Query 001511
Match_columns 1064
No_of_seqs 502 out of 4277
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 17:01:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001511.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_812-815//hhsearch_pdb/001511hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uv9_A Fatty acid synthase alp 1.0 1 1 144670.1 -0.1 1 466-467 1-1878(1878)
2 3h0g_A DNA-directed RNA polyme 1.0 1 1 134987.6 0.0 1 466-467 1-1752(1752)
3 1twf_A B220, DNA-directed RNA 1.0 1 1 133493.3 0.0 1 466-467 1-1733(1733)
4 4f92_B U5 small nuclear ribonu 1.0 1 1 132883.5 -0.2 1 466-467 1-1724(1724)
5 3cmw_A Protein RECA, recombina 1.0 1 1 131421.1 0.0 1 466-467 1-1706(1706)
6 2pff_A Fatty acid synthase sub 1.0 1 1 130056.5 -0.3 1 466-467 1-1688(1688)
7 3cu7_A Complement C5; Mg domai 1.0 1 1 129042.2 -0.2 1 466-467 1-1676(1676)
8 2b39_A C3; thioester, immune d 1.0 1 1 127894.2 -0.2 1 466-467 1-1661(1661)
9 3prx_B Cobra venom factor; imm 1.0 1 1 126484.9 -0.2 1 466-467 1-1642(1642)
10 1xi4_A Clathrin heavy chain; a 1.0 1 1 125653.0 -0.4 1 466-467 1-1630(1630)
No 1
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*
Probab=1.00 E-value=1 Score=144670.11 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~l~~~ll~eLla~qfaspvrwieTQd~l~~~~~~er~vEiGp~~tl~~ma~rt~~~~~~~~d~~~~~~~~~l~ 80 (1878)
T 2uv9_A 1 MRPEVEQELAYTLLVELLAYQFAMPVRWIETQDVILAEKRTERIVEIGPSDTLGGMARRTLQSKYEAYDAATSVQRQILC 80 (1878)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGSCCCHHHHHHHHHTTSCCSEEECCSSSCTTHHHHHHHHHHTTHHHHHHHTCCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 98621889999999999998860842364579987167681289987883787899999997552332212457504641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~d~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~~~d~~~~a~~~~~~l~a~~~k 160 (1878)
T 2uv9_A 81 YCKDAKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRALVAQKLK 160 (1878)
T ss_dssp TTTTHHHHTTCCCCC-----------------------------------------------------------------
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 55777550465788876766666555677765556666667787788999987888899888998989999999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~i~~~~~i~~l~~G~St~~Ne~lgdl~~ef~~~p~~~e~~~l~~l~~~~~~~~~g~~g~~~~~~i~~~~~~k~p~g 240 (1878)
T 2uv9_A 161 KELTEIPPSKAIKDLVGGKSTLQNEILGDLGKEFGSTPEKPEDTPLDELGASMQATFDGQLGKQSSSLIARFVSSKMPGG 240 (1878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99656784131988718813678889998888736899860019799999998634689874679999999974228998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~l~~~wglg~g~~~~vl~~~~~~~p~~rl~~~~~a~~~~d~~~~~~a~~~gi~l~~~~~~~~~~~~~~~~~v 320 (1878)
T 2uv9_A 241 FNITAVRKYLETRWGLGPGRQDGVLLFAITAEPPSRLGSEADAKAYFDNLANKYASYAGITLSSPSSGGDGGAAGGAMLM 320 (1878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 78799999997245888742145410001258765679999999999999999999709420366666666677766145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 d~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~E~g~~~~~~i~p~f~~~kar~~d 400 (1878)
T 2uv9_A 321 DPAAIDALTKDQRALFKQQLEIIARYLKMDLRAGDKAFVASQESQKALQAQLDLWQAEHGDIYAAGIEPAFDPLKARVYD 400 (1878)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTSCCCCGGGCEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCEEECC
T ss_conf 69999999999999999999999998588755430010223342798999999999872530764576666825013455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 s~Wn~arqd~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~ 480 (1878)
T 2uv9_A 401 SSWNWARQDALSMYYDIIFGRLRVVDREIVSQCIQIMNRSNPLLLEFMQYHIDHCPTERGETYQLAKELGQQLIENCKEV 480 (1878)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 37799999999999987448643331889999999986067589999999985275224640789999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ~~~~p~~~~~~~~~~p~t~~~~~g~~~y~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1878)
T 2uv9_A 481 LGKPPVYKDVSIPTGPQTTIDARGNIQYQEVPRASARKFEHYVKQMAEGGPISQYSNRTKVQNDLRSVYKLIRRQHRLSK 560 (1878)
T ss_dssp TTSCCCBCCCSCCEEEEEEECTTSCEEEEEEECTTCCSHHHHHHHHHHCCGGGCEECHHHHHHHHHHHHHHHHTTCCSCH
T ss_pred HCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 53798000467788983377478856778503312121888899986157643333421024678999999863123433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~l~rk~~~~~w~~~~~lt~~~~~~l 640 (1878)
T 2uv9_A 561 SSQLQFNALYKDVIRALAMNESQIMQDGKDRRRGRNGNGNGNHSRPGKVETIPFLHLRKKDEFGNWEYSKKLTGIYLDGL 640 (1878)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------------------------CEECCCSSEEEEECTTSCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 56888988788888764025332454433355665555555445667656776377664057776431542017777667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~~~~~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~e 720 (1878)
T 2uv9_A 641 EAAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQ 720 (1878)
T ss_dssp HHHHHHCBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHH
T ss_pred HHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 64124687878998999899986899999999997899899970687677799999999986436973899976799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVn 800 (1878)
T 2uv9_A 721 DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILP 800 (1878)
T ss_dssp HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCE
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999997640248997489857644567887553686789999999999999999999999868877579999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ISS~ag~~gg~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~~~~~~~~~~~~plr~~sPeEVA~av 880 (1878)
T 2uv9_A 801 LSPNHGTFGNDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSANNLVAEGVEKLGVRTFSQQEMAFNL 880 (1878)
T ss_dssp ECSCSSSSSCCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSHHHHTHHHHHTTTCCCBCHHHHHHHH
T ss_pred ECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 75435356986089999999999999999997179828999985445067654552046999985688888999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 lfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~~lr~~l~~~~~~~~al~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 960 (1878)
T 2uv9_A 881 LGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMTKLRKEIMETSAIRQAVIKETAIENKVVNGEDHEALYRRVITEPR 960 (1878)
T ss_dssp HHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 99948841036357679997689700347889999999876023213443220132210014565520001234433345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~~l~~~~p~l~~~~~~~~~l~~~l~~~~dl~~~~vv~g~~e~g~~g~~rtr~~~e~~g~~s~~g~~ela~~mgli~~~~~ 1040 (1878)
T 2uv9_A 961 ANLKYPFPELPDWDKDIKPLNDQLRGMVNLDKVVVVTGLAEIGPWGNARTRWEMEAYGKFSLEGCVEMAWMMGLIKNHNG 1040 (1878)
T ss_dssp CCCCCCCCCCCCCCCCCHHHHHHHTTCSCTTSCEEECCCEEEETTEEHHHHHHHHHTSSCCHHHHHHHHHHTTSEEEEEE
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_conf 55303577764455555567888763000121012431576675444302567653000117669999998431121145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~~~~gw~d~~~~~~v~~~~i~~~~~~~i~~~tgir~~~~~~fd~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1120 (1878)
T 2uv9_A 1041 PLKGKPYSGWVDAKTGEPVDDKDVKAKYEKYILEHSGIRLIEPELFGGYDPNRKQLLQEVVIEQDLEPFEASKEQAEEFK 1120 (1878)
T ss_dssp ESSSSEEEEEEESSSCCBCCHHHHHHHHHHHHHHTSEEEECCGGGGTTCCGGGEEEEEEEECCSCCCCEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCC
T ss_conf 32355565532245577453235679999999983398877642368998788888888641567774446713455342
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~~~~i~~~~~~~~~w~~L~~G~~~i~p~~~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL~~ 1200 (1878)
T 2uv9_A 1121 REHGDKVEIFEIPETGQYTVRLRKGATLLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLS 1200 (1878)
T ss_dssp HHHGGGEEEEECTTTSCEEEEECTTCEEEEEEEECCSCCEEEECCTTCCHHHHTCCHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 13799725850798699999997698756424777754078985898887656999999972599999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~~~lg~~GP~~tv~tAC 1280 (1878)
T 2uv9_A 1201 SGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGAC 1280 (1878)
T ss_dssp TTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHHHTCCCCCCBCCBCCGG
T ss_pred CCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 79997144302347652379974577648899999999974378873133211477999999999638878728875720
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ASsl~Al~~A~~~I~sG~advalvGGvd~~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~Gfv~gEGag~v 1360 (1878)
T 2uv9_A 1281 ATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQ 1360 (1878)
T ss_dssp GHHHHHHHHHHHHHTTTSCSEEEEEEEECCCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCCCBCBBCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 48999999999999769988799742023886789999973302345255524789655758876678997521304899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 VL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~~~~~~~i~~~~~~~~ 1440 (1878)
T 2uv9_A 1361 VIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEY 1440 (1878)
T ss_dssp EEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98419999877996689998999956887557888773144442321355798532267788887778888887665566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ALa~aGl~~~DId~v 1520 (1878)
T 2uv9_A 1441 LYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALATWGLTIDDLGVA 1520 (1878)
T ss_dssp HHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf 66667777653023322333322577888788888888888999998635552225749999999999849988890089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 eaHGTgT~~gD~~E~~al~~~f~~~~r~~~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~iPp~~n~d~~dp~i~ 1600 (1878)
T 2uv9_A 1521 SFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVME 1600 (1878)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCEECCCTTCCSBCGGGG
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 97177786557999999999876317777895268842014577576755999999999986299788788899997655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 ~~~~v~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p~~~~~~l~~~~~~~y~~r~~~r~~~~~~~~~~~~~~~~l~~ 1680 (1878)
T 2uv9_A 1601 QFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHPKYLFATLDKAQYEAYCVKVQARQKKAYRFFHNGLINNKLFV 1680 (1878)
T ss_dssp GCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECTHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 43423345655557888789982487898368999911771020048899999999999999999999999873598642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1681 ~~~~~~~~~~~e~~~~l~p~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1760 (1878)
T 2uv9_A 1681 AKDKAPYEDRIQSKVFLNPQSRVTQESNGELKFPAEPVTPTGDKKQSGTQTPSESDAASAEQTQRTLEALAATAASPASR 1760 (1878)
T ss_dssp CCCSCSSCGGGHHHHHHCTTCCCEECTTSCEECCC---------------------------------------------
T ss_pred CCCCCCCCHHHHHHHCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 16789998466776417857633546677547315555544332345665566777411367888888877751578983
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1761 IGiDIveI~Ri~~~~~~F~~RifT~~E~~~~~~~~~~~~~lAgRfAAKEA~~KAlGtG~~~~g~~~~dIeI~~d~~G~P~ 1840 (1878)
T 2uv9_A 1761 VGVDVESVDSINIDNEEFISRNFTEREQAYCRRAPNPRASFAGRWTAKEAIFKSLGVASKGAGAAMREIEVINDANGAPE 1840 (1878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 32775366887444468999709999999998576588899999999999999856576778877527999988999847
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
+
T Consensus 1841 v~l~g~a~~~~~~~g~~~i~lSISHd~~yA~A~vI~e~ 1878 (1878)
T 2uv9_A 1841 VHLHGAAAEAAKQAGVKTVNVSISHGDLQAVAVAVSRT 1878 (1878)
T ss_dssp --------------------------------------
T ss_pred EEECHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEC
T ss_conf 99897999999976998699999667990999999949
No 2
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=134987.61 Aligned_cols=1 Identities=0% Similarity=0.969 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~s~~~~~~i~~i~Fg~~S~eeI~~~Sv~~I~~~~~~d~~~~~P~~~Gl~D~rlG~~~~~~~C~TCg~~~~~Cp 80 (1752)
T 3h0g_A 1 MSGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGETMADCP 80 (1752)
T ss_dssp -CCCSSCCCSSCCCCCCCBEECCCCHHHHHHHCCCCCCCTTCTTCSSSSSCCSSSSSSSCCCSSSSCCCTTSCCSSSSCC
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98666887767611652689945998999972746885600024556877789975712368899997899999878378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 GHFGHIELa~PVfHpgF~~~I~kILr~vC~~C~klll~~~~~~f~~~lrlrd~k~r~~~V~~~ck~k~~Ce~~~~~~~~~ 160 (1752)
T 3h0g_A 81 GHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDN 160 (1752)
T ss_dssp CCCEECCCCSCBCCHHHHHHHHHHSSSSCTTTCCCSCCSCSHHHHHHHHSSCTTTTHHHHHHHHHHCCCCCSSTTCCSSC
T ss_pred CCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 85146641533584006689999999999875420466336999999975589999999999814354467877544210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~gCG~~qP~IRKeglkl~~~~k~~k~~~~~~~k~~LtP~eVl~ifk~IsdeD~~lLGl~~~~~rPewm 240 (1752)
T 3h0g_A 161 FDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWM 240 (1752)
T ss_dssp CCSSCCCCCCSSCSSCCCCCCCEEETTEEECCBCCSSSSCBCSSCCCCCHHHHHHHHHHSCHHHHHHSSCCSSSCCGGGS
T ss_pred HHCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHE
T ss_conf 00012223456898688587278636589999725556554446632289999999996298899984898667984556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iL~vLPVpPp~vRPsv~ldg~~~~edDLt~~l~~II~~N~~Lk~~~~~gap~~~~~~~~~~LQ~~v~~~~dn~~~~~~~~ 320 (1752)
T 3h0g_A 241 IITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVATYMDNEIAGQPQA 320 (1752)
T ss_dssp SBSSCEECCGGGSCCCCCSSSCCCCCTTTTHHHHHHHHHHHHHGGGGCCSSSTTHHHHHHHHHHHHHHTTCTTCSSCCCC
T ss_pred EEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 73202459987667167489766778289999999998799999987305067899999999999998606778788632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~rp~k~~~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~l~~~evGvP~~~A~~Lt~Pe~vt~~ni~~l~~lv~n 400 (1752)
T 3h0g_A 321 LQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRN 400 (1752)
T ss_dssp CSSSSCCCCCHHHHHTCSSSSSTTTTSSCCCSSEEEEEEEEETTSCTTBCBCCHHHHTSCCCCCBCCTTTHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 24678887516766402011013444455568766313448997655521370999986588765567999999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 G~~~~pga~~v~~~~~~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~Vl~NRqPtLHr~sima~~~~v~~gktirlh~~v 480 (1752)
T 3h0g_A 401 GPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSV 480 (1752)
T ss_dssp CTTSSSCEEEEECTTCCBCCTTTTCSCCCCCCCSSCEEEECCCSCCEEEEECSSCCSGGGEEEEECCCCSSSSEEEEGGG
T ss_pred CCCCCCCCEEEECCCCCEEECHHHCHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHHCCCCCCEEECCCEEEECHHH
T ss_conf 98656673026637884764121011445415767378744236976898168620310121446356068636606522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 C~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~vlg~y~lT~~~~f~~~~e~~~l~~~~~ 560 (1752)
T 3h0g_A 481 TSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVP 560 (1752)
T ss_dssp SGGGTCCSSSCEEEEECCCSTTHHHHHHHTCCTTTTSEETTTTEESCCCCTHHHHHHHHHHSTTCEEETHHHHGGGGCSS
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCEEEECCHHHHHEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 78766761000246631688889999999853713261489998026641103321122004655589999999998502
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~~~~~~~pai~kp~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~l~K~~lg~~~~~li~~i~ 640 (1752)
T 3h0g_A 561 DWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIW 640 (1752)
T ss_dssp SCCSSCCCCSBCSSSCEEETTHHHHTTSCSSBCEECCCSSCCSSCTTTCSEEECBSCEEEECCSHHHHSSCTTCHHHHSS
T ss_pred CCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEECCEEEECCCCHHHHCCCCCCHHHHHH
T ss_conf 23784576615457678746667766676877730046555676877673788767077531026773457542999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~~G~~~~~~~ld~~~~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~g~l~~~~g~~~~e~~ 720 (1752)
T 3h0g_A 641 KEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESF 720 (1752)
T ss_dssp SSSCTTTHHHHHHHHHHHHHHHHHHHCCCCCGGGGSCCSHHHHHHHHHHHTTTHHHHHHHTTTTTTCCCCCSSCCTTHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99799999999999999999999866804306332658899999999999999999999999870987558898689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 e~~v~~~l~~~~~~~~~~~~~~l~~~N~~~~M~~SGakGs~~ni~Q~~~~~Gqq~~~GkrIp~g~~~rtLP~f~k~d~~~ 800 (1752)
T 3h0g_A 721 EAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSP 800 (1752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSCTTTHHHHHCSSCCHHHHHHHHTCCCCCCSTTSSSCCCSTTSSSTTSCSSCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999999864888869998662566478889999855388825786687888886688888889984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ~a~GfV~~sF~~GL~p~EfFfhtmggReGLiDTAvKTA~SGYLqRRLVk~leDv~V~YDgTVRns~g~ivQF~YGeDGlD 880 (1752)
T 3h0g_A 801 ESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLD 880 (1752)
T ss_dssp TTSSCCSSCTTTCCCHHHHHHHHHHHTTTTTHHHHTTTHHHHHHHHHHHHHTTCEEETTTEEECTTSCEEESSSSSSCBC
T ss_pred CCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCEEECCCCCEEEEECCCCCCC
T ss_conf 33761010134799889999974410322467654027675017999998752488507806868994898746777768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~~~~e~q~~~~~~~s~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~E~~~l~~dr~~lr~~i~~~~~~~~~lP 960 (1752)
T 3h0g_A 881 ATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLP 960 (1752)
T ss_dssp GGGEEEEECTTTSCCHHHHTTTSCCCTTTTCCGGGTSCSCCTTSCSSTHHHHHHHHHHHHHHTTSSSSSSSCSCCEEEEE
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67741355540247879999884212255432467788875057889999999999999999998887510431013687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~N~~R~i~~~~~~f~~~~~~~s~l~p~~~~~~v~~~~~~l~~~~g~d~l~~~~~~na~~l~~~~lr~~l~~k~~~~~~~l 1040 (1752)
T 3h0g_A 961 VNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRL 1040 (1752)
T ss_dssp SCHHHHTTTTTTTSCCCTTSCCCCCHHHHHHHHHHHHTTCCCSCCCSTTTTHHHHTSSHHHHHHHTTSSSHHHHHHSSCC
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 14999999999862778676577988999999999998654025874020565635287888988766544443421676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~~~~~~~~~~~y~~a~v~pGe~VG~iaAQSIgEp~TQMTLnTFHfAGvas~NVTlGVPRLkEIInask~ikTP~mt 1120 (1752)
T 3h0g_A 1041 NKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLT 1120 (1752)
T ss_dssp CHHHHHHHHHHHHHHHHTTBCCSSCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCSGGGHHHHHTTCSCCSCCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
T ss_conf 89999999999999998734576651103454026881234657766440443556555750099998663279997289
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 v~L~~~~~~d~e~A~~v~~~ie~t~L~~v~~~~~i~~~p~~~~~~i~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~rl~l 1200 (1752)
T 3h0g_A 1121 IYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLEL 1200 (1752)
T ss_dssp ECCCSSSCSSSTTTHHHHTTSSCCSSCSCCSCEEEECCCSTTCCCCSSSCSHHHHHHHTTCSSTTCSSCSCCCCEEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHCCEEHHHHEEEEEEEEECCCCCEEEEECHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEE
T ss_conf 99567555589999999976140789871107899994686516886258999998624233310010014652589985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~~~~~~~~~l~~~~I~~~i~~~~~~~~~v~~~d~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~i~ 1280 (1752)
T 3h0g_A 1201 DRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLR 1280 (1752)
T ss_dssp CTTSSTTTTCCHHHHTTSGGGSSTTSCCEECCCTTCSSCEEEECCCCCSCCCCCSSCCCSCSCHHHHHHHHHHTTCCCSS
T ss_pred CHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 49999874999999999998643687358515777663069998515544443222333218999999999631125884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 Gi~~I~rv~i~~~~~~~~~~~g~~~~~~~~~l~teG~nL~~v~~~~gVD~~rt~sNdI~ei~~vlGIEAAR~~Ii~Ei~~ 1360 (1752)
T 3h0g_A 1281 GVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRN 1360 (1752)
T ss_dssp CCTTCCCCCEEEEEEEEECSSSCEEEEEEEEEECCSCCCSTTTSSSSCCTTTCCCSCHHHHHHHSCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68996479986366033268875124641799921468999967698846408547899999987599999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 v~~~~G~~Vd~RHl~LlaD~MT~~G~~~~itR~Gi~~~~~s~l~~aSFE~T~~~L~~Aa~~g~~D~l~gvse~Ii~G~~~ 1440 (1752)
T 3h0g_A 1361 VIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLA 1440 (1752)
T ss_dssp TSCSSSCCCCHHHHHHHHHHHTSSSSCCCCCTTSCSCCCSHHHHHHHHSCCTHHHHHHGGGTCCBCCCCSTTGGGTCSCC
T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 99843887789999997887613876886123443057988899864897999999999726866664805776538876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~~GTG~fdll~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tp~~~s~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 1520 (1752)
T 3h0g_A 1441 PMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFG 1520 (1752)
T ss_dssp CSBTTSCEECCCHHHHHHCSCCCCCSGGGGCCCSSCSSCCCTTCSSCCCTTHHHHHC-----------------------
T ss_pred CCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77663278985788836223576445567887556666678888888887775566788876676754457878899866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 ~~~~~~~~sp~~~~~~~~~~sp~~~~~~pg~~~~sp~~s~s~P~~s~sp~~~p~sP~ysptSP~~s~tsP~ysptspays 1600 (1752)
T 3h0g_A 1521 DYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYS 1600 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65788888987777788888998977799888989877889998887988899999999999998999999999998889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 ptsps~s~tsp~yspts~~ysptSPsysptSPs~sptsPsysptsPs~sptSPs~sptspsysp~SPsySp~Sps~Sp~s 1680 (1752)
T 3h0g_A 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89998899999989888888998998888999888889998898999899888879989988998998899998889999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
.
T Consensus 1681 ps~sp~sP~~sp~sPsySp~sp~~sp~sp~~sP~sp~~sp~sP~ysp~sps~sp~sp~~Sp~sp~~sp~~p~ 1752 (1752)
T 3h0g_A 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752 (1752)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988886889888899989999998999888899998899999988889988888998789989888898998
No 3
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=1.00 E-value=1 Score=133493.30 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~i~~I~f~l~SpeeIr~~Sv~eI~~pet~~~~~~~P~~~GL~d~rlG~~~~~~~C~tCg~~~~~C~GH 80 (1733)
T 1twf_A 1 MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGH 80 (1733)
T ss_dssp -CCCSCCCSCBCCCCEEECCBCCHHHHHHTCCCCCCCSCCSCTTSCCSCCSSSSCSSSCCCTTCCCSSSCCCCTTSCCCC
T ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 98888776774512549998389899997281687142211466677776887474437646788708889988707984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 fGHIELa~PV~HigF~k~i~kiLe~VC~~Cskllld~~~~~~~~~L~~~~pk~r~~~v~e~ck~k~~Ce~~~~~~~e~~~ 160 (1733)
T 1twf_A 81 FGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQ 160 (1733)
T ss_dssp CCCEEEEEEEECGGGHHHHHHHHHHBCTTTCCBSCCTTSHHHHHHHTCCSHHHHHHHHHHHHTTCCBCCSEECCSSCTTS
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCCC
T ss_conf 60343444511598875589999877675160131422589999997107788999999984435414654200000234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~gCGa~qp~irk~gl~l~~e~k~~~~~~e~~~~~k~~Ltp~eV~eifk~I~deD~~lLgl~p~~~rPewmiLtvLP 240 (1733)
T 1twf_A 161 LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP 240 (1733)
T ss_dssp CEECCSCCCBCCCCEECSSCEEEEECSSSSCTTSCSCEEEEECHHHHHHHHTTSCHHHHHHTTCBTTTBCGGGGEEEEEC
T ss_pred CCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHEEEEEEEC
T ss_conf 44457878765877745775477651003432221022014799999999873899999984787668980205565422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 VpPp~vRPsv~ldg~~~~edDLT~~l~~II~~N~~Lk~~~~~gap~~ii~e~~~~LQ~~v~~~~dn~~~~~~~~~~~~~r 320 (1733)
T 1twf_A 241 VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGR 320 (1733)
T ss_dssp CCCTTTSCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHCCCSSCCCCCSSCTTC
T ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 69987667566589860577789999999999999999997474587888999999999999854676688743457886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 p~k~i~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~L~~~evGvP~~~A~~Lt~Pe~vt~~ni~~l~~lv~~g~~~~~ 400 (1733)
T 1twf_A 321 PVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP 400 (1733)
T ss_dssp CCCCSTTSCTTTTTTSSGGGTTCSCCSEEEEEEEECTTSCTTEEEEEHHHHTTCEEEEECCTTTHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 50567877503331122213665567653047748987626623584999985788841348999999999974986677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ga~~~~~~~g~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~VllNRqPTLHr~si~a~~~~v~~~~tirlnp~vC~~yNA 480 (1733)
T 1twf_A 401 GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA 480 (1733)
T ss_dssp CEEEEECTTCCEEETTSCTTTTCCCCCTTCEEEEECCTTCEEEEECSSCCSGGGEEEEEEEEESSSSEEECGGGHHHHTC
T ss_pred CCEEEECCCCCEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCCEEEECHHHCCCCCC
T ss_conf 74037827895785322322554404657789765126977898079864613422678997069747747655588776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 DFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~v~g~y~lT~~~~f~~~~e~~~~~~~~~~~~~~~ 560 (1733)
T 1twf_A 481 DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVI 560 (1733)
T ss_dssp CSSSCEEEEECCCSHHHHHHHHHHTBGGGGSEETTTTEESCCCCHHHHHHHHHHHSTTCEEEHHHHHHHHHHSTTCCSCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 61124565105788999999999853734588657998137651222100034104755699999999998323315853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~pai~kp~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v~i~~gel~~g~ldKk~lg~~~~~li~~i~~~~G~~ 640 (1733)
T 1twf_A 561 PTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQ 640 (1733)
T ss_dssp CCCSBCSSSCEEEHHHHHHHHSCTTCCEEECCTTCCTTCTTCCSEEEETTEEEESCCCHHHHSSCTTSHHHHHHHHHCHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEECCHHHHCCCHHHHHHHHHHHHCHH
T ss_conf 77431076157528878887678997413368776557866564898678289830166785457018999999986999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~a~~~ld~l~~l~~~~l~~~GfSigi~D~~~~~~~~~~i~~~i~~a~~~v~~~~~~~~~g~l~~~pg~~~~e~~e~~v~~ 720 (1733)
T 1twf_A 641 VCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR 720 (1733)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBCCCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999876669855653759899999999999999999999999980997658898779999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 il~~~~d~~~~~~~~~l~~~N~i~~Ma~SGAKGs~~Ni~Q~~~~~Gqq~~~Gkrip~g~~~RtLPhf~k~d~~p~s~GfI 800 (1733)
T 1twf_A 721 FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV 800 (1733)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHTSSCCHHHHHHHHSCCEECCBTTBSCCCCBTTBSSTTSCTTCCSTTTTTEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99999999999999862658871788504676547769999717677546886377788887788877788980016613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ~ssF~~GLtp~EyFfh~mggReGLiDTAvKTA~SGYLqRRLVk~ledv~V~yDgTVR~s~g~IvQF~YGeDGlD~~~~e~ 880 (1733)
T 1twf_A 801 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEK 880 (1733)
T ss_dssp CSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECTTSCEECTTCCEEESSGGGTTBCGGGEEE
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCHHHHCEECCCCCCCEEEHHHHHCCEEEEECCCEECCCCCEEEEEECCCCCCCCEEEC
T ss_conf 31000246548776554314420122000205688510003333250599705867658997899871366677421004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~r~~lr~i~~~~~~~~~~P~ni 960 (1733)
T 1twf_A 881 QSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI 960 (1733)
T ss_dssp EECGGGSSCHHHHHHHHCCCTTCTTTSCCTTTBTTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEESCH
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 65650015799999985344456322478888877877403688899999999999988999987630566344687149
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~r~i~~~~~~f~~~~~~~s~l~p~~~~~~v~~~~~~~~~~~g~d~l~~~~~~n~~~l~~~~~rs~L~~k~~~~~~~l~~~ 1040 (1733)
T 1twf_A 961 RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQ 1040 (1733)
T ss_dssp HHHHHHHHHHTTCCTTSCBCCCHHHHHHHHHHHHTTCCSCCCCSHHHHHHHHHTTHHHHHHHHHHSCHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999888773135554345788999999999998643015876200555525277888876654545556666177899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~l~~i~~ky~~a~v~pGe~VG~iaAQSigEp~TQMTLnTFHfAGva~~NVTLGVPRLkEIinask~ikTP~mtv~L 1120 (1733)
T 1twf_A 1041 AFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120 (1733)
T ss_dssp HHHHHHHHHHHHHHHHBCCTTCCHHHHHHHHHHHHHTTCCC----------CCSCCHHHHHHHHTTTCSSCSSCEEEEEB
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99888899999998655789860156765316885312355544415612557436758899999751378997389995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~~~~e~A~~v~~~ie~ttL~dv~~~i~i~~dp~~~~tvi~ed~~~~~~y~~i~~~d~~~~~~~~~~~~lrl~l~~~ 1200 (1733)
T 1twf_A 1121 EPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA 1200 (1733)
T ss_dssp CSSSSSCHHHHHHHHHHHSCEEGGGTEEEEEEEECCCSSSCSSGGGHHHHHTSSCC----------CCCSEEEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHHHCEEEHHHHHHEEEEEECCCCCCEEEECCHHHHHHHHCCCHHHHCCHHHHCCCCEEEEEECHH
T ss_conf 77543259999999876311489982016799973676640331322343433225677621003210340058996698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~~~~~~l~~~~I~~~i~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~v~Gi~~I~ 1280 (1733)
T 1twf_A 1201 AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIE 1280 (1733)
T ss_dssp HHHHTTCCHHHHHHHHHHHHGGGEEEEECCTTSSSCEEEEEEC----------CCTTHHHHHHHHHHHHHCEEESCTTCC
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCC
T ss_conf 89763799999999998751777512047764000111332026752223332014799999999763004771578854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 r~~i~~~~~~~~~~~g~~~~~~~~~L~teG~nL~~vl~~~~VD~~rt~SNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~G 1360 (1733)
T 1twf_A 1281 RVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDG 1360 (1733)
T ss_dssp CEEEEEEEEEEECTTSSEEEEEEEEEEEESCCHHHHTTSTTBCTTTCBCSCHHHHHHHHCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79995355312357775245762389960514999960477254110434599999875699999999999999986058
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 i~Vd~RHl~LlaD~MT~~G~~~~itR~Gi~~~~~S~L~~aSFE~T~~~L~~Aa~~g~~D~l~gvsenII~G~~~~~GTG~ 1440 (1733)
T 1twf_A 1361 SYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA 1440 (1733)
T ss_dssp CCCCHHHHHHHHHHTTTBSSCCCSSSCSSSCSSCCTTSSCCSSCSHHHHHHHHHHTCEECCCSHHHHHHTTCCCSSGGGS
T ss_pred CCCCCHHHHHHHHHHCCCCEECCCCHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 63462334323555600763203331322266887221032254389999987514767355510001047777787740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 FdLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1520 (1733)
T 1twf_A 1441 FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT 1520 (1733)
T ss_dssp SEEEECSCCC----------------------------------------------------------------------
T ss_pred EEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79997103312000244333344467888897667875456788996545658744357886545677865666778777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 ~~~~~~~~~~~~~~~~~~sP~~~~~~~~~s~~s~~~s~~~p~~~~~sp~~~~~sp~~sp~sp~~sptsp~~sp~s~~~~p 1600 (1733)
T 1twf_A 1521 SPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1600 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88888887888877787766667778777988988899998788888666778877788898888889888999988788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 tsp~ysp~sp~~sptsp~~sptsp~ysP~sp~~sptsp~ysp~sp~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp 1680 (1733)
T 1twf_A 1601 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP 1680 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89887999988778998889888887887777888887788989887999998899999889888877889998899999
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
.
T Consensus 1681 ~y~p~sp~~sp~sp~~~p~~p~~~p~sp~~~p~~p~~~~~~~~~~~~~~~~~~ 1733 (1733)
T 1twf_A 1681 SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR 1733 (1733)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 88999999899999989887787999988799997778430134543421689
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=132883.47 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~l 80 (1724)
T 4f92_B 1 ALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTL 80 (1724)
T ss_dssp -CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBC
T ss_pred CCCCCCEECHHHHCCCCCCCCCCCCCEECCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCC
T ss_conf 99961023476634533221024784308999763036896158548877899987677652576599888744789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 n~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 81 NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp CHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999758993999968814699999999999998623434444579988999899799999999999977754
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~ 240 (1724)
T 4f92_B 161 YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEM 240 (1724)
T ss_dssp TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79889999799888714358999999887999999758853044547588999555442995679999999999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 241 TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp HTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 79998099995456999999998678888886997999766731799965687541456677889999999997569968
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F 400 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 400 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf 99878889999999999998764552122133330578887766402444889998645778875999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHH
T ss_pred HCCCCEEEEECCHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 77997499984266713888870699828877047678756389999987640126888887647999835025999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~ 560 (1724)
T 4f92_B 481 LLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAA 560 (1724)
T ss_dssp HTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 97499851020331078899999987024789999999964378877532746543671001236378999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~ 640 (1724)
T 4f92_B 561 LMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLL 640 (1724)
T ss_dssp HHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHH
T ss_pred HHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHH
T ss_conf 99988799014067786434448799998368999999998635888999999999757752166770778999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~ 720 (1724)
T 4f92_B 641 ERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKR 720 (1724)
T ss_dssp HHSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 23997768878885899999999997699866542898999999999999999999999859899999999999999828
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 ~w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~ 800 (1724)
T 4f92_B 721 MWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVE 800 (1724)
T ss_dssp SCTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEE
T ss_pred CCCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEE
T ss_conf 89988833068999999999998269999999728988999997794579999999997898538999971677559999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~ 880 (1724)
T 4f92_B 801 LTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQ 880 (1724)
T ss_dssp EEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEE
T ss_pred EEEEECCCCCHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCE
T ss_conf 99864463553225773059999994698838888899863002677459999998888999818999997401077734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliae 960 (1724)
T 4f92_B 881 LPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAE 960 (1724)
T ss_dssp EEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 65424234478888998743458878855446888999997267899979999999996689968999379887469999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 lail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~ 1040 (1724)
T 4f92_B 961 FAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ 1040 (1724)
T ss_dssp HHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCC
T ss_conf 99999998589987999868299999999999998442209789999799781211158999999887999999838444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPv 1120 (1724)
T 4f92_B 1041 RKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPV 1120 (1724)
T ss_dssp CHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSS
T ss_pred CCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 64135231897010110478787639999999999986368886399992888999999998679987758948888888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l 1200 (1724)
T 4f92_B 1121 PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYL 1200 (1724)
T ss_dssp CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf 70899980367771666653201499999985379972155788899999999999887626430222013399999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~ 1280 (1724)
T 4f92_B 1201 EKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPI 1280 (1724)
T ss_dssp TTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCH
T ss_pred HHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCH
T ss_conf 64142889998747889977999999999999999779984999886997578988618999567113675556677999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1281 YDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHH
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99997615135788788628999965457789999737997035454411178999999854348899999999730799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 ~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~ 1440 (1724)
T 4f92_B 1361 RRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTK 1440 (1724)
T ss_dssp HHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCC
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 98730732025665335567899999999999999988899986998786668999999977899999999985443698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~~~~r 1520 (1724)
T 4f92_B 1441 VRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR 1520 (1724)
T ss_dssp HHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88899884078454566436068999999986389777744457889999999999977886776799999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 l~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~ 1600 (1724)
T 4f92_B 1521 LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTD 1600 (1724)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCH
T ss_conf 99999999997898899999999999999478867768734799898999999977999999998589999999977996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 ~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr 1680 (1724)
T 4f92_B 1601 SQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR 1680 (1724)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEEEE
T ss_conf 89999999998689638999980573134797599999998547778706567899887227799999889994999998
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 1681 ~~~~~~~~~~l~f~~p~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1681 LTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp ECCSSEEEEEEEEECCSSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred EECCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEECC
T ss_conf 81477863899999379995469999983573455636887459
No 5
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=1.00 E-value=1 Score=131421.09 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~ 80 (1706)
T 3cmw_A 1 GAMHGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR 80 (1706)
T ss_dssp -----------CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHH
T ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 94010354356762036967899886159967981899988899977999999999886489953999923750789998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~ 160 (1706)
T 3cmw_A 81 KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 160 (1706)
T ss_dssp HTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 52667444034366848999999999986068778997560453023222322332016799999999999999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~tVIvTNqv~s~~g~~fgd~~~a~~g~~l~h~ad~~I~L~r~~~~k~ge~~~G~~RrL~V~K~R~~~p~~~~~F~I~~g 240 (1706)
T 3cmw_A 161 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 240 (1706)
T ss_dssp TCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETT
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEC
T ss_conf 99799994044323433575423567624021077899998525555432145762799999646887775089999968
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~GI~~~~~Ll~la~e~g~i~k~~~~~~~~g~~I~~~~~~A~~~l~~~p~l~~~I~rsIre~~~~~~~~~~~~~g~~~~~~ 320 (1706)
T 3cmw_A 241 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSGTTGS 320 (1706)
T ss_dssp TEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHHHHHHHHCSSCCC------------
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 85256232366666552888743554421131045514354454128204578887776652577355531035433233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~l~~a~~~i~~~fg~~~~~~l~~~~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLa 400 (1706)
T 3cmw_A 321 TGSMAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 400 (1706)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHH
T ss_conf 11123305678999999999998737786202332222457532268589998755499289847999948999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 Lq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e 480 (1706)
T 3cmw_A 401 LQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 480 (1706)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCC
T ss_conf 99999999808976999746866999999829988992880799999999999999883099899987888861411013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~ 560 (1706)
T 3cmw_A 481 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEN 560 (1706)
T ss_dssp SCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCC
T ss_conf 54454205699999999999999999984997999720100146546888667998503023779999985241146764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~~~~~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~ 640 (1706)
T 3cmw_A 561 VVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETA 640 (1706)
T ss_dssp EEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEECCCCEEEECCCEECCCHHHHHHHHHHCHHHH
T ss_conf 66767999999669999887489998538874545317776653383640366785078450365788999976298999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ie~~~~~g~~~~l~~~~~~~~~~i~TG~~eL 720 (1706)
T 3cmw_A 641 KEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSL 720 (1706)
T ss_dssp HHHHHHHHHHHCSSCCC----------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999972567755544333211243212232267999999999999987266872001212346665003681899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 D~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~ 800 (1706)
T 3cmw_A 721 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 800 (1706)
T ss_dssp HHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred HHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHEEEECCCCHHHHHH
T ss_conf 99746698278826899778999828999999999987189759996655078999997299703348946996999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~ 880 (1706)
T 3cmw_A 801 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 880 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCE
T ss_pred HHHHHHHCCCCCEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99998870599789990415634642113666763102899999999999999999849989998647776531149865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~p~gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~g~~~~l~~~~~~i~k~ 960 (1706)
T 3cmw_A 881 TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKA 960 (1706)
T ss_dssp EESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEECC
T ss_conf 46785541010449999971233466654668679999984688999964799997688855331266540552235236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 g~w~~~~g~~l~~~~e~a~~~L~~~~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 1040 (1706)
T 3cmw_A 961 GAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSASGSSTGSMSAIDENKQKALAAALGQI 1040 (1706)
T ss_dssp TTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHHHHHHHHCSSCCC-----------------CTTHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 76042256552524999999988692387899999999986304678766345677405553896689999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1041 EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHCCCCCCCHHCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 63657452000235553034445667256777741688889877999769999767999999997541489625997655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~ 1200 (1706)
T 3cmw_A 1121 ALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 1200 (1706)
T ss_dssp CCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55789998708888998540544127889999998875598499957467507644546655665530789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~~~~~~~~~v~v~~~n~~~~~~~~~~~~~~~~~gg~~l~~~~~~R~~~r~~~~~~~g~~~~~~~~rv~~~~~~~~~p~~~ 1280 (1706)
T 3cmw_A 1201 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 1280 (1706)
T ss_dssp HHHHHHHTTCEEEEEECEEECTTCCSBCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCE
T ss_pred HHHHHCCCCEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCE
T ss_conf 88663037769998453225641101456455564101018999999975544304653346412577740577885402
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1706)
T 3cmw_A 1281 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGS 1360 (1706)
T ss_dssp EEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHHHHHHHHCSSCCC----
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHEEEEEEECCCCCCCCC
T ss_conf 56899944666676637776555121004464201254311234201014202065666443404545331267523478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~ 1440 (1706)
T 3cmw_A 1361 TGSMSGRTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1440 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 88744678652112011688999999999985598647877887777676205897779986488999998779998589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1441 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 87879999999999986698499994577789899998199788917857895799999999998728998999746786
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 l~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~al~~~~~~r~~~~~~ 1600 (1706)
T 3cmw_A 1521 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 1600 (1706)
T ss_dssp CCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC--------CCCCBSSCSHHHHHEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 78665424343543101899999999999999997489589996344553512338986656822366520006656630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1680 (1706)
T 3cmw_A 1601 GAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAW 1680 (1706)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHH
T ss_pred CCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEEEEECCEECCCCHHHHHHH
T ss_conf 42245885475579999960567998514799999547758651488888754957874105876882624509999999
Q ss_pred -------------------------E
Q ss_conf -------------------------8
Q 001511 467 -------------------------K 467 (1064)
Q Consensus 467 -------------------------~ 467 (1064)
+
T Consensus 1681 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1706 (1706)
T 3cmw_A 1681 LKDNPETAKEIEKKVRELLLSNPNST 1706 (1706)
T ss_dssp HHHCHHHHHHHHHHHHHHHC------
T ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98799999999999999731366789
No 6
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=130056.55 Aligned_cols=1 Identities=0% Similarity=0.000 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1688)
T 2pff_A 1 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 80 (1688)
T ss_dssp CCCCCTTSSCCTTSSTTTSTTTTTTTCCSCSCSSCCTTCSSCCCCCTTTTTSSTTTSSCSCCSCSCSCSSSSSTTSSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97533332111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1688)
T 2pff_A 81 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 160 (1688)
T ss_dssp CCSSCGGGTSSTTTTTTTSSCSSCCSSSSSSTTTSTTCCCSSSTTSSSSTTTSSSCCCSCCCSTTTTSSTTTSSSSSSST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1688)
T 2pff_A 161 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240 (1688)
T ss_dssp TTTCCCCCCCCSSSSSSHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGSTTHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1688)
T 2pff_A 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 320 (1688)
T ss_dssp SSCCCCSCCCEECCCTTSSHHHHHHHHHHTTTTSSCCCHHHHTTTTTTTTTCCCCTTCSHHHHHHHHHHHTSSTTCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1688)
T 2pff_A 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 400 (1688)
T ss_dssp CCCSTTTHHHHHHHHHHHSCCTTTHHHHTTTTTTTCCCCSSTHHHHHHHHHHHHHHTTTSTTSCCCCCCCCSCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klT~~y~~~L~~~a~~~msL~GKvAL 480 (1688)
T 2pff_A 401 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTFKDKYVL 480 (1688)
T ss_dssp CCSTTCCCCCSCCCCTTCCSHHHHHHHHHSCSSSCSCSSCCCCCCSSSCCCCCHHHHHHHHHHHHTTSSSCCCCCSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111125352789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 VTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~e~~~~~ 560 (1688)
T 2pff_A 481 ITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNG 560 (1688)
T ss_dssp ECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHHSCTTSS
T ss_pred EECCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97997379999999999988498999969898999999999999853579859999947999999999999999742431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~Gg~saY 640 (1688)
T 2pff_A 561 GLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMY 640 (1688)
T ss_dssp SCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTSSCBTTH
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEECHHHCCCCCHHH
T ss_conf 25999749998888587898966689989999999999999999999999857677758999899997967556996399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 aASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e~~~~~l~~iplR~~sPEEVA~aIlFLaSd~sAs~ITG 720 (1688)
T 2pff_A 641 SESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQK 720 (1688)
T ss_dssp HHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTTTCSTTTSSSSCCCCCCCTTHHHHHHHTSTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999838984999999890747765577527899998589988999999999999967986365527
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 q~I~VDVDGG~~~~~dl~ella~lr~~L~e~seir~al~~e~a~e~~l~~g~~~~~~~~~~~~~~~a~l~~~fp~l~~~~ 800 (1688)
T 2pff_A 721 SPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYK 800 (1688)
T ss_dssp SCCCCCCSCSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCC-----CCCCCCCCCCCCCCCT
T ss_pred CEEEEECCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 47999828995424899999999998621033777753113302312566643100134588871111025789987145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ~l~~l~~~~l~g~~dl~~v~vV~Gf~e~gp~G~srtR~emE~~g~ls~e~~vELAw~mgLi~~~~g~~~g~p~~gWvd~~ 880 (1688)
T 2pff_A 801 QVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSK 880 (1688)
T ss_dssp THHHHTTTTTCSSSSCSSCEEEEEEEECSSSSTTTHHHHHHHSSCCHHHHHHHHHHSTTSCCCCSTTTTCSSSSCCCSCC
T ss_pred HHCCCCHHHHHCCCCHHHCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCEECC
T ss_conf 53215678873044622131785568778666765101144235546878999999838632126654577886630057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 tgepv~d~~i~~~~~~~i~~~tGiRl~~~~~fd~~~p~~~~~L~e~~l~~d~~~~~~s~~~a~~~~~~~~d~v~I~~i~~ 960 (1688)
T 2pff_A 881 TKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPE 960 (1688)
T ss_dssp SSSSTTSCCCTTTSSSSSSSGGGTTTSSSSCCSSSSSSCCSSSEECCCCCCCSCCCCCCCCTTHHHHHHHHSCTTSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCC
T ss_conf 78816445789999999999659988887568999978986766776078876444683336546546999707955899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~eefW~~L~~G~~~i~p~~~~~~~~vaG~Ip~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~EALedAGI~dP~ei~~~i~ 1040 (1688)
T 2pff_A 961 TGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVH 1040 (1688)
T ss_dssp CCSSSCCCCCCTTCCCCCCCCEECCSSCSCCCCCCCCCSSCCTTTBTTBCSSTTHHHHHHHHHHTTTTCSSGGGGGGGTC
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
T ss_conf 79999999769998834878897508999899898655798999986169999999999999999769998477403457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TVdtACASSL~AL~lA~~aI 1120 (1688)
T 2pff_A 1041 VSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETI 1120 (1688)
T ss_dssp CSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCCCCTTTTTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 74389995536888999999999998558989521014318899999999973984874876698866999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 rsGeaDvaLVGGvE~msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GEGAGavVLesle~Al~~G~~ 1200 (1688)
T 2pff_A 1121 LSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVP 1200 (1688)
T ss_dssp HTTTCSCBCCCCCCCCCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCSCCEEEEEECSHHHHSSSCC
T ss_pred HCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHCCCC
T ss_conf 77998899992653388789999986335266704653589923356957657999755660389996829999877995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rql~~~~~~i~~~~~~e~~~l~~e~~~~g~ 1280 (1688)
T 2pff_A 1201 IYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPS 1280 (1688)
T ss_dssp CCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHHHSHHHHHHHHHHHHHHHHHHHHSSSSCS
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69999899997789766787999874321121256667898544758889999888889999887667777777763035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGLtpdDIdyVEaHGTGT~lgD~iE~~AL~~ 1360 (1688)
T 2pff_A 1281 EDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINE 1360 (1688)
T ss_dssp SHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCSSTTCCCCCCCCCCSCSSSSTTTTTTTGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 32246788878877788888899998625886112158999999999983999889128998478773260999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 af~~~gr~~g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~d~pdp~l~~~d~v~~p~~~~~~~~~r~A 1440 (1688)
T 2pff_A 1361 MMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAV 1440 (1688)
T ss_dssp GTGGGCCCTTCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCCSCCCTTCCSSCCCCSCTTCCSSSSSSCC
T ss_pred HHHHHCCCCCCEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEE
T ss_conf 98530767798079994863525429776099999999999709878878989999887767852125866528998599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 lVnSFGFGGtNAhvILe~p~~~~a~l~~~~~~~Y~~r~~~R~~~a~~~~~~~~~~~~l~~~k~~~py~~~~e~~vlLdp~ 1520 (1688)
T 2pff_A 1441 SITSFGFGQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEEDVYLDPL 1520 (1688)
T ss_dssp CCCCCCSTTCCCCCCEECSSSCCCSCSSSTTHHHHHHHTTTTTTTHHHHHHHHHHTCSSCCCCSCSSCTTTHHHHHHCCC
T ss_pred EEEEECCCCEEEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHCCCHH
T ss_conf 89518889853899991798111038999999999999999999999999997489827557999989778986248812
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 aR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1600 (1688)
T 2pff_A 1521 ARVSKDKKSGSLTFNSKNIQSKDSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1600 (1688)
T ss_dssp CCCCCCSSSSCCCSSSSCSSCSTTTTCSSTTTSSSSTTTTTTSSCCSCCCCCEECCHHHHGGGSSSSTTTSSSSSCSGGG
T ss_pred HEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 31120798872775787898887531011221111111111111111111111111111111111111111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1680 (1688)
T 2pff_A 1601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1680 (1688)
T ss_dssp SSSSSSSCSSSSTTTTTTSSSSSSSSSCCCCSSCCCCCBCCSSSSBCCCCSSCCSTTSSSSTTTSCSCCCCCCCEETTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
.
T Consensus 1681 ~~~~~~~~ 1688 (1688)
T 2pff_A 1681 XXXXXXXX 1688 (1688)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
T ss_conf 12234679
No 7
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=1.00 E-value=1 Score=129042.18 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~l~~l~~~~~~~~~~~~y~v~~P~~lr~g~~~~v~v~~~~~~~~~~v~v~l~~~~~~~~~~~~~~v~l~~~~~~~ 80 (1676)
T 3cu7_A 1 MGLLGILCFLIFLGKTWGQEQTYVISAPKIFRVGASENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQ 80 (1676)
T ss_dssp -------------------CCCEEEEEESSEETTCCEECCEEECCCSCCBCEEEEEEETTEEEEESCCCBCCBCTTTTTE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCC
T ss_conf 93479999999851442269738999898796699259999967699888999999954888668756579972688731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~vp~~~~~~~~~~~~yv~l~~~~~~f~~~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p~~~~v~ 160 (1676)
T 3cu7_A 81 NSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKPAKRETV 160 (1676)
T ss_dssp ECCEECCCCCCCCSSCCCCCCEEEEEEESSCEEEEEECEECCCSEEEEEESCSEECTTCEECEEEEEECTTCSCCCCCEE
T ss_pred CCEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCEE
T ss_conf 31268657755667666631899999955725789998974778479977887027897899999997898741566169
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~l~dP~G~~i~~~~~~~~~G~~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~s~~F~VeEYvlP~feV~i~~~~~~~~~ 240 (1676)
T 3cu7_A 161 LTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYNFIGY 240 (1676)
T ss_dssp EEEEETTTEECCCEEECCSSSEEECCCEECCSSCCCEEEEEEEEBSSSCCCEEEEEEEECEECCCSSEECCEESCSEECS
T ss_pred EEEECCCCCEEEEEEEECCCCCEECCEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEE
T ss_conf 99998999878887641378833355134788766531599999467877437789997403486499999726757995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~d~~~~~v~v~A~Y~yG~PV~~G~a~v~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1676)
T 3cu7_A 241 KNFKNFEITIKARYFYNKVVTEADVYITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNN 320 (1676)
T ss_dssp TTSSCCEEEECEEETTTEECSEEEEEEEEEEESCSSCSCCEEESSCCBCCCEETTBEEEECCTTTTTTTTSSCCCSTTCC
T ss_pred CCCCEEEEEEEEEECCCCEEECCEEEEEEEEEECCCCCCCEECCCCEEEEEECCCEEEEEEEHHHHHHHCCCCCHHHCCC
T ss_conf 57878999999997079661068699999981024787521145422778712646999974799421014464222158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~l~v~a~V~E~~gg~~~~~~~~~i~i~~~~~~i~~~~~~~~~k~g~p~~~~v~~~~~dG~p~~~~~v~l~~~~~~~~~~ 400 (1676)
T 3cu7_A 321 KYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQE 400 (1676)
T ss_dssp SEEEEEEEEEESSSCCCEEEEECCCEECSCSEEECCBSCCSEECSSSCEEEEEEEEETTCCBCCSCEEEEEEEEEETTSC
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 56999999998789729993687799996208999824887315999689999998689983676169995143234443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ~~~~~~~~~~~t~~~G~~~~~~~~~~~~~~~~l~v~~~d~~~~~~~~a~~~~~~~~~~~~~~s~~~l~l~~~k~~~~~Ge 480 (1676)
T 3cu7_A 401 TSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKTDAPDLPEENQAREGYRAIAYSSLSQSYLYIDWTDNHKALLVGE 480 (1676)
T ss_dssp EEECCCEEEECCSSSCEEEEEECCCTTEEEEEEEEEECCTTSBGGGSCEEEEEEEECCCTTSCCCEEEECCSSSSBCTTC
T ss_pred CCCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCC
T ss_conf 33211120147779984999997898874899999981566665344434999985058777886089984577757998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ~~~v~v~~~~~~~~~~~~~~y~v~s~g~il~~~~~~~~~~~~~~~i~i~vt~~~~P~~~v~vy~v~p~~~~ge~v~ds~~ 560 (1676)
T 3cu7_A 481 HLNIIVTPKSPYIDKITHYNYLILSKGKIIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVW 560 (1676)
T ss_dssp EEEEEEECCCCSCCCCCEEEEEEEETTEEEEEEEEECCSSSSCEEEEEECCGGGSSEEEEEEEEEECCSSSCEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEECCCEEECCEEEECCCCCEEEEEEECCHHHCCCEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 59999997886667612799999958858972458715887379999646865397279999999733799879998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 i~v~~~~~~~L~v~~~~~~~~~~Pg~~~~l~V~~~~~a~v~l~aVD~svl~L~~~~~lt~~~v~~~l~~~~~~~~~~~g~ 640 (1676)
T 3cu7_A 561 LNIEEKCGNQLQVHLSPDADAYSPGQTVSLNMATGMDSWVALAAVDSAVYGVQRGAKKPLERVFQFLEKSDLGCGAGGGL 640 (1676)
T ss_dssp EEBCCCCSSCCCCEESSCCSSBCTTCEEEEEEECSSCEEEEECBEETTTTCSSCCTTCSHHHHHHHTTTTCCCCSSSCCS
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEECHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99860248658999647756669997189999978998899999713464127755479889864532247887778886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 d~~~vf~~~gl~v~t~~~~~~~~~~~~~c~~~~~r~r~~~~~~~~~~~~y~~~~~~~~~~dg~~~~~~~s~~~r~~~~~~ 720 (1676)
T 3cu7_A 641 NNANVFHLAGLTFLTNANADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISL 720 (1676)
T ss_dssp SSHHHHHHTTEEEECSSSCCCCSSSCCCCCSCC-----CCHHHHTGGGCCSSHHHHHHHHGGGSCCCSSCHHHHHHTCCS
T ss_pred CHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCC
T ss_conf 54464653787999416667765556788753223321355666665302411333333124556443301232101456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 g~~~~~~f~~cc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~~F~etw~w~~~~~~~G~~~~~~lPDsiTtWrv~ 800 (1676)
T 3cu7_A 721 GPRCIKAFTECCVVASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQLQFALPDSLTTWEIQ 800 (1676)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTCC-----CCCCCCCCCCCTTCCEESCCCCCCBCCCEEEESSEEEEEEECCSSSEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf 62778999876142565543311233333444422234445564446587525785464378748998789976279999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 ava~s~~g~G~a~~~~~~v~kpf~v~~~LP~~v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~ 880 (1676)
T 3cu7_A 801 GIGISNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKS 880 (1676)
T ss_dssp EEEEETTEEEECCCEEEEECCSEEEEEECCSCEETTCCEEEEEEEEECSSSCBCCCCEECCCTTEECSSCC---------
T ss_pred EEEECCCCEEECCCEEEEEEEEEEEECCCCCEEEECCEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCC
T ss_conf 99998996476455389997359998257738997767899999985899738999998158876984366655555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~~~~~v~v~a~~~~~v~f~i~p~~~G~~~i~v~A~~~~~~D~v~~~L~V~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 960 (1676)
T 3cu7_A 881 SKCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFP 960 (1676)
T ss_dssp -CCCCCCBCTTEEEECCEEEEECSSSCCCEEEEEEETTEEEEEEECCCEECSCEEEEEEEEEEEBTTCTTTSCBCCEEEC
T ss_pred CEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 33689998799829999999986247378999999537785499999980383678989999996555667631468985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~~~p~~~vp~s~~~~~v~~~~~~~~~~~~~~l~~~~L~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~ 1040 (1676)
T 3cu7_A 961 YRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLI 1040 (1676)
T ss_dssp CCCCTTBCTTCCCEEEEEEESSTTHHHHHHHHSSSSCCCSSSCCSCSSHHHHTTSHHHHHHHHHHHHTTCGGGCSSCHHH
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 25861348898447999998453165554313601168886389983788887650699999998760543324655167
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999999999998876300799973136799984788278999888777636689899999999977853877896667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~lA~Al~l~g~ 1200 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGDK 1200 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSCT
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 76402341148755566667643289999998735212477531799999999999865206897999999999975598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~~~~~~~iv~wL~~qr~~ 1280 (1676)
T 3cu7_A 1201 THPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRY 1280 (1676)
T ss_dssp TCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 40568999999885553326775345789987776545567776425899999999987448866789999999966479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ~Gg~~STQdT~~Al~AL~~y~~~~~~~~~~~~v~v~~~~~~~~~~~~v~~~n~~~~~~~l~~~~~~~v~~~~G~G~~~~~ 1360 (1676)
T 3cu7_A 1281 GGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSYKHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVH 1360 (1676)
T ss_dssp SSCCSTTTTHHHHHHHHHHHHHHSCCCCCCCCCCEEESSSCCCCCCCCCSSSCSCCCEECCSSSCEEECCCSCCSCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEEEEEE
T ss_conf 99832308899999999999987388888589999958988636999878860888998158981899997666899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 v~~~Y~~~~~~~~~~~f~l~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~maivdv~LpsGfe~~~~~l~ 1440 (1676)
T 3cu7_A 1361 VTTVVHKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGISANEEDLK 1440 (1676)
T ss_dssp EEEEEEBSCCSSSCCSEEEEEEEECC------------CCEEEEEEEECCCTTCCSSCCCSEEEEEECCTTCEECHHHHH
T ss_pred EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 99999420787677850589984366654446667775799999999767655666778748999966767765888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~l~~~~~~~~~~~E~~~~~v~~Y~d~~~~~~~~~~~~~~~~~~~v~~~~Pa~v~vydyY~p~~~~~~~Y~~~~~~l~~~C 1520 (1676)
T 3cu7_A 1441 ALVEGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSPATFTVYEYHRPDKQCTMFYSTSNIKIQKVC 1520 (1676)
T ss_dssp HHHSSTTCSCSBCCEETTEEEEEESCCCSSSCEEEEEEEECSSCCSSCCCEEEEEEETTEEEEEEEEEECSCCCCCCCCC
T ss_pred HHHHCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHCC
T ss_conf 88625336437999529999999301689997789999999867253364699999643775127999768840566125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 ~~~~C~c~e~~c~~~~~~~~~~~~~~~r~~~aC~~~~dy~~~v~v~~~~~~~~~~~y~~~i~~v~k~g~d~~~~~~~~~f 1600 (1676)
T 3cu7_A 1521 EGAACKCVEADCGQMQEELDLTISAETRKQTACKPEIAYAYKVSITSITVENVFVKYKATLLDIYKTGEAVAEKDSEITF 1600 (1676)
T ss_dssp STTCHHHHSCSCCCCCCSCCCCSCSSTTTHHHHSTTCCEEEEEEEEECCCSSSCCEEEEEEEEEEECCTTCCCTTCCEEE
T ss_pred CCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 89840554678734322356776888999865521560799999998651587479999999987537764467975679
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 1601 ~~~~~C~~~~l~~g~~YLimG~~~~~~~~~~~~~~~y~l~~~t~ve~wp~~~~c~~~~~~~~~~~~~~~~~~~~gc 1676 (1676)
T 3cu7_A 1601 IKKVTCTNAELVKGRQYLIMGKEALQIKYNFSFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676 (1676)
T ss_dssp ECCTTCTTCCCCSSCCCEEEESCCCCCCCSSCCCCCBCCCSSCCCBCCCSSSSSSSCCHHHHTTTHHHHHHTTSCC
T ss_pred EECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8657789997768999999888876668776632379967972899899968855578999999999998865799
No 8
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=1.00 E-value=1 Score=127894.18 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~l~~~l~~~~~~~~~~~~y~v~~P~~lr~g~~e~v~v~~~~~~~~~~v~v~l~~~~~~~~~~~~~~v~l~~~~ 80 (1661)
T 2b39_A 1 MKPTSGPSLLLLLLASLPMALGNPMYSMITPNILRLESEETVVLEAHGGQGTIQVSVTVHDFPAKKQVLSNENTQLNSNN 80 (1661)
T ss_dssp -----------------------------CBSEECTTSEEEEEEECTTCCSEEECCCCBCCSSSCCSCCBCCCCEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 98652189999999866763369619999898686599609999997799888999999715888658656459974788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~vp~~~~~~~~~~~~yv~l~~~g~~~~~~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p~~~ 160 (1661)
T 2b39_A 81 GYLSTVTIKIPASKELKSDKGHKFVTVVATFGNVQVEKVVLISLQSGYLFIQTDKTIYTPGSTVLYRVFTVDHKLLPVGQ 160 (1661)
T ss_dssp TSEEEEEEECCCCTTCCCTTCCCCEEEEEEETTEEEEEEEEECCCCCEEEEEESCSEECTTSEEEEEEEEECTTSCCCCC
T ss_pred CCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCC
T ss_conf 74332379747422457667653799999948807999998863777379856887137897799999997798740575
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~v~v~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~~~~F~VeEYvlP~feV~i~~~~~ 240 (1661)
T 2b39_A 161 TVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYYEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEK 240 (1661)
T ss_dssp CEEEEEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEEEETTEEEEEEEEEEEECCCCCCSBCCEEECSSS
T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCC
T ss_conf 07999988999788665600146687676200578876652249999960577735788999977139819999976862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~v~v~a~Y~~G~Pv~G~~~v~~~~~~~~~~~~~~~~~~~~~~~dg~G~~~l~~~~~~~~~~~~~~~~~~~ 320 (1661)
T 2b39_A 241 FYYIDDPDGLKVNIIARFLYGEQVDGTAFVIFGVQDGDRRISLTHSLTRVPINDGNGEAILKRQVLLNGVQPSRADALVG 320 (1661)
T ss_dssp SCCSSCSSCCCEEEECBBSSSCBCCEEEEEEEEEECSSCEECCGGGCEEEEESSSCEEECCCTTTTSSSCTTCHHHHSSS
T ss_pred EEECCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEHHHHHCCCCCCCHHHCCC
T ss_conf 68607886799999999727993643899999870488111367300335750876999986688202344577233057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~v~a~V~e~~gg~~~~~~~~~i~i~~~~~~i~~~~~~~~~~~g~~~~~~v~~~~~dG~p~~~~~v~v~~~~~~~~t~ 400 (1661)
T 2b39_A 321 KSIYVSATVILQSGSDMVEAERTGIPIVTSPYQIHFTKTPKFFKPAMPFDLMVYVTNPDGSPARHIPVVTQGSNVQSLTQ 400 (1661)
T ss_dssp CBCEEEEEEEETTTCCCCEECCCCCBCCSCSSBCCBSSCCSEECSSEEEECCBBCBBTTTBCCSSCCEEETTCCCCCCCS
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCEEEEEC
T ss_conf 48999999998589548991247799998617999983877637999689999999389987677259994261577877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ~~G~~~~~i~~~~~~g~y~l~v~~~d~~~~~~~~a~~~~~~~~~~~~~~s~~~l~l~~~k~~~~~Ge~~~v~v~~~~~p~ 480 (1661)
T 2b39_A 401 DDGVAKLSINTQNKRDPLTITVRTKKDNIPEGRQATRTMQALPYNTQGNSNNYLHLSVPRVELKPGETLNVNFHLRTDPG 480 (1661)
T ss_dssp SSCBCCCEEEECSCCSCEEEEEEECCSSSCTTSCCCEEEEEEECCCGGGCCCEEEEECCCSCCCTTCEEEEEEEEECCTT
T ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCC
T ss_conf 89819999978998727999999867666643344169999960687678874899846767579988999999777755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ~~~~~~~~~y~v~s~g~il~~~~~~~~~~~~~~~~~i~vt~~~~P~~~v~vy~v~p~~~~~ge~vads~~i~v~~~~~~~ 560 (1661)
T 2b39_A 481 EQAKIRYYTYMIMNKGKLLKVGRQYREPGQDLVVLPLTITSDFIPSFRLVAYYTLINAKGQREVVADSVWVDVKDSCMGT 560 (1661)
T ss_dssp TGGGCCEEEEEEECSSSEEEEEEEECCTTCSCEEEEEECCGGGSSCEEEEEEECCCCTTSCCCCEEEEEEECCCSCCSSC
T ss_pred CCCCEEEEEEEEEECCEEEECCEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCE
T ss_conf 46760389999997985997457985278747999964582437758999999960357897299888999870356554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 L~v~~~st~~~~~~Pg~~v~l~V~~~~~s~v~L~aVD~svl~L~~~~~lt~~~v~~~l~~~~~~~~~~~~~d~~~~f~~~ 640 (1661)
T 2b39_A 561 LVVKNGGKEEKHHRPGQQITLKIEADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIGCTPGSGRNYAGVFTDA 640 (1661)
T ss_dssp CEEEESSCCCSCCCTTCEEEEEEEECTTCBEEEEEECHHHHTTSGGGSCCHHHHHHHHTTSSSCCCSBCCSHHHHHHHHT
T ss_pred EEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEECHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHC
T ss_conf 89986467755549998179999958998899999714564017755479999974532036777788886533545528
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 gl~v~t~~~~~~~~r~~~~c~~~~~r~~rs~~~~~~~~~~~~~y~~~~~~c~~dg~~~~~~~~~~~~r~~~~~~g~~~~~ 720 (1661)
T 2b39_A 641 GLTLKTSQGLETQQRADPQCPQPATRRRRSVQLMEKRMDKAGQYSSDLRKCCEDGMRDNPMKFPCQRRAQFILQGDACVK 720 (1661)
T ss_dssp TBCCCSSSCCCCCCCCCSSCCC-------CCHHHHHHHHHHHTCCTTHHHHHHHTTSCCTTCCCHHHHGGGBCSCHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHH
T ss_conf 76999517767434567678643445554023455556665421044544543143468654434454320346547789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 ~f~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vR~~Fpetwlw~~~~~l~~td~~G~~~~~v~~~lPDsiTt 800 (1661)
T 2b39_A 721 AFLDCCEYITQLRQQHSRDGALELARSDLDDDIIPEEDIISRSQFPESWLWTVIEDLKQADKNGISTKLMNVFLKDSITT 800 (1661)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCC-------CCCCCCTTTCCCCCCCCCCEEEEEECCCCCCCTTSCEEEEEEEECCSSCSE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 88775121344432211222334455534444444555642134875203621145045688883135788518997306
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 Wrv~ava~s~~~g~G~a~~~~v~v~kpf~v~~~LP~sv~~GD~~~i~~~V~N~~~~~~~~v~v~l~~~~~~~~~~~~~~~ 880 (1661)
T 2b39_A 801 WEILAVSLSDKKGICVADPYEVTVMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKR 880 (1661)
T ss_dssp EEEEECEEETTTEEECCCCEEEECCCSEEEEEECCSCEESSCEEEEEEEEEECCTTCCEEEEEEECCCTTEECSSCSSCC
T ss_pred EEEEEEEECCCCCEEECCCEEEEEEEEEEEEECCCCEEEECCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 89999999799963455764899971279981178589808799999999927888557999997678875842478875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~~~~v~v~a~~~~~v~f~i~p~~~G~~~i~v~a~~~~~~~~D~v~~~L~V~p~g~~~~~~~~s~~l~~~~~~~~~~~~~~ 960 (1661)
T 2b39_A 881 HQQTITIPARSSVAVPYVIVPLKIGLHEVEVKAAVYNHFISDGVKKTLKVVPEGVRVNKTVAVRTLNPEHLGQGGVQREE 960 (1661)
T ss_dssp CEEEEEECTTCEEEEEEEEEECSCEEEEEEEEEEESSSSSCEEEEEEEEEECSSEEEEEEEEEEEECHHHHCSSSCEEEE
T ss_pred CEEEEEECCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEEE
T ss_conf 13799987999189999999852570789999994588888548999999218704788999999964556777615799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~~~~~p~~~vp~s~~~~~vsv~g~~~~~~l~~~~~~~~l~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~ 1040 (1661)
T 2b39_A 961 VPAADLSDQVPDTESETKILLQGTPVAQMTEDAIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEK 1040 (1661)
T ss_dssp ECCCCCSSBCTTCCCEEEEEEESSTTHHHHHHHSSTTTGGGSSSSCCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHH
T ss_pred EECCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
T ss_conf 86468634599983269999964430556543456245688864577741332354030789999987607665468779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1041 RQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999987536789742247999855416899998886453266798999999998667529789964556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g~ 1200 (1661)
T 2b39_A 1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLGK 1200 (1661)
T ss_dssp SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTC
T ss_pred CCEECHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 63013411477566666763338999999985442233567640699999999999764126888999999999987298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 ~a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~qr~~~gg~~STqdT~~Al~AL~~ 1280 (1661)
T 2b39_A 1201 LEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQ 1280 (1661)
T ss_dssp CCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHHCCTBTTBBCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 07999999986554787778898875147999999999986387456789999999654689981563579999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 y~~~~~~~~~~~~~v~v~~~~~~~~~~~~v~~~n~~~~~~~~~~~~~~~~v~~~G~G~~~~~v~~~Y~~~~~~~~~~~~f 1360 (1661)
T 2b39_A 1281 YQKDVPDHKELNLDVSIQLPSRNSAVRHRILWESASLLRSEETKENERFTVKAEGKGQGTLSVVTVYHAKLKGKVSCKKF 1360 (1661)
T ss_dssp HHHHSCCGGGCEECCEEBCSSSSSCEECCEESSSSCSEEEECCSCCCCEEEEECSSCCEEEEEEEEEEECCCTTSSCBSE
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCE
T ss_conf 99970868887479999948976425999878672107889955898199999855899999999992368865678752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 ~l~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~m~ivdv~lpsGfe~~~~~l~~l~~~~~~~~~~~E~~~~~~d~ 1440 (1661)
T 2b39_A 1361 DLRVSIRPAPETVKKPQDAKGSMILDICTKYLGDQDATMSILDISMMTGFSPDVEDLKTLSTGVDRYISKYEMNRDSNKN 1440 (1661)
T ss_dssp EEEEEEEECCTTSCCCTTCSCEEEEEEEEEECSSSCBCSEEEEEECCTTEEECHHHHHHHHHSSBCSCSEEEEESSSSSC
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 78999614554434666777589999999966878886289999668677347767998762534653799856057899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~v~~y~d~l~~~~~~~~~~~~~~~~~v~~~~Pa~v~vydyY~p~~~~~~~Y~~~~~~~~l~~~C~~~~C~c~e~~c~~~~ 1520 (1661)
T 2b39_A 1441 TLIIYLDKVSHTVEDCLSFKVHQYFNVGLIQPGAVKVYSYYNLDETCIRFYHPDKEDGMLSKLCHKDTCRCAEENCFMHH 1520 (1661)
T ss_dssp EEEEEESCBCSSSCEEEEEEEEECSEEESCCCEEEEEEETTCTTSEEEEEECCCSTTSTTSCCCCHHHHHHTTTTTC---
T ss_pred EEEEEECCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 99999622799996679899999767155276699998523873005899767766764661579981154668875215
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 ~~~~~~~~~r~~~ac~~~~~y~y~~~v~~~~~~~~~~~y~~~i~~v~k~g~d~~~~~~~r~f~~~~~C~~~~~l~~g~~y 1600 (1661)
T 2b39_A 1521 TEKEVTLEDRLDKACEPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSDEVQVKQERKFISHIKCREALKLKEGAHY 1600 (1661)
T ss_dssp -----CCSTTTTTTSSTTEEEEEEEEEEEEECCSSEEEEEEEEEEECSCCTTCCCSSSCCEEEEETTTHHHHCCCTTCEE
T ss_pred CCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 56767988999865630576899999998862677157999999765457765667875789870016241478889999
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
.
T Consensus 1601 limg~~~~~~~~~~~~~y~l~~~tw~e~wp~~~~c~~~~~~~~~~~~~~~~~~~~~~gc~~ 1661 (1661)
T 2b39_A 1601 LVWGVSSDLWGEKPKISYIIGKDTWVELWPEAEECQDEENQKQCEDLANFTENMVVFGCPN 1661 (1661)
T ss_dssp EEEEESTTBCSBTTBCCEECCTTCBCCCCCCTGGGGSSHHHHHHHHGGGTTTTSSSCCCCC
T ss_pred EEECCCCCCCCCCCCEEEEECCCCEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9966677615568844898279857998989235058013799999999999998768999
No 9
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=1.00 E-value=1 Score=126484.88 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~v~~P~~lr~g~~e~v~v~l~~~~~~v~v~v~l~~~~~~~~~~~~~~v~l~~~~~ 80 (1642)
T 3prx_B 1 MERMALYLVAALLIGFPGSSHGALYTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKTLFQTRVDMNPAGG 80 (1642)
T ss_dssp ----------------------CEEEEEEESEEETTSCEECEEEEESCCSCEEEEEEEEETTTCCSEEEEEEEEECTTTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEECCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCC
T ss_conf 93279999999987310336786199998985878993299999968999889999999679985587777899606887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~ip~~~~~~~~~~~~~v~v~~~~~~~~~~k~V~v~~~~~~~FiqTDk~iYrPGqtV~~rvi~~~~~~~p~~~~ 160 (1642)
T 3prx_B 81 MLVTPTIEIPAKEVSTDSRQNQYVVVQVTGPQVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKMNKT 160 (1642)
T ss_dssp TEECCEECCCGGGCCCCTTSCCEEEEEEEETTEEEEEEEEEECCCCCEEEEESCSEECTTCEEEEEEEECCC-----CCC
T ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCE
T ss_conf 07889998478766777664079999998289157889999747871999858875778978999999986877435852
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~i~dP~g~~i~~~~~~~~~~~~f~L~~~~~~G~w~I~v~~~~~~~~~~~~F~VeeYvlP~FeV~v~~~~~~~~~~~~ 240 (1642)
T 3prx_B 161 VIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSEKFFYIDGN 240 (1642)
T ss_dssp EEEEEECSSCCEEEEEEECTTCCCEEECCSSCCCEEEEEEEEETTEEEEEEEEEEECSCCCCSEEEEEEESSSEEETTSC
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCEEEEECCC
T ss_conf 89999989998999789314505888768877861389999967887179999899898468389999656405884389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~v~V~ArY~yGkPV~G~v~v~fg~~~~~~~~~~~~~l~~~~~~dg~G~~~~~~~~~~~~~~~~~~~~~~~l~V~atV 320 (1642)
T 3prx_B 241 ENFHVSITARYLYGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSRFPNLNELVGHTLYASVTV 320 (1642)
T ss_dssp CCEEEEEEEEETTSCBCCEEEEEEEEEEETTEEEECGGGCEEEEEBTTEEEEEECHHHHHHHCCCGGGTSSEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEEEE
T ss_conf 86999999996789830002899999635787521342001047746828999961350010123343453599999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~eE~gg~~~~~~~~~i~i~~~~~~i~f~~~~~~~kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~~~~tTd~~G~a~f~i 400 (1642)
T 3prx_B 321 MTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVPVVSEAFHSMGTTLSDGTAKLIL 400 (1642)
T ss_dssp EETTSSCEEEEEEEEEEEESCSCEEECTTSCSEECTTSCEEEEEEEECTTSCBCCSCEEEEGGGTEEEECCTTSEEEEEE
T ss_pred EEECCCCEEEEEEEEEEEEECCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCEEEEEE
T ss_conf 99579877981464589992030899983765438999779999999799987788439998466136638995599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 ~t~~~~~~l~i~~~~~~~~~~~~~~a~~~~~~~~y~s~~~S~syL~I~~~~~~l~~G~~~~v~~~~~~~~~~~~~i~~f~ 480 (1642)
T 3prx_B 401 NIPLNAQSLPITVRTNHGDLPRERQATKSMTAIAYQTQGGSGNYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIKYFT 480 (1642)
T ss_dssp CCCTTCCCCEEEEECCCTTSCTTTSCEEEEECEECCCGGGCCCEEEEEECCCSBCTTCEEEEEEEEECCHHHHTTCCEEE
T ss_pred ECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 78999747999999746777753235349999973477778875899706766479986999999815766666532599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 YlV~srG~Iv~~g~~~~~~~~~~~s~~l~vt~~maP~arllvYyi~~~gEvVaDSv~~~V~~~c~~kv~l~~~~~~~~Pg 560 (1642)
T 3prx_B 481 YLILNKGKIFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMPG 560 (1642)
T ss_dssp EEEEETTEEEEEEEEECCTTCSEEEEEEECCGGGCSEEEEEEEEEETTTEEEEEEEEEEBCCCCSSCEEEECCCSCBCTT
T ss_pred EEEEECCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 99993893898668995068747999997670138638999999917996998789996510456647985385557999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~v~L~v~a~p~S~vgL~aVDksV~lL~~~~~Lt~~~V~~~le~~d~gc~~g~g~d~~~vF~~aGL~~~Tn~~~~~~~~~ 640 (1642)
T 3prx_B 561 AAMKIKLEGDPGARVGLVAVDKAVYVLNDKYKISQAKIWDTIEKSDFGCTAGSGQNNLGVFEDAGLALTTSTNLNTKQRS 640 (1642)
T ss_dssp CEEEEEEEESTTCEEEEEEEEHHHHHHTTTTSCCHHHHHHHHHTTCCCCSSBCCSSHHHHHHHTTEEEEETTSCBCCCCC
T ss_pred CEEEEEEEECCCCEEEEEEEEEHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 81799999689988999996301221387676898998522002346777788864545365379289954875765434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~~C~~~~~~r~~r~~~~~~~~~~~~~~y~~~~~~~cc~~g~~~~~~~~~c~~r~~~~~~~~~c~~af~~cc~~~~~~~~ 720 (1642)
T 3prx_B 641 AAKCPQPANRRRRSSVLLLDSNASKAAEFQDQDLRKCCEDVMHENPMGYTCEKRAKYIQEGDACKAAFLECCRYIKGVRD 720 (1642)
T ss_dssp CSSCCC--------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 66787543334322024556556655412530001000036524754453223210146761678889887565553022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 ~~~~~~~~~l~r~~~~~~~~~~~~~~vR~~FpETWlW~~~~~~~~~d~~G~~~~~~~~~lPDsITtW~i~A~a~s~~~G~ 800 (1642)
T 3prx_B 721 ENQRESELFLARDDNEDGFIADSDIISRSDFPKSWLWLTKDLTEEPNSQGISSKTMSFYLRDSITTWVVLAVSFTPTKGI 800 (1642)
T ss_dssp ---------------CCSSCCTTTCCCBCCCCSEEEEEEEECCSCCCTTSCEEEEEEEECCSCCSEEEEEEEEECSSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCE
T ss_conf 22333212224454332111234452210587615772463156656678622799984799653899999998599974
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 Gva~~~~i~v~kpffv~l~LPysv~rGEq~~l~v~VfNy~~~~~~V~V~L~~s~~~~~~~~~~~~~~q~v~v~a~~~~~v 880 (1642)
T 3prx_B 801 CVAEPYEIRVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAV 880 (1642)
T ss_dssp EECBCEEEEBCCSEEEECCCCSCEETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSSCCEEEEEECSSEEEEE
T ss_pred EECCCEEEEEECCEEEECCCCCEEECCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCEEEEEECCCCEEEE
T ss_conf 42355599997788998368978842988999999991778749999999737776751367776316999889982999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 ~f~i~p~~~G~~~i~v~A~~~~~~~~D~v~k~L~V~peg~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~p~~~vpgS~~~ 960 (1642)
T 3prx_B 881 PFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDTEIE 960 (1642)
T ss_dssp EEEEEECSCEEEEEEEEEEESSSSCEEEEEEEEEEECSSEEEEEEEEEEECTTTTCSSSEEEEEECCCCCCSBCTTCCEE
T ss_pred EEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99999741361779999996687765219999999449854899999998577666776146897035621248997531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~~vsv~gd~lg~~i~~~l~~~~L~~Ll~~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l 1040 (1642)
T 3prx_B 961 TKIIIQGDPVAQIIENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQM 1040 (1642)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred EEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 79999766543332122444668999866887677899988899999999866133333575579999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~ 1120 (1642)
T 3prx_B 1041 VYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGA 1120 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 73689987663799999602089999999998863367898998889999775031778750566662342004875687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~~~~~ 1200 (1642)
T 3prx_B 1121 EEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAASTGRDH 1200 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 88645059999999852512345544316999999999998655179889999999999864990489999887447987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 W~~~~~~~~~VE~TaYaLLa~l~~~~~~~a~~iv~WL~~qr~~~Ggf~STQdTvvaLqALa~Y~~~~~~~~~~~~~V~v~ 1280 (1642)
T 3prx_B 1201 WEEYNAHTHNIEGTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQATVMAFQALAEYEIQMPTHKDLNLDITIE 1280 (1642)
T ss_dssp ----------------------------------------------------------------------CCCCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 78999841889999999999850476445799999999723479964673899999999999998647577751799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 ~~~~~~~~~~~v~~~N~~l~q~~~l~~~~~~~v~a~G~G~~~~q~~~~Yn~~~~~~~~~~~~F~L~v~~~~~~~~~~~~~ 1360 (1642)
T 3prx_B 1281 LPDREVPIRYRINYENALLARTVETKLNQDITVTASGDGKATMTILTFYNAQLQEKANVCNKFHLNVSVENIHLNAMGAK 1360 (1642)
T ss_dssp CTTCSSCEEEEESTTTSSCCEEEEESSCCCEEEEEEESSEEEEEEEEEEEECC-----CCCSEEEEEEEECCCC-----C
T ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 37987537999888653336789806998699999941489999999991358666677887799999614666776666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 ~~~~l~vc~~y~~~~~s~Mai~dV~l~SGf~~~~~~l~~L~~~~~~~i~~~E~~~~~~~~~~vilYld~v~~~~~~c~~f 1440 (1642)
T 3prx_B 1361 GALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTRLSKGVDRYISRYEVDNNMAQKVAVIIYLNKVSHSEDECLHF 1440 (1642)
T ss_dssp CEEEEEEEEEECSSSCEEEEEEEEECCTTEEEBHHHHHHHHCSSSEECCCCCEETTEESCSEEEEEEEEECSSSCEEEEE
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCEEEEE
T ss_conf 47999999976688888618999966756314551299875154353468985213468989999981378998369999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~~~q~~~V~~~qpa~v~vYDYY~p~~~~~~~Y~~~~~~~~l~~lC~~~~C~Cae~~C~~~~~~~~~~~~~r~~~aC~~~~ 1520 (1642)
T 3prx_B 1441 KILKHFEVGFIQPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIGNVCRCAGETCSSLNHQERIDVPLQIEKACETNV 1520 (1642)
T ss_dssp EEEESCCCSSCCCEEEEEEETTEEEEEEEEEEBTTBSSCCCCCEEETTEEECCCSSCCCCCCCSSCCHHHHHHHHSCTTC
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99999881451543899984548886169998687676567731489800763357876666565598898875466866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 dYvykv~v~~~~~~~~~~~y~~~i~~V~K~g~d~~~~g~~r~f~~~~~C~~~l~L~~gk~YLImG~~~~~~~~~~~~~y~ 1600 (1642)
T 3prx_B 1521 DYVYKTKLLRIEEQDGNDIYVMDVLEVIKQGTDENPRAKTHQYISQRKCQEALNLKVNDDYLIWGSRSDLLPTKDKISYI 1600 (1642)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCTTTSCEEEEEEGGGHHHHCCCTTCEEEEEECGGGEECCSSSEEEE
T ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 58999999998614875899999999874687645689769998447678755777899899950576636668860799
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
.
T Consensus 1601 l~~~twve~Wp~~~~c~~~~~~~~c~~l~~f~~~~~~~gC~~ 1642 (1642)
T 3prx_B 1601 ITKNTWIERWPHEDECQEEEFQKLCDDFAQFSYTLTEFGCPT 1642 (1642)
T ss_dssp CCTTCEEEECCCTTGGGSTTTHHHHHHHHHHHHHHHTSCCCC
T ss_pred ECCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 789608998888315247456899988999999998758999
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=125652.95 Aligned_cols=1 Identities=0% Similarity=1.433 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~pi~~~e~~~L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~ii 80 (1630)
T 1xi4_A 1 MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVI 80 (1630)
T ss_pred CCCCCCEEHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEE
T ss_conf 99899820101301652599931166652122058358997327998669999889988762255463220017776569
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~ 160 (1630)
T 1xi4_A 81 ALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 160 (1630)
T ss_pred EEECCCEEEEEEHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCHHHHHCCHHCCCCEEEEEEECC
T ss_conf 99559847996058864432302688726898548872588718757996268987628887400112567037755578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~ 240 (1630)
T 1xi4_A 161 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (1630)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 77758898532678866521465322434331556767555200148999883179999845877468899657876689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr 320 (1630)
T 1xi4_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR 320 (1630)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCEEEECC
T ss_conf 98756621233794114576037885155687999964752799843543014641466883588436788885699737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ti~r 400 (1630)
T 1xi4_A 321 KGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRR 400 (1630)
T ss_pred CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 86599999751110256764548889999999736998733579999999997678999999998295443568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 401 fk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~ 480 (1630)
T 1xi4_A 401 FQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL 480 (1630)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 97588899998879999999982589968999999899997164999999997177305587788987338699999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 481 ~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~~ll~~~~~~~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 481 RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHH
T ss_conf 45994899999999688879999986339994599999998522968899999998618998658999999998568599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 561 ~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~ 640 (1630)
T 1xi4_A 561 QCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAV 640 (1630)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99999999982898112147688998751146148999985486550368999999997680999998647888878886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 641 ~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~ 720 (1630)
T 1xi4_A 641 VHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN 720 (1630)
T ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 25676887999999845998899999999999868631022143798887632879999999972532358998772266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 56781899999999998377301568844688789999999986377999877101314536589999999856841579
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~~~~hnala 880 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALA 880 (1630)
T ss_pred HHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99973458754431665330688899999999998515899799999999887798889999999867898889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 881 kiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl 960 (1630)
T 1xi4_A 881 KIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVL 960 (1630)
T ss_pred HHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99853689988984416752389999898752820677874046884999998842456999999999816889999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 961 ~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv 1040 (1630)
T 1xi4_A 961 LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRV 1040 (1630)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHH
T ss_conf 67818899999999985240106977747999999969898999999999973787554547899999999998580559
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1041 ~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1041 MEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99998741236999999998589899999999980887999999999986399999999854888799999999984798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1121 ~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1121 VKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ 1200 (1630)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
T ss_conf 99999999835996999999999997589999999999998424554222799999985267999999982788999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~ 1280 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA 1280 (1630)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999836889999999984357999999999707899999999983898789999999863568899999877553288
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999858999999999988566823768999999999748989999999999984065267677777878999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1361 lv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999941609999999984637555457788874265469999999999986276889999987452279399999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1441 ~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~ 1520 (1630)
T 1xi4_A 1441 KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNR 1520 (1630)
T ss_pred HCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 74771776999999988536353099998733722358898777630474779998776212589999999999985586
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 1521 ~~~ai~l~k~d~l~~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd~vle~aw~~~~~d~~mPy~i 1600 (1630)
T 1xi4_A 1521 WKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFI 1600 (1630)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999866679999999997499899999999998269746999999987534780499999998058310010278
Q ss_pred -----------------------------E
Q ss_conf -----------------------------8
Q 001511 467 -----------------------------K 467 (1064)
Q Consensus 467 -----------------------------~ 467 (1064)
.
T Consensus 1601 ~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 1630 (1630)
T 1xi4_A 1601 QVMKEYLTKVDKLDASESLRKEEEQATETQ 1630 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 889999999999998888754432122469
Done!