++++.|+|.+.|+++++++++|||.. .+.+.+|+.+|...+...+.+-+..++..+... +.+..+.
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~-~~~iiia 803 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAV-IIGIIIA 803 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4444443334444999999999999999999999852 367889999999988777776666665555432 3344566
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001511 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1064)
Q Consensus 244 ~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1064)
++++|.+++++++..|++.+......+.+.....+..+...+......+..+|+++|++|++|++..+.+.+..+. .
T Consensus 804 f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~---p 880 (1228)
T KOG0055|consen 804 FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEK---P 880 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH---H
Confidence 7889999999999999888877766666666666666666677788889999999999999999886444433333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
.+...+..++.++...+.+.++....++.++ +|+.+. .+..+... ++.. + ..+......++.......+
T Consensus 881 ~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~----~G~~Li~~g~~~~~~--~~~v---f-~~l~~ta~~~~~~~s~~Pd 950 (1228)
T KOG0055|consen 881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFW----YGARLISNGEMTFED--VFRV---F-MALSFTAMALGQASSYAPD 950 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHhcCCcCHHH--HHHH---H-HHHHHHHHHHHHHHhhCcH
Confidence 2333455566666555544444444444444 444443 23334332 1111 1 1122222345566667778
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCC
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
+.++..++.+++++++.++.++.++. .........+.|+++||+|.||.. .++|+|+||+|++|+.+||||||
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i~~~~~-----~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTIDPDST-----SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC-----CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 89999999999999998875542210 111112236789999999999964 47999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
||||||++.+|.++|+|++|.|.+||.| ..+|++||.|.|+|.||++||+|||+||.. +.+.+++.++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~------~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE------EVSEEEIIEA 1099 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC------CCCHHHHHHH
Confidence 9999999999999999999999999986 457999999999999999999999999922 1578999999
Q ss_pred HHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.+++++|+..+|+++++. .|.+||||||||||||||+++||+||||||+|||||.++|+.++++|++ .|+|+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 99999999999999987763 6899999999999999999999999999999999999999999999987 499999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+||++++++||.|.|++++
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred EEecchhhhhcCCEEEEEECC
Confidence 999999999999999999975
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.8e-66 Score=631.16 Aligned_cols=532 Identities=15% Similarity=0.176 Sum_probs=395.2
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR--RVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+++++++++|+++. ++..+++.++...+....|++.++++|.+... +...++. .+++++++.++..+..
T Consensus 10 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (588)
T PRK11174 10 TRWLKQQSKPAKRW-----LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVLRALLA 80 (588)
T ss_pred hHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHHHHHHH
Confidence 67788999998874 55566666677778888899999999876532 2111211 1222222233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
|+..++..+....+..++|.++|+|+.+.|.++|++. .++..+|+++|++.+.+.+...+..++..++..+ ...++++
T Consensus 81 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~ 159 (588)
T PRK11174 81 WLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPL-LILIAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666666666666888999999999999999999774 6799999999999988777666655555544332 2334566
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++...+.++.++...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888888877777777888888888787888888888888888999999999999999877777666665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccccCCccchhHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP-FFAGNLKPDTSTLGRA--KMLSNLRYH-TSVIISLFQSLGTLSISS 400 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~-~~~g~l~~~~~tlG~~--~l~a~l~~~-~~~l~~~~~~i~~l~~~~ 400 (1064)
.+..+.. .....+........+.+++++.. ++.|.+ ++|.. .+..+..++ ..+...++.|+..+....
T Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~ 311 (588)
T PRK11174 240 MEVLRMA---FLSSAVLEFFASISIALVAVYFGFSYLGEL-----NFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFY 311 (588)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccccccccchHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3332222 11222211111111111111110 111222 33321 001111111 123345668888888889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCC
Q 001511 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
..+.++..+++|+.++++.+++... ....+ ......+.|+++||+|.|++++++|+|+||+|++||+++|||||
T Consensus 312 ~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~-----~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~S 385 (588)
T PRK11174 312 HAKAQAVGAAESLVTFLETPLAHPQ-QGEKE-----LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPS 385 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccC-CCccc-----cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCC
Confidence 9999999999999999976543211 00000 00011246999999987766678999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|+|+| |++|+|.+||.+ +++|++|+||||+|++|++||+|||.++.+. .+++++.++
T Consensus 386 GsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~------~~~eei~~a 458 (588)
T PRK11174 386 GAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD------ASDEQLQQA 458 (588)
T ss_pred CCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC------CCHHHHHHH
Confidence 999999999999999 899999999975 4678999999999999999999999997532 578999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.++++++++++|.++++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|
T Consensus 459 l~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI 538 (588)
T PRK11174 459 LENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538 (588)
T ss_pred HHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999986665 36889999999999999999999999999999999999999999998876 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||+++++.+|+|++++++
T Consensus 539 iItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 539 MVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred EEecChHHHHhCCEEEEEeCC
Confidence 999999999999999999874
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.5e-65 Score=632.87 Aligned_cols=530 Identities=20% Similarity=0.223 Sum_probs=402.6
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
...+++++++++|+++. ++..+++.++.+.+....|.+.+.++|.+..+. ...+...++..++ +.++..+
T Consensus 146 ~~~~~~l~~~~~~~~~~-----l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 216 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPW-----LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCL----LSIASSV 216 (711)
T ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHH
Confidence 34578889999988763 556666777777888899999999999887543 2333332222222 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
..++...+......++..++|.++|+++.+.|+++|++. .++..+|+++|++.+.+.+...+..++..++..+. ...+
T Consensus 217 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~-~~~~ 295 (711)
T TIGR00958 217 SAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLG-LLGF 295 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444444455555888899999999999999999764 67999999999999887776666555555543332 3344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
+++++|.+++++++.+|+..++...++++..+...+.++..++++....+..+++++||.|+.|+.+.+++++..++..+
T Consensus 296 l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 375 (711)
T TIGR00958 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375 (711)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56789999999888888888888888899988888888888898888899999999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
...+.............++. .....++++ +++.+ ..+..+.|. +++++. +...+..++..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~---~~~~~~il~----~g~~lv~~g~it~G~--lva~~~----~~~~l~~~l~~l~~~~~ 442 (711)
T TIGR00958 376 LNKRKALAYAGYLWTTSVLG---MLIQVLVLY----YGGQLVLTGKVSSGN--LVSFLL----YQEQLGEAVRVLSYVYS 442 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHH
Confidence 54333222111111111111 111111222 22222 123445653 334332 33456678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGP 479 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~ 479 (1064)
.+++..++.+|+.++++.+++.+.+... ......+.|+++||+|.|++ ++++|+|+||+|++||+++||||
T Consensus 443 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~-------~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~ 515 (711)
T TIGR00958 443 GMMQAVGASEKVFEYLDRKPNIPLTGTL-------APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGP 515 (711)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCC-------CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECC
Confidence 9999999999999999865543211100 00112356999999999985 35899999999999999999999
Q ss_pred CCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH
Q 001511 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1064)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1064)
||||||||+++|+|+|+|++|+|.+||++ .++|++|+||||+|++|++||+|||.++.+. .+++++.+
T Consensus 516 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~ 589 (711)
T TIGR00958 516 SGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMA 589 (711)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC------CCHHHHHH
Confidence 99999999999999999999999999975 3578899999999999999999999998543 46889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEE
Q 001511 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630 (1064)
Q Consensus 554 ~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ 630 (1064)
+++.++++++++++|.+.++ ++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.....++|+|+
T Consensus 590 al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIi 669 (711)
T TIGR00958 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669 (711)
T ss_pred HHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEE
Confidence 99999999999999986554 367899999999999999999999999999999999999999999844446899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++++.+|+|++|+++
T Consensus 670 ItHrl~~i~~aD~IivL~~G 689 (711)
T TIGR00958 670 IAHRLSTVERADQILVLKKG 689 (711)
T ss_pred EeccHHHHHhCCEEEEEECC
Confidence 99999999999999999874
No 9
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=4.2e-65 Score=599.02 Aligned_cols=544 Identities=28% Similarity=0.469 Sum_probs=444.1
Q ss_pred HHHHHHHHHhhchhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKM----GARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~----~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
..++++.+.++||.+. .+..+++++++.++.+..+++++.|.+.|++++...+...|+..+..+.++..+...+..
T Consensus 25 ~~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v 104 (604)
T COG4178 25 LGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNV 104 (604)
T ss_pred HHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777766543 333344555566666677778999999999999999988888887776666665556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD--GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~--~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
...|+...+..+||+|+++++.++|+++..+|...+.+ ..++||||||++|+..+++...++..+++.++++.+.|+.
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998886 4569999999999999999999999999998888877766
Q ss_pred HHHH-------------HhhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 001511 241 RLCS-------------YASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGE 306 (1064)
Q Consensus 241 ~l~~-------------~~~~~L~li~-l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e 306 (1064)
+|+. +..|++++++ ++|+++..+++.+++|++.+++.++++.|++||+.+.++++|+|.|++|+||
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 6651 3466677665 5667777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHH
Q 001511 307 NKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVI 386 (1064)
Q Consensus 307 ~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l 386 (1064)
+.|+.+++++|..+.+++++..........++..+.. +...+++++..+.|+.|.+ ++|..+ ...+.+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~-~s~v~P~li~ap~~f~g~i-----~~G~lm------qa~~aF 332 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW-LSVVLPILIAAPRYFSGQI-----TFGGLM------QAVGAF 332 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH-HHHHHHHHhccHhhhcCcC-----hHHHHH------HHHHHH
Confidence 9999999999999999998887777667766665442 3334555555566777665 555322 123345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCC--CCcEEEEeeEEEcCCCCeeeeec
Q 001511 387 ISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENL 464 (1064)
Q Consensus 387 ~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~nvs~~y~~~~~~L~~v 464 (1064)
.....+++.+...+.++....+...|+.++.+.-.....+............... ...|+++|+++..|++++.+++.
T Consensus 333 ~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l 412 (604)
T COG4178 333 GQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSEL 412 (604)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccc
Confidence 6666788888888889999999999998886543311111100001000000111 46799999999999889999999
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC
Q 001511 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1064)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1064)
||++++||.+.|.||||||||||+|+|+|+||..+|+|.++.. ..+.|+||.||++.||+||.|+||....
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----~~~lflpQ~PY~p~GtLre~l~YP~~~~---- 483 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----SALLFLPQRPYLPQGTLREALCYPNAAP---- 483 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----CceEEecCCCCCCCccHHHHHhCCCCCC----
Confidence 9999999999999999999999999999999999999998842 3689999999999999999999997653
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA- 623 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~- 623 (1064)
..+|+++.++|.++||+++.+++ +....|...||+|||||||+||.|+++|++++|||+|||||+++|..+++++++
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 26889999999999999999995 344569999999999999999999999999999999999999999999999998
Q ss_pred -cCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001511 624 -MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 624 -~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1064)
.+.|+|.|+||.....++++.+.+++++++
T Consensus 562 lp~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 562 LPDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred CCCCEEEEeccchhhHHHHhhheeecccccc
Confidence 699999999999999999999999887655
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.2e-64 Score=624.05 Aligned_cols=535 Identities=19% Similarity=0.229 Sum_probs=402.6
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.++.++++++++++. ++..+++.++...++...|.+.+.++|.+...+.... +....+.++++.++..+..+
T Consensus 141 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 141 LLRALWRRLRGSRGA-----LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDW---LRPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456777788888763 4445555556667777889999999998775432221 11111122222334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..++..++..+++.++|+++.++|+++|+++ .++..+|+++| +.+.+.+...+...+..++..+++ ..++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 290 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLL 290 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777889999999999999999999765 67999999988 666666555444444444333332 244567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.+++++++.+++..++..++.++..+...+.++..++......+...++++||.++.|+.+.+++.+.+.+..+...
T Consensus 291 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 370 (710)
T TIGR03796 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQ 370 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888877778888888888888888888888888888888999999999999999888888877776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+...+...+..++. .....++++ +++.. ..+..|+|. +++++ .+...++.|+..+.....+++
T Consensus 371 ~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~~v~~g~lt~G~--lva~~----~l~~~~~~p~~~l~~~~~~~~ 437 (710)
T TIGR03796 371 ELGVLTQILGVLPTLLT---SLNSALILV----VGGLRVMEGQLTIGM--LVAFQ----SLMSSFLEPVNNLVGFGGTLQ 437 (710)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44332222222222221 111122222 22222 123456664 34433 234556678888888999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
++..+.+|+.++++.+++....................+.|+++||+|+|++ ++++|+|+||+|++||+++||||||||
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsG 517 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSG 517 (710)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCC
Confidence 9999999999999876543211100000000000112457999999999985 468999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.
T Consensus 518 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~------~~~~~i~~al~~ 591 (710)
T TIGR03796 518 KSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT------IPDADLVRACKD 591 (710)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999976 3578999999999999999999999986432 578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccC
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR 634 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~ 634 (1064)
++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+++.+.+++.++|+|+||||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHr 671 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHR 671 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9999999999986654 4688999999999999999999999999999999999999999999998889999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001511 635 PALVAFHDVVLSLDGE 650 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1064)
+++++.+|+|++|+++
T Consensus 672 l~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 672 LSTIRDCDEIIVLERG 687 (710)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 9999999999999874
No 11
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.2e-64 Score=623.65 Aligned_cols=531 Identities=17% Similarity=0.184 Sum_probs=402.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
..+++++++++++++. ++..++++++..++++..|.+.+.++|.+........ +....++++++.++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~ 213 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-----IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGT---LGIISIGLIIAYIIQQILS 213 (708)
T ss_pred chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH---HHHHHHHHHHHHHHHHHHH
Confidence 3466778888887763 4455556666677778889999999988764432111 1111111222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..++..++..+++.++|+++.++|+++|+++ .++..+|++ |++.+.+.+...+...+..++..+++ ..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 291 (708)
T TIGR01193 214 YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIV-GLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666777777777889999999999999999999765 679999998 88887766555444433333322222 23456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++...+.++.++...+.++..++......+..+++++||+++.|+.+.+++++.+.+..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 68999999998888888888888889998888888888888888888888899999999999999988888887777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++. .....++++ +++.+ ..+..|+|. ++++.. +...++.|+..+.....++
T Consensus 372 ~~~~~~~~~~~~~~~~~~---~~~~i~il~----~g~~lv~~g~ls~G~--lva~~~----l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTK---LILNVVILW----TGAYLVMRGKLTLGQ--LITFNA----LLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 443322222222222211 111112222 22222 134456664 444332 3345667888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
+++..+.+|+.++++.+++...+... . ......+.|+++||+|.|++++++|+|+||+|++||+++|+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~~~-~-----~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsG 512 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKKKR-T-----ELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSG 512 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccc-c-----CCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCC
Confidence 99999999999999866543211100 0 01112457999999999986678999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+++|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++... ..+++++.++++.
T Consensus 513 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-----~~~~~~i~~a~~~ 587 (708)
T TIGR01193 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-----NVSQDEIWAACEI 587 (708)
T ss_pred HHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-----CCCHHHHHHHHHH
Confidence 9999999999999999999999975 4678999999999999999999999987321 2578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCcEEEEEcc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISH 633 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-~g~TvI~ItH 633 (1064)
++++++++++|.++++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .|+|+|+|||
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitH 667 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999986654 46889999999999999999999999999999999999999999998876 4899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.+|+|++|+++
T Consensus 668 r~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 668 RLSVAKQSDKIIVLDHG 684 (708)
T ss_pred chHHHHcCCEEEEEECC
Confidence 99999999999999874
No 12
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.9e-64 Score=603.01 Aligned_cols=515 Identities=19% Similarity=0.196 Sum_probs=376.4
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1064)
Q Consensus 89 ~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1064)
++++++++++++. ++..+++.++.+.+.+..|.+.++++|.....+. .+. . ...++.+++..++..+..|+.
T Consensus 2 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~ 73 (529)
T TIGR02868 2 LRILPLLQPRTRR-----LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY-L-SVAAVAVRAFGIGRAVFRYLE 73 (529)
T ss_pred hhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887763 4455556666677778889999999987764332 111 1 111111111223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1064)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~ 247 (1064)
.++..+...++..++|.++|+++++.|.++|++. .++..+|+++|++.+...+...+..++..++..++ ...++++++
T Consensus 74 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 152 (529)
T TIGR02868 74 RLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA-AVAAIALLS 152 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 7777677777888999999999999999999764 67999999999999887777666555555443322 234556789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 248 PKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 248 ~~L~li~l~~~~l~~~i~~~~~~~~-~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
|.+++++++.+|+..++..++.++. ++..++.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+
T Consensus 153 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02868 153 VPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877776666665555554 444555666777788888888889999999999999987777766655544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~ 405 (1064)
.. +..+....+..........++++ +++.. ..+..+.|. +.+++.+ ...++.++..+......+++
T Consensus 233 ~~---~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~t~g~--l~~~~~~----~~~~~~~~~~l~~~~~~~~~ 299 (529)
T TIGR02868 233 AA---RATGLGAAAQLLAAGLAVLGALW----AGGPAVADGTLAPAT--LAVLVLL----PLAAFEAFAPLPAAAQALTR 299 (529)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCChhH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 22 22232222222111222222222 22222 223445553 3343322 33455677777778889999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
...+.+|+.++++.+++....... .+ .......+.|+++||+|.|++++++|+|+||++++||+++||||||||||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~--~~--~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 300 VRAAAERIEEVTGAKGPRPEGVVP--AA--GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCC--CC--cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHH
Confidence 999999999999766542211100 00 00111234699999999998767899999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++
T Consensus 376 TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~------~~~e~i~~al~~a~l 449 (529)
T TIGR02868 376 TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD------ATDEELWAALERVGL 449 (529)
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC------CCHHHHHHHHHHcCC
Confidence 99999999999999999999976 3578899999999999999999999997532 578899999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccCh
Q 001511 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRP 635 (1064)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l 635 (1064)
+++++++|+++++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+.+++.+++. ++|+|+||||+
T Consensus 450 ~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 450 ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999986665 468899999999999999999999999999999999999999999998764 89999999985
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-63 Score=606.60 Aligned_cols=529 Identities=19% Similarity=0.232 Sum_probs=393.0
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP---LFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~---~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
+++++++++|+++. ++..+++.++...+....|.+.++++|.....+.. .+.. ++ ..++++++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWFM-----LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-ML-PAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-Hh-HHHHHHHHHHHHHHH
Confidence 56777888888763 55556666666778888999999999976532211 1111 11 111121222334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
.|+..++..+....+..++|.++|+|+...|.+++++ ..++..+|+++|++.+...+...+..++..++..+ .+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~-~~~~~l 155 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVIL-VLTIGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5666666666666688899999999999999999976 46799999999999998887776666665554432 233456
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 244 SYASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 244 ~~~~~~L~li~l~~~~l~~~i~-~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
++++|.+++++++.+|+..+++ ..+.+..++..++.++..+++.....+...++++||+|+.|+.+.+++++..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 7789999998877776655443 445666677777778888888888888888999999999999998877777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
...+..+ ..+....+........++++++ +++....+..+.|. +++++.+.. ...++++..+......
T Consensus 236 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~----~g~~~~~g~~t~g~--l~a~~~~~~---~~~~~~~~~l~~~~~~ 303 (574)
T PRK11160 236 AQRRQAN---LTGLSQALMILANGLTVVLMLW----LAAGGVGGNAQPGA--LIALFVFAA---LAAFEALMPVAGAFQH 303 (574)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccchhH--HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4443332 2222222222222222222222 22222234445553 334332221 2223455666677788
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCC
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sG 481 (1064)
+++...+++|+.++++.+++...+.... .....+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~~~~~~~~-------~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEVTFPTTST-------AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccC-------CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 8999999999999998765432111000 01123579999999999764 579999999999999999999999
Q ss_pred CchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHH
Q 001511 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1064)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1064)
||||||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.+++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~al 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN------ASDEALIEVL 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc------cCHHHHHHHH
Confidence 999999999999999999999999975 3578899999999999999999999987542 5788999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001511 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1064)
Q Consensus 556 ~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1064)
+.+++++++++ |+++++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 987665 36889999999999999999999999999999999999999999998876 3899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++++.+|+|++|+++
T Consensus 530 itHr~~~~~~~d~i~~l~~G 549 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNG 549 (574)
T ss_pred EecChhHHHhCCEEEEEeCC
Confidence 99999999999999999874
No 14
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-64 Score=617.73 Aligned_cols=531 Identities=19% Similarity=0.192 Sum_probs=394.6
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHH----HHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLF----FQLISENILLCFLLSTMH 161 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~----~~~l~~~~~l~~~~~~~~ 161 (1064)
..+..|+++...+-. .+++...+.+++.-.....+..+.+.+++.+........ .+..+.++.+.+++.+..
T Consensus 13 ~~~~~lf~~a~~~D~----~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~ 88 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDY----LLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISG 88 (1228)
T ss_pred cchHHheeccchhhH----HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443322 234444445555444445677778888887765442111 111122222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
++...+....++| ...++|.+|++.+++++++|||.. .++..+|+++|++.+.+.+.+-+..++..+.+ ++.++
T Consensus 89 ~~q~~c~~~~geR----q~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~-fi~g~ 163 (1228)
T KOG0055|consen 89 FIQVSCWMRTGER----QTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLAT-FIAGF 163 (1228)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444445555555 888999999999999999999975 57999999999999998888777766655543 33345
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001511 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1064)
Q Consensus 241 ~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1064)
++.++..|.++++++.+.|++.+....+.+.+.+...+++...++.....++..++++++.+|++|+.|.+ +|.+.
T Consensus 164 ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~ 239 (1228)
T KOG0055|consen 164 VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKA 239 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHH
Confidence 66778899999999999999999888889999999999999999888999999999999999999999974 44444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 321 TRHMRV-VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
.+..++ ..+...+.++..++...++....+..+| +|+.+. .+..+.|.. +.. +..++ ..-.+++....
T Consensus 240 L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~W----yG~~li~~~~~~~g~v--~~v---~~~vl-~g~~sLgqa~p 309 (1228)
T KOG0055|consen 240 LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFW----YGSTLILNGGYNGGDV--ITV---FFSVL-IGGMSLGQASP 309 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCceE--EEE---Eeehh-hhhhhhhcccc
Confidence 443332 2445555555544443333333444444 442322 112222210 000 00111 11124555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCC--eeeeeceEEEeCCCEEEE
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN--VLVENLTLKVEPGSNLLI 476 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~--~~L~~vsl~i~~Ge~vaI 476 (1064)
....+..+.+++.+|+++++..+...... . .........+.|+|+||+|+||..+ ++|+|+||+|++|++++|
T Consensus 310 ~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~----~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 310 HLSAFAKARAAAYRIFETIDRKPSIDPYS-K----GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred chHHHhccccchHHHHHHhcCCCCCCccc-c----cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 66677888999999999998766544211 0 1111222467899999999999754 799999999999999999
Q ss_pred EcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
||||||||||++++|.|+|+|++|+|.+||.| +.+|.+||.|+|+|.+|.+||+|||.|+.++ +++++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d------at~~~ 458 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD------ATREE 458 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc------ccHHH
Confidence 99999999999999999999999999999986 4679999999999999999999999999764 68899
Q ss_pred HHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cC
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g 625 (1064)
+.++++.++.++|+..+|.++++ +.|.+|||||||||||||||+++|+||||||||||||+++|+.++++|++ .|
T Consensus 459 i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~g 538 (1228)
T KOG0055|consen 459 IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKG 538 (1228)
T ss_pred HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987665 46889999999999999999999999999999999999999999999986 49
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001511 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|.|+||||+++++++|+|++|+++
T Consensus 539 rTTivVaHRLStIrnaD~I~v~~~G 563 (1228)
T KOG0055|consen 539 RTTIVVAHRLSTIRNADKIAVMEEG 563 (1228)
T ss_pred CeEEEEeeehhhhhccCEEEEEECC
Confidence 9999999999999999999999975
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.7e-63 Score=615.93 Aligned_cols=524 Identities=20% Similarity=0.199 Sum_probs=396.7
Q ss_pred HHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAI-LLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 88 l~rL~~~-~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+++++++ ++++++. ++..+++.++...+++..|...+.++|.+.... ...++. ..+.++++.++..+..
T Consensus 123 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 123 LRDLLRFALRGARRD-----LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQ 193 (686)
T ss_pred HHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 4555555 5666553 455556666667788888999999998876433 221111 1222222233344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..++...+..+++..+|+++.+.|+++|+++ .++..+|++ |++.+.+.+...+...+..++..++ ...+++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~ 271 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666666666677888999999999999999999875 679999997 7887766655544333333322222 234556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+++..++..++.++..+...+.++..++......+..+++++||.++.|+.+..+|++.+++..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888877777777777888888888888888888888888899999999999999999988888888877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+...+...+..++. .....++++ +++.+ ..+..|+|. ++++.. +...++.|+..+...+.++
T Consensus 352 ~~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~ltiG~--lva~~~----l~~~~~~pl~~l~~~~~~~ 418 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLP---VLTSAALFA----AAISLLGGAGLSLGS--FLAFNT----AFGSFSGAVTQLSNTLISI 418 (686)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 544333333332222221 111222222 22222 134456664 344332 3345567888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGS 482 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGs 482 (1064)
+++..+.+|+.++++.+++...+. . ......+.|+++||+|+|++ ++++|+|+||+|++||+++|+|||||
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~~~~-~-------~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGs 490 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVDEAK-T-------DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGS 490 (686)
T ss_pred HHHHHHHHHHHHHhcCCcccccCc-C-------CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCC
Confidence 999999999999987655432110 0 00112357999999999964 46899999999999999999999999
Q ss_pred chhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHH
Q 001511 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1064)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1064)
|||||+|+|+|+|+|++|+|.+||++ .++|++|+||||||++|++||+|||.++.+ .+++++.++++
T Consensus 491 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~ 563 (686)
T TIGR03797 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAAR 563 (686)
T ss_pred CHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999975 367899999999999999999999998743 36889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEcc
Q 001511 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633 (1064)
Q Consensus 557 ~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH 633 (1064)
.++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+++.+.+++.++|+|+|||
T Consensus 564 ~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItH 643 (686)
T TIGR03797 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH 643 (686)
T ss_pred HcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEec
Confidence 99999999999987655 468899999999999999999999999999999999999999999999888899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.+|+|++|+++
T Consensus 644 r~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 644 RLSTIRNADRIYVLDAG 660 (686)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999874
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.5e-63 Score=615.68 Aligned_cols=529 Identities=18% Similarity=0.207 Sum_probs=399.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+++++++++++++. +...++++++.+.++...|.+.+.++|.+........ ++..+++++++.++..+..+
T Consensus 134 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 134 PKHWFWSTLKESWPL-----YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFET---LWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred cchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677788887763 4445555566667777889999999988764332211 11111222222333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~ 246 (1064)
+..++..+...++..+++..+|+|+.++|+++.....++..+|+ +|++.+.+.+...+...+..++..+++ ..+++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 283 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLF-LLVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 77777777777788999999999999999998544567899998 799988776655443333333323232 2345678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 247 ~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
+|.+++++++.+|+..++...+.++..+...+..+..++......+..+++++||.|+.|+.+.+++++.+++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888999888888888888888888888899999999999999998888888777665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~ 405 (1064)
..+.......+..++ ......++++ +++.. ..+..|+| .+++++. ++..++.|+..+.....+++.
T Consensus 364 ~~~~~~~~~~~~~~~---~~~~~~~il~----~g~~~v~~g~ls~G--~l~a~~~----~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 364 SRFLSNLATNFAQFI---QQLVSVAIVV----VGVYLISDGELTMG--GLIACVM----LSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222221 1111122222 22222 12345665 3444332 344556788888888999999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
...+.+|+.++++.+++....... .......+.|+++||+|+|++ ++++|+|+||+|++||+++|+|||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~~~------~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGK 504 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGTRF------LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGK 504 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCC------CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCH
Confidence 999999999999876543211100 000112357999999999975 4679999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+
T Consensus 505 STLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~------~~~~~i~~a~~~~ 578 (694)
T TIGR03375 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY------ADDEEILRAAELA 578 (694)
T ss_pred HHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC------CCHHHHHHHHHHc
Confidence 999999999999999999999975 4678999999999999999999999987542 5788999999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH 633 (1064)
+++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+|||
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999999986655 468899999999999999999999999999999999999999999988764 899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.||+|++|+++
T Consensus 659 rl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 659 RTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CHHHHHhCCEEEEEeCC
Confidence 99999999999999874
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.1e-62 Score=600.10 Aligned_cols=532 Identities=17% Similarity=0.209 Sum_probs=397.1
Q ss_pred ChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 84 ~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
.|+.+++++++++++++. ++..+++.++...+....+.+.+.+++.+.......+...+ .++++++.++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 80 (582)
T PRK11176 9 TWQTFRRLWPTIAPFKAG-----LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWM---PLVVIGLMILRGI 80 (582)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH---HHHHHHHHHHHHH
Confidence 355567788888887663 44444555555566667788888888877643322221111 1111112233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
..++..++..+....+..+++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+++ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (582)
T PRK11176 81 TSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGL-FIM 159 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 455555555555566788899999999999999998764 679999999999998877666665555555443332 344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
+++++|.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+
T Consensus 160 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 239 (582)
T PRK11176 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQ 239 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 56679999998888777777777778888888888888888888888888888999999999999999888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
...+..+...+...+..++. .....++++ +++.. ..+..++|.. ++++ .++..++.|+..+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~g~~~~~~g~is~g~~--~~~~----~~~~~~~~pl~~l~~~~~ 306 (582)
T PRK11176 240 QGMKMVSASSISDPIIQLIA---SLALAFVLY----AASFPSVMDTLTAGTI--TVVF----SSMIALMRPLKSLTNVNA 306 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHHH--HHHH----HHHHHHHHHHHHHHHHHH
Confidence 55444333322222222221 111111222 12221 2234566643 2222 223446678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
.+++...+.+|+.++++.+++..... . ......+.|+++||+|.|+++ +++|+|+||+|++||.++|+|||
T Consensus 307 ~~~~~~~~~~ri~~~~~~~~~~~~~~--~------~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~s 378 (582)
T PRK11176 307 QFQRGMAACQTLFAILDLEQEKDEGK--R------VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRS 378 (582)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCC--c------CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCC
Confidence 99999999999999987554321110 0 001123469999999999764 68999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|+|+++|++|+|.+||.+ .++|+.|+||||+|++|++|++|||.++.+. ..+++++.++
T Consensus 379 GsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~a 453 (582)
T PRK11176 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-----QYSREQIEEA 453 (582)
T ss_pred CCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-----CCCHHHHHHH
Confidence 9999999999999999999999999975 3568899999999999999999999987532 2478899999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.+|++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||++++..+.+.+.+ .++|+|
T Consensus 454 l~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI 533 (582)
T PRK11176 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533 (582)
T ss_pred HHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999986655 46889999999999999999999999999999999999999999998876 479999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||++.++.||+|++++++
T Consensus 534 ~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 534 VIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred EEecchHHHHhCCEEEEEECC
Confidence 999999999999999999874
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-62 Score=598.25 Aligned_cols=524 Identities=23% Similarity=0.296 Sum_probs=391.6
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl 167 (1064)
+++++.+.+ ++ . ++..+++.++.+.++...+.+.+.+++.+. .............+++.++..++.....++
T Consensus 4 ~~~l~~~~~-~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (567)
T COG1132 4 LRRLLKYLK-YK-L-----LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYL 75 (567)
T ss_pred HHHHHHHHH-HH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555655 33 2 444555555567788888999999998887 222222222222222222223334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1064)
Q Consensus 168 ~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~ 246 (1064)
...++ ..+..++|.++|+++.++|+++|++. .++..+|+++|++.+...+......+...++.. +....++++.
T Consensus 76 ~~~~~----~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (567)
T COG1132 76 GSRLG----QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSL 150 (567)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 55554 45788899999999999999999875 579999999999998877666533333233222 2234556678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 247 ~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
+|.+++++++.+|+..++..+++++..+...+.++..+++.....+..++++.||.|+.++.+.+++.+..++......+
T Consensus 151 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~ 230 (567)
T COG1132 151 SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888877888888888888888888888999999999999999876555555544443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~ 406 (1064)
..++.+...++...+.......+++++.+. ...+..++|. +.+++ .+...++.++..+......+++.
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~--~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 298 (567)
T COG1132 231 ---ASRLEALLAPLMLLLSSLGTVLVLALGGFL---VLSGSLTVGA--LAAFI----LYLLRLLTPILQLGEVVSLLQRA 298 (567)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222222222221111 1122234553 33433 33455667888888999999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhH
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKST 486 (1064)
..+++|++++++.+++....... .....+.|+|+||+|.|++++++|+|+||++++||++||||||||||||
T Consensus 299 ~~a~~ri~~~l~~~~~~~~~~~~--------~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 299 SAAAERLFELLDEEPEVEDPPDP--------LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHcCCccccCCCCC--------CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999876553321110 1112456999999999987789999999999999999999999999999
Q ss_pred HHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 487 Ll~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
|+++|+|+|+|++|+|.+||+| .++|++|++|||||++|++||+|||.++.+. .+++++.++++.+++
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~ 444 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANA 444 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhCh
Confidence 9999999999999999999976 4689999999999999999999999998754 578999999999999
Q ss_pred hhHHhcCCCCccc--C-CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccCh
Q 001511 561 EYLLDRYPPEKEI--N-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1064)
Q Consensus 561 ~~~~~~~p~~~~~--~-~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l 635 (1064)
++++.++|.++++ + .|..||||||||++||||++++|+++|||||||+||+++|..+++.+++ .++|+|+|+||+
T Consensus 445 ~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 445 HEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred HHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 9999999976554 3 6789999999999999999999999999999999999999999998864 478999999999
Q ss_pred hHHHhcCEEEEEeCC
Q 001511 636 ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 636 ~~i~~~D~Il~l~~~ 650 (1064)
++++.||+|+|||++
T Consensus 525 sti~~aD~IiVl~~G 539 (567)
T COG1132 525 STIKNADRIIVLDNG 539 (567)
T ss_pred hHHHhCCEEEEEECC
Confidence 999999999999976
No 19
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5e-61 Score=628.78 Aligned_cols=533 Identities=14% Similarity=0.162 Sum_probs=381.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+.++++|..+..+. .+++.++++++...+...++.+.+.+++.+.... .....++ .++++.++..+..|
T Consensus 46 ~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~----~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 46 PFFLPFKCLPASHRK----LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIF----SLVLIGIFQFILSF 115 (1466)
T ss_pred cHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHH
Confidence 466777777543221 3555566666666677788888888888654221 1111111 11112222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-CChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRI-THPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~-~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++......++..++|.++|++++++|++||+... +...+|+++|++.+...+...+..++..++. ++.+++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~-~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASA-FLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444444555558889999999999999999998764 4778888888888777766666666555443 2344566778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.|++++++.+|+..++..++.+++.+...+.++..++.....++...++++||+|++|+.+.+++++..++..+..
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~- 273 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI- 273 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH-
Confidence 9999999999988988888888888887777777777788888999999999999999999999866655444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC---------CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP---------DTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~---------~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l 396 (1064)
.+.....++..++...+.....+++++ +|+.+.. +..+.| .+++.+.+. +. .+..+..+
T Consensus 274 --~k~~~~~~~~~~~~~~~~~~~~~l~~~----~G~~lv~~g~~~~~~~~~~t~g--~v~~~~~~~---l~-~~~~l~~i 341 (1466)
T PTZ00265 274 --LKANFMESLHIGMINGFILASYAFGFW----YGTRIIISDLSNQQPNNDFHGG--SVISILLGV---LI-SMFMLTII 341 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCcccccccccchh--HHHHHHHHH---HH-HHHHHHHH
Confidence 223333343333332222223333333 3332221 122333 233322111 11 11223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEE
Q 001511 397 SISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNL 474 (1064)
Q Consensus 397 ~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~v 474 (1064)
......++.+..+++|++++++.+++....... .. ....+.|+++||+|.|++. .++|+|+||+|++||++
T Consensus 342 ~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~------~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 342 LPNITEYMKSLEATNSLYEIINRKPLVENNDDG------KK-LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC------cc-CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 556678888999999999999876543211100 00 0112369999999999753 47999999999999999
Q ss_pred EEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCC------
Q 001511 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------ 541 (1064)
Q Consensus 475 aIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------ 541 (1064)
+|+||||||||||+++|+|+++|++|+|.++ |.+ ..+|++|+||||+|.+|++||+|||.++.....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 9999999999999999999999999999994 554 246889999999999999999999998742100
Q ss_pred ---------------------------------------------cCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001511 542 ---------------------------------------------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1064)
Q Consensus 542 ---------------------------------------------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~--- 573 (1064)
.....+++++.++++.++++++++++|.++++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 00124678899999999999999999987654
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
..|.+|||||||||+|||||+++|+|||||||||+||+.++..+++.+++ .|+|+|+||||+++++.||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 35789999999999999999999999999999999999999999988865 37999999999999999999999987
Q ss_pred C
Q 001511 650 E 650 (1064)
Q Consensus 650 ~ 650 (1064)
+
T Consensus 655 g 655 (1466)
T PTZ00265 655 R 655 (1466)
T ss_pred C
Confidence 4
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.2e-62 Score=595.17 Aligned_cols=533 Identities=17% Similarity=0.161 Sum_probs=391.6
Q ss_pred ccChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 001511 82 KGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH 161 (1064)
Q Consensus 82 ~~~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~ 161 (1064)
++-|+.+++++++.+++++. ++..+++.++.+.+....|.+.++++|.+........ ..++..+++.++..++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (592)
T PRK10790 5 SQLWPTLKRLLAYGSPWRKP-----LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLA 78 (592)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHH
Confidence 34456677777777777663 4455566666677777889999999998764332111 11111122222223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
.+..|+..++..+....+..+++.++|+++...|.++|++. .++..+|+++|++.+...+...+..++..++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~-~~ 157 (592)
T PRK10790 79 AGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-ML 157 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45667777777777777889999999999999999999765 67999999999999887776666555555443322 23
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001511 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1064)
Q Consensus 241 ~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1064)
.++++++|.+++++++.+|+..++..++.+...+...+.++..+++.....+..+++++||.|+.|+.+.+++.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44566799999887777776655555556666666666666667777777888889999999999998887777666554
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 321 TRHMRVVLHDH-WWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSIS 399 (1064)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~ 399 (1064)
.+...+..+.. .....+..++. ......+++ +.|....+..++|. +++++ .+...+..|+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~g~is~g~--l~a~~----~~~~~~~~pl~~l~~~ 304 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFS---ALILCGLLM----LFGFSASGTIEVGV--LYAFI----SYLGRLNEPLIELTTQ 304 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHCCCcCHHH--HHHHH----HHHHHHHHHHHHHHHH
Confidence 44332222111 11111111111 111111111 11122234445553 33333 2345566788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcC
Q 001511 400 SRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479 (1064)
Q Consensus 400 ~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~ 479 (1064)
...+++...+++|+.++++.+++... . . . .....+.|+++||+|.|++++++|+|+||++++||+++|+|+
T Consensus 305 ~~~~~~~~~s~~ri~~~l~~~~~~~~-~-~-~------~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~ 375 (592)
T PRK10790 305 QSMLQQAVVAGERVFELMDGPRQQYG-N-D-D------RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGH 375 (592)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCC-C-C-c------cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECC
Confidence 99999999999999999875433110 0 0 0 011235699999999998667899999999999999999999
Q ss_pred CCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH
Q 001511 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1064)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1064)
||||||||+++|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++. . .+++++.+
T Consensus 376 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~------~~d~~i~~ 448 (592)
T PRK10790 376 TGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D------ISEEQVWQ 448 (592)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C------CCHHHHHH
Confidence 99999999999999999999999999975 36789999999999999999999999874 1 46889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001511 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1064)
Q Consensus 554 ~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1064)
+++.+|++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tv 528 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999986654 35789999999999999999999999999999999999999999998876 37999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001511 629 ITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+||||++.++.+|+|++|+++
T Consensus 529 IivtHr~~~l~~~D~ii~l~~G 550 (592)
T PRK10790 529 VVIAHRLSTIVEADTILVLHRG 550 (592)
T ss_pred EEEecchHHHHhCCEEEEEECC
Confidence 9999999999999999999874
No 21
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-61 Score=583.23 Aligned_cols=511 Identities=19% Similarity=0.209 Sum_probs=380.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1064)
++..+++.++.+.+++..|++.++++|.+...+.. . ..+....++++++.++..+..|+..++..++...+..++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-L-AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777788889999999999987522111 1 111112222222333344556667777777777788999999
Q ss_pred HHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001511 187 YFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1064)
Q Consensus 187 ~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~ 265 (1064)
+|+++.+.|..+|++. .++..+|+++|++.+.+.+...+..++..++..++ ...++++++|.+++++++.+|+..++.
T Consensus 83 l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 83 LLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLA-ILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764 67999999999999887766555554444433322 223455679998888887777766666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1064)
Q Consensus 266 ~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1064)
..+.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+..+.......+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA--- 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 67777777777777778888888888888899999999999999887777766666544333222222222222211
Q ss_pred HHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001511 346 GATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1064)
Q Consensus 346 ~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~ 424 (1064)
.....++++ ++|. ...+..++|. +++++. +...++.|+..+......+++...+++|+.++++.+++..
T Consensus 239 ~~~~~~~~~----~~~~~~~~g~~t~g~--~~~~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 239 TLSVALVAV----YIGFRLLAGDLDLAT--GLFVLL----LAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 111111111 1111 1133446653 333332 2345567788888888999999999999999987432211
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE
Q 001511 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1064)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1064)
. . . + . . ....+.|+++||+|.|+++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 309 ~-~-~-~--~--~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 309 G-K-A-P--V--T-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred C-C-c-C--C--C-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 0 0 0 0 0 0 0112469999999999865 4799999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---C
Q 001511 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1064)
Q Consensus 504 i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~ 574 (1064)
+||.+ +++|++++||||+|++|++|++|||.++.+. .+++++.++++.++++++++++|.+.++ +
T Consensus 381 ~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e 454 (529)
T TIGR02857 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIGE 454 (529)
T ss_pred ECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhcc
Confidence 99975 4578899999999999999999999987532 4678999999999999999999976554 3
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEE
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+++++.||+|++|
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 6889999999999999999999999999999999999999999998876 489999999999999999999975
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2e-61 Score=589.57 Aligned_cols=528 Identities=17% Similarity=0.171 Sum_probs=389.2
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+.++++++++++++.. +...+++.++...+++..|.+.+.++|.+.... .+...++ +++++.++..+..
T Consensus 5 ~~~~~l~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~----~~~~~~~~~~~~~ 73 (588)
T PRK13657 5 RLYARVLQYLGAEKRL-----GILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLA----AWAGFGLFNIIAG 73 (588)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHH----HHHHHHHHHHHHH
Confidence 4567777777776653 555666666667788888999999999876432 1111111 1111122223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++...+..+....+..+++.++|+++.+.|..++++. .++..+|+++|++.+...+...+...+..++..+ ..+.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (588)
T PRK13657 74 VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALV-VLLPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5555555555555666677899999999999998764 6689999999999987666666665555544332 2334456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+++..++...+.++..+...+.++..+++.....+..+++++||.|+.++.+.+++.+..++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 78999998888777777777777778887777777777788888888888899999999999999888888777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+..........+.. ......+++ +++.. ..+..++|. +++++. ++..++.++..+......+
T Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~g~~~v~~g~lt~g~--~~a~~~----l~~~~~~~l~~l~~~~~~~ 299 (588)
T PRK13657 233 MPVLSWWALASVLNRAAS---TITMLAILV----LGAALVQKGQLRVGE--VVAFVG----FATLLIGRLDQVVAFINQV 299 (588)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCcCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 433322222222222211 111111111 11111 123446654 333332 2345567777888888888
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
.....+.+|+.++++.+++....... .......+.|+++||+|.|++++++|+|+||++++||+++|+||||||
T Consensus 300 ~~~~~~~~~i~~l~~~~~~~~~~~~~------~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsG 373 (588)
T PRK13657 300 FMAAPKLEEFFEVEDAVPDVRDPPGA------IDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAG 373 (588)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCCCC------CCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCC
Confidence 88999999999987754332110000 000112346999999999986567999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++.
T Consensus 374 KSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~------~~d~~i~~al~~ 447 (588)
T PRK13657 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD------ATDEEMRAAAER 447 (588)
T ss_pred HHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999975 3578999999999999999999999987432 468889999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~It 632 (1064)
++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||
T Consensus 448 ~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiit 527 (588)
T PRK13657 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA 527 (588)
T ss_pred hCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9999999999976554 46789999999999999999999999999999999999999999998876 379999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001511 633 HRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1064)
||++.++.+|+|++|+++
T Consensus 528 Hr~~~~~~~D~ii~l~~G 545 (588)
T PRK13657 528 HRLSTVRNADRILVFDNG 545 (588)
T ss_pred ecHHHHHhCCEEEEEECC
Confidence 999999999999999875
No 23
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-63 Score=559.12 Aligned_cols=578 Identities=34% Similarity=0.578 Sum_probs=479.6
Q ss_pred cccccccChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 001511 77 KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFL 156 (1064)
Q Consensus 77 ~~~~~~~~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~ 156 (1064)
..+.|+..++.+..|.+++.|...++..+++.+-.++++.+|+++..++.+.|.++..++.++...|...++.|+++.+.
T Consensus 90 e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiP 169 (728)
T KOG0064|consen 90 EPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIP 169 (728)
T ss_pred ccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 34444455677899999999999999998899999999999999999999999999999999888888878899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 157 LSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236 (1064)
Q Consensus 157 ~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~ 236 (1064)
++++++.++|+...++..+|.+++++....||++-.||.+++.|+++.|+|+++|+||..|++.+..++.++..++++.+
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 001511 237 LYTWRLCSYA-SPKYV--FWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHI 313 (1064)
Q Consensus 237 ~~~~~l~~~~-~~~L~--li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l 313 (1064)
++++.++-.. +.+.. ..+.+.+.+...+.+.++|++.++..++..+.|.+|+.|+++.+|.|.|++|++.+.|.+.+
T Consensus 250 l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql 329 (728)
T KOG0064|consen 250 LISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQV 329 (728)
T ss_pred HHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHH
Confidence 8777665321 11111 12233344566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC-c---cchhHHHHHHHHHHHHHHHHHH
Q 001511 314 QQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-T---STLGRAKMLSNLRYHTSVIISL 389 (1064)
Q Consensus 314 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~-~---~tlG~~~l~a~l~~~~~~l~~~ 389 (1064)
++.|+.+...+....+...|+.+...++.+|.++..+++++..|.+.+....+ . ...|.- ....+.-.-..+.+.
T Consensus 330 ~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~s-rt~~f~t~r~LL~sa 408 (728)
T KOG0064|consen 330 DESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNS-RTKEFITNRRLLLSA 408 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchh-HHHHHHHHHHHHHHH
Confidence 99999999998888888899999999999998887777766666554333221 1 111110 111111122345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC---CCCC-C----------CCCCC----CCCCCCCcEEEEeeE
Q 001511 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE---DKSP-Q----------RNGSR----NYFSEANYIEFSGVK 451 (1064)
Q Consensus 390 ~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~---~~~~-~----------~~~~~----~~~~~~~~i~~~nvs 451 (1064)
..++..+..++.+++++.++..|++++++.-.+.... .... + .++.. ........|.++||.
T Consensus 409 AdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIp 488 (728)
T KOG0064|consen 409 ADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIP 488 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCc
Confidence 7889999999999999999999999876543332210 0000 0 00000 000123459999999
Q ss_pred EEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHH
Q 001511 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 452 ~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
+..|.+..++..+||+|++|-.+.|+||||||||+|+|+|.|+||...|...++.. .+|.|+||.||...||+||
T Consensus 489 vItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-----~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 489 VITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-----NNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC-----cceEeccCCCccCcCcccc
Confidence 99998889999999999999999999999999999999999999999999988763 4699999999999999999
Q ss_pred HhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhcCC-CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 532 QLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 532 ni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~~p-~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
+|.||....+.. ....|.++..+|+.+.|++.+.+-. .+...+|-+.||||||||+++||.++|+|+..+|||+|||+
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 999997643222 2367889999999999999888754 23445788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCC
Q 001511 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRD 660 (1064)
Q Consensus 610 D~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~ 660 (1064)
.++.|..++++.+..|.+.|.||||+++.+++.+.+..|++|+|.+.+-++
T Consensus 644 sidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 644 SIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEFDGEGGWQFRALNT 694 (728)
T ss_pred ccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhccCCCCeeeccCCh
Confidence 999999999999999999999999999999999999999999999875554
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.5e-61 Score=586.76 Aligned_cols=527 Identities=19% Similarity=0.231 Sum_probs=399.7
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1064)
Q Consensus 89 ~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1064)
+.++++++++++ .++..+++.++...+....+.+.+.+++......... .+....++++++.++..+..|+.
T Consensus 3 ~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 74 (571)
T TIGR02203 3 RRLWSYVRPYKA-----GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIGLAVLRGICSFVS 74 (571)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776655 3555555666667777788888888888766533211 11111222222333445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1064)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~ 247 (1064)
.++..+....+...++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+...+..++..++ ..+++++++
T Consensus 75 ~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~ 153 (571)
T TIGR02203 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIG-LFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 7777777777888999999999999999998764 56899999999999887776666555555443333 334556789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 248 ~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
|.+++++++..|+..++..++.++.++...+.++..+++.....+..+++++||.+++++.+..++++.+++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888888888899999999999999999999888887777766654443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~ 406 (1064)
.+.......+..++. .....++++ +++.. ..+..|.|. ++++. .++..++.|+..+......++++
T Consensus 234 ~~~~~~~~~~~~~~~---~~~~~~~~~----~g~~~~~~g~lt~g~--l~a~~----~~~~~~~~pl~~l~~~~~~~~~~ 300 (571)
T TIGR02203 234 TSAGSISSPITQLIA---SLALAVVLF----IALFQAQAGSLTAGD--FTAFI----TAMIALIRPLKSLTNVNAPMQRG 300 (571)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222221 111112222 11111 223446654 33333 23455668888889999999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
..+.+|+.++++.+++.+... . ......+.|+++||+|+|++ ++++|+|+||++++||+++|+|+||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~--~------~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKS 372 (571)
T TIGR02203 301 LAAAESLFTLLDSPPEKDTGT--R------AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS 372 (571)
T ss_pred HHHHHHHHHHHcCCCCCCCCC--C------CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHH
Confidence 999999999987654422110 0 00112346999999999975 46799999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~ 559 (1064)
||+++|+|+++|++|+|.+||.+ .++|++++||||+|++|++|++|||.++... +.+++++.++++.+|
T Consensus 373 TLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~~l~~~~ 447 (571)
T TIGR02203 373 TLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE-----QADRAEIERALAAAY 447 (571)
T ss_pred HHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----CCCHHHHHHHHHHcC
Confidence 99999999999999999999975 3578899999999999999999999987531 257889999999999
Q ss_pred ChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccC
Q 001511 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHR 634 (1064)
Q Consensus 560 L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~ 634 (1064)
++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 448 l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 448 AQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred hHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 99999999976554 468899999999999999999999999999999999999999999988764 8999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001511 635 PALVAFHDVVLSLDGE 650 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1064)
++.+..||+|++++++
T Consensus 528 ~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 528 LSTIEKADRIVVMDDG 543 (571)
T ss_pred hHHHHhCCEEEEEeCC
Confidence 9999999999999864
No 25
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5e-61 Score=584.85 Aligned_cols=527 Identities=16% Similarity=0.148 Sum_probs=398.0
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+++++++++++++. ++..+++.++.+.+.+..|++.++++|.+...+. ... .+++.++..++..+..|
T Consensus 6 ~~~~l~~~l~~~k~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~----~~~~~~~~~~~~~~~~~ 74 (585)
T TIGR01192 6 VYVRALSYLNVHKNR-----VLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VLP----TLALWAGFGVFNTIAYV 74 (585)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHH----HHHHHHHHHHHHHHHHH
Confidence 467788888888773 5556666677778888999999999998764331 111 11111122334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..++...+..+++.++|+++.++|+++|+++ .++..+|+++|++.+...+...+...+..++..++ ...++++
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 153 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFL-LIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777777888888999999999999999764 67999999999999887777666666555543333 2334567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.+++++++.+|+..++..++.++.++...+.++..+++.....+..+++++||+|+.|+.+.+++++..++..+...
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888877778888888877777777777777888888888999999999999998877777776655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+. .+....+...+......++++ +++.+ ..+..++|. +++++.+ ...++.++..+......+.
T Consensus 234 ~~~~~---~~~~~~~~~~~~~~~~~~v~~----~g~~~v~~g~it~g~--l~a~~~~----~~~l~~~~~~l~~~~~~~~ 300 (585)
T TIGR01192 234 PVLDW---WALASGLNRMASTISMMCILV----IGTVLVIKGELSVGE--VIAFIGF----ANLLIGRLDQMSGFITQIF 300 (585)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33222 222222111111111122222 22222 233446653 3343322 3445577778888888899
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
.+..+.+|+.++++.+++........ ......+.++++||+|.|++++++++|+||++++||+++|+|||||||
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 374 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPADAP------ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCccCC------CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999887654322111000 001123469999999999866679999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+++|+|+++|++|+|.+||.+ .++|+.++||||+|++|++|++|||.++.+. .+++++.++++.+
T Consensus 375 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~a~~~~ 448 (585)
T TIGR01192 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG------ATDEEVYEAAKAA 448 (585)
T ss_pred HHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999965 3568899999999999999999999987432 4678899999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1064)
++++++.++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+|||
T Consensus 449 ~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH 528 (585)
T TIGR01192 449 AAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH 528 (585)
T ss_pred CcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 999999998875543 46889999999999999999999999999999999999999999998875 3899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|++.+..+|+|++|+++
T Consensus 529 ~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 529 RLSTVRNADLVLFLDQG 545 (585)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999875
No 26
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-61 Score=551.55 Aligned_cols=528 Identities=20% Similarity=0.239 Sum_probs=390.2
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP-LFFQLISENILLCFLLSTMHSTSKYITG 169 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~yl~~ 169 (1064)
+.+++++|++ .+ +.+.+.+++.++....+..+-.++|||+.+....+.. .|.-++. .+.+=...+...+.+|...
T Consensus 4 l~p~i~l~~~-~~-~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p--~a~VR~~aI~Rt~~RY~ER 79 (573)
T COG4987 4 LLPYLRLYKR-HK-FGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLP--SAGVRGLAILRTAARYVER 79 (573)
T ss_pred chHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3478888887 22 2466666677776677788999999999987766542 1111111 1111112233567889888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1064)
Q Consensus 170 ~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~ 248 (1064)
..+.++--++..++|.++|+++.-.+.....+ +.+++.+|+++||+.+.+.+..++.+.+.+++...+.. +...+++|
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~-i~L~f~~~ 158 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVT-IGLSFFSI 158 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHH-HHHHHhhH
Confidence 88888877899999999999998877665544 67899999999999999999888888776665443322 23345789
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 249 KYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 249 ~L~li~l~~~~l~~~i~~~~~~~~-~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
.+++.+.+++.+..+++++++.+. ++...+..+..+.+++.......+.....+||+++...+.+.+.-+.+.+..++.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~ 238 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQ 238 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776666666666655444 4455666677777777665555566667899999998876666655555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVA-VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRLNR 405 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~-~~~~~l~~ 405 (1064)
.+...+.+.+..++ .+..+. .++ |+++....|..+.- +..+.. ..+...++++..+. .....+.+
T Consensus 239 ~~~~~~~~a~~~l~---~g~~v~~~l~----w~a~~~~~G~~~~~-~aa~~l-----l~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 239 ARFTGLSDAILLLI---AGLLVIGLLL----WMAAQVGAGALAQP-GAALAL-----LVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH----HHHhcCcCCCcchh-HHHHHH-----HHHHHHHHHHhhhcchhHHHhhH
Confidence 33333333322221 122221 222 23333333332211 111111 12234445555555 66788999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCC-eeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~-~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
...++.|+.++.+.+++...++... ......++++||+|+|++.+ ++|+|+||++++||++||+|+|||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~~~~~--------~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFPDEQT--------ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HHHHHHHHhhhccCCcccCCCcccc--------CCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 9999999999988777655431111 11122799999999998765 79999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+++|.|-|+|++|+|.++|.+ +++|+.|++++|++++|.+|++||+..+.++ .+||+++++++++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~------AsDEel~~aL~qv 451 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD------ASDEELWAALQQV 451 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHc
Confidence 999999999999999999999975 3478899999999999999999999987654 6899999999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1064)
||++++...|.+..+ +.|..||||||||++|||+|++|.+++||||||.|||+.||+++++.+.+ .|+|+|+|||
T Consensus 452 gL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTH 531 (573)
T COG4987 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH 531 (573)
T ss_pred CHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEec
Confidence 999999999875544 46889999999999999999999999999999999999999999998876 4999999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+..++.+|+|++|+++
T Consensus 532 rL~~le~~drIivl~~G 548 (573)
T COG4987 532 RLRGLERMDRIIVLDNG 548 (573)
T ss_pred ccccHhhcCEEEEEECC
Confidence 99999999999999975
No 27
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.3e-61 Score=596.80 Aligned_cols=527 Identities=16% Similarity=0.189 Sum_probs=398.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.+.+++++++++++. +...++++++.+.++...|.+.+.++|.++... ...++. ..+.++++.++..+..
T Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~~~~ 196 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ-----FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEPALG 196 (694)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 356677777777663 444555556666777788999999999876432 222211 1122222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..+...++..+++.++|+++.+.|+++|+++ .++..+|+ +|++.+.+.+...+...+..++..+++ ..+++
T Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 274 (694)
T TIGR01846 197 GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVF-LAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6676666667777889999999999999999999765 67999999 699988776655444444333333333 24566
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++..++.+++++...+..+..+++.....+...++++||.++.|+.+.+++.+.+++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 78999999988888877777777888888887777777778888888888899999999999999988888887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++. ....+++++ +++.+ ..+..|+|. ++++. .+...++.|+..+......+
T Consensus 355 ~~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~it~G~--lia~~----~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQ---KLTFAILLW----FGAHLVIGGALSPGQ--LVAFN----MLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhHH----HHHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 443332222222222221 111222222 22222 134456664 33432 23456678888899999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGS 482 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGs 482 (1064)
+++..+.+|+.++++.+++..... . .......+.|+++||+|.|+++ +++|+|+||+|++||+++|+|+|||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~~~-~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGs 494 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRSAG-L------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccCCC-C------CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCC
Confidence 999999999999997665432110 0 0001123579999999999754 5799999999999999999999999
Q ss_pred chhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHH
Q 001511 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1064)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1064)
|||||+|+|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++
T Consensus 495 GKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~------~~~~~i~~a~~ 568 (694)
T TIGR01846 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG------APFEHVIHAAK 568 (694)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC------CCHHHHHHHHH
Confidence 99999999999999999999999975 3678999999999999999999999986432 46889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEE
Q 001511 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631 (1064)
Q Consensus 557 ~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~I 631 (1064)
.++++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+|
T Consensus 569 ~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 648 (694)
T TIGR01846 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648 (694)
T ss_pred HcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999986554 367899999999999999999999999999999999999999999988763 8999999
Q ss_pred ccChhHHHhcCEEEEEeCC
Q 001511 632 SHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 632 tH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+++++.+|+|++|+++
T Consensus 649 tH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 649 AHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred eCChHHHHhCCEEEEEeCC
Confidence 9999999999999999874
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.6e-61 Score=628.30 Aligned_cols=529 Identities=17% Similarity=0.188 Sum_probs=370.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hh-HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VP-LFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~-~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
.+.++++.++||++. +++.++++++...+...++.+.+.+++.++... .. ......+.++++.++..++.++.
T Consensus 812 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-----VTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888774 444444555666777788889998888765421 11 01111111111111222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC---CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~---~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~ 241 (1064)
.|+...++.+ +..++|.++|++++++|++||++ .++++.+|+++|++.+...+...+..++..++.. +++.+
T Consensus 887 ~~~~~~~~~~----~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~-i~~~~ 961 (1466)
T PTZ00265 887 NYYNNVIGEK----VEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLF-LVSMV 961 (1466)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455555544 78889999999999999999974 3678999999999998877666555555444432 33344
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM-SK-----------------EQQLEGEYRQLHSRLRTHAESIAFY 303 (1064)
Q Consensus 242 l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~-~~-----------------~q~~~~~~r~~~~~l~~~~e~Ik~~ 303 (1064)
++++++|.+++++++.++ ++...+.++.+... .+ .++..++......+...++++|++|
T Consensus 962 ~~~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~ 1038 (1466)
T PTZ00265 962 MSFYFCPIVAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIY 1038 (1466)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHh
Confidence 566778988776654333 22333333322211 11 1222445566778888899999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHH
Q 001511 304 GGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYH 382 (1064)
Q Consensus 304 ~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~ 382 (1064)
+.|+.+.+++.+..++..+...+ ...+.++..++...+...+.+++++ +++.+. .+..++|. +++++.++
T Consensus 1039 ~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~G~~lv~~g~it~g~--l~~~~~~~ 1109 (1466)
T PTZ00265 1039 GLEDYFCNLIEKAIDYSNKGQKR---KTLVNSMLWGFSQSAQLFINSFAYW----FGSFLIRRGTILVDD--FMKSLFTF 1109 (1466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHHH
Confidence 99999987776666555443322 2233333333332222222233333 333332 34445553 33433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCee
Q 001511 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVL 460 (1064)
Q Consensus 383 ~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~ 460 (1064)
.....++..+......++++..+++|++++++.+++.+..+..... . .......+.|+|+||+|.||+ +.++
T Consensus 1110 ----~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~-~-~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1110 ----LFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIR-I-KNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccc-c-ccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 1122345566777888999999999999999876543211100000 0 000112357999999999985 3589
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-------------------------------------------
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL------------------------------------------- 497 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p------------------------------------------- 497 (1064)
|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998
Q ss_pred -----------CccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 498 -----------VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 498 -----------~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~------at~eeI~~A~k~A~l 1337 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED------ATREDVKRACKFAAI 1337 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC------CCHHHHHHHHHHcCC
Confidence 69999999976 4689999999999999999999999998542 578999999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEcc
Q 001511 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 633 (1064)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~----g~TvI~ItH 633 (1064)
++|+.++|.++++ +.|.+|||||||||||||||+++|+|||||||||+||+++|+.+++.+.+. ++|+|+|||
T Consensus 1338 ~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1338 DEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred HHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 9999999987665 367899999999999999999999999999999999999999999988753 899999999
Q ss_pred ChhHHHhcCEEEEEeC
Q 001511 634 RPALVAFHDVVLSLDG 649 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~ 649 (1064)
|+++++.||+|++|++
T Consensus 1418 Rlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1418 RIASIKRSDKIVVFNN 1433 (1466)
T ss_pred hHHHHHhCCEEEEEeC
Confidence 9999999999999997
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.9e-60 Score=576.06 Aligned_cols=530 Identities=20% Similarity=0.240 Sum_probs=391.1
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.++.++++++++++. +...+++.++...++...|.+.+.++|.+.... ...+...+. +.+++.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (576)
T TIGR02204 5 PLAALWPFVRPYRGR-----VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFA----FLLVVALVLALGT 75 (576)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHH----HHHHHHHHHHHHH
Confidence 355666777766552 445555666667788888999999998755332 222221111 1112222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..+....+..++|..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+. ...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (576)
T TIGR02204 76 AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIG-GLIMMF 154 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555555566666888999999999999999988764 67899999999999877666555554444433322 223456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++..++.++.++..++.++..+++.....+..+++++||.++.|+.+.+++++..++..+..
T Consensus 155 ~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 234 (576)
T TIGR02204 155 ITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAA 234 (576)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 67899988888777777777777888888888888888888888899999999999999999999988888887766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+...+...+..++ .....+++++ +++.. ..+..++|. +++++. +...++.++..+.....++
T Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~g~~~v~~g~lt~g~--~~~~~~----~~~~~~~pl~~~~~~~~~~ 301 (576)
T TIGR02204 235 RQRIRTRALLTAIVIVL---VFGAIVGVLW----VGAHDVIAGKMSAGT--LGQFVF----YAVMVAGSIGTLSEVWGEL 301 (576)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 43332222222221111 1111111111 22221 123446664 333322 2344567888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNG 481 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sG 481 (1064)
.++..+.+|+.++++.+++.+..... ...+ .+..+.|+++||+|.|+++ +++|+|+||++++||.++|+||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~~~----~~~~-~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sG 376 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPAHP----KTLP-VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSG 376 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCC----ccCC-cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCC
Confidence 99999999999998765432211000 0000 1123469999999999753 579999999999999999999999
Q ss_pred CchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHH
Q 001511 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1064)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1064)
||||||+|+|+|+++|++|+|.+||.+ .+++++|+|+||+|++|++|++|||.++.+. .+++++.+++
T Consensus 377 sGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l 450 (576)
T TIGR02204 377 AGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAA 450 (576)
T ss_pred CCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHH
Confidence 999999999999999999999999965 3567899999999999999999999987542 3678999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001511 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1064)
Q Consensus 556 ~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1064)
+.+++.++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Ii 530 (576)
T TIGR02204 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530 (576)
T ss_pred HHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999876543 46889999999999999999999999999999999999999999988876 4899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||++.+..+|+|++++++
T Consensus 531 itH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 531 IAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred EecchHHHHhCCEEEEEECC
Confidence 99999999999999999875
No 30
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-59 Score=542.07 Aligned_cols=511 Identities=17% Similarity=0.214 Sum_probs=388.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001511 113 IVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMA 192 (1064)
Q Consensus 113 l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~ 192 (1064)
+.++...+....+++....++.++.... +.. +...++.+++..++-.+..+...+++.+--..+...+|+..+++..
T Consensus 8 l~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 8 LAVLSGIAIIAQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555666666666665542 111 1112222222334455667788888888888888999999999999
Q ss_pred ccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 001511 193 YYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPA 271 (1064)
Q Consensus 193 ~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~ 271 (1064)
..+..+.++. .++..+.+++-|+.+...+..++...+.+.+.-++ .++..++.||.-++++++.+|++-+.+..++..
T Consensus 85 ~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 85 KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-ILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887664 57889999999999988888887777666543322 234456789999999998888887777778887
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 272 FGKLMSKEQQLEGEYRQ-LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVA 350 (1064)
Q Consensus 272 ~~k~~~~~q~~~~~~r~-~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1064)
-++..+++-....++.. ++++++ +.+++|+|++.+...+++.+...+..+...+..+..+....+..++. +++.+++
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsiAlv 241 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSIALV 241 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 77777666666666554 455555 88999999999999888888777777766666666666666655543 2333332
Q ss_pred HHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCC
Q 001511 351 VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP 430 (1064)
Q Consensus 351 ~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~ 430 (1064)
.+.+...+.+. |+.++..+.+ ++..-..+|.|+.+++..+|.-....+++|.++.+++.+.+........
T Consensus 242 Av~~g~~ll~~----G~ltl~~~l~------~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~ 311 (559)
T COG4988 242 AVYIGFRLLGE----GDLTLFAGLF------VLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA 311 (559)
T ss_pred HHHHHHHHHcc----CCccHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc
Confidence 22221112220 3445543221 1223468899999999999999999999999999988665432211100
Q ss_pred CCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--
Q 001511 431 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 508 (1064)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-- 508 (1064)
. .. ......++.+|+++.|++++++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||++
T Consensus 312 ~--~~---~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~ 386 (559)
T COG4988 312 E--VA---NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386 (559)
T ss_pred c--cc---cCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccc
Confidence 0 00 0012345666999999988899999999999999999999999999999999999999999999999976
Q ss_pred ----ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcCh
Q 001511 509 ----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 581 (1064)
Q Consensus 509 ----~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSG 581 (1064)
.++|+++++|+|+|++|.+|++|||.++.+. .+++++.++++++++.++++. |.+.++ +.|..|||
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSg 459 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSG 459 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCH
Confidence 4689999999999999999999999998654 578999999999999999999 876553 46889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||+|||++||||+++++++|+||||++||.++|+.+.+.+.+ +++|+|+||||+..++.+|+|++||++.
T Consensus 460 GQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 460 GQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred HHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence 999999999999999999999999999999999999998876 4899999999999999999999999763
No 31
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-59 Score=569.33 Aligned_cols=504 Identities=16% Similarity=0.168 Sum_probs=372.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001511 118 TALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKIS 197 (1064)
Q Consensus 118 t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~ 197 (1064)
..+.+..|.+.+.++|.+...... ... +..+++++++..++..+..|+..++..+...++..++|.++|+++...|.+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 445556788888888876543211 111 111122222222333445566666666666678889999999999999999
Q ss_pred cccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001511 198 HVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276 (1064)
Q Consensus 198 ~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~ 276 (1064)
+|++ ..++..+|+++|++.+...+...+..++..++..+++.+.++++++|.+++++++.+|+..++...+.++..+..
T Consensus 86 ~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 86 FYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred HHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976 467999999999999875555544444444333322223333468999999888888887777777888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 277 SKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356 (1064)
Q Consensus 277 ~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 356 (1064)
.+.++..+++.....+...++++||.|+.|+.+.+++.+..++..+...+.. +..+....+..........++++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-- 240 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVA---RIDARFDPTIYIAIGMANLLAIG-- 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7777777888888888888999999999999998777777666555443322 22222222222111111122222
Q ss_pred hhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCC
Q 001511 357 PFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS 435 (1064)
Q Consensus 357 ~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~ 435 (1064)
+++.+. .+..|+|. +++++.+ ...++.|+..+......++++..+.+|+.++++.+++......
T Consensus 241 --~g~~lv~~g~lt~g~--l~a~~~~----~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~------- 305 (569)
T PRK10789 241 --GGSWMVVNGSLTLGQ--LTSFVMY----LGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE------- 305 (569)
T ss_pred --HHHHHHHcCCcCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-------
Confidence 222221 23446653 3443333 3445577778888888999999999999999876543221100
Q ss_pred CCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------
Q 001511 436 RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1064)
Q Consensus 436 ~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1064)
......+.|+++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 306 -~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 306 -PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred -CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH
Confidence 001123469999999999754 579999999999999999999999999999999999999999999999975
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQ 585 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQ 585 (1064)
.++|++++||||+|++|++|++|||.++.+. .+++++.++++.+++++++.++|++.++ +.|.+|||||||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPD------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHHHhheEEEccCCeeccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 3568899999999999999999999987432 4678899999999999999999986554 367899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+|+||||++.++.+|+|++|+++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G 525 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999998876 489999999999999999999999864
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-59 Score=531.70 Aligned_cols=536 Identities=19% Similarity=0.215 Sum_probs=359.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
+..++.+..+.+|.-.+.....++..+++++.+-++.+..|.+.+..++.+- .++.|..+......++..+++.+..++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 5667777777777544333334556666666667777788888888887764 233342221111111112222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
++.+...+....-+...++...+.|++...++.++|.++ +|++...+..-...+...+..++..++..++...+....+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555777788888999999999998665 5566666665555555555555555544443322221122
Q ss_pred HHHhhhhHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAG---TMMRNFSPAFGKLMSKEQQLEGE-YRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~---~i~~~~~~~~~k~~~~~q~~~~~-~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~ 318 (1064)
..-..+.++++++..+...+ +.+....-++++.. .+.+.+ -+...+. ..|-|+||.||.|++|.+++.....
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~---N~Adn~as~~~~ds-L~Nye~VKsfNnE~~Ea~~y~~~l~ 245 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAM---NNADNSASRRAYDS-LINYEIVKSFNNEEYEASRYDGSLK 245 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHH---HhhhhHHHHHHHHH-HhhHHHHHHcccHHHHHHHHHHHHH
Confidence 22235555555543322211 11111222333322 222222 2333444 4488999999999999876666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 319 ALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
+..+...+........++.|..+..+... ...++. ..| +..+.+|.|...++. +.+.++-.++..++.
T Consensus 246 ~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~-~im~l~----~~g-i~~~~mtvgdlv~~n------~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 246 TYERAGLKYSSSLAFLNFGQKAIFSVALT-FIMVLG----SNG-IAAGKMTVGDLVMVN------SLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHhhhhHHhHHHHHHHHHHHHHHHHHH-HHHHHH----hhh-hhhccccccchhhHH------HHHHHHHhHHHHHHH
Confidence 55544333333333344444443322111 111111 112 334456777644333 234455567777887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEc
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
.+.++.+...-..-++...+...+.. ..+ .+.....+.|+|+||+|+|++++++|+++||+|++||.+||||
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~------~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG 385 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDEDIQ--EAA------LPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVG 385 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhh--hcc------CCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEEC
Confidence 77777766544433333222211111 100 0112234579999999999888889999999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+|||||||++|+|.++++ ++|+|++||++ +++|+.|||||||..+|++||.+||.||... .+++++.
T Consensus 386 ~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s------as~eeV~ 458 (591)
T KOG0057|consen 386 SNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS------ASDEEVV 458 (591)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC------cCHHHHH
Confidence 999999999999999999 99999999987 4689999999999999999999999999765 6899999
Q ss_pred HHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~T 627 (1064)
++++++|++|.+.++|+++.+ ++|..|||||||||+||||+++||+|+++|||||+||.++|..+.+.+.+ .++|
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rT 538 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRT 538 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCe
Confidence 999999999999999998766 47889999999999999999999999999999999999999999998876 4999
Q ss_pred EEEEccChhHHHhcCEEEEEeCCC
Q 001511 628 CITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+|+|.||+.+++.+|+|++++++.
T Consensus 539 vI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 539 VIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred EEEEEecchhHhcCCEEEEEECCe
Confidence 999999999999999999999863
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.7e-58 Score=555.85 Aligned_cols=506 Identities=17% Similarity=0.204 Sum_probs=369.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~ 185 (1064)
++..+++.++...+.+..|++.+.++|.+...+ ...+.. .+++.+++.++..+..++..++..+....+..++|.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLM----LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666777888999999998776332 222211 122222222333444555566666666668888899
Q ss_pred HHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001511 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE-LVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1064)
Q Consensus 186 ~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~-l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i 264 (1064)
++|+++.+.|... .++...++++|++.+.+.+.. .+..++..++.. ++. .++++++|.+++++++..|+..++
T Consensus 84 ~~~~~ll~~~~~~----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 84 PIFAASFSATLRR----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYL-LVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHhcCcccC----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999743 245578999999998776554 333333333322 222 345678999998887766666555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1064)
Q Consensus 265 ~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1064)
...+.+..++...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+..+..........++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-- 235 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 555666666666777777777788888888999999999999999888888777766554433222221111111111
Q ss_pred HHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhc
Q 001511 345 LGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1064)
Q Consensus 345 ~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~ 423 (1064)
.....++++ +++.+. .+..++|. +++++. +...++.|+..+......++++..+.+|+.++++.+++.
T Consensus 236 -~~~~~~~~~----~g~~l~~~g~it~g~--l~a~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 304 (544)
T TIGR01842 236 -IVLQSLVLG----LGAYLAIDGEITPGM--MIAGSI----LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSR 304 (544)
T ss_pred -HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 111111222 222221 33456653 344332 334566788888889999999999999999998765432
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEE
Q 001511 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1064)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1064)
.. ... .....+.++++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 305 ~~-~~~--------~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 305 DP-AMP--------LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred cC-CCC--------CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 11 000 01123469999999999754 689999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001511 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1064)
Q Consensus 503 ~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~--- 573 (1064)
.+||.+ .++|+.++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|++.++
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999965 346789999999999999999999986532 24678899999999999999999975444
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .|+|+|+||||++.+..+|+|++|+++
T Consensus 450 ~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G 529 (544)
T TIGR01842 450 PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529 (544)
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 36889999999999999999999999999999999999999999998865 379999999999999999999999874
No 34
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-57 Score=552.23 Aligned_cols=521 Identities=12% Similarity=0.079 Sum_probs=362.0
Q ss_pred HHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILL-SEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 88 l~rL~~~~~-p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.++++++++ |+++. ++..+++.++.+.+...++.+.+.+++.....+ . ..+...+++. ++..+..|
T Consensus 5 ~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~---~~~~~~~~~~----~~~~~~~~ 71 (555)
T TIGR01194 5 IGEILALLRSPFPAI-----TAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q---GSLFSFGGLC----LLALLFRI 71 (555)
T ss_pred HHHHHHHHhhccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c---hHHHHHHHHH----HHHHHHHH
Confidence 467777888 88763 444555555556666667776666654321010 0 0111111111 12223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..+...++..++|.++|+|+.+.|+++|++ +.++..+|+++|++.+.+.+.. +...+..++.. +.+.+++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~-~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF-FFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHH
Confidence 44445555555588889999999999999999976 4779999999999998876654 33444333322 233455677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRH 323 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~--~e~~~l~~~f~~l~~~ 323 (1064)
++|.+++++++.+|+..++..++.++..+...+.++..+++.....+...+++++|.|+.++ .+. +++++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~----~~~~~~~~~ 225 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH----GAIQESANN 225 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH----HHhhHHHHH
Confidence 89999999887777766666666667777777777777888888888888999999999854 333 334333333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 324 MRVV-LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
.++. .+.........++...+.....+++++ +++.. +..++| .+++++. +...++.|+..+......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~t~g--~l~a~~~----~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 226 IADLHIIEILIFIAAENFGQLLFFLLIGCALF----AAAMF--ASIDAA--AISAFVL----ALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--cCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2222 111122222222211111111111222 22211 234555 3444433 334556888889999999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCC--CCCCCCCCcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEE
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGS--RNYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLI 476 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaI 476 (1064)
++++..+++|+.++++.+.+............. .......+.|+++||+|.|++. +++|+|+||++++||+++|
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ai 373 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEE
Confidence 999999999999997642211000000000000 0000123569999999999753 3699999999999999999
Q ss_pred EcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
+||||||||||+++|+|+++|++|+|.+||.+ .++|+.+++|+|+|++|++|+++|+. +..++++
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~---------~~~~~~~ 444 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG---------EHASLDN 444 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc---------cchhHHH
Confidence 99999999999999999999999999999965 35678999999999999999999941 1246778
Q ss_pred HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H---hcCc
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R---AMGT 626 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l-~---~~g~ 626 (1064)
+.++++.++++++++++|.++++. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+ + ..|+
T Consensus 445 ~~~~~~~~~l~~~~~~lp~g~~t~--~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 522 (555)
T TIGR01194 445 AQQYLQRLEIADKVKIEDGGFSTT--TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522 (555)
T ss_pred HHHHHHHcCCchhhcccccccCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999866553 689999999999999999999999999999999999999987744 2 3589
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+|+||||++++..||+|++|+++
T Consensus 523 tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 523 TIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred EEEEEeccHHHHHhCCEEEEEECC
Confidence 999999999999999999999875
No 35
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.5e-57 Score=598.02 Aligned_cols=449 Identities=16% Similarity=0.184 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001511 177 KIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL 255 (1064)
Q Consensus 177 ~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l 255 (1064)
....+++|.+.|+++++.|++||+.. .|+..+|+++|++.+...+...+..++..++..+ ...+++++.+|.++++++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i-~~li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVI-GALIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33777889999999999999999875 6799999999999988777766666555544332 223334555665555444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 256 AYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335 (1064)
Q Consensus 256 ~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~ 335 (1064)
+.+++..++.+++.+..++..+..++..+.+.....+...++++||+|+.++.+.++..+..+...+..........|.+
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43343333444444444444444444555566667777889999999999988765555544444333222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 336 MIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE 415 (1064)
Q Consensus 336 ~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~e 415 (1064)
....++. ..+.+++.....+. .+..+.|. +...+.| ...+..++..+...+..++....+.+|+.+
T Consensus 1193 ~~~~~~~----~~~~~~~~~~~v~~----~~~~~~g~--l~~~l~~----~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~ 1258 (1522)
T TIGR00957 1193 VRLECVG----NCIVLFAALFAVIS----RHSLSAGL--VGLSVSY----SLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258 (1522)
T ss_pred HHHHHHH----HHHHHHHHHHHHHh----cCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222211 11111111000011 12234443 2233322 344556777788888899999999999999
Q ss_pred HHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc
Q 001511 416 LMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1064)
Q Consensus 416 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1064)
+++.++|........ ......+..+.|+|+||+++|+++ +++|+|+||+|++||++||||+||||||||+++|.|+
T Consensus 1259 ~~~~~~e~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1259 YSETEKEAPWQIQET---APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HhcCCCCccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 997665432100000 000112235689999999999754 5799999999999999999999999999999999999
Q ss_pred CCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 495 WPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 495 ~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
++|++|+|.+||+| .++|++|++|||||++|+|||||||.... +.+++++.++++.++++++++++|
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999986 46899999999999999999999997321 257899999999999999999999
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCE
Q 001511 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~ 643 (1064)
.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.+++.+++ .++|+|+||||++++..+|+
T Consensus 1409 ~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred cCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 76554 36789999999999999999999999999999999999999999999976 48999999999999999999
Q ss_pred EEEEeCC
Q 001511 644 VLSLDGE 650 (1064)
Q Consensus 644 Il~l~~~ 650 (1064)
|++|++|
T Consensus 1489 IlVld~G 1495 (1522)
T TIGR00957 1489 VIVLDKG 1495 (1522)
T ss_pred EEEEECC
Confidence 9999964
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.1e-57 Score=593.70 Aligned_cols=460 Identities=18% Similarity=0.214 Sum_probs=312.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+...+......+..+++|.++|+++++.|++||+++ .|+..+|+++|++.+...+...+..++..++..+. +.+++.+
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~-~~i~i~~ 1050 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLS-TFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333333344778889999999999999999875 67999999999999887776666665555544322 2223333
Q ss_pred hhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~-~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
++| +.+++++.+++..+.. .++.+..++..+......+.......+..+++++||+|+.+++..+...+..+...+..
T Consensus 1051 ~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1051 VST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 454 3333322222222222 22223333333333333344445567777899999999997765433333332222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD---TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~---~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
........|.+....++..++....+.+.+ +.++..... .+++| .+++ +...+...+..+.....
T Consensus 1130 ~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v---~~~~~~~~~~~~~~~~G--~~ls-------~~~~~~~~l~~l~~~~~ 1197 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLGGLMIWLTASFAV---MQNGRAENQAAFASTMG--LLLS-------YALNITSLLTAVLRLAS 1197 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccccccchhhhHHHH--HHHH-------HHHHHHHHHHHHHHHHH
Confidence 111111222222222111100000000000 011111000 11222 2222 12233344445555566
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
.++....+.+|+.++++.++|.+...... .+....+..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+|
T Consensus 1198 ~~e~~~~sveRi~e~~~~~~E~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrS 1274 (1622)
T PLN03130 1198 LAENSLNAVERVGTYIDLPSEAPLVIENN---RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRT 1274 (1622)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCC
Confidence 77888999999999988766532110000 000112235689999999999654 57999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|.|+++|++|+|.+||+| .++|++|++|||||.+|+|||+|||.++. +.+++++.++
T Consensus 1275 GSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-------~~tdeei~~A 1347 (1622)
T PLN03130 1275 GAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWES 1347 (1622)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-------CCCHHHHHHH
Confidence 9999999999999999999999999976 46899999999999999999999998753 2478999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++ .++|+|
T Consensus 1348 l~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI 1427 (1622)
T PLN03130 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1427 (1622)
T ss_pred HHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 9999999999999976554 35789999999999999999999999999999999999999999999986 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||++++..||+|+||++|
T Consensus 1428 ~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1428 IIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred EEeCChHHHHhCCEEEEEECC
Confidence 999999999999999999975
No 37
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-59 Score=520.36 Aligned_cols=534 Identities=18% Similarity=0.250 Sum_probs=363.6
Q ss_pred HHHHHHHHHHhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH--HH
Q 001511 86 KSLQVLAAILLSEMGK-MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM--HS 162 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~-~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~--~~ 162 (1064)
+.++...++++|.+.. .....+..++ +..+.-++.+.+|.+.+++.+.+.... ..-+..+...+++.++-... +.
T Consensus 196 rk~~~~~~ylwp~~~~alql~v~~cl~-ll~i~rli~~~~pi~~k~iv~~ltap~-~~~~~~~~~~v~L~flqg~gtgsG 273 (790)
T KOG0056|consen 196 RKLRTVAPYLWPTKSIALQLRVVFCLF-LLIIGRLINVSLPILSKWIVDELTAPD-TFQYSLVFLYVFLKFLQGGGTGSG 273 (790)
T ss_pred ceeEEeccccccCCCcchhHHHHHHHH-HHHHHHHHhhhhHHhHHHHHHhhcCcc-hhhHHHHHHHHHHHHHhcCCcccc
Confidence 3444555666664332 2222233333 334444788889999999998876221 11122222233322221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCCh---hHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHP---EQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~---~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~ 238 (1064)
+.+-+...+.++..+.-++.+-...|+|+..+.+.++-+ +.|+. +.|=++-+. +.+.+..-+.+.+.-+..+++|
T Consensus 274 ~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vY 352 (790)
T KOG0056|consen 274 FLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVY 352 (790)
T ss_pred chhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhh
Confidence 344455556667777788888889999999999988744 45543 334444444 3333322223333222222222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 001511 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1064)
Q Consensus 239 ~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~ 318 (1064)
+....||...+++++...+...++..+...-.+..++......+.|.......-|.|++|-|++|+.|.++..+...
T Consensus 353 ---F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 353 ---FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred ---hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 11224666777666554444333333322222333333333333344344444588999999999999865555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 319 ALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1064)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~ 397 (1064)
+..+...+....-.+.+..++.+ +.+-+..+..+..+.. .+..|+|. ++- +..++.++++|+..++
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~I-------i~lgll~gsll~aY~Vt~q~ltVGD--fVl----f~TYliqLy~PLN~FG 496 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGI-------IGLGLLAGSLLCAYRVTEQTLTVGD--FVL----FLTYLIQLYMPLNFFG 496 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-------hhhHHhhhhheeeeeeeeccccccc--eeh----HHHHHHHHhCchHHHH
Confidence 44333222221112222233322 1111111111222222 22345554 222 2345678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEE
Q 001511 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477 (1064)
Q Consensus 398 ~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIv 477 (1064)
..++.++....-.|++++++++++|+.+.+.. .+.....+.|+|+||+|.|.+++++|+||||++.||+.+|+|
T Consensus 497 T~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a------~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlV 570 (790)
T KOG0056|consen 497 TYYRSIQKNFIDMENMFDLLKEEPEVVDLPGA------PPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALV 570 (790)
T ss_pred HHHHHHHHhhhhHHHHHHHhhcCchhhcCCCC------CCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEE
Confidence 99999999999999999999988876542211 112234678999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
||||+||||++|+|.++++.++|.|.+||+| .++|++||.||||..+|++||..||.|+.+. +++|++
T Consensus 571 G~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~------Asneev 644 (790)
T KOG0056|consen 571 GPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS------ASNEEV 644 (790)
T ss_pred CCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC------CChHHH
Confidence 9999999999999999999999999999987 5789999999999999999999999998765 578999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--Cc
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GT 626 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~ 626 (1064)
.++++.++++|.+-.+|+++.+ ++|-.|||||||||||||+++++|.|++|||+|||||..+|+.|+..+.+. ++
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~R 724 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANR 724 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999998765 468899999999999999999999999999999999999999999999874 99
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|.|+|+||++++-+||.|++++++
T Consensus 725 TtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 725 TTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred ceEEEeeeehheecccEEEEEeCC
Confidence 999999999999999999999975
No 38
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.2e-56 Score=587.76 Aligned_cols=454 Identities=17% Similarity=0.209 Sum_probs=324.3
Q ss_pred HHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001511 179 VTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1064)
Q Consensus 179 L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~ 257 (1064)
..+++|.+.|+++++.|++||++. .++..+|+++|++.+...+...+..++..++..+. +.+++++.+|.+.++++.+
T Consensus 1029 ~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~-~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICS-SILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999875 67999999999999887776655555544443322 2334455566333322221
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1064)
Q Consensus 258 ~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 337 (1064)
..+...+..++.+..++..+......+.+.....+...++++|++|+.++.+.+++.+..++..+..........|.+..
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333344444444444455556677788888999999999999998777777776665444333344444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 338 QDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 338 ~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
..++..+...+++++.+.. .+.+ .+..+.|.. ... ..+...+..++..+...+..++....+.+|+.+++
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~g~l--~~~----l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1257 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIG-TMLR---ATSQEIGLV--SLS----LTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhc---cCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222111111111110 0101 112234421 111 22234455677777888888999999999999998
Q ss_pred hhchhcccCC--C-------------C------CCCCCC---CCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCC
Q 001511 418 VISRELSIED--K-------------S------PQRNGS---RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGS 472 (1064)
Q Consensus 418 ~~~~~~~~~~--~-------------~------~~~~~~---~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge 472 (1064)
+..++...+. . . ...... .+..+..+.|+|+||+|+|+++ +++|+||||+|++||
T Consensus 1258 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge 1337 (1560)
T PTZ00243 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPRE 1337 (1560)
T ss_pred hcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCC
Confidence 6433211000 0 0 000000 0011124679999999999765 459999999999999
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCC
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1064)
++||||+||||||||+++|+|+++|++|+|.+||+| .++|++|++|||||++|++||+|||.... ..
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-------~~ 1410 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-------EA 1410 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-------CC
Confidence 999999999999999999999999999999999976 46899999999999999999999996431 25
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001511 547 THGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVR 622 (1064)
Q Consensus 547 ~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~-P~iliLDEPTSaLD~~~~~~l~~~l~ 622 (1064)
++++++++++.+++++++.++|.+.++ +.|.+||||||||++|||||+++ |+|||||||||+||+++++.+++.++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 789999999999999999999986554 36789999999999999999996 89999999999999999999999987
Q ss_pred h--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 623 A--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 623 ~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+ .++|+|+||||++++..+|+|++|+++
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 6 389999999999999999999999974
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-56 Score=585.58 Aligned_cols=456 Identities=17% Similarity=0.217 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001511 173 LQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYV 251 (1064)
Q Consensus 173 ~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~ 251 (1064)
.....+..+++|.++++++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+. +.+++.++++ +.
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~-~~i~~~~~~~-~~ 1052 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLS-TFALIGTVST-IS 1052 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 333344778889999999999999999875 67999999999999887776665555544433222 1222233333 22
Q ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 252 FWILAYVLGAGTMMRNFS-PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHD 330 (1064)
Q Consensus 252 li~l~~~~l~~~i~~~~~-~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~ 330 (1064)
+++++.+++..++...+. +..++..+......+.+.....+...++++||+|+.+++..+...+..+...+........
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1495)
T PLN03232 1053 LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSS 1132 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222 2222233333334444555667777899999999998766543333322222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 331 HWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409 (1064)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~-~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~ 409 (1064)
..|.+....+ ++..+.++......+ .+.. + ...+....+. .+..+...+.+++..+...+..++....+
T Consensus 1133 ~~wl~~~~~~----~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~g---~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 1202 (1495)
T PLN03232 1133 NRWLTIRLET----LGGVMIWLTATFAVLRNGNA--E-NQAGFASTMG---LLLSYTLNITTLLSGVLRQASKAENSLNS 1202 (1495)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHccccc--c-ccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221111 111111110000001 1111 0 0011111111 12233445556777777788889999999
Q ss_pred HHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHH
Q 001511 410 ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1064)
Q Consensus 410 ~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl 488 (1064)
.+|+.++++.++|........ .+....+..+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+
T Consensus 1203 ~eRi~e~~~~~~e~~~~~~~~---~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1203 VERVGNYIDLPSEATAIIENN---RPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHhcCCccccccccCC---CCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999998766532110000 000111234679999999999654 6799999999999999999999999999999
Q ss_pred HHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh
Q 001511 489 RVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562 (1064)
Q Consensus 489 ~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~ 562 (1064)
++|+|+++|++|+|.+||+| .++|++|++|||||++|++||+|||.++. +.+++++.++++.+++++
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-------~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-------EHNDADLWEALERAHIKD 1352 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-------CCCHHHHHHHHHHcCCHH
Confidence 99999999999999999976 46899999999999999999999998753 257899999999999999
Q ss_pred HHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhH
Q 001511 563 LLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1064)
Q Consensus 563 ~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~ 637 (1064)
+++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||+++++.+++.+++. ++|+|+||||+++
T Consensus 1353 ~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred HHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 99999976554 367899999999999999999999999999999999999999999998863 8999999999999
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
+..+|+|++|++|
T Consensus 1433 i~~~DrIlVL~~G 1445 (1495)
T PLN03232 1433 IIDCDKILVLSSG 1445 (1495)
T ss_pred HHhCCEEEEEECC
Confidence 9999999999974
No 40
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.4e-60 Score=537.65 Aligned_cols=311 Identities=25% Similarity=0.395 Sum_probs=294.1
Q ss_pred CCCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhc-CCceehhHhhcCHHHHHHHHHHHHHHhhhHHH
Q 001511 735 PRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASL-NGTTVKYVLEQDKASFVRLIGVSVLQSAASSF 813 (1064)
Q Consensus 735 ~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l-~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~ 813 (1064)
+..++.+..++.++..|+..+++...+++..+.+++||....|+... .|.+-.+++.+|.+.|.+.+.+.++..+..+.
T Consensus 58 ~~~f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~ 137 (659)
T KOG0060|consen 58 DKVFFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISL 137 (659)
T ss_pred hHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999998887 66666999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHH
Q 001511 814 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT 893 (1064)
Q Consensus 814 ~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~ 893 (1064)
+|+..||..+.|+|+||.|||+|+|++||++++|||++|+|+||+|||||||+||+|||+.+++||+|++||.+|+++|+
T Consensus 138 ~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~ 217 (659)
T KOG0060|consen 138 LNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYT 217 (659)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHH
Q 001511 894 WRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRE 973 (1064)
Q Consensus 894 ~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~ 973 (1064)
|+|.++.|+.||..+++|+++++.+.|.+.+|+|+++++||++||||||.|+|+++||||||||+|+++|+..+++.|++
T Consensus 218 ~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~ 297 (659)
T KOG0060|consen 218 FRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRN 297 (659)
T ss_pred hHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHHHHHhhhhcccc
Q 001511 974 LLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIHCLDSHLSSITH 1047 (1064)
Q Consensus 974 l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1064)
|++|+++++.+|||.+++||++- |++++|+|++++.|+|... -..++|+.+..+-+.+|--.|...+++++-
T Consensus 298 Lv~~l~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~p~Fs~h-~y~~~s~aEL~~~i~~na~~~i~Li~~f~~ 369 (659)
T KOG0060|consen 298 LVQHLRELMSFRFWLGFIDNIFD-YLGGILSYVVIAIPFFSGH-VYDDLSPAELSGLISNNAFVFIYLISAFGR 369 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhheeeEEeeeeeccc-ccCCcCHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999997 9999999999999999832 456888999888888888888877777653
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.7e-55 Score=528.33 Aligned_cols=509 Identities=16% Similarity=0.163 Sum_probs=344.1
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRL-AKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITG 169 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l-~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~ 169 (1064)
++++++++++. ++..+++.++.+.+.+.. +.+.++++|.+.. .... +..+++++++..++..+..|+..
T Consensus 4 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (547)
T PRK10522 4 LRLVWRQYRWP-----FISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALT 73 (547)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666653 444555555555565553 5666777775432 1111 11111111111222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1064)
Q Consensus 170 ~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~ 248 (1064)
.++ .++..++|.++|+++...|+++|++. .++..+|+++|++.+...+.. +..++..++..++ ...++++++|
T Consensus 74 ~~~----~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 74 TLG----HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHH----HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 444 44778899999999999999999764 779999999999988765443 3333334333322 2345667899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-
Q 001511 249 KYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV- 327 (1064)
Q Consensus 249 ~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~- 327 (1064)
.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++++ ++.+..+ +.+.+++++..+..++.
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEPDAQEYRHHI 225 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhHHHHHHHhhh
Confidence 99999888888777777778888888777777788888888888888888885 4443321 12334444444333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLS 407 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~ 407 (1064)
.+..........+........+++++ ++++... ..+.+.+.+++. .+..+..|+..+......++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~------~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 226 IRADTFHLSAVNWSNIMMLGAIGLVF----YMANSLG--WADTNVAATYSL------TLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh--cCChHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222211111111111111111 1222211 112222222211 12224467888888888999999
Q ss_pred HHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHH
Q 001511 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487 (1064)
Q Consensus 408 ~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTL 487 (1064)
.+.+|+.++++.+++.+.+. . . . .+..+.++++||+|.|++++++|+|+||+|++||+++|+||||||||||
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~-~--~----~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR-P--Q----A-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHhcccccccccc-c--c----c-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999875433211000 0 0 0 0112469999999999866789999999999999999999999999999
Q ss_pred HHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 488 FRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 488 l~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
+++|+|+++|++|+|.+||.+ .++|++++||||+|++|++|+++| + . ..+++++.++++.+++.
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~------~~~~~~~~~~~~~~~l~ 435 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K------PANPALVEKWLERLKMA 435 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C------chHHHHHHHHHHHcCCc
Confidence 999999999999999999975 257889999999999999999998 1 1 24567888899999988
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001511 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1064)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1064)
+..+. +.+. ..|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+||||++.
T Consensus 436 ~~~~~-~~~~--~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 436 HKLEL-EDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred hhhhc-cccC--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 76543 2211 13678999999999999999999999999999999999999998877642 48999999999999
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
++.+|+|++++++
T Consensus 513 ~~~~d~i~~l~~G 525 (547)
T PRK10522 513 FIHADRLLEMRNG 525 (547)
T ss_pred HHhCCEEEEEECC
Confidence 9999999999875
No 42
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-52 Score=548.02 Aligned_cols=496 Identities=15% Similarity=0.163 Sum_probs=332.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS--KYI--TGTLSLQFRKIVTKL 182 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~--~yl--~~~l~~~~r~~L~~~ 182 (1064)
++..+++.++.+++....|.+.+.+++.+.....+ ..... +.+++++..++..+. .|. ...++.+ +...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----ir~~ 375 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WVGYV--YAFLIFFGVTFGVLCESQYFQNVGRVGFR----LRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 44445556677777778899999998876543321 11111 111111111222111 122 2334444 5556
Q ss_pred HHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--
Q 001511 183 IHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL-- 259 (1064)
Q Consensus 183 l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~-- 259 (1064)
++...|++.+.++..++++. .++..+|+++|++++.+.. ..+..+...++..++..+.+ + +.+.+.+++.++
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l--~--~~lg~~~l~~~~v~ 450 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL--Y--QQLGVASLFGSLIL 450 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--H--HHHhHHHHHHHHHH
Confidence 67788999999998877654 6789999999999987764 23333332222222211111 1 112221111111
Q ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 260 -GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQ 338 (1064)
Q Consensus 260 -l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~ 338 (1064)
+...+...++++..+..++.++...+......+..+++++||+|+.|+.+.+++++..++..+..++. ....++..
T Consensus 451 ~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~---~~~~~~~~ 527 (1495)
T PLN03232 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA---QLLSAFNS 527 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 11112334556666666666666666667788888999999999999998766655444433322221 12222111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 339 DFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 339 ~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
++...... ++.++. +++... .+..+.| .+++.+. ++..+..|+..+......+.++..+++|+.+++
T Consensus 528 -~~~~~~~~-~~~~~~----fg~~~v~~~~lt~g--~vf~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L 595 (1495)
T PLN03232 528 -FILNSIPV-VVTLVS----FGVFVLLGGDLTPA--RAFTSLS----LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL 595 (1495)
T ss_pred -HHHHHHHH-HHHHHH----HHHHHHhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111111 122211 2233444 3444332 344455677788888889999999999999999
Q ss_pred hhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC
Q 001511 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1064)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1064)
+.+++..... . + .....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|++
T Consensus 596 ~~~~~~~~~~-~-~------~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 596 LSEERILAQN-P-P------LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred cCcccccccc-C-C------cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 7654321110 0 0 0011246999999999975 367999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc--
Q 001511 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-- 573 (1064)
Q Consensus 496 ~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~-- 573 (1064)
+|++|.+. .+|++|+||+|+|++|++||+|||.++.+ .++++..++++.+++.+.++.+|++.++
T Consensus 668 ~~~~G~i~------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 668 SHAETSSV------VIRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred cccCCCEE------EecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 99998763 34668999999999999999999999853 3678899999999999999999986655
Q ss_pred -CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 574 -NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 574 -~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~-l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.|.+|||||||||+||||++++|+|+||||||||||+++++++.+. ++. .++|+|+|||+++.++.+|+|++|++
T Consensus 735 Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 36889999999999999999999999999999999999999988764 443 58999999999999999999999986
Q ss_pred C
Q 001511 650 E 650 (1064)
Q Consensus 650 ~ 650 (1064)
+
T Consensus 815 G 815 (1495)
T PLN03232 815 G 815 (1495)
T ss_pred C
Confidence 4
No 43
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.7e-52 Score=546.48 Aligned_cols=499 Identities=15% Similarity=0.140 Sum_probs=330.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH--STSKYITGTLSLQFRKIVTKLIH 184 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~--~~~~yl~~~l~~~~r~~L~~~l~ 184 (1064)
++..+++.++..++....|.+.+.+++.+.....+ ....+. .+++ ++..++. ....|+.. ..++..++...++
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~~-~~~l-~~~~~~~~~~~~~~~~~--~~~~~~~ir~~L~ 377 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYIY-AFSI-FVGVVLGVLCEAQYFQN--VMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHH-HHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 44455556666777778899999998877644321 111111 1111 1111111 11122222 1233333555667
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001511 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1064)
Q Consensus 185 ~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~-l~~~~l~~ 262 (1064)
..+|+|.++++...+++. .++..+++++|++++...... +..+...++..++..+.+. ...+++.++ ++++++..
T Consensus 378 ~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~--~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLY--QQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 788999999998877653 578999999999998776532 3333323222222111111 111111111 11111122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1064)
Q Consensus 263 ~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1064)
.+...+.++..+...+..+...+......+..+++++||+|+.|+...+++++..++..+..++ ......+ ..++.
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~---~~~~~~~-~~~~~ 530 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRK---AQLLSAF-NSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHH
Confidence 2233455566666655555555566677888899999999999998876655444332222221 1111111 11111
Q ss_pred HHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001511 343 KYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1064)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1064)
..... ++.++. +++.. ..+..+.| .+++.+. ++..+..|+..+......+.++..+++|+.++++.++
T Consensus 531 ~~~~~-~v~~~~----fg~~~~~~g~Lt~g--~vf~~l~----l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e 599 (1622)
T PLN03130 531 NSIPV-LVTVVS----FGVFTLLGGDLTPA--RAFTSLS----LFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEE 599 (1622)
T ss_pred HHHHH-HHHHHH----HHHHHHhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 11110 111111 11111 12334554 3334332 2344456777788888899999999999999987543
Q ss_pred hcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc
Q 001511 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1064)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~ 499 (1064)
....+. . .. ....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++
T Consensus 600 ~~~~~~-~--~~-----~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 600 RVLLPN-P--PL-----EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred cccccC-C--cc-----cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 221100 0 00 011246999999999975 3679999999999999999999999999999999999999999
Q ss_pred -cEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CC
Q 001511 500 -GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575 (1064)
Q Consensus 500 -G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~ 575 (1064)
|+|.+.| +|+||+|+|++|++||+|||.++.+ .++++..++++.+++.++++.+|++.++ +.
T Consensus 672 GG~I~l~~-------~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 672 DASVVIRG-------TVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred CceEEEcC-------eEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 9998654 7999999999999999999999854 3578899999999999999999986554 36
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-KVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~-~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|.+|||||||||+||||++++|+|+||||||||||+++++++.+ .++. .|+|+|+|||+++.+..+|+|++|+++
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G 815 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCC
Confidence 88999999999999999999999999999999999999998765 4443 489999999999999999999999864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-53 Score=560.33 Aligned_cols=456 Identities=17% Similarity=0.209 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001511 171 LSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249 (1064)
Q Consensus 171 l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~ 249 (1064)
+..+...+..++++.+.|+++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+.+ .+++.+++|.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~-l~~i~~~~p~ 1026 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA-IFVVSVLQPY 1026 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33333444778899999999999999999874 679999999999998887776666665555443332 2334456776
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLH 329 (1064)
Q Consensus 250 L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~ 329 (1064)
++++++.++++..++..++.+..+++.+......+.+.....+...++++||+|+.++.+.+++.+..+...........
T Consensus 1027 l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1490)
T TIGR01271 1027 IFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLS 1106 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433332222222222333333333333333444455566777779999999999999887777776654443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 330 DHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409 (1064)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~ 409 (1064)
...|.+....++......++ .++. ++... .+.+++|.. +. + ...+..++..+...+..+.....+
T Consensus 1107 ~~~wl~~~~~~i~~~~~~~~-~~l~----~~~~~-~~~g~~g~~--l~---~----~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1107 TLRWFQMRIDIIFVFFFIAV-TFIA----IGTNQ-DGEGEVGII--LT---L----AMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH----HHHhc-CCccHHHHH--HH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332211111111 1111 11111 112223321 11 1 222334455555666788888999
Q ss_pred HHHHHHHHhhchhcccCCCCC-----------CCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEE
Q 001511 410 ADRIHELMVISRELSIEDKSP-----------QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLIT 477 (1064)
Q Consensus 410 ~~Ri~ell~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIv 477 (1064)
.+|+.++++.++|...+.... .........+..+.|+|+||+++|++ .+++|+|+||+|++||++|||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEE
Confidence 999999987665532111000 00000011233568999999999975 468999999999999999999
Q ss_pred cCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
|+||||||||+++|+|+++ ++|+|.+||++ .++|++|+||||+|++|+||||+||.... ..+++++
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-------~~tdeei 1323 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-------QWSDEEI 1323 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-------CCCHHHH
Confidence 9999999999999999997 79999999976 46799999999999999999999996421 2578999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--Cc
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GT 626 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~ 626 (1064)
+++++.+++.+++.++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++. ++
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999875444 357899999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+|+||||++++..+|+|++|+++
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999875
No 45
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=100.00 E-value=2.8e-56 Score=496.10 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=271.1
Q ss_pred CCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHh
Q 001511 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIA 815 (1064)
Q Consensus 736 ~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n 815 (1064)
..+..+...+++...|+...++.+.++.+.+++++||+++++++..+|.+.++|+++|.++|.+.++.|+++++|++++|
T Consensus 4 ~~flr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~ 83 (281)
T PF06472_consen 4 RQFLRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLN 83 (281)
T ss_pred hHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888899888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHH
Q 001511 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWR 895 (1064)
Q Consensus 816 ~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~ 895 (1064)
+..+|++.+|+++||++||+|+|+.||+|++||++.++|++++|||||||+||++||+..++||.+++||++|++.|++.
T Consensus 84 ~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~ 163 (281)
T PF06472_consen 84 SILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVI 163 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHH
Q 001511 896 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 975 (1064)
Q Consensus 896 l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~ 975 (1064)
|++..|..++..+++|+++++.+++.++|||+++++++|++||+||+.|+|+++||||||||+|+++|+..+++.|..++
T Consensus 164 L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~ 243 (281)
T PF06472_consen 164 LWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALI 243 (281)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHh
Q 001511 976 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013 (1064)
Q Consensus 976 ~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~ 1013 (1064)
+|.+.+.++++++++++++++||++.++||.+|++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 244 DNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999986
No 46
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-52 Score=529.64 Aligned_cols=471 Identities=21% Similarity=0.270 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHH
Q 001511 148 SENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQ 226 (1064)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~ 226 (1064)
..+.+++++..++..+..+.....+.+ ..++++++.++++.+-||+|||.. .|...+|.+.|++.+...+...+.
T Consensus 862 ~vY~~l~~~~~~~~~~rs~~~~~~~l~----aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 862 GVYALLGVASSLLTLLRSFLFAKGGLK----ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH
Confidence 334444444444333444444455555 566788999999999999999975 679999999999998887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001511 227 DDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQ----LHSRLRTHAESIAF 302 (1064)
Q Consensus 227 ~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~----~~~~l~~~~e~Ik~ 302 (1064)
.++..++..+ ....++.+..|...+.++.+.. +..++.+.+.+..++..+.++..|+ ...+..++..+|++
T Consensus 938 ~~~~~~~~~l-~~~~vi~~~~P~fli~~~pl~v----~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRA 1012 (1381)
T KOG0054|consen 938 FFLQSLLNVL-GILVVISYVTPWFLIAIIPLGV----IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRA 1012 (1381)
T ss_pred HHHHHHHHHH-HHHHHhhHHhHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeee
Confidence 6665554432 2223334445544443333222 2233444555555666666666554 34566668889999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHH
Q 001511 303 YGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYH 382 (1064)
Q Consensus 303 ~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~ 382 (1064)
|+.+++..+...++.+...+...-....++|.++-..++..++..+.+++.++ ..... ...+..|. .+.|.
T Consensus 1013 f~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl---~~~~~-~~~g~vGL-----slsya 1083 (1381)
T KOG0054|consen 1013 FGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL---LPSGL-ISPGLVGL-----SLSYA 1083 (1381)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCC-CCcchHHH-----HHHHH
Confidence 99999998777777776666655555667777776665543332222222221 11111 11122331 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-Ceee
Q 001511 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLV 461 (1064)
Q Consensus 383 ~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L 461 (1064)
+ ++-+.+..+.....++..-..+.||+.|..+.++|.+ ...... .+.+.++..|.|+|+|++++|..+ .++|
T Consensus 1084 l----~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p--~~~~~~-~pp~~WP~~G~I~f~~~~~RYrp~lp~VL 1156 (1381)
T KOG0054|consen 1084 L----QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP--LEIEES-RPPPSWPSKGEIEFEDLSLRYRPNLPLVL 1156 (1381)
T ss_pred H----HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC--CCCcCC-CCCCCCCCCCeEEEEEeEEEeCCCCcchh
Confidence 2 2334444555566677778899999999998776621 111111 123345678999999999999655 6899
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcC
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1064)
+||||+|+|||+|||||.+|||||||..+|.|+.+|.+|+|.+||.| .++|++++++||||.+|+||+|.|+.-
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP 1236 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP 1236 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc
Confidence 99999999999999999999999999999999999999999999987 578999999999999999999999863
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCc--cc-CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK--EI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~--~~-~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~ 612 (1064)
.. +.+|++++++|++++|.+++.+.|.+. .+ +.|.++|-||||.+++||||+++++||+|||+|+++|++
T Consensus 1237 -f~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1237 -FD------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred -cc------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 22 258999999999999999999988643 33 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 613 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 613 ~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|...|++.+++. ++|||.|+||++++-++|||+|||+|
T Consensus 1310 TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1310 TDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 999999999984 99999999999999999999999975
No 47
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-49 Score=523.68 Aligned_cols=506 Identities=15% Similarity=0.167 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI-SENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l-~~~~~l~~-~~~~~~~~~~yl~~~l~~~~r~~L~~~l~ 184 (1064)
++..+++.++.+.++...|.+.+.+++.+.+...+...... +..++++. +.+++.....+....++.+ +...++
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ir~~L~ 394 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMR----IKTAVM 394 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 44445566666777788888888888876543222111111 11111111 1112222223344455555 555667
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001511 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1064)
Q Consensus 185 ~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~-l~~~~l~~ 262 (1064)
...|+|+++++..++++. .++..+++++|++++.+.. ..+..+...++..++..+. ++..++.+.++ ++++++..
T Consensus 395 ~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~l--l~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 395 GAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYF--LWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH
Confidence 788999999998887664 5689999999999987643 2333333333322222222 22333322222 22223333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1064)
Q Consensus 263 ~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1064)
.+...+++.+.+...+..+...+......+..++++.||+|+.|+...+++++..++..+..++. .+ ...+..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~---~~-~~~~~~~~~ 547 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKS---AY-LHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHH
Confidence 33444556666666555555555556788888999999999999988766655544433322211 11 111111111
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001511 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRE 422 (1064)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~ 422 (1064)
..... +..++.+..+. +..+..+++.+..++.+.+ +..+..|+..+......+.++..+.+|+.++++.+++
T Consensus 548 ~~~~~-~~~~~~f~~~~---~~~~~~~l~~~~~f~~l~l----~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 548 VCTPF-LVALITFAVYV---TVDENNILDAEKAFVSLAL----FNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHHH-HHHHHHHHHHH---HhcCCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 11111 11111111111 0011123333333443322 3334567888888889999999999999999976543
Q ss_pred cccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccE
Q 001511 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1064)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~ 501 (1064)
.... ..... ......+.++++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 620 ~~~~---~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 620 EPDS---IERRT--IKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred cccc---ccccc--cCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 2110 00000 000112369999999999753 57999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCC
Q 001511 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1064)
Q Consensus 502 I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~ 578 (1064)
|.++| +|+||||+|+++++||+|||.++.. .++++..++++.+++.+.++.+|.+.++ +.|.+
T Consensus 695 i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 695 VHMKG-------SVAYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEECC-------EEEEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 99987 6999999999999999999998753 2345677788888998888888875433 36789
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||||++||||++++|+++|||||||+||+.+++.+.+.+.+ .++|+|+|||+++.+..+|+|++|+++
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999999999887742 379999999999999999999999864
No 48
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.9e-51 Score=461.24 Aligned_cols=492 Identities=19% Similarity=0.217 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001511 119 ALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKIS 197 (1064)
Q Consensus 119 ~ls~~l~~~~~~~i~a~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~ 197 (1064)
.+.+..|...=.++|.+... +.+.... ..++++.+.++..+..++...+-.++-.++...+....|......+..
T Consensus 37 iL~L~~~lyMLQVyDRVL~S~s~~TLv~----Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~ 112 (580)
T COG4618 37 LLALTGPLYMLQVYDRVLPSRSVPTLVM----LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLL 112 (580)
T ss_pred HHHHhhhHHHHHHHhhhccCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHh
Confidence 44445566666677766543 3333222 122223333344556666777777777778888888888877655543
Q ss_pred cccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH-H
Q 001511 198 HVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL---LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAF-G 273 (1064)
Q Consensus 198 ~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~---~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~-~ 273 (1064)
-. ..++-. -.-+|.+++.+++.. ..+..++|.. +|. .+++.++|.+.++.++...+++.+.. +.... +
T Consensus 113 ~~--~~g~~~-Q~LrDL~qvR~Fltg---~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a~~ga~iLv~la~-ln~~~t~ 184 (580)
T COG4618 113 RR--GSGDGL-QPLRDLDQVRQFLTG---TGLTAFFDAPWMPLYL-AVIFLFHPWLGLIALAGAIILVVLAL-LNERATR 184 (580)
T ss_pred hc--CCCccc-cchhhHHHHHHHHcC---CCcchhcCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 21 112212 234588875554432 1233444432 232 22344578777776654443333222 22222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 274 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 353 (1064)
Q Consensus 274 k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 353 (1064)
+..++..+....-+...+....|+|+|++.|....-.++|.+...............+...+..+..+-..+.. .++
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs---~iL 261 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQS---AVL 261 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 22233333344444566777779999999999999998888877776665443322222222223322222221 122
Q ss_pred hhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCC
Q 001511 354 IIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432 (1064)
Q Consensus 354 ~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~ 432 (1064)
. .|+++. .+..|-|. +++. ..++.....|+-.....++.+..+..+.+|+.+++...++.... -
T Consensus 262 g----~GA~Lvi~ge~t~G~--mIA~----SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m-- 326 (580)
T COG4618 262 G----LGAWLVIKGEITPGM--MIAG----SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER---M-- 326 (580)
T ss_pred h----cceeeEEcCcCCcch--hhHH----HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC---C--
Confidence 2 233333 23445553 2221 11234555677778888999999999999999999876543211 0
Q ss_pred CCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---
Q 001511 433 NGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1064)
Q Consensus 433 ~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1064)
..+...+.+.+|++++..|+. +++|+|+||++.+||.++||||||||||||.|+|.|.|+|.+|.|++||-+
T Consensus 327 ----~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 327 ----PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred ----CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 111125689999999987764 589999999999999999999999999999999999999999999999965
Q ss_pred ---ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccC---CCCCcChH
Q 001511 509 ---SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDELSLG 582 (1064)
Q Consensus 509 ---~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~---~g~~LSGG 582 (1064)
+++.++|||+|||..+|.|||.|||+-..+ +.+++++.++.+.+|.+|++-++|++|++. .|..||||
T Consensus 403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred CCHHHhccccCcCcccceecCCcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 456789999999999999999999985432 257788999999999999999999988874 57899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||++||||+.+|.+++||||-|+||.+.|..+.+.+ ++.|.|+|+||||++.+..+|+|++|+++
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 999999999999999999999999999999999998876 45799999999999999999999999875
No 49
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-52 Score=458.33 Aligned_cols=447 Identities=18% Similarity=0.233 Sum_probs=321.4
Q ss_pred HHHHHHHHHHhhhhccccccccCCCCChhHHHHc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001511 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLAS-DVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1064)
Q Consensus 179 L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~-Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~ 257 (1064)
..+.+.-+.|.|+..+++.|+-++.+.+.+|..+ ....+...+..++...+..++........++...+|..++++++.
T Consensus 13 a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vt 92 (497)
T COG5265 13 AVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVT 92 (497)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3444556678899999998886554444443322 122233333344444455555544433444445688887777655
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1064)
Q Consensus 258 ~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 337 (1064)
+.+..++.....-......+...+..++.........-|-|++|.|+.|+.|..++.+..+...+...+....-.+..+.
T Consensus 93 v~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~g 172 (497)
T COG5265 93 VILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFG 172 (497)
T ss_pred HHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333322221112222333333443443333444889999999999998665555544444333322223334444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 338 QDFLLKYLGATVAVILIIEPFFAG-NLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416 (1064)
Q Consensus 338 ~~~~~~~~~~~~~~il~~~~~~~g-~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~el 416 (1064)
+..+... + ...... .+. ....+.+|+|...+.. .++.++..|+.-++..++++.+...-.++.+++
T Consensus 173 Q~~I~~~-~--l~~~m~----~s~~~v~~g~~TvgD~V~~N------all~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 173 QTAIFST-G--LRVMMT----MSALGVEEGQLTVGDLVNVN------ALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred hHHHHHH-H--HHHHHh----hcHHHHhhccCCchhHHhHH------HHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 4433211 1 111111 111 1223456777644333 234566678888888999999999999999999
Q ss_pred HhhchhcccCCCCCCCCCCCCCC-CCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC
Q 001511 417 MVISRELSIEDKSPQRNGSRNYF-SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1064)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1064)
++.+.+..+..... ... ...+.+.|+||+|.|...+++|+++||++++|+.+++|||||+||||++++|.++|
T Consensus 240 l~~~~~v~d~pda~------~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 240 LDVEAEVSDAPDAP------PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred hccchhhccCCCCc------cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 98877765422111 111 23467999999999988899999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCC
Q 001511 496 PLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569 (1064)
Q Consensus 496 ~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~ 569 (1064)
++++|.|.+||+| +++|+.||+||||..+|++|+..|+.|+.+. .+++++..+++.+.+++++..+|.
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~------at~eev~aaa~~aqi~~fi~~lP~ 387 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD------ATAEEVGAAAEAAQIHDFIQSLPE 387 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc------ccHHHHHHHHHHhhhhHHHHhCch
Confidence 9999999999987 4689999999999999999999999998764 688999999999999999999998
Q ss_pred Cccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEE
Q 001511 570 EKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 570 ~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~I 644 (1064)
++.+ ++|-.|||||||||||||+++++|+|++|||+||+||..+|++++..+++ .|+|.++|+||++++..+|.|
T Consensus 388 gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adei 467 (497)
T COG5265 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEI 467 (497)
T ss_pred hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceE
Confidence 7665 36778999999999999999999999999999999999999999999986 599999999999999999999
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+||+++
T Consensus 468 ivl~~g 473 (497)
T COG5265 468 IVLDNG 473 (497)
T ss_pred EEeeCC
Confidence 999975
No 50
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-46 Score=493.65 Aligned_cols=495 Identities=16% Similarity=0.186 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 110 LVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL-FFQL-ISENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1064)
Q Consensus 110 ~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~-~~~~-l~~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1064)
.++..++...+....|.+.+.+++.+.....+. .... ++..++++ ++..++.....|....++.++|.. +...
T Consensus 85 ~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~----L~~~ 160 (1490)
T TIGR01271 85 YGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIA----LFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 333445666777788888888887763211111 1111 11111111 111122333445555666665544 4567
Q ss_pred HHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001511 187 YFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1064)
Q Consensus 187 ~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~ 265 (1064)
.|+|.++++...+++ ..+...+++++|++++...+..+ ..+....+..+++.+.++.... ..+++.++++++...+.
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~ 238 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQ 238 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 799999999877765 35788999999999987755433 2222222222222222222222 23333344444445555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1064)
Q Consensus 266 ~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1064)
.++++++.+...+..+...+......++.++++.||+|+-|+.+.+++++.-++-.+..++.. +.. .+...+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~---~~~-~~~~~~~~~- 313 (1490)
T TIGR01271 239 ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIA---YLR-YFYSSAFFF- 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHH-
Confidence 666777766666555555555567888899999999999999887554443332222222211 111 111111111
Q ss_pred HHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001511 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1064)
Q Consensus 346 ~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i-~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~ 424 (1064)
...++.++.+ +++...+..+++ ..++.+.++.. +..++ ..+......+.++..+++||.+++..++...
T Consensus 314 ~~~~~~~~~f----~~y~~~~~~~~~--~~ft~lal~~l----L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 314 SGFFVVFLSV----VPYALIKGIILR--RIFTTISYCIV----LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHHH----HHHHHhCCCcHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 1111111111 111111122333 33343332221 11233 3466677788889999999999997543211
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC---------------------------------CCeeeeeceEEEeCC
Q 001511 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVEPG 471 (1064)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~---------------------------------~~~~L~~vsl~i~~G 471 (1064)
... . .....++++|++|.|+. .+++|+|+||+|++|
T Consensus 384 ~~~-----~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G 452 (1490)
T TIGR01271 384 LEY-----N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKG 452 (1490)
T ss_pred ccc-----c------CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCC
Confidence 000 0 01123666666666531 146899999999999
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
|.++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|+++++||+|||.++... ++++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~~ 518 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSY-------DEYRY 518 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhcccc-------chHHH
Confidence 99999999999999999999999999999999988 59999999999999999999987532 23456
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cC
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MG 625 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~-l~~--~g 625 (1064)
.++++.+++.+.++.+|.+..+ +.|.+|||||||||+||||++.+|+++||||||||||+.+++++.+. +.+ .|
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 6778888898888888875443 35789999999999999999999999999999999999999999874 433 48
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001511 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+|+|||+++.+..||+|++|+++
T Consensus 599 ~tvilvtH~~~~~~~ad~ii~l~~g 623 (1490)
T TIGR01271 599 KTRILVTSKLEHLKKADKILLLHEG 623 (1490)
T ss_pred CeEEEEeCChHHHHhCCEEEEEECC
Confidence 9999999999999999999999964
No 51
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.8e-46 Score=488.46 Aligned_cols=508 Identities=16% Similarity=0.145 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF----LLSTMHSTSKYITGTLSLQFRKIVTKL 182 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~----~~~~~~~~~~yl~~~l~~~~r~~L~~~ 182 (1064)
+++.+++.++..++....|.+.+.+++.+........+.. + .+++++ +.+++.....|.....+.++|..+
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~-~-l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L--- 320 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGL-G-LVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSAL--- 320 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455666677778888999999999986533222111111 1 111111 112223334456666666655544
Q ss_pred HHHHHHhhhhcccccccc---CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001511 183 IHTRYFENMAYYKISHVD---GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL 259 (1064)
Q Consensus 183 l~~~~f~~~~~~~i~~~~---~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~ 259 (1064)
....|+|.+..+..... ...++..+.+++|++++...+..+ ..+....+..++..+.|...+.| .+++.+++++
T Consensus 321 -~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~ 397 (1560)
T PTZ00243 321 -NALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLL 397 (1560)
T ss_pred -HHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 56668888888765543 235678899999999987765433 22222332222222222222222 3333333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 260 GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQD 339 (1064)
Q Consensus 260 l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~ 339 (1064)
+...+..++.++..+...+..+....-.....++..+++.||+++-|+...+++++.-++-.+..++. ..... +..
T Consensus 398 v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~---~~~~~-~~~ 473 (1560)
T PTZ00243 398 VTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV---QLARV-ATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 33334445555555554444444433345678888899999999999988765554332222222211 11111 111
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 340 FLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1064)
Q Consensus 340 ~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~ 419 (1064)
++.......+.+ +.+..|. ...+..+.| .+++.+. ++..+..|+..+...+..+.++..+++||.++++.
T Consensus 474 ~~~~~~p~l~~~-~~f~~y~---~~g~~Lt~~--~vft~la----L~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 474 FVNNATPTLMIA-VVFTVYY---LLGHELTPE--VVFPTIA----LLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHH-HHHHHHH---HhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111111111 1111111 112233444 3444333 23344457777778888899999999999999975
Q ss_pred chhcc----c--C------C-C---CC----CCC-----------------C---------------CCCCCCCCCcEEE
Q 001511 420 SRELS----I--E------D-K---SP----QRN-----------------G---------------SRNYFSEANYIEF 447 (1064)
Q Consensus 420 ~~~~~----~--~------~-~---~~----~~~-----------------~---------------~~~~~~~~~~i~~ 447 (1064)
++... . . . . .. ... . ........+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 43100 0 0 0 0 00 000 0 0000001124566
Q ss_pred EeeEEEcC---------------------------------------CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHH
Q 001511 448 SGVKVVTP---------------------------------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1064)
Q Consensus 448 ~nvs~~y~---------------------------------------~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl 488 (1064)
+|+++.++ +++++|+|+||+|++||+++|+||||||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 66655421 234689999999999999999999999999999
Q ss_pred HHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 489 ~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
++|+|+++|++|+|.+++ +|+|+||+|+++++|++|||.++.. .+.++..++++.+++++.++.+|
T Consensus 704 ~~i~G~~~~~~G~i~~~~-------~i~yv~Q~~~l~~~Tv~enI~~~~~-------~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAER-------SIAYVPQQAWIMNATVRGNILFFDE-------EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHhcCCCCCCcEEEECC-------eEEEEeCCCccCCCcHHHHHHcCCh-------hhHHHHHHHHHHhhhHHHHHHhh
Confidence 999999999999998753 7999999999999999999998642 23456777888889998888888
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H--hcCcEEEEEccChhHHHhcC
Q 001511 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R--AMGTSCITISHRPALVAFHD 642 (1064)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l-~--~~g~TvI~ItH~l~~i~~~D 642 (1064)
.+..+ ..|.+|||||||||+|||||+.+|+++|||||||+||+.+++.+.+.+ . ..|+|+|+|||+++.+..+|
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 65433 357899999999999999999999999999999999999988876632 2 24899999999999999999
Q ss_pred EEEEEeCC
Q 001511 643 VVLSLDGE 650 (1064)
Q Consensus 643 ~Il~l~~~ 650 (1064)
+|++|+++
T Consensus 850 ~ii~l~~G 857 (1560)
T PTZ00243 850 YVVALGDG 857 (1560)
T ss_pred EEEEEECC
Confidence 99999964
No 52
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-52 Score=453.43 Aligned_cols=272 Identities=27% Similarity=0.345 Sum_probs=230.3
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-C----CccEEEeCCCC------c-
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-L----VSGHIAKPGVG------S- 509 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p----~~G~I~i~g~~------~- 509 (1064)
++++|++++|+.. ..+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|.+ +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999998653 479999999999999999999999999999999999998 4 57999999975 1
Q ss_pred --cc-cccEEEEecCCC---CCcccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCC
Q 001511 510 --DL-NKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1064)
Q Consensus 510 --~l-r~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~ 578 (1064)
.+ .+.|+||||||. .|..||.+++......+... .++..+++.++|+.+|+++ .++.||+ +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh--------e 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------E 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc--------c
Confidence 23 368999999996 35579999998766544321 2234568899999999974 6789997 9
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
|||||||||.||.||+.+|++||+||||+|||+.+++++++++++ .|.|+|+||||++.+. .||+|.
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~-------- 225 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA-------- 225 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--------
Confidence 999999999999999999999999999999999999999887753 5999999999999876 576665
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCCCCCCCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKS 733 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~~~~~~~~~~ 733 (1064)
|||+|+++|.++.+++|++ |.||||++|+++.|.. ..++..+||.+|
T Consensus 226 ------------------------------VMYaG~iVE~g~~~~i~~~-P~HPYT~~Ll~s~P~~--~~~l~~ipG~~p 272 (316)
T COG0444 226 ------------------------------VMYAGRIVEEGPVEEIFKN-PKHPYTRGLLNSLPRL--GERLPPIPGSPP 272 (316)
T ss_pred ------------------------------EEECcEEEEeCCHHHHhcC-CCChHHHHHHHhCccc--cCCcCCCCCCCC
Confidence 5667888899999999987 7999999999999987 556778899888
Q ss_pred CCCCchh---------hhhccccccCCceeecCCCeeehhH
Q 001511 734 APRILPL---------RVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 734 ~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
+....|. ++.+.|+...|.+.....+|.++|-
T Consensus 273 ~l~~~p~GC~F~pRC~~a~~~c~~~~P~~~~~~~~~~~~c~ 313 (316)
T COG0444 273 SLLNPPKGCRFHPRCPYAMERCREEEPPLRELGGGHKVRCW 313 (316)
T ss_pred cccCCCCCCccccccchhHhhcccCCCCccccCCCeeeecc
Confidence 8887663 5888999998886655667999885
No 53
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=416.06 Aligned_cols=224 Identities=26% Similarity=0.351 Sum_probs=192.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
.|+++||+++|. +..+|+|||++|++||+++|+||||||||||+|+|.||.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 589999999994 6789999999999999999999999999999999999999999999999953 24789999
Q ss_pred EEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|||+..+|. .|+.||+.++.. ..+..+.+.++++.++|+++||.+..+.||. +|||||||||||||||+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--------qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--------ccCcHHHHHHHHHHHHc
Confidence 9999999875 699999998643 2233333556778889999999999999995 99999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCccccccccc
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~~~~~~~ 670 (1064)
.+|+++++|||||||||+...++++.+ .+.|.|.|+|||++..++ .+|||+.||++-
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~------------------- 213 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK------------------- 213 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCE-------------------
Confidence 999999999999999999999877655 456999999999999997 589999999641
Q ss_pred ccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 671 NMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 671 ~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
++|.++.++.|.+ |.||+|+.-++.
T Consensus 214 -------------------iie~g~p~~~f~~-p~~~R~~~FL~~ 238 (240)
T COG1126 214 -------------------IIEEGPPEEFFDN-PKSERTRQFLSK 238 (240)
T ss_pred -------------------EEEecCHHHHhcC-CCCHHHHHHHHh
Confidence 2223444566665 799999988764
No 54
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=417.91 Aligned_cols=228 Identities=32% Similarity=0.448 Sum_probs=198.4
Q ss_pred cEEEEeeEEEcCCCC---eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccc
Q 001511 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~---~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~ 513 (1064)
.++++|+++.|+.++ ++|+||||+|.+||++||+||||||||||.|+|+|+.+|++|+|.++|.. ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 689999999997655 69999999999999999999999999999999999999999999999954 23578
Q ss_pred cEEEEecCCC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 514 EIFYVPQRPY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 514 ~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.|.+|||||+ .|..||++.|..|...++.. ...+++.++|+.+|+. .+++++|+ +|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~--------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPH--------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCch--------hcChhHHHHHHH
Confidence 9999999997 35679999999887654322 2445699999999996 78999996 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecCCCccc
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKRDGSSV 664 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1064)
||||..+|++||||||||+||+..+.++++++. +.|.|+|+||||++.+.+ ||||.+|+++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G-------------- 218 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG-------------- 218 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC--------------
Confidence 999999999999999999999999999888764 358999999999999875 8888888764
Q ss_pred ccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCC
Q 001511 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1064)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1064)
+++|..++.+++.+ |.||||+.|++++|...
T Consensus 219 ------------------------~ivE~~~~~~l~~~-~~h~ytr~Ll~a~~~~~ 249 (252)
T COG1124 219 ------------------------QIVEIGPTEELLSH-PSHPYTRELLEAVPSID 249 (252)
T ss_pred ------------------------eEEEeechhhhhcC-CccHHHHHHHHhhhccc
Confidence 34555667777776 89999999999998754
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-49 Score=426.40 Aligned_cols=227 Identities=26% Similarity=0.356 Sum_probs=202.2
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cc
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1064)
+|+++||++.|+.+ ..+|+||||+|++||++||+|.||+|||||+|++.+|..|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 479999999999999999999999999999999999999999999999965 24
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.|++|||+||++.++. .||.+|++||....+..+.+..+++.++|+.+||++..++||. +|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~--------qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA--------QLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch--------hcCcchhhHHHH
Confidence 6899999999998876 7999999999887665555667889999999999999999994 999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCccc
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSV 664 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1064)
||||+.+|+||++|||||||||++.+.|+++|++ .|.|+++|||.++.++ .|||+.+|+++
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G-------------- 218 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG-------------- 218 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC--------------
Confidence 9999999999999999999999999999988764 5999999999999997 59999988853
Q ss_pred ccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCC
Q 001511 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1064)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1064)
+++|.+...++|.+ |+|+-|++++...-
T Consensus 219 ------------------------~lvE~G~v~~vF~~-Pk~~~t~~fi~~~~ 246 (339)
T COG1135 219 ------------------------RLVEEGTVSEVFAN-PKHAITQEFIGETL 246 (339)
T ss_pred ------------------------EEEEeccHHHhhcC-cchHHHHHHHHhhc
Confidence 34555667788875 79999999998554
No 56
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-43 Score=447.69 Aligned_cols=496 Identities=18% Similarity=0.224 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 113 IVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLIS-ENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFEN 190 (1064)
Q Consensus 113 l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~-~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~ 190 (1064)
+..+...+....|.+.+.+++.+.+...+.....+. ..++++ ++-+++..-..|....++.++|..+. ...|+|
T Consensus 209 ~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~----~~IY~K 284 (1381)
T KOG0054|consen 209 FLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI----SAIYRK 284 (1381)
T ss_pred HHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH----HHHHHh
Confidence 333334445577888888888776553222111111 111111 11222333445667778888777664 566888
Q ss_pred hhccccccc-cCCCCChhHHHHchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001511 191 MAYYKISHV-DGRITHPEQRLASDVPRFCSELSEL---VQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMR 266 (1064)
Q Consensus 191 ~~~~~i~~~-~~~~~n~~qRit~Di~~~~~~i~~l---~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~ 266 (1064)
.+++.-... +...|+..+=++.|++++.+....+ ....+..++ ++.+.|..+.+....-.+++++++|+..+
T Consensus 285 ~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~-~l~lLy~~LG~sa~~G~~~~il~~p~n~~--- 360 (1381)
T KOG0054|consen 285 ALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIIL-ALYLLYGLLGPSALAGVAVMVLLIPLNSF--- 360 (1381)
T ss_pred hhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHH---
Confidence 888876554 3346788899999999987654432 222222222 11112222111111111122223333333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 267 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 346 (1064)
Q Consensus 267 ~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1064)
+++...+...+..+...+--....|+.++++.||+|+=|+.+.+++++.=++-.+..++ .....++. .++.....
T Consensus 361 -~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk---~~~~~~~~-~~~~~~~p 435 (1381)
T KOG0054|consen 361 -LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRK---SAYLSALN-SFLNFFSP 435 (1381)
T ss_pred -HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHH
Confidence 34444444333333322223467888999999999998887764443322211111111 11111111 11110111
Q ss_pred HHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC
Q 001511 347 ATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 426 (1064)
Q Consensus 347 ~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~ 426 (1064)
.++.++.+..+.. ...+..+.. ..+..+ +++..+-.|+..+......+.++..+.+|+.+++..++.....
T Consensus 436 -~lv~~~tF~~~v~--~~~~~lt~~--~aF~sl----alfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 436 -VLVSVVTFVVFVL--LLGNLLTAS--TAFTSL----ALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred -HHHHHHHHHHHhh--ccCccccHh--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 1111111111110 111112221 122222 2333344566677778888889999999999998755432211
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEe
Q 001511 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1064)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i 504 (1064)
. . . .........++++|.++.+.+ ..+.|+||||+|++|+.+||||+.|||||||+.+|+|..+..+|++.+
T Consensus 507 ~-~--~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 507 V-E--R---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred c-c--c---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 1 0 0 011122457999999998754 345999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcCh
Q 001511 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 581 (1064)
Q Consensus 505 ~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSG 581 (1064)
+| .++||||.||++++||||||.||.+ .++++-.++++.++|...++-+|.+..+ ++|.+|||
T Consensus 581 ~g-------siaYv~Q~pWI~ngTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 581 NG-------SVAYVPQQPWIQNGTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred cC-------eEEEeccccHhhCCcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 98 5999999999999999999999965 4677888999999999999999986554 47889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||++|||+++|+||++||+|.||+|..+.+++++..-. .++|+|++||.++.++.+|.|++|++|
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999998875433 389999999999999999999999984
No 57
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.7e-46 Score=423.38 Aligned_cols=275 Identities=24% Similarity=0.325 Sum_probs=216.6
Q ss_pred CCcEEEEeeEEEcCC------------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-
Q 001511 442 ANYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~------------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~- 508 (1064)
...|+++||++.|+. ..++++||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999963 2469999999999999999999999999999999999999999999999964
Q ss_pred c--------cccccEEEEecCCC--CC-cccHHHHhcCCCCCCC--cCCCCCHHHHHHHHHhcCC-hhHHhcCCCCcccC
Q 001511 509 S--------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEIN 574 (1064)
Q Consensus 509 ~--------~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~L-~~~~~~~p~~~~~~ 574 (1064)
. .+|++|+||||+|. ++ ..|+.|||.++...+. .......+++.++++.+++ ++..+++|+
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~----- 160 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH----- 160 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc-----
Confidence 1 24678999999983 44 5799999987532211 1111234567789999999 467788885
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|||||||||+|||||+.+|++||+||||++||+.++.++.+.+++ .|.|+|+||||++.+. .||+|++|.+
T Consensus 161 ---~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 161 ---EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999998887753 3899999999999986 5999999975
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC----CCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~ 725 (1064)
+ .. +|.+..++++.+ |.||||+.|+++.|..++. ...
T Consensus 238 G--~i------------------------------------ve~g~~~~i~~~-~~~py~~~l~~~~~~~~~~~~~~~~~ 278 (331)
T PRK15079 238 G--HA------------------------------------VELGTYDEVYHN-PLHPYTKALMSAVPIPDPDLERNKTI 278 (331)
T ss_pred C--EE------------------------------------EEEcCHHHHHcC-CCCHHHHHHHhhCCCccccccccccc
Confidence 3 12 222334455554 7999999999999864321 112
Q ss_pred CCCCCCCCCCCCch------h---hhhccccccCCceeecCCCeeehh
Q 001511 726 PVFPQLKSAPRILP------L---RVADMFKVLVPTVFDKQGAQLLAV 764 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p------~---Ra~~lCri~iP~l~s~e~g~lv~c 764 (1064)
..++|.+|.+.+.| + .+.+.|+...|++.. ..+|.++|
T Consensus 279 ~~~~g~~p~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~-~~~~~~~C 325 (331)
T PRK15079 279 QLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEG-SFRHAVSC 325 (331)
T ss_pred ccCCCCCCCCcCCCCCCCCCCCCcchhhhhccCCCCcEe-CCCeEEEE
Confidence 23466555544433 2 478899998898865 66788888
No 58
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-46 Score=421.20 Aligned_cols=275 Identities=23% Similarity=0.306 Sum_probs=216.9
Q ss_pred CcEEEEeeEEEcCC---------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----
Q 001511 443 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~---------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----- 508 (1064)
..|+++||++.|+. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999963 2479999999999999999999999999999999999999999999999964
Q ss_pred ----ccccccEEEEecCCC--C-CcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCc
Q 001511 509 ----SDLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 509 ----~~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~L 579 (1064)
..+|++|+||||+|. + +..|+.+|+.++...+ ........+++.++++.+|+. +..+++|+ +|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~--------~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH--------MF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc--------cC
Confidence 124678999999994 3 3469999987543221 111112346788999999996 57788885 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
|||||||++|||||+.+|++||+||||++||+.++.++++++++ .|.|+|+||||++.+. .||+|++|.++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G---- 231 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG---- 231 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC----
Confidence 99999999999999999999999999999999999998887754 4899999999999986 69999999753
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC--CCCCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN--VPLPVFPQLK 732 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~--~~~~~~~~~~ 732 (1064)
+++|.++.++++.+ |.||||+.|+++.|..++. .....++|.+
T Consensus 232 ----------------------------------~ive~g~~~~~~~~-p~hpyt~~ll~~~p~~~~~~~~~~~~~~~~~ 276 (327)
T PRK11308 232 ----------------------------------RCVEKGTKEQIFNN-PRHPYTQALLSATPRLNPDDRRERIKLTGEL 276 (327)
T ss_pred ----------------------------------EEEEECCHHHHhcC-CCCHHHHHHHHhCCCcCcccccccccCCCCC
Confidence 12233444555554 7999999999999865321 1112356655
Q ss_pred CCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 733 SAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 733 ~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
|.+.+.| +.+.+.|+...|++... ++|.++|-
T Consensus 277 ~~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~~-~~~~~~c~ 317 (327)
T PRK11308 277 PSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDY-DGRLVACF 317 (327)
T ss_pred CCCcCCCCCCCCCCCCcchhhccccCCCCcEec-CCeEEEee
Confidence 5544433 14788999888987766 57888883
No 59
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-46 Score=394.24 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=177.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p 522 (1064)
.+++++|++.|.+ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.. ..-..+++||||++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5899999999964 789999999999999999999999999999999999999999999999965 34457899999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|+.||+.++.........+..+++.++++.+||.++.+++|+ +|||||||||||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--------qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH--------QLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc--------ccChHHHHHHHHHHHHhcCCCEEE
Confidence 8765 6999999999876443334456789999999999999999996 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 602 LDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
||||++|||..|+..+++.+ ++.++|+++||||++.+- -+|||++|.++.
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 99999999999998877654 456999999999998764 699999999864
No 60
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=416.07 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=212.6
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.|+++||++.|+.+ ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999653 469999999999999999999999999999999999998 489999999965 11
Q ss_pred ----ccccEEEEecCCC---CCcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCc
Q 001511 511 ----LNKEIFYVPQRPY---TAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 511 ----lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~L 579 (1064)
.++.|+||||+|. .+..|+.+++..+...+ ........+++.++++.+|+.+ ..+++|+ +|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~--------~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH--------QL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch--------hC
Confidence 1247999999995 23458887776543211 1111234567889999999964 5677774 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~g~~~ 654 (1064)
||||||||+|||||+.+|++||+||||++||+.++.++++.+++ .|.|+|+||||++.+ +.+|+|++|.++. .
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~--i 232 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQ--V 232 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--E
Confidence 99999999999999999999999999999999999998887654 489999999999988 4799999998631 2
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC-CCCCCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN-VPLPVFPQLKS 733 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~-~~~~~~~~~~~ 733 (1064)
+|.+..++++. .|.||||++|+++.|...+. ..+..++|.+|
T Consensus 233 ------------------------------------ve~g~~~~~~~-~p~hpyt~~ll~~~~~~~~~~~~~~~~~g~~~ 275 (326)
T PRK11022 233 ------------------------------------VETGKAHDIFR-APRHPYTQALLRALPEFAQDKARLASLPGVVP 275 (326)
T ss_pred ------------------------------------EEECCHHHHhh-CCCChHHHHHHHhCccccccccccccCCCCCC
Confidence 22234445555 48999999999999875422 22334566655
Q ss_pred CCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 734 APRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 734 ~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
...+.| +.+.+.|+...|++...+ +|.++|-
T Consensus 276 ~~~~~~~gc~~~~rc~~~~~~c~~~~p~~~~~~-~~~~~c~ 315 (326)
T PRK11022 276 GKYDRPNGCLLNPRCPYATDRCRAEEPALNMLA-GRQSKCH 315 (326)
T ss_pred CCcCCCCCCCCCCCCcchhhccccCCCCcEeeC-CEEEEee
Confidence 544333 248889999989887664 7888883
No 61
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-46 Score=398.26 Aligned_cols=234 Identities=27% Similarity=0.423 Sum_probs=196.3
Q ss_pred CcEEEEeeEEEcCCC--------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccc
Q 001511 443 NYIEFSGVKVVTPTG--------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~--------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~ 513 (1064)
..++++|++++|+.+ ..+++||||+|++||+++|||+||||||||.|+|+||++|++|+|.++|.+ ..+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 368999999998643 279999999999999999999999999999999999999999999999964 1111
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.....+++.++|+.+|+. +++.++|+ +|||||+||++||||
T Consensus 82 ------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh--------elSGGQrQRi~IARA 123 (268)
T COG4608 82 ------------------------------KEERRERVLELLEKVGLPEEFLYRYPH--------ELSGGQRQRIGIARA 123 (268)
T ss_pred ------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc--------ccCchhhhhHHHHHH
Confidence 113456799999999996 58999997 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCccccccc
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKS 668 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~~~~~~ 668 (1064)
|+.+|+++++|||||+||...+.++.+++++ .|.|+++||||++.+++.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i--------------------------- 176 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI--------------------------- 176 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------------------------
Confidence 9999999999999999999999998887653 499999999999999863
Q ss_pred ccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCCCC---CCCCCCCCCCCCCchh-----
Q 001511 669 GINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVP---LPVFPQLKSAPRILPL----- 740 (1064)
Q Consensus 669 ~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~---~~~~~~~~~~~~~~p~----- 740 (1064)
+||++ +||.|+++|.+++++++.+ |.||||++|++++|..++..+ .....|..|++.++|.
T Consensus 177 ---------sdri~-VMy~G~iVE~g~~~~~~~~-p~HpYTk~Ll~a~p~~~p~~~~~~~~~~~ge~p~~~~~p~gC~f~ 245 (268)
T COG4608 177 ---------SDRIA-VMYLGKIVEIGPTEEVFSN-PLHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPINPPSGCRFH 245 (268)
T ss_pred ---------cccEE-EEecCceeEecCHHHHhhC-CCCHHHHHHHHhCCccchhhhhhhhhhhccCCCCCCcCCcCCccc
Confidence 24444 7778889999999999985 899999999999998665322 2234566777666552
Q ss_pred ----hhhccccccCCce
Q 001511 741 ----RVADMFKVLVPTV 753 (1064)
Q Consensus 741 ----Ra~~lCri~iP~l 753 (1064)
.+++.|+...|.+
T Consensus 246 ~RCp~a~~~c~~~~p~~ 262 (268)
T COG4608 246 PRCPYAMEICRKEEPEL 262 (268)
T ss_pred CCcchhhhhhcccCCch
Confidence 4788899998876
No 62
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.1e-45 Score=413.52 Aligned_cols=276 Identities=23% Similarity=0.301 Sum_probs=214.1
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC------c
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~------~ 509 (1064)
...++++||++.|+. ..++|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 357999999999953 247999999999999999999999999999999999999996 9999999964 1
Q ss_pred c---cc-ccEEEEecCCC--C-CcccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCC
Q 001511 510 D---LN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1064)
Q Consensus 510 ~---lr-~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~ 578 (1064)
+ +| +.|+||||+|. + +..|+.+|+.++...+. .......+++.++++.+++.+ ..+++|+ +
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~--------~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH--------E 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc--------c
Confidence 1 23 47999999984 3 44689888875432221 111122356788999999964 3466774 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
||||||||++|||||+.+|++||+||||++||+.++..+.+.+++ .|.|+|+||||++.+. .+|+|++|.++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G--- 238 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG--- 238 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC---
Confidence 999999999999999999999999999999999999998887653 3899999999999986 69999999753
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC-CCCCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN-VPLPVFPQLK 732 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~-~~~~~~~~~~ 732 (1064)
+++|.+..++++++ |.||||++|+++.|..++. ..+..++|.+
T Consensus 239 -----------------------------------~ive~g~~~~i~~~-p~~pyt~~l~~~~~~~~~~~~~~~~~~~~~ 282 (330)
T PRK09473 239 -----------------------------------RTMEYGNARDVFYQ-PSHPYSIGLLNAVPRLDAEGESLLTIPGNP 282 (330)
T ss_pred -----------------------------------EEEEECCHHHHHhC-CCCHHHHHHHHhCCCccccccccccCCCCC
Confidence 22233455566664 7999999999999864321 2233455655
Q ss_pred CCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 733 SAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 733 ~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
|.+...| +++.+.| ...|++...+++|.++|-
T Consensus 283 ~~~~~~~~gc~f~~rc~~~~~~c-~~~p~~~~~~~~~~v~c~ 323 (330)
T PRK09473 283 PNLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFGPGRLRACF 323 (330)
T ss_pred CCccCCCCCCCCCCCCchhhhhh-cCCCCceEcCCCeEEEee
Confidence 5444433 2478889 677888888788999884
No 63
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-45 Score=427.86 Aligned_cols=233 Identities=30% Similarity=0.441 Sum_probs=200.3
Q ss_pred CCCcEEEEeeEEEcCC------C----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--
Q 001511 441 EANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 508 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~------~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-- 508 (1064)
..+.++++||++.|.. + ..+++||||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3567899999999973 1 368999999999999999999999999999999999999999999999964
Q ss_pred ------ccccccEEEEecCCCC---CcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCC
Q 001511 509 ------SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGD 577 (1064)
Q Consensus 509 ------~~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~ 577 (1064)
.+.|+++.+|||||+. +..||+++|..+...+... .....+++.++++.++|.. +.+++|+
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~-------- 428 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH-------- 428 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch--------
Confidence 2356899999999973 5679999999887644322 1234457899999999975 8999996
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHh-cCEEEEEeCCCc
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAF-HDVVLSLDGEGE 652 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~ 652 (1064)
+||||||||+||||||+.+|++||+|||||+||+.++.++.+++++ .|.|+|+||||+..++. ||+|.+|++
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~--- 505 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD--- 505 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC---
Confidence 8999999999999999999999999999999999999998887653 59999999999999974 888887764
Q ss_pred eEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCC
Q 001511 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1064)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1064)
|+++|.++++++|.+ |.||||+.|++++|..+
T Consensus 506 -----------------------------------G~iVE~G~~~~v~~~-p~h~Ytr~L~~avp~~~ 537 (539)
T COG1123 506 -----------------------------------GRIVEEGPTEKVFEN-PQHPYTRKLLAAVPKPD 537 (539)
T ss_pred -----------------------------------CeEEEeCCHHHHhcC-CCChHHHHHHHhccccC
Confidence 456677777777775 89999999999999754
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=378.56 Aligned_cols=228 Identities=22% Similarity=0.260 Sum_probs=194.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc-----cEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-----G~I~i~g~~--------~ 509 (1064)
..++++||+++|. ++.+|+|||++|++++++|++||||||||||+|++.++.+..+ |+|.++|.+ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999994 6789999999999999999999999999999999999988764 999999975 2
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
++|++||+|||.|.-|..||+||++|+.+.++..++.-++.+++.|+.+.|++-. +++. ..+..||||||||++
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 5799999999999999999999999998776554445567788899999997543 3321 123479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCccccc
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~~~~ 666 (1064)
|||||+.+|++|+||||||||||.+..+|.+++.+ ..-|+|+|||++.-+...
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRv------------------------- 214 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV------------------------- 214 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHH-------------------------
Confidence 99999999999999999999999999988888765 378999999999866543
Q ss_pred ccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 667 KSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 667 ~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
+|..+ -+|.|+++|.++++++|.+ |.|-.|+.-+.
T Consensus 215 -----------SD~ta-Ff~~G~LvE~g~T~~iF~~-P~~~~TedYis 249 (253)
T COG1117 215 -----------SDYTA-FFYLGELVEFGPTDKIFTN-PKHKRTEDYIS 249 (253)
T ss_pred -----------hHhhh-hhcccEEEEEcCHHhhhcC-ccHHHHHHHhc
Confidence 24444 7888999999999999987 79998887654
No 65
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-44 Score=382.58 Aligned_cols=199 Identities=31% Similarity=0.430 Sum_probs=172.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccc-
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL- 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~l- 511 (1064)
++++||++.|..+ ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|.+ ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6789999988654 379999999999999999999999999999999999999999999999964 122
Q ss_pred cccEEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHh-cCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~-~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|++||||||+..+ +..|+.|||..|............+.+.++++.+|+.+... ++|. +|||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~--------eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS--------ELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch--------hcCHHHHHHHHH
Confidence 5789999999876 46799999997754332222134567788999999997776 7784 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||||+++|+++++||||++||.++.+.+++++++ .|+|+|+||||+..+..|||++.+.++.
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999999999888764 4899999999999999999999998764
No 66
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=408.13 Aligned_cols=273 Identities=18% Similarity=0.240 Sum_probs=210.2
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.|+++||++.|+. ...+++||||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999953 3479999999999999999999999999999999999986 589999999964 11
Q ss_pred c----cccEEEEecCCCC---CcccHHHHhcCCCCCC---Cc--CC-CCCHHHHHHHHHhcCChh---HHhcCCCCcccC
Q 001511 511 L----NKEIFYVPQRPYT---AVGTLRDQLIYPLTSD---QE--VE-PLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 574 (1064)
Q Consensus 511 l----r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~---~~--~~-~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~ 574 (1064)
+ ++.|+||||+|.. +..|+.+|+.++.... .. .. ....+++.++++.+||.+ ..+++|+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~----- 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY----- 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch-----
Confidence 1 3579999999963 3469999987532110 00 00 112457889999999974 4577774
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|||||||||+|||||+.+|++|||||||++||+.++.++.+.+++ .|.|+|+||||++.+. .+|+|++|++
T Consensus 158 ---~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 158 ---ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999998887764 4899999999999985 6999999976
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCC----CCCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH----NVPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~----~~~~ 725 (1064)
+. . +|.+..++.+. .|.||||++|+++.|..+. ..+.
T Consensus 235 G~--i------------------------------------ve~g~~~~i~~-~p~~~y~~~ll~~~~~~~~~~~~~~~~ 275 (330)
T PRK15093 235 GQ--T------------------------------------VETAPSKELVT-TPHHPYTQALIRAIPDFGSAMPHKSRL 275 (330)
T ss_pred CE--E------------------------------------EEECCHHHHHh-CCCCHHHHHHHHhCCcccccccccccc
Confidence 41 2 22233334455 4799999999999986432 1122
Q ss_pred CCCCCCCCCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 726 PVFPQLKSAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
..++|.+|.+...+ +.+.+.|... |++... ++|.++|-
T Consensus 276 ~~~~~~~~~~~~~~~~c~f~~rc~~~~~~c~~~-p~~~~~-~~~~~~c~ 322 (330)
T PRK15093 276 NTLPGAIPLLEHLPIGCRLGPRCPYAQRECIET-PRLTGA-KNHLYACH 322 (330)
T ss_pred ccCCCCCCCcccCCCCCCCCCCCcchhhhhhcC-CCCEec-CCeEEEee
Confidence 34566655544433 2478899865 887666 47888884
No 67
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-45 Score=381.40 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=176.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+|+||++.|. ++.+++|+||+|++||++.++|||||||||++|+|.||++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 479999999995 7789999999999999999999999999999999999999999999999975 368999999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|-|..-+| +.||.|||+.-....+..++..++++.|+++.+||+ ++.+|||+ +|||||||||.+||||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~--------eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH--------ELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch--------hcCcchhhHHHHHHHHh
Confidence 99998876 579999999754433333445667899999999996 69999996 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++++|||++||||.++.++++.+. +.|+|+|+||||+..+ +.+|||.+|+++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 9999999999999999999998887654 4599999999999875 679999999864
No 68
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-44 Score=363.91 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=180.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~ 514 (1064)
+|+|+||++.|++++++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 48999999999999889999999999999999999999999999999999999999999999976 136899
Q ss_pred EEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||+||||.-+ ...|+.||++++....+..+.+..+++.++|+.+||.+..+.+|. +||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--------~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS--------QLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc--------ccCchHHHHHHHHHHH
Confidence 9999999865 567999999999876665555667889999999999999999994 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhc-CEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~-D~Il~l~~~ 650 (1064)
+.+|++||.||||.+|||+...++++++.+ .|+||++.|||.+++... .+++.++++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 999999999999999999999999888765 599999999999999754 567777653
No 69
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-43 Score=411.97 Aligned_cols=233 Identities=30% Similarity=0.379 Sum_probs=197.9
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC----ccEEEeCCCC------c
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~----~G~I~i~g~~------~ 509 (1064)
+.++++|+++.|... .++++||||+|++||++||||+|||||||+.++|+|+.++. +|+|.++|.+ .
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 479999999988642 36999999999999999999999999999999999999987 8999999975 1
Q ss_pred ---c-ccccEEEEecCCC---CCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhc--CCCCcccCCCCCc
Q 001511 510 ---D-LNKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDR--YPPEKEINWGDEL 579 (1064)
Q Consensus 510 ---~-lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~--~p~~~~~~~g~~L 579 (1064)
. ..+.|+||||+|. .+..||.++|......+... ..+..+++.++|+.+|+++-..+ ||| +|
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh--------eL 155 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QL 155 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc--------cc
Confidence 1 2378999999996 34579999998754443321 23456788999999999865554 997 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
|||||||+.||+||+++|++||+||||++||+.++.+|++++++ .|+++|+||||++.+. .||+|+||.+
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~----- 230 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK----- 230 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC-----
Confidence 99999999999999999999999999999999999999887754 5999999999999886 5899887764
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN 722 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~ 722 (1064)
|+++|.+++++++++ |+||||+.|+++.|...+.
T Consensus 231 ---------------------------------G~iVE~G~~~~i~~~-p~hpYT~~Ll~a~p~~~~~ 264 (539)
T COG1123 231 ---------------------------------GEIVETGPTEEILSN-PQHPYTRGLLAAVPRLGDE 264 (539)
T ss_pred ---------------------------------CEEEEecCHHHHHhc-cCCcccHHHHhhCCCcccc
Confidence 456777888899886 7999999999999986443
No 70
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-43 Score=367.47 Aligned_cols=200 Identities=28% Similarity=0.353 Sum_probs=174.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 512 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr 512 (1064)
...|++++|++.| +++.+++||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4579999999999 56889999999999999999999999999999999999999999999999976 2468
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+++|++||.--+|. .||.||+.||...+...+ ...++-+..-|+.|||..- .+.+| .+|||||++|+||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P--------sELSGGM~KRvaL 156 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVAL 156 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc--------hhhcchHHHHHHH
Confidence 99999999999986 599999999987653322 2233445567899999866 88999 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++.||+++++|||||||||.+...+-++++ +.|.|+|+||||+.++. .||+++++.++
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~g 222 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADG 222 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCC
Confidence 999999999999999999999998877665544 35999999999999875 68999999865
No 71
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.6e-43 Score=377.91 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.++|.+ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 489999999996 7899999999999999999999999999999999999999999999999976 356789999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|||++..+ ..||+|-+.++...+.. ..+.+.+.+.++++.+|+.++.++.- .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 99998654 56999999988654311 12234446888999999999999865 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|++|+||||||+||...+.++++++++ .|+|+|++.||++.+ ++||++++|+++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999887754 489999999999976 689999999975
No 72
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-43 Score=384.75 Aligned_cols=229 Identities=28% Similarity=0.379 Sum_probs=199.3
Q ss_pred CCcEEEEeeEEEcCCC----------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---
Q 001511 442 ANYIEFSGVKVVTPTG----------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~----------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1064)
...++.+||.+.|+-. ..++++|||++++||++||||+||||||||.++|++|++++ |+|.++|.+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4578999999988631 25999999999999999999999999999999999999877 999999975
Q ss_pred ------ccccccEEEEecCCC---CCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCC
Q 001511 509 ------SDLNKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWG 576 (1064)
Q Consensus 509 ------~~lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g 576 (1064)
.-+|+++.+|||||| .|..||.+.|..|...++. ...+.++++.++|+.+|++ .-.++||+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh------- 425 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH------- 425 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-------
Confidence 236899999999998 3567999999998776542 2335678899999999997 56899997
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
++|||||||+|||||++.+|++++||||||+||...+.++.+++++ .|.++++||||+..++ .||+++||.++
T Consensus 426 -EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G- 503 (534)
T COG4172 426 -EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG- 503 (534)
T ss_pred -ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC-
Confidence 8999999999999999999999999999999999999998887754 5999999999999997 59999999753
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCC
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~ 718 (1064)
++||.++++++|.+ |+|+||++|+++.+.
T Consensus 504 -------------------------------------kiVE~G~~~~if~~-P~~~YT~~L~~aa~~ 532 (534)
T COG4172 504 -------------------------------------KIVEQGPTEAVFAN-PQHEYTRALLAAAFD 532 (534)
T ss_pred -------------------------------------EEeeeCCHHHHhcC-CCcHHHHHHHHhhcc
Confidence 45667888888886 799999999998774
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=372.38 Aligned_cols=199 Identities=28% Similarity=0.401 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccc--cccEEEEe
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 519 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~l--r~~i~~v~ 519 (1064)
..|+++|++++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 469999999999755 79999999999999999999999999999999999999999999999865 222 36899999
Q ss_pred cCC---CCCcccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 520 QRP---YTAVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 520 Q~p---~l~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|.. +-|+.||+|-+..+..... ...+.+.+++.++|+++|+.++.++.- .+|||||+|||.||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 965 4577899999988743321 112234688999999999999998865 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|++|+|||||+|+|+.++..+++++++ .|+||++||||++.+. ++|+|+.++++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 9999999999999999999999998887754 4999999999999875 79999999874
No 74
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.3e-43 Score=396.84 Aligned_cols=199 Identities=27% Similarity=0.344 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------c---cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~l 511 (1064)
+|+++||++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999963 2479999999999999999999999999999999999999999999999964 1 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
|++|+|+||++.++. .|+.||+.++...........++++.++++.+|+.++.+++|. +|||||||||+||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~--------~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS--------NLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 678999999998874 7999999987542221112234678899999999999999884 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|++||||||||+||+.++..+++.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887765 3899999999999985 69999999864
No 75
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=390.48 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=175.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v 518 (1064)
..++++||++.|. +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+ .--++.||+|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4699999999996 7899999999999999999999999999999999999999999999999976 2236799999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
||+.-+| ..||+|||+||+....... .+.++++.++++.++++++.+++|+ +|||||||||||||||+.+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--------qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH--------QLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--------hhChHHHHHHHHHHHhhcC
Confidence 9999876 4799999999987332222 2345689999999999999999996 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|+||||.|+||...+.+++..+ ++.|.|.|+||||-+.+ ..+|||.+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 9999999999999998887766544 45699999999998865 579999999875
No 76
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-42 Score=385.55 Aligned_cols=197 Identities=26% Similarity=0.391 Sum_probs=175.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cc---ccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD---LNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~---lr~~i~~v~ 519 (1064)
.|+++||++.|.+.. +++|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|.+ .+ ..++|+|||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996433 9999999999999999999999999999999999999999999999965 22 357899999
Q ss_pred cCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|+.-++ .+||+|||+||....+..+.+.++++.++++.++++++++++|. +|||||||||||||||+++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~--------~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL--------QLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc--------cCChhhHHHHHHHHHHhcCCC
Confidence 999775 57999999999887665555678899999999999999999994 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 599 FAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
+++||||+|+||...+..+...+ ++.|.|+|.||||...+ ..+|+|.+|++
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 99999999999998877765443 44699999999998776 47999999994
No 77
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=360.76 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=176.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~ 514 (1064)
+|+++||++.||+++.+|+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999964 356889
Q ss_pred EEEEecCCCCC-cccHHHHhcCCCCCCCc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTA-VGTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
|||+||++.+. ..|+.+|+..+...+.. ..+++..++.++|+++|+.+..-... ++|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 99999999875 46999999877544321 22345567888999999988765543 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+|||||+.+|++++.|||+++|||.+.+++++.+++ .|.|+|+.-|++++++ +||||+-|+++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 99999999999999999999999999999999988864 4999999999999885 89999999864
No 78
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=369.56 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=181.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|++++|+++.++|+|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.+ ..+|+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 368999999999877789999999999999999999999999999999999999999999999964 2468999
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
|||||+| .++..||.|.++|+..+.+...++.++++.++++.+|+.++.++.|+ +||||||||||||.+|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~--------~LSGGqkqRvaIA~vL 153 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF--------NLSGGQKQRVAIAGVL 153 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc--------ccCCcceeeHHhhHHH
Confidence 9999999 57889999999999876655444466789999999999999999886 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|++||||||||+||+...+.+.+.+++ . |+|+|++|||++.+. .||++++|+++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999887765 2 689999999999886 59999999975
No 79
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=415.70 Aligned_cols=271 Identities=24% Similarity=0.290 Sum_probs=212.6
Q ss_pred CcEEEEeeEEEcCC----------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----
Q 001511 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---- 508 (1064)
+.++++||++.|+. +.++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 57999999999962 2479999999999999999999999999999999999999999999999953
Q ss_pred -----ccccccEEEEecCCC--C-CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCC
Q 001511 509 -----SDLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDE 578 (1064)
Q Consensus 509 -----~~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~ 578 (1064)
..++++|+||||+|+ + +..|+.+|+.++...... ......+++.++++.+|+. +..+++|. +
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--------~ 463 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH--------E 463 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc--------c
Confidence 124568999999984 4 456999999865321111 0112345688899999995 67788884 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|+|+||||++.+. .||+|++|+++.
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~-- 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ-- 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--
Confidence 999999999999999999999999999999999999999888743 4899999999999885 699999998642
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC---CCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN---VPLPVFPQ 730 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~---~~~~~~~~ 730 (1064)
.+ +.+..++++. .|.||||++|+++.|..++. .....++|
T Consensus 542 iv------------------------------------~~g~~~~i~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 584 (623)
T PRK10261 542 IV------------------------------------EIGPRRAVFE-NPQHPYTRKLMAAVPVADPSRQRPQRVLLSD 584 (623)
T ss_pred EE------------------------------------EecCHHHHhc-CCCCHHHHHHHhhCCCCCcccccccccccCC
Confidence 11 1233334444 47999999999999975542 12234577
Q ss_pred CCCCCCCchhhhhccccccCCceeecCCCeeehhH
Q 001511 731 LKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 731 ~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
.+|++...... +...|++.+.+.+|.+.|-
T Consensus 585 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 614 (623)
T PRK10261 585 DLPSNIHLRGE-----EVAAVSLQCVGPGHYVAQP 614 (623)
T ss_pred CCCCCcCCCCC-----CCCCCcceecCCCcEEeec
Confidence 77766433221 4567888888888888543
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=386.41 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|++++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999555789999999999999999999999999999999999999999999999964 12346899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.+|. .|++|||.|+............+++.++++.++++++.+++|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR--------ELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 6999999998643221112234678899999999999999985 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||||+||+.+++.+.+.+++ .|.|+|+|||+++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G 211 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999988776653 489999999999876 579999999864
No 81
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.6e-41 Score=360.66 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=171.0
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccc
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~ 513 (1064)
+++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . .+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 37899999999654 479999999999999999999999999999999999999999999999964 1 1457
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.++|+||++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~lara 152 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM--------QLSGGEQQRVAIARA 152 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHH
Confidence 8999999998775 6999999875322111111234678889999999988888774 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999887764 3899999999999886 69999999864
No 82
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-41 Score=372.17 Aligned_cols=231 Identities=26% Similarity=0.385 Sum_probs=195.9
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-----
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG----- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~----- 508 (1064)
.+.++++|+++.|.. ...++++|||+|++||++||||+||||||-..+.++||++. -+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 357899999998852 35799999999999999999999999999999999999975 47999999976
Q ss_pred -cc---cc-ccEEEEecCCCC---CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCC
Q 001511 509 -SD---LN-KEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWG 576 (1064)
Q Consensus 509 -~~---lr-~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~~g 576 (1064)
.. +| .+|+++||+|.. |..||..+|..+...+.. ......+++.++|+.+|+. ..++.|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH------- 156 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH------- 156 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc-------
Confidence 12 33 589999999974 446999999877654432 3345678899999999996 45788997
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+|||||||||.||.||+.+|++||.||||.|||+..+.+|++++++ .|+.+++||||++.++ .+|+|.||..
T Consensus 157 -eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~-- 233 (534)
T COG4172 157 -ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH-- 233 (534)
T ss_pred -ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec--
Confidence 8999999999999999999999999999999999999999888764 5999999999999986 6899988875
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCC
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA 719 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~ 719 (1064)
|+++|.+.+++.|.+ |+||||+.|+++.|.-
T Consensus 234 ------------------------------------G~ivE~~~t~~lF~~-PqHpYTr~Ll~aeP~g 264 (534)
T COG4172 234 ------------------------------------GEIVETGTTETLFAA-PQHPYTRKLLAAEPSG 264 (534)
T ss_pred ------------------------------------cEEeecCcHHHHhhC-CCChHHHHHHhcCCCC
Confidence 345566777777775 8999999999998863
No 83
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-41 Score=361.79 Aligned_cols=198 Identities=28% Similarity=0.423 Sum_probs=173.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C-cc---ccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G-SD---LNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~-~~---lr~~i~ 516 (1064)
+|+++|+++.|+ ..++++|||++|+.||.+|+.||||||||||+|+|+||..|++|+|.++|. | .. -.++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 478888988874 567999999999999999999999999999999999999999999999997 5 11 237899
Q ss_pred EEecCCCCC-cccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~-~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||||+.-+| ..||.+||+|+....... +...+.++.++|+.++|+.+.++||. +||||||||||+||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--------QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA--------QLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch--------hcChHHHHHHHHHHHh
Confidence 999999876 579999999998644221 23456789999999999999999995 9999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|++|+||||+++||....+.+.+.|+ +.|.|+++||||.+.+ +.+|+|++|+++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G 214 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCC
Confidence 99999999999999999988887766554 4599999999999876 579999999876
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-41 Score=381.47 Aligned_cols=200 Identities=26% Similarity=0.383 Sum_probs=174.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
.+.|+++||++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123578999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.||+.|+...........++++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~--------~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD--------QISGGQQQRVALARALILK 154 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHcC
Confidence 999998875 6999999998643222122345678899999999999999884 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|||||||+||+.+++++.+.+++ .|+|+|+||||++.+ ..+|+|++|+++
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998876653 489999999999987 579999999975
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-40 Score=357.01 Aligned_cols=198 Identities=30% Similarity=0.440 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cc---------c
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD---------L 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~---------l 511 (1064)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999653 679999999999999999999999999999999999999999999999964 11 2
Q ss_pred cccEEEEecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++.. |++||+.++...........++++.++++.+|+++..++.|. +||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS--------ELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh--------hcCHHHHHHHHHH
Confidence 4679999999988765 999999875432211111234567889999999988887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..||++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 999999999999999999999999998887754 389999999999988899999999864
No 86
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-40 Score=350.15 Aligned_cols=193 Identities=30% Similarity=0.404 Sum_probs=168.1
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEecCC
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP 522 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~Q~p 522 (1064)
+++||++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 367899999643679999999999999999999999999999999999999999999999965 23456899999998
Q ss_pred --CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 523 --YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 523 --~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
.++..|++||+.++..... ...+++.++++.+++.++.++.|. +||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPL--------SLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCch--------hCCHHHHHHHHHHHHHHhCCCEE
Confidence 3567899999987643211 234578899999999988888774 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999888764 4899999999999886 69999999864
No 87
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-40 Score=353.05 Aligned_cols=197 Identities=27% Similarity=0.345 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q 520 (1064)
++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 579999999999999999999999999999999999999999999999965 345678999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH--------QLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998776 6999999875322111111234567889999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
+||||||++||+.++..+.+.+++ .|+|+|+|||+++.+ ..||++++|++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887754 389999999999976 57999999985
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-40 Score=365.36 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=172.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 68999999999755679999999999999999999999999999999999999999999999964 134578999
Q ss_pred EecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||+| .++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY--------HLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 99998 56778999999876432111111234567889999999988888884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|++|||||||++||+.++.++.+.+++ .|.|+|++||+++.+ +.||+|++|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888754 389999999999987 579999999865
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.7e-40 Score=352.16 Aligned_cols=199 Identities=30% Similarity=0.430 Sum_probs=170.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999645689999999999999999999999999999999999999999999999964 1 24578
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||+|.++. .|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al 152 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE--------QLSGGEQQRVAIARAI 152 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHHH
Confidence 999999998775 6999999875321111111234577889999999988777773 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 999999999999999999999999888765 4899999999999886 58999999864
No 90
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-40 Score=357.32 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~i 515 (1064)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 1246789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++.... ........+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA--------ELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHH
Confidence 99999998876 49999998753211 11111224567789999999888877763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999998887764 3899999999999875 69999999864
No 91
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.8e-40 Score=378.26 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=173.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|+ +..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 4679999999999999999999999999999999999999999999999964 12357899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.+|. .|++||+.|+............+++.++++.++++++.++.|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~--------~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG--------QLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 7999999997543221112235678899999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||||+||+.+++++.+.+++ .|.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877654 489999999999986 579999999975
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-40 Score=352.11 Aligned_cols=197 Identities=30% Similarity=0.434 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999995 4679999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH--------ELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998765 6999999875322111111234567889999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887764 389999999999976 469999999864
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-40 Score=356.80 Aligned_cols=198 Identities=27% Similarity=0.387 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 679999999999999999999999999999999999999999999999964 12246799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+|.++. .|+.||+.++...... ......+++.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA--------QLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHh
Confidence 9998775 6999999876432111 011123467788999999888887763 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887754 389999999999976 469999999864
No 94
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=376.33 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=171.1
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~l 511 (1064)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999962 3579999999999999999999999999999999999999999999999964 1 13
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+++|+||||++.++. .|++||+.++............+++.++++.+|+.++.++.|. +||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA--------QLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 678999999998775 6999999876432211111234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+++|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999887764 3899999999999875 59999999864
No 95
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-40 Score=327.27 Aligned_cols=200 Identities=31% Similarity=0.420 Sum_probs=176.2
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cc
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1064)
..|+++++++.-+.+ ..+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|.+.|++ ..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 368888888865433 479999999999999999999999999999999999999999999999975 12
Q ss_pred c-cccEEEEecCCC-CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+ .+++|||||... +++.|-.||+..|....++......+...+.|+++||.+.+..||. +||||||||||
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--------qLSGGEQQRVA 156 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA--------QLSGGEQQRVA 156 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc--------ccCchHHHHHH
Confidence 3 378999999986 4788999999999876554444455678899999999999999995 99999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||...|++|+.||||.+||.++-+++.+++ ++.|.|.++||||+.+...|||++.|..+
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G 222 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSG 222 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecc
Confidence 999999999999999999999999999887765 45699999999999999999999999864
No 96
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.7e-40 Score=378.47 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=173.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
.+.|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 12 ~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 12 SPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123568999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.|||.|+....+.......+++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~--------~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH--------QLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998875 5999999997643221111224578889999999999999984 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|||||||+||+.+++.+.+.+++ .|.|+|+||||+..+ ..+|+|++|+++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998877654 489999999999986 579999999874
No 97
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=375.62 Aligned_cols=198 Identities=26% Similarity=0.401 Sum_probs=171.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999965 12346899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|++.++. .|+.||+.++.... .......++++.++++.++++++.+++|. +|||||||||+|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA--------QLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHh
Confidence 9998875 69999999875421 11111234678899999999999999884 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|+||||++.+ ..||+|++|+++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998877654 389999999999986 469999999864
No 98
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.2e-40 Score=350.85 Aligned_cols=198 Identities=26% Similarity=0.341 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~i 515 (1064)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4689999999655679999999999999999999999999999999999999999999999864 1 245689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|++||+.++...........++++.++++.+++++..++.|. +||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA--------ELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hcCHHHHHHHHHHHHHH
Confidence 99999998776 5999999875322111111234567889999999988887773 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999887764 4899999999999886 58999999864
No 99
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-39 Score=361.00 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=177.5
Q ss_pred cEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.|+++||++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+ .++|+.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 4899999999974 4679999999999999999999999999999999999998 78999999965 24678999
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
||||+|.+|.+|+++|+..... ..++++.++++.+|+.++.+++|.+..+ +.|..||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~-------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGK-------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhccC-------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999963211 3467889999999999999999865333 36788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+...+.+.+++ .++|+|+||||++.+..||+|++|+++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999998875 389999999999999899999999864
No 100
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.1e-40 Score=350.38 Aligned_cols=197 Identities=29% Similarity=0.416 Sum_probs=166.4
Q ss_pred EEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 446 EFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 446 ~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
+++||++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 579999999999999999999999999999999999999999999999964 1345789999
Q ss_pred ecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 519 PQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 519 ~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
||++. ++..|++||+.++...........++++.++++.+++.+..++.| .+||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 99983 567899999987532111111112346778999999988888776 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. ||+|++|+++
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999887754 37899999999998865 9999999864
No 101
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8.6e-40 Score=349.26 Aligned_cols=195 Identities=33% Similarity=0.463 Sum_probs=166.8
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCC
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l 524 (1064)
+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++.+
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3678999985 4679999999999999999999999999999999999999999999999975 2456789999999875
Q ss_pred ---CcccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 525 ---AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 525 ---~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+..|++||+.++..... .......+++.++++.++++++.++.+. +||||||||++|||||+.+|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG--------ELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHHcCC
Confidence 45799999987643211 0111234567889999999988887763 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|++
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 99999999999999999998887764 4799999999999875 6999999975
No 102
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=370.54 Aligned_cols=206 Identities=23% Similarity=0.226 Sum_probs=169.5
Q ss_pred CCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC------
Q 001511 441 EANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG------ 508 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~------ 508 (1064)
..+.|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3568999999999964 4579999999999999999999999999999999999996 579999999975
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCC-CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~-~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.++|+.++||||+|+++++|++||+.++...+..... ..++.+.++++.+++.+.++.. ....+.+|||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~----~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDD----LDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhh----hhCCcccCCHHHHH
Confidence 1357889999999999999999999975322111100 1122356788888875332211 11245689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|++||||++.+|+|+||||||+|||+.+...+.+.+++ .++|+|+|||+++++.. ||+|++|+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998888765 37999999999999875 9999999874
No 103
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=352.24 Aligned_cols=200 Identities=25% Similarity=0.351 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------c
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------D 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~ 510 (1064)
+.++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 468999999999743 479999999999999999999999999999999999999999999999964 1 1
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
. ++.++|+||++.++. .|++||+.++...........++++.++++.+|+.+..++.|. +||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgG~~qrl~ 155 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS--------ELSGGERQRVA 155 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHH
Confidence 2 257999999998775 5999999874321111111234568889999999888777663 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||++.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..+|++++|+++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G 221 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECC
Confidence 99999999999999999999999999998887754 389999999999999888999999864
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-39 Score=349.44 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c---cc
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D---LN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~---lr 512 (1064)
++++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . + ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 479999999999999999999999999999999999999999999999864 1 1 23
Q ss_pred -ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 -~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+.++|+||++.++. .|++||+.++............+++.++++.+|+++..++.|. +||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS--------ELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHH
Confidence 57999999998775 6999999874321111111124567789999999888887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G 217 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCC
Confidence 999999999999999999999999999887753 389999999999998889999999864
No 105
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=362.91 Aligned_cols=199 Identities=28% Similarity=0.359 Sum_probs=172.2
Q ss_pred cEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 444 YIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.++++||++.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 6899999999964 2469999999999999999999999999999999999999999999999964 1356789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|++|||.++...........++++.++++.+|++++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA--------RLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5667999999986432211111234568889999999998888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++|+++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G 216 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNG 216 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887653 389999999999988889999999864
No 106
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.1e-40 Score=328.15 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=170.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
+.+++|.+.|.. .=-.++++|++||+++|+||||||||||+++|+|+..|.+|+|.++|++ .-..+-++++||
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567889998853 2246789999999999999999999999999999999999999999987 234578999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+..+|. .||.+|+.++....-....+..+++..++.++|+..+.+++|. +||||||||+|+||+|+++-+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~--------~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------ELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc--------ccCchHHHHHHHHHHHhccCCe
Confidence 999986 5999999998765433334567789999999999999999995 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||+|+|||..+.++..++ .+.+.|++||||.++.++ .+|++++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 9999999999999998877654 456999999999999875 69999999975
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.8e-39 Score=349.12 Aligned_cols=199 Identities=25% Similarity=0.339 Sum_probs=169.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999545689999999999999999999999999999999999999999999999964 1 14578
Q ss_pred EEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.|. +||||||||++|||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral 152 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI--------QLSGGEQQRVGIARAV 152 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch--------hCCHHHHHHHHHHHHH
Confidence 9999999986 467999999875322111111223457789999999888887763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|+|||+++.+. .||+|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887764 3799999999999886 58999999864
No 108
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=363.72 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=168.9
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-------ccc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~lr 512 (1064)
|+++||++.|+++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999742 479999999999999999999999999999999999999999999999964 1 346
Q ss_pred ccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 513 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 513 ~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
++||||||+| .++..|++||+.++....+.......+++.++++.+|++ ++.++.| .+||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 7899999998 466789999998754322111112345678899999997 5666666 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||+.+|++|||||||++||+.++.++.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887753 389999999999987 579999999864
No 109
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-39 Score=349.57 Aligned_cols=198 Identities=24% Similarity=0.302 Sum_probs=169.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEE
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~ 516 (1064)
++++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999643 179999999999999999999999999999999999999999999999964 23467899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 9999998876 599999976432211111123457788999999998887766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 212 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999998887764 4899999999999765 69999999864
No 110
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=367.38 Aligned_cols=201 Identities=21% Similarity=0.270 Sum_probs=170.9
Q ss_pred CCcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--c------
Q 001511 442 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~------ 509 (1064)
...|+++||++.|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4579999999999642 469999999999999999999999999999999999999999999999843 1
Q ss_pred --------------cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcc
Q 001511 510 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 572 (1064)
Q Consensus 510 --------------~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~ 572 (1064)
.+++.|+||||+| +++..|++||+.++............+++.++++.++++ ++.++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2467899999998 578889999998864321111112234677889999996 5777766
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEe
Q 001511 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1064)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~ 648 (1064)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+ +.||+|++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999887753 489999999999976 5799999998
Q ss_pred CC
Q 001511 649 GE 650 (1064)
Q Consensus 649 ~~ 650 (1064)
++
T Consensus 251 ~G 252 (320)
T PRK13631 251 KG 252 (320)
T ss_pred CC
Confidence 75
No 111
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=374.78 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=173.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
...|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.|||
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123578999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.||+.|+............+++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~--------~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--------QLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998875 5999999997543222122234678899999999999999885 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++||||||||+||+..++.+.+.+ ++.|.|+|++|||++.+ ..+|+|++|+++
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998876544 44589999999999986 579999999864
No 112
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-39 Score=346.34 Aligned_cols=197 Identities=24% Similarity=0.373 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999964 122457999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK--------QLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998774 6999999875322111111234567788999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 999999999999999998887754 3899999999999875 59999999764
No 113
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.4e-39 Score=349.20 Aligned_cols=198 Identities=21% Similarity=0.246 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
|+++||++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999643 689999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++ ..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999877 5799999987532211111122356788999999988777766 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 208 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDG 208 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999988865 3689999999999885 69999999864
No 114
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.5e-39 Score=352.48 Aligned_cols=199 Identities=24% Similarity=0.352 Sum_probs=169.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+++++||++.|+.++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 37899999999635679999999999999999999999999999999999999999999999964 1 14678
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ .+|||||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQ 152 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 999999998765 699999987532110 011123456788999999988877766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 99999999999999999999999999999998887754 389999999999987 469999999864
No 115
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=351.54 Aligned_cols=194 Identities=29% Similarity=0.366 Sum_probs=169.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++..|++||+.++..... ...+++.++++.++++ ++.++.+ .+||||||||++|||||+.+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987533211 2245678899999996 5667766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999998887754 3899999999999875 69999999864
No 116
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.1e-39 Score=358.03 Aligned_cols=199 Identities=29% Similarity=0.366 Sum_probs=166.3
Q ss_pred cEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----
Q 001511 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1064)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4889999999963 3679999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--CC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
.+++.++|+||+|. ++ ..|+.||+.++.... .......++++.++++.+++. +..++.+ .+|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13567999999983 33 479999997643211 111112345678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 999999999999999999999999999999999998887754 3899999999999886 69999999864
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=353.49 Aligned_cols=197 Identities=24% Similarity=0.317 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p 522 (1064)
+++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+..++|+||++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 378999999995 4679999999999999999999999999999999999999999999999965 22345699999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|+.||+.++............+++.++++.+++.+..++.| .+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI--------WQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8775 699999987532111111122456788999999988877766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||++||+.+...+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999887754 3899999999999874 6999999986
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-39 Score=350.99 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~i 515 (1064)
++++||++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 4689999999643689999999999999999999999999999999999999999999999964 1 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC--------CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+|+||++.++. .|++||+.++.... ........+++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998765 69999998753211 0011123456788999999988777766 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887754 3899999999999887 79999999864
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.1e-39 Score=347.62 Aligned_cols=200 Identities=28% Similarity=0.355 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-c--------
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~-------- 510 (1064)
..|+++||++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 479999999999653 3699999999999999999999999999999999999999999999999641 1
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.+..++.|. +||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA--------QLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh--------hCCHHHHHHHH
Confidence 1 257999999998776 5999999864321111111234578889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g 222 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887753 389999999999998889999999864
No 120
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.2e-39 Score=330.83 Aligned_cols=166 Identities=54% Similarity=0.997 Sum_probs=153.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l 524 (1064)
|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|++|++.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 478999999975568999999999999999999999999999999999999999999999883 579999999998
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
+..|+.||+.++ .+ .+||||||||++||||++.+|+++||||
T Consensus 76 ~~~tv~~nl~~~------------------------------~~--------~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 888999999753 12 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001511 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1064)
||++||+.+++.+.+.+++.+.|+|++||+++....+|++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999998865
No 121
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=348.08 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999995 4679999999999999999999999999999999999999999999999854 13456899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|++||+.++...........++++.++++.+++++..++.|. +||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK--------TYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 5999999875321111111234567889999999988888773 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998887754 3899999999999875 69999999864
No 122
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=361.90 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------c
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~ 509 (1064)
+|+++||++.|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 47899999999643 259999999999999999999999999999999999999999999999964 1
Q ss_pred cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
++++.++||||+| .++..|+.||+.++...........++++.++++.+++. ++.++.|. +||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF--------ELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc--------cCCHHHHHH
Confidence 2467899999998 677789999999864322211112345678899999995 57777664 899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887754 489999999999987 579999999875
No 123
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-39 Score=371.44 Aligned_cols=199 Identities=22% Similarity=0.316 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc--cEEEeCCCC----ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVG----SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~--G~I~i~g~~----~~lr~~i~ 516 (1064)
+.|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...++.|+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4689999999995 4679999999999999999999999999999999999999999 999999964 12356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||||++.+|. .|++||+.|+...........++++.++++.++|+++.++.|. +|||||||||+|||||+.
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA--------QLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh--------hCCHHHHHHHHHHHHHhc
Confidence 9999998875 5999999987543221112234578899999999999999885 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++|||||||+||+..+.++.+.+++ . |.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998876643 3 79999999999986 569999999864
No 124
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-39 Score=343.98 Aligned_cols=197 Identities=25% Similarity=0.325 Sum_probs=168.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccccccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~lr~~i~~v~Q~p 522 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999985 4679999999999999999999999999999999999999999999999975 23467899999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--------EELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8776 599999986432111111123456788999999988777766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 9999999999999998887764 3789999999999875 69999999864
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-39 Score=351.78 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~ 521 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+||+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 5699999999995 4679999999999999999999999999999999999999999999998865 3456789999999
Q ss_pred CCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+.++. .|++||+.++... ..++++.++++.+++.+..++.| .+||||||||++|||||+.+|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98776 6999999875321 13467888999999988877766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999998887754 489999999999986 569999999864
No 126
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=353.72 Aligned_cols=199 Identities=23% Similarity=0.255 Sum_probs=166.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999996 46799999999999999999999999999999999999997 48999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--------LSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--------ccCCHHHH
Confidence 246789999999988889999999876422111 01123456778889888742 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 378999999999987 469999999864
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-39 Score=363.05 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------------
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------ 508 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------ 508 (1064)
|+++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 269999999999999999999999999999999999999999999998642
Q ss_pred ------------------ccccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcC
Q 001511 509 ------------------SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRY 567 (1064)
Q Consensus 509 ------------------~~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~ 567 (1064)
..+++.||||||+| .++..|+.|||.++...........++++.++++.+|+. ++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 12467899999987 567789999999864322221122346788999999996 778887
Q ss_pred CCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCE
Q 001511 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDV 643 (1064)
Q Consensus 568 p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~ 643 (1064)
|. +||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+|||+++.+ ..||+
T Consensus 163 ~~--------~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 163 PF--------ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred hh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 74 8999999999999999999999999999999999999998887754 489999999999876 67999
Q ss_pred EEEEeCC
Q 001511 644 VLSLDGE 650 (1064)
Q Consensus 644 Il~l~~~ 650 (1064)
|++|+++
T Consensus 235 v~vl~~G 241 (305)
T PRK13651 235 TIFFKDG 241 (305)
T ss_pred EEEEECC
Confidence 9999764
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-39 Score=344.82 Aligned_cols=196 Identities=25% Similarity=0.323 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
|+++||++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 457999999999999 999999999999999999999999999999999965 13467899999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+.+.............+++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI--------GSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988764 99999986432111111122456788999999998877766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g 205 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888753 699999999999885 69999999864
No 129
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.3e-39 Score=363.44 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=171.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..++++||++.|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 5799999999995 4689999999999999999999999999999999999999999999999975 235678999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998775 699999986332221111122356778999999988777765 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887765 4899999999999885 69999999875
No 130
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.7e-39 Score=371.76 Aligned_cols=187 Identities=28% Similarity=0.318 Sum_probs=162.9
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccc----cccEEEEecCCCCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL----NKEIFYVPQRPYTA 525 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~l----r~~i~~v~Q~p~l~ 525 (1064)
+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .++ |+.++||||++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999965 123 67899999999988
Q ss_pred c-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 526 ~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
. .|++||+.++....+.......+++.++++.+||+++.+++|. +|||||||||+|||||+.+|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~--------~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD--------ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6 6999999986432222122245678899999999999999885 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||+||+.+++.+++.+.+ .|+|+|+||||++.+ +.||+|++|+++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999998887643 389999999999975 679999999864
No 131
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-39 Score=358.61 Aligned_cols=196 Identities=26% Similarity=0.318 Sum_probs=166.2
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----cc----cccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL----NKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~l----r~~i 515 (1064)
.++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678888884 5679999999999999999999999999999999999999999999999954 1 11 3579
Q ss_pred EEEecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++ ..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--------ELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc--------cCCHHHHHHHHHHHHHh
Confidence 9999999877 46999999875321111111234567889999999988888874 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|++|||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G 237 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDG 237 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999887654 379999999999986 469999999864
No 132
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-38 Score=346.19 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=171.8
Q ss_pred EEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 3679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|+.||+.++... ...+++.+.++..++.++++.+|.+... ....+|||||||||+|||||+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999875421 2344566677778888887776543221 245789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 212 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKG 212 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999988765 389999999999999889999999874
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-39 Score=358.54 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------ccccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~ 514 (1064)
..|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4699999999997557899999999999999999999999999999999999999999999999641 34678
Q ss_pred EEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 515 i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
++|+||+| .++..|++||+.++............+++.++++.+|+.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 4677899999987533211111122356788999999998887766 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887653 3899999999999886 79999999865
No 134
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.8e-39 Score=341.62 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=169.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 4689999999999999999999999999999999999999999999999975 134568999999
Q ss_pred CCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++ ..|++||+.++..... ..++++.++++.+++.+..++.+ .+||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKV--------KGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99776 5799999987532211 24567888999999998888766 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g 202 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKG 202 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887764 4899999999999885 69999999864
No 135
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.1e-39 Score=351.93 Aligned_cols=198 Identities=23% Similarity=0.263 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC-c-------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG-S-------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~-~-------~ 510 (1064)
+++++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ . .
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 378999999996 457999999999999999999999999999999999999998 9999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.++.++|+||++.++..|+.||+.++...... ......+++.++++.+|+. +..++.+ .+|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHH
Confidence 35789999999988779999999875322111 1112345678899999997 5566655 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|+|||+++.+ ..+|++++|+++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998887652 58999999999977 469999999874
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=357.15 Aligned_cols=199 Identities=25% Similarity=0.321 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
+++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 37899999999655679999999999999999999999999999999999999999999999964 12356799
Q ss_pred EEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~laral~ 152 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK--------TLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc--------cCCHHHHHHHHHHHHHH
Confidence 9999985 4567999999876432111111224567888999999988888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||+|++++++
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 99999999999999999999998887754 489999999999999889999999864
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=359.81 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------cc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------SD 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~~ 510 (1064)
++++||++.|+++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 469999999999999999999999999999999999999999999999954 13
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+++.||||||+| .++..|+.||+.++...........++++.++++.+|+. +..++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 467899999998 467789999999864322111112345678899999996 6777766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887764 389999999999987 579999999865
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-39 Score=357.22 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
..++++||++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46899999999964 3579999999999999999999999999999999999999999999999964 1345789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|+.||+.++............+++.++++.+|+.++.++.|. +||||||||++|||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~laral 155 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH--------RLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 9999998 45678999999876432211111234568889999999999888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G 216 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 999999999999999999999999888764 289999999999998889999999865
No 139
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=343.84 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 48999999999654579999999999999999999999999999999999999999999999954 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|+.||+.++... ...+++.++++.+++.++.+++|.+... ....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999876432 2345677788888998888887643221 245689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999888765 379999999999998889999999875
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=360.09 Aligned_cols=198 Identities=23% Similarity=0.281 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------c
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~ 510 (1064)
++++||++.|++. .++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+- .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999999631 2
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
.++.|+||||+| .++..|+.||+.++............+++.++++.++|. ++.++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 356899999998 567789999998764322111112235678899999996 5667766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ +.||+|++|+++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998887754 389999999999987 479999999864
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=353.85 Aligned_cols=200 Identities=23% Similarity=0.262 Sum_probs=166.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 35799999999985 46799999999999999999999999999999999999985 89999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|++||+.++...........++++.++++.+++.+ ..++.+ .+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA--------LSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--------hhCCHHHH
Confidence 124578999999998887999999987532111111112345778899998842 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3799999999999874 69999999864
No 142
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-39 Score=347.60 Aligned_cols=199 Identities=29% Similarity=0.394 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~l 511 (1064)
+|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999643 289999999999999999999999999999999999999999999999964 1 12
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++. .|+.||+.++............+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 152 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP--------AQLSGGQKQRVGIA 152 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh--------hhCCHHHHHHHHHH
Confidence 578999999998876 699999987532111111123456788999999998888776 38999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 217 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 3899999999999875 69999999864
No 143
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-39 Score=370.00 Aligned_cols=198 Identities=21% Similarity=0.335 Sum_probs=170.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 12346799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|++||+.++...........++++.++++.+++.++.++.|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~--------~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 6999999987532211111234578889999999998888884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999988776653 3899999999999764 69999999864
No 144
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.6e-39 Score=345.73 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-----CCCccEEEeCCCC-c-------cc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVG-S-------DL 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-----~p~~G~I~i~g~~-~-------~l 511 (1064)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ . .+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 457999999999999999999999999999999999999 9999999999964 1 23
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++..|++||+.++........ ...++++.++++.+|+.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 568999999998887899999987643221111 1124567889999999877666530 148999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++. ..|+|++||+++.+. .||++++|+++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999887653 379999999999875 69999999864
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=6e-39 Score=342.46 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i~ 516 (1064)
++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999964 6799999999999999999999999999999999999999999999999531 2457899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||++.++. .|+.||+.++.. ..........+++.++++.+++++..++.|. +||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc--------ccCHHHHHHHHHHHHHh
Confidence 9999998775 699999987532 1111111234567889999999888888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999888764 4899999999999885 69999999864
No 146
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-39 Score=353.96 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 45799999999995 4679999999999999999999999999999999999987 699999999853
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.++++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 160 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNESG--------YSLSGGQQ 160 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCCc--------ccCCHHHH
Confidence 1345689999999988878999999876432211 1122456677888888743 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999988865 378999999999877 57999999986
No 147
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.6e-39 Score=348.01 Aligned_cols=198 Identities=25% Similarity=0.357 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999964 1223579999
Q ss_pred ecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.+ +..|++||+.++............+++.++++.+|+.+..++.+ .+||||||||++|||||+.+|
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999977 56799999986532211111123456778999999987777665 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G 208 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRG 208 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCC
Confidence 99999999999999999998887753 389999999999998889999999864
No 148
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-38 Score=340.70 Aligned_cols=200 Identities=31% Similarity=0.440 Sum_probs=176.1
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 579999999999999999999999999999999999999999999999964 23567899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|++||+.+... ...+++.++++.+++.++++++|.+... .+..+||||||||++|||||
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999988999999975321 2456788899999999988877654332 35679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998875 378999999999999889999999874
No 149
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-38 Score=340.55 Aligned_cols=201 Identities=30% Similarity=0.505 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999643 579999999999999999999999999999999999999999999999964 12456899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|+.||+.++... ...+++.++++.+++.+..++.|.+..+ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999988878999999875321 2345677889999999988887753332 23568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.++.||++++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g 214 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999988763 47999999999988899999999864
No 150
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-39 Score=354.82 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.+++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 47999999999963 5689999999999999999999999999999999999999999999999964 1356789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|++||+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999998 4556799999987532211111112345778999999998888877 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ . ++|+|++||+++.+..||++++|+++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 218 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEG 218 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECC
Confidence 999999999999999999999999888765 2 58999999999988889999999865
No 151
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.5e-39 Score=348.30 Aligned_cols=198 Identities=27% Similarity=0.389 Sum_probs=168.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~lr~~i 515 (1064)
+++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 378999999995 4679999999999999999999999999999999999999999999999954 1 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++... ........++++.++++.+|+++..++.| .+||||||||++|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al 151 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP--------SELSGGQQQRVAIARAL 151 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh--------hhcCHHHHHHHHHHHHH
Confidence 99999998765 6999999875311 11111123456788999999988888776 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887754 4899999999999885 69999999864
No 152
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5e-39 Score=348.58 Aligned_cols=197 Identities=28% Similarity=0.409 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i~~ 517 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 4679999999999999999999999999999999999999999999999964 1 1 2457999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcC----------CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~----------~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+||++.++.. |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988764 9999998754321110 1112346778999999988777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999887764 4899999999999885 59999999864
No 153
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.9e-39 Score=351.20 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=168.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---------------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 509 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------------- 509 (1064)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+-
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46899999999999999999999999999999999999999999999998531
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHH
Q 001511 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ----~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++. .|+.||+.++... ........++++.++++.+++.+..++.|. +|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA--------QLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh--------hcCHHH
Confidence 23578999999998764 7999999874211 111111234567889999999988888773 899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887754 389999999999988 469999999864
No 154
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.1e-39 Score=358.64 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++||++.|..++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+ .+.++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 57889999999645789999999999999999999999999999999999999999999999965 2567899999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||+|.++ ..|++||+.|....+.......++++.++++.++|.+..++.. .+||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999865 4699999988544332221234578999999999997444333 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
+++||||||+|||+.+...+.+.+++ .| +||+++||.++.+.. ||+|++++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999888765 35 899999999998875 9999999875
No 155
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.5e-39 Score=346.27 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=166.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cc-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~-lr~~i~~ 517 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .. .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999964 11 2457999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999987765 99999987532211111122346778999999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998887754 489999999999765 569999999864
No 156
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=339.24 Aligned_cols=195 Identities=23% Similarity=0.317 Sum_probs=165.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 478999999963 33 39999999999999999999999999999999999999999999964 123467999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG--------ELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999876431111111235578899999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 999999999999999999887754 3899999999999885 59999999864
No 157
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9e-39 Score=359.65 Aligned_cols=199 Identities=25% Similarity=0.274 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3689999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcC
Confidence 999998764 699999975322111111112345677899999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887765 4899999999999885 69999999864
No 158
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.5e-38 Score=342.69 Aligned_cols=199 Identities=31% Similarity=0.426 Sum_probs=164.0
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~l 511 (1064)
.|+++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999643 279999999999999999999999999999999999999999999999964 124
Q ss_pred cccEEEEecCCC--CC-cccHHHHhcCCCCCCCcCCC-CCHHH-HHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHH
Q 001511 512 NKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQEVEP-LTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 512 r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~~~~~-~~~~~-i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++.++|+||++. ++ ..|++||+.++......... ...++ ..++++.+++. ++.++.+ .+|||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~q 152 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQ 152 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHH
Confidence 578999999993 33 57999999764321111010 11122 24788899985 5667666 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ . |.|+|++||+++.+. .||++++|+++
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 222 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCC
Confidence 99999999999999999999999999999999887754 2 899999999999886 79999999864
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.7e-39 Score=349.77 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~ 509 (1064)
+++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 589999999996 4579999999999999999999999999999999999999999999999853 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
.+++.++|+||++.++. .|+.||+.++... .........+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 23568999999998775 6999999864211 11111112346778899999987777665 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999887754 4899999999999885 69999999864
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=354.33 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|+++.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 58899999999755679999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||+|. ++..|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH--------HLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHHHHHHc
Confidence 999983 5678999999875422111111223567889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ +.||++++|+++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887753 389999999999988 579999999865
No 161
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=354.61 Aligned_cols=200 Identities=22% Similarity=0.290 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cc
Q 001511 443 NYIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SD 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~ 510 (1064)
++++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999974 2579999999999999999999999999999999999999999999999954 12
Q ss_pred ccccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 LNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 lr~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+++.++|+||+|. ++..|+.+|+.++...........++++.++++.+|+.++.++.|. +||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~ 154 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH--------LLSGGQKQRVA 154 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHH
Confidence 4678999999984 5566899999886432211111234568889999999999888874 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||++++|+++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G 220 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999887754 389999999999998889999999864
No 162
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=347.73 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=167.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999999643679999999999999999999999999999999999999999999999964 1345689999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh--HHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||+|.++. .|++||+.++............+++.++++.+++.+ +.++.+ .+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998775 699999987532211111123456788999999985 666665 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..+|+|++|+++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887764 389999999999976 579999999875
No 163
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-39 Score=346.44 Aligned_cols=184 Identities=29% Similarity=0.362 Sum_probs=163.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------c---cc-cccEEEEecCCCC-Ccc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL-NKEIFYVPQRPYT-AVG 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~l-r~~i~~v~Q~p~l-~~~ 527 (1064)
.-++|+||+|+.||+..|+|-||||||||+|++.||++|++|+|.++|.+ . ++ |+++++|||+.-+ |..
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 36899999999999999999999999999999999999999999999976 1 22 4789999999865 567
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
||.||..||....+..+.+.++++.++++.+||+.+.++||+ +|||||||||.|||||+.+|+||++|||+|
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~--------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN--------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc--------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 999999999887766666677889999999999999999996 899999999999999999999999999999
Q ss_pred CCCHHHHHHHH----HHHHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 608 AVTTDMEERFC----AKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||-.+.+++ ++.++.++|+++||||++.+ +..|||..|+++
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 99997665554 44556799999999999875 678999999865
No 164
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-38 Score=341.92 Aligned_cols=198 Identities=24% Similarity=0.384 Sum_probs=170.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
+.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 12457899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++..|++||+.++...... ...++++.++++.+++. ...++.+ .+||||||||++|||||+.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 99999998888999999874321111 12345677899999996 4666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~ 214 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHA 214 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEeccc
Confidence 9999999999999999999998887654 3899999999999988999999997654
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=349.89 Aligned_cols=200 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4579999999999999999999999999999999999986 589999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++++++|+||++.++..|++||+.++.... .......++++.++++.+++. +..++.+ .+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--------YSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC--------CCCCHHH
Confidence 12467899999999888899999998753221 111112245678899999984 3344443 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 231 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3789999999999874 69999999864
No 166
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=330.37 Aligned_cols=199 Identities=26% Similarity=0.304 Sum_probs=175.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
++++.+++++|++...+++||||+++.||++||.|||||||||++|+|++++.|++|.|.+||.| ...|++||++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 47899999999875569999999999999999999999999999999999999999999999976 3578999999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+-+..++ ..|++|||.|.....+......++++.++.+.+++.+.+++.. .+||-||||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 9666555 4699999998655444444456788999999999999988865 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++++|||||||||..+...+.+.++ +.|+++|+.||.++.++ .||++++++++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999998877654 45999999999999997 79999999875
No 167
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.4e-38 Score=333.36 Aligned_cols=192 Identities=28% Similarity=0.438 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEec
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
++++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4789999999754 3799999999999999999999999999999999999999999999998 6999999
Q ss_pred CCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCC
Q 001511 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|.++..|++||+.++... .+++..++++.+++.+.++..|.+..+ ....+||||||||++|||||+.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999986421 234566778888998888877653321 345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCA-KVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~-~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+.+.+.+ +++ +.|.|+|++||+++.+..+|++++|+++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 9999999999999999988876 343 2479999999999998889999999864
No 168
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=347.15 Aligned_cols=202 Identities=21% Similarity=0.228 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~------~~lr~~ 514 (1064)
.++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4689999999999999999999999999999999999984 699999999964 134678
Q ss_pred EEEEecCCCCCcccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
++|+||++.++..|++||+.++....... ....++++.++++.+++.+.+..... ..+.+||||||||++||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK----QNALALSGGQQQRLCIARA 156 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc----CCcccCCHHHHHHHHHHHH
Confidence 99999999988899999998753221111 11234567789999999643321110 1235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.++..+.+.+++ .+.|+|+|||+++.+. .+|++++|+++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 9999999999999999999999999888765 4899999999999774 79999999864
No 169
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-38 Score=341.05 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=173.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++|+++.|++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4789999999755679999999999999999999999999999999999999999999999964 1345679999
Q ss_pred ecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHcc
Q 001511 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||++.++..|++||+.++... ..++++.+.++.+++.+..+.+|.+... .+..+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886432 2344566778888888887777643222 2467899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++. |.|+|++||+++.+..||++++|+++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g 211 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887643 88999999999999889999999875
No 170
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=366.59 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=172.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++++|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999995 5789999999999999999999999999999999999999999999999964 245678999
Q ss_pred EecCCCC-CcccHHHHhcCCCCCC--Cc--CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSD--QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~--~~--~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|+|++.+ +..|++||+.++...+ .. ......+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999987 5689999998864321 00 01223567889999999999888866 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|++|||||||++||+.++.++++.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887764 489999999999998 579999999875
No 171
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.8e-38 Score=340.88 Aligned_cols=195 Identities=22% Similarity=0.342 Sum_probs=164.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cc-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~-lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+ .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999995 4579999999999999999999999999999999999999999999999954 11 2567999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||++.++.. |++||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999987764 99999987643221 112344566777777 4666666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCC
Confidence 9999999999999999999999888764 479999999999986 469999999864
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.2e-38 Score=348.35 Aligned_cols=200 Identities=21% Similarity=0.262 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------ 509 (1064)
.+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 35799999999996 46799999999999999999999999999999999999999999999999531
Q ss_pred -------cccccEEEEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCc
Q 001511 510 -------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 -------~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~L 579 (1064)
.+++.++|+||++.++. .|++||+.++.. .........++++.++++.+|+.+.. ++.+ .+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccC
Confidence 23568999999998876 599999986421 11111112345678899999998764 5555 489
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||+|++++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999999887654 4899999999999887 59999999864
No 173
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=367.21 Aligned_cols=184 Identities=26% Similarity=0.329 Sum_probs=158.7
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c----ccccEEEEecCCCCCc-c
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D----LNKEIFYVPQRPYTAV-G 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~----lr~~i~~v~Q~p~l~~-~ 527 (1064)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .+++++||||++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999964 1 1 1357999999998875 6
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
|++||+.++...........++++.++++.+|+.++.+++|. +||||||||++|||||+.+|++|||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~--------~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD--------ELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999986432211111234578889999999999898884 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 608 AVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||+.+++.+++.+++ .|+|+|+|||+++.+ +.+|+|++|+++
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999998887753 489999999999987 469999999864
No 174
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2e-38 Score=361.31 Aligned_cols=199 Identities=25% Similarity=0.293 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.|||
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999995 5679999999999999999999999999999999999999999999999965 235678999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++ ..|+.||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999875 5699999985322111111112345678899999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999988765 4899999999999885 69999999875
No 175
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=351.72 Aligned_cols=198 Identities=23% Similarity=0.270 Sum_probs=167.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i 515 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999999641 235689
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999985 456789999987532211111112345778999999988877765 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..+|++++|+++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887764 489999999999988 469999999874
No 176
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=352.04 Aligned_cols=199 Identities=25% Similarity=0.357 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i 515 (1064)
+++++||++.|++++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 378999999997556799999999999999999999999999999999999999999999999541 245789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|+.||+.++............+++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~Gq~qrv~laral 152 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP--------HHLSGGQKKRVAIAGIL 152 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 9999998 4667899999987532211111122356788999999988888776 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G 213 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDG 213 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887764 3899999999999876 69999999864
No 177
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-38 Score=338.56 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=164.1
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c-----cccccEE
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-----DLNKEIF 516 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~-----~lr~~i~ 516 (1064)
++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468999886 4679999999999999999999999999999999999999999999999964 0 1356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++|++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 699999987532211111123456788999999988877766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999988765 389999999999988889999875
No 178
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.4e-38 Score=350.39 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~ 513 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4799999999995 5679999999999999999999999999999999999999999999999854 1 1356
Q ss_pred cEEEEecCCCCCcc-cHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
.++|+||++.++.. |+.||+.++..... .......+++.++++.+++.+..++.|. +||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS--------ELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHH
Confidence 79999999988764 99999986532111 1111123467788999999888887763 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 99999999999999999999999998887754 2799999999998775 69999999864
No 179
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=352.51 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---cEEEeCCCC------cccc
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~------~~lr 512 (1064)
..|+++|+++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 47999999999964 3579999999999999999999999999999999999999987 899999964 1345
Q ss_pred ccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 ~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++++|+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA--------NLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHH
Confidence 78999999984 5678999999876432211111223567889999999998888874 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G 219 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 389999999999999899999999864
No 180
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=353.63 Aligned_cols=199 Identities=26% Similarity=0.349 Sum_probs=168.0
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------- 509 (1064)
.|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999632 4699999999999999999999999999999999999999999999999641
Q ss_pred cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
..++.++|+||+| .++..|+.||+.++............+++.++++.+++. ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 2356899999998 466789999998753221111112345678899999997 6777766 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887764 489999999999987 479999999864
No 181
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=348.56 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~ 509 (1064)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4799999999995 4579999999999999999999999999999999999986 489999999953 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.+++.++|+||++.++..|+.||+.++...... ....++++.++++.+++.+.+..... ....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKLK----QSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHhc----CCcccCCHHHHHHHHH
Confidence 236689999999988878999999886432211 11223556677888888543221110 1234899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+ ..||++++|++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 99999999999999999999999999998887652 68999999999976 57999999984
No 182
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-38 Score=339.32 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=171.6
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
|+++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 379999999999999999999999999999999999999999999999954 134678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|++||+.++... ...+++.+.++..++.++++.+|.+... ....+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999998889999999886432 1334566677778888887776533221 245689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 212 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCC
Confidence 99999999999999999999999988865 389999999999999889999999875
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=350.53 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.++++||++.|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 68999999999742 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|+.||+.++............+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA--------RLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5678999999875332111111123457789999999988888763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..+|+|++|+++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G 216 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAG 216 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887753 389999999999998889999999864
No 184
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=344.78 Aligned_cols=199 Identities=23% Similarity=0.256 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1064)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+ .
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4679999999999999999999999999999999999986 4 69999999954 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++. .|++||+.++....... ....++++.++++.+++.+. .++.+ .+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 153 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA--------MELSGGQ 153 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------CcCCHHH
Confidence 24678999999998876 69999998653221111 11223567788999998643 23323 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+ ..||++++|+++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 78999999999987 579999999864
No 185
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=349.17 Aligned_cols=200 Identities=26% Similarity=0.330 Sum_probs=170.8
Q ss_pred CcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
+.++++|+++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999753 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 456689999987643221111122456778999999988887766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..+|+|++|+++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G 218 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECC
Confidence 999999999999999999999998887754 379999999999988889999999864
No 186
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.5e-38 Score=335.62 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=166.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++||++.|+. .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 468999999952 5689999999999999999999999999999999999999999999964 234678999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+|.++. .|+.||+.++...........++++.++++.+++++..++.|. +||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE--------QLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999865321111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECC
Confidence 999999999999999998887754 3799999999999875 69999999864
No 187
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=351.17 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------cc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------SD 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~~ 510 (1064)
|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999642 469999999999999999999999999999999999999999999999954 12
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. ++.++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456899999998 567789999998753211111111234567788999996 4556655 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999874 69999999864
No 188
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-38 Score=345.76 Aligned_cols=200 Identities=27% Similarity=0.338 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
...++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 34799999999996 4689999999999999999999999999999999999999999999999964 2346689
Q ss_pred EEEecCCCCC-cccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYTA-VGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+|+||++.++ ..|+.||+.++.... . ......++++.++++.+++.++.++.|. +||||||||++||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la 159 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD--------SLSGGERQRAWIA 159 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc--------cCCHHHHHHHHHH
Confidence 9999997654 459999998753211 0 0011234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 3899999999999884 79999999864
No 189
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=344.59 Aligned_cols=198 Identities=24% Similarity=0.291 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC------cccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 512 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~------~~lr 512 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 589999999996 46799999999999999999999999999999999999974 79999999964 2346
Q ss_pred ccEEEEecCCCC-CcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 513 KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 513 ~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+.|+|+||+|.+ +..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA--------GKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc--------ccCCHHHHH
Confidence 789999999975 467999999875321111 111234567889999998642 34433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999888765 379999999999987 479999999864
No 190
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-38 Score=352.34 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=166.7
Q ss_pred CcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------
Q 001511 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1064)
+.|+++||++.|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 569999999999653 259999999999999999999999999999999999999999999999853
Q ss_pred -ccccccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 509 -SDLNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 -~~lr~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.|+|+||+|. ++..|++||+.++............+++.++++.+++. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 124568999999983 56679999998753211111111234567788999994 5666655 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+ +.||++++|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998887653 389999999999976 579999999874
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-38 Score=347.49 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=167.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 46799999999999999999999999999999999999975 89999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGG 582 (1064)
..+++.++|+||+|.++..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG--------TGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHH
Confidence 1246789999999988878999999875321111 111124567889999999643 33333 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999988865 368999999999988 468999999864
No 192
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.1e-37 Score=336.17 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=164.5
Q ss_pred CCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccc
Q 001511 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~ 513 (1064)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4689999999999753 479999999999999999999999999999999999999999999999964 13457
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc---cCCCCCcChHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~---~~~g~~LSGGqrQRlaIA 590 (1064)
.++|+||++.++..|++||+.++.... ...++.+..+..++.++++.++.+.. .....+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 899999999988889999998764321 11222222333334444444321111 112358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|+|++|+++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999999988865 368999999999999889999999864
No 193
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-38 Score=344.09 Aligned_cols=198 Identities=28% Similarity=0.382 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 488999999996 4679999999999999999999999999999999999999999999999954 124567999
Q ss_pred EecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc--
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 594 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-- 594 (1064)
+||++.+ +..|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY--------PQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcc
Confidence 9999977 56799999987543211111123456788999999988877776 389999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ----~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 217 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999998877653 4899999999999875 79999999864
No 194
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.3e-38 Score=362.80 Aligned_cols=186 Identities=27% Similarity=0.327 Sum_probs=160.1
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC----C------cc---cc-ccEEEEecCC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G------SD---LN-KEIFYVPQRP 522 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~----~------~~---lr-~~i~~v~Q~p 522 (1064)
...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. + .+ .| ++++||||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457899999999999999999999999999999999999999999999984 2 11 22 5799999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++............+++.++++.+|+.++.+++|. +||||||||++|||||+.+|++||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~--------~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG--------ELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 7999999987432211111234577889999999998888884 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||||+||+.++..+++.+.+ .++|+|+||||++.+ +.+|+|++|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999998887653 389999999999986 679999999875
No 195
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-38 Score=345.82 Aligned_cols=200 Identities=22% Similarity=0.240 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~------- 509 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+-
T Consensus 10 ~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 35799999999996 4579999999999999999999999999999999999987 3 699999999641
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++.+ .+|||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LS~Gq 160 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA--------LSLSGGQ 160 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--------ccCCHHH
Confidence 3457899999999888889999998753221110 11123456778888888643 23322 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++. ++|+|+|||+++.+. .||++++|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 789999999999875 69999999864
No 196
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.5e-38 Score=347.18 Aligned_cols=200 Identities=26% Similarity=0.357 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------
Q 001511 443 NYIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1064)
.+|+++||++.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999952 2479999999999999999999999999999999999999999999999954
Q ss_pred ccccccEEEEecCCC--CC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
...++.++|+||++. ++ ..|+.+|+.++.... ........+++.++++.+++. +..++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~ 154 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQ 154 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHH
Confidence 122457999999984 33 358999987643211 111112345678899999994 6666655 3899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887764 3899999999999987 59999999864
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=346.19 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+-
T Consensus 19 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 34799999999996 4679999999999999999999999999999999999864 7999999998541
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+|||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq 169 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--------LSLSGGQ 169 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--------ccCCHHH
Confidence 24678999999999888899999987532111111 11234567788888874 3344443 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 689999999999764 79999999864
No 198
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=345.99 Aligned_cols=197 Identities=23% Similarity=0.277 Sum_probs=163.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~--------~ 510 (1064)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+- .
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 589999999996 45799999999999999999999999999999999999974 799999999541 2
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+++.++|+||++.++. .|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--------GGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 4578999999998776 6999999865322111 11123456778899998853 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+ +.||+|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999999888765 368999999999987 57999999974
No 199
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-37 Score=338.82 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=170.4
Q ss_pred EEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 3579999999999999999999999999999999999999999999999954 12356799
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|++||+.++... ...+++.+.++..++.++.+.+|.+... ....+||||||||++|||||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD------ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC------CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 99999988888999999876432 1234556677778888777776543221 24568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G 213 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988765 489999999999998899999999875
No 200
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=342.91 Aligned_cols=199 Identities=22% Similarity=0.266 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc---CCC--CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p--~~G~I~i~g~~~-------- 509 (1064)
++++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+-
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4689999999995 46799999999999999999999999999999999997 455 599999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 152 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA--------FALSGGQQ 152 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--------ccCCHHHH
Confidence 2356899999999888789999998753221111 11133567788999998643 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999988865 378999999999987 569999999864
No 201
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.1e-38 Score=340.49 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=169.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-------cccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~lr~~i~ 516 (1064)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 2 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 589999999996 46799999999999999999999999999999999999999999999999641 1245799
Q ss_pred EEecCCCCCcc-cHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 517 YVPQRPYTAVG-TLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 517 ~v~Q~p~l~~~-Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
|+||++.++.. |++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999988865 99999987532110 000113456788999999988777766 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||++.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||+|++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999988875 3789999999999886 69999999864
No 202
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-38 Score=343.32 Aligned_cols=198 Identities=25% Similarity=0.299 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 689999999995 4679999999999999999999999999999999999997 489999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|++|++.++..|++||+.++........ ...++++.++++.+++. +..++.+ .+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA--------QAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--------hhCCHHHHH
Confidence 4678999999999888999999987532211111 11234677888888884 2333333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 999999999999999999999999999999998887753 789999999999875 69999999864
No 203
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-38 Score=353.55 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=170.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+||+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 378999999995 5679999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++. .|+.||+.+.....+.......+++.++++.+|+.+..++.+ .+||||||||++|||||+++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998875 499999986432211111122456788999999998877766 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .||+|++|+++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887653 799999999999775 69999999865
No 204
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-38 Score=320.28 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=176.2
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecC
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~ 521 (1064)
.+.+++++.+|++. ..+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.. ..-...=|.|||+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 35678899999642 359999999999999999999999999999999999999999999999963 1112346899999
Q ss_pred CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+-++ ..|+.||+.|+....+..+....+.+.+.+..+||+++-++++. +||||||||+.|||||..+|++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~--------qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW--------QLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceE--------eecchHHHHHHHHHHhhcCcceE
Confidence 9764 57999999999876655544556678889999999999888874 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEe
Q 001511 601 ILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~ 656 (1064)
+||||++|||.-+++++++++ ++.|+.+++|||+++.+- .++++++|+++.+.+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999988765 456999999999999875 58999999988766654
No 205
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=340.97 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------~l 511 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 478999999995 46799999999999999999999999999999999999999999999998531 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCC-CCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++.++|+||++.++. .|+.||+.+.. ...........+++.++++.+|++++.++.|. +||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHH
Confidence 568999999998875 59999997521 11111111124567889999999988888773 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 217 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999998887764 4899999999999885 69999999864
No 206
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.5e-38 Score=340.61 Aligned_cols=197 Identities=27% Similarity=0.393 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999996 4579999999999999999999999999999999999999999999999965 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+|.++. .|+.||+.+.............+++.++++.+++.++.++.+ .+|||||+||++|||||+.+|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998886 499999987543211111123456788999999988877766 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ . ++|+|++||+++.+ +.||++++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999888764 2 79999999999986 469999999865
No 207
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=345.74 Aligned_cols=200 Identities=22% Similarity=0.238 Sum_probs=167.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
...|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+-
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45799999999995 4689999999999999999999999999999999999996 5899999999641
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA--------LTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc--------ccCCHHH
Confidence 2367899999999888889999998763221111 1123456778899999853 333333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|+++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999888765 378999999999987 579999999864
No 208
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.9e-38 Score=336.51 Aligned_cols=198 Identities=25% Similarity=0.422 Sum_probs=170.0
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---------ccc
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------~lr 512 (1064)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999998642 5799999999999999999999999999999999999999999999999641 245
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+.++|+||+|.++. .|+.||+.++...... ......+++.++++.+++.+..++.|. +||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH--------NLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHH
Confidence 78999999998876 6999999875322111 111123467889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++....||+|++|+++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g 217 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988877653 489999999999988899999999864
No 209
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-37 Score=331.88 Aligned_cols=198 Identities=18% Similarity=0.314 Sum_probs=167.7
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---------cccccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~lr~~i 515 (1064)
.+.|+.+.|+.+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 577899999766789999999999999999999999999999999999999999999999864 1 134679
Q ss_pred EEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARA 592 (1064)
+|++|+|.++..|++||+.++.. ...++..++++.+++.+.++..|.+..+ ....+||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 99999999888899999987632 1234556778888888777766543222 2356899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHH--H---HHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCA--K---VRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~--~---l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++.+|+++||||||++||+.+++.+.+ . +++.|.|+|++||+++.+..+|++++|+++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 999999999999999999999887776 3 334589999999999999899999999763
No 210
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-38 Score=343.01 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=166.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+-
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 35799999999995 4579999999999999999999999999999999999974 6899999999541
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|+.||+.++....... .....+++.++++.+++.+. .++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq 154 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA--------LGLSGGQ 154 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHHH
Confidence 2357899999999888789999998753211110 11234567788999998543 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 378999999999987 469999999864
No 211
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=345.77 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=182.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 45899999999996 45799999999999999999999999999999999999863 69999999964
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|+.||+.++...... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq~ 167 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKG--------TALSGGQQ 167 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCc--------ccCCHHHH
Confidence 1246789999999988878999999875321111 11123456677888887532 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDG 661 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~ 661 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .||++++|++.....
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~------- 240 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEY------- 240 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccc-------
Confidence 9999999999999999999999999999999999888753 789999999999874 799999997421000
Q ss_pred cccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 662 SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
.+..|++++.++.++.+.+ |.|+++++++..
T Consensus 241 ----------------------~~~~G~~~~~g~~~~~~~~-~~~~~~~~~~~~ 271 (274)
T PRK14265 241 ----------------------GKRRGKLVEFSPTEQMFGS-PQTKEAREYISG 271 (274)
T ss_pred ----------------------cccCceEEEeCCHHHHHhC-CCCHHHHHHhhh
Confidence 1122344444555565554 689998887653
No 212
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=335.70 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---cccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---DLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---~lr~~i~~v~ 519 (1064)
+++++||++.|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|+|
T Consensus 1 ~l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 3789999999963 32 49999999999999999999999999999999999999999999965 1 1246799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|+.||+.++...........++++.++++.+|+++..++.|. +||||||||++||||++.+|+
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------QLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 5999999876321101111235678899999999998888884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 206 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG 206 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 3889999999999875 69999999864
No 213
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-38 Score=341.95 Aligned_cols=199 Identities=21% Similarity=0.209 Sum_probs=166.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1064)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+-
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4689999999996 46799999999999999999999999999999999999875 799999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+ ..++.+ .+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA--------LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 236789999999998889999999875322111 01122346678899998753 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||||++.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||++++++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999875 69999999875
No 214
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-37 Score=340.33 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=176.5
Q ss_pred CCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccc
Q 001511 441 EANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~ 513 (1064)
..+.|+++|+++.|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .++++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35689999999999653 579999999999999999999999999999999999999999999999964 23567
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIA 590 (1064)
.++|++|+|.++.+|++||+..... ...+++.++++.+++.++++.+|.+... .++.+||||||||++||
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 8999999999998999999864311 1345677788888999888888753332 35679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||+|++|+++
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G 230 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECC
Confidence 999999999999999999999999999888765 489999999999999889999999864
No 215
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-37 Score=342.63 Aligned_cols=199 Identities=21% Similarity=0.294 Sum_probs=164.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c------c-
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S------D- 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~------~- 510 (1064)
..++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ - .
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 46999999999964 679999999999999999999999999999999999999999999999964 1 1
Q ss_pred ---ccccEEEEecCCC--C-CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001511 511 ---LNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 511 ---lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGG 582 (1064)
.++.++|+||++. + +..|+.+|+.++...... ......+++.++++.+++. +..++.+ .+||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 155 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGG 155 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHH
Confidence 2457999999984 3 235888888653211110 0012245677889999996 3566655 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999998887653 3899999999999986 69999999864
No 216
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=341.24 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999996 4689999999999999999999999999999999999999999999999964 134567999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
+||++.++.. |+.||+.++.... .......++++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--------TDLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc--------ccCCHHHHHHHHHHHH
Confidence 9999987754 9999998753210 1111123456788999999988888776 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999887754 4899999999999875 79999999864
No 217
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=340.96 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4689999999996 4579999999999999999999999999999999999953 6 59999999954 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|++||+.++....... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA--------LGLSGGQQ 154 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--------ccCCHHHH
Confidence 2467899999999988899999998653211111 1122456777888988753 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988875 368999999999876 469999999875
No 218
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=340.98 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3699999999995 4689999999999999999999999999999999999999999999999964 1 1 23469
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC-------Cc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-------QE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-------~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~L 579 (1064)
+|+||++.++. .|+.||+.++.... .. ......+++.++++.+|+.+..++.+ .+|
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~L 154 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNL 154 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhC
Confidence 99999998876 59999998753210 00 00012245777899999988877766 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|+++||||||++||+.++..+.+.+.+ .|.|+|++||+++.+. .||++++++++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999998887753 3899999999999885 69999999865
No 219
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-37 Score=328.84 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=160.9
Q ss_pred CCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cccccc
Q 001511 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~ 514 (1064)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3569999999999753 479999999999999999999999999999999999999999999999964 234678
Q ss_pred EEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+|+||+|.++.+|++||+.+... ...+++.++++ +++.+ .+|||||+||++|||||+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~~~--------~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSEGG--------LNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccCCC--------CcCCHHHHHHHHHHHHHh
Confidence 999999999988999999975321 23344555544 22323 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++. |.|+|++||+++.+..+|++++|+++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g 199 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999888753 89999999999998889999999864
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=341.45 Aligned_cols=197 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc--------cc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------DL 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~--------~l 511 (1064)
-+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+- .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999995 4689999999999999999999999999999999999986 4799999999641 24
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA--------FELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh--------hhCCHHHHH
Confidence 6789999999988888999999875221111 011233567788999998652 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|+|||+++.+. .||++++|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999888765 3799999999999875 69999999874
No 221
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-37 Score=343.91 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=165.7
Q ss_pred cEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----
Q 001511 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1064)
+|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 5899999999974 4689999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--C-CcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 510 ---DLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
.+++.++|+||++. + +..|+.+|+.++.... ........+++.++++.+++. +..++.+ .+|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 24678999999983 3 3469999986542211 111112234678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 228 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999998877653 3899999999999886 69999999864
No 222
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=340.20 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=164.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 45799999999999999999999999999999999999763 69999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--------LGLSGGQQQ 153 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--------CCCCHHHHH
Confidence 467899999999887799999998753221111 1123456777888888753 334433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999888765 3789999999999764 69999999864
No 223
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=344.28 Aligned_cols=200 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.++++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 34799999999996 4579999999999999999999999999999999999987 699999999953
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA--------YGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--------ccCCHHH
Confidence 124678999999999888899999987532111111 11123456677776543 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+. .||++++|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 789999999999875 69999999864
No 224
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.2e-38 Score=352.69 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=159.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEecCCCCCc-ccHH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAV-GTLR 530 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~~-~Ti~ 530 (1064)
++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|+||++.++. .|++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4679999999999999999999999999999999999999999999999964 234678999999998775 5999
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD 610 (1064)
||+.+............++++.++++.+++.+..++.+ .+||||||||++|||||+++|++|||||||++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987432211111123456888999999988777766 3899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 611 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 611 ~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+++.+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999998887754 4899999999999885 69999999864
No 225
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-37 Score=336.14 Aligned_cols=194 Identities=25% Similarity=0.359 Sum_probs=162.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999996 4679999999999999999999999999999999999999999999999854 1 12467999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||++.++.. |+.||+.++...... ...+...++++.++ +.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988764 999999875332111 12234466777776 455556655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+.+ .|+|+|++||+++.+. .+|++++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887764 3799999999999887 59999999865
No 226
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=337.48 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=167.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 589999999995 4689999999999999999999999999999999999999999999999954 11356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||++.++. .|+.||+.++..... ......+.++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998776 599999987532111 111123456788899999987766655 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999988776653 589999999999765 579999999864
No 227
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=338.52 Aligned_cols=199 Identities=22% Similarity=0.234 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4689999999995 467999999999999999999999999999999999999997 6999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++....... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG--------LALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCc--------ccCCHHHH
Confidence 3467899999999988889999998754221111 11123456677888887543 33333 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999999999999998887765 3799999999999876 58999999865
No 228
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=339.07 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=164.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-------ccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~~l 511 (1064)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 589999999996 46799999999999999999999999999999999999986 59999999853 134
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--------FGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc--------ccCCHHHHHH
Confidence 67899999999888899999998753221111 11123456778888887532 33333 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998887753 689999999999876 59999999865
No 229
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.8e-37 Score=339.37 Aligned_cols=197 Identities=30% Similarity=0.401 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 4689999999999999999999999999999999999999999999999964 1335679999
Q ss_pred ecCCCC-CcccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 519 PQRPYT-AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||++.+ +..|+.||+.++.... . ......++++.++++.+++.+..++.+ .+||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999864 5679999998753211 0 001123456788999999988877766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999998887764 389999999999998 579999999864
No 230
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-37 Score=328.66 Aligned_cols=192 Identities=27% Similarity=0.360 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
+++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|++.++. .|+.||+.++..... ...++++.++++.+|+.++.++.+ .+||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99987664 699999987643211 124567888999999988877765 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEE
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. +.++++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999887764 3899999999999885 55677766
No 231
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=339.40 Aligned_cols=198 Identities=22% Similarity=0.255 Sum_probs=164.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4699999999995 46799999999999999999999999999999999999985 48999999864 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSA--------LGLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 24568999999998888999999986532111101 112345678889898853 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 999999999999999999999999999999999888765 3689999999999875 6999999974
No 232
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=342.97 Aligned_cols=200 Identities=23% Similarity=0.277 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-------c
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~ 509 (1064)
...++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 45789999999996 56899999999999999999999999999999999999986 79999999954 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|++||+.++...... ......+.+.++++.+++.+. .++.+ .+||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LSgGq~ 169 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP--------FRLSGGQQ 169 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc--------ccCCHHHH
Confidence 346789999999998889999999875321110 111122345677888888643 23333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999865 69999999864
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=338.37 Aligned_cols=199 Identities=22% Similarity=0.236 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
..|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4799999999995 56799999999999999999999999999999999999763 48999999964 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++........ ...++.+.++++.+++.+. .++. ..+||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHH
Confidence 23567999999998888899999987643211111 1223457778888887532 2332 248999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999998887652 689999999999885 69999999874
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=380.92 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=167.1
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1064)
.++|+++||++.|++ +.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 357999999999963 2479999999999999999999999999999999999999999999998731
Q ss_pred ------c---ccc-ccEEEEecCC--CCC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh---hHHhcCCCCc
Q 001511 509 ------S---DLN-KEIFYVPQRP--YTA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEK 571 (1064)
Q Consensus 509 ------~---~lr-~~i~~v~Q~p--~l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~ 571 (1064)
. .+| +.||||||+| .++ ..|+.||+.++...+ ........+++.++++.+|+. +..+++|+
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-- 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH-- 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc--
Confidence 0 122 4799999998 344 469999998764321 111112346788899999995 35677774
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEE
Q 001511 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLS 646 (1064)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+++ .|+|+|+||||++.+. .||+|++
T Consensus 168 ------~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 168 ------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred ------cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999998887654 3899999999999874 6999999
Q ss_pred EeCC
Q 001511 647 LDGE 650 (1064)
Q Consensus 647 l~~~ 650 (1064)
|+++
T Consensus 242 l~~G 245 (623)
T PRK10261 242 MYQG 245 (623)
T ss_pred eeCC
Confidence 9864
No 235
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=340.05 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
..|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 4799999999996 4679999999999999999999999999999999999999999999999964 13356799
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
|+||++.++. .|+.||+.++.... . ......++++.++++.+++.++.++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998764 69999998753211 0 001122456788999999998888776 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999998887754 388999999999976 579999999864
No 236
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.6e-37 Score=337.68 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=162.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c---------
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S--------- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~--------- 509 (1064)
.|+++||++.|+ +..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ -
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 689999999995 4579999999999999999999999999999999999999999999999853 1
Q ss_pred -cccccEEEEecCCCC---CcccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++.++|++|++.. +..|+.+|+.+... .........++++.++++.+++. +..++.+ .+|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 123569999999852 33588888854211 00000112345778899999996 4666655 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887653 3899999999999887 69999999864
No 237
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=334.91 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=165.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
.+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3689999999985 4679999999999999999999999999999999999999999999999964 1 135679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++..... ....++++.++++.+ ++.+..++.+ .+||||||||++|||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHH
Confidence 99999998876 599999987532111 111234566677777 4666555554 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ +.||++++|+++
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999998887654 489999999999865 579999999864
No 238
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=344.63 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=165.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 37 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 45699999999995 4579999999999999999999999999999999999864 499999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++........ ...++++.++++.+++. +..++.+ .+|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA--------LGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--------hhCCHHH
Confidence 124678999999998887899999987532211111 11234567788888874 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G 257 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEG 257 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999888753 689999999999875 69999999864
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.9e-37 Score=325.59 Aligned_cols=188 Identities=28% Similarity=0.419 Sum_probs=163.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999864 23567899999
Q ss_pred cCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++ ..|++||+.+.... ..++++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999775 57999999875321 24567888999999988776655 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HHHhcCEEEEE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSL 647 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i~~~D~Il~l 647 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+.. ....+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999988764 3899999999866 45678888876
No 240
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-37 Score=340.30 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=165.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 37 ~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45799999999995 4679999999999999999999999999999999999997 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|+.||+.++...... ....++++.++++.+++. +..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 1346789999999988878999999875322111 112345688899999985 3344444 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEE-EEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il-~l~~ 649 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|+++ +|++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999999888753 589999999999875 599976 4564
No 241
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=334.21 Aligned_cols=197 Identities=24% Similarity=0.362 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999996 4579999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS--------QLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998875 5999999865322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887754 3899999999999875 69999999864
No 242
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-37 Score=335.83 Aligned_cols=198 Identities=24% Similarity=0.283 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC-c-----c-ccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 467999999999999999999999999999999999994 7999999999964 1 1 23459
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCc-------CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-------~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+|+||++.++. .|+.||+.+....... ......+++.++++.+++. +..++.+. .+||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-------EGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-------cCcCHHHHHH
Confidence 99999998765 4899998764221100 0011235678899999997 45555442 2599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+.. +|++++|+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 9999999999999999999999999999999888765 37999999999999864 7999999864
No 243
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=316.98 Aligned_cols=448 Identities=16% Similarity=0.155 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1064)
Q Consensus 161 ~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~ 239 (1064)
+.+.......+++. ...++|.++.+++..-|+.-+++ ....+..++++|+..++-.+.. +.....+.+ ..+.+
T Consensus 65 s~is~lg~t~~gq~----~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~i-l~l~s 138 (546)
T COG4615 65 SLISQLGLTTLGQH----FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAII-LTLGS 138 (546)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHHH-HHHHH
Confidence 34445556666666 55566777788888888877765 3557889999999987633222 222222222 11222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 001511 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1064)
Q Consensus 240 ~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~ 319 (1064)
.....|+||++.+++.+.+.+..+.-.....+.-+.++...+.+.++......+.++.+..+. +++..+. ...+.+..
T Consensus 139 ~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l-~r~R~~~-~h~~~~~~ 216 (546)
T COG4615 139 AAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTL-NRERAEY-VHNNLYIP 216 (546)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhhee-chHHHHH-HHhhhcCc
Confidence 333456788888777655444433333333344444444455555555555666666666554 3333332 11222222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 320 LTRHMRV-VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 320 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
-.+..++ ....+.+......+.+..+...+++++++.... ++- .+- .+..+.. .+.-+-.|+.+...
T Consensus 217 ~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~-~w~----st~-~a~tivl------vlLflr~pL~s~vg 284 (546)
T COG4615 217 DAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL-GWA----STN-VAATIVL------VLLFLRTPLLSAVG 284 (546)
T ss_pred chHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccc----hhh-HHHHHHH------HHHHHhhHHHHHHh
Confidence 1222221 111111111111222222222333333321100 111 011 1111111 11122245555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEc
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
....+.++..+++++.++-..++....+. + +..+.-..|+++||.|.|++...-+..||++|++||+|-|+|
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~-~-------q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG 356 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPR-P-------QAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIG 356 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCC-C-------CcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEEC
Confidence 66677888999999988644222111110 0 111223469999999999876677889999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
.|||||||+++++.|++.|++|+|.+||.+ +++|+-++-||-|-++|..++ +.. ...+.+.+.
T Consensus 357 ~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e-----~~as~q~i~ 425 (546)
T COG4615 357 GNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPE-----GKASPQLIE 425 (546)
T ss_pred CCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCc-----cCCChHHHH
Confidence 999999999999999999999999999964 467888888999988876443 111 114567788
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA----KVRAMGTSC 628 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~----~l~~~g~Tv 628 (1064)
..|+++.+.+...-..... ....||-|||+|+|+--|++-+-||+++||=-+--||.-++.+++ .++++|+||
T Consensus 426 ~~LqrLel~~ktsl~d~~f---s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 426 KWLQRLELAHKTSLNDGRF---SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHHHHhhhhcccCCcc---cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 8888877765433211100 013699999999999999999999999999999999999998775 457889999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001511 629 ITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.||||-....++||++.++++
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G 524 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNG 524 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcC
Confidence 9999999999999999999875
No 244
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6e-37 Score=329.78 Aligned_cols=193 Identities=27% Similarity=0.296 Sum_probs=166.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--cccccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--~lr~~i~~v~Q~p 522 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .-++.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999986 46799999999999999999999999999999999999999999999999641 1135799999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++..... ..++++.++++.+++++..++.+ .+||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKA--------KQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 699999976432111 23567888999999998877766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEG 200 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999887764 478999999999987 479999999864
No 245
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-37 Score=325.50 Aligned_cols=188 Identities=23% Similarity=0.325 Sum_probs=162.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
+++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999965 2346789999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++ ..|++||+.++.... ..+.++.++++.+++.+..++.+ .+||||||||++||||++.+|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999875 579999998763211 12346788999999987666544 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+...+..+|.-+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999888764 4899999999999998887654
No 246
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-37 Score=336.65 Aligned_cols=199 Identities=20% Similarity=0.260 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1064)
+.|+++||++.|+ +..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4699999999995 457999999999999999999999999999999999999985 8999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhHH----hcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~~----~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+++ ++.+ .+||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSA--------LDLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 246779999999988889999999864321111 0111234577889999886433 3332 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+++|+++||||||++||+.++..+.+.+++ .|.|+|+|||++..+. .||+|++|+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 999999999999999999999999999999998887764 4899999999999875 69999999973
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=337.01 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 56799999999996 45799999999999999999999999999999999999875 79999998853
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcCh
Q 001511 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSG 581 (1064)
..+++.++|+||++.++.+|++||+.++........ ...++++.++++.+++.+ ..++.+ .+|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA--------FNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc--------ccCCH
Confidence 124678999999999888899999987532111111 122456778888888743 333333 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|+|||+++.+. .||++++|+++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999998887653 689999999999885 79999999864
No 248
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.9e-37 Score=331.25 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=165.9
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC---cccccc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~---~~lr~~ 514 (1064)
.+.++||++.|++. +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999764 689999999999999999999999999999999999999 999999999965 245778
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCCC--Cc-CCCCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTSD--QE-VEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~--~~-~~~~~~~~i~~-~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++|+||++.++.. |++||+.++.... .. ......+++.+ .++.+++.+..++.+ .+||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999988775 9999998753211 00 11111223444 788888887766655 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||++ .....+|++++|+++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999888764 488999999998 345689999999874
No 249
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=336.66 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=164.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 689999999995 46799999999999999999999999999999999999987 49999999854 12
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
++++++|+||++.++. .|+.||+.++...... .....++++.++++.+++... .++.+ .+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--------SNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccCh--------hhCCHHH
Confidence 4578999999998876 4999999875321110 111223467788899988532 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||+|++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3689999999999875 69999999874
No 250
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.5e-37 Score=317.13 Aligned_cols=161 Identities=34% Similarity=0.584 Sum_probs=146.8
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
++|++.++..|++||+ ||||||||++|||||+.+|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999988878998886 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999998887754 488999999999998899999999864
No 251
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.7e-37 Score=326.41 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEe
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVP 519 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~ 519 (1064)
..++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4799999999985 4579999999999999999999999999999999999999999999999964 12345799999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+.+...... ...++.+.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99987764 99999976432111 123456678899999987776665 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
++||||||++||+++++.+.+.+++ .|.|+|++||+++.+ ..+|++++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999887754 489999999999987 47899999874
No 252
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.8e-37 Score=325.70 Aligned_cols=174 Identities=25% Similarity=0.302 Sum_probs=147.4
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccEEEEecCC--CCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YTA 525 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i~~v~Q~p--~l~ 525 (1064)
+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+||+| .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 456799999999999999999999999999999999999999999999998541 2356799999998 466
Q ss_pred cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
..|++||+.++............+++.++++.++++++.++.|. +||||||||++|||||+.+|+++|||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH--------CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 78999999875321111111123567889999999988888773 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH
Q 001511 606 TSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 637 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~ 637 (1064)
|++||+.+++.+.+.+++ .|+|+|++||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999998887764 48999999999864
No 253
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=313.01 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=187.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------------- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------------- 508 (1064)
..++++|+.++|. ...+|++|||+.++|+.+.|+|.|||||||++|+|.=|..|+.|+|.++|..
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4689999999994 5679999999999999999999999999999999999999999999999842
Q ss_pred -----ccccccEEEEecCCCCCc-ccHHHHhcCCC-CCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcCh
Q 001511 509 -----SDLNKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 509 -----~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSG 581 (1064)
..+|.+.++|||+..+.. .|+.||+...- ..-+..+.+..++....|.++|+.+..+.||. .|||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--------~LSG 155 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--------HLSG 155 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--------ccCc
Confidence 135789999999988764 69999998642 11122223445677889999999999999994 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEee
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHD 657 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~ 657 (1064)
|||||++|||||+.+|+++++|||||||||+...++++. |.+.|+|.+++||.+..++. ..+++.++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G------- 228 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG------- 228 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc-------
Confidence 999999999999999999999999999999988876654 45679999999999999975 6777777753
Q ss_pred cCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
.+-|.++.+++|.| |..|+.++.+++
T Consensus 229 -------------------------------~iEE~G~P~qvf~n-P~S~RlkqFlss 254 (256)
T COG4598 229 -------------------------------KIEEEGPPEQVFGN-PQSPRLKQFLSS 254 (256)
T ss_pred -------------------------------eecccCChHHHhcC-CCCHHHHHHHHh
Confidence 22344666778876 688888888765
No 254
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.3e-37 Score=334.89 Aligned_cols=195 Identities=24% Similarity=0.326 Sum_probs=162.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC----CccEEEeCCCC---ccc-cccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~l-r~~i 515 (1064)
.++++||++.| ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .+. ++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999999 46799999999999999999999999999999999999999 99999999965 122 3579
Q ss_pred EEEecCCC-CC--cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 516 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 516 ~~v~Q~p~-l~--~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+|+||++. .+ ..|+.+|+.+....... ...++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 35888887653211111 123467888999999976 345554 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998887754 3799999999999875 69999999864
No 255
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=335.89 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCCc----------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS---------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~~---------- 509 (1064)
+.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+-
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 3689999999995 568999999999999999999999999999999999999986 49999999541
Q ss_pred -cccccEEEEecCCCCCc-ccHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001511 510 -DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~L 579 (1064)
.+++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..++.+. +|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~L 153 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS--------TL 153 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc--------cc
Confidence 12457999999998766 699999987532110 0011234568889999999888887663 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||+|++++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999998887764 389999999999975 679999999865
No 256
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-37 Score=331.84 Aligned_cols=196 Identities=27% Similarity=0.388 Sum_probs=167.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999863 38999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|+.||+.++...........++++.++++.+++.++.++.+. +||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE--------TLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998774 7999999875322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||++||+.+++.+.+.+++ .|+|+|++||++..+. .+|++++|+++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G 206 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999887764 3899999999999876 69999999864
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=337.00 Aligned_cols=196 Identities=27% Similarity=0.332 Sum_probs=163.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccc-cccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~l-r~~i~~v~Q 520 (1064)
.++++||++.|++++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999756789999999999999999999999999999999999999999999999964 222 246999999
Q ss_pred CCCC---CcccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 521 RPYT---AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 521 ~p~l---~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++.+ +..++.+|+.++.... . ......++++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--------GELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9864 3457888887542110 0 001122446778899999988877766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEE
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSL 647 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l 647 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999888754 489999999999876 579999777
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.3e-37 Score=317.66 Aligned_cols=164 Identities=29% Similarity=0.434 Sum_probs=148.9
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
|+++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999654 379999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
||+|.++..|++||+ + .+||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999988888998887 2 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 172 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENG 172 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 9999999999999999999888765 389999999999999899999999864
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=333.38 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1064)
..+.+++++++|. +.++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+-
T Consensus 7 ~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4689999999884 56899999999999999999999999999999999999986 799999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.+++.++|+||++.++..|+.||+.++...... .....+++.++++.+++.+.+..... ....+|||||+||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~----~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLK----VSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhh----CCcccCCHHHHHHHHH
Confidence 245679999999998889999999876432111 11234578889999998654322110 1234899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEe
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~ 648 (1064)
||||+++|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||+|++|+
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999988875 378999999999976 4699999997
No 260
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-37 Score=335.53 Aligned_cols=200 Identities=29% Similarity=0.353 Sum_probs=165.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCC------CC------c
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g------~~------~ 509 (1064)
.+.++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ .
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46799999999995 56899999999999999999999999999999999999999997777665 32 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||+|.++. .|+.||+.++........ ....+++.++++.+++.+ ..++.+ ..|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~ 158 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--------SQLSGGQ 158 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc--------ccCCHHH
Confidence 34678999999998876 499999987632211111 112345778899999863 334433 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+.+ .+.|+|++||+++.+ ..||++++|+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g 228 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNG 228 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 368999999999988 579999999864
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=336.74 Aligned_cols=198 Identities=24% Similarity=0.322 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC--------ccEEEeCCCC------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVG------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--------~G~I~i~g~~------~ 509 (1064)
+|+++|+++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ .
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 378999999985 468999999999999999999999999999999999999998 9999999964 1
Q ss_pred cccccEEEEecCCC-CCcccHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++. .+..|++||+.++.... ........+.+.++++.+++.+..++.+ .+||||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~ 151 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGEL 151 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHH
Confidence 34567999999986 46789999998753211 0011123356788999999988777765 48999999
Q ss_pred HHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+ .+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999887754 2899999999999885 79999999864
No 262
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-36 Score=324.19 Aligned_cols=192 Identities=29% Similarity=0.371 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---cccccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~lr~~i~~v~Q 520 (1064)
+++++||++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 479999999996 45799999999999999999999999999999999999999999999999641 25678999998
Q ss_pred CCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++ ..|++||+.+...... ..++++.++++.+|+.++.++.+ .+||||||||++||||++.+|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 87664 5799999976432211 23456889999999988766655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999888764 48999999999999887 99988853
No 263
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-36 Score=327.41 Aligned_cols=197 Identities=24% Similarity=0.302 Sum_probs=161.6
Q ss_pred cEEEEeeEEEcCC------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC--CC--C-c---
Q 001511 444 YIEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP--GV--G-S--- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~--g~--~-~--- 509 (1064)
+|+++||++.|++ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999953 1479999999999999999999999999999999999999999999998 42 2 0
Q ss_pred -----cc-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcCh
Q 001511 510 -----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 -----~l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSG 581 (1064)
+. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.+. .++.+ .+|||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~ 152 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP--------ATFSG 152 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc--------ccCCH
Confidence 11 357999999997664 5999999864321111111224567788999999764 34444 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEe
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 648 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1064)
|||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||+++.+.
T Consensus 153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999999999999999999999887764 4899999999999885 799998764
No 264
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=347.86 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---------ccccc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKE 514 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~lr~~ 514 (1064)
|++ ||++.|.+ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 677 99999953 32 3 9999999999999999999999999999999999999999999854 1 23578
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||++.++. .|++||+.++... ...+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPG--------SLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 999999998875 6999999986431 235678899999999988888884 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999998877654 3899999999998764 69999999864
No 265
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=325.42 Aligned_cols=190 Identities=25% Similarity=0.350 Sum_probs=161.2
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------cccccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~lr~~i 515 (1064)
.+ ||++.|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.+
T Consensus 3 ~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 3 CV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred ee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 45 89999964 444 99999999 99999999999999999999999999999999998541 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|+.||+.++.... .....++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 69999998753221 11123456788999999988777766 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999998887754 3899999999999874 79999999864
No 266
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.1e-36 Score=330.31 Aligned_cols=185 Identities=31% Similarity=0.431 Sum_probs=162.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++|+||++.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 689999999996 46799999999999999999999999999999999999999999999987 347999999987
Q ss_pred CCc---ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 524 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 524 l~~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
++. .|+.+++.+.. ...++++.++++.+++.++.++.+ .+||||||||++|||||+.+|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 653 48888875421 123567888999999998888766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|+|++|++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999998887753 289999999999987 56999999964
No 267
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=333.01 Aligned_cols=198 Identities=23% Similarity=0.252 Sum_probs=161.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCCc--------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~~--------~ 510 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 589999999996 468999999999999999999999999999999999999874 89999999541 3
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+++.++|+||++.++. .|+.||+.++....... .....+.+.+.++.+++.+ ..++. ..+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 154 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQ 154 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHH
Confidence 4568999999998876 59999998643211110 1111234555666676643 22322 358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3699999999999886 69999999875
No 268
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=330.34 Aligned_cols=198 Identities=24% Similarity=0.259 Sum_probs=165.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
+|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 689999999995 46899999999999999999999999999999999999974 89999999954 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPG--------TRLSGGQQQ 153 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh--------hhcCHHHHH
Confidence 467899999999988899999998753211111 11234457778888888542 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..+|++++++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999888765 378999999999975 569999999864
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.6e-36 Score=320.65 Aligned_cols=187 Identities=26% Similarity=0.352 Sum_probs=158.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999964 22457899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|+.||+.+...... ..++++.++++.+++.++.++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9988765 699999986532211 12446788999999998877766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+...+.. ++.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999999888764 48999999999865433 4444
No 270
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=330.47 Aligned_cols=199 Identities=22% Similarity=0.254 Sum_probs=164.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~-------- 509 (1064)
.+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+-
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4689999999996 4679999999999999999999999999999999999975 4 599999999631
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.+|+.++........ ...++++.++++.+++. +..++.+ .+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA--------LSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCc--------ccCCHHHH
Confidence 24578999999998887899999987532111111 11234566778888764 2333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999875 69999999865
No 271
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=333.93 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=166.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999995 46799999999999999999999999999999999999884 89999999864
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA--------FGLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--------ccCCHHH
Confidence 13467899999999888789999998753221110 11123557788888888643 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3789999999999874 69999999864
No 272
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-36 Score=346.08 Aligned_cols=189 Identities=22% Similarity=0.288 Sum_probs=162.4
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------cccccEEEE
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~lr~~i~~v 518 (1064)
||++.|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78898853 34 4 99999999999999999999999999999999999999999999541 235689999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++. .|++||+.++..... ....++++.++++.+++.++.++.|. +||||||||++|||||+.+|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLPG--------RLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 99998876 599999998643211 11224568889999999988888774 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998887754 3899999999999875 69999999875
No 273
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=311.11 Aligned_cols=161 Identities=30% Similarity=0.465 Sum_probs=145.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999864 579999999999999999999999999999999999999999999999964 23467899999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+. ||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99987764 8888863 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999888764 3789999999999876 79999999864
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=329.05 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=164.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC-c-------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-S-------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-~-------~ 510 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ . .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999985 4679999999999999999999999999999999999864 489999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+++.++|+||++.++..|+.||+.++....... .....+++.++++.+++.+.+....+ ....+||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh----CCcccCCHHHHHHHHH
Confidence 467899999999988889999998753221111 11133567788999998643322110 1135899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G 221 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNG 221 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 9999999999999999999999999999888765 3789999999999775 58999999764
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.8e-36 Score=329.10 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=154.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe-cCCCCC-cccH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 529 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~-Q~p~l~-~~Ti 529 (1064)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+| |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4579999999999999999999999999999999999999999999999864 23467899998 556554 5799
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
+||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976432111111112345677889999987777655 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 610 TTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 610 D~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 230 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999887764 2789999999999874 69999999864
No 276
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-37 Score=303.19 Aligned_cols=186 Identities=27% Similarity=0.404 Sum_probs=162.0
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccH
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 529 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti 529 (1064)
++.++|+++||++.+||.++|+||||||||||+|+++-|.+|++|++.+.|.+ +.+|.+|+||.|.|.+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45789999999999999999999999999999999999999999999999976 467999999999999999999
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
.||+.||-..+.. ..+.....+.++++++.+.+-..+ ..+||||||||+||+|-|.--|+||+||||||||
T Consensus 94 eDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999998654322 235667888999999976433222 2479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HhcCcEEEEEccChhH-HHhcCEEEEEeCC
Q 001511 610 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDGE 650 (1064)
Q Consensus 610 D~~~~~~l~~~l----~~~g~TvI~ItH~l~~-i~~~D~Il~l~~~ 650 (1064)
|+.+.+.+.+++ ++++..+++||||... ++++|+++-+..+
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G 210 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPG 210 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccC
Confidence 999888766654 5678999999999987 7899999998764
No 277
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.4e-35 Score=328.08 Aligned_cols=192 Identities=25% Similarity=0.395 Sum_probs=164.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeCc
Confidence 467999999985 35799999999999999999999999999999999999999999999988 59999999
Q ss_pred CCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc--c-CCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--I-NWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~--~-~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
++++..|++||+.++... ...++.++++.+++.+.++..|.... . ..+.+||||||||++|||||+.+|+
T Consensus 107 ~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999889999999875321 12345567778888887777664322 1 2356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l-~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++||||||++||+.++..+.+.+ ++ .+.|+|++||+++.+..||++++|+++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999887643 32 489999999999999899999999875
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-36 Score=364.47 Aligned_cols=199 Identities=27% Similarity=0.352 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEcCC----------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--
Q 001511 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-- 509 (1064)
..++++||++.|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ .
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 47999999999952 3579999999999999999999999999999999999995 89999999954 1
Q ss_pred ------cccccEEEEecCCC--CC-cccHHHHhcCCCCCCC--cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCC
Q 001511 510 ------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ------~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~ 577 (1064)
.++++++||||++. ++ ..|+.||+.++..... ......++++.++++.+++. +..++.|.
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 424 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA-------- 424 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc--------
Confidence 12567999999983 44 4699999987532110 11112245678899999996 56777664
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 8999999999999999999999999999999999999999888763 3899999999999875 69999999864
No 279
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-36 Score=309.62 Aligned_cols=161 Identities=38% Similarity=0.645 Sum_probs=145.8
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999653 379999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+||++.++..|+.||+ ||||||||++||||++.+|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988878888876 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+...+.+.+++. ++|+|++||+++.+..||++++|+++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCC
Confidence 999999999999999999998887653 78999999999998889999999864
No 280
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.5e-36 Score=325.66 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=152.8
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCCCc-ccHHHHhcCCCC
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 538 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~ 538 (1064)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||++.++. .|+.||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999964 122234589999998776 699999987521
Q ss_pred C--CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 539 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 539 ~--~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
. .........+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 1 11111122345788999999998877766 3899999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9887754 3899999999999865 69999999864
No 281
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-36 Score=310.63 Aligned_cols=163 Identities=29% Similarity=0.373 Sum_probs=145.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------ccccccEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------~~lr~~i~ 516 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 12457899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||+|.++. .|++||+.+. ||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998764 5999987642 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ . |+|+|++||+++.+. .+|++++|+++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999887754 3 799999999999887 69999999864
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=333.74 Aligned_cols=200 Identities=21% Similarity=0.281 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 347999999999964 679999999999999999999999999999999999986 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCC------------cC-CCCCHHHHHHHHHhcCChh----HHhcCCCCc
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------------EV-EPLTHGGMVELLKNVDLEY----LLDRYPPEK 571 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------------~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~ 571 (1064)
..+++.++|+||++.++..|++||+.++..... .. ....++++.++++.+++.+ ..++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 124578999999998888899999987532110 00 0112456778889998853 333333
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEE-EE
Q 001511 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SL 647 (1064)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il-~l 647 (1064)
.+||||||||++|||||+++|++|||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||+++ +|
T Consensus 199 -----~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 199 -----LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 489999999999999999999999999999999999999999888753 689999999999875 699975 56
Q ss_pred eCC
Q 001511 648 DGE 650 (1064)
Q Consensus 648 ~~~ 650 (1064)
+++
T Consensus 274 ~~G 276 (305)
T PRK14264 274 TGG 276 (305)
T ss_pred cCC
Confidence 653
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=359.80 Aligned_cols=199 Identities=25% Similarity=0.347 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~-lr~~i 515 (1064)
++|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- . .++.+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3689999999995 46799999999999999999999999999999999999999999999999541 1 24679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCC---cC-CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ---EV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~-~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+|+||++.++. .|++||+.++..... .. .....+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la 153 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV--------GELSIGEQQMVEIA 153 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHH
Confidence 99999987664 599999988643210 00 1112356788999999988777766 38999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|++|||||||++||+.++..+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999998877654 4899999999999875 69999999864
No 284
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-36 Score=359.24 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCCc-------cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~~-------~lr~ 513 (1064)
++|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+- ..++
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4699999999995 56899999999999999999999999999999999999996 899999999641 1246
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCC--Cc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.++||||++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~l 154 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEI 154 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHH
Confidence 7999999997765 59999998864321 10 11112356788999999987777766 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G 219 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999998887754 4899999999999875 69999999864
No 285
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.4e-37 Score=310.57 Aligned_cols=199 Identities=22% Similarity=0.272 Sum_probs=170.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
+.+..+|+.++|. ++++++||||+|++||+||+.||||+||||.+.++.|+.+|++|+|.+||.| ..-|..|
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 3578999999994 6789999999999999999999999999999999999999999999999987 2335689
Q ss_pred EEEecCCCCCcc-cHHHHhcCCCCCCCcCCC--CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~--~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
||+||+|.+|.+ ||.|||............ +..+++.++|+.+++.+..++.. .+||||||+|+.||||
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--------~sLSGGERRR~EIARa 153 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--------YSLSGGERRRVEIARA 153 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--------cccccchHHHHHHHHH
Confidence 999999999975 999999865544322211 33456778999999999877753 5899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1064)
|+.+|++++||||++|+||.+...++++ |++.|..|++.-|+.. ++..|||.+++..+
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G 215 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDG 215 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecC
Confidence 9999999999999999999988777665 5567999999999875 67899999999864
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-36 Score=358.00 Aligned_cols=199 Identities=21% Similarity=0.305 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~lr~~i 515 (1064)
+.++++||++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4699999999995 46799999999999999999999999999999999999999999999998541 235789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC--Cc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+||||++.++. .|+.||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lar 153 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHH
Confidence 99999997765 59999999864211 10 11122456788999999976666655 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999887764 4899999999999875 69999999864
No 287
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-35 Score=313.06 Aligned_cols=185 Identities=20% Similarity=0.259 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccc-cccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL-NKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~l-r~~i~~v~Q~p 522 (1064)
++++|+++.|+ ++.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ... ++.++|++|++
T Consensus 2 l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 78999999995 345554 999999999999999999999999999999999999999999965 111 34699999987
Q ss_pred CC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.+ +..|++||+.+..... ..++++.++++.+++.+..++.+ .+||||||||++||||++++|+++|
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 5689999998753221 13456778899999988777655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEE
Q 001511 602 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~I 644 (1064)
|||||++||+.+++.+.+.++ +.|.|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999988775 3589999999999999888765
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-35 Score=358.95 Aligned_cols=200 Identities=26% Similarity=0.372 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-c----
Q 001511 443 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-S---- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-~---- 509 (1064)
++++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999964 25799999999999999999999999999999999999986 79999999964 1
Q ss_pred ----ccc-ccEEEEecCCC--C-CcccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCC
Q 001511 510 ----DLN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ----~lr-~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~ 577 (1064)
..| ++++|+||+|. + +..|+.+|+.++... .........+++.++++.+|+.+ ..++.| .
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------H 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------c
Confidence 122 57999999985 3 345899998753211 11111123467888999999975 356666 3
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 8999999999999999999999999999999999999999887764 3899999999999875 69999999964
No 289
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=356.89 Aligned_cols=199 Identities=24% Similarity=0.246 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 1 123579
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC----Cc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD----QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~----~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+||||++.++. .|++||+.++.... .. ......+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv 154 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQML 154 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHH
Confidence 99999987765 59999998754211 10 00112356788999999987777766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887754 4899999999999875 69999999864
No 290
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-35 Score=355.73 Aligned_cols=195 Identities=22% Similarity=0.372 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . . .+..+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999854 1 1 13469
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|+.||+.++.... ...++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccc----hHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999997765 59999999864321 123467888999999987777766 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999875 69999999864
No 291
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-35 Score=310.06 Aligned_cols=163 Identities=26% Similarity=0.377 Sum_probs=144.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
+.++++|+++.| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 3 ~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 368999999987 8999999999999999999999999999999999999999999999964 1 235689
Q ss_pred EEEecCC----CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRP----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p----~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+|+||++ ..+..|++||+.++.. ||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~ 117 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLAR 117 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHH
Confidence 9999995 2445799999875310 8999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 118 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 118 WLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred HHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 99999999999999999999999999887764 3899999999998775 59999999864
No 292
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-35 Score=322.02 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=163.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-c-----cccc-
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----DLNK- 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~lr~- 513 (1064)
..++++||++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3699999999996 45799999999999999999999999999999999998 68999999999864 1 1222
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCC---cCCC----CCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQ---EVEP----LTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~~~----~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.++|+||++.++. .|+.+|+.+...... .... ...+++.++++.+++. ...++.|. .+||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LSgG~~ 157 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-------EGFSGGEK 157 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-------cCCCHHHH
Confidence 4889999998765 488999875422110 0000 1124567889999997 45666552 25999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+.. +|++++|+++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 999999999999999999999999999999999887764 48999999999998864 8999999864
No 293
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-36 Score=316.19 Aligned_cols=199 Identities=27% Similarity=0.369 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..+++++|+++| ++-.+++||||++++||+++|+|||||||||++++|+|+|+|++|+|.++|.+ .-.|..|
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 357899999999 57789999999999999999999999999999999999999999999999976 1125678
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC------------CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~------------~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
+--||.+-+|. .|+.||+..+.... ...+.+..+++.++|+.+||.+..++.. .+||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--------~~LsyG 153 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--------GNLSYG 153 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--------hcCChh
Confidence 88899998875 59999998763211 0012234577888999999999888754 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+|+.|||||+.+|++|+||||.+||.++...++.+.+++ .|.|+++|.||+..+. .||||+||+.+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCC
Confidence 99999999999999999999999999999988888776654 3699999999999875 79999999865
No 294
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-35 Score=311.40 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=149.0
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC--ccccccEE
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~--~~lr~~i~ 516 (1064)
.|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ..+++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999974 267999999999999999999999999999999999986 4899999999965 34567899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~----------------~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL----------------LR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH----------------Hh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999997765 599999975310 00 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEG 651 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g 651 (1064)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++. ...+|++++|+++|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 9999999999999999999999887764 48999999999983 56899999998644
No 295
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.8e-35 Score=311.99 Aligned_cols=170 Identities=31% Similarity=0.452 Sum_probs=149.2
Q ss_pred cEEEEeeEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC---ccccc
Q 001511 444 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG---SDLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~-----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~---~~lr~ 513 (1064)
.++++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ...++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 368999999999999999999999999999999999999 9999999999975 24567
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.++|+||++.++. .|++||+.++.. + .+||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~---------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------L---------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------h---------------------ccCCHHHHHHHHHHHH
Confidence 8999999998765 599999864310 0 0499999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i-~~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++ .+ ..+|++++|+++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999998887764 4899999999996 44 579999999874
No 296
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=302.94 Aligned_cols=198 Identities=26% Similarity=0.346 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+.+|++++- .++.+|+++||++++||.++|+||||+|||||+|+|+|...|++|++.++|.+ .++.++-+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 47889999876 46789999999999999999999999999999999999999999999999986 345577899
Q ss_pred EecCCCC-CcccHHHHhcCCCCCCCcCCC-CCHH-HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEP-LTHG-GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~-~~~~-~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||+..+ |.-|+.|.+.++...+....+ ..++ -+.+++..+++..+..+.- .+|||||||||.+||.|.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999875 788999999998765433222 1233 3667999999999988753 379999999999999997
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
. ++++|+||||||+||...+..++++.++ .|..|+.|-||+++. .+||+|++|.++
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~G 217 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCC
Confidence 5 4569999999999999999998887665 589999999999986 489999999875
No 297
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.3e-35 Score=318.81 Aligned_cols=199 Identities=27% Similarity=0.334 Sum_probs=154.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCCc------c-cccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~~------~-lr~~ 514 (1064)
+|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+- . .+..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 378999999996 467999999999999999999999999999999999994 69999999999651 1 2356
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCC---CCcCCC----CCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEP----LTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~---~~~~~~----~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++|++|++.++.. |..+++...... ...... ...+.+.+.++.+++. ++.++.+ ..+|||||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~q 152 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-------NVGFSGGEKK 152 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC-------CCCCCHHHHH
Confidence 9999999876542 444443221100 000000 1134456778888884 3333332 1369999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
|++||||++++|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. +|+|++|+++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 99999999999999999999999999999998886653 47999999999998875 8999999764
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.6e-35 Score=308.71 Aligned_cols=163 Identities=34% Similarity=0.486 Sum_probs=142.0
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------cccccEEEEe
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYVP 519 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~lr~~i~~v~ 519 (1064)
+++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+|
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999964 6799999999999999999999999999999999999999999999998531 1234466666
Q ss_pred cCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 520 Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
| +++.+++.++.++.+ .+||||||||++|||||+.+|++
T Consensus 80 q---------------------------------~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 80 Q---------------------------------ALELLGLAHLADRPF--------NELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred H---------------------------------HHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 677888887776655 48999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.+.+.+.+.+++ . +.|+|++||+++.+ ..+|++++++++
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 174 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDG 174 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999998887754 3 78999999999987 679999999864
No 299
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.9e-35 Score=317.34 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=155.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC-C
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP-Y 523 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p-~ 523 (1064)
+.++|+++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +....+.. +
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~------~~~~~~~~~~ 95 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSLLGLGGGF 95 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE------chhhcccccC
Confidence 67888888874 4689999999999999999999999999999999999999999999999953 11111122 2
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEe
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLD 603 (1064)
.+..|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|+++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV--------KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345799999986532111111122345778889999988777765 389999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 604 ECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 604 EPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 218 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKG 218 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999998887754 3789999999999875 69999999864
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=352.57 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=163.9
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEe
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVP 519 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~ 519 (1064)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368899985 4679999999999999999999999999999999999999999999999964 12356799999
Q ss_pred cCCCCC-cccHHHHhcCCCCCC-Cc--CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~-~~--~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++.++ ..|++||+.++.... .. ......+++.++++.+++.+..++.+ .+|||||||||+|||||+.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 998765 469999998764211 10 11112346778899999987666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|++|||||||++||+.+..++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G 210 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887754 4899999999999875 69999999864
No 301
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.1e-35 Score=318.17 Aligned_cols=183 Identities=31% Similarity=0.393 Sum_probs=151.0
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC----CccEEEeCCCC---ccc-cccEEEEecCCC--CC-ccc
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEIFYVPQRPY--TA-VGT 528 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~l-r~~i~~v~Q~p~--l~-~~T 528 (1064)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .+. ++.++|++|++. ++ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 89999999965 122 358999999984 32 359
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
+.+|+.+.............+++.++++.+++. +..++.+ .+||||||||++||||++.+|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999886542211111112345688899999997 4555544 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 202 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDG 202 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999998887654 3789999999999885 69999999864
No 302
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-35 Score=309.77 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=147.5
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC-----cccc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG-----SDLN 512 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~-----~~lr 512 (1064)
.+.++||+|.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999974 4679999999999999999999999999999999999999 899999999964 1346
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+.++|+||++.++. .|++||+.++... . .++.+ .+||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------~~~~~--------~~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC----------------K-------GNEFV--------RGISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh----------------c-------cccch--------hhCCHHHHHHHHHHH
Confidence 78999999987765 5999999764210 0 12222 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEE-ccChhHH-HhcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITI-SHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~I-tH~l~~i-~~~D~Il~l~~~ 650 (1064)
||+++|+++||||||++||+.+++.+.+.+++ . +.|+|++ +|+.+.+ +.+|++++|+++
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 99999999999999999999999998887764 2 5676665 5555554 679999999874
No 303
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-35 Score=304.26 Aligned_cols=198 Identities=22% Similarity=0.312 Sum_probs=161.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
.+++++||+..|. ..++|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|.| ...|..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4689999999984 5789999999999999999999999999999999999999999999999976 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+||||.-.+|. .||.||+..+...... +......++++.+.+- |.+..++ .+.+|||||||-+||||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~--------~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQ--------RAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcC--------cccCCChHHHHHHHHHHHH
Confidence 99999998775 6999999976433211 0111112444544442 2333332 3568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|++|+|||||.||-|...++|.+.+++ .|.||++|.++...+ +.+|+.++|+++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~G 213 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCC
Confidence 999999999999999999999998877653 378999999999876 579999999975
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.5e-35 Score=352.93 Aligned_cols=197 Identities=26% Similarity=0.317 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCC----------------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 506 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g---------------- 506 (1064)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|++ +|++|+|.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 468999999999999999999999999999999999997 79999999872
Q ss_pred -------CC----------------ccccccEEEEecC-CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 507 -------VG----------------SDLNKEIFYVPQR-PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 507 -------~~----------------~~lr~~i~~v~Q~-p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
.+ ..+++.++|+||+ +.++ ..|+.||+.++...........++++.++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0135679999998 4454 469999998754221111112345788899999999
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001511 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1064)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1064)
++.++.|. +|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.
T Consensus 160 ~~~~~~~~--------~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIAR--------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 88888774 8999999999999999999999999999999999999998776643 48999999999998
Q ss_pred HH-hcCEEEEEeCC
Q 001511 638 VA-FHDVVLSLDGE 650 (1064)
Q Consensus 638 i~-~~D~Il~l~~~ 650 (1064)
+. .||+|++|+++
T Consensus 232 ~~~~~d~i~~l~~G 245 (520)
T TIGR03269 232 IEDLSDKAIWLENG 245 (520)
T ss_pred HHHhcCEEEEEeCC
Confidence 85 69999999864
No 305
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.8e-35 Score=350.39 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCC-c------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~-~------~lr~~i 515 (1064)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ . ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999995 46799999999999999999999999999999999999987 79999999964 1 124679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+||||++.++. .|+.||+.++..... .......+++.++++.+++.+.. ++.+ .+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999987654 599999987643210 00111235677899999997643 3434 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G 217 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999887654 5899999999999875 69999999864
No 306
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.1e-35 Score=351.23 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=165.7
Q ss_pred CcEEEEeeEEEcCC----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC----c----
Q 001511 443 NYIEFSGVKVVTPT----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG----S---- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~----~---- 509 (1064)
++++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 47999999999952 2579999999999999999999999999999999999999999999995 521 0
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-----HHhcCCCCcccCCCCCc
Q 001511 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-----LLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 ----~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-----~~~~~p~~~~~~~g~~L 579 (1064)
..+++++|+||++.++. .|+.||+.++.... ......++++.++++.+++.+ +.++.| .+|
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~L 428 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKAEEILDKYP--------DEL 428 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh--------hhC
Confidence 13467999999987665 69999998642111 111112356778999999964 566666 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999887743 4899999999999875 69999999864
No 307
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.2e-35 Score=318.95 Aligned_cols=190 Identities=24% Similarity=0.314 Sum_probs=158.4
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEe
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~ 519 (1064)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.+ ..+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46677763 289999999999999999999999999999999999965 8999999964 12346799999
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc---
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--- 595 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--- 595 (1064)
|++.+ +..|+.+|+.++.... .......+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDK-TRTEAVASALNEVAEALGLDDKLGRSV--------NQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ccCccCCCccHHHHHHhcCccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcccc
Confidence 99854 4679999998764221 111122456788999999988777766 3899999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 ----KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ----~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 209 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999998887754 489999999999965 579999999875
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.5e-35 Score=349.14 Aligned_cols=190 Identities=22% Similarity=0.245 Sum_probs=163.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+.++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 589999999996 4569999999999999999999999999999999999999999999998853 123456999
Q ss_pred EecCCCC---------CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 518 VPQRPYT---------AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 518 v~Q~p~l---------~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+||++.. +..|+++|+..+. ..++++.++++.+++++..++.+. +||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRFK--------YLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCcc--------cCCHHHHHHHH
Confidence 9998753 1347888775431 234678889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.+.+++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G 211 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADC 211 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999998887765 3899999999999875 69999999864
No 309
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-35 Score=290.54 Aligned_cols=198 Identities=26% Similarity=0.370 Sum_probs=172.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------------ccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------~~l 511 (1064)
.|+++|+++.| +...+|.||+|+.+.||.+.+.||||+|||||+|.|.=+.-|.+|+..+-|.. .++
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 37899999988 45679999999999999999999999999999999999999999999987742 257
Q ss_pred cccEEEEecCCCCC-cccHHHHhcCC-CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTA-VGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~-~~Ti~eni~~~-~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|+++|+|||.-.+. ..||-||+... ....+..+.....+..++|+++.+.++.+++|. .|||||+|||||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl--------hlsggqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce--------ecccchhhhHHH
Confidence 89999999998775 57999999863 222233333455678899999999999999996 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|++|++||||++|||+...++.+.+++ .|+|-+++||..+.++ .+.+++.|+++
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g 217 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecC
Confidence 9999999999999999999999999988777765 5999999999999886 58999999875
No 310
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-34 Score=316.93 Aligned_cols=182 Identities=26% Similarity=0.320 Sum_probs=153.8
Q ss_pred EcCCCCeeeeeceEEEe-----CCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC-Cc
Q 001511 453 VTPTGNVLVENLTLKVE-----PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-AV 526 (1064)
Q Consensus 453 ~y~~~~~~L~~vsl~i~-----~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l-~~ 526 (1064)
.|++..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+||++.. +.
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------~i~~~~q~~~~~~~ 75 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------TVSYKPQYIKADYE 75 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------eEEEecccccCCCC
Confidence 46655567788888886 79999999999999999999999999999999999984 69999999874 57
Q ss_pred ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 527 GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 527 ~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
.|+.||+.+...... ...+...++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 76 ~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 76 GTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREV--------PELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 899999975432110 11234667899999988877766 389999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 607 SAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
++||+.++..+.+.+++ .++|+|+|||+++.+. .||++++|+++.+
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 99999999998887764 3899999999999886 6999999987643
No 311
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-34 Score=306.91 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=142.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-c-----c-ccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999996 46799999999999999999999999999999999999 58999999999964 1 1 23469
Q ss_pred EEEecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||+|.++.+ ++++++ +..+ .+||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~--------~~LS~G~~qrv~laral~ 120 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------------RYVN--------EGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------------hhcc--------ccCCHHHHHHHHHHHHHh
Confidence 999999977654 444443 1122 269999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH--hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA--FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDG 181 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999888764 3899999999999987 69999999864
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-35 Score=350.47 Aligned_cols=200 Identities=21% Similarity=0.259 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-CCccEEEeCCCC-------cccc
Q 001511 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-LVSGHIAKPGVG-------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p~~G~I~i~g~~-------~~lr 512 (1064)
..|+++||++.|+. ++++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46999999999852 4579999999999999999999999999999999999998 599999999854 1234
Q ss_pred ccEEEEecCCC---CC-cccHHHHhcCCCCC-C-C---cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001511 513 KEIFYVPQRPY---TA-VGTLRDQLIYPLTS-D-Q---EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 513 ~~i~~v~Q~p~---l~-~~Ti~eni~~~~~~-~-~---~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGG 582 (1064)
+.++|+||++. ++ ..|+.||+.++... . . .......+++.++++.+++. +..++.+ .+||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 409 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI--------ARLSGG 409 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc--------ccCCHH
Confidence 67999999962 44 56999999875311 0 0 00111235678899999996 4666666 389999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.+++.+.+.++ +.|.|+|+||||++.+. .||++++|+++
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999887765 35899999999999875 69999999864
No 313
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.4e-35 Score=292.84 Aligned_cols=227 Identities=22% Similarity=0.320 Sum_probs=184.7
Q ss_pred cEEEEeeEEEcCCC--------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----cc
Q 001511 444 YIEFSGVKVVTPTG--------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~--------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~ 510 (1064)
.++++|+++.|... ..+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|.+||.. .+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 46788888866421 358999999999999999999999999999999999999999999999964 22
Q ss_pred c-cccEEEEecCCCC---CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 511 L-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
. .++|-++||||.. |...|..-+..|...... .+....+++.+.|+.+||- +..+-+|+ .||.|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~--------~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH--------MLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh--------hcCchhH
Confidence 2 3789999999963 334566656666553322 2234567889999999984 66666674 7999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKR 659 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~ 659 (1064)
||||+||||+.+|+|+|.||+..+||...+.++.++ .++.|.+.|.|+.++..+++ +|.|+||+++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG--------- 226 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG--------- 226 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecC---------
Confidence 999999999999999999999999999999887664 34569999999999999986 8999999864
Q ss_pred CCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCC
Q 001511 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1064)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1064)
+++|.+.+.+++.. |.|+.|+.|+.+--
T Consensus 227 -----------------------------~vvE~G~t~~v~a~-P~~~~TkRlieShF 254 (267)
T COG4167 227 -----------------------------EVVERGSTADVLAS-PLHELTKRLIESHF 254 (267)
T ss_pred -----------------------------ceeecCChhhhhcC-CccHHHHHHHHHHh
Confidence 24555667777765 89999999998643
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=356.15 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----cc---
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL--- 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~l--- 511 (1064)
+++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 68999999999642 479999999999999999999999999999999999999999999999965 1 11
Q ss_pred -cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 -NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 -r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++.++|+||++.++. .|+.||+.++...........++++.++++.+++.+..++.|. +|||||+||++|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~--------~LS~Gq~qrv~L 155 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS--------QLSGGQQQRVSI 155 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcc--------cCCHHHHHHHHH
Confidence 468999999999875 5999999874321111111234567889999999988888774 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G 219 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998887754 489999999999999899999999874
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-34 Score=350.03 Aligned_cols=194 Identities=21% Similarity=0.328 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
.+|+++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..|+||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 4799999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCc-ccHHHHhcCCCCCC--------------CcCC----------------------CCCHHHHHHHHHhcCChhHHh
Q 001511 523 YTAV-GTLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 565 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~--------------~~~~----------------------~~~~~~i~~~l~~~~L~~~~~ 565 (1064)
.++. .|+.||+.++.... .... ...++++.++++.+|+.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 8765 59999998753100 0000 011345677788888853 34
Q ss_pred cCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEE
Q 001511 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 644 (1064)
Q Consensus 566 ~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~I 644 (1064)
+.+ .+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .+|+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 433 489999999999999999999999999999999999999999999987789999999999886 68999
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
++|+++
T Consensus 231 ~~l~~g 236 (556)
T PRK11819 231 LELDRG 236 (556)
T ss_pred EEEeCC
Confidence 999964
No 316
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=348.72 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=163.7
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+
T Consensus 264 ~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 4799999998652 48999999999999999999999999999999999999999999999853 1235679
Q ss_pred EEEecCC---CCC-cccHHHHhcCCCCCC--------Cc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 516 FYVPQRP---YTA-VGTLRDQLIYPLTSD--------QE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 516 ~~v~Q~p---~l~-~~Ti~eni~~~~~~~--------~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
+||||++ .++ ..|+.||+.++.... .. ......+++.++++.+++. +..++.|. +|||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------~LSg 412 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT--------ELSG 412 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc--------cCCh
Confidence 9999984 344 469999998753210 00 0111224577899999996 66777663 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 485 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEG 485 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999888754 4899999999998774 79999999864
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=347.09 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=163.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..|+|+||++.
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~ 74 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQF 74 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCC
Confidence 378999999995 568999999999999999999999999999999999999999999999873 46999999987
Q ss_pred CCc-ccHHHHhcCCCCC-----------CCcC---------------------CCCCHHHHHHHHHhcCChhHHh-cCCC
Q 001511 524 TAV-GTLRDQLIYPLTS-----------DQEV---------------------EPLTHGGMVELLKNVDLEYLLD-RYPP 569 (1064)
Q Consensus 524 l~~-~Ti~eni~~~~~~-----------~~~~---------------------~~~~~~~i~~~l~~~~L~~~~~-~~p~ 569 (1064)
++. .|+.||+.++... .... ....++++.++++.+|+.+... +.+
T Consensus 75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 153 (530)
T PRK15064 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM- 153 (530)
T ss_pred cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch-
Confidence 664 5999999865310 0000 0012356778899999976443 333
Q ss_pred CcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEe
Q 001511 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLD 648 (1064)
Q Consensus 570 ~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1064)
.+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.|.|+|+||||++.+. .||+|++|+
T Consensus 154 -------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 154 -------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred -------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 489999999999999999999999999999999999999999999888999999999999875 699999999
Q ss_pred CC
Q 001511 649 GE 650 (1064)
Q Consensus 649 ~~ 650 (1064)
++
T Consensus 227 ~g 228 (530)
T PRK15064 227 YG 228 (530)
T ss_pred CC
Confidence 64
No 318
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=306.86 Aligned_cols=198 Identities=27% Similarity=0.354 Sum_probs=172.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccccccEEEEecC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~lr~~i~~v~Q~ 521 (1064)
.+++++|+++| +++.+++|+||++++|++.|++||||+||||++|+|+|+++|++|+|.++|.+ ...+.+|||+|.+
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 47899999998 46789999999999999999999999999999999999999999999999975 4556799999999
Q ss_pred CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
--+. ..|+.|++.|-....+....+...++..+|+++++.....+.. .+||-|.+|+|.+--+++|+|+++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI--------k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI--------KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH--------HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 8775 5799999998765555444455667788889888876544433 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||+|||||.+.+.+.+.+ ++.|.|||++||+++-++ .||++++|+++
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG 206 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKG 206 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCC
Confidence 999999999999999888765 456999999999999886 69999999875
No 319
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=333.02 Aligned_cols=199 Identities=27% Similarity=0.365 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
+.++++|++++|+ +.++|+||||++.+||+++|+|+||||||||+|+|+|.|+|++|+|.++|.. +.....|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4789999999995 5789999999999999999999999999999999999999999999999964 2345689
Q ss_pred EEEecCCCC-CcccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYT-AVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l-~~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++|+|++.+ ++.||.|||.++...... ..+...++..++|+.+++....+. ...+||+||||-|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~--------~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT--------LVGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhh--------hhhhCCHHHHHHHHHH
Confidence 999999986 467999999887654321 112234567778888888511222 1248999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||+..+++++|||||||+|+....+.+++.+ ++.|.++|+||||++.+ +.||+|.||.++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 9999999999999999999998888877665 45799999999999987 479999999865
No 320
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=288.40 Aligned_cols=223 Identities=21% Similarity=0.349 Sum_probs=178.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----------c-
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----------S- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----------~- 509 (1064)
.+.++++++++.|. +....+||||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-.+ .
T Consensus 4 ~PLL~V~~lsk~Yg-~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYG-PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhC-CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 35789999999885 4568999999999999999999999999999999999999999999886432 0
Q ss_pred ---cccccEEEEecCCCC--C-----cccHHHHhcC-CCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCC
Q 001511 510 ---DLNKEIFYVPQRPYT--A-----VGTLRDQLIY-PLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~l--~-----~~Ti~eni~~-~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~ 577 (1064)
-+|..-|||.|+|-- - .+.|.|-+.- +....+ ...++..+.|+++.++ +.++..| .
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~P--------r 150 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLP--------R 150 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcc--------c
Confidence 135678999999941 1 1344444321 222111 2345677889999886 4566666 4
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
.+|||||||+.|||-|+..|+++++||||.+||...++.++++++ +.|..++++|||+..++ .+|+..+|..
T Consensus 151 tFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~--- 227 (258)
T COG4107 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ--- 227 (258)
T ss_pred ccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC---
Confidence 899999999999999999999999999999999999999988775 46999999999999987 4777766654
Q ss_pred eEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcC
Q 001511 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716 (1064)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~ 716 (1064)
|+++|.+.+++++.+ |.|||||-|.+++
T Consensus 228 -----------------------------------g~vve~GLTDrvLDD-P~hPYTQLLVSsv 255 (258)
T COG4107 228 -----------------------------------GQVVESGLTDRVLDD-PHHPYTQLLVSSV 255 (258)
T ss_pred -----------------------------------CCEeccccccccccC-CCCchHHHHHHHh
Confidence 445667788888875 7999999999875
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.8e-34 Score=293.09 Aligned_cols=147 Identities=35% Similarity=0.455 Sum_probs=130.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999853 0 12345666
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|| ||||||||++||||++.+|
T Consensus 80 ~~q----------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 80 VYQ----------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEe----------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 666 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888764 3899999999999764 69999999864
No 322
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-34 Score=346.06 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCC-------cccc
Q 001511 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG-------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~-------~~lr 512 (1064)
..++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+ ..++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 46999999998842 35799999999999999999999999999999999999985 89999999854 1235
Q ss_pred ccEEEEecCC---CC-CcccHHHHhcCCCCC-C-C---cCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChH
Q 001511 513 KEIFYVPQRP---YT-AVGTLRDQLIYPLTS-D-Q---EVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 513 ~~i~~v~Q~p---~l-~~~Ti~eni~~~~~~-~-~---~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGG 582 (1064)
++++|+||++ .+ +..|+++|+.++... . . .......+++.++++.+++.+ ..++.+ .+||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 407 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--------GRLSGG 407 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--------ccCCHH
Confidence 6899999996 24 456999999875321 0 0 000112346778999999863 456655 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++|||++.+. .||++++++++
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998876543 5899999999999875 69999999864
No 323
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4e-34 Score=308.16 Aligned_cols=174 Identities=28% Similarity=0.349 Sum_probs=147.3
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCC---CcccHHHHhcCCCCCC-
Q 001511 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSD- 540 (1064)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~- 540 (1064)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.+++++|+||++.+ +..|+.||+.++....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999975 2346789999999865 3479999998753211
Q ss_pred C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001511 541 Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617 (1064)
Q Consensus 541 ~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l 617 (1064)
. ......++++.++++.+++.++.++.+ .+||||||||++|||||+++|+++||||||++||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPV--------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 011123456888999999988777766 37999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCcEEEEEccChhHHH-hcCEEEEE
Q 001511 618 CAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 618 ~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
.+.+++ .|.|+|++||+++.+. .||+++++
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888764 4889999999999775 69999999
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.1e-34 Score=344.19 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..|+|+||+
T Consensus 320 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-----~~i~~v~q~ 393 (552)
T TIGR03719 320 DKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-----VKLAYVDQS 393 (552)
T ss_pred CeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-----eEEEEEeCC
Confidence 35799999999995 467999999999999999999999999999999999999999999998541 269999999
Q ss_pred CC-CC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY-TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~-l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+. ++ ..|+.||+.++....... ..+.+..++++.+++.+ ..++.| .+||||||||++|||||+.+|+
T Consensus 394 ~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 394 RDALDPNKTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKV--------GQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred ccccCCCCcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhhCCC
Confidence 73 44 469999998764321111 12334567899999964 456655 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
++||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||+|++|+++|.
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~ 518 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSH 518 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCe
Confidence 99999999999999999999999987669999999999876 6999999987543
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=341.53 Aligned_cols=189 Identities=24% Similarity=0.257 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
..++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.++|+||++
T Consensus 318 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~~~q~~ 391 (530)
T PRK15064 318 NALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----ANIGYYAQDH 391 (530)
T ss_pred ceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEcccc
Confidence 4799999999995 467999999999999999999999999999999999999999999999883 5799999997
Q ss_pred C--CC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 523 Y--TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 523 ~--l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
. ++ ..|+.+|+.+... ....++++.++++.+++. +..++.+ .+||||||||++|||||+.+|+
T Consensus 392 ~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQDDIKKSV--------KVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccCCCCCcHHHHHHHhcc-----CCccHHHHHHHHHHcCCChhHhcCcc--------cccCHHHHHHHHHHHHHhcCCC
Confidence 4 33 3699999864211 112356788899999994 6667766 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999888789999999999876 69999999864
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.3e-34 Score=344.57 Aligned_cols=203 Identities=22% Similarity=0.333 Sum_probs=158.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
.+++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..|+||||+|
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 77 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEP 77 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccC
Confidence 3689999999996456899999999999999999999999999999999999999999999976 24799999999
Q ss_pred CCCc-ccHHHHhcCCCCCC--------------CcCCCC------CHHHHHHHHHhcCChhH-------HhcCCCCcccC
Q 001511 523 YTAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEYL-------LDRYPPEKEIN 574 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~--------------~~~~~~------~~~~i~~~l~~~~L~~~-------~~~~p~~~~~~ 574 (1064)
.++. .|+.||+.++.... ...... ..+++.+.++.+++.+. ++....+....
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 8764 69999998753210 000000 01233344444443211 11110000011
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 23589999999999999999999999999999999999999999999887789999999999886 58999999864
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-34 Score=312.69 Aligned_cols=178 Identities=18% Similarity=0.256 Sum_probs=148.8
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~-~~Ti~eni~~~ 536 (1064)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+++++|++.++ ..|+.+|+.++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g-------~~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------EVSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-------EEeEEecccCCCCCCcHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999998 367888888665 46999999764
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
............+.+.++++.+++.+..++.+ .+|||||+||++||||++.+|++|||||||++||+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPV--------KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence 22111111112234556788888888777655 4899999999999999999999999999999999999998
Q ss_pred HHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+.+ .|.|+|++||++..+. .+|+|++|+++
T Consensus 182 l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 8887654 4899999999999875 69999999865
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-33 Score=343.31 Aligned_cols=197 Identities=21% Similarity=0.263 Sum_probs=165.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..|||+||+
T Consensus 322 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~v~q~ 395 (556)
T PRK11819 322 DKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----VKLAYVDQS 395 (556)
T ss_pred CeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEeCc
Confidence 35799999999995 467999999999999999999999999999999999999999999998542 269999999
Q ss_pred C-CCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 P-YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p-~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+ .++ ..|+.||+.++....... ..+.+..++++.+++.+ ..++.| .+||||||||++||||++.+|+
T Consensus 396 ~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 396 RDALDPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKV--------GVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred hhhcCCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 7 444 469999998764221111 12334567899999963 456666 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
++||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||+|++++++|...
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999887569999999999875 699999998755444
No 329
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.7e-34 Score=374.38 Aligned_cols=200 Identities=20% Similarity=0.232 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEcC-CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEE
Q 001511 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~-~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~ 516 (1064)
..|+++||++.|+ +++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ .+.|+.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4699999999996 35789999999999999999999999999999999999999999999999965 23567899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++. .|++||+.++....+......++++.++++.+|+++..++.+. +||||||||++|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~--------~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ--------DLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 9999998775 6999999875432221111234568889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.+. .+|+|++|+++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~G 1136 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988865 3899999999999886 69999999875
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=329.52 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=159.7
Q ss_pred CCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEe
Q 001511 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~ 519 (1064)
..+++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~-------~~i~ 91 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-------ALIA 91 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe-------eeEE
Confidence 3479999999998764 469999999999999999999999999999999999999999999999853 1233
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+.+.+ ...|++||+.+.............+++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 92 ~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~--------~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 92 ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV--------KTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc--------ccCCHHHHHHHHHHHHHHhCCC
Confidence 34433 34699999976432111111112345667899999998888766 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~G 219 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYG 219 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 4899999999999875 69999999864
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.8e-33 Score=280.70 Aligned_cols=142 Identities=25% Similarity=0.443 Sum_probs=132.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l 524 (1064)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~~---- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----VKIGYFEQ---- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----EEEEEEcc----
Confidence 468999999854 57999999999999999999999999999999999999999999999983 47999988
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
||+||+||++|||||+.+|+++||||
T Consensus 71 ------------------------------------------------------lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||+.+...+.+.+++.+.|+|++||+++.+. .+|++++|+++
T Consensus 97 P~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 97 PTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999888899999999999885 58999999864
No 332
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.6e-34 Score=339.86 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=161.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++||++ ++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ..+++++
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 4689999984 37999999999999999999999999999999999999999999999854 1235679
Q ss_pred EEEecCCC---C-CcccHHHHhcCCCCCC--C----cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---T-AVGTLRDQLIYPLTSD--Q----EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l-~~~Ti~eni~~~~~~~--~----~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+||||+|. + +..|+.||+.++.... . ......++++.++++.+++. +..++.+ .+||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGek 401 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI--------GLLSGGNQ 401 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch--------hhCCHHHH
Confidence 99999972 3 4569999998753110 0 00111235678899999994 5666665 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|++|||++.+. .||++++|+++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999998887764 4889999999999875 69999999864
No 333
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-33 Score=370.10 Aligned_cols=201 Identities=20% Similarity=0.245 Sum_probs=172.2
Q ss_pred CCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccE
Q 001511 442 ANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEI 515 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i 515 (1064)
...|+++||++.|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+ .+.+++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 457999999999965 3689999999999999999999999999999999999999999999999964 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
||+||++.++. .|++||+.+.....+...+..++.+.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~--------~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG--------TYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh--------hCCHHHHHHHHHHHHHh
Confidence 99999987764 6999999864322221111223456788999999988888773 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.++ .||+|++|+++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999886 69999999864
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=321.19 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=170.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++.|| +..+++||||+|++||+.||+|+||+|||||+++|.|+|+|++|+|.++|+. +..+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4689999999998 7889999999999999999999999999999999999999999999999964 3467889
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
|||+|++.+++ .|+.|||..+...... ......+++.++.++.|++=-.+++. .+||-||||||.|-+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--------~dLsVG~qQRVEIlK 153 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--------ADLSVGEQQRVEILK 153 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--------ecCCcchhHHHHHHH
Confidence 99999998865 6999999988754211 11234566777888877763333322 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
||+++|++||||||||-|.|...+++++.++ +.|+|||+|||++..+. .||++-||..+.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 9999999999999999999999998877665 46999999999999876 699999998763
No 335
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=339.45 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=161.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++ ..+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.+
T Consensus 256 ~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 256 VRLRLDGLKG-----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred cEEEEecccc-----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 3689999984 248999999999999999999999999999999999999999999999853 1234689
Q ss_pred EEEecCC----CCCcccHHHHhcCCCCCCC---c---CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRP----YTAVGTLRDQLIYPLTSDQ---E---VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p----~l~~~Ti~eni~~~~~~~~---~---~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+|+||++ ..+..|+.||+.++..... . .....++++.++++.+++. +..++.| .+||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~ 402 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI--------MNLSGGNQ 402 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc--------ccCCHHHH
Confidence 9999997 3445799999987532110 0 0111234677899999994 5666666 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.++ +.|.|+|+||||++.+. .||++++++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988764 45899999999999874 79999999865
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-33 Score=336.65 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=162.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCc-------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGS-------DLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~-------~lr~ 513 (1064)
.+.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+. ..++
T Consensus 258 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 258 EPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred CceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 35799999999995 45799999999999999999999999999999999999876 799999998531 2356
Q ss_pred cEEEEecCCCCC---cccHHHHhcCCCCC----CCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHH
Q 001511 514 EIFYVPQRPYTA---VGTLRDQLIYPLTS----DQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 514 ~i~~v~Q~p~l~---~~Ti~eni~~~~~~----~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++|++|++.++ ..++.+++.++... ........++++.++++.+++.+ ..++.| .+|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF--------HSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch--------hhCCHHHHH
Confidence 899999998643 24677776543211 00001112356788999999986 777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHH--hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVA--FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1064)
|++|||||+.+|++|||||||++||+.+.+.+.+.+++ .+ .|+|+||||++.+. .+|++++|+++
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 99999999999999999999999999999999887765 34 57999999999885 48999999864
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-32 Score=338.43 Aligned_cols=300 Identities=30% Similarity=0.486 Sum_probs=277.6
Q ss_pred CCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHh
Q 001511 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIA 815 (1064)
Q Consensus 736 ~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n 815 (1064)
..+..+...+.+...|.+.+++.+.++...++++++|++++.++.++|.++.+++++|.+.|.+.+..|++++++++++|
T Consensus 73 ~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~ 152 (659)
T TIGR00954 73 GVFLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFIN 152 (659)
T ss_pred HHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHH
Q 001511 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWR 895 (1064)
Q Consensus 816 ~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~ 895 (1064)
+.++|+++++...||+++++|++++|+++..||++++.|++..|+|||||+||++||+.++++++++++|++|++.++..
T Consensus 153 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 153 SAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHH
Q 001511 896 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 975 (1064)
Q Consensus 896 l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~ 975 (1064)
|....++..++++++++.+++.+.+.++|+++++..++++.||+||..|++.++|+|||++|+|++.|+..+++.++++.
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcC-CccccchhHHHHHHHhHH
Q 001511 976 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG-DRALVSTQGEIRMIMNLI 1035 (1064)
Q Consensus 976 ~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1035 (1064)
++..+..+.+.+++.+++++.+|.+.+++|.++..|++..+| ....++.++-.+.+....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~ 373 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNG 373 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888886554 223455555444444433
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-33 Score=308.47 Aligned_cols=189 Identities=23% Similarity=0.293 Sum_probs=155.0
Q ss_pred EeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-----------eCCCC-c----cc
Q 001511 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----DL 511 (1064)
Q Consensus 448 ~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~l 511 (1064)
.||+++|++++.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3678888655579999994 999999999999999999999999999999999996 66754 1 11
Q ss_pred c---ccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 512 N---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 512 r---~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+ ..+++++|++..+..++.+++.+.... ...++++.++++.+|+.+..++.+ .+||||||||++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~ 149 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-----KDERGKLDELVDQLELRHVLDRNI--------DQLSGGELQRVA 149 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhch-----hHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHH
Confidence 1 247899998776555666665543211 123456788999999988777665 389999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+. .||+|++|+++
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 99999999999999999999999999988877654 4899999999999887 69999999864
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-33 Score=343.24 Aligned_cols=206 Identities=21% Similarity=0.241 Sum_probs=163.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++|++|++.
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~ 74 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETP 74 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCC
Confidence 378999999994 568999999999999999999999999999999999999999999999884 25899999764
Q ss_pred CCcccHHHHhcCCCC---------------C--------C----CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCC
Q 001511 524 TAVGTLRDQLIYPLT---------------S--------D----QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~---------------~--------~----~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~ 575 (1064)
.+..|+.+.+..... . . .......+.++.++++.+|+. +..++.+
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~------- 147 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV------- 147 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-------
Confidence 443454443321000 0 0 000012345678889999996 4555544
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||+..+. .||+|++|+++ ...
T Consensus 148 -~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G-~i~ 225 (638)
T PRK10636 148 -SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ-SLF 225 (638)
T ss_pred -hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC-EEE
Confidence 489999999999999999999999999999999999999999999988889999999999875 69999999864 333
Q ss_pred EeecCCCccc
Q 001511 655 VHDKRDGSSV 664 (1064)
Q Consensus 655 ~~~~~~~~~~ 664 (1064)
...+++..+.
T Consensus 226 ~~~g~~~~~~ 235 (638)
T PRK10636 226 EYTGNYSSFE 235 (638)
T ss_pred EecCCHHHHH
Confidence 3444554443
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.1e-33 Score=339.82 Aligned_cols=206 Identities=23% Similarity=0.268 Sum_probs=170.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|+++||++.|+ ++++++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.+ -.|+|++|+
T Consensus 317 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----~~i~y~~q~ 390 (635)
T PRK11147 317 KIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----LEVAYFDQH 390 (635)
T ss_pred CceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----cEEEEEeCc
Confidence 34799999999995 467999999999999999999999999999999999999999999998 421 269999998
Q ss_pred CC-C-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY-T-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~-l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+. + +..|+.||+.++..... ......++.++++.+++. +..++.+ .+||||||||++|||||+.+|+
T Consensus 391 ~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQEVM--VNGRPRHVLGYLQDFLFHPKRAMTPV--------KALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred ccccCCCCCHHHHHHhhccccc--ccchHHHHHHHHHhcCCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 63 4 34699999987532110 011245677889999985 4556655 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSS 663 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~ 663 (1064)
+|||||||++||+.+...+.+.+++.+.|+|+||||...+. .||+|++++++|.....+++++.+
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999988779999999999875 699999998666565555555433
No 341
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.8e-33 Score=345.38 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=159.3
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC--ccEEEeCCCC--ccccccEEEEecCCCC
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--SGHIAKPGVG--SDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--~G~I~i~g~~--~~lr~~i~~v~Q~p~l 524 (1064)
|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+||.+ .+.+++++||+|++.+
T Consensus 73 ~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l 151 (659)
T PLN03211 73 DETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDIL 151 (659)
T ss_pred cccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccccc
Confidence 3333442 467999999999999999999999999999999999999885 9999999975 3445679999999988
Q ss_pred Cc-ccHHHHhcCCCCCC---CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 525 AV-GTLRDQLIYPLTSD---QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 525 ~~-~Ti~eni~~~~~~~---~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+. .|++||+.+..... ....++..+++.++++.+|+.+..+....+ ....+||||||||++|||+|+++|+++
T Consensus 152 ~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN---SFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCC---CCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 75 69999998753211 001111234577899999998765443211 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~ 650 (1064)
||||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.+|+|++|+++
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G 283 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCC
Confidence 99999999999999999888764 58999999999973 4679999999864
No 342
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-33 Score=297.02 Aligned_cols=174 Identities=26% Similarity=0.369 Sum_probs=154.1
Q ss_pred eceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C--c-----cccccEEEEecCCCCCc-ccHHH
Q 001511 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G--S-----DLNKEIFYVPQRPYTAV-GTLRD 531 (1064)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~--~-----~lr~~i~~v~Q~p~l~~-~Ti~e 531 (1064)
++||+.+..-++||-|+||||||||+|+|+|+..|++|.|.+||. | + --+++|||||||.-+|. .||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688888887899999999999999999999999999999999995 2 1 12678999999998875 69999
Q ss_pred HhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001511 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1064)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~ 611 (1064)
|+.|+... ...++..++.+.+|++++++++|. .|||||||||||+|||+..|++|++|||.|+||.
T Consensus 96 NL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~--------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPG--------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhcc------cchHhHHHHHHHhCcHHHHhhCCC--------ccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999754 245677888999999999999995 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 612 DMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 612 ~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
..+.+++-.++ +.+.-|+.|||.+.++ +.||++++|+++
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCC
Confidence 99988776554 3589999999999876 569999999986
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-34 Score=287.70 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.| +++.+++|+|++|++|.+++|+||||+|||||+.++++|.++++|+|.++|.+ +++.+++++
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 47899999998 46789999999999999999999999999999999999999999999999975 457788999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCC--CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+-|+..+- ..||+|-+.||.-.. +....++...+.++++-++|.++.+++-. +||||||||.-||..++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd--------~LSGGQrQRAfIAMVla 151 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD--------ELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH--------hcccchhhhhhhheeee
Confidence 99988754 569999999886432 22233556678899999999999999863 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+.+.++||||.++||.....++++.++ +.|+|+++|-||.+.+. ++|+|+-|.++
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G 212 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNG 212 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCC
Confidence 9999999999999999988888777665 46999999999999986 68999999875
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=330.59 Aligned_cols=255 Identities=23% Similarity=0.294 Sum_probs=200.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++|+++.| +++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|..++. -+++|++|++.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----LRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----ceEEEeCCCCC
Confidence 68999999999 6789999999999999999999999999999999999999999999998762 36999999998
Q ss_pred CCc-ccHHHHhcCCCCCCCcC------------------------------CCCCHHHHHHHHHhcCChhHHhcCCCCcc
Q 001511 524 TAV-GTLRDQLIYPLTSDQEV------------------------------EPLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1064)
Q Consensus 524 l~~-~Ti~eni~~~~~~~~~~------------------------------~~~~~~~i~~~l~~~~L~~~~~~~p~~~~ 572 (1064)
... .|+.+.+..+....... ....+.++..++..+|+.+. ++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~------ 149 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR------ 149 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC------
Confidence 875 49999887653210000 00112344445555555443 22
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
...+||||||.|++|||||+.+||+|+|||||++||.++..++.+.|++...|+|+||||..++. .|++|+.++.+
T Consensus 150 --~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g- 226 (530)
T COG0488 150 --PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG- 226 (530)
T ss_pred --chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC-
Confidence 12589999999999999999999999999999999999999999999876339999999999886 69999999976
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
....+.++++.+...+....+....+..++...+...+.|..+....+.+..++.+..+++.+
T Consensus 227 ~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k 289 (530)
T COG0488 227 KLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEK 289 (530)
T ss_pred ceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456677888888887766665555555555556777777777766666554456777666665
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-32 Score=332.31 Aligned_cols=187 Identities=23% Similarity=0.319 Sum_probs=162.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++|+++.|.+ ..|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++ ..++|+||+
T Consensus 338 ~~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------~~i~y~~Q~ 408 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------LKISYKPQY 408 (590)
T ss_pred ceEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------eeEEEeccc
Confidence 347999999999853 35999999999999999999999999999999999999999999885 269999999
Q ss_pred CCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+.+ +..|++||+.++.... .....+.++++.+++.+..++.|. +|||||||||+|||||+.+|+++
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~--------~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDL-----GSSYYKSEIIKPLQLERLLDKNVK--------DLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhc-----ChHHHHHHHHHHCCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCEE
Confidence 864 4579999998752211 123356789999999988888774 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||++||+.++..+.+.+++ .|.|+|+||||+..+. .||++++++++
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~ 530 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGE 530 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999888764 3899999999999875 69999999863
No 346
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=331.13 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=158.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
..|+++|+++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.+
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 479999999863 469999999999999999999999999999999999999999999999854 1 124569
Q ss_pred EEEecCCC---CC-cccHHHHhcCC-----CCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---TA-VGTLRDQLIYP-----LTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~-----~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+|+||++. ++ ..|+.+|+.+. ...... .....++++.++++.+++. +..++.| .+||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~ 397 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--------GSLSGGNQ 397 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc--------ccCCcHHH
Confidence 99999963 33 35777664321 110010 0111234567788888885 4455555 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||||++.+|++|||||||++||+.+.+.+++.++ +.|.|+|++|||++.+. .||++++|+++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988774 45999999999999875 79999999864
No 347
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.6e-33 Score=332.24 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=159.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
..++++|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.|
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4799999983 26999999999999999999999999999999999999999999999853 1 124579
Q ss_pred EEEecCCC---CC-cccHHHHhcCCCC---CCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 516 FYVPQRPY---TA-VGTLRDQLIYPLT---SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~~~---~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+|+||++. ++ ..|+.+|+..... .........++++.++++.+++. +..++.+ .+||||||||+
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~kqrl 412 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA--------RTLSGGNQQKV 412 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc--------ccCCcHHHHHH
Confidence 99999862 44 4599999853210 00000111234577889999996 5666665 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G 479 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999885 69999999864
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.9e-32 Score=355.06 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcC---CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC--ccccccE
Q 001511 444 YIEFSGVKVVTP---TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG--SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~---~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~--~~lr~~i 515 (1064)
.++++||++.|+ +++++|+|||+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||.+ .++|+.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 589999999885 24679999999999999999999999999999999999998 789999999975 3567889
Q ss_pred EEEecCCC-CCcccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPY-TAVGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~-l~~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+||+|++. ++..|++||+.+....+. ..+.+.++++.++++.+++.+..++.+. +.+.+||||||||++|||
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~----~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG----VPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC----CCCCCCCHHHhhHHHHHH
Confidence 99999875 556799999997532211 1111223567889999999887666542 123479999999999999
Q ss_pred HHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH--HhcCEEEEEeCCCceE
Q 001511 592 LFYHKPK-FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV--AFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 592 AL~~~P~-iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i--~~~D~Il~l~~~g~~~ 654 (1064)
||+.+|+ +|+|||||||||+.+...+.+.+++ .|+|+|+++|+++.. ..+|++++|+++|...
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 9999997 9999999999999999999888765 489999999999863 6799999999765433
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-32 Score=333.87 Aligned_cols=189 Identities=21% Similarity=0.318 Sum_probs=161.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++||++|+
T Consensus 310 ~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~igy~~Q~ 383 (638)
T PRK10636 310 NPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----IKLGYFAQH 383 (638)
T ss_pred CceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----EEEEEecCc
Confidence 34799999999995 467999999999999999999999999999999999999999999998641 369999998
Q ss_pred C--CCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 522 P--YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 522 p--~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+ .+. ..|+.+++.... .....+++.++++.+++. +..++.+ .+|||||||||+|||+|+.+|
T Consensus 384 ~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~l~~~~~~~~~--------~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 384 QLEFLRADESPLQHLARLA------PQELEQKLRDYLGGFGFQGDKVTEET--------RRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred chhhCCccchHHHHHHHhC------chhhHHHHHHHHHHcCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 5 232 347888764211 112356788899999996 4566655 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||||++||+.+...+.+.+++.+.|+|+||||+..+. .||+|++|+++
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDG 503 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887779999999999885 69999999864
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.3e-32 Score=336.14 Aligned_cols=192 Identities=20% Similarity=0.297 Sum_probs=159.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
+.++++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++ +.+|+|++|++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----~~~igyv~Q~~ 581 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----KVRMAVFSQHH 581 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----ceeEEEEeccc
Confidence 5799999999996556799999999999999999999999999999999999999999999876 34799999987
Q ss_pred CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
. ...++.+|........ .....++++.++++.+++.+ ..++.| .+||||||||++|||||+.+|++||
T Consensus 582 ~-~~l~~~~~~~~~~~~~--~~~~~~~~i~~~L~~~gl~~~~~~~~~--------~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 582 V-DGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred c-ccCCcchhHHHHHHHh--cCCCCHHHHHHHHHHCCCChHHhcCCc--------cccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3 2224444432110000 00124567889999999974 556655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++||+.+...+.+.+.+.+.|+|+||||+..+. .||++++|+++
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G 700 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEG 700 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999988875569999999999886 69999999864
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=268.32 Aligned_cols=195 Identities=21% Similarity=0.328 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC----ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG----SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~----~~lr~~i~ 516 (1064)
++.++||+..-+ +...|-|+||+|.+||++.|+||||||||||+..+.|.+.++ +|++.+++++ ..-++++|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578899998764 567999999999999999999999999999999999999874 8999999975 23468999
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
++|||+++|. .+|.+|+.|..+..-.. ......+..+|++.|+..+.++.|. +||||||-||++-|+|+.
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG-~aRr~~a~aAL~~~gL~g~f~~dP~--------tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKG-NARRNAANAALERSGLDGAFHQDPA--------TLSGGQRARVALLRALLA 151 (213)
T ss_pred eeecccccccccccccceEEecCccccc-HHHHhhHHHHHHHhccchhhhcChh--------hcCcchHHHHHHHHHHHh
Confidence 9999999986 59999999976643211 1344557789999999999999884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 596 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
.|+.++||||+|.||...+.+.. ..+++.|.-+|+||||...+..-.+++.+.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 99999999999999987766644 455677999999999999888777777664
No 352
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8e-33 Score=314.16 Aligned_cols=167 Identities=27% Similarity=0.386 Sum_probs=141.7
Q ss_pred EEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++++|+||++.++. .|++||+.++............++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999964 123568999999998775 599999998743221111122456
Q ss_pred HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCc
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGT 626 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~ 626 (1064)
+.++++.+++.++.++.|. +||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~--------~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPH--------QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHcCCcchhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 7889999999998888874 8999999999999999999999999999999999999998887654 389
Q ss_pred EEEEEccChhHHH-hcCEEEEEeCC
Q 001511 627 SCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+|+|||+++.+. .||+|++|+++
T Consensus 153 tiiivTHd~~e~~~~~d~i~vl~~G 177 (325)
T TIGR01187 153 TFVFVTHDQEEAMTMSDRIAIMRKG 177 (325)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999865 69999999864
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=289.82 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=167.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cccccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
...|+++||++.| +++++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|.. .++|++
T Consensus 29 ~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 29 EPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4579999999998 57899999999999999999999999999999999999999999999988853 468999
Q ss_pred EEEEecC---CCCCcccHHHHhcCCCCCC-C----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 515 IFYVPQR---PYTAVGTLRDQLIYPLTSD-Q----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 515 i~~v~Q~---p~l~~~Ti~eni~~~~~~~-~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
||+|.-. -+....+++|-+.-+.... + ...+...+++..+++.+|+.+..++.- .+||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~--------~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF--------GSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch--------hhcCHhHHHH
Confidence 9999743 2344568888776432211 1 112234456778999999999887743 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-----GTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~-----g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+-|||||+++|++|||||||+|||...++.+.+.+.+. +.++|+|||..+.+. +.++++.++++.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 99999999999999999999999999999988877652 678999999999875 679999998653
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=7.4e-32 Score=280.03 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=127.1
Q ss_pred EeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcc
Q 001511 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVG 527 (1064)
Q Consensus 448 ~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~ 527 (1064)
.||++.|. ++++++|+ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|++.
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------~i~~~~q~~~---- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------TPVYKPQYID---- 71 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------EEEEEcccCC----
Confidence 57888884 46788884 999999999999999999999999999999999999999984 4889888642
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
||||||||++||||++.+|+++||||||+
T Consensus 72 ---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 72 ---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 608 AVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 608 aLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
+||+.+++.+.+.+++ . +.|+|++||+++.+. .+|++++++++.+
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 9999999998887754 3 489999999999887 6999999987643
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.98 E-value=1.2e-31 Score=329.80 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=159.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++||++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. ..+++++|++.
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----LIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----CEEEEeccCCC
Confidence 589999999995 468999999999999999999999999999999999999999999999873 24788998764
Q ss_pred C-CcccHHHHhcCCCC-------------------C-C--------------CcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 524 T-AVGTLRDQLIYPLT-------------------S-D--------------QEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 524 l-~~~Ti~eni~~~~~-------------------~-~--------------~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
. ..+++.+++..+.. . . .......+.++.++++.+|+.. ++.+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~ 154 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL 154 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch
Confidence 3 23455554321100 0 0 0000112456777888888752 3333
Q ss_pred CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEE
Q 001511 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 569 ~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||...+. .||+|++|
T Consensus 155 --------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 155 --------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred --------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 489999999999999999999999999999999999999999999988789999999999875 69999999
Q ss_pred eCCCceEEeecCCCcc
Q 001511 648 DGEGEWRVHDKRDGSS 663 (1064)
Q Consensus 648 ~~~g~~~~~~~~~~~~ 663 (1064)
+++ ......+++..+
T Consensus 227 ~~G-~i~~~~g~~~~~ 241 (635)
T PRK11147 227 DRG-KLVSYPGNYDQY 241 (635)
T ss_pred ECC-EEEEecCCHHHH
Confidence 864 333334444433
No 356
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.97 E-value=1.3e-29 Score=282.24 Aligned_cols=275 Identities=28% Similarity=0.484 Sum_probs=248.7
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
++.+++|++.+.|..+...++.+++++++.++++.++++++.+.+.++++++.++.+.|++.++.+++++++.++++...
T Consensus 7 lr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~ 86 (281)
T PF06472_consen 7 LRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSIL 86 (281)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777788788888899999999999999999999999999999999999888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
+|+...+..+||+|+|++++++|+++..+|.+...+++++||||||++||+.+++...+++.+++.++++.+.|+++++.
T Consensus 87 ~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~ 166 (281)
T PF06472_consen 87 KYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWS 166 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999888877
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
...+...+++++++++..+++++++|++.+++.++|+.||++|..+.++++|+|+|++|+||+.|..+++++|+++.++.
T Consensus 167 ~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~ 246 (281)
T PF06472_consen 167 ISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNW 246 (281)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 65555556778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 359 (1064)
++.++.....++++.++..+++..++.+++.+|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 247 RRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99888888899988887567777777777766653
No 357
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=9.2e-32 Score=287.96 Aligned_cols=172 Identities=17% Similarity=0.119 Sum_probs=138.7
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-eCCCCccccccEEEEecCCCCCc-ccHHHHhcCCC
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-KPGVGSDLNKEIFYVPQRPYTAV-GTLRDQLIYPL 537 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-i~g~~~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~ 537 (1064)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|.. + .+.|++.++. .|++||+.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~------~-~~~~~~~l~~~ltv~enl~~~~ 74 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA------L-PLGANSFILPGLTGEENARMMA 74 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce------e-ccccccccCCcCcHHHHHHHHH
Confidence 79999999999999999999999999999999999999999997 77632 1 2345666665 59999998753
Q ss_pred CCCCcCCCCCHHHHH-HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 538 TSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 538 ~~~~~~~~~~~~~i~-~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
.... ...++.. .+.+..++.+..++.+ .+||||||||++||||++.+|+++||||||+++|+.++..
T Consensus 75 ~~~~----~~~~~~~~~~~~~~~l~~~~~~~~--------~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 75 SLYG----LDGDEFSHFCYQLTQLEQCYTDRV--------SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHcC----CCHHHHHHHHHHHhChhHHhhchH--------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 3211 1122222 3345567766666554 3799999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+.+ .+.|+|++||+++.+. .||++++|+++
T Consensus 143 ~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G 179 (213)
T PRK15177 143 MQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHG 179 (213)
T ss_pred HHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECC
Confidence 8886643 3678999999999885 79999999864
No 358
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=8.6e-32 Score=330.01 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=159.0
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC---ccccccEEEEecCCCCC-cccH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTA-VGTL 529 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~lr~~i~~v~Q~p~l~-~~Ti 529 (1064)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.+ ..+++.++||+|++.++ ..||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 8999999975 34678899999999877 4699
Q ss_pred HHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 530 RDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 530 ~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
+|||.++...+.. .....++++.++++.+|+.+..+....+. ..+..||||||||++|||+|+.+|++++|||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP--GRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCC--CCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999886432211 11123456888999999987655543210 013579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChh--HHHhcCEEEEEeCC
Q 001511 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPA--LVAFHDVVLSLDGE 650 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1064)
||||+.+...+.+.+++ .|+|+|+++|+++ ....+|++++|+++
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 99999999999887765 4899999999986 35789999999854
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.5e-31 Score=274.75 Aligned_cols=150 Identities=23% Similarity=0.350 Sum_probs=127.7
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCcc-ccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-LNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~-lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+++|+|+||++++|++++|+||||||||||+|+++ +++|++.++|.... .+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999985 37899999875322 2335777776
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDM 613 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~--P~iliLDEPTSaLD~~~ 613 (1064)
.++++.+++.+. .++.+ .+||||||||++||||++.+ |+++||||||++||+.+
T Consensus 68 ---------------~~~l~~~~L~~~~~~~~~--------~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 ---------------LQFLIDVGLGYLTLGQKL--------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred ---------------HHHHHHcCCCccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 246777787643 44433 48999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 614 EERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 614 ~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+.+.+.+++ .|+|+|+|||+++.+..+|++++|+++
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g 164 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG 164 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCC
Confidence 9998887765 589999999999999899999999764
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=3.6e-31 Score=321.45 Aligned_cols=184 Identities=25% Similarity=0.292 Sum_probs=154.3
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-----------eCCCC-c----c--
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----D-- 510 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~-- 510 (1064)
+++++|..+..+|++++ ++++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . .
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 37778864457999999 9999999999999999999999999999999999997 78864 1 1
Q ss_pred -ccccEEEEe----cCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 -LNKEIFYVP----QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 -lr~~i~~v~----Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.+.++++.+ |.|.++.+|++|++... ...+++.++++.+++.+..++.+ .+|||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~q 219 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQ 219 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHH
Confidence 122345444 45556677999998642 13457888999999988777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.....+.+.+++. |.|+|+||||++.+. .+|++++++++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999988877654 999999999999875 58999999864
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=9.1e-31 Score=342.91 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=167.8
Q ss_pred cEEEEeeEEEcC------------CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCC-
Q 001511 444 YIEFSGVKVVTP------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG- 508 (1064)
Q Consensus 444 ~i~~~nvs~~y~------------~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~- 508 (1064)
.+.++||++..+ +++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998753 124799999999999999999999999999999999999874 78999999965
Q ss_pred --ccccccEEEEecCCCCC-cccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 509 --SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
...++.+|||+|++.++ ..|++||+.++...+. .......+.+.++++.++|.+..++.+.+. ....||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~---~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP---GVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCC---CCCCcCHH
Confidence 23567899999998654 5699999987532110 011112345788999999988776654211 12479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCce
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~ 653 (1064)
||||++|||+|+.+|++|+|||||||||+.+...+++.+++ .|+|+|+++|+++. ...+|++++|+++|..
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999888765 48999999999984 4679999999875543
No 362
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.8e-31 Score=270.96 Aligned_cols=275 Identities=19% Similarity=0.286 Sum_probs=207.4
Q ss_pred cEEEEeeEEEcC--CC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTP--TG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~--~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.+.++|++..+. .+ ..+++++|+++.+||+-|+||+||||||-+.|+|+|..+ .+.-+..+++.+ .+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 355667776543 23 479999999999999999999999999999999999854 345556666654 11
Q ss_pred ----ccccEEEEecCCCC---CcccHHHHhcCCCCCCC----cCC--CCCHHHHHHHHHhcCCh---hHHhcCCCCcccC
Q 001511 511 ----LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ----EVE--PLTHGGMVELLKNVDLE---YLLDRYPPEKEIN 574 (1064)
Q Consensus 511 ----lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~----~~~--~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~ 574 (1064)
+.+.|+++||+|.. ++.+|..++.-..+... ... .....++.++|.++|+. |....||.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~----- 157 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY----- 157 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc-----
Confidence 23679999999974 34577776654322110 001 13567889999999996 45677885
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|--||-|+|.||.|++.+|++||.||||+++|+.++.++++++.+ .|.|+++++||+..+. -||+
T Consensus 158 ---ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~------ 228 (330)
T COG4170 158 ---ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK------ 228 (330)
T ss_pred ---hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh------
Confidence 8999999999999999999999999999999999999999998864 3899999999999885 3544
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC----CCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~ 725 (1064)
+. |||.|+-+|++++++.... |.||||++|+.++|+.... .++
T Consensus 229 -------------------------------i~-VlYCGQ~~ESa~~e~l~~~-PhHPYTqALi~a~PDF~~~lp~KsrL 275 (330)
T COG4170 229 -------------------------------IN-VLYCGQTVESAPSEELVTM-PHHPYTQALIRAIPDFGSALPHKSRL 275 (330)
T ss_pred -------------------------------eE-EEEecccccccchhHHhcC-CCCchHHHHHHhCccccccCcchhhh
Confidence 33 7778888888988888875 8999999999999985432 456
Q ss_pred CCCCCCCCCCCCchh---------hhhccccccCCceeecCCCeeehhHHH
Q 001511 726 PVFPQLKSAPRILPL---------RVADMFKVLVPTVFDKQGAQLLAVAFL 767 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~~~ 767 (1064)
..+||..|.....|. .+.+.| ++.|... .-..|...|-+=
T Consensus 276 ~tL~G~iP~Le~lPiGCRLGPRCP~AQk~C-ie~P~~~-~~K~H~FsCH~P 324 (330)
T COG4170 276 NTLPGAIPLLEQLPIGCRLGPRCPYAQREC-IETPRLT-GAKNHLFACHFP 324 (330)
T ss_pred ccCCCcCchhhhCCcccccCCCCchhhhhh-hcchhhh-hhhcceeeeccc
Confidence 678998887777662 466666 3345542 223455666443
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.7e-30 Score=263.19 Aligned_cols=144 Identities=34% Similarity=0.567 Sum_probs=128.9
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEec
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQ 520 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q 520 (1064)
++|+++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.++|+||
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 6789998864 479999999999999999999999999999999999999999999999853 123456777777
Q ss_pred CCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
|||||+||++||||++.+|+++
T Consensus 81 ----------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 81 ----------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 649 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~ 649 (1064)
+|||||++||..++..+.+.+++ .++|+|++||+++.+.. +|+++++++
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKD 155 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999998887764 36899999999999876 699999976
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-30 Score=266.01 Aligned_cols=200 Identities=28% Similarity=0.371 Sum_probs=166.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
.++++||++.-.+.+.+|++|||+|++||+.+|+||||||||||.++|+|. |.+++|+|.++|.| +.-|..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 589999998764335899999999999999999999999999999999997 58899999999986 234678
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCCCCcC---CCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTSDQEV---EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~---~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|.+-+|.|.=+.| |+.+-+..+....... .....+++.+.++.+++++ +++|... ..+|||||+|..|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-------~GFSGGEkKR~Ei 155 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-------EGFSGGEKKRNEI 155 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-------CCcCcchHHHHHH
Confidence 9999999986655 8888776543221111 1133567888999999975 7777653 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChhHHHhc--CEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAFH--DVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~~i~~~--D~Il~l~~~ 650 (1064)
+.+++.+|++.|||||-||||.+.-+.+.+. +++.|.++++|||.-..+.+. |++.+|-++
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~G 221 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDG 221 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECC
Confidence 9999999999999999999999988877654 455699999999999998876 999999764
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.1e-30 Score=320.12 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=148.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC---CCCccEEEeCCCC-----c----
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW---PLVSGHIAKPGVG-----S---- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~---~p~~G~I~i~g~~-----~---- 509 (1064)
...|+++|+++.|+ ++++|+|+||+|++|+++|||||||||||||+|+|+|.. .|++|+|.+.++. .
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 34699999999995 567999999999999999999999999999999999964 4677887643221 0
Q ss_pred -----------cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-------------------CCCHHHHHHHHHhcC
Q 001511 510 -----------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-------------------PLTHGGMVELLKNVD 559 (1064)
Q Consensus 510 -----------~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-------------------~~~~~~i~~~l~~~~ 559 (1064)
.+++.+++++|+|.+...+..+|...+.. ..... ...++++.+++..+|
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 01233566666654322222222211100 00000 012345666777777
Q ss_pred Ch-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHH
Q 001511 560 LE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALV 638 (1064)
Q Consensus 560 L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i 638 (1064)
+. +..++.+ .+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||+..+
T Consensus 333 l~~~~~~~~~--------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l 404 (718)
T PLN03073 333 FTPEMQVKAT--------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFL 404 (718)
T ss_pred CChHHHhCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 75 3444444 48999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-hcCEEEEEeCC
Q 001511 639 A-FHDVVLSLDGE 650 (1064)
Q Consensus 639 ~-~~D~Il~l~~~ 650 (1064)
. .||+|++|+++
T Consensus 405 ~~~~d~i~~l~~g 417 (718)
T PLN03073 405 NTVVTDILHLHGQ 417 (718)
T ss_pred HHhCCEEEEEECC
Confidence 6 59999999964
No 366
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=259.10 Aligned_cols=197 Identities=22% Similarity=0.268 Sum_probs=150.7
Q ss_pred EEEeeEEEcC----CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 446 EFSGVKVVTP----TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~----~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
++.|..+.+. ..+++|+++|++|++|+++.|+|.||||||||+++|+|-.+|++|+|.+||.+ ......+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 3445555432 24689999999999999999999999999999999999999999999999976 1223468
Q ss_pred EEEecCCC---CCcccHHHHhcCCCCCC---CcCCC---CCHHHHHHHHHhcCC--hhHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---TAVGTLRDQLIYPLTSD---QEVEP---LTHGGMVELLKNVDL--EYLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l~~~Ti~eni~~~~~~~---~~~~~---~~~~~i~~~l~~~~L--~~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+-|||||. .+..||.||+....... +.... ...+...+-++.+++ +..++. +..-||||||
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~--------~iglLSGGQR 154 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD--------RIGLLSGGQR 154 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC--------hhhhccchHH
Confidence 88999996 35679999998753221 11110 111223344444443 222222 1236999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|-++++.|-++.|+||+|||-|+||||.+.+.+++. +.+.+.|.+||||.++.+ .+-+|.++|+++
T Consensus 155 QalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G 225 (263)
T COG1101 155 QALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG 225 (263)
T ss_pred HHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCC
Confidence 999999999999999999999999999999988865 455689999999999865 678999999875
No 367
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=254.39 Aligned_cols=199 Identities=26% Similarity=0.350 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCC-CC-c-----c-cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VG-S-----D-LNKE 514 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g-~~-~-----~-lr~~ 514 (1064)
..++++||+++| ++-.+|+|+||++.+||.-+|+||||+||||++.+|.|--+|++|++.++| .+ . . -|..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 468999999998 467899999999999999999999999999999999999999999999999 33 1 1 2567
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
||-=||.|..|. .||+||+......++. ...+..+++.++|...||.+..++.. ..||-||||
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A--------~~LSHGqKQ 154 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA--------ALLSHGQKQ 154 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh--------hhhccchhh
Confidence 888899999886 5999999875443221 11234458999999999998777654 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++.|++.++.+|++|+||||++|+..+..++.-++++. ...++++|.||+..++ .+|+|-||+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 99999999999999999999999977766666666665 3789999999999986 69999999865
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5e-28 Score=287.71 Aligned_cols=190 Identities=23% Similarity=0.322 Sum_probs=164.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++|+++.|++++++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.. .-++||.+|+
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----~v~igyf~Q~ 393 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----TVKIGYFDQH 393 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----ceEEEEEEeh
Confidence 45799999999997778999999999999999999999999999999999999999999998753 2369999998
Q ss_pred CC-C-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 522 PY-T-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 522 p~-l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
.. + ...|+.|++....+. ..+..+...|.++++..-....| ...||||||-|+.+|+.++.+|.+
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~------~~e~~~r~~L~~f~F~~~~~~~~-------v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPD------GDEQEVRAYLGRFGFTGEDQEKP-------VGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred hhhcCccCcHHHHHHhhCcc------ccHHHHHHHHHHcCCChHHHhCc-------hhhcCHhHHHHHHHHHHhccCCCE
Confidence 73 2 455899998754322 12677889999999964322223 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||||+.||.++.+.+.++|.+..-|+|+||||..++. .|++|+.+++
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9999999999999999999999999999999999999986 5899999987
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=250.79 Aligned_cols=199 Identities=26% Similarity=0.319 Sum_probs=160.3
Q ss_pred cEEEEeeEEEcC----CC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------
Q 001511 444 YIEFSGVKVVTP----TG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------- 508 (1064)
Q Consensus 444 ~i~~~nvs~~y~----~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------- 508 (1064)
.+.++||+++|. ++ -++++|+||+++.||++++-||||+|||||+|.|-+-|.|++|+|.+.-.+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 478888888763 23 379999999999999999999999999999999999999999999986432
Q ss_pred -c---c-ccccEEEEecCCC-CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 509 -S---D-LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 -~---~-lr~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
. + .|+.||||+|--- ++.-+-.|.+..|....+...+...+++.+++.++++.+.+=.++. .++|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP-------aTFSGG 156 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP-------ATFSGG 156 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC-------cccCCc
Confidence 0 1 2568999999642 3444445555555443333333455678889999999866555543 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||.|||.++.+-+||+|||||++||..+.+.+.+++.+ .|..+|=|=||.+.-+ .|||++.+..
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999998888764 5999999999998765 5899998864
No 370
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=287.77 Aligned_cols=268 Identities=18% Similarity=0.221 Sum_probs=231.0
Q ss_pred ccccCCceeecCCCeeehhHHHHHHh----hHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 001511 746 FKVLVPTVFDKQGAQLLAVAFLVVSR----TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHL 821 (1064)
Q Consensus 746 Cri~iP~l~s~e~g~lv~c~~~lv~R----t~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~ 821 (1064)
..+..|.+.++........+..+++= +...++++.=+|.+-.+|-++|...|...+..+..++.-.-.++..-.|+
T Consensus 30 w~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L 109 (604)
T COG4178 30 WMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWL 109 (604)
T ss_pred HHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544443344333333 44456677778889999999999999999999998888777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceEEeccC--CCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHh
Q 001511 822 TARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS--SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899 (1064)
Q Consensus 822 ~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~--~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~ 899 (1064)
+.++.++||.+||+|++++||+++.||++.+.+ +-++||||||++||..||++..+|.-+++++++.++-|+.-|+.+
T Consensus 110 ~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~l 189 (604)
T COG4178 110 NQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSL 189 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999997 778999999999999999999999999999999999999999987
Q ss_pred hCC----------chh----HHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHH
Q 001511 900 TGQ----------RGV----AILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 965 (1064)
Q Consensus 900 ~g~----------~g~----~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~ 965 (1064)
.|. ..| ..++.|.++++.+.-.+.||+.+|..+.+++||+|||.|.|+..|||+||||+|++.||.
T Consensus 190 sg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~ 269 (604)
T COG4178 190 SGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERR 269 (604)
T ss_pred cCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHH
Confidence 662 223 344567777777766999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhh
Q 001511 966 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014 (1064)
Q Consensus 966 ~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~ 1014 (1064)
.+++.|...++-.+++..+-..|..+.+-+ -++..++.+.++++.+|.
T Consensus 270 ~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy-~~~s~v~P~li~ap~~f~ 317 (604)
T COG4178 270 RLDDRFDAVLGNWRRLVRAQIRLTWFQLGY-GWLSVVLPILIAAPRYFS 317 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhh-hHHHHHHHHHhccHhhhc
Confidence 999999999999999999999999999866 566779999999999986
No 371
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.4e-28 Score=260.17 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=147.0
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC--CCCcccHHHHhcC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP--YTAVGTLRDQLIY 535 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p--~l~~~Ti~eni~~ 535 (1064)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|. ++.+..-. +-+..|-+|||.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------VAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------EehhhhcccCCCcccchHHHHHH
Confidence 47999999999999999999999999999999999999999999999983 44333222 2234689999976
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
-....+...++.++.+.++.+-.+|.+|++... .++|.||+-|+++|-|...+|+|||+||..+.-|+.-++
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 322222223356777888999999999998743 589999999999999999999999999999999998877
Q ss_pred HHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 616 RFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 616 ~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+-.+.+. +.+.|+|+|||+++.++ .||++++|+++
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 6554443 35799999999999986 69999999975
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=7.1e-29 Score=326.11 Aligned_cols=190 Identities=15% Similarity=0.166 Sum_probs=151.9
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC----CCCccEEEeCCCC-----ccccccEEEEecCCCCC-cc
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTA-VG 527 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~----~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~-~~ 527 (1064)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ ...|+.++||+|++.++ ..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 5799999999975 23466799999997655 56
Q ss_pred cHHHHhcCCCCCCC-------cCCCCCHHH-HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 528 TLRDQLIYPLTSDQ-------EVEPLTHGG-MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 528 Ti~eni~~~~~~~~-------~~~~~~~~~-i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
|++||+.++..... ..+++..++ +.++++.+||.+..+..+.+ .....|||||||||+|||+|+.+|++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988532110 000011123 34578999998766554321 12347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChh-H-HHhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA-L-VAFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~-~-i~~~D~Il~l~~~ 650 (1064)
++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ . ...+|++++|+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G 287 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCC
Confidence 999999999999999998887764 3899999999973 3 4579999999864
No 373
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.1e-29 Score=252.74 Aligned_cols=183 Identities=27% Similarity=0.373 Sum_probs=149.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++.+|++..- ++..++.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|.++|.+ ++.++.+-|+-
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4556666543 45689999999999999999999999999999999999999999999999854 22345566666
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
-.|-+ ...|+.||+.|-...+.. ...+.+.++++.+||.++.+-.. .+||-|||+||||||.++..++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~--------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPV--------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccch--------hhcchhHHHHHHHHHHHcCCCC
Confidence 55555 456999999985443221 34567999999999998766533 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA 639 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~ 639 (1064)
+.||||||++||.+.+..+-..+.+ .|-.||..||..--+.
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999999988877764 4888999999876543
No 374
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=5.7e-29 Score=264.30 Aligned_cols=178 Identities=24% Similarity=0.304 Sum_probs=140.6
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe-cCCCCCc-----c
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTAV-----G 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~-Q~p~l~~-----~ 527 (1064)
++++||||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+ ++.-+++++|+ |...+.. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 59999999999999999999999999999999999999999999999975 12224566554 3332211 1
Q ss_pred --cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 528 --TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 528 --Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
.|-..| |-.+ ...-.++....-+.++++.+++... ..||-|||.|+.||.||+|+|++|+||||
T Consensus 118 s~~v~~~I-y~Ip-----d~~F~~r~~~l~eiLdl~~~lk~~v--------r~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 118 SLEVLKLI-YEIP-----DDEFAERLDFLTEILDLEGFLKWPV--------RKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hHHHHHHH-HhCC-----HHHHHHHHHHHHHHhcchhhhhhhh--------hhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 222222 1111 1122355666777778887776643 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|-+||+..+..+.+.+++ .+.||+..||+++.+. -||||++++.+
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 999999999999988865 4899999999999765 79999999975
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.8e-28 Score=295.70 Aligned_cols=205 Identities=23% Similarity=0.299 Sum_probs=170.6
Q ss_pred CcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC---CccEEEeCCCC---cccc
Q 001511 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG---SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~---~~lr 512 (1064)
..+.++|+++..+++ +.+|+|||.++++||++||+||||||||||+++|+|-.+. .+|+|.+||+. +.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 458899999876553 6899999999999999999999999999999999999875 79999999954 4578
Q ss_pred ccEEEEecCCCC-CcccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 513 KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 513 ~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+..|||.||..+ +..||+|++.|.....- ....+.+++++++++.+|+.+..+....+. ....+|||||+||+
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~---~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP---GIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC---CCCccccchhhHHH
Confidence 899999999875 46799999988543221 122345678999999999987665543211 12579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~ 650 (1064)
||.-+++||++|+|||||||||..+..++.+.|++ .|+|||+.=|+++. ....|+++.|.+|
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 99999999999999999999999999998887764 49999999999874 4678999999865
No 376
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.9e-28 Score=260.92 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHH-HHhcccCCCCccEEEeC-----------C--C-C--cccc-ccEEEE
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLF-RVLGGLWPLVSGHIAKP-----------G--V-G--SDLN-KEIFYV 518 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl-~lL~Gl~~p~~G~I~i~-----------g--~-~--~~lr-~~i~~v 518 (1064)
+.++|+|+||+|++||+++|+||||||||||+ ..+.. +|++.+. + . . ...+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 33321 2322110 0 0 0 0111 234555
Q ss_pred ecCCCC---CcccHH---HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 519 PQRPYT---AVGTLR---DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 519 ~Q~p~l---~~~Ti~---eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
.|++.. +..++. +...+..... ......+..+.++.+++.+ ..++.| .+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRERLGFLVDVGLGYLTLSRSA--------PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHCCCCcccccCcc--------CcCCHHHHHHHHHHH
Confidence 665532 122332 2221100000 0111223357889999976 356666 389999999999999
Q ss_pred HHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 592 LFYHKP--KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||+.+| +++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+..||++++|+.+
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~ 214 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCC
Confidence 999998 59999999999999999998887753 589999999999999999999999543
No 377
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=3.8e-28 Score=318.35 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=150.8
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC---ccccccEEEEecCCCCC-cccHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTA-VGTLR 530 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~lr~~i~~v~Q~p~l~-~~Ti~ 530 (1064)
+.+|+|+|+.|++||.++|+||||||||||+|+|+|+.+|+ +|+|.++|.+ ...++.++||+|++.++ ..||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46999999999999999999999999999999999999998 9999999975 12367899999997654 57999
Q ss_pred HHhcCCCCCCCc----------CCCC--------C----------------HHHHHHHHHhcCChhHHhcCCCCcccCCC
Q 001511 531 DQLIYPLTSDQE----------VEPL--------T----------------HGGMVELLKNVDLEYLLDRYPPEKEINWG 576 (1064)
Q Consensus 531 eni~~~~~~~~~----------~~~~--------~----------------~~~i~~~l~~~~L~~~~~~~p~~~~~~~g 576 (1064)
||+.++...... ...+ . ...+.++++.+||++..+....+ ...
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~---~~~ 334 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD---EMI 334 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC---ccc
Confidence 999875321100 0000 0 01235678888887654332211 112
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1064)
..|||||||||+||++|+.+|++++|||||+|||+.+..++.+.+++ .|+|+|+++|++ +....+|+|++|+++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 47999999999999999999999999999999999999999887765 389999999986 345689999999864
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=2e-28 Score=242.90 Aligned_cols=130 Identities=43% Similarity=0.664 Sum_probs=112.1
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcc-cHHHHh
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVG-TLRDQL 533 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~-Ti~eni 533 (1064)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ...++.++|++|++.++.. |+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999864 2457899999999887765 69999
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
..++++.++++.+++.++.++... ....+||||||||++|||||+++|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIG----QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGT----SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccc----cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 135678889999988775554331 1125899999999999999999999999999996
No 379
>PRK12369 putative transporter; Reviewed
Probab=99.95 E-value=3.4e-26 Score=258.22 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=226.8
Q ss_pred HHHHHHhhHHHHHHhhcCCceehhHhhc-------CHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001511 765 AFLVVSRTWISDRIASLNGTTVKYVLEQ-------DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837 (1064)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~-------~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~ 837 (1064)
-++.++-+.+++++...++..-.+|-++ |.++|...+..+.++++.+..++..-.|++++|+++||+.||+|+
T Consensus 23 i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~ 102 (326)
T PRK12369 23 LLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSY 102 (326)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999999999999996 799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhh-----------CCchhH
Q 001511 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT-----------GQRGVA 906 (1064)
Q Consensus 838 ~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~-----------g~~g~~ 906 (1064)
++.|+. .|+.++||||||++||+.||+...+|+..+++++++++.|+.-|++.. ++..+.
T Consensus 103 l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~ 173 (326)
T PRK12369 103 LKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVW 173 (326)
T ss_pred HHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHH
Confidence 999996 457799999999999999999999999999999999999999999944 334456
Q ss_pred HHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 907 ILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKW 986 (1064)
Q Consensus 907 ~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~ 986 (1064)
..++|.++++.+...+.+|+.++..++|+.|++||+.|.|+.+|+|. | .|+..+++.|.++++..+.+++...
T Consensus 174 ~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~ 246 (326)
T PRK12369 174 IALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYG 246 (326)
T ss_pred HHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999 5 8999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHHHHH
Q 001511 987 LFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIHCLD 1039 (1064)
Q Consensus 987 ~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1064)
+.+++.+. ..|++.++++.++++.++. +.-.++.--+.+..+..+.-.+
T Consensus 247 ~l~~~~~~-y~~~~~i~p~li~aP~y~s---g~i~lG~l~Q~~~AF~~v~~al 295 (326)
T PRK12369 247 YFNIWLIS-FSQMMVIVPYLIMAPGLFA---GVITLGVLMQISNAFSQVRSSF 295 (326)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHHHHHH
Confidence 99999995 5899999999999999996 3334444445555555554433
No 380
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=2.1e-27 Score=251.39 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=128.6
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---------cEEEeCCCC---ccccccEEEEecCCCCCcccH
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---------GHIAKPGVG---SDLNKEIFYVPQRPYTAVGTL 529 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---------G~I~i~g~~---~~lr~~i~~v~Q~p~l~~~Ti 529 (1064)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.+.|.+ ...+++++++||+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999987663 356666644 12357899999999766
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY----HKPKFAILDEC 605 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEP 605 (1064)
++.. ..+++.++++. .+..++.| .+||||||||++|||+++ .+|+++|||||
T Consensus 89 -----~~~~--------~~~~~~~~l~~---~~~~~~~~--------~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 -----YSII--------SQGDVSEIIEA---PGKKVQRL--------SLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred -----eeEE--------ehhhHHHHHhC---CCccccch--------hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12356667666 23333333 489999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|++||+.....+.+.+++. +.|+|+|||+++.+..+|+++.+...
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~~ 191 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTMQ 191 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEec
Confidence 9999999999999888763 78999999999999999999999754
No 381
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=4.1e-25 Score=242.59 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=125.0
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhc-----c-cC----CCCccEEEeCCCCccccccEEEEecCCC-----
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-----G-LW----PLVSGHIAKPGVGSDLNKEIFYVPQRPY----- 523 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-----G-l~----~p~~G~I~i~g~~~~lr~~i~~v~Q~p~----- 523 (1064)
.-|+|||++|+.|+.++|+|+||||||||++-+. + ++ .|..++...+.. . -.++-+|-|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~--~-~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLE--H-IDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCccccccccc--c-cCceEEecCCcCCCCCC
Confidence 4699999999999999999999999999998652 1 11 133332211110 0 011333333331
Q ss_pred ------------------------------------------CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 524 ------------------------------------------TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 524 ------------------------------------------l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
....|+.|++.+.... ...++..++++.+||.
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~~~~~~~~~L~~vgL~ 159 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------PKIARKLQTLCDVGLG 159 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------hhHHHHHHHHHHcCCc
Confidence 1233555555442211 0124566788888987
Q ss_pred hH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccC
Q 001511 562 YL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHR 634 (1064)
Q Consensus 562 ~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~---P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~ 634 (1064)
+. .++.+ .+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.+++ .|.|+|+|||+
T Consensus 160 ~l~l~~~~--------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 160 YIKLGQPA--------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred hhhhcCcc--------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 63 45544 48999999999999999996 799999999999999999998887654 48999999999
Q ss_pred hhHHHhcCEEEEEeC
Q 001511 635 PALVAFHDVVLSLDG 649 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~ 649 (1064)
++.++.+|++++|..
T Consensus 232 ~~~i~~aD~ii~Lgp 246 (261)
T cd03271 232 LDVIKCADWIIDLGP 246 (261)
T ss_pred HHHHHhCCEEEEecC
Confidence 999999999999953
No 382
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=283.59 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=171.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..+..+|+++.|+..+.+++++|+.|++||+.|+.|+|||||||++++|.|..+|++|++.++|.+ .+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 568999999999654449999999999999999999999999999999999999999999999875 1367889
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
||+||+..+.. .|.+|.+.+-...++.....-.+.+...++.+++.+..++.. ..+|||+|+|+++|-|++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~--------~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQV--------RTYSGGNKRRLSFAIALI 714 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccch--------hhCCCcchhhHHHHHHHh
Confidence 99999877654 699999976443333222233456788999999998887753 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
.+|++++|||||+|+||.+++.+.+.+.+ .|+.+|++||.++..+ -|||+..|.++.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCe
Confidence 99999999999999999999998887654 4569999999999987 599999998753
No 383
>PRK12369 putative transporter; Reviewed
Probab=99.92 E-value=3.9e-22 Score=225.30 Aligned_cols=297 Identities=14% Similarity=0.147 Sum_probs=234.6
Q ss_pred HHHhhchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 93 AILLSEMGKMGARDLL--ALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 93 ~~~~p~~~~~~~~~ll--~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
+|+++.++. .+.+++ +++++.+..+.+++.++.|.+.|+|++..+ +.+.|+..+..+.+++++...+...
T Consensus 4 ~~~~~~~~~-~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~ 82 (326)
T PRK12369 4 SFFASKKWA-LWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATV 82 (326)
T ss_pred HHhcCCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666543 333444 467888888999999999999999999985 5778888887777766666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
..|+...+..+||+|+|+++.++|+. .++.++||||||++|++.+++....+...++.+++..+.|+.+|+
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW 153 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILW 153 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999996 235689999999999999999999999999999888887766665
Q ss_pred HH----------hhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Q 001511 244 SY----------ASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESH 312 (1064)
Q Consensus 244 ~~----------~~~~L~li~-l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~ 312 (1064)
.. ..|++.+++ +++..+...++.++|+++.+++.++|+.||++|..+.+++++.|. | .|.+.
T Consensus 154 ~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~ 226 (326)
T PRK12369 154 GLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPET 226 (326)
T ss_pred HhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHH
Confidence 41 123444444 556666677888999999999999999999999999999999887 3 56678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 001511 313 IQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQS 392 (1064)
Q Consensus 313 l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~ 392 (1064)
++++|+++.+++++..+...+.++++..+. .+...++.++..|.++.|.+ ++|... .....+.....+
T Consensus 227 l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~-~~~~i~p~li~aP~y~sg~i-----~lG~l~------Q~~~AF~~v~~a 294 (326)
T PRK12369 227 LIELFTGLRFNYFRLFLHYGYFNIWLISFS-QMMVIVPYLIMAPGLFAGVI-----TLGVLM------QISNAFSQVRSS 294 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-----chhHHH------HHHHHHHHHHHH
Confidence 899999999998888777777787777654 34556666777777777765 555322 223345566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 393 LGTLSISSRRLNRLSGYADRIHELMV 418 (1064)
Q Consensus 393 i~~l~~~~~~l~~~~~~~~Ri~ell~ 418 (1064)
++.+...+.++.+..+..+|+.++.+
T Consensus 295 ls~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 295 FSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999988765
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=5.8e-25 Score=235.45 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=132.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEe-CCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCC----C-ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVE-PGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGV----G-SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~-~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~----~-~~lr~~i~ 516 (1064)
.|+++|.. .|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+.. . ......|+
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47888887 55432 56777654 589999999999999999999995 55555555443211 0 23456799
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH--HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE--LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~--~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+++|++.... .+..++ ..+.++..+ .++..++.+++++.+ .+||||||||++||||++
T Consensus 80 ~~f~~~~~~~----~~~r~~--------gl~~~~~~~~~~l~~g~l~~~l~~~~--------~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 80 FTFQLGGKKY----RVERSR--------GLDYDQFTRIVLLPQGEFDRFLARPV--------STLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEECCeEE----EEEEec--------CCCHHHHHHhhhhhhcchHHHhcCCc--------cccCHHHHHHHHHHHHHH
Confidence 9999884221 111122 122233322 244455666666655 489999999999999998
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 595 H----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 595 ~----------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
. +|+++||||||++||+.+...+.+.+++ .+.|+|+|||+++.+. .+|++++++++|+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6799999999999999999998877654 3889999999999775 5899999987763
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=4.4e-25 Score=242.15 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=134.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcccCCCC-ccEEEeCCC-C---c----c-ccccEEEEecCCCC----------CcccHH
Q 001511 471 GSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGV-G---S----D-LNKEIFYVPQRPYT----------AVGTLR 530 (1064)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~-~---~----~-lr~~i~~v~Q~p~l----------~~~Ti~ 530 (1064)
..+++||||||||||||+++|++++.++ .|++...|. + . . .+.++++++|++.. +..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468877664 2 0 1 23489999999631 245888
Q ss_pred HHhcCCCCCCC-c-CCCCCHHHHHHHHHhcCCh--------------------hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 531 DQLIYPLTSDQ-E-VEPLTHGGMVELLKNVDLE--------------------YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 531 eni~~~~~~~~-~-~~~~~~~~i~~~l~~~~L~--------------------~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+|+..+..... . ......+++.++++.+++. +..+..| .+||||||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--------~~lS~G~~qr~~ 176 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--------TELSGGQRSLVA 176 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--------cccCHHHHHHHH
Confidence 88876543211 0 1223567899999999985 2222323 589999999999
Q ss_pred HHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 589 MARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 589 IARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|||||+ .+|+++|+||||++||+...+.+.+.+++ .|.|+|+|||+.+....||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 999997 57899999999999999999999988875 4889999999999999999999886
No 386
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=7.1e-25 Score=238.89 Aligned_cols=181 Identities=20% Similarity=0.305 Sum_probs=120.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----------------CCcc--------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----------------LVSG-------- 500 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----------------p~~G-------- 500 (1064)
|+++|-. +| .+..++++++ |++++|+||||||||||+++|++++. +++|
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 4555532 24 3456788877 89999999999999999999985543 3333
Q ss_pred EEEeCCCC---------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhc--CCC
Q 001511 501 HIAKPGVG---------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR--YPP 569 (1064)
Q Consensus 501 ~I~i~g~~---------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~p~ 569 (1064)
+|.+++.+ ..+++.++++||++.+... ..+.+++...++.+++...... .+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------------~~t~~ei~~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------------NVTKNDVMNLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------------EcCHHHHHHHHHHcCCCCCCCcEEEEc
Confidence 33332211 0122334444443332210 1234455555555555321000 000
Q ss_pred ----------CcccCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEcc
Q 001511 570 ----------EKEINWGDELSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1064)
Q Consensus 570 ----------~~~~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH 633 (1064)
+.....+.+||||||||++||||++ .+|+++|+||||++||+.+++.+.+.+++. +.|+|++||
T Consensus 140 g~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h 219 (243)
T cd03272 140 GKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTF 219 (243)
T ss_pred CchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0001124589999999999999996 368999999999999999999999888764 789999999
Q ss_pred ChhHHHhcCEEEEEeC
Q 001511 634 RPALVAFHDVVLSLDG 649 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~ 649 (1064)
+.+....||++++++-
T Consensus 220 ~~~~~~~~d~i~~l~~ 235 (243)
T cd03272 220 RPELLEVADKFYGVKF 235 (243)
T ss_pred CHHHHhhCCEEEEEEE
Confidence 9998889999999973
No 387
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.92 E-value=1.5e-23 Score=240.89 Aligned_cols=248 Identities=13% Similarity=0.157 Sum_probs=218.2
Q ss_pred HHHHhhHHHHHHhhcCCceehhHhh-------cCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 767 LVVSRTWISDRIASLNGTTVKYVLE-------QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839 (1064)
Q Consensus 767 ~lv~Rt~ls~~va~l~g~~v~~iv~-------~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~ 839 (1064)
+.+.-+.+++++...++..-.+|-+ +|.+.|.+.+..+..++..+..++.+-.|+++++.++||+.||+|..+
T Consensus 100 l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~ 179 (409)
T PRK11098 100 VTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMA 179 (409)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999899988 599999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCC--------chh----HH
Q 001511 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQ--------RGV----AI 907 (1064)
Q Consensus 840 ~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~--------~g~----~~ 907 (1064)
.|++++ +++||||||++|+++||+...+|..++++++++++-|+.-|+..-|. ..| ..
T Consensus 180 ~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~ 249 (409)
T PRK11098 180 HWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIA 249 (409)
T ss_pred HHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHH
Confidence 999654 58899999999999999999999999999999999999999886553 233 35
Q ss_pred HHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 908 LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWL 987 (1064)
Q Consensus 908 ~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~ 987 (1064)
.+.|.++++.+...+.+|..++..++|+.|++||+.|.|+.+||| +.|+.++++.|.++++..+++++....
T Consensus 250 aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~ 321 (409)
T PRK11098 250 AIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFHYMY 321 (409)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999 669999999999999999999999999
Q ss_pred HHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHH
Q 001511 988 FGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIH 1036 (1064)
Q Consensus 988 ~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1064)
.+++.+.. .|+..++++.++++.++. +.-.++.--+++..+..+.
T Consensus 322 l~~f~~~y-~~~~~i~P~iv~aP~y~a---G~ItlG~l~Q~~~AF~~V~ 366 (409)
T PRK11098 322 FNIARILY-LQVDNVFGLFLLFPSIVA---GTITLGLMTQITNVFGQVR 366 (409)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHHH
Confidence 99999965 999999999999999886 3333333334444444433
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.1e-25 Score=251.43 Aligned_cols=255 Identities=19% Similarity=0.224 Sum_probs=168.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|..++.+..|. ++.+|++-++++..|.++||||+||+|||||+|+|+. |.|..-...++.|..--..-|+
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 45688999999884 7889999999999999999999999999999999998 5554333222222110011111
Q ss_pred CCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~-~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
. +-.++-+..+..-.. ......+.+++.. +|..+|..+-....|- .+||||+|.|+++||||..+||||
T Consensus 151 ~-l~~D~~~~dfl~~e~--~l~~~~~l~ei~~~~L~glGFt~emq~~pt-------~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 151 V-LESDTERLDFLAEEK--ELLAGLTLEEIYDKILAGLGFTPEMQLQPT-------KSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred h-hhccHHHHHHHHhhh--hhhccchHHHHHHHHHHhCCCCHHHHhccc-------cccCcchhhHHHHHHHHhcCCCEE
Confidence 1 112232332222110 0001113455666 8889999877777674 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcccccccccccccccchh
Q 001511 601 ILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETD 679 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1064)
+|||||+.||..+..++.+.|.....|+|+||||-+.+. .|.-|+.+++.. ...+.++++.++.+..+......-+-+
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k-L~~YkGN~~~Fvk~k~E~~~n~qrefe 299 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK-LDYYKGNYSQFVKTKPEAKKNQQREFE 299 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh-hhhhcCcHHHHHHhhHHhhhhhhhhcc
Confidence 999999999999999999999998999999999999875 466677776531 111233444455444332221111112
Q ss_pred hhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 680 RQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 680 r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
.+...-..-+.+.......+.+.+..++..+.|-.
T Consensus 300 ~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~k 334 (582)
T KOG0062|consen 300 VQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGK 334 (582)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhHHHHHHHhcc
Confidence 22212223455556666666666667777776653
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=8.8e-25 Score=249.97 Aligned_cols=193 Identities=18% Similarity=0.258 Sum_probs=160.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.+.++||+|.|+++..+++++||-|..++++++|||||||||||+|++.|.+.|+.|.|...-. .++++..|+
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----~~~~~y~Qh 461 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----NKLPRYNQH 461 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----ccchhhhhh
Confidence 467999999999987778999999999999999999999999999999999999999999975432 245555565
Q ss_pred CC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
.. -...+.-|++.-.... ....+++..++.++||.......|. .+||+|||.||.+||+.+..|.
T Consensus 462 ~~e~ldl~~s~le~~~~~~~~-----~~~~e~~r~ilgrfgLtgd~q~~p~-------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 462 LAEQLDLDKSSLEFMMPKFPD-----EKELEEMRSILGRFGLTGDAQVVPM-------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hHhhcCcchhHHHHHHHhccc-----cchHHHHHHHHHHhCCCccccccch-------hhcccccchhHHHHHHHhcCCc
Confidence 42 2234666666532221 1356788889999999865555553 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+|+|||||++||.++...+.+.+.+..-++|+||||..++. .++.|.+.++++
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCc
Confidence 99999999999999999999999999889999999999986 578888887653
No 390
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.90 E-value=8e-21 Score=218.55 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFL-------RRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1064)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~i~a~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1064)
++++++.+..+.+++.++.|.+.|+|++.. ++.+.|++.+..++.++++...+.+...|+.+.+..+||++||
T Consensus 95 ~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT 174 (409)
T PRK11098 95 ALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMN 174 (409)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888889999999999999999997 4777888888777777776666778889999999999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh
Q 001511 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA-----------SPK 249 (1064)
Q Consensus 181 ~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~-----------~~~ 249 (1064)
+++.++|++.. +++||||||++|++++++...++...++.++++.+.|+.+|+... .|+
T Consensus 175 ~~yl~~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg 244 (409)
T PRK11098 175 EYYMAHWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPY 244 (409)
T ss_pred HHHHHHHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCch
Confidence 99999998431 456899999999999999999999999999888877766665421 223
Q ss_pred HHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001511 250 YVF-WILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1064)
Q Consensus 250 L~l-i~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1064)
+.+ .++++..+...++.++|+++.+++.++|+.||++|..+.++++|+| +.|...++++|+++.+++.+..
T Consensus 245 ~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~ 316 (409)
T PRK11098 245 GLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLY 316 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4455666677788899999999999999999999999999999998 4577788999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1064)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~ 408 (1064)
......++++..+. .....++.++..|.++.|.+ ++|... .....+.....+++.+...+.++.+..+
T Consensus 317 ~~~~~l~~f~~~y~-~~~~i~P~iv~aP~y~aG~I-----tlG~l~------Q~~~AF~~V~~als~~v~sy~~lael~A 384 (409)
T PRK11098 317 FHYMYFNIARILYL-QVDNVFGLFLLFPSIVAGTI-----TLGLMT------QITNVFGQVRGSFQYLINSWTTIVELLS 384 (409)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCc-----chhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777554 33445666666666777765 566422 2234455666788888889999999999
Q ss_pred HHHHHHHHHhhch
Q 001511 409 YADRIHELMVISR 421 (1064)
Q Consensus 409 ~~~Ri~ell~~~~ 421 (1064)
..+|+.++.+.-.
T Consensus 385 ~~~RL~~F~~~l~ 397 (409)
T PRK11098 385 IYKRLRSFEAALD 397 (409)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=7.9e-24 Score=225.31 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=124.6
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHh----cccCCCCccEEEeCCC---CccccccEEEEecCCC-----CC-cccHH
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVL----GGLWPLVSGHIAKPGV---GSDLNKEIFYVPQRPY-----TA-VGTLR 530 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL----~Gl~~p~~G~I~i~g~---~~~lr~~i~~v~Q~p~-----l~-~~Ti~ 530 (1064)
.++++.+| +++|+||||||||||+++| .|..+|+.|.+..+.. ....+..+++++|++. .. ..|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34566677 9999999999999999999 4999998887652211 0233568999999982 11 13888
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH------HHHHHHHccCCCEEEEeC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR------LGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR------laIARAL~~~P~iliLDE 604 (1064)
||+.+.. .+++.+.+ ++.+ .+||+||+|| ++||||++.+|+++++||
T Consensus 95 ~~~~~~~----------~~~~~~~~---------~~~~--------~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 95 ENVIFCH----------QGESNWPL---------LDMR--------GRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hceeeec----------hHHHHHHH---------hcCc--------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 8887641 22233332 4444 4899999996 789999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 605 CTSAVTTDMEE-RFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 605 PTSaLD~~~~~-~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||++||+.... .+.+.+++ . +.|+|+|||+++.+..+|++++++++|
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 99999999998 88877754 2 789999999999998999999998765
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.4e-24 Score=232.25 Aligned_cols=181 Identities=17% Similarity=0.089 Sum_probs=128.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cccc-ccEEEEecC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-KEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr-~~i~~v~Q~ 521 (1064)
.|+++|.. .| ++..+++++++ ++++|+|||||||||++++|... .|.+ ...+ +++++++|+
T Consensus 5 ~l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~~~~~i~~~~~~ 67 (212)
T cd03274 5 KLVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKMRQKKLSDLIHN 67 (212)
T ss_pred EEEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHhhhhhHHHHhcC
Confidence 36677765 45 45679999988 89999999999999999999722 2322 1122 468889988
Q ss_pred CCCCc-ccHHHHhcCCCCCC--------CcCCCCCHH--HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 522 PYTAV-GTLRDQLIYPLTSD--------QEVEPLTHG--GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~--~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
...+. .|.++++.+..... +........ ...++++.+++++..++.+ ..||+|||||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~--------~~lS~G~~~r~~la 139 (212)
T cd03274 68 SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI--------SNLSGGEKTLSSLA 139 (212)
T ss_pred CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch--------hhcCHHHHHHHHHH
Confidence 76543 36666555432110 000000000 0123445555554444433 47999999999999
Q ss_pred HHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 591 RLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 591 RAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
||++. +|+++++||||++||+.+...+.+.+++. +.|+|++||+.+..+.||++++|..
T Consensus 140 ~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 140 LVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99963 58999999999999999999999988764 6799999999988899999999975
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=1.3e-23 Score=260.89 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=161.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--CCccEEEeCCCC---ccccccEEEEecCC-CCCcccHH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGVG---SDLNKEIFYVPQRP-YTAVGTLR 530 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p~~G~I~i~g~~---~~lr~~i~~v~Q~p-~l~~~Ti~ 530 (1064)
.+.+|+|||=-++||..+||+|+||||||||+++|+|=.. ..+|+|.++|.+ +..++.+|||.|++ +++..||+
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 3579999999999999999999999999999999999653 258999999975 45788999999976 56778999
Q ss_pred HHhcCCCCCC--CcCCC-CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC-CEEEEeCCC
Q 001511 531 DQLIYPLTSD--QEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP-KFAILDECT 606 (1064)
Q Consensus 531 eni~~~~~~~--~~~~~-~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P-~iliLDEPT 606 (1064)
|-+.|....+ ...+. +..+.++++++.++|+++.+.... ..|..||..||+|+.||--|+.|| .||+|||||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG----~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG----LPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc----CCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 9998854322 11111 223668899999999988877542 235789999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCceE
Q 001511 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~~ 654 (1064)
||||..+...+++.+++ .|+||+..=|.++. .+..|+++.|+.+|..+
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence 99999999998888775 59999999999984 47899999999877544
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=9.5e-23 Score=237.40 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=154.0
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cccccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
.+.++++|++.. ..++|+||++.+||++||.|--|||+|-|+++|.|..++.+|+|.++|.+ +.++..
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 346788888752 25899999999999999999999999999999999999999999999964 245678
Q ss_pred EEEEecCCC----CCcccHHHHhcCCCCCC---C-cCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPY----TAVGTLRDQLIYPLTSD---Q-EVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~----l~~~Ti~eni~~~~~~~---~-~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
|+|||.|-- +...+|++|+..+.... . ... ....+.+.+..+.+++.. |. .. ....+||||-||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-----~s-~~-~~v~~LSGGNQQ 408 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-----PS-PE-QPIGTLSGGNQQ 408 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-----CC-cc-chhhcCCchhhh
Confidence 999998763 34579999998872211 0 111 111223344445554431 11 00 123589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|.|||.|..+|++|||||||.|+|.-++.+|++++++ .|+++|+||-++.++ ..||||+||.++
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988765 599999999998866 589999999864
No 395
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=5.6e-24 Score=212.69 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=153.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||.... -|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.+ .++.++-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 46778887643 3667899999999999999999999999999999985 78999999986 345566778
Q ss_pred EecCC-CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc-
Q 001511 518 VPQRP-YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH- 595 (1064)
Q Consensus 518 v~Q~p-~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~- 595 (1064)
+.|+. ..|...|...+....+. +...+++.+++..+++.|.+.|.. .+|||||.|||-+|-.++.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~-----~~~a~~i~~i~~~L~l~DKL~Rs~--------~qLSGGEWQRVRLAav~LQv 143 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPD-----KTRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 143 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCch-----HHHHHHHHHHHhhhcccchhhhhh--------hhcCcccceeeEEeEEEEEe
Confidence 88765 35667888877764332 234456778888999988877765 3899999999999988875
Q ss_pred ----CC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001511 596 ----KP--KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1064)
Q Consensus 596 ----~P--~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1064)
|| +++|+|||.++||...+..+.+.+.+ .|.+|||.+||++ +++++|+++.+..+
T Consensus 144 ~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG 208 (248)
T COG4138 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRG 208 (248)
T ss_pred cCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcC
Confidence 33 79999999999999999887776654 5999999999998 78999999988764
No 396
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1e-22 Score=222.98 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=123.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c--------cccccEEEEecCCCC--CcccHHHHh-cC
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S--------DLNKEIFYVPQRPYT--AVGTLRDQL-IY 535 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~--------~lr~~i~~v~Q~p~l--~~~Ti~eni-~~ 535 (1064)
.+++|+||||||||||+.+|.++..+..|++..++.+ . ...-.+.|..|++.. +..++++.. .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877877654321 0 111234444444321 122222211 11
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhH--------------HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC----C
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYL--------------LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK----P 597 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~--------------~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~----P 597 (1064)
... ....+.+++.+.++.+|+..+ .+..|.........+||||||||++||||++.+ |
T Consensus 103 ~in----gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p 178 (247)
T cd03275 103 RIN----GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPA 178 (247)
T ss_pred EEC----CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCC
Confidence 111 112456677889999998532 222231111112358999999999999999864 9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~---g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+++|+||||++||+.....+.+.+++. |.|+|+|||+.+.+..||+++++..++
T Consensus 179 ~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 179 PFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 999999999999999999988877653 789999999999999999999998653
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.5e-22 Score=222.81 Aligned_cols=181 Identities=23% Similarity=0.285 Sum_probs=149.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.+-+.||+|.||+.++++++++|-|.-..+++||||||.|||||+++|.|-++|+.|+.+-+- |-+||+.-|.
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----rL~iG~FdQh 658 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----RLRIGWFDQH 658 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----eeeeechhhh
Confidence 45788999999999999999999999999999999999999999999999999999999987543 4579998887
Q ss_pred CC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
.. ....|-.|.+.-... ...++....|-.+||........ -..||||||-||++|-.-+..|+
T Consensus 659 ~~E~L~~Eetp~EyLqr~FN-------lpyq~ARK~LG~fGL~sHAHTik-------ikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 659 ANEALNGEETPVEYLQRKFN-------LPYQEARKQLGTFGLASHAHTIK-------IKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hHHhhccccCHHHHHHHhcC-------CChHHHHHHhhhhhhhhccceEe-------eeecCCcchHHHHHHHHhcCCCC
Confidence 53 123465665543211 34556777788888764332211 13699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
+|||||||++||.++...+-+++.+.+-.||+||||..++...
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVET 767 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeec
Confidence 9999999999999999999999999989999999998877643
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=1.4e-22 Score=231.95 Aligned_cols=220 Identities=19% Similarity=0.264 Sum_probs=148.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...+.++|+++.|. +.++++|++|++.+|+.+||+|+|||||||++++|.|-..|..-++.+ ..+.++
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~-----------y~ls~e 140 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF-----------YLLSRE 140 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch-----------hhhccc
Confidence 35699999999985 678999999999999999999999999999999999988885554432 122221
Q ss_pred CCCCcc-cHHHHh----------cCCCCC-C---CcCCCCCHHHHHHHHHhcCChhHHhc-------CCC--CcccCCCC
Q 001511 522 PYTAVG-TLRDQL----------IYPLTS-D---QEVEPLTHGGMVELLKNVDLEYLLDR-------YPP--EKEINWGD 577 (1064)
Q Consensus 522 p~l~~~-Ti~eni----------~~~~~~-~---~~~~~~~~~~i~~~l~~~~L~~~~~~-------~p~--~~~~~~g~ 577 (1064)
-.-... ++..-+ .+-... . +......-..+.+-+..++.+.+-.+ +.. .....|..
T Consensus 141 ~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 110001 111111 100000 0 00000111122333333333322111 000 00112456
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEccChhHHH-hcCEEEEEeCCCceEE
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT-SCITISHRPALVA-FHDVVLSLDGEGEWRV 655 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~-TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~ 655 (1064)
.||||||.|+++||+|+.+|++|+|||||++||.++..++-+.|.+... ++++++|.-.++. .|.+|+.++++. ..-
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kk-l~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKK-LIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccc-eee
Confidence 8999999999999999999999999999999999999999999999877 8999999999885 699999999765 334
Q ss_pred eecCCCccccccccccccc
Q 001511 656 HDKRDGSSVVTKSGINMIK 674 (1064)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (1064)
.+++++.++..+++..+.+
T Consensus 300 y~Gnydqy~~tr~E~~~~q 318 (614)
T KOG0927|consen 300 YEGNYDQYVKTRSELEENQ 318 (614)
T ss_pred ecCCHHHHhhHHHHHhHHH
Confidence 5677777777666544433
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=1.5e-21 Score=245.30 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
.+||||||||++|||+|+++| +++||||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+|++|..
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp 907 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGP 907 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecC
Confidence 589999999999999999999 99999999999999999998887654 48999999999999999999999953
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=1.8e-21 Score=253.50 Aligned_cols=191 Identities=26% Similarity=0.297 Sum_probs=134.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHH---------HhcccCCCC---------------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFR---------VLGGLWPLV--------------- 498 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~---------lL~Gl~~p~--------------- 498 (1064)
+.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|..++.
T Consensus 599 ~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 599 GTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred CeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 3578888763 3699999999999999999999999999999 566643321
Q ss_pred ---------ccEEEeCCCCcccc--------------ccEEEEecC------------------C--C------------
Q 001511 499 ---------SGHIAKPGVGSDLN--------------KEIFYVPQR------------------P--Y------------ 523 (1064)
Q Consensus 499 ---------~G~I~i~g~~~~lr--------------~~i~~v~Q~------------------p--~------------ 523 (1064)
++.+.+-|.-+++| ....|.||. | +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 11122111000111 112233332 1 0
Q ss_pred ------CC-cccHHHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 524 ------TA-VGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 524 ------l~-~~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.+ ..||.|++.++...... ..+...+++ ++++.+|+.++ .++.+ .+||||||||++||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~--------~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL--------SSLSGGEIQRLKLAYE 823 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc--------ccCCHHHHHHHHHHHH
Confidence 11 23778887765332100 011122334 57888899876 56655 4899999999999999
Q ss_pred Hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 593 FY---HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 593 L~---~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|+ .+|+++||||||++||+...+.+.+.+++ .|.|+|+|||+++.++.+|++++|.
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 98 69999999999999999999998887754 5899999999999999999999995
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=211.88 Aligned_cols=173 Identities=25% Similarity=0.360 Sum_probs=135.2
Q ss_pred eeeeceEEE-----eCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC-CCcccHHHHh
Q 001511 460 LVENLTLKV-----EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY-TAVGTLRDQL 533 (1064)
Q Consensus 460 ~L~~vsl~i-----~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~-l~~~Ti~eni 533 (1064)
.+.++.|++ ..||+++++||||-||||+.++|+|.++|++|. ..+ -+++|=||--. -+.+||.+-+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~------~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EED------LKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--Ccc------ceEeecceeecCCCCCcHHHHH
Confidence 344555554 567889999999999999999999999999998 111 26889898532 3678999877
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~ 613 (1064)
.-...... .+.---.++++-++|++.+++.. .+|||||.||||||-||.+++|+.+||||++.||.+.
T Consensus 423 ~~~~~~~~----~~s~~~~ei~~pl~l~~i~e~~v--------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAF----GSSYFKTEIVKPLNLEDLLERPV--------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhc----ccchhHHhhcCccchHHHHhccc--------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 64332210 11112346788889998888754 3799999999999999999999999999999999987
Q ss_pred HHHHHHHH----HhcCcEEEEEccChhHHHh-cCEEEEEeCCCc
Q 001511 614 EERFCAKV----RAMGTSCITISHRPALVAF-HDVVLSLDGEGE 652 (1064)
Q Consensus 614 ~~~l~~~l----~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~ 652 (1064)
+-.+-+.+ .+.++|.++|-||+-.+.+ +|+++++++..+
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg 534 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPG 534 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCC
Confidence 76554444 4468999999999998875 899999998643
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7.7e-21 Score=216.84 Aligned_cols=192 Identities=19% Similarity=0.243 Sum_probs=160.5
Q ss_pred CCcEEEEeeEEEcCCCC-eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEec
Q 001511 442 ANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~-~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
.+.+++.+|+|.|+.+. +.+.++++.++.-+++++||+||+||||++|++.|-..|..|.+.+.+ |.+|+|-+|
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----r~ri~~f~Q 434 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----RLRIKYFAQ 434 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----cceecchhH
Confidence 56899999999997766 799999999999999999999999999999999999999999998776 568999999
Q ss_pred CCCCC-cccH--HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 521 RPYTA-VGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 521 ~p~l~-~~Ti--~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
...-+ ...+ .|-..-.. +...++++.+.|..+|++.-+...+. ..||||||=||++|.+...+|
T Consensus 435 hhvd~l~~~v~~vd~~~~~~------pG~~~ee~r~hl~~~Gl~g~la~~si-------~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSF------PGKTEEEIRRHLGSFGLSGELALQSI-------ASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhC------CCCCHHHHHHHHHhcCCCchhhhccc-------cccCCcchhHHHHHHHhcCCC
Confidence 75322 2122 11111111 11378899999999999754433332 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
.+|+|||||+.||.++...+-++++..+-.||+||||.+++. .|+.+++.+++.
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred cEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence 999999999999999999999999999889999999999997 589999998764
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.3e-20 Score=199.76 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=115.1
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHh
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQL 533 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~Q~p~l~~~Ti~eni 533 (1064)
++++++++.+| +.+|+||||||||||+.+|.-......+ ....|.. ..-...|.+.+|+...+. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 7799999999999999998744322211 0001210 111346888888765443 1
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCC
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPKFAILDECTSAV 609 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEPTSaL 609 (1064)
.. .....+++.++++. .+..++.+ .+||+|||||++||+|+ +.+|+++||||||++|
T Consensus 84 ----~~----~~~~~~~~~~~l~~---~~~~~~~~--------~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 84 ----PL----CVLSQDMARSFLTS---NKAAVRDV--------KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred ----cC----CHHHHHHHHHHhcc---ccccCCcc--------cccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 10 11123456666655 33333333 48999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHhc------CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 610 TTDMEERFCAKVRAM------GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 610 D~~~~~~l~~~l~~~------g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
|......+.+.+++. +.|+|++||+++.+...|+|-++..
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~ 190 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRM 190 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEe
Confidence 999998888766541 3589999999999988899999964
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=207.50 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=159.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~ 513 (1064)
...++++|+++.-..+.+.++||||+|.+||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.+. ..+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 45799999999755556899999999999999999999999999999999999999999999999652 1235
Q ss_pred cEEEEecCCC----CCcccHHHHhcCCCCCCC---cCCCCCH----HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 514 EIFYVPQRPY----TAVGTLRDQLIYPLTSDQ---EVEPLTH----GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 514 ~i~~v~Q~p~----l~~~Ti~eni~~~~~~~~---~~~~~~~----~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
.++|||.|.. .+..|+.||+........ ...-... +...++.+.+++.. .-| .....+||||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~---~~~----~~~a~~LSGG 407 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA---PSP----DAPARSLSGG 407 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC---CCC----CcchhhcCCc
Confidence 7999999984 456799999986543211 0001122 23344445544431 111 0123589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+||+-+||-|.++|++||+.+||-|||....+.+.+.+. +.|+.|++||-+++.+ ..+|+|.||.++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 9999999999999999999999999999999999988764 3599999999999876 579999999875
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=6.7e-20 Score=230.15 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=66.8
Q ss_pred CCcChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 577 DELSLGEQQRLGMARLFYH---KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~---~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
.+|||||+||++|||+|+. +|+++||||||++||+.....+.+.+++ .|.|+|+|+|++..+..+|+|++|.
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lg 904 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLG 904 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEec
Confidence 5899999999999999997 5999999999999999999998887754 4899999999999999999999995
No 406
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=9.1e-18 Score=172.24 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=137.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------ 509 (1064)
...|++.++.|.|+...|++-|+|++++.|.+..+||.||||||||+|+|+|-.-...|.|.+.|.+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 45799999999999888999999999999999999999999999999999998877789999998641
Q ss_pred -----cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhc--CC--CCcccCC-CCCc
Q 001511 510 -----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR--YP--PEKEINW-GDEL 579 (1064)
Q Consensus 510 -----~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~p--~~~~~~~-g~~L 579 (1064)
++++..++--.-|.-...++ .+++.-++-.++..+ +. .|.+..| -..+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sa----------------------e~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkv 148 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISA----------------------EHMIFGVGGDDPERREKLIDILDIDLRWRMHKV 148 (291)
T ss_pred eEecccccccccccccccccccccH----------------------HHHHhhccCCChhHhhhhhhheeccceEEEeec
Confidence 11222222111111111122 223333333222111 00 1222333 3479
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|-|||+||.|+.-|++.=++|+|||.|--||...+..+++.+++ +|.||+..||-..-+ .-..+++.+.++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~G 224 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSG 224 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCC
Confidence 99999999999999999999999999999999999999988764 599999999976644 357778888754
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=2.4e-18 Score=182.68 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=99.8
Q ss_pred eeeeceEEEeCCC-EEEEEcCCCCchhHHHHHhc--------ccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHH
Q 001511 460 LVENLTLKVEPGS-NLLITGPNGSGKSSLFRVLG--------GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge-~vaIvG~sGsGKSTLl~lL~--------Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~ 530 (1064)
.+.++||++.+|+ +++|+||||||||||+|.|. |.+-|....+ .++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------~~~~~~~~~~------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------SLPVFENIFA------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------cCcCccEEEE-------
Confidence 3567999999996 69999999999999999998 5444432211 1233333210
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD 610 (1064)
..+..+.++.. -..+|+||||+..|++++ .+|+++++||||+++|
T Consensus 78 --------------------------~lg~~~~l~~~--------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 78 --------------------------DIGDEQSIEQS--------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------ecCchhhhhcC--------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 01111111111 137999999999999884 8999999999999999
Q ss_pred HHHHHHHHH----HHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 611 TDMEERFCA----KVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 611 ~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.....+.. .+.+.|.|+|++||+.+....+|+++.+++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~ 165 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVEN 165 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEE
Confidence 998877643 234458999999999888888999999975
No 408
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.74 E-value=1.6e-17 Score=173.33 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=65.8
Q ss_pred cChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 579 LSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||||++|||+++ .+|+++|+||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+++.++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~ 173 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFV 173 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEe
Confidence 9999999999999995 79999999999999999999988887754 368999999999999999999999863
No 409
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=2.2e-17 Score=183.88 Aligned_cols=172 Identities=25% Similarity=0.392 Sum_probs=133.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--------CCCCccEEEeCCCCccccccEEEEecC--CCCCccc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--------WPLVSGHIAKPGVGSDLNKEIFYVPQR--PYTAVGT 528 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--------~~p~~G~I~i~g~~~~lr~~i~~v~Q~--p~l~~~T 528 (1064)
.+++|+||++++|+.++|+|+||+||||++++|+|. |.|++|.|.++-.. --+++|-+ |.+-..|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-----~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-----VSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-----hhhccCcccccccCchh
Confidence 699999999999999999999999999999999986 57899999876421 23455543 3333347
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
+-|++.--. -+.....++|..+|+.+- +-+.+. .+||-|||.|..||+++..+|.+++.||--|
T Consensus 472 ilehl~s~t--------GD~~~AveILnraGlsDAvlyRr~f-------~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 472 ILEHLRSKT--------GDLNAAVEILNRAGLSDAVLYRRKF-------SELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred HHHHHhhcc--------CchhHHHHHHHhhccchhhhhhccH-------hhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 878775321 122346689999999753 222222 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 608 AVTTDMEERFCA----KVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
.||+.+...+.+ +.++.|.|+++||||.+.... -|.++.+.-+
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence 999998877654 445679999999999998864 5887777543
No 410
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.6e-17 Score=185.10 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=72.3
Q ss_pred HhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhH
Q 001511 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1064)
Q Consensus 564 ~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~ 637 (1064)
.+..|.+....+...|||||+||+++|++++. +|+++|+||||++||+.....+.+.+++. +.|+|+|||++..
T Consensus 156 ~~~~p~e~~~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~ 235 (276)
T cd03241 156 FSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV 235 (276)
T ss_pred eecCCCCccchhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH
Confidence 34445433333445799999999999997654 99999999999999999999999888753 7899999999998
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
...+|+++.++++
T Consensus 236 ~~~~d~~~~l~~~ 248 (276)
T cd03241 236 AAMADNHFLVEKE 248 (276)
T ss_pred HHhcCcEEEEEEe
Confidence 8899999999764
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.73 E-value=7.9e-18 Score=189.63 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=125.8
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC--------------------cccc--ccEEEEecCCCC
Q 001511 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG--------------------SDLN--KEIFYVPQRPYT 524 (1064)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~--------------------~~lr--~~i~~v~Q~p~l 524 (1064)
.++|+.+||+|+||-||||-+|+|+|.+.|.=|+-.-+ +.+ .++| .++.||--=|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 57899999999999999999999999999987764321 100 0111 123333323444
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
..|+++|-+.-... .....++.+.++|...+++-. .+|||||-||+|||-|+++++++.++||
T Consensus 177 ~KG~v~elLk~~de---------~g~~devve~l~L~nvl~r~v--------~~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 177 VKGKVGELLKKVDE---------RGKFDEVVERLGLENVLDRDV--------SELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred hcchHHHHHHhhhh---------cCcHHHHHHHhcchhhhhhhh--------hhcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 56788887653211 124567888889988888754 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|||-||...+-..-+.+++ .++++|+|.||+..+.. +|.|.++-++
T Consensus 240 psSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred CcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 9999999877665555443 37999999999999874 8999888775
No 412
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=1.4e-16 Score=170.97 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=100.3
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEE---------EeCCCCccccccEEEEecCCCCCcccHHH
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I---------~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
++++.+++.+| ..+|+||||||||||+.+|.-..-...... .-.|.+ ...|-..++...- .=..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~---~~~v~~~~~~~~~--~~~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD---EGTIEIELYGNPG--NIQVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC---cEEEEEEEEeCCC--ccccC
Confidence 35566666555 668999999999999999866552211110 011110 1122222222110 00112
Q ss_pred HhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc--cCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCC
Q 001511 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--INWGDELSLGEQQRLGMARLF----YHKPKFAILDEC 605 (1064)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~--~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEP 605 (1064)
|+++.. ..+++.++..... .+.+.+++.+.+ .....+||||||||+.+|+++ +.+|+++|+|||
T Consensus 88 n~~~~~---------~q~~~~~~~~~~~-~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFL---------PQDRVGEFAKLSP-IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred CceEEE---------chHHHHHHHhCCh-HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 222211 1222222222211 123333332221 123458999999999877554 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---c-C-cEEEEEccChhHH-HhcC--EEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA---M-G-TSCITISHRPALV-AFHD--VVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~-g-~TvI~ItH~l~~i-~~~D--~Il~l~~~ 650 (1064)
|++||+.+...+.+.+.+ . | .|+|++||++... ..+| +|+++.++
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g 210 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNG 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecC
Confidence 999999999998887643 3 4 5899999998544 4555 67777643
No 413
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=6.7e-17 Score=166.02 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=98.0
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcCCCCCC
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
...++.+.++..+.|+|||||||||+++.+....-..+|.+..... .+.+ ++++...
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~----------------- 69 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-----VKAGCIVAAVSA----------------- 69 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-----ccCCCcceeeEE-----------------
Confidence 3345555566799999999999999999987765555554432110 0000 0111000
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~ 616 (1064)
. . +-.. .+||+||+||+++||+|.. +|+++|+|||++++|+.....
T Consensus 70 ------~---~------------i~~~---------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 70 ------E---L------------IFTR---------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ------E---E------------ehhe---------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0 0000 2599999999999999986 789999999999999999888
Q ss_pred HHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 617 FCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 617 l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.+.+.+ .+.++|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 7776543 26899999999999999999999974
No 414
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.65 E-value=4.7e-13 Score=144.02 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 109 ALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYF 188 (1064)
Q Consensus 109 ~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f 188 (1064)
..+++.++...++...|.+.+.+++.+...+.+.........++ .++...+.....+...+...++..++..+++.+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFL-LIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666788999999988655443311111111111 11111112222222233344555557778888999
Q ss_pred hhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001511 189 ENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRN 267 (1064)
Q Consensus 189 ~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~ 267 (1064)
++..+.|.+++++. .++..+|+++|++.+.+.+...+...+..++.. +....++++.+|.+++++++..|+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISI-IFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchh-hhhhhcccccccccccccchhhhhhHhhhhh
Confidence 99999999998764 679999999999998888777666666555433 2334556678999999999888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 268 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 268 ~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
+.++..+..++.++..++......+..+|+++||.|+.|+.+.+++++..++..+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKY 220 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888888999999999999999999888877777666554443
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.2e-16 Score=177.95 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=129.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc---CCCCccEEEeCCCCccccccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
.|.++|.+++- .++.++.|-||.|-.|.++++|||||-|||||++-|+.- +||. = .+-++-|
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-I-------------DvLlCEQ 328 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-I-------------DVLLCEQ 328 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-C-------------ceEeeee
Confidence 47888888764 467899999999999999999999999999999998752 2332 1 2334444
Q ss_pred CCCCCcccHHHHh---------------------cCCCCCC------------CcCCCCCHHHHHHHHHhcCChhHHhcC
Q 001511 521 RPYTAVGTLRDQL---------------------IYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRY 567 (1064)
Q Consensus 521 ~p~l~~~Ti~eni---------------------~~~~~~~------------~~~~~~~~~~i~~~l~~~~L~~~~~~~ 567 (1064)
+...-..|.-+.+ ..+.... .......+.+...+|.-+|.+.-+...
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 4322211111111 1110000 000011223444455555555444433
Q ss_pred CCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEE
Q 001511 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLS 646 (1064)
Q Consensus 568 p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1064)
|- ..+|||.|.||++||||+.+|-+|.|||||++||....-++-..|..-.+|.++||||-+.+. .|..|+.
T Consensus 409 Pt-------~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 409 PT-------TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred Cc-------cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence 42 479999999999999999999999999999999999888888888877899999999999875 6888999
Q ss_pred EeCC
Q 001511 647 LDGE 650 (1064)
Q Consensus 647 l~~~ 650 (1064)
+|+.
T Consensus 482 LD~q 485 (807)
T KOG0066|consen 482 LDNQ 485 (807)
T ss_pred hhhh
Confidence 9875
No 416
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=1.5e-16 Score=171.66 Aligned_cols=144 Identities=24% Similarity=0.239 Sum_probs=106.5
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+.+|++++..+|++++|+|||||||||+++.++-. . +-.++| +||.+... .
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~-------~la~~g~~vpa~~~~----------~ 70 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------V-------LMAQIGCFVPCDSAD----------I 70 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------H-------HHHHhCCCcCcccEE----------E
Confidence 45789999999999999999999999999999998721 1 112334 55554311 0
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCC
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF--YHKPKFAILDEC---TSAVT 610 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL--~~~P~iliLDEP---TSaLD 610 (1064)
+ .+.++++.+++.+... ..+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 71 ~-------------~~~~il~~~~l~d~~~-----------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 71 P-------------IVDCILARVGASDSQL-----------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred e-------------ccceeEeeeccccchh-----------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 0 0112344445543321 36999999999999999 899999999999 99999
Q ss_pred HHHHHHH-HHHHHh-cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 611 TDMEERF-CAKVRA-MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 611 ~~~~~~l-~~~l~~-~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+...... .+.+.+ .|.++|++||..+..+.+|++..+++
T Consensus 127 ~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 127 GFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 9877653 355554 58999999998777778998887764
No 417
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=1.1e-15 Score=200.24 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=68.2
Q ss_pred CCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~---P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|||||.|||-||.-|..+ +.++||||||.||++...+.+++.++ +.|.|+|+|.|++..++.||.|+.|-.+
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~ 1777 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCC
Confidence 47999999999999999876 79999999999999999999888754 5699999999999999999999999765
Q ss_pred C
Q 001511 651 G 651 (1064)
Q Consensus 651 g 651 (1064)
|
T Consensus 1778 g 1778 (1809)
T PRK00635 1778 S 1778 (1809)
T ss_pred c
Confidence 3
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=2.6e-15 Score=179.43 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=67.4
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|||||.|||-+|.-|.++. .+.||||||.||-.+-.+++++.+.+ .|-|||+|.|++..++.||+|+-|-.+
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPe 900 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPE 900 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCC
Confidence 579999999999999999887 99999999999999888888776654 699999999999999999999999654
No 419
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=1.3e-15 Score=190.59 Aligned_cols=190 Identities=21% Similarity=0.323 Sum_probs=149.0
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC---CccEEEeCCCC-cc--ccccEEEEecCCC-CCcccHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRPY-TAVGTLR 530 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~-~~--lr~~i~~v~Q~p~-l~~~Ti~ 530 (1064)
..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|.+||.+ ++ -++.++|++|+.. .+..||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999998754 35799999986 11 2678999998764 5678999
Q ss_pred HHhcCCCCCCCc---CCCCCH-H----HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001511 531 DQLIYPLTSDQE---VEPLTH-G----GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1064)
Q Consensus 531 eni~~~~~~~~~---~~~~~~-~----~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1064)
|-+.|..+.... .++.++ + ..+.+++.+||++-.+....+ +-....|||||.||.+|-+++.+|++++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeeeeecCcceeee
Confidence 999875443211 111222 2 234678889998655544321 12346999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CcEEEEEccChh--HHHhcCEEEEEeCC
Q 001511 603 DECTSAVTTDMEERFCAKVRAM----GTSCITISHRPA--LVAFHDVVLSLDGE 650 (1064)
Q Consensus 603 DEPTSaLD~~~~~~l~~~l~~~----g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1064)
||+|.|||..+.-++.+.+++. +.|.++.=|..+ .....|.|++|.++
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 9999999999999998888763 888888888765 45668999999865
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=1.3e-15 Score=161.71 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=90.5
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC-CcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-AVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l-~~~Ti~eni~~~ 536 (1064)
+++++|++++. |++++|+||||||||||+|+|+|.... ...|.+ +. .-.+++|...+ +..|+.||+..+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~--v~-a~~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAP--VC-ASSFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCE--Ee-cCccCcccceEEEeccchhccccc
Confidence 45778887765 799999999999999999999885531 112321 00 01366674333 346889998776
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
.... ....+++.++++.+++ .+|+++|+||||+++|+.....
T Consensus 84 ~s~~----~~e~~~~~~iL~~~~~----------------------------------~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 84 ISYF----YAELRRLKEIVEKAKK----------------------------------GEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred cChH----HHHHHHHHHHHHhccC----------------------------------CCCeEEEEecccCCCCHHHHHH
Confidence 4321 0011233444433321 6999999999999999987765
Q ss_pred HH----HHHHhcCcEEEEEccChhHHHhc
Q 001511 617 FC----AKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 617 l~----~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
+. +.+.+.+.|+|++||+++.+...
T Consensus 126 l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 126 ASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 43 33445689999999999987643
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.57 E-value=2.6e-15 Score=159.68 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=90.3
Q ss_pred eceEEEeCCCEEEEEcCCCCchhHHHHHhccc-CCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCC
Q 001511 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ 541 (1064)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~ 541 (1064)
..|+++.+|++++|+||||||||||+|+|++. +.+..|... +.. +..+++..| +....
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~~~----~~~i~~~dq------------i~~~~---- 79 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-PAE----SASIPLVDR------------IFTRI---- 79 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-ccc----ccccCCcCE------------EEEEe----
Confidence 34556668999999999999999999999943 323333221 110 112222211 11000
Q ss_pred cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH---
Q 001511 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC--- 618 (1064)
Q Consensus 542 ~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~--- 618 (1064)
+..+-+. .+-..+|++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 80 -----------------~~~d~i~--------~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 80 -----------------GAEDSIS--------DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -----------------cCccccc--------CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 0000000 111357777665 66667888999999999999999998776543
Q ss_pred -HHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 619 -AKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 619 -~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.+.+.+.++|++||+.+.+..++++..++.
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~ 165 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELADLPEQVPGVKN 165 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHHHhhcCCCeEE
Confidence 3344568999999999999998887666653
No 422
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.3e-14 Score=159.22 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc---CEE
Q 001511 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH---DVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~---D~I 644 (1064)
..+|+||||+++|||+|+ .+|+++++||||++||+.....+.+.+++.+.++|+++|+......+ +++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i 261 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQI 261 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccE
Confidence 358999999999999985 79999999999999999999999999987775555555554444444 678
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+.++++
T Consensus 262 ~~l~~g 267 (270)
T cd03242 262 FRVDAG 267 (270)
T ss_pred EEEeCc
Confidence 888653
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=4.2e-14 Score=150.76 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+.+|+++++++|++++|+|||||||||++|.++++.- ..++| +||-.. ...++.|+|..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~--~~l~~~d~I~~ 77 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY--ATLPIFNRLLS 77 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh--cCccChhheeE
Confidence 4578999999999999999999999999999999988641 11222 222211 12245555543
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
.. +..+-.++ ..+.+|+|++|+ ..+-+++.+|+++|+|||++++|+....
T Consensus 78 ~~---------------------~~~d~~~~--------~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 78 RL---------------------SNDDSMER--------NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred ec---------------------CCccccch--------hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 21 11110011 114699999975 4556678999999999999999986533
Q ss_pred ----HHHHHHHhcCcEEEEEccChhHHHh
Q 001511 616 ----RFCAKVRAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 616 ----~l~~~l~~~g~TvI~ItH~l~~i~~ 640 (1064)
.+.+.+.+.|.++|++||+.+.+..
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 3445555669999999999998764
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=154.93 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=137.6
Q ss_pred EEcCCCCeeeeeceEEEeCCC-----EEEEEcCCCCchhHHHHHhcccCCCCccE-EEeCCCCccccccEEEEecCCC-C
Q 001511 452 VVTPTGNVLVENLTLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGSDLNKEIFYVPQRPY-T 524 (1064)
Q Consensus 452 ~~y~~~~~~L~~vsl~i~~Ge-----~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~-I~i~g~~~~lr~~i~~v~Q~p~-l 524 (1064)
+.||+-+..+.+..|.|+.|+ ++..+|+||.||||++++++|..+|++|. |-. -.++|=||.-. =
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--------lnVSykpqkispK 414 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--------LNVSYKPQKISPK 414 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------cceeccccccCcc
Confidence 457776778899999999885 68899999999999999999999998763 321 14788888643 3
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
+.+|+|+-+.--.++. .....-+.+.++-+.+++.+++-. .+|||||+||+|+|-+|=+.+++.+.||
T Consensus 415 ~~~tvR~ll~~kIr~a----y~~pqF~~dvmkpL~ie~i~dqev--------q~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDA----YMHPQFVNDVMKPLQIENIIDQEV--------QGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHhHhh----hcCHHHHHhhhhhhhHHHHHhHHh--------hcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 5678877553211111 122334556777777777776644 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHH----HHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 605 CTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 605 PTSaLD~~~~~~----l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
|.+-||.+.+.. +.+.+-...+|-.+|.||.-..- .+||+++.++..+
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps 535 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPS 535 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcc
Confidence 999999887754 33344456899999999988775 4999999998654
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.43 E-value=2.1e-13 Score=149.38 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=109.9
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc---CCCCCCCc
Q 001511 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQE 542 (1064)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~---~~~~~~~~ 542 (1064)
+.+.+||+++|+||+|+|||||++.+.+..+...+++. .+.++-+++..-...+.+.+. .......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~----------~~v~vI~er~~ev~el~~~I~~~~v~~~~~~- 79 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY----------LIVLLIDERPEEVTDMQRSVKGEVIASTFDE- 79 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE----------EEEEEccCCCccHHHHHHHhccEEEEecCCC-
Confidence 46889999999999999999999999998876533322 122334443221112222220 0000000
Q ss_pred CCCC---CHHHHHHHHH---hcCCh-----hHHhcCCCCcc---cCCCCCcChHH--------HHHHHHHHHHccCCCEE
Q 001511 543 VEPL---THGGMVELLK---NVDLE-----YLLDRYPPEKE---INWGDELSLGE--------QQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 543 ~~~~---~~~~i~~~l~---~~~L~-----~~~~~~p~~~~---~~~g~~LSGGq--------rQRlaIARAL~~~P~il 600 (1064)
.... ....+.+.++ ..|-. |-+.+++.... ...|..+|||| +||+++||++.++++|.
T Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 80 PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000 0001111111 11211 22344443221 13578899999 99999999999999999
Q ss_pred EEeCCCCCCCHHHHH--HHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEE--RFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~--~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+| ||+.+|..++. -+.+.++..+.|.|++||+++...++|.|.+++.+
T Consensus 160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~ 209 (249)
T cd01128 160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSG 209 (249)
T ss_pred Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCC
Confidence 99 99999965443 34566666789999999999999999999999865
No 426
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.42 E-value=3.5e-13 Score=170.11 Aligned_cols=87 Identities=28% Similarity=0.427 Sum_probs=74.8
Q ss_pred HHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcE
Q 001511 554 LLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGTS 627 (1064)
Q Consensus 554 ~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~---~~g~T 627 (1064)
.+..+||.++ .++.+ .+|||||+|||+|||||..+| +++||||||++||+.....+.+.++ +.|.|
T Consensus 470 ~L~~vgL~~l~l~r~~--------~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~T 541 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNT 541 (924)
T ss_pred hHhhccccccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4566677654 44444 489999999999999999986 8999999999999999999887765 35899
Q ss_pred EEEEccChhHHHhcCEEEEEe
Q 001511 628 CITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+|+|+||++.+..||+|++|.
T Consensus 542 VIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 542 VIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred EEEEECCHHHHhhCCEEEEec
Confidence 999999999999999999994
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.42 E-value=4e-13 Score=144.59 Aligned_cols=136 Identities=23% Similarity=0.231 Sum_probs=90.4
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+.+.+|++++.++ ++++|+|||||||||++|.+++..-. ..|.. ++. -+..++++.|- ....++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~----~~~~i~~~~~i--~~~~~~~~----- 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPA----SKAEIGVVDRI--FTRIGASD----- 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-ecc----ccceecceeeE--eccCCchh-----
Confidence 4688999999887 99999999999999999999874321 22221 111 12345555431 01112222
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH----HHHHHHH--ccCCCEEEEeCC---CC
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR----LGMARLF--YHKPKFAILDEC---TS 607 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR----laIARAL--~~~P~iliLDEP---TS 607 (1064)
++|+||.+. ..+++++ +.+|+++||||| |+
T Consensus 85 -----------------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 85 -----------------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred -----------------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 344444432 3355555 469999999999 99
Q ss_pred CCCHHHH-HHHHHHHHhc-CcEEEEEccChhHHHhcCEEEEE
Q 001511 608 AVTTDME-ERFCAKVRAM-GTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 608 aLD~~~~-~~l~~~l~~~-g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
++|.... ..+.+.+.+. +.|+|++||+.+....+|++..+
T Consensus 124 ~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v 165 (216)
T cd03284 124 TYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRV 165 (216)
T ss_pred hHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCe
Confidence 9998653 4566766666 89999999998877777765444
No 428
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.41 E-value=3.6e-13 Score=170.29 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=76.1
Q ss_pred HHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCc
Q 001511 553 ELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGT 626 (1064)
Q Consensus 553 ~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~---~~g~ 626 (1064)
+.++.+||.++ .++.+ .+|||||+|||+|||||..+| +++||||||++||+.....+.+.++ +.|.
T Consensus 471 ~~L~~vGL~~l~l~r~~--------~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~ 542 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGN 542 (943)
T ss_pred HHhhccccCCCCCCCch--------hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCC
Confidence 35677777655 45544 489999999999999999997 9999999999999999999887765 4589
Q ss_pred EEEEEccChhHHHhcCEEEEEe
Q 001511 627 SCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|+|+|+||++.+..||+|++|.
T Consensus 543 TVIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 543 TLIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred EEEEEeCCHHHHHhCCEEEEec
Confidence 9999999999999999999994
No 429
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.39 E-value=4.3e-13 Score=127.68 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=62.9
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.+ .+.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 7999999975 2345667788887 89999999
Q ss_pred HhcCCC
Q 001511 532 QLIYPL 537 (1064)
Q Consensus 532 ni~~~~ 537 (1064)
||.++.
T Consensus 74 Ni~~~~ 79 (107)
T cd00820 74 NIFLIT 79 (107)
T ss_pred hceeee
Confidence 999853
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.37 E-value=2e-12 Score=143.17 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=83.4
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1064)
..++|+||||||||||+++|+|+++|++|+|.++|.+ .++...++++||+......++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------ 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence 6889999999999999999999999999999999954 122233445555432111111111
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~ 624 (1064)
.| . ..|+ ..++|+ .+|+++|+|||++. +....+.+.+. .
T Consensus 180 ----------------------~~---------k-~~~~---~~~i~~--~~P~villDE~~~~---e~~~~l~~~~~-~ 218 (270)
T TIGR02858 180 ----------------------CP---------K-AEGM---MMLIRS--MSPDVIVVDEIGRE---EDVEALLEALH-A 218 (270)
T ss_pred ----------------------ch---------H-HHHH---HHHHHh--CCCCEEEEeCCCcH---HHHHHHHHHHh-C
Confidence 01 0 1121 233333 69999999999852 33344444443 5
Q ss_pred CcEEEEEccChhH--H------------HhcCEEEEEeCC
Q 001511 625 GTSCITISHRPAL--V------------AFHDVVLSLDGE 650 (1064)
Q Consensus 625 g~TvI~ItH~l~~--i------------~~~D~Il~l~~~ 650 (1064)
|.|+|++||+.+. + ..+|++++|+++
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 9999999997665 3 347999999864
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.35 E-value=3.2e-12 Score=137.43 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=100.1
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHh-cccC--CCCccE-------EEeCCCC-ccccccEEEEecCCCCC----c
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVL-GGLW--PLVSGH-------IAKPGVG-SDLNKEIFYVPQRPYTA----V 526 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL-~Gl~--~p~~G~-------I~i~g~~-~~lr~~i~~v~Q~p~l~----~ 526 (1064)
++..+.+.+ ..+.|+|||||||||++.+| ..|- +..+.+ |...+.. ......|...++++... .
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 455556654 59999999999999999999 2332 221111 1110100 11123355555444211 0
Q ss_pred c--cHHHHhcCCCC-CCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCC
Q 001511 527 G--TLRDQLIYPLT-SDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPK 598 (1064)
Q Consensus 527 ~--Ti~eni~~~~~-~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~ 598 (1064)
. .+...+.-... ... .......+++.+.+....+.. ..||||||-+++||-.| +.+++
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~--------------~~lSgGEk~~~~Lal~lA~~~~~~~p 160 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP--------------EFLSGGEKSLVALALLLALQRYKPSP 160 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT--------------TGS-HHHHHHHHHHHHHHHHTCS--S
T ss_pred cccccccccccccccccccccccccccccccccccccccc--------------cccccccccccccccccccccccccc
Confidence 0 11111110000 000 001134455666666555432 16999999999999665 46789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
++|||||.++||......+.+.+++. +.-+|++||+......+|+.+.+.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999875 488999999999999999988775
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.34 E-value=6.7e-12 Score=157.00 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=97.7
Q ss_pred cEEEEeeEEEcCCCCeeeee-----ceEEEeCC-CEEEEEcCCCCchhHHHHHhccc-CCCCccEEEeCCCCccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVEN-----LTLKVEPG-SNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVGSDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~-----vsl~i~~G-e~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~~~lr~~i~ 516 (1064)
.+.++++.. |++++ +|+++.+| ++++|+||||+|||||+|+++|. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 567776653 44443 78889888 89999999999999999999997 4555552
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||...... ..+.+++.... .+ .+-+... .+++|+|++|+..|++++ .+
T Consensus 354 ~Vpa~~~~~-~~~~d~i~~~i---------~~------------~~si~~~--------LStfS~~m~~~~~il~~~-~~ 402 (771)
T TIGR01069 354 PIPANEHSE-IPYFEEIFADI---------GD------------EQSIEQN--------LSTFSGHMKNISAILSKT-TE 402 (771)
T ss_pred CccCCcccc-ccchhheeeec---------Ch------------HhHHhhh--------hhHHHHHHHHHHHHHHhc-CC
Confidence 333332100 01122221100 00 0001111 137999999999999887 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHH
Q 001511 597 PKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 639 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~ 639 (1064)
|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.++..
T Consensus 403 ~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 403 NSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9999999999999998877663 334456999999999988654
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=1.1e-12 Score=137.84 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHH----HHHHh-cCcEEEEEccChhHHHhcCE
Q 001511 577 DELSLGEQQRLGMARLFYH--KPKFAILDECTSAVTTDMEERFC----AKVRA-MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~--~P~iliLDEPTSaLD~~~~~~l~----~~l~~-~g~TvI~ItH~l~~i~~~D~ 643 (1064)
+++|+|++| +++++.. +|+++|+|||++++|+.....+. +.+.+ .+.++|++||+.+..+.+|.
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 368888887 4455544 99999999999999998665543 33344 38899999999987776653
No 434
>PRK00064 recF recombination protein F; Reviewed
Probab=99.29 E-value=3e-11 Score=139.75 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHh---cCEE
Q 001511 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAF---HDVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~---~D~I 644 (1064)
..+|.||||+++||++|+ .+|++++||||+++||+..+..+.+.+.+.+..++++||+...+.. .+++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 469999999999999985 7999999999999999999999999987766789999998765532 3577
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+.++++
T Consensus 352 ~~v~~G 357 (361)
T PRK00064 352 FHVEQG 357 (361)
T ss_pred EEEeCC
Confidence 777653
No 435
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=99.28 E-value=1.1e-08 Score=113.38 Aligned_cols=279 Identities=13% Similarity=0.222 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1064)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1064)
+.++.+....+-+++.++.|.+.|+|.++.. ....|+..+..++.+.++..++..+..|+.....-+||..++
T Consensus 13 ~~il~~~~~~v~v~V~iN~W~~~Fyd~iQ~al~~~~~~t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~ 92 (315)
T PF05992_consen 13 ALILFVTWFQVQVSVAINEWYGPFYDLIQKALSKPGSVTIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMN 92 (315)
T ss_pred HHHHHHHHHHHheeeeehHhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666677778999999999988765 234566666555555555555666778889889999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhH
Q 001511 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS----------YASPKY 250 (1064)
Q Consensus 181 ~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~----------~~~~~L 250 (1064)
+...+.| +++ +.+....||+.+|+.++++.+..+...++.++...+.|.-+|+. +-+...
T Consensus 93 ~yY~~~W-~~~---------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~ 162 (315)
T PF05992_consen 93 EYYMSHW-PKL---------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPH 162 (315)
T ss_pred HHHHHHH-HHh---------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCch
Confidence 8886665 222 12334579999999999999888888888887777666433221 111122
Q ss_pred H-HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001511 251 V-FW-ILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1064)
Q Consensus 251 ~-li-~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1064)
. ++ +++...+..+++...|.++..+..+.|+.|+++|..+..-.++.+. ++ ...+.+.|.++.++..+.-
T Consensus 163 ~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~~~r-----a~---~~tl~eLF~~Vr~Ny~rly 234 (315)
T PF05992_consen 163 SLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDDANR-----AQ---PPTLRELFSNVRRNYFRLY 234 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCccccc-----CC---chhHHHHHHHHHHHHHHHH
Confidence 2 22 2333344455566678888888899999999999865443333211 11 2235577877777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1064)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~ 408 (1064)
......++........ ...++.+++.|.++.|.+ |+|... .....+...-+++.-+...+..+.++.+
T Consensus 235 ~hy~yfni~~~~y~q~-~~i~~~i~l~Psi~ag~i-----TLG~~~------Qi~~aF~~V~~sfq~lv~~W~tivEL~S 302 (315)
T PF05992_consen 235 FHYMYFNIARISYLQF-DVIFPYIILIPSIVAGAI-----TLGVLQ------QISNAFGQVRSSFQYLVNSWTTIVELRS 302 (315)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc-----cHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444455544443322 233455555555565544 777432 1223445555677777788888888888
Q ss_pred HHHHHHHH
Q 001511 409 YADRIHEL 416 (1064)
Q Consensus 409 ~~~Ri~el 416 (1064)
..+|+.++
T Consensus 303 i~kRL~~F 310 (315)
T PF05992_consen 303 IYKRLRAF 310 (315)
T ss_pred HHHHHHHH
Confidence 88888775
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=2e-11 Score=131.17 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=86.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcc--cCCCCccEEEeCCCCccccccEEEEecCCCCCc--ccHHHHhc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV--GTLRDQLI 534 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~--~Ti~eni~ 534 (1064)
.+=+|+++.=..+.+++|+||||+|||||+|.++. .. +..|...... .-.+++..|...-.. .++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----~~~~~~~d~i~~~l~~~~si~~--- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----SATIGLVDKIFTRMSSRESVSS--- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----CcEEeeeeeeeeeeCCccChhh---
Confidence 34455554322237899999999999999999984 33 5567654322 135677766431110 01100
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcC--hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001511 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS--LGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1064)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LS--GGqrQRlaIARAL~~~P~iliLDEPTSaLD~~ 612 (1064)
.+| .-+-||+++|++++.+|+++|+|||++++|+.
T Consensus 88 -------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 88 -------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred -------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 112 34679999999999999999999999999986
Q ss_pred HHHH----HHHHHHhc---CcEEEEEccChhHHHhc
Q 001511 613 MEER----FCAKVRAM---GTSCITISHRPALVAFH 641 (1064)
Q Consensus 613 ~~~~----l~~~l~~~---g~TvI~ItH~l~~i~~~ 641 (1064)
.... +.+.+.+. +.++|++||+.+.+...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4332 23333333 35899999999988654
No 437
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=4.6e-11 Score=158.74 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCC-cccCCCCCcChHHHH------HHHHHHHHccC
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE-KEINWGDELSLGEQQ------RLGMARLFYHK 596 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~-~~~~~g~~LSGGqrQ------RlaIARAL~~~ 596 (1064)
.|.||+.|||.+ .+. .+++ .++++.++...++..+|.+ +.......||||||| |++||||++.+
T Consensus 1153 ~~~~~~~~~i~~-~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~ 1223 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSD------ADEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLN 1223 (1311)
T ss_pred HcCccHHHHhhc-CCC------CChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcC
Confidence 467999999998 332 2333 5777888888888888765 334444589999999 99999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh--------cCcEEEEEccChhHHH------hcCEEEEEe
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA--------MGTSCITISHRPALVA------FHDVVLSLD 648 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~--------~g~TvI~ItH~l~~i~------~~D~Il~l~ 648 (1064)
|++++|||||++||+.+...+.+.+.. .|.|+|+|||++..+. .+|+.+.+.
T Consensus 1224 ~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1224 CGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999887765532 3789999999999875 356666554
No 438
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.16 E-value=2.7e-11 Score=136.34 Aligned_cols=165 Identities=28% Similarity=0.369 Sum_probs=114.5
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC--C-------cc------------cc--ccEEEEecCCCCC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--G-------SD------------LN--KEIFYVPQRPYTA 525 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~--~-------~~------------lr--~~i~~v~Q~p~l~ 525 (1064)
.+|+..++||.||-||||-+++++|-.+|.-|.-.-+.. + .+ ++ -+..||-|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 489999999999999999999999999998776432210 0 00 00 0111222222222
Q ss_pred cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
.+++++.+.--. ..+...++++..+|....++-. .+|||||-||.+||.+.+++.++.++|||
T Consensus 178 k~~v~~~l~~~~---------~r~~~~~~~~~~~L~~~~~re~--------~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLDRKD---------ERDNKEEVCDQLDLNNLLDREV--------EQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHh---------hcccHHHHHHHHHHhhHHHhhh--------hhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 234444432111 1123445666666666665533 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
.|-||...+..-...++ ..+.=+|+|.||++.+.+ .|-|..+-+-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGv 289 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGV 289 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecC
Confidence 99999988766544444 347889999999998875 6888888764
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=1.9e-10 Score=124.23 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+.+.+|+++.+++|++++|+||||+||||+++.+++ .+.++.|.... +.. -.+++..| |...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~-a~~----~~~~~~~~------------i~~~ 80 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP-ASS----ATLSIFDS------------VLTR 80 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE-cCc----eEEeccce------------EEEE
Confidence 568999999999999999999999999999999999 77888887543 211 12333222 2110
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH--
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME-- 614 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~-- 614 (1064)
....+ + +. -|+.. + ..|-+|++-.---+.+|+++|+|||.++.|+...
T Consensus 81 ~~~~d-----~---~~-----~~~St----------------F-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 81 MGASD-----S---IQ-----HGMST----------------F-MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ecCcc-----c---cc-----cccch----------------H-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 00000 0 00 00011 1 1233344333334568999999999666664332
Q ss_pred --HHHHHHHHhc-CcEEEEEccChhHHHhc
Q 001511 615 --ERFCAKVRAM-GTSCITISHRPALVAFH 641 (1064)
Q Consensus 615 --~~l~~~l~~~-g~TvI~ItH~l~~i~~~ 641 (1064)
..+.+.+.+. +.++|++||+.++....
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 3355555555 89999999999886543
No 440
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=4.1e-11 Score=128.44 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhc
Q 001511 583 EQQRLGMARLFYHKPKFAILDECT-----SAVTTDMEERFCAKVRAM 624 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPT-----SaLD~~~~~~l~~~l~~~ 624 (1064)
|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999988763
No 441
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.12 E-value=1.1e-10 Score=142.81 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=67.9
Q ss_pred CCcChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHhc-CcEEEEEccChhHHHhcCEE
Q 001511 577 DELSLGEQQRLGMARLFY----------HKPKFAILDECT-SAVTTDMEERFCAKVRAM-GTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~----------~~P~iliLDEPT-SaLD~~~~~~l~~~l~~~-g~TvI~ItH~l~~i~~~D~I 644 (1064)
..||||||||++|||||+ .+|+++|||||| ++||+.....+.+.+++. |.|+|+|||+......+|++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 479999999999999987 599999999998 789999999999888774 78999999999888889999
Q ss_pred EEEeCCC
Q 001511 645 LSLDGEG 651 (1064)
Q Consensus 645 l~l~~~g 651 (1064)
+++++.|
T Consensus 547 ~~l~~~~ 553 (562)
T PHA02562 547 LKMEKVG 553 (562)
T ss_pred EEEEEEC
Confidence 9998744
No 442
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.09 E-value=2.3e-10 Score=139.85 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=67.1
Q ss_pred CcChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHK----PKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~----P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.|||||+||++|||+++.. |+++|+||||++||+.+...+.+.+++ .+.|||+|||++..+..+|++++++++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 6999999999999999985 699999999999999999998888765 389999999999999999999999864
No 443
>PRK10869 recombination and repair protein; Provisional
Probab=99.04 E-value=4.5e-10 Score=136.52 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=67.1
Q ss_pred CcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.|||||+||++||++++. +|+++|+|||+++||..+...+.+.+++. +.|+|+|||++..+..||+++.++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 599999999999999996 68999999999999999999998888753 68999999999999999999999864
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.03 E-value=1.5e-09 Score=136.50 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHh
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~ 640 (1064)
+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.+....
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 47999999999999998 899999999999999998766653 3344568999999999887754
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.98 E-value=3.9e-09 Score=114.85 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=88.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHH-HHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTL-l~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+.+++++..+.+ .+++|+.++|+||+||||||| ++.+.++.++... +.|+..+..
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------~~yi~~e~~ 63 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------VSYVSTQLT 63 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------EEEEeCCCC
Confidence 455666654433 279999999999999999999 6899987764322 334432210
Q ss_pred CCcccHHHHhc-CCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCC
Q 001511 524 TAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPK 598 (1064)
Q Consensus 524 l~~~Ti~eni~-~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~ 598 (1064)
...+.++.. ++. + +.+.... +.-.+.+-.| .+|+++.++-.+++.+-. +|+
T Consensus 64 --~~~~~~~~~~~g~---------~---~~~~~~~-~~l~~~~~~~---------~~~~~~~~~~~l~~il~~~~~~~~~ 119 (230)
T PRK08533 64 --TTEFIKQMMSLGY---------D---INKKLIS-GKLLYIPVYP---------LLSGNSEKRKFLKKLMNTRRFYEKD 119 (230)
T ss_pred --HHHHHHHHHHhCC---------c---hHHHhhc-CcEEEEEecc---------cccChHHHHHHHHHHHHHHHhcCCC
Confidence 011111110 110 0 0011100 0000111112 467777766666665543 699
Q ss_pred EEEEeCCCCCC----CHHHHHHHHHHHH---hcCcEEEEEccChhHH--------H-hcCEEEEEe
Q 001511 599 FAILDECTSAV----TTDMEERFCAKVR---AMGTSCITISHRPALV--------A-FHDVVLSLD 648 (1064)
Q Consensus 599 iliLDEPTSaL----D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i--------~-~~D~Il~l~ 648 (1064)
++++||||+++ |+...+.+.+.++ +.|.|+++ ||+.... . .+|-|+.|+
T Consensus 120 ~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 120 VIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 99999999999 7666666666654 45776655 5554332 1 257777775
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.97 E-value=2.9e-10 Score=118.10 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDE--CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDE--PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+||+++-+..+++..+.+|+++++|| |+..+|....+.+.+.+ +.+.++|+++|+......+|+|..+.++
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 3699999999999999999999999999 66677777777777777 6789999999997666788998888764
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=98.91 E-value=2.9e-09 Score=137.34 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=66.0
Q ss_pred CCCcChHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hc-C-cEEEEEccChhHHHhcCE
Q 001511 576 GDELSLGEQQRLGM------ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AM-G-TSCITISHRPALVAFHDV 643 (1064)
Q Consensus 576 g~~LSGGqrQRlaI------ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~-g-~TvI~ItH~l~~i~~~D~ 643 (1064)
...||||||||++| ||+++.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+...+..||+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ 878 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADV 878 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCe
Confidence 46899999999975 599999999999999999999999988877654 22 3 489999999999999999
Q ss_pred EEEEeCCC
Q 001511 644 VLSLDGEG 651 (1064)
Q Consensus 644 Il~l~~~g 651 (1064)
|+.+...|
T Consensus 879 ii~~~~~~ 886 (895)
T PRK01156 879 AYEVKKSS 886 (895)
T ss_pred EEEEEecC
Confidence 99998543
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=3e-09 Score=138.94 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCCcChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hc
Q 001511 576 GDELSLGEQQRLGMARLFYH----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FH 641 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~----------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~ 641 (1064)
...|||||++|++||+||+. +|+++|+||||++||+.+...+.+.+++ .|++|++|||+++... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 35899999999999999985 7999999999999999999988877654 5899999999999875 68
Q ss_pred CEEEEEeCCCc
Q 001511 642 DVVLSLDGEGE 652 (1064)
Q Consensus 642 D~Il~l~~~g~ 652 (1064)
|+|.|+..+||
T Consensus 1028 ~~i~v~~~~~g 1038 (1042)
T TIGR00618 1028 HRILVKKTNAG 1038 (1042)
T ss_pred CEEEEEECCCC
Confidence 99999976543
No 449
>PRK03918 chromosome segregation protein; Provisional
Probab=98.88 E-value=4.2e-09 Score=135.62 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001511 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
..|||||+| |+||||+++.+|+++|+||||++||+.....+.+.+.. .+.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 56666788999999999999999999999998887654 367999999999988899999999
Q ss_pred eCC
Q 001511 648 DGE 650 (1064)
Q Consensus 648 ~~~ 650 (1064)
+.+
T Consensus 867 ~~~ 869 (880)
T PRK03918 867 SLE 869 (880)
T ss_pred Eec
Confidence 843
No 450
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=7.8e-09 Score=121.77 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=97.9
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------ccccccEEEEecC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------SDLNKEIFYVPQR 521 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~~lr~~i~~v~Q~ 521 (1064)
.+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.+ ..+++.+.++.+.
T Consensus 144 tg~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 144 VGVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred cchhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 356789999 9999999999999999999999999999999999999986643 1245667777653
Q ss_pred --CCCCc-------ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccC-CCCCcChHHHHHHHHHH
Q 001511 522 --PYTAV-------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN-WGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 522 --p~l~~-------~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~-~g~~LSGGqrQRlaIAR 591 (1064)
|.... .|+.|.+. ++ .. ++- .-++|+ |.|-|-
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr------------------------------~~-g~--~Vll~~Dslt-----r~A~A~ 264 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFR------------------------------DQ-GL--NVMLMMDSVT-----RVAMAQ 264 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------------------------------HC-CC--cEEEEEeChH-----HHHHHH
Confidence 21100 12222222 11 00 000 001121 111111
Q ss_pred ----HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCc-----EEEEEccChhHHHhcCEEEEEeCC
Q 001511 592 ----LFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGT-----SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 592 ----AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-----~g~-----TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+.+|+ .|+|+|+.....+.+.+++ .|. ||++.+||++. ..+|++..+.++
T Consensus 265 rEisl~~ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG 330 (438)
T PRK07721 265 REIGLAVGEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDG 330 (438)
T ss_pred HHHHHhcCCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCE
Confidence 0122333 3789999999887777654 354 99999999985 778999988753
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.82 E-value=1e-08 Score=106.89 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHHH---HHhcCcEEEEEccChhH-------
Q 001511 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVT---TDMEERFCAK---VRAMGTSCITISHRPAL------- 637 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEPTSaLD---~~~~~~l~~~---l~~~g~TvI~ItH~l~~------- 637 (1064)
..+|+||+| ....+.+...+|+++++||||+.+| ......+.+. +++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 378999999 4455555668999999999999999 6555555443 45569999999998764
Q ss_pred --H-HhcCEEEEEeC
Q 001511 638 --V-AFHDVVLSLDG 649 (1064)
Q Consensus 638 --i-~~~D~Il~l~~ 649 (1064)
+ ..+|.|+.|+.
T Consensus 150 ~~~~~~aD~ii~l~~ 164 (187)
T cd01124 150 GDVEYLVDGVIRLRL 164 (187)
T ss_pred CceeEeeeEEEEEEE
Confidence 2 35899998874
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=4.1e-08 Score=105.93 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+-+|++|+.++|++++|+||||+||||+++.++...-. ..|.- ++.. ..+++++.+ .+......|++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~----~~~i~~~~~--i~~~~~~~d~~~~ 88 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAK----SMRLSLVDR--IFTRIGARDDIMK 88 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCcc----ccEeccccE--EEEecCccccccc
Confidence 35788999999999999999999999999999999875321 11210 1100 001111100 0000000111111
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
+ . +.+. .|-++++-.-....+|+++|+|||.+|.|+....
T Consensus 89 ~-----------------------~----------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~ 128 (218)
T cd03286 89 G-----------------------E----------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGY 128 (218)
T ss_pred C-----------------------c----------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHH
Confidence 0 0 0111 2334443333345789999999999999987655
Q ss_pred HHH----HHHHhc-CcEEEEEccChhHHHh
Q 001511 616 RFC----AKVRAM-GTSCITISHRPALVAF 640 (1064)
Q Consensus 616 ~l~----~~l~~~-g~TvI~ItH~l~~i~~ 640 (1064)
.+. +.+.+. +.++|++||+.+....
T Consensus 129 ~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 129 AIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 443 344444 8999999999998764
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=2.5e-08 Score=116.71 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=108.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
.++-++++..+..+..+++++ |.+.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|. +.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe-------------rg- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE-------------RG- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC-------------Cc-
Confidence 456677777676677888885 999999999999999999999999999999999887765553 21
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-------cC
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-------HK 596 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-------~~ 596 (1064)
.++.|.+.. .+..-++..- ..+..-.+-|.|+|+|++.+.+.+ .+
T Consensus 195 ---~ev~e~~~~------------------~l~~~gl~~t-------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 195 ---REVKDFIRK------------------ELGEEGMRKS-------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred ---ccHHHHHHH------------------Hhhhccccee-------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 234443321 1111111100 000011367999999999999887 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCE
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~ 643 (1064)
+-++++||||...|+. +++-..+.+ .|.+..+.||-..+.+.+-.
T Consensus 247 ~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 247 NVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred cEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 9999999999999986 334334433 37788888885555555543
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.74 E-value=3e-09 Score=124.11 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=44.3
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCcc-EEEeCCCC
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVG 508 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~ 508 (1064)
.+|++||+++++||+++|+||||||||||++ +|+.+|++| +|.++|.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 6899999999999999999999999999999 788888888 79999964
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.73 E-value=1.6e-08 Score=133.70 Aligned_cols=73 Identities=27% Similarity=0.381 Sum_probs=64.9
Q ss_pred CCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001511 576 GDELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL----~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
...||||||||++||+++ +.+|+++||||||++||+.....+.+.+... +.++|+|||++..+..||+++.+.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 458999999999999998 4677999999999999999999998887653 678999999999998999998664
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.70 E-value=4.2e-08 Score=111.42 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-ccc--ccEEEEecCCCCCcccHHHHhcCCCCCC
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLN--KEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~lr--~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.++...+ .++ ..+.++.+.. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~----------------~- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKG----------------G- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCC----------------C-
Confidence 5678889999999999999999999999999999888777654211 000 1111111100 0
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK 620 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~ 620 (1064)
+. ....+ ..-.++.+|-.+|+++++|||.+ .+.. .+++.
T Consensus 200 ---------------------------~~------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~---~e~~-~~l~a 238 (308)
T TIGR02788 200 ---------------------------QG------LAKVT----PKDLLQSCLRMRPDRIILGELRG---DEAF-DFIRA 238 (308)
T ss_pred ---------------------------CC------cCccC----HHHHHHHHhcCCCCeEEEeccCC---HHHH-HHHHH
Confidence 00 00111 12246677889999999999996 3322 23444
Q ss_pred HHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 621 VRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 621 l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+...+.+++.++|..+.....||+..+.
T Consensus 239 ~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~ 266 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPEEAFEQLALMV 266 (308)
T ss_pred HhcCCCeEEEEEeCCCHHHHHHHHHHHh
Confidence 4433346799999998777777776664
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.67 E-value=4e-08 Score=128.09 Aligned_cols=74 Identities=19% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCCcChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhc-CE
Q 001511 576 GDELSLGEQQRLGMARLFYH--------KPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFH-DV 643 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~--------~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~-D~ 643 (1064)
..+|||||+|+++||+||.. +|+++|+||||++||+.+...+++.+. +.|+||++|||...+.... .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 35899999999999999995 899999999999999999999887765 3599999999987777654 44
Q ss_pred EEEEeC
Q 001511 644 VLSLDG 649 (1064)
Q Consensus 644 Il~l~~ 649 (1064)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 545443
No 458
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=98.64 E-value=0.00016 Score=78.99 Aligned_cols=297 Identities=14% Similarity=0.171 Sum_probs=159.7
Q ss_pred HHHHHhhchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------hhHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARD-LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-------VPLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~-ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-------~~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
.+....|+++....-. -+..+...-....++++++.+.+.|+|-+++.- ...|...+.++..+.++...++.
T Consensus 73 fw~~~sph~wq~wsilgtali~f~tyF~vqvsvain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~v 152 (405)
T COG1133 73 FWFIYSPHRWQYWSILGTALIIFVTYFLVQVSVAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISV 152 (405)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456555433211 112233344445577788999999998776422 12345555666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
+-.|+.+.-.-|||..++....+.|= ++ +++....||+.+|..++++.+-++-.+++.++.+.+.|.=++
T Consensus 153 ln~ffvShyiFrWRtAMn~~ym~~W~-kl---------rhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL 222 (405)
T COG1133 153 LNNFFVSHYIFRWRTAMNEYYMANWQ-KL---------RHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVL 222 (405)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHhhh-hh---------ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77888888899999999876655542 21 223345699999999999988888888887777666553222
Q ss_pred H---HH--------hhhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001511 243 C---SY--------ASPKYVFWILAYV-LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310 (1064)
Q Consensus 243 ~---~~--------~~~~L~li~l~~~-~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~ 310 (1064)
. .. ..|...+++.+.. ....++....|-++-.+..+.|+.|+.+|..+..-.++.+- + +.
T Consensus 223 ~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgEDh~dr--A---~p--- 294 (405)
T COG1133 223 FTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHADR--A---TP--- 294 (405)
T ss_pred HHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCCchhh--c---CC---
Confidence 2 11 1233333332222 22223333445555566677888888888755444444321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHH
Q 001511 311 SHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLF 390 (1064)
Q Consensus 311 ~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~ 390 (1064)
....+.|+++..+..+.-.....+++..-+....- .++..++..+..++| ..|+|....++ ..+.+.-
T Consensus 295 ~T~~ELf~nvr~NYfRLyfHY~YFNiari~ylQ~d-nif~llil~PsivAg-----kitlG~~~QI~------n~FgqVr 362 (405)
T COG1133 295 PTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVD-NIFGLLILFPSIVAG-----KITLGLMTQIT------NVFGQVR 362 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhc-----hhhHHHHHHHH------HHHHHhh
Confidence 11234555555554443211222222221211111 122223333333334 34676433222 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 391 QSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 391 ~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
.++.-+.+++..+.++..--+|+.++.
T Consensus 363 ~SfqylinsWTTIveL~SIyKRLraFE 389 (405)
T COG1133 363 GSFQYLINSWTTIVELLSIYKRLRAFE 389 (405)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777776653
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.64 E-value=1e-07 Score=101.44 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=46.5
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+++++|..+|+++++|||. |.++...+.+.. ..|.+++.++|..+.....||++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5889999999999999996 777666655544 46899999999999888888887664
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.63 E-value=5.6e-08 Score=128.60 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred CCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 576 GDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
...||||||++++||++|+. +||++|||||+++||+.....+.+.+.+. +.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 45799999999999999974 78999999999999999999999888763 6789999999999999999988754
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.61 E-value=2e-07 Score=93.85 Aligned_cols=127 Identities=23% Similarity=0.203 Sum_probs=76.4
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+++|.||||+||||+++.+++...+..|.+ .|+.++.... ...++...... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v-------------~~~~~e~~~~--~~~~~~~~~~~-------------~ 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV-------------VYVDIEEEIE--ELTERLIGESL-------------K 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE-------------EEEECCcchH--HHHHHHhhhhh-------------c
Confidence 378999999999999999999887655544 4444443211 11111100000 0
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC----------HHHHHHHHHH--
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT----------TDMEERFCAK-- 620 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD----------~~~~~~l~~~-- 620 (1064)
...+. ..+... +....+.++.++++.+++...+|+++++||+++-++ ....+.+.++
T Consensus 53 ~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 53 GALDN---LIIVFA--------TADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ccccc---EEEEEc--------CCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000 000111 112345667778899999999999999999996544 3434444443
Q ss_pred -HHhcCcEEEEEccChhHH
Q 001511 621 -VRAMGTSCITISHRPALV 638 (1064)
Q Consensus 621 -l~~~g~TvI~ItH~l~~i 638 (1064)
.++.+.|+|+++|.....
T Consensus 122 ~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhcCCceEEEEEecCCcc
Confidence 344699999999976543
No 462
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=4.8e-07 Score=93.18 Aligned_cols=73 Identities=25% Similarity=0.329 Sum_probs=58.2
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1064)
..|-||-=---+.+.+ ++.-|.|||||-++|.+.-+-.++..+++ .|.-+|+.||.+-++.. .-.|+.++.+|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCC
Confidence 5788887666666665 45689999999999999999888776654 58999999999887764 46788887765
No 463
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.6e-07 Score=113.89 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=64.6
Q ss_pred CCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 576 GDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~--P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+|||||.||+-||.-+-.+ -=+.+||||+.||-+.--+++.+.| ++.|-|+|+|.||.++++.||+|+-+-.+
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 358999999999999999765 4588999999999887776666554 56799999999999999999999999654
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=6.6e-08 Score=114.76 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=84.3
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCC
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
+++.++.+++|++++++||||+||||++..|++.+.+..|.. +|++|++|++ ..+..||+.+.....
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------kV~LI~~Dt~--RigA~EQLr~~Aeil 312 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------KVALLTTDSY--RIGGHEQLRIYGKIL 312 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------eEEEEeCCcc--chhHHHHHHHHHHHh
Confidence 344555667899999999999999999999999887666632 5889999984 456778886422111
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH-HHHHHHHHccCC-----CEEEEeCCCCCCCHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ-RLGMARLFYHKP-----KFAILDECTSAVTTDME 614 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ-RlaIARAL~~~P-----~iliLDEPTSaLD~~~~ 614 (1064)
+.......+.........++.+....+. ++...+|+- .+.-+.+++.++ .+|+||.++..-| -
T Consensus 313 GVpv~~~~~~~Dl~~aL~~L~d~d~VLI--------DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---l 381 (484)
T PRK06995 313 GVPVHAVKDAADLRLALSELRNKHIVLI--------DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---L 381 (484)
T ss_pred CCCeeccCCchhHHHHHHhccCCCeEEe--------CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---H
Confidence 1110011111122223334433211111 121111211 223333444444 6899999988733 2
Q ss_pred HHHHHHHHhcCcEEEEEcc
Q 001511 615 ERFCAKVRAMGTSCITISH 633 (1064)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH 633 (1064)
.++.+..+..+.+-+++|+
T Consensus 382 ~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 382 NEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred HHHHHHhccCCCCEEEEeC
Confidence 3333444455777777787
No 465
>PRK02224 chromosome segregation protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=122.08 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCcChHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHh---cCc-EEEEEccChhHHHh
Q 001511 577 DELSLGEQQ------RLGMARLFYHK-----P-KFAILDECTSAVTTDMEERFCAKVRA---MGT-SCITISHRPALVAF 640 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~-----P-~iliLDEPTSaLD~~~~~~l~~~l~~---~g~-TvI~ItH~l~~i~~ 640 (1064)
..||||||| |+++|+++..+ | +++|+||||++||+.....+.+.+.. .|. ++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 479999999 99999999864 3 67999999999999999988877654 344 89999999999999
Q ss_pred cCEEEEEeCC
Q 001511 641 HDVVLSLDGE 650 (1064)
Q Consensus 641 ~D~Il~l~~~ 650 (1064)
||+++.+..+
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 466
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.52 E-value=2.5e-07 Score=117.73 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=47.6
Q ss_pred HccCCCEEEEeCCCCCC-CHHHHHHHHHHHH---hcCcEEEEEccChhHH----------HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAV-TTDMEERFCAKVR---AMGTSCITISHRPALV----------AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaL-D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i----------~~~D~Il~l~~~ 650 (1064)
+..+|+++++|||+.+| |+...+.+.+.++ +.|.++|++||+++.+ ..||..++|.++
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~ 720 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNG 720 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCc
Confidence 35799999999999999 6888877776654 4689999999999876 368888888653
No 467
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=2.6e-07 Score=108.47 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C----------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G---------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~---------- 508 (1064)
.+.++.++++..|..+..+++.++ ++.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|. +
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 356899999999988888999996 99999999999999999999999999999999999988653 2
Q ss_pred ccccccEEEEecCCC
Q 001511 509 SDLNKEIFYVPQRPY 523 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~ 523 (1064)
...++.|++|+|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 112467999999754
No 468
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.48 E-value=2.2e-06 Score=93.44 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=86.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc-CCCCCCCcCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI-YPLTSDQEVE 544 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~-~~~~~~~~~~ 544 (1064)
-+++|..+.|.|++|||||||...++- ... . | ..+.|+..+-. ...+.++.. ++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-------g------~~~~y~~~e~~--~~~~~~~~~~~g~~------ 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-------G------KKVYVITTENT--SKSYLKQMESVKID------ 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-------C------CEEEEEEcCCC--HHHHHHHHHHCCCC------
Confidence 488999999999999999999988752 111 1 1 23556554321 111222221 1110
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCC---CHHHHHHHHH
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDECTSAV---TTDMEERFCA 619 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEPTSaL---D~~~~~~l~~ 619 (1064)
+.+... .+.-.+.+..|. .....|.++++.+...+.++. +|+++++||||+.+ |......+.+
T Consensus 79 ------~~~~~~-~g~l~i~~~~~~-----~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 79 ------ISDFFL-WGYLRIFPLNTE-----GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred ------hhHHHh-CCCceEEecccc-----ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 000000 000011111111 112357789999999999987 99999999999654 4444444433
Q ss_pred HH---HhcCcEEEEEccChhH-------H-HhcCEEEEEeC
Q 001511 620 KV---RAMGTSCITISHRPAL-------V-AFHDVVLSLDG 649 (1064)
Q Consensus 620 ~l---~~~g~TvI~ItH~l~~-------i-~~~D~Il~l~~ 649 (1064)
.+ ++.|.|+++++|.... + ..+|-++.|+.
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 33 4458999999997643 2 24677877764
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.46 E-value=1.5e-07 Score=99.65 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=66.2
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+++|+||||||||||.+.|.+++ ..| .+.++++|.+....+..+...............+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNP-------------KVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLI 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCC-------------CeEEEEecccccccccccHHHhccCCCCCCCcccHHHHH
Confidence 48999999999999999999987 222 245566665443222222111111111111112334444
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~ 611 (1064)
+.++.+...+..+. | .-+.|.|++++..+ .+.+|+++|+|+|+...++
T Consensus 66 ~~l~~l~~~~~~~~-p-------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 66 SHLQDLKNGKSVEI-P-------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHCCCCEec-c-------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 55555443322221 2 13577888776555 5788999999999999876
No 470
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.44 E-value=3.3e-07 Score=105.72 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeee-----------eceEEEeCCCEEE
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE-----------NLTLKVEPGSNLL 475 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~-----------~vsl~i~~Ge~va 475 (1064)
....+|++++++.++.... .. ....+.+.|+||++.||+++.+|+ |+++.|.+|++++
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~---~~--------e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGD---DP--------EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred cccHhHHHHHhCCCccCCC---Cc--------cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEE
Confidence 4567899999886543211 00 012357999999999998888897 9999999999999
Q ss_pred EEcCCCCchhHHHHHhcccCCC
Q 001511 476 ITGPNGSGKSSLFRVLGGLWPL 497 (1064)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p 497 (1064)
|+||+|||||||++.|++.+..
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcc
Confidence 9999999999999999998764
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.42 E-value=3.4e-07 Score=96.37 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=58.1
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---cccccEEEEecCCCC---CcccHHHHh
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQRPYT---AVGTLRDQL 533 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~lr~~i~~v~Q~p~l---~~~Ti~eni 533 (1064)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+++..+ ..+..+++++|.+.. ...+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 44556678999999999999999999999999999999999999977531 123457777765532 234667766
Q ss_pred cCC
Q 001511 534 IYP 536 (1064)
Q Consensus 534 ~~~ 536 (1064)
...
T Consensus 94 ~~~ 96 (186)
T cd01130 94 RSA 96 (186)
T ss_pred HHH
Confidence 543
No 472
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.34 E-value=6.7e-07 Score=97.83 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=33.3
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHH----HhcCcEEEEEccChh
Q 001511 592 LFYHKPKFAILDECTSA------VTTDMEERFCAKV----RAMGTSCITISHRPA 636 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSa------LD~~~~~~l~~~l----~~~g~TvI~ItH~l~ 636 (1064)
+...+|+++|+| |+++ +|+.....+.+.+ ++.|.|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 446899999999 7764 6887777666554 345999999999753
No 473
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=6.4e-07 Score=103.99 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=57.7
Q ss_pred CCcChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH
Q 001511 577 DELSLGEQQRLGMARLFYH---------KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~---------~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~ 639 (1064)
..+|.|||++++||.+|+. +|+|+|||||+|+||+..++.+.+.+.+.|.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 3699999999999999999 99999999999999999999999999766789999999887543
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.30 E-value=9.3e-06 Score=78.44 Aligned_cols=115 Identities=26% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcccCCCCc-cEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCH
Q 001511 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVS-GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1064)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1064)
+|..+.|+||+||||||+++.+++...... +-+.++... .... ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~--------------~~~~--------------------~~ 46 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED--------------ILEE--------------------VL 46 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE--------------cccc--------------------CH
Confidence 468899999999999999999999887554 333333210 0000 00
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------
Q 001511 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA--------- 619 (1064)
Q Consensus 549 ~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~--------- 619 (1064)
.... ...... ......+++.++..+++|-..+|+++++||+....+.........
T Consensus 47 ~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 47 DQLL--------LIIVGG--------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred HHHH--------hhhhhc--------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0000 000000 112578899999999999998999999999999999887765542
Q ss_pred HHHhcCcEEEEEccC
Q 001511 620 KVRAMGTSCITISHR 634 (1064)
Q Consensus 620 ~l~~~g~TvI~ItH~ 634 (1064)
.....+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 222347788888884
No 475
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.29 E-value=1.2e-05 Score=102.97 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=84.7
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-CCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
..+=+|+++. +.+.++.|+|||++||||++|.++-.. -..-|. |||=+.. .-++.|.|
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---------------~VPa~~a--~i~~~d~I--- 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---------------FVPAESA--RIGIVDRI--- 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---------------ceeccce--EecccCee---
Confidence 3566778887 677899999999999999999875321 111111 2221110 00111111
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDEC---TSAVTT 611 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEP---TSaLD~ 611 (1064)
+.++|..+-+. ..+|--+.....++++|-. ++.++|+||| |+.+|.
T Consensus 654 ------------------~triga~d~i~-----------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg 704 (854)
T PRK05399 654 ------------------FTRIGASDDLA-----------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG 704 (854)
T ss_pred ------------------eeccCcccccc-----------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh
Confidence 11112111111 2467777777777777765 8999999999 999996
Q ss_pred HHHH-HHHHHHHhc-CcEEEEEccChhHHHhcC
Q 001511 612 DMEE-RFCAKVRAM-GTSCITISHRPALVAFHD 642 (1064)
Q Consensus 612 ~~~~-~l~~~l~~~-g~TvI~ItH~l~~i~~~D 642 (1064)
.... .+.+.+.+. +.++|++||..+....++
T Consensus 705 ~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 705 LSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 6543 366666665 689999999977665544
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.23 E-value=3.5e-06 Score=97.25 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=77.5
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCC
Q 001511 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1064)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1064)
..++..+.|.||+||||||+++.+.+.+++ .+|.|..-+ +|. |.. ++.... . .
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--------------dp~-------E~~-~~~~~~-~---i 172 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--------------DPI-------EYV-HRNKRS-L---I 172 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--------------CCh-------hhh-ccCccc-e---E
Confidence 457899999999999999999999997763 456654322 110 000 000000 0 0
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q 001511 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626 (1064)
Q Consensus 547 ~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~ 626 (1064)
. -..+|.. ..+ ---+++++|-.+|+++++||+. |.++....++.. ..|.
T Consensus 173 ~-------q~evg~~----------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh 221 (343)
T TIGR01420 173 N-------QREVGLD----------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGH 221 (343)
T ss_pred E-------ccccCCC----------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCC
Confidence 0 0000000 001 1234778899999999999997 888877666653 4589
Q ss_pred EEEEEccChhHHHhcCEEEEE
Q 001511 627 SCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+++.+.|..+.....+|++.+
T Consensus 222 ~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 222 LVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred cEEEEEcCCCHHHHHHHHHHh
Confidence 999999988877666665544
No 477
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.21 E-value=7.5e-05 Score=94.41 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=154.0
Q ss_pred eeehhHHHHHHhhHHHHHHhhcCCceehhHhh-cCHHHHHHHHHHHHHHhhhHHHHhhH----HHHHHHHHHHHHHHHHH
Q 001511 760 QLLAVAFLVVSRTWISDRIASLNGTTVKYVLE-QDKASFVRLIGVSVLQSAASSFIAPS----IRHLTARLALGWRIRMT 834 (1064)
Q Consensus 760 ~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~-~~~~~F~~~l~~~~~~~~pas~~n~~----l~~~~~~l~l~~R~rLt 834 (1064)
.+....++.+.-+.+.+.+..+-|.++..++. ++...|...+...+++++..++++.. ..+...++..++|.++.
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888874 46667766555444444434444332 23455566666777766
Q ss_pred HHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHH
Q 001511 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 914 (1064)
Q Consensus 835 ~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~ 914 (1064)
+++.+. +..||+ +.+..+.-+|+|+|++...+.+++-...++..++-++.+..-+.. +.+.-..++.....+
T Consensus 242 ~~ll~~---~~~~f~----~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 242 RSLLRQ---DLGFFD----ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHcC---CHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 666653 334443 233456778999999999988877666666555555444443333 222323333444445
Q ss_pred HHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001511 915 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDD 993 (1064)
Q Consensus 915 ~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~ 993 (1064)
...+.+.+.+...++..+.++.++++...-...+.+.++|--|++++.|....++..+++.+...+..+....+..+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTS 392 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777778889999999999999999999999999999999999999999998888887776665555554444444
No 478
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.20 E-value=0.00018 Score=80.34 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHH
Q 001511 793 DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLT 872 (1064)
Q Consensus 793 ~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~ 872 (1064)
+...|-..+..++.+|.|.-++.....|..+..-.+||+-+|+|..+.+=+ ++ .|+.+.|||-+|.-|||
T Consensus 51 t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~---------~r-~IEGASQRIQEDtmrfa 120 (315)
T PF05992_consen 51 TIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPK---------LR-HIEGASQRIQEDTMRFA 120 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------hc-cCccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999998876522 22 38999999999999999
Q ss_pred hHHHhhhhccchhhHHHHHHHHHHHHh---hCC-------ch--hHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccch
Q 001511 873 TDLSGLVTGMVKPSVDILWFTWRMKAL---TGQ-------RG--VAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF 940 (1064)
Q Consensus 873 ~~~a~lys~~~KP~lDi~~~~~~l~~~---~g~-------~g--~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~ 940 (1064)
+-+-+|--++++-++-.+-|.--|... +.. .+ ....+.+.++++.++=.++-+.=.|--.-|+.|..|
T Consensus 121 ~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAy 200 (315)
T PF05992_consen 121 KIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAY 200 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 999999999999999999887655544 331 11 123456666666777788888888999999999999
Q ss_pred hhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCcc
Q 001511 941 RFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA 1020 (1064)
Q Consensus 941 R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~ 1020 (1064)
|-- |+ -+|+= .+..+-.++.+.|.++-+.=.+.+..-.++.+.-.+. -++..+++|.++.+..+. +.-
T Consensus 201 RKe---LV-~gED~----~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y-~q~~~i~~~i~l~Psi~a---g~i 268 (315)
T PF05992_consen 201 RKE---LV-YGEDD----ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISY-LQFDVIFPYIILIPSIVA---GAI 268 (315)
T ss_pred HHH---HH-hcCcc----cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh---ccc
Confidence 983 22 23322 1222334555555554444444444444444444433 445556799998888886 223
Q ss_pred ccchhHHHHHHHhHH
Q 001511 1021 LVSTQGEIRMIMNLI 1035 (1064)
Q Consensus 1021 ~~~~~~~~~~~~~~~ 1035 (1064)
.++.=-++...+...
T Consensus 269 TLG~~~Qi~~aF~~V 283 (315)
T PF05992_consen 269 TLGVLQQISNAFGQV 283 (315)
T ss_pred cHHHHHHHHHHHHHH
Confidence 333323444444443
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.15 E-value=2e-06 Score=91.45 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=26.6
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1064)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999885
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.13 E-value=1.8e-07 Score=112.52 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=89.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHh--cccCCCCccEEEeCCCC--ccc---cccEEEEecCCCCCcccHHHHhcCCCCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVL--GGLWPLVSGHIAKPGVG--SDL---NKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL--~Gl~~p~~G~I~i~g~~--~~l---r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1064)
-+++|..+.|.||+|||||||..-. .|...+.+..+.+.... +++ .+.+|+-.|+..- . +++.+...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~-~----g~l~~~~~- 90 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD-E----GKLFILDA- 90 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh-c----CceEEEec-
Confidence 4789999999999999999999865 45554444555443321 111 1233333332210 0 01111000
Q ss_pred CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001511 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA--RLFYHKPKFAILDECTSAVTTDMEERF 617 (1064)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA--RAL~~~P~iliLDEPTSaLD~~~~~~l 617 (1064)
.........++.+++.++.++.+ ..+|+||+|||.|+ .+|..+|+.. ...++.+
T Consensus 91 ------~~~~~~~~~~~~~~l~~~l~~i~--------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 91 ------SPDPEGQDVVGGFDLSALIERIN--------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred ------CchhccccccccCCHHHHHHHHH--------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 00001112345556666666655 37999999999999 6666665543 3444444
Q ss_pred HH---HHHhcCcEEEEEccChhH--------H-H-hcCEEEEEeC
Q 001511 618 CA---KVRAMGTSCITISHRPAL--------V-A-FHDVVLSLDG 649 (1064)
Q Consensus 618 ~~---~l~~~g~TvI~ItH~l~~--------i-~-~~D~Il~l~~ 649 (1064)
.+ .+++.|+|+|+++|+.+. + . .+|.|+.|+.
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 191 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEE
Confidence 44 445679999999998753 1 2 4789998873
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.13 E-value=2.9e-06 Score=113.15 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCcChHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChh
Q 001511 576 GDELSLGEQQRLG----MARL--------FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPA 636 (1064)
Q Consensus 576 g~~LSGGqrQRla----IARA--------L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~ 636 (1064)
...||||||||++ +|++ +..+|++++|||||++||+.+...+++++.+.|.++|++||++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchh
Confidence 4689999999996 6765 55799999999999999999999999999999999999999863
No 482
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.11 E-value=2.7e-06 Score=100.20 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCC---------ccc---cccEEEE-----
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG---------SDL---NKEIFYV----- 518 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~---------~~l---r~~i~~v----- 518 (1064)
+..+++++ |++.+||+++|+|+||||||||+++|+|+.++ +.|.|.+.|.. ..+ ..+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45689998 99999999999999999999999999999854 45677765522 111 1235555
Q ss_pred ecCCCC---Cc---ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 519 PQRPYT---AV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 519 ~Q~p~l---~~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
+|+|.. +. .++.|.+..... +......+..+..++++.+++.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcC
Confidence 998853 22 255565543211 1001123457888999999993
No 483
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.07 E-value=7.6e-06 Score=105.94 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=65.3
Q ss_pred CCCcChHHHHHHHHHHHH------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEE
Q 001511 576 GDELSLGEQQRLGMARLF------YHK--PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL------~~~--P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~I 644 (1064)
...|||||+=.++||-+| ..+ -++++|||||..||++....+.+.+.+ .+.+||+|||+.++...+|++
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 458999999877776655 456 699999999999999999998887764 479999999999999999999
Q ss_pred EEEeCCC
Q 001511 645 LSLDGEG 651 (1064)
Q Consensus 645 l~l~~~g 651 (1064)
+.+..++
T Consensus 893 i~V~k~~ 899 (908)
T COG0419 893 IRVKKDG 899 (908)
T ss_pred EEEEecC
Confidence 9998654
No 484
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=4.1e-06 Score=98.49 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=59.0
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C------c------cccccEEEEec
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G------S------DLNKEIFYVPQ 520 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~------~------~lr~~i~~v~Q 520 (1064)
.+..+++++ |++.+||+++|+|+||||||||+++|+|+.+++.+.+-..|. + . ..|..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 456899999 999999999999999999999999999999988644332232 1 0 12457999999
Q ss_pred CCCCC-cccHHHHhc
Q 001511 521 RPYTA-VGTLRDQLI 534 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~ 534 (1064)
+...+ ..++.++..
T Consensus 220 d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 220 DESPLMRIKATELCH 234 (434)
T ss_pred CCChhhhHHHHHHHH
Confidence 87544 345555554
No 485
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.04 E-value=4.1e-05 Score=98.18 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=44.3
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHH---HhcCcEEEEEccChhHHHh
Q 001511 589 MARLFYHKPKFAILDECTSAV-TTDMEERFCAKV---RAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaL-D~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~ 640 (1064)
|+|++..+|+++++|||+.+| |+...+.+.+.+ ++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688899999999999999999 688877776655 4568999999999998754
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=98.01 E-value=4.4e-06 Score=96.82 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=63.0
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
-++.+.-.+++|++++|+|+||+|||||++.|+|..++..|+|.+++.. ...++++++++|+.++++.....++.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 3566666788999999999999999999999999999999999987632 2335689999999988876666666554
No 487
>PRK14079 recF recombination protein F; Provisional
Probab=97.97 E-value=1.4e-05 Score=92.43 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=58.0
Q ss_pred CcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 578 ELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
-+|+|||+++++|+.|+ .+|++++||||++.||......+.+.+.+...++|..|+ ...-+|+++.++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~---~~~~~~~~~~~~ 339 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE---APPGAALTLRIE 339 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC---CCCCCceEEEEe
Confidence 58999999999999998 899999999999999999999999988655455555554 334578999997
Q ss_pred C
Q 001511 649 G 649 (1064)
Q Consensus 649 ~ 649 (1064)
+
T Consensus 340 ~ 340 (349)
T PRK14079 340 A 340 (349)
T ss_pred c
Confidence 6
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.96 E-value=1.1e-05 Score=93.29 Aligned_cols=67 Identities=22% Similarity=0.177 Sum_probs=45.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCCC--Cc-cEEEeCCCC-----ccccccEEEEecCCC-----CCcccHHHHhcC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL--VS-GHIAKPGVG-----SDLNKEIFYVPQRPY-----TAVGTLRDQLIY 535 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~-G~I~i~g~~-----~~lr~~i~~v~Q~p~-----l~~~Ti~eni~~ 535 (1064)
++|..++|+||+||||||++++|++.+.+ .+ +.|.....+ ...+...+.++|... .|...+++.+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 58999999999999999999999999843 33 355443322 123344678888643 344567776653
No 489
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.94 E-value=0.00026 Score=87.14 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=151.3
Q ss_pred hHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001511 764 VAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR 843 (1064)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~ 843 (1064)
+.++.++-..+.+.++..-+.++...+........ ..+.+..+-+.++..+++|..+.+.-++..++...+.+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVL---WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333344333333322222 212222223345555666665555554444444433333332
Q ss_pred CCCceEEeccCC-CCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhc
Q 001511 844 KNSFYKVFNMSS-KSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 922 (1064)
Q Consensus 844 ~~~~Y~~~~l~~-~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~ 922 (1064)
+..--....+++ ...+.-+++++|++++.+.+++....+.-.++.++++..-+... ++.-..++.+...+...+...+
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~l~~i~l~~~~l~~~~~~~~ 174 (571)
T TIGR02203 96 KLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYY-SWQLTLIVVVMLPVLSILMRRV 174 (571)
T ss_pred HHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHH
Confidence 111001111111 13446689999999999999888888877777777766655543 2222333334444555566777
Q ss_pred CCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 001511 923 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN 1002 (1064)
Q Consensus 923 ~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~ 1002 (1064)
.++..+...+.++.++++...-.....+.++|--|++.+.+....++.+++..+...+..+...+...+.+++. ++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 253 (571)
T TIGR02203 175 SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA-SLALA 253 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88888999999999999999999999999999999999999999999999999888888887777776666553 34444
Q ss_pred hhhHHHHHHHhh
Q 001511 1003 VTWGLSLLYAME 1014 (1064)
Q Consensus 1003 vg~~~~~~~~~~ 1014 (1064)
+.+.+..+.++.
T Consensus 254 ~~~~~g~~~~~~ 265 (571)
T TIGR02203 254 VVLFIALFQAQA 265 (571)
T ss_pred HHHHHHHHHHHc
Confidence 455555555553
No 490
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.91 E-value=9.8e-05 Score=85.79 Aligned_cols=164 Identities=23% Similarity=0.356 Sum_probs=109.0
Q ss_pred eEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhc-ccCCCCccEEEeCCCCccccccEEEEecCCCCCccc
Q 001511 450 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT 528 (1064)
Q Consensus 450 vs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~T 528 (1064)
|++..|++. .+.+ +-|++| ++.|+|.+=-||||||++|. |.|+---| ||. . ||=-++..
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----E---~VVT~~~a---- 286 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----E---FVVTDPDA---- 286 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----e---EEEECCCc----
Confidence 555555432 2333 458899 99999999999999999985 56653222 221 1 11111110
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCC--CCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW--GDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~--g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
+.. .. + |. .....+++..|++.+|.+..+.. -.+=||-.-|=-.|..||=..+++||+||=|
T Consensus 287 ----vki-rA-------E-DG---R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDt 350 (448)
T PF09818_consen 287 ----VKI-RA-------E-DG---RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDT 350 (448)
T ss_pred ----eEE-Ee-------c-CC---ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 000 00 0 00 13456789999999998765531 2467999999999999999999999999999
Q ss_pred CCC-----CHHHHHHH--------------HHHHHhcCcEEEEEccChh-HHHhcCEEEEEeC
Q 001511 607 SAV-----TTDMEERF--------------CAKVRAMGTSCITISHRPA-LVAFHDVVLSLDG 649 (1064)
Q Consensus 607 SaL-----D~~~~~~l--------------~~~l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~ 649 (1064)
||- |...++.+ .++.++.|.++|+|+--.. .+..+|+|++|++
T Consensus 351 sATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 351 SATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDE 413 (448)
T ss_pred cchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecC
Confidence 996 44444443 2233456888777776554 5678999999996
No 491
>PRK08149 ATP synthase SpaL; Validated
Probab=97.91 E-value=2e-05 Score=92.66 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=55.8
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---cEEEeCCCC----------ccccccEEEEecCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG----------SDLNKEIFYVPQRP 522 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~----------~~lr~~i~~v~Q~p 522 (1064)
++..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|..+|.+ ...++++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999887 888888864 11236778887654
Q ss_pred C
Q 001511 523 Y 523 (1064)
Q Consensus 523 ~ 523 (1064)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
No 492
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.88 E-value=3.8e-05 Score=91.04 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=47.0
Q ss_pred cCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC
Q 001511 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1064)
Q Consensus 454 y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1064)
+..+..+++++ +.+.+||+++|+|+||+|||||++.|+|..+++.|.+...|.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 34466899999 999999999999999999999999999999999887766554
No 493
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.85 E-value=0.00068 Score=83.97 Aligned_cols=242 Identities=10% Similarity=-0.019 Sum_probs=151.3
Q ss_pred HHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001511 765 AFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK 844 (1064)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~ 844 (1064)
.++.++-..+++...-+-+.++..++.+ ..+...++.|+++.+...+..-...+...+++-.+|.++.+.+++..++.
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~iid~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 25 AVANVLLAAATFAEPILFGRIIDAISGK--GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444455555444444455545443 22333344444444433334444455556677777777777666666653
Q ss_pred -CCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhcC
Q 001511 845 -NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 923 (1064)
Q Consensus 845 -~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~ 923 (1064)
..++. + .+..+.-+++++|++.+.+...+.+.+++-.++.+++...-+...-. .-.+++.+.+.+...+.+.+.
T Consensus 103 ~~~~~~--~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 103 PLAWHS--Q--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW-RLSLVLVVLGIVYTLITTLVM 177 (588)
T ss_pred CHHHHC--c--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 22322 1 23355778899999988766665555555555554444333322221 122223333344455677778
Q ss_pred CccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q 001511 924 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNV 1003 (1064)
Q Consensus 924 p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~v 1003 (1064)
|...++..+.++..+++.......+.+.++|.-|+..+.|....++.++++.+......+...+...+.++ +.++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 256 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA-ASTITMLA 256 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999888877777777777664 35555555
Q ss_pred hhHHHHHHHhh
Q 001511 1004 TWGLSLLYAME 1014 (1064)
Q Consensus 1004 g~~~~~~~~~~ 1014 (1064)
.+.+.++.++.
T Consensus 257 ~~~~g~~~v~~ 267 (588)
T PRK13657 257 ILVLGAALVQK 267 (588)
T ss_pred HHHHHHHHHHc
Confidence 55555555554
No 494
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.85 E-value=0.001 Score=82.01 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=145.0
Q ss_pred hHHHHHHhhHHHHHHhhcCCceehhHh-hcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001511 764 VAFLVVSRTWISDRIASLNGTTVKYVL-EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYL 842 (1064)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv-~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl 842 (1064)
..++.+.-..+.+.+.-+-+.++..++ ..+...|...+...+++.+...+.+-.-.|+..+++-++..+|...+++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666665544 4444445444443333333333333333455666655555556666666555
Q ss_pred CC-CCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHh
Q 001511 843 RK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 921 (1064)
Q Consensus 843 ~~-~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~ 921 (1064)
+. ..||.-. ...+--.++++|++...+-+.+.+..++.-++-++.+..-+...-.+-+.. +.....+...+...
T Consensus 103 ~~~~~~~~~~----~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 103 SLSPSFFDKN----RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL-VLLAVPLVLLPILL 177 (576)
T ss_pred cCCHHHHccC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 53 2333211 122334678889988876666655555444444444333332222222222 22333334445666
Q ss_pred cCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 001511 922 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001 (1064)
Q Consensus 922 ~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~ 1001 (1064)
..++..++..+.++.+++++......+.+.|+|..|+..+.+....++.+++..+...+..+...+...+-+++. ++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLV-FGAI 256 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 778889999999999999999999999999999999999999999999999888776666655555555444332 2333
Q ss_pred hhhhHHHHHHHhh
Q 001511 1002 NVTWGLSLLYAME 1014 (1064)
Q Consensus 1002 ~vg~~~~~~~~~~ 1014 (1064)
++.+.+....++.
T Consensus 257 ~~~~~~g~~~v~~ 269 (576)
T TIGR02204 257 VGVLWVGAHDVIA 269 (576)
T ss_pred HHHHHHHHHHHHc
Confidence 3334444444443
No 495
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.84 E-value=1.7e-05 Score=93.26 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=57.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1064)
+.++.++++..+..+..+++++ +++.+||+++|+|+||+|||||++.|+|+..++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 3567778877777778899999 999999999999999999999999999999999998877664
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.84 E-value=6.1e-05 Score=100.04 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=35.5
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-CCCccEEEeCC
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLVSGHIAKPG 506 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~~G~I~i~g 506 (1064)
++++.+++++++|+|++|+|||||++.+.+.+ +..+|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 46677889999999999999999999996544 45588888765
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.82 E-value=4.1e-05 Score=94.77 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcccCCCCccE--------EEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCc
Q 001511 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--------IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE 542 (1064)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~--------I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~ 542 (1064)
.+.++|+||+|||||||++++.++..+..|+ +.++|.+ + ..++ ..+ .|-.++...
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~------l---~~d~----~~i-~~~llg~~~--- 237 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT------L---RWDP----REV-TNPLLGSVH--- 237 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh------c---cCCH----HHH-hHHhcCCcc---
Confidence 4569999999999999999999988655443 4554421 0 0000 001 111222110
Q ss_pred CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001511 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622 (1064)
Q Consensus 543 ~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~ 622 (1064)
....+...+.++..|+.+...+.. .++||| +|+||| +..||+..+..+.+.++
T Consensus 238 --~~~~~~a~~~l~~~gl~~~~~g~v--------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 238 --DPIYQGARRDLAETGVPEPKTGLV--------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred --HHHHHHHHHHHHHcCCCchhcCch--------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 011223445677778766555544 378888 999999 79999999999999887
Q ss_pred h
Q 001511 623 A 623 (1064)
Q Consensus 623 ~ 623 (1064)
+
T Consensus 291 ~ 291 (615)
T TIGR02903 291 D 291 (615)
T ss_pred h
Confidence 5
No 498
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=97.81 E-value=0.00043 Score=74.33 Aligned_cols=238 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred HHHHhhHHHHHHhhcCCceehhHhhcCHH--HHHHHHHHHH-HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001511 767 LVVSRTWISDRIASLNGTTVKYVLEQDKA--SFVRLIGVSV-LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR 843 (1064)
Q Consensus 767 ~lv~Rt~ls~~va~l~g~~v~~iv~~~~~--~F~~~l~~~~-~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~ 843 (1064)
+.+.-+.+++...-+-+.++..+..++.. .....+...+ ++.+-.+.......|...+...+.|.++.+.+++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (275)
T PF00664_consen 7 LSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566655555432 2222222111 12222333444445556778888888888888877776
Q ss_pred CC-CceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhc
Q 001511 844 KN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 922 (1064)
Q Consensus 844 ~~-~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~ 922 (1064)
-. .||+ +....+-=.++|+|+++..+.+.+....+..+++-++....-+ -..++.-..++.....+...+.+.+
T Consensus 87 ~~~~~~~----~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 87 LPYSYFD----KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL-FFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp SHHHHHH----HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhh----hhcccccccccccccccccccccccccccccccchhhhhhhcc-cccccccccccchhhhhhHhhhhhh
Confidence 33 3331 1112334578999999999999999999998888665554433 4456666666666666667777778
Q ss_pred CCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 001511 923 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN 1002 (1064)
Q Consensus 923 ~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~ 1002 (1064)
.+...+...++++..+++-..=...+.+.++|=-|+.++.|.+..++..++..+...+..+...+...+-+++ -++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 240 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFI-SYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8888889989999888887777888999999999999999999999999998888877777766666666654 334333
Q ss_pred hhhHHHHH
Q 001511 1003 VTWGLSLL 1010 (1064)
Q Consensus 1003 vg~~~~~~ 1010 (1064)
+.+.+...
T Consensus 241 ~~~~~g~~ 248 (275)
T PF00664_consen 241 LILIFGAY 248 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 499
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.80 E-value=0.0016 Score=79.48 Aligned_cols=239 Identities=12% Similarity=0.030 Sum_probs=144.0
Q ss_pred HHhhHHHHHHhhcCCceehhHh-h-cCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Q 001511 769 VSRTWISDRIASLNGTTVKYVL-E-QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-N 845 (1064)
Q Consensus 769 v~Rt~ls~~va~l~g~~v~~iv-~-~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~-~ 845 (1064)
+.=+.+++....+-|.++..+. . .+...+...++.++++++..++++..-+|+..+++.++..+|.+.+++..++- .
T Consensus 13 ~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~ 92 (529)
T TIGR02857 13 ALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGP 92 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4444555555555556665553 2 23444554444444454444555555566666677766666766677766653 3
Q ss_pred CceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhcCCc
Q 001511 846 SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPE 925 (1064)
Q Consensus 846 ~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~ 925 (1064)
.||. +....+.-.++++|+++..+.+++....+..-++-++++..-+.. ..+....++...+.+...+.....+.
T Consensus 93 ~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 93 GWLQ----GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred hhhc----cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 123345667889999998877665444444333333333222221 12222222222222333334455666
Q ss_pred cchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 001511 926 FGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTW 1005 (1064)
Q Consensus 926 fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~ 1005 (1064)
..+...++++.++++-..-...+.+.|+|--|+..+.|....++..+++.++..+..+...+.+.+-+++ -+++.++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF-ATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6777778888888888888888999999999999999999999999998888877777776666666644 344444433
Q ss_pred HHHHHHHh
Q 001511 1006 GLSLLYAM 1013 (1064)
Q Consensus 1006 ~~~~~~~~ 1013 (1064)
.+..+.++
T Consensus 247 ~~~~~~~~ 254 (529)
T TIGR02857 247 VYIGFRLL 254 (529)
T ss_pred HHHHHHHH
Confidence 44444444
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.78 E-value=1e-05 Score=87.77 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=29.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhc-ccCCCCccEEEeCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPG 506 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g 506 (1064)
-+++|+.++|.||+|||||||...++ ....+.++.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 48899999999999999999988654 22344444555544
Done!