Query 001512
Match_columns 1063
No_of_seqs 492 out of 2000
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 02:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4299 PHD Zn-finger protein 99.9 6.6E-22 1.4E-26 229.2 13.4 197 432-633 149-372 (613)
2 KOG0489 Transcription factor z 99.5 7.7E-15 1.7E-19 159.4 4.2 69 880-951 156-224 (261)
3 KOG0842 Transcription factor t 99.5 2.4E-14 5.2E-19 157.6 6.7 70 880-952 150-219 (307)
4 KOG0484 Transcription factor P 99.5 5.8E-15 1.3E-19 138.9 1.4 69 880-951 14-82 (125)
5 KOG0488 Transcription factor B 99.5 2.4E-14 5.3E-19 158.8 3.5 68 880-950 169-236 (309)
6 KOG2251 Homeobox transcription 99.4 2.9E-13 6.3E-18 142.1 8.8 68 878-948 32-99 (228)
7 KOG0487 Transcription factor A 99.4 1.1E-13 2.5E-18 152.4 3.2 67 880-949 232-298 (308)
8 KOG0843 Transcription factor E 99.4 9.8E-14 2.1E-18 141.7 2.4 64 882-948 101-164 (197)
9 KOG0850 Transcription factor D 99.4 3.6E-13 7.8E-18 142.0 5.7 69 878-949 117-185 (245)
10 KOG0485 Transcription factor N 99.3 4E-13 8.7E-18 140.2 1.8 70 880-952 101-170 (268)
11 KOG0494 Transcription factor C 99.3 1.5E-12 3.3E-17 138.7 3.3 62 883-947 140-202 (332)
12 KOG0492 Transcription factor M 99.2 3.7E-12 8.1E-17 132.5 3.5 69 880-951 141-209 (246)
13 PF00046 Homeobox: Homeobox do 99.2 2.4E-12 5.2E-17 108.4 1.2 57 884-943 1-57 (57)
14 KOG0848 Transcription factor C 99.2 2.8E-12 6E-17 137.4 -0.1 63 884-949 200-262 (317)
15 KOG0486 Transcription factor P 99.2 7.3E-11 1.6E-15 129.1 8.9 65 882-949 111-175 (351)
16 KOG0493 Transcription factor E 99.1 2.4E-11 5.2E-16 129.7 2.9 67 883-952 246-312 (342)
17 smart00389 HOX Homeodomain. DN 99.1 7.3E-11 1.6E-15 98.5 3.6 55 885-942 2-56 (56)
18 KOG0844 Transcription factor E 99.1 3.2E-11 7E-16 130.9 1.1 62 883-947 181-242 (408)
19 TIGR01565 homeo_ZF_HD homeobox 99.0 2.4E-10 5.2E-15 98.8 5.7 52 884-938 2-57 (58)
20 cd00086 homeodomain Homeodomai 99.0 1.1E-10 2.4E-15 97.8 3.2 56 886-944 3-58 (59)
21 KOG0491 Transcription factor B 99.0 4.1E-11 8.8E-16 121.2 -1.2 65 883-950 100-164 (194)
22 KOG0483 Transcription factor H 99.0 1.6E-10 3.5E-15 121.4 3.1 52 895-946 59-110 (198)
23 KOG4577 Transcription factor L 98.9 3E-09 6.5E-14 115.2 9.1 63 883-948 167-229 (383)
24 COG5576 Homeodomain-containing 98.9 8E-10 1.7E-14 112.5 3.8 55 895-949 60-114 (156)
25 KOG0847 Transcription factor, 98.9 5.4E-10 1.2E-14 117.2 1.1 69 882-953 166-234 (288)
26 KOG0490 Transcription factor, 98.8 1.9E-09 4.2E-14 112.9 2.9 64 880-946 57-120 (235)
27 KOG3802 Transcription factor O 98.8 4.4E-09 9.5E-14 118.9 5.7 62 882-946 293-354 (398)
28 KOG1244 Predicted transcriptio 98.8 2.4E-09 5.3E-14 115.4 1.9 50 523-579 280-329 (336)
29 KOG0825 PHD Zn-finger protein 98.6 2E-08 4.3E-13 119.5 1.9 53 523-582 214-267 (1134)
30 PF00628 PHD: PHD-finger; Int 98.6 7.1E-09 1.5E-13 85.9 -1.3 51 526-581 1-51 (51)
31 KOG0849 Transcription factor P 98.5 2.7E-07 5.7E-12 105.1 8.5 67 880-949 173-239 (354)
32 KOG1245 Chromatin remodeling c 98.5 8E-08 1.7E-12 123.9 4.3 87 480-583 1073-1160(1404)
33 KOG0775 Transcription factor S 98.3 1.8E-06 3.8E-11 94.1 7.5 48 895-942 185-232 (304)
34 KOG0955 PHD finger protein BR1 98.1 1E-06 2.2E-11 110.5 2.5 75 522-603 217-295 (1051)
35 KOG1168 Transcription factor A 98.1 1.2E-06 2.6E-11 95.6 2.1 64 880-946 306-369 (385)
36 smart00249 PHD PHD zinc finger 98.0 4E-06 8.8E-11 66.5 3.5 47 526-578 1-47 (47)
37 cd04718 BAH_plant_2 BAH, or Br 98.0 3.9E-06 8.4E-11 85.0 3.8 29 551-583 1-29 (148)
38 KOG0774 Transcription factor P 98.0 9.2E-06 2E-10 87.9 6.2 67 883-952 188-257 (334)
39 KOG4323 Polycomb-like PHD Zn-f 98.0 2.1E-06 4.6E-11 99.8 1.0 61 526-587 170-230 (464)
40 COG5141 PHD zinc finger-contai 97.8 2.1E-05 4.6E-10 90.9 4.6 56 520-582 189-244 (669)
41 KOG0954 PHD finger protein [Ge 97.8 9.9E-06 2.1E-10 97.1 2.0 55 520-581 267-321 (893)
42 KOG1512 PHD Zn-finger protein 97.7 1.1E-05 2.3E-10 88.3 1.7 46 524-578 314-360 (381)
43 KOG1973 Chromatin remodeling p 97.6 2.7E-05 5.9E-10 86.1 2.2 47 524-582 221-269 (274)
44 KOG4443 Putative transcription 97.5 2.8E-05 6.2E-10 92.7 1.4 57 523-586 67-123 (694)
45 KOG0383 Predicted helicase [Ge 97.5 3.2E-05 6.9E-10 94.3 1.6 53 521-583 44-96 (696)
46 KOG0956 PHD finger protein AF1 97.5 3.8E-05 8.2E-10 91.7 2.0 48 527-580 8-56 (900)
47 KOG0957 PHD finger protein [Ge 97.5 3.5E-05 7.6E-10 89.3 0.9 50 524-578 544-595 (707)
48 PF05920 Homeobox_KN: Homeobox 97.4 2.6E-05 5.6E-10 63.1 -0.5 35 906-940 6-40 (40)
49 COG5034 TNG2 Chromatin remodel 97.4 9.3E-05 2E-09 80.4 3.2 55 516-580 213-269 (271)
50 KOG2252 CCAAT displacement pro 97.2 0.00057 1.2E-08 80.9 6.9 57 882-941 419-475 (558)
51 KOG0490 Transcription factor, 97.2 0.00022 4.9E-09 75.0 2.8 64 880-946 150-213 (235)
52 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0021 4.5E-08 79.1 7.0 41 240-280 884-925 (1516)
53 KOG1146 Homeobox protein [Gene 96.2 0.0036 7.9E-08 80.1 3.9 78 881-962 901-978 (1406)
54 PF13831 PHD_2: PHD-finger; PD 95.5 0.0024 5.2E-08 50.8 -1.0 35 539-579 2-36 (36)
55 KOG1473 Nucleosome remodeling 95.0 0.023 5.1E-07 71.9 4.5 45 525-579 345-389 (1414)
56 KOG1832 HIV-1 Vpr-binding prot 94.0 0.053 1.2E-06 67.4 4.6 25 681-705 1457-1481(1516)
57 PF15446 zf-PHD-like: PHD/FYVE 93.4 0.038 8.3E-07 57.6 1.7 56 526-582 1-61 (175)
58 PF10446 DUF2457: Protein of u 92.5 0.074 1.6E-06 62.4 2.5 8 552-559 2-9 (458)
59 PF10446 DUF2457: Protein of u 92.3 0.14 2.9E-06 60.3 4.2 6 800-805 255-260 (458)
60 KOG3623 Homeobox transcription 91.7 0.35 7.5E-06 59.6 6.9 52 898-949 568-619 (1007)
61 PF04931 DNA_pol_phi: DNA poly 91.1 0.22 4.8E-06 62.9 4.7 6 497-502 533-538 (784)
62 KOG0957 PHD finger protein [Ge 91.1 0.13 2.8E-06 60.9 2.4 57 525-583 120-181 (707)
63 KOG0773 Transcription factor M 90.6 0.19 4.2E-06 57.1 3.3 51 895-945 248-301 (342)
64 PF11569 Homez: Homeodomain le 88.1 0.16 3.6E-06 44.4 0.2 43 897-939 9-51 (56)
65 KOG1246 DNA-binding protein ju 86.2 0.52 1.1E-05 60.6 3.2 50 524-581 155-204 (904)
66 KOG4443 Putative transcription 84.2 0.28 6.1E-06 60.0 -0.4 56 524-583 18-73 (694)
67 KOG4628 Predicted E3 ubiquitin 82.1 2.1 4.6E-05 49.6 5.6 46 525-580 230-275 (348)
68 KOG4299 PHD Zn-finger protein 81.1 0.88 1.9E-05 55.6 2.1 48 525-581 48-95 (613)
69 KOG1473 Nucleosome remodeling 80.3 0.27 5.9E-06 62.8 -2.5 52 525-583 429-481 (1414)
70 KOG0383 Predicted helicase [Ge 78.6 0.4 8.6E-06 59.7 -1.8 53 521-583 503-556 (696)
71 PF14446 Prok-RING_1: Prokaryo 78.6 1.1 2.4E-05 39.2 1.3 33 525-559 6-38 (54)
72 PF06524 NOA36: NOA36 protein; 77.1 5.7 0.00012 44.5 6.6 9 572-580 209-217 (314)
73 PF06524 NOA36: NOA36 protein; 73.2 11 0.00023 42.5 7.4 28 523-551 124-151 (314)
74 KOG3612 PHD Zn-finger protein 70.6 3.2 6.9E-05 50.4 2.9 53 519-580 55-107 (588)
75 COG4547 CobT Cobalamin biosynt 68.5 6.6 0.00014 47.1 4.8 38 622-659 230-267 (620)
76 PF12045 DUF3528: Protein of u 64.8 3.2 6.9E-05 42.5 1.2 28 771-798 100-127 (143)
77 KOG3241 Uncharacterized conser 64.8 2.5 5.3E-05 44.9 0.5 34 525-580 68-101 (227)
78 PF12861 zf-Apc11: Anaphase-pr 63.2 3.5 7.6E-05 39.2 1.1 48 526-582 34-81 (85)
79 KOG4323 Polycomb-like PHD Zn-f 61.3 5.3 0.00011 48.0 2.3 54 523-583 82-135 (464)
80 PF04218 CENP-B_N: CENP-B N-te 59.5 8.9 0.00019 33.0 2.8 47 884-938 1-47 (53)
81 PF09073 BUD22: BUD22; InterP 55.5 31 0.00068 41.2 7.5 22 773-794 314-335 (432)
82 PF04147 Nop14: Nop14-like fam 54.6 18 0.0004 46.7 5.7 8 475-482 180-187 (840)
83 PF13901 DUF4206: Domain of un 54.2 8.9 0.00019 41.3 2.5 44 525-582 153-199 (202)
84 KOG2038 CAATT-binding transcri 53.6 14 0.0003 46.9 4.1 10 780-789 969-978 (988)
85 KOG1189 Global transcriptional 51.8 13 0.00028 47.0 3.6 24 476-500 705-728 (960)
86 KOG2051 Nonsense-mediated mRNA 48.0 26 0.00055 45.9 5.3 16 34-49 131-147 (1128)
87 KOG2038 CAATT-binding transcri 47.9 13 0.00029 47.0 2.8 9 313-321 347-355 (988)
88 KOG0943 Predicted ubiquitin-pr 44.0 19 0.00041 47.5 3.3 26 213-238 1007-1032(3015)
89 PF13771 zf-HC5HC2H: PHD-like 43.2 14 0.00029 34.1 1.5 30 525-559 37-68 (90)
90 PF13639 zf-RING_2: Ring finge 42.0 3.7 8E-05 33.3 -2.1 43 526-579 2-44 (44)
91 KOG1734 Predicted RING-contain 39.5 9.5 0.00021 43.1 -0.1 58 522-586 222-284 (328)
92 KOG1512 PHD Zn-finger protein 39.5 7 0.00015 44.3 -1.1 47 538-587 276-323 (381)
93 PF15446 zf-PHD-like: PHD/FYVE 39.5 25 0.00054 37.5 2.9 24 537-561 120-143 (175)
94 PF04147 Nop14: Nop14-like fam 38.3 31 0.00068 44.6 4.2 11 548-558 251-261 (840)
95 PF10367 Vps39_2: Vacuolar sor 36.0 26 0.00056 32.8 2.2 30 525-558 79-108 (109)
96 KOG0127 Nucleolar protein fibr 34.1 49 0.0011 40.8 4.5 29 582-610 169-203 (678)
97 PF13832 zf-HC5HC2H_2: PHD-zin 32.4 22 0.00048 34.1 1.2 30 525-559 56-87 (110)
98 KOG0827 Predicted E3 ubiquitin 31.8 9.3 0.0002 45.0 -1.7 55 525-588 5-61 (465)
99 smart00744 RINGv The RING-vari 31.4 13 0.00028 31.7 -0.6 44 526-578 1-48 (49)
100 KOG0943 Predicted ubiquitin-pr 30.4 48 0.001 44.1 3.8 37 226-271 1322-1359(3015)
101 KOG1080 Histone H3 (Lys4) meth 29.6 46 0.00099 44.0 3.6 56 525-586 574-632 (1005)
102 KOG2114 Vacuolar assembly/sort 29.0 81 0.0018 40.8 5.4 68 486-581 813-881 (933)
103 PF05764 YL1: YL1 nuclear prot 28.2 53 0.0012 36.4 3.4 12 624-635 37-48 (240)
104 PF05764 YL1: YL1 nuclear prot 26.6 43 0.00094 37.1 2.3 8 708-715 58-65 (240)
105 PF07649 C1_3: C1-like domain; 25.4 32 0.00069 26.2 0.7 28 526-556 2-29 (30)
106 PLN02638 cellulose synthase A 25.4 42 0.00091 44.4 2.2 51 525-583 18-70 (1079)
107 PF11793 FANCL_C: FANCL C-term 24.5 33 0.00072 31.1 0.8 57 525-583 3-66 (70)
108 PF02724 CDC45: CDC45-like pro 24.5 35 0.00075 42.8 1.2 13 778-790 254-266 (622)
109 COG5406 Nucleosome binding fac 23.3 55 0.0012 41.1 2.5 28 66-93 123-150 (1001)
110 PF09073 BUD22: BUD22; InterP 22.9 88 0.0019 37.5 4.1 15 909-923 405-419 (432)
111 KOG0526 Nucleosome-binding fac 22.4 2.6E+02 0.0057 34.8 7.7 72 492-580 310-384 (615)
112 PLN02400 cellulose synthase 22.1 58 0.0013 43.2 2.5 51 525-583 37-89 (1085)
113 KOG1952 Transcription factor N 22.0 23 0.0005 45.4 -1.0 53 525-580 192-244 (950)
114 PRK14559 putative protein seri 22.0 66 0.0014 40.7 2.9 49 526-583 3-52 (645)
115 PF04037 DUF382: Domain of unk 21.9 49 0.0011 33.9 1.5 24 770-793 87-110 (129)
116 COG5406 Nucleosome binding fac 21.9 61 0.0013 40.6 2.5 22 310-331 538-559 (1001)
117 PF02724 CDC45: CDC45-like pro 21.8 81 0.0018 39.7 3.6 10 782-791 262-271 (622)
118 COG5432 RAD18 RING-finger-cont 21.8 34 0.00073 39.2 0.4 45 525-583 26-70 (391)
119 PF12678 zf-rbx1: RING-H2 zinc 21.7 43 0.00093 30.5 0.9 46 525-579 20-73 (73)
120 KOG1991 Nuclear transport rece 20.6 52 0.0011 43.0 1.7 64 624-698 885-948 (1010)
121 KOG3064 RNA-binding nuclear pr 20.3 53 0.0011 37.2 1.5 68 628-715 194-261 (303)
122 KOG1189 Global transcriptional 20.1 1.1E+02 0.0025 39.2 4.3 21 470-490 705-725 (960)
No 1
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.87 E-value=6.6e-22 Score=229.16 Aligned_cols=197 Identities=39% Similarity=0.638 Sum_probs=167.6
Q ss_pred CchhhHHHHHHhHHHHHhhhhhhhhhHHHHhhcCcccccccc---------cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001512 432 IVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEK---------LKPEKELQRATSEILRRKLKIRDLFQRLD 502 (1063)
Q Consensus 432 ~~~de~~~~r~~vr~lL~k~k~EQ~~lday~~eGWk~~srEk---------~kPekEL~rak~eI~k~K~~ire~~~~L~ 502 (1063)
...++..+...+++|++..+...+.+++.|..+||++.+.++ +.+.+++.+...+|..++..++.+.+||+
T Consensus 149 ~~~p~~~r~~n~lk~~t~~~~~~~~li~~~s~e~~~a~~~~k~~~r~~~~~~~~~~~sn~tt~~i~~r~~~~~s~~~hl~ 228 (613)
T KOG4299|consen 149 AEVPDSFRDKNSLKYLTSLQNDVQELIDISSTEGWKASSDEKPPGRPFELLIRPAKESNVTTKEILNRKLTYRSLPRHLE 228 (613)
T ss_pred ccCCCcchhhhhhhhhhccccccccccchhcccccccCCcccCcccchhhhcCcchhhccchhhhhhhhhhhhhhhhhhh
Confidence 344556677789999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhhc-CCCCCCccCCCCCccccc--ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 503 SLCA-GGFPKSLFDSEGQIDSED--IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 503 ~L~~-~~~~~S~~dsdG~~~~ed--~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
.+.. +..+......++....++ +||..|++.+.. ++|||||| |+++|||+||+|||..+.||.|. |||+.|.
T Consensus 229 t~s~~~t~~e~r~~~D~~~~~~~~~~fCsaCn~~~~F--~~~i~CD~-Cp~sFH~~CLePPl~~eniP~g~--W~C~ec~ 303 (613)
T KOG4299|consen 229 TESKEGTVEEKRRERDKNISVEDIEDFCSACNGSGLF--NDIICCDG-CPRSFHQTCLEPPLEPENIPPGS--WFCPECK 303 (613)
T ss_pred hhhhhccchhhhhhhccccccCCHHHHHHHhCCcccc--ccceeecC-CchHHHHhhcCCCCCcccCCCCc--cccCCCe
Confidence 9888 666666666666655554 499999999966 88899995 99999999999999999999998 9999999
Q ss_pred cccchhHHHH--------hhcCcccc--cc--ccccccCccccc---CCCCCCCCCCCCCCCCCCCCCC
Q 001512 580 CKVDCIDLVN--------ELQGTRLF--IT--DNWEKVFPEAAA---GHNQDPNFGLASDDSDDNEYDP 633 (1063)
Q Consensus 580 ~K~~~~~~ln--------~~~~t~~~--l~--~~~edvF~E~a~---G~~~d~e~d~~sDDseDED~dp 633 (1063)
++..+....+ -...+.|. +. ..|+.+||+... |.-.....++.+|+.++.+|++
T Consensus 304 ~k~~in~~~~t~~~~~~~~~i~t~~~~~IDs~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~ 372 (613)
T KOG4299|consen 304 IKSVINPKMETLSNRGTVVDIFTQFVSKIDSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDP 372 (613)
T ss_pred eeeecccchhhhhhccchHHHHHHHHHhhhccchhhhhCCHHHHhhccccccCCCCccccccCCcCCCh
Confidence 9999887776 44444444 44 448999998876 4444777789999999999999
No 2
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.51 E-value=7.7e-15 Score=159.43 Aligned_cols=69 Identities=26% Similarity=0.515 Sum_probs=62.6
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKL 951 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~ 951 (1063)
+...||.||.|++ .||.+||+.|..|+|.++..|.+||..|.|+++|||||||||||||||..+.....
T Consensus 156 ~~~~kR~RtayT~---~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 156 GGKSKRRRTAFTR---YQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred cCCCCCCCcccch---hhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4557889999995 79999999999999999999999999999999999999999999999876665544
No 3
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.49 E-value=2.4e-14 Score=157.58 Aligned_cols=70 Identities=27% Similarity=0.471 Sum_probs=61.6
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLA 952 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~ 952 (1063)
.+++|+.|..|++ .|+.+||+.|..++|++.++|+.||..|.||+.||||||||||+|.||+.......+
T Consensus 150 ~~~kRKrRVLFSq---AQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~~~ 219 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQ---AQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKALEA 219 (307)
T ss_pred cccccccccccch---hHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhhhc
Confidence 4456666778985 899999999999999999999999999999999999999999999999766655443
No 4
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.49 E-value=5.8e-15 Score=138.94 Aligned_cols=69 Identities=29% Similarity=0.499 Sum_probs=63.2
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKL 951 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~ 951 (1063)
.++.||-||.|+ ..||..|++.|.+.+||++.+|++||.++.|++.+|||||||||+|+||+.+.....
T Consensus 14 krKQRRIRTTFT---S~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a~~~ 82 (125)
T KOG0484|consen 14 KRKQRRIRTTFT---SAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAAIAK 82 (125)
T ss_pred HHHhhhhhhhhh---HHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 467788899998 699999999999999999999999999999999999999999999999987765543
No 5
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.46 E-value=2.4e-14 Score=158.84 Aligned_cols=68 Identities=26% Similarity=0.518 Sum_probs=62.3
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAK 950 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~ 950 (1063)
.+++|+.||.|+ ..||..||+.|++..|.+..+|.+||..|||+..||++||||||+||||+......
T Consensus 169 pkK~RksRTaFT---~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~~ 236 (309)
T KOG0488|consen 169 PKKRRKSRTAFS---DHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGGE 236 (309)
T ss_pred Ccccccchhhhh---HHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhhc
Confidence 377788899999 57999999999999999999999999999999999999999999999998776433
No 6
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.43 E-value=2.9e-13 Score=142.09 Aligned_cols=68 Identities=29% Similarity=0.492 Sum_probs=63.2
Q ss_pred CCCCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcc
Q 001512 878 TPGSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKN 948 (1063)
Q Consensus 878 s~gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~ 948 (1063)
...++.||.||.|++ .|+.+||.+|.+.+||++.+|++||.+|+|.+.+|||||+|||+|+|++....
T Consensus 32 ~~pRkqRRERTtFtr---~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTR---KQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecH---HHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 345788999999996 89999999999999999999999999999999999999999999999987764
No 7
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.39 E-value=1.1e-13 Score=152.36 Aligned_cols=67 Identities=33% Similarity=0.513 Sum_probs=60.8
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
.++.|++|..||+ .|+.+||+.|..|.|+++..|.+|++.|+|+++||+|||||||+|.||..+...
T Consensus 232 ~~~~RKKRcPYTK---~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 232 ARRGRKKRCPYTK---HQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred ccccccccCCchH---HHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence 3566778888996 699999999999999999999999999999999999999999999999775444
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.39 E-value=9.8e-14 Score=141.68 Aligned_cols=64 Identities=33% Similarity=0.529 Sum_probs=60.1
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcc
Q 001512 882 RGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKN 948 (1063)
Q Consensus 882 k~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~ 948 (1063)
+.||.||.|+ ++||..||..|+.++|....+|++||+.|+|++.||+|||||||.|.||.....
T Consensus 101 ~~kr~RT~ft---~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFT---PEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccC---HHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6788899998 799999999999999999999999999999999999999999999999976654
No 9
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.38 E-value=3.6e-13 Score=141.96 Aligned_cols=69 Identities=33% Similarity=0.526 Sum_probs=61.9
Q ss_pred CCCCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 878 TPGSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 878 s~gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
..++|-|+.||.|+ .-||+.|.+.|+.++|+...+|.+||..|||+..||||||||||.|+||..+...
T Consensus 117 gk~KK~RKPRTIYS---S~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~ 185 (245)
T KOG0850|consen 117 GKGKKVRKPRTIYS---SLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGS 185 (245)
T ss_pred CCcccccCCccccc---HHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCC
Confidence 34667778899998 4699999999999999999999999999999999999999999999999777443
No 10
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.32 E-value=4e-13 Score=140.23 Aligned_cols=70 Identities=26% Similarity=0.460 Sum_probs=62.5
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLA 952 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~ 952 (1063)
..++|+.||+|++ .|+..||..|+..+|.+..+|..||.+|.|++.||+|||||||.||||+-...-..+
T Consensus 101 ~~RKKktRTvFSr---aQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aad~ea~ 170 (268)
T KOG0485|consen 101 DDRKKKTRTVFSR---AQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAADLEAA 170 (268)
T ss_pred ccccccchhhhhH---HHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhhhhhhh
Confidence 3467788999995 899999999999999999999999999999999999999999999999766554443
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.28 E-value=1.5e-12 Score=138.70 Aligned_cols=62 Identities=31% Similarity=0.569 Sum_probs=55.9
Q ss_pred CCCC-CcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCc
Q 001512 883 GRRH-RTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSK 947 (1063)
Q Consensus 883 ~RR~-RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~ 947 (1063)
+||. ||.|+ .-|+..||+.|.+.+||+...|+.||.++.|.+.+|+|||||||+||||..+.
T Consensus 140 kRRh~RTiFT---~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 140 KRRHFRTIFT---SYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred ccccccchhh---HHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhh
Confidence 3444 78888 57999999999999999999999999999999999999999999999996554
No 12
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.23 E-value=3.7e-12 Score=132.46 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=61.0
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKL 951 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~ 951 (1063)
.+..|+.||.|+ +.||..||+-|...+|.++.+|.+++..|.||+.||+|||||||+|.||-+...-..
T Consensus 141 hk~nRkPRtPFT---tqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek 209 (246)
T KOG0492|consen 141 HKPNRKPRTPFT---TQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEK 209 (246)
T ss_pred cCCCCCCCCCCC---HHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHH
Confidence 345577788888 799999999999999999999999999999999999999999999999965544433
No 13
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.22 E-value=2.4e-12 Score=108.39 Aligned_cols=57 Identities=44% Similarity=0.737 Sum_probs=53.1
Q ss_pred CCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCC
Q 001512 884 RRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNH 943 (1063)
Q Consensus 884 RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KR 943 (1063)
||.|+.|+ +.|+..|+.+|..++||+...++.||..|||+..+|++||+|||+++||
T Consensus 1 kr~r~~~t---~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFT---KEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSS---HHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCC---HHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 45677777 7999999999999999999999999999999999999999999999875
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.19 E-value=2.8e-12 Score=137.41 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=57.0
Q ss_pred CCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 884 RRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 884 RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
-+.|.+|+ +.|.-+||+.|..++|+.+..+.+||..|||+++||||||||||+|.||..++..
T Consensus 200 DKYRvVYT---DhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 200 DKYRVVYT---DHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred cceeEEec---chhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 34577888 5799999999999999999999999999999999999999999999999766653
No 15
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.16 E-value=7.3e-11 Score=129.09 Aligned_cols=65 Identities=32% Similarity=0.577 Sum_probs=60.0
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 882 RGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 882 k~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
++||.||.|+ .+||+.||.+|++|.||+..+|++||.-.+|++.+|+|||+|||+||||+.+-..
T Consensus 111 KqrrQrthFt---Sqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 111 KQRRQRTHFT---SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhhhhhhH---HHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 6677788887 6999999999999999999999999999999999999999999999999776555
No 16
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.12 E-value=2.4e-11 Score=129.73 Aligned_cols=67 Identities=36% Similarity=0.640 Sum_probs=60.5
Q ss_pred CCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccccc
Q 001512 883 GRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLA 952 (1063)
Q Consensus 883 ~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~ 952 (1063)
-||.||.|+ .+||.+|...|+.|+|.....|.+||.+|+|.+.||+|||||+|+|.||........+
T Consensus 246 eKRPRTAFt---aeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgskn~la 312 (342)
T KOG0493|consen 246 EKRPRTAFT---AEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGSKNRLA 312 (342)
T ss_pred hcCcccccc---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCCCCchh
Confidence 378899998 6999999999999999999999999999999999999999999999999766554443
No 17
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.08 E-value=7.3e-11 Score=98.47 Aligned_cols=55 Identities=42% Similarity=0.752 Sum_probs=50.0
Q ss_pred CCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccC
Q 001512 885 RHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFN 942 (1063)
Q Consensus 885 R~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~K 942 (1063)
+.|+.|+ +.|+..|+..|..++||+...+..||..+||+..+|++||+|||++.+
T Consensus 2 k~r~~~~---~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFT---PEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 3455565 799999999999999999999999999999999999999999999864
No 18
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.06 E-value=3.2e-11 Score=130.95 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=58.4
Q ss_pred CCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCc
Q 001512 883 GRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSK 947 (1063)
Q Consensus 883 ~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~ 947 (1063)
-||.||.|++ +|+.+||+.|-+-.|.++..|.+||..|+|.+..|||||||||+|.|||...
T Consensus 181 mRRYRTAFTR---eQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 181 MRRYRTAFTR---EQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred HHHHHhhhhH---HHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 4788999996 9999999999999999999999999999999999999999999999997654
No 19
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.05 E-value=2.4e-10 Score=98.81 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=49.6
Q ss_pred CCCCcccCCCcHHHHHHHHHHhhhCCC----CCHHHHHHHHHHhCCCccceeecccccc
Q 001512 884 RRHRTSYRKLGEEVTQKLYNSFKENQY----PNRTTKESLAKELGLTFSQVRKWFENTR 938 (1063)
Q Consensus 884 RR~RT~ft~~~~~QL~~LE~~F~~n~Y----Ps~~~ReeLA~eLgLserQVqVWFQNRR 938 (1063)
||.||.|+ +.|+..|+..|+.++| |+...+++||..|||++++|+|||||.+
T Consensus 2 kR~RT~Ft---~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFT---AEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCC---HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 67899998 6999999999999999 9999999999999999999999999965
No 20
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.04 E-value=1.1e-10 Score=97.81 Aligned_cols=56 Identities=43% Similarity=0.730 Sum_probs=51.3
Q ss_pred CCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCC
Q 001512 886 HRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHP 944 (1063)
Q Consensus 886 ~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq 944 (1063)
.|+.|+ ..|+..|+.+|..++||+..++..||..+||+..+|++||+|||++.++.
T Consensus 3 ~r~~~~---~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 3 KRTRFT---PEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCcCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 345565 68999999999999999999999999999999999999999999998864
No 21
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.00 E-value=4.1e-11 Score=121.16 Aligned_cols=65 Identities=26% Similarity=0.501 Sum_probs=59.2
Q ss_pred CCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccc
Q 001512 883 GRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAK 950 (1063)
Q Consensus 883 ~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~ 950 (1063)
+++.||+|+ ..|+..|++.|+..+|.+..+|.+||..|+|++.||+.||||||+|.||..+.+..
T Consensus 100 r~K~Rtvfs---~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~p 164 (194)
T KOG0491|consen 100 RRKARTVFS---DPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQP 164 (194)
T ss_pred hhhhccccc---CccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456688998 58999999999999999999999999999999999999999999999998776653
No 22
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.00 E-value=1.6e-10 Score=121.38 Aligned_cols=52 Identities=35% Similarity=0.463 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCC
Q 001512 895 EEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSS 946 (1063)
Q Consensus 895 ~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~ 946 (1063)
.+|+..|+..|+.+.|.....+..||++|||.++||.|||||||||||.+..
T Consensus 59 ~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kql 110 (198)
T KOG0483|consen 59 SEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQL 110 (198)
T ss_pred HHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhh
Confidence 6999999999999999999999999999999999999999999999998554
No 23
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=98.92 E-value=3e-09 Score=115.25 Aligned_cols=63 Identities=25% Similarity=0.453 Sum_probs=58.0
Q ss_pred CCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcc
Q 001512 883 GRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKN 948 (1063)
Q Consensus 883 ~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~ 948 (1063)
.||+||.++ +.||+.|...|+..+.|.+.+|++|+.+.||.-+.|||||||||+|.||-++-.
T Consensus 167 nKRPRTTIt---AKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDA 229 (383)
T KOG4577|consen 167 NKRPRTTIT---AKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDA 229 (383)
T ss_pred cCCCcceee---HHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhc
Confidence 488899988 799999999999999999999999999999999999999999999999855433
No 24
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.90 E-value=8e-10 Score=112.53 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 895 EEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 895 ~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
..|+..|+..|..++||+...|..|+..|+|+++-|||||||||++.|+.....-
T Consensus 60 ~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 60 DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 5799999999999999999999999999999999999999999999998655533
No 25
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.86 E-value=5.4e-10 Score=117.23 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=60.5
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccccccC
Q 001512 882 RGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLAN 953 (1063)
Q Consensus 882 k~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~~ 953 (1063)
+++..|.+|+. .|+..|+..|+..+|+-...|.+||..||+++.||+|||||||.||||+.......+.
T Consensus 166 ~rk~srPTf~g---~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAaEmasak 234 (288)
T KOG0847|consen 166 QRKQSRPTFTG---HQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAAEMASAK 234 (288)
T ss_pred cccccCCCccc---hhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhccchhhcc
Confidence 34556777874 7999999999999999999999999999999999999999999999998776665543
No 26
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.80 E-value=1.9e-09 Score=112.85 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=59.3
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCC
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSS 946 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~ 946 (1063)
..+.||.|+.|+. .|+..|++.|...+||+...|+.||..++|++..|+|||||||+||+++.+
T Consensus 57 ~~~~rr~rt~~~~---~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTI---SQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCc---CHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566888999984 799999999999999999999999999999999999999999999999875
No 27
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=98.80 E-value=4.4e-09 Score=118.91 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=57.8
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCC
Q 001512 882 RGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSS 946 (1063)
Q Consensus 882 k~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~ 946 (1063)
++|++||+|. ......||++|..|+.|+..+...||.+|+|....|+|||.|||.|.||...
T Consensus 293 RkRKKRTSie---~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIE---VNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ccccccccee---HHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 6677889988 5899999999999999999999999999999999999999999999999765
No 28
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.76 E-value=2.4e-09 Score=115.39 Aligned_cols=50 Identities=44% Similarity=1.217 Sum_probs=44.4
Q ss_pred ccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 523 ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
++.+|.+|+... +++.||||| .|+|+||||||.|||.. .|+|. |.|..|.
T Consensus 280 eck~csicgtse--nddqllfcd-dcdrgyhmyclsppm~e--ppegs--wsc~KOG 329 (336)
T KOG1244|consen 280 ECKYCSICGTSE--NDDQLLFCD-DCDRGYHMYCLSPPMVE--PPEGS--WSCHLCL 329 (336)
T ss_pred ecceeccccCcC--CCceeEeec-ccCCceeeEecCCCcCC--CCCCc--hhHHHHH
Confidence 457799998765 889999999 79999999999999964 99999 9999994
No 29
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.56 E-value=2e-08 Score=119.47 Aligned_cols=53 Identities=34% Similarity=1.005 Sum_probs=46.2
Q ss_pred ccccccccccccCCCCCceEEecCccCcc-ccccccCCCCCCCCCCCCCCCccCCCCCccc
Q 001512 523 EDIYCAKCGSKDLSADNDIILCDGACDRG-FHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 523 ed~~C~vC~~~g~~~~~~lLlCDG~C~ra-fH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~ 582 (1063)
+...|.+|...+ ..+.|||||+ |+.+ ||+|||+|+|-. ||.+. |||++|.--.
T Consensus 214 E~~~C~IC~~~D--pEdVLLLCDs-CN~~~YH~YCLDPdl~e--iP~~e--WYC~NC~dL~ 267 (1134)
T KOG0825|consen 214 EEVKCDICTVHD--PEDVLLLCDS-CNKVYYHVYCLDPDLSE--SPVNE--WYCTNCSLLE 267 (1134)
T ss_pred ccccceeeccCC--hHHhheeecc-cccceeeccccCccccc--ccccc--eecCcchhhh
Confidence 446799999987 7789999995 9999 999999999954 99999 9999997543
No 30
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.56 E-value=7.1e-09 Score=85.87 Aligned_cols=51 Identities=51% Similarity=1.232 Sum_probs=42.6
Q ss_pred cccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcc
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K 581 (1063)
+|.+|+..+ +.+.||.|| .|.++||+.|++|++....++.+. |+|+.|..|
T Consensus 1 ~C~vC~~~~--~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~--w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQSD--DDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGD--WYCPNCRPK 51 (51)
T ss_dssp EBTTTTSSC--TTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSS--BSSHHHHHC
T ss_pred eCcCCCCcC--CCCCeEEcC-CCChhhCcccCCCChhhccCCCCc--EECcCCcCc
Confidence 589999954 788999999 699999999999998754566665 999999643
No 31
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.49 E-value=2.7e-07 Score=105.09 Aligned_cols=67 Identities=33% Similarity=0.578 Sum_probs=61.0
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
+++.+|.||+|+ +.|+..|+..|+.++||++..|+.||.+++|++.+|+|||+|||++|+|+.....
T Consensus 173 ~~~~rr~rtsft---~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~~s 239 (354)
T KOG0849|consen 173 QRGGRRNRTSFS---PSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRDCS 239 (354)
T ss_pred cccccccccccc---cchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccccc
Confidence 566677788998 5899999999999999999999999999999999999999999999999885543
No 32
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.48 E-value=8e-08 Score=123.90 Aligned_cols=87 Identities=33% Similarity=0.750 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCCccCCCCCcccccccccccccccCCCCCceEEecCccCccccccccC
Q 001512 480 LQRATSEILRRKLKIRDLFQRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLE 558 (1063)
Q Consensus 480 L~rak~eI~k~K~~ire~~~~L~~L~~-~~~~~S~~dsdG~~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~ 558 (1063)
|.+|....+. ...+.+++.+|..|.. ..|..++.. ..|.+|+..+ ..+.|++|| .|..+||++|+.
T Consensus 1073 l~~~~~~~~e-~~s~s~l~~~l~~l~~~i~w~~s~~~---------~~c~~cr~k~--~~~~m~lc~-~c~~~~h~~C~r 1139 (1404)
T KOG1245|consen 1073 LDRWEVRGIE-AKSLSQLHLLLNDLEAEIKWDRSAVN---------ALCKVCRRKK--QDEKMLLCD-ECLSGFHLFCLR 1139 (1404)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccch---------hhhhhhhhcc--cchhhhhhH-hhhhhHHHHhhh
Confidence 3344444444 5667788888888888 888888877 7899999986 778999999 599999999999
Q ss_pred CCCCCCCCCCCCCCccCCCCCcccc
Q 001512 559 PPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 559 PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
|.|.. +|.|+ |+|+.|+....
T Consensus 1140 p~~~~--~~~~d--W~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1140 PALSS--VPPGD--WMCPSCRKEHR 1160 (1404)
T ss_pred hhhcc--CCcCC--ccCCccchhhh
Confidence 99966 99999 99999987765
No 33
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.26 E-value=1.8e-06 Score=94.06 Aligned_cols=48 Identities=35% Similarity=0.562 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccC
Q 001512 895 EEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFN 942 (1063)
Q Consensus 895 ~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~K 942 (1063)
+.-...|+.+|..++||+..++.+||+.+||+..||.+||+|||.|.|
T Consensus 185 ekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 185 EKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred HhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 456778999999999999999999999999999999999999999999
No 34
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.12 E-value=1e-06 Score=110.51 Aligned_cols=75 Identities=29% Similarity=0.663 Sum_probs=57.0
Q ss_pred cccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc----hhHHHHhhcCcccc
Q 001512 522 SEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD----CIDLVNELQGTRLF 597 (1063)
Q Consensus 522 ~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~----~~~~ln~~~~t~~~ 597 (1063)
+++.+|.+|..+...+-|.||+||+ |+.++|+.|++.|. ||+|. |+|..|..... |+.+.+......-.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~-Cnl~VHq~Cygi~~----ipeg~--WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt 289 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDG-CNLAVHQECYGIPF----IPEGQ--WLCRRCLQSPQRPVRCLLCPSKGGAFKQT 289 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCC-CcchhhhhccCCCC----CCCCc--EeehhhccCcCcccceEeccCCCCcceec
Confidence 4568999999998777899999995 99999999999544 89999 99999998766 33333444333444
Q ss_pred cccccc
Q 001512 598 ITDNWE 603 (1063)
Q Consensus 598 l~~~~e 603 (1063)
....|.
T Consensus 290 ~dgrw~ 295 (1051)
T KOG0955|consen 290 DDGRWA 295 (1051)
T ss_pred cCCcee
Confidence 445553
No 35
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.10 E-value=1.2e-06 Score=95.63 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=56.5
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCC
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSS 946 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~ 946 (1063)
+..+||+||.+. ......||.+|..++.|+......||.+|.|....|+|||.|.|.|.||.+.
T Consensus 306 ~~ekKRKRTSIA---APEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~ 369 (385)
T KOG1168|consen 306 GGEKKRKRTSIA---APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKR 369 (385)
T ss_pred cccccccccccc---CcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhh
Confidence 345678888887 3568899999999999999999999999999999999999999999998443
No 36
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.02 E-value=3.9e-06 Score=85.05 Aligned_cols=29 Identities=48% Similarity=1.283 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 551 GFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 551 afH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
+||++||+|||.. ||+|+ |+||.|..+..
T Consensus 1 g~H~~CL~Ppl~~--~P~g~--W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKE--VPEGD--WICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCC--CCCCC--cCCCCCcCCCC
Confidence 6999999999965 99999 99999997655
No 38
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.99 E-value=9.2e-06 Score=87.91 Aligned_cols=67 Identities=39% Similarity=0.628 Sum_probs=56.6
Q ss_pred CCCCCcccCCCcHHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCcccccc
Q 001512 883 GRRHRTSYRKLGEEVTQKLYNSFK---ENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLA 952 (1063)
Q Consensus 883 ~RR~RT~ft~~~~~QL~~LE~~F~---~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~ 952 (1063)
.||+|..|++ .-..+|..+|. .|+||+-..+++||++++++..||..||.|.|-++||.-.+....+
T Consensus 188 arRKRRNFsK---~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k~~ee~ 257 (334)
T KOG0774|consen 188 ARRKRRNFSK---QATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGKNQEEA 257 (334)
T ss_pred HHHhhcccch---hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhhhhhhh
Confidence 3678888987 45666777764 6899999999999999999999999999999999999777665554
No 39
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.96 E-value=2.1e-06 Score=99.79 Aligned_cols=61 Identities=25% Similarity=0.519 Sum_probs=49.5
Q ss_pred cccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccchhHH
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDL 587 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~~~~~ 587 (1063)
.|.||..++....|.||.|++ |..+||+.|+.|++..+..-+-...|||..|...++.+..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~-C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r 230 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDK-CRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPR 230 (464)
T ss_pred eeeeeecCCcCccceeeeecc-cccHHHHHhccCCCCHhhccCccceEeehhhccchhhccc
Confidence 399999988888899999995 9999999999999976433333356999999887775443
No 40
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.76 E-value=2.1e-05 Score=90.93 Aligned_cols=56 Identities=36% Similarity=0.742 Sum_probs=48.7
Q ss_pred cccccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCccc
Q 001512 520 IDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 520 ~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~ 582 (1063)
.+.-+..|.+|...+..+-|.||+||| |+-+.|+.|++.+. +|+|- |+|..|+...
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdg-C~i~VHq~CYGI~f----~peG~--WlCrkCi~~~ 244 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDG-CEICVHQSCYGIQF----LPEGF--WLCRKCIYGE 244 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecC-cchhhhhhccccee----cCcch--hhhhhhcccc
Confidence 334568899999988778899999996 99999999999987 99999 9999997544
No 41
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.76 E-value=9.9e-06 Score=97.13 Aligned_cols=55 Identities=33% Similarity=0.785 Sum_probs=48.6
Q ss_pred cccccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcc
Q 001512 520 IDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (1063)
Q Consensus 520 ~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K 581 (1063)
+.+++.+|.||+.++....+.||+|| .|+-..|+.|++. ..+|.|. |+|..|..-
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd-~Cn~cVHqaCyGI----le~p~gp--WlCr~Calg 321 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCD-KCNICVHQACYGI----LEVPEGP--WLCRTCALG 321 (893)
T ss_pred eccccceeceecCCCccccceeEEec-cchhHHHHhhhce----eecCCCC--eeehhcccc
Confidence 34477899999999988999999999 6999999999999 4599998 999999754
No 42
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.74 E-value=1.1e-05 Score=88.33 Aligned_cols=46 Identities=33% Similarity=0.928 Sum_probs=39.8
Q ss_pred cccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCC-CC
Q 001512 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCP-GC 578 (1063)
Q Consensus 524 d~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~-~C 578 (1063)
+..|.+|+++. .++.||+|| .|+|+||.+|++. ..+|.|. |.|- .|
T Consensus 314 C~lC~IC~~P~--~E~E~~FCD-~CDRG~HT~CVGL----~~lP~G~--WICD~~C 360 (381)
T KOG1512|consen 314 CELCRICLGPV--IESEHLFCD-VCDRGPHTLCVGL----QDLPRGE--WICDMRC 360 (381)
T ss_pred cHhhhccCCcc--cchheeccc-cccCCCCcccccc----ccccCcc--chhhhHH
Confidence 45688999886 778999999 7999999999998 4599999 9997 45
No 43
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.60 E-value=2.7e-05 Score=86.12 Aligned_cols=47 Identities=30% Similarity=0.677 Sum_probs=38.3
Q ss_pred cccccccccccCCCCCceEEecC-ccC-ccccccccCCCCCCCCCCCCCCCccCCCCCccc
Q 001512 524 DIYCAKCGSKDLSADNDIILCDG-ACD-RGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 524 d~~C~vC~~~g~~~~~~lLlCDG-~C~-rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~ 582 (1063)
.++|. |...| .||.||+ .|+ .+||+.|++.- ..|.|. |||+.|....
T Consensus 221 yC~Cn-qvsyg-----~Mi~CDn~~C~~eWFH~~CVGL~----~~Pkgk--WyC~~C~~~~ 269 (274)
T KOG1973|consen 221 YCICN-QVSYG-----KMIGCDNPGCPIEWFHFTCVGLK----TKPKGK--WYCPRCKAEN 269 (274)
T ss_pred EEEec-ccccc-----cccccCCCCCCcceEEEeccccc----cCCCCc--ccchhhhhhh
Confidence 35666 66666 9999995 499 89999999994 489999 9999997654
No 44
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.53 E-value=2.8e-05 Score=92.74 Aligned_cols=57 Identities=33% Similarity=0.874 Sum_probs=49.2
Q ss_pred ccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccchhH
Q 001512 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCID 586 (1063)
Q Consensus 523 ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~~~~ 586 (1063)
.+.+|..|+..+ ++..+++|+ .|+-.||.||..||++. ||.|. |+|+.|...+.|-.
T Consensus 67 ~crvCe~c~~~g--D~~kf~~Ck-~cDvsyh~yc~~P~~~~--v~sg~--~~ckk~~~c~qc~~ 123 (694)
T KOG4443|consen 67 SCRVCEACGTTG--DPKKFLLCK-RCDVSYHCYCQKPPNDK--VPSGP--WLCKKCTRCRQCDS 123 (694)
T ss_pred CceeeeeccccC--Ccccccccc-cccccccccccCCcccc--ccCcc--cccHHHHhhhhccc
Confidence 457899999776 889999999 59999999999999976 99999 99999987666433
No 45
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.52 E-value=3.2e-05 Score=94.30 Aligned_cols=53 Identities=36% Similarity=0.968 Sum_probs=46.7
Q ss_pred ccccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 521 ~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
..+..+|.+|..+| .+|+|| +|..+||.+|++||+.. +|.++ |.|+.|.+...
T Consensus 44 ~~~~e~c~ic~~~g-----~~l~c~-tC~~s~h~~cl~~pl~~--~p~~~--~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 44 DAEQEACRICADGG-----ELLWCD-TCPASFHASCLGPPLTP--QPNGE--FICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhhcCCC-----cEEEec-cccHHHHHHccCCCCCc--CCccc--eeeeeeccCCC
Confidence 44557899999998 899999 79999999999999965 99998 99999976655
No 46
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.51 E-value=3.8e-05 Score=91.67 Aligned_cols=48 Identities=31% Similarity=0.881 Sum_probs=44.0
Q ss_pred ccccccccCCCCCceEEecC-ccCccccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 527 CAKCGSKDLSADNDIILCDG-ACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 527 C~vC~~~g~~~~~~lLlCDG-~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
|-||..-.-|.+|-||.||| .|..+.|+.|++. ..||.|. |||..|..
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI----vqVPtGp--WfCrKCes 56 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI----VQVPTGP--WFCRKCES 56 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhccee----EecCCCc--hhhhhhhh
Confidence 99998866699999999999 9999999999999 5699999 99999964
No 47
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.46 E-value=3.5e-05 Score=89.28 Aligned_cols=50 Identities=32% Similarity=0.905 Sum_probs=43.8
Q ss_pred cccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCC--CCccCCCC
Q 001512 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDD--EGWLCPGC 578 (1063)
Q Consensus 524 d~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd--~~WfC~~C 578 (1063)
...|.+|++.. +...++.|| +|..-||+-||.|||.. +|... .+|.|..|
T Consensus 544 ~ysCgiCkks~--dQHll~~CD-tC~lhYHlGCL~PPLTR--~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 544 NYSCGICKKST--DQHLLTQCD-TCHLHYHLGCLSPPLTR--LPKKNKNFGWQCSEC 595 (707)
T ss_pred ceeeeeeccch--hhHHHhhcc-hhhceeeccccCCcccc--CcccccCcceeeccc
Confidence 35699999874 778899999 89999999999999976 88764 69999999
No 48
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.43 E-value=2.6e-05 Score=63.13 Aligned_cols=35 Identities=43% Similarity=0.752 Sum_probs=29.5
Q ss_pred hhCCCCCHHHHHHHHHHhCCCccceeecccccccc
Q 001512 906 KENQYPNRTTKESLAKELGLTFSQVRKWFENTRWS 940 (1063)
Q Consensus 906 ~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK 940 (1063)
..+|||+..++..||.++||+..||..||-|.|.|
T Consensus 6 ~~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 6 LHNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TTSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 35799999999999999999999999999999864
No 49
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.41 E-value=9.3e-05 Score=80.37 Aligned_cols=55 Identities=33% Similarity=0.881 Sum_probs=41.2
Q ss_pred CCCCcccccccccccccccCCCCCceEEecC-ccCc-cccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 516 SEGQIDSEDIYCAKCGSKDLSADNDIILCDG-ACDR-GFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 516 sdG~~~~ed~~C~vC~~~g~~~~~~lLlCDG-~C~r-afH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
+++....+..||- |.+. .-..||-||| .|.+ +||+-|++. ...|.|- |||+.|..
T Consensus 213 s~d~se~e~lYCf-Cqqv---SyGqMVaCDn~nCkrEWFH~~CVGL----k~pPKG~--WYC~eCk~ 269 (271)
T COG5034 213 SEDNSEGEELYCF-CQQV---SYGQMVACDNANCKREWFHLECVGL----KEPPKGK--WYCPECKK 269 (271)
T ss_pred ccccccCceeEEE-eccc---ccccceecCCCCCchhheecccccc----CCCCCCc--EeCHHhHh
Confidence 3333444556663 5553 1248999999 8998 999999998 5699999 99999954
No 50
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.20 E-value=0.00057 Score=80.89 Aligned_cols=57 Identities=28% Similarity=0.488 Sum_probs=52.5
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeeccccccccc
Q 001512 882 RGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSF 941 (1063)
Q Consensus 882 k~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~ 941 (1063)
..|+.|.+|+ +.|...|...|+.++||+..+.+.|+.+|+|...-|.+||-|.|.|.
T Consensus 419 ~~KKPRlVfT---d~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 419 QTKKPRLVFT---DIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred cCCCceeeec---HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3466799998 68999999999999999999999999999999999999999988775
No 51
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.16 E-value=0.00022 Score=74.98 Aligned_cols=64 Identities=28% Similarity=0.513 Sum_probs=57.9
Q ss_pred CCCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCC
Q 001512 880 GSRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSS 946 (1063)
Q Consensus 880 gsk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~ 946 (1063)
+.+.++.|+.|. ..|+..|...|..++||....++.|+..+|++.+.|++||||+|++.++...
T Consensus 150 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFT---ENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccc---cchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 456677788887 4799999999999999999999999999999999999999999999998655
No 52
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0021 Score=79.14 Aligned_cols=41 Identities=22% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCCccCccccccccchhhhcCCC-CCCCccCCCCCCCCCccc
Q 001512 240 SPPRDANKSCQAGEISCLQQSSS-EQTPEFTPGISSHEPSVV 280 (1063)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 280 (1063)
+|-+.|.|.+..--+--.-|..| ..+|.-+.+|.||.|.--
T Consensus 884 LP~~~As~~s~fTP~~~~~~p~S~~~~p~~~~~In~~~~s~~ 925 (1516)
T KOG1832|consen 884 LPKINASKQSTFTPSFSSKQPFSHDALPQSTQRINCCSNSDP 925 (1516)
T ss_pred CCCcccccccccCccccCCCCCCCCccchhhhhhhccCCCch
Confidence 44444554433333333334444 447778888888887543
No 53
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.18 E-value=0.0036 Score=80.09 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=63.8
Q ss_pred CCCCCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccccccCCCCCCCC
Q 001512 881 SRGRRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNAKLANSEKGTCT 960 (1063)
Q Consensus 881 sk~RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~~~~~s~~~~~s 960 (1063)
-.+|+.|+.++ ..||..|...|....||.....+.|...++|..+.|++||||.|+|.|+..... ..+.+.....+
T Consensus 901 ~~r~a~~~~~~---d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~-~~~ss~~~s~s 976 (1406)
T KOG1146|consen 901 MGRRAYRTQES---DLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG-TAASSTGGSSS 976 (1406)
T ss_pred hhhhhhccchh---HHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc-ccccccccccC
Confidence 34466777777 689999999999999999999999999999999999999999999999987755 44444444444
Q ss_pred CC
Q 001512 961 PQ 962 (1063)
Q Consensus 961 p~ 962 (1063)
|.
T Consensus 977 p~ 978 (1406)
T KOG1146|consen 977 PL 978 (1406)
T ss_pred cc
Confidence 43
No 54
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.50 E-value=0.0024 Score=50.78 Aligned_cols=35 Identities=37% Similarity=1.040 Sum_probs=19.4
Q ss_pred CceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 539 NDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 539 ~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
|.||.|+ .|...+|+.|++... +|.++ .|+|..|.
T Consensus 2 n~ll~C~-~C~v~VH~~CYGv~~----~~~~~-~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCD-NCNVAVHQSCYGVSE----VPDGD-DWLCDRCE 36 (36)
T ss_dssp CEEEE-S-SS--EEEHHHHT-SS------SS------HHH-
T ss_pred CceEEeC-CCCCcCChhhCCccc----CCCCC-cEECCcCC
Confidence 5799999 599999999999954 66662 29998873
No 55
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=94.96 E-value=0.023 Score=71.87 Aligned_cols=45 Identities=29% Similarity=0.757 Sum_probs=42.0
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
+.|.+|...+ .++||. +|++.||+-|+.||+.. +|... |-|-.|.
T Consensus 345 dhcrf~~d~~-----~~lc~E-t~prvvhlEcv~hP~~~--~~s~~--~e~evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHDLG-----DLLCCE-TCPRVVHLECVFHPRFA--VPSAF--WECEVCN 389 (1414)
T ss_pred ccccccCccc-----ceeecc-cCCceEEeeecCCcccc--CCCcc--chhhhhh
Confidence 6899999988 999999 79999999999999965 99988 9999998
No 56
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.053 Score=67.44 Aligned_cols=25 Identities=4% Similarity=0.112 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCcchhhhhccCCC
Q 001512 681 EDSEDDEYNPDAPELDDKVTQESSS 705 (1063)
Q Consensus 681 ed~eDdd~dp~~~~~d~~~~~~s~s 705 (1063)
++++|+++-+.++|++.+.+++.+-
T Consensus 1457 deDGd~~d~~~D~df~~eleeGedg 1481 (1516)
T KOG1832|consen 1457 DEDGDEADILIDGDFMEELEEGEDG 1481 (1516)
T ss_pred CcccccccCCCChHHHHHHhhcCCC
Confidence 3334555555677777776666655
No 57
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=93.42 E-value=0.038 Score=57.60 Aligned_cols=56 Identities=29% Similarity=0.660 Sum_probs=43.0
Q ss_pred ccccccc-ccCCCCCceEEecCccCccccccccCCCCCCC----CCCCCCCCccCCCCCccc
Q 001512 526 YCAKCGS-KDLSADNDIILCDGACDRGFHQYCLEPPLLKE----DIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 526 ~C~vC~~-~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e----~iP~Gd~~WfC~~C~~K~ 582 (1063)
.|.+|+. ++...-..||+|-| |..+||+.||+|--..+ .|-.+++...|.+|+-..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQG-Cs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQG-CSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCc-cChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 4889975 34456679999997 99999999999976543 255666788899997543
No 58
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=92.52 E-value=0.074 Score=62.40 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=5.9
Q ss_pred ccccccCC
Q 001512 552 FHQYCLEP 559 (1063)
Q Consensus 552 fH~~CL~P 559 (1063)
||.|+-..
T Consensus 2 FHEFaSs~ 9 (458)
T PF10446_consen 2 FHEFASSE 9 (458)
T ss_pred ccccccCc
Confidence 78887665
No 59
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=92.27 E-value=0.14 Score=60.30 Aligned_cols=6 Identities=50% Similarity=1.160 Sum_probs=2.6
Q ss_pred CCCCCC
Q 001512 800 DDESWS 805 (1063)
Q Consensus 800 dDEDws 805 (1063)
|+.-|.
T Consensus 255 d~~~~~ 260 (458)
T PF10446_consen 255 DDHVWL 260 (458)
T ss_pred chhhhc
Confidence 334453
No 60
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=91.74 E-value=0.35 Score=59.65 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=47.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCCCccc
Q 001512 898 TQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPSSKNA 949 (1063)
Q Consensus 898 L~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~~~~~ 949 (1063)
+..|..+|..|.+|+..+...+|.+.||..+.|++||+++++......+...
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~rsps 619 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVERSPS 619 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhccCcc
Confidence 7789999999999999999999999999999999999999999887665444
No 61
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.09 E-value=0.22 Score=62.89 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.4
Q ss_pred HHHHHh
Q 001512 497 LFQRLD 502 (1063)
Q Consensus 497 ~~~~L~ 502 (1063)
+|+.|-
T Consensus 533 ~f~~L~ 538 (784)
T PF04931_consen 533 AFELLL 538 (784)
T ss_pred HHHHHH
Confidence 344433
No 62
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=91.08 E-value=0.13 Score=60.93 Aligned_cols=57 Identities=26% Similarity=0.640 Sum_probs=46.5
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCC-----CCccCCCCCcccc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDD-----EGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd-----~~WfC~~C~~K~~ 583 (1063)
.+|-||-...+.+.+.||-|| .|.-..|..|++-- +...||.|. +.|||-.|.+-..
T Consensus 120 ~iCcVClg~rs~da~ei~qCd-~CGi~VHEgCYGv~-dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCD-KCGINVHEGCYGVL-DNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred eEEEEeecCccccccceeecc-ccCceecccccccc-cccccCCCCccCCCCchhhhhHhcCCC
Confidence 389999987777889999999 69999999999984 445677664 5699999976543
No 63
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=90.64 E-value=0.19 Score=57.15 Aligned_cols=51 Identities=33% Similarity=0.455 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhh---hCCCCCHHHHHHHHHHhCCCccceeecccccccccCCCC
Q 001512 895 EEVTQKLYNSFK---ENQYPNRTTKESLAKELGLTFSQVRKWFENTRWSFNHPS 945 (1063)
Q Consensus 895 ~~QL~~LE~~F~---~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRaK~KRq~ 945 (1063)
...+.+|+.++. ..+||+...+..||.++||+..||.+||-|.|-|..+.-
T Consensus 248 ~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~ 301 (342)
T KOG0773|consen 248 KEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPM 301 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCch
Confidence 567777776633 368999999999999999999999999999998876643
No 64
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=88.07 E-value=0.16 Score=44.43 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeeccccccc
Q 001512 897 VTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTRW 939 (1063)
Q Consensus 897 QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRRa 939 (1063)
-+..|+.+|...+++.-.....|..+.+|+..||+.||--|+.
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~ 51 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQ 51 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS-
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhcc
Confidence 3567999999999999999999999999999999999976543
No 65
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=86.19 E-value=0.52 Score=60.60 Aligned_cols=50 Identities=40% Similarity=1.045 Sum_probs=42.2
Q ss_pred cccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcc
Q 001512 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (1063)
Q Consensus 524 d~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K 581 (1063)
...|..|.++.. ...+ +|++ |...||.+|+.||+.. +|.|+ |.|+.|..-
T Consensus 155 ~~~~~~~~k~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKE--EKLL-LCDS-CDDSYHTYCLRPPLTR--VPDGD--WRCPKCIPT 204 (904)
T ss_pred chhhhccccCCC--ccce-eccc-ccCcccccccCCCCCc--CCcCc--ccCCccccc
Confidence 367999999863 3444 9995 9999999999999965 99999 999999876
No 66
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=84.25 E-value=0.28 Score=59.96 Aligned_cols=56 Identities=23% Similarity=0.709 Sum_probs=43.9
Q ss_pred cccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 524 DIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 524 d~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
..+|.+|...|.-..+.|+.|- .|...||.+|+..-+.. .+-.+. |-|+.|+..-.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~-~c~~~yH~~cvt~~~~~-~~l~~g--WrC~~crvCe~ 73 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACS-DCGQKYHPYCVTSWAQH-AVLSGG--WRCPSCRVCEA 73 (694)
T ss_pred hhhhhhhccccccccCcchhhh-hhcccCCcchhhHHHhH-HHhcCC--cccCCceeeee
Confidence 4679999998877788899999 69999999999976543 222333 99999986544
No 67
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=2.1 Score=49.63 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=33.8
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
+.|.+|-... ..++.+.. = .|.-.||..|.+|-|.. -+ -+||-|.+
T Consensus 230 ~~CaIClEdY-~~GdklRi-L-PC~H~FH~~CIDpWL~~----~r---~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY-EKGDKLRI-L-PCSHKFHVNCIDPWLTQ----TR---TFCPVCKR 275 (348)
T ss_pred ceEEEeeccc-ccCCeeeE-e-cCCCchhhccchhhHhh----cC---ccCCCCCC
Confidence 6899999876 33444433 3 59999999999999864 11 48999954
No 68
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.13 E-value=0.88 Score=55.64 Aligned_cols=48 Identities=31% Similarity=0.742 Sum_probs=42.0
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K 581 (1063)
..|..|..+| .+++|+ .|+.+||+.|-++++. ...+.+. |-|..|-..
T Consensus 48 ts~~~~~~~g-----n~~~~~-~~~~s~h~~~~~~~~s-p~~~~~~--~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICKSGG-----NLLCCD-HCPASFHLECDKPPLS-PDLKGSE--INCSRCPKG 95 (613)
T ss_pred hhcchhhhcC-----Cccccc-cCccccchhccCcccC-ccccccc--ccccCCCcc
Confidence 5699999998 899999 7999999999999998 4566666 999999763
No 69
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=80.31 E-value=0.27 Score=62.85 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=43.1
Q ss_pred ccccccccccCCCCCceEEecCccCccccc-cccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQ-YCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~-~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
..|.+|+..+ .+|||+|+|+.+||+ .||+--.-.-.++.+= |+|+.|+.++-
T Consensus 429 rrl~Ie~~de-----t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i--~~~~ee~~rqM 481 (1414)
T KOG1473|consen 429 RRLRIEGMDE-----TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGI--WERREEIIRQM 481 (1414)
T ss_pred eeeEEecCCC-----cEEEEecCcHHHHHHHHHhchHHHHHhhccch--hhhHHHHHHhc
Confidence 5699999766 899999999999998 9999544434688877 99999987665
No 70
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=78.62 E-value=0.4 Score=59.74 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=45.5
Q ss_pred ccccccccccccccCCCCCceEEecCccCccccccccCC-CCCCCCCCCCCCCccCCCCCcccc
Q 001512 521 DSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEP-PLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 521 ~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~P-PL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
.-.++.|..|.+.. ..++|+ .|-|.||..|+.| |++. .+-|- |-|+.|..+..
T Consensus 503 ~~~d~~~~~~~~~l-----~~l~~p-~~lrr~k~d~l~~~P~Kt--e~i~~--~~~~~~Q~~~y 556 (696)
T KOG0383|consen 503 EFHDISCEEQIKKL-----HLLLCP-HMLRRLKLDVLKPMPLKT--ELIGR--VELSPCQKKYY 556 (696)
T ss_pred hcchhhHHHHHHhh-----ccccCc-hhhhhhhhhhccCCCccc--eeEEE--EecCHHHHHHH
Confidence 34568899999987 899999 8999999999999 8876 77787 99999976554
No 71
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.57 E-value=1.1 Score=39.21 Aligned_cols=33 Identities=33% Similarity=0.841 Sum_probs=29.0
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCC
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEP 559 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~P 559 (1063)
..|.+|+..= .+.+++|.|. .|...||..|+..
T Consensus 6 ~~C~~Cg~~~-~~~dDiVvCp-~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKF-KDGDDIVVCP-ECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcc-cCCCCEEECC-CCCCcccHHHHhh
Confidence 6799999874 5678999999 8999999999976
No 72
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.14 E-value=5.7 Score=44.50 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=6.1
Q ss_pred CccCCCCCc
Q 001512 572 GWLCPGCDC 580 (1063)
Q Consensus 572 ~WfC~~C~~ 580 (1063)
...||.|--
T Consensus 209 ~~PCPKCg~ 217 (314)
T PF06524_consen 209 PIPCPKCGY 217 (314)
T ss_pred CCCCCCCCC
Confidence 367888843
No 73
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=73.24 E-value=11 Score=42.46 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCCceEEecCccCcc
Q 001512 523 EDIYCAKCGSKDLSADNDIILCDGACDRG 551 (1063)
Q Consensus 523 ed~~C~vC~~~g~~~~~~lLlCDG~C~ra 551 (1063)
-+.+|..|.++--..+..|+-|- .|...
T Consensus 124 ~da~C~EC~R~vw~hGGrif~Cs-fC~~f 151 (314)
T PF06524_consen 124 QDAVCIECERGVWDHGGRIFKCS-FCDNF 151 (314)
T ss_pred CCcEeeeeecccccCCCeEEEee-cCCCe
Confidence 34678888886544567899898 78764
No 74
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.65 E-value=3.2 Score=50.35 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=43.4
Q ss_pred CcccccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 519 QIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 519 ~~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
.....+.+|.-|...| ..|.|+ -|-|.||..|+.|-. .++.....|.|+.|..
T Consensus 55 ~~~N~d~~cfechlpg-----~vl~c~-vc~Rs~h~~c~sp~~---q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 55 PSSNIDPFCFECHLPG-----AVLKCI-VCHRSFHENCQSPDP---QKRNYSVPSDKPQPYS 107 (588)
T ss_pred cccCCCcccccccCCc-----ceeeee-hhhccccccccCcch---hhccccccccCCcccc
Confidence 3445568999999988 899999 699999999999964 3566656799999964
No 75
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=68.46 E-value=6.6 Score=47.07 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001512 622 ASDDSDDNEYDPDGSATDEQDEGDESSSDGSSSDDSDF 659 (1063)
Q Consensus 622 ~sDDseDED~dpe~~e~de~~~~ees~see~~sd~s~~ 659 (1063)
+.|+++-+|.+|+++++++.+.++++++++..+|+++.
T Consensus 230 d~de~d~~d~~p~~~e~~e~g~eE~egsd~~~~deae~ 267 (620)
T COG4547 230 DADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEA 267 (620)
T ss_pred CccccccccCCCCCCcccccccccccccccCccchhhc
Confidence 34555556677777777777777776666655555543
No 76
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=64.84 E-value=3.2 Score=42.47 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=24.4
Q ss_pred cccccccccchhhhhhHHHhhCCCCCCC
Q 001512 771 PVYGKRSSERLDYKKLYDETYGNVPYDS 798 (1063)
Q Consensus 771 ~vsgrRqv~~lDYkKLyDE~yG~~~sds 798 (1063)
.-+||++|+++.|+++||.+||.+....
T Consensus 100 ~~VGRNgVLPQ~FDQFfetayg~~~~~~ 127 (143)
T PF12045_consen 100 SNVGRNGVLPQGFDQFFETAYGNAENSS 127 (143)
T ss_pred cccccCCcCccccchhcccccCCCCCCC
Confidence 3689999999999999999999975543
No 77
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.82 E-value=2.5 Score=44.92 Aligned_cols=34 Identities=21% Similarity=0.565 Sum_probs=19.6
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
..|..|.... -..+||..|-+=.... -.|..|..
T Consensus 68 kkC~kC~~r~-------------Vk~aYH~~Cr~CA~e~---------~vCAKC~k 101 (227)
T KOG3241|consen 68 KKCQKCTKRN-------------VKQAYHKLCRGCAKEQ---------KVCAKCCK 101 (227)
T ss_pred HHHHHHHHHH-------------HHHHHHHhcccHHHHH---------HHHHHHhc
Confidence 4577777653 4556666665554332 45666644
No 78
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=63.16 E-value=3.5 Score=39.17 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=34.5
Q ss_pred cccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCccc
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~ 582 (1063)
.|..|+.+| ++-.|+++. |...||+.|+.--|..+ ... =.||.|+..-
T Consensus 34 ~Cp~Ck~Pg--d~Cplv~g~--C~H~FH~hCI~kWl~~~---~~~--~~CPmCR~~w 81 (85)
T PF12861_consen 34 CCPDCKFPG--DDCPLVWGK--CSHNFHMHCILKWLSTQ---SSK--GQCPMCRQPW 81 (85)
T ss_pred CCCCccCCC--CCCceeecc--CccHHHHHHHHHHHccc---cCC--CCCCCcCCee
Confidence 366677766 445566665 99999999999988752 223 5899997643
No 79
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=61.28 E-value=5.3 Score=48.04 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred ccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 523 EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 523 ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
+...|.+|...-+.+++.++.|+ .|.++||+.|..|.... .+. |+|..|+..+.
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~-r~~~~~~q~~~i~~~~~----~~~--~~~~~c~~~~~ 135 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICG-RCKSGYHQGCNIPRFPS----LDI--GESTECVFPIF 135 (464)
T ss_pred cccCCcccccccccCchhhhhhh-hhccCcccccCccCcCc----CCc--ccccccccccc
Confidence 33569999987777888999999 89999999999997632 344 88888865443
No 80
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=59.51 E-value=8.9 Score=32.96 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCCCcccCCCcHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCCccceeecccccc
Q 001512 884 RRHRTSYRKLGEEVTQKLYNSFKENQYPNRTTKESLAKELGLTFSQVRKWFENTR 938 (1063)
Q Consensus 884 RR~RT~ft~~~~~QL~~LE~~F~~n~YPs~~~ReeLA~eLgLserQVqVWFQNRR 938 (1063)
||+|..++ -.+-..+-..++... ....||..+|++..+|..|..|+.
T Consensus 1 krkR~~LT---l~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLT---LEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS-----HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCCccCC---HHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 35566666 355555555566665 578899999999999999999853
No 81
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=55.52 E-value=31 Score=41.22 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=18.5
Q ss_pred cccccccchhhhhhHHHhhCCC
Q 001512 773 YGKRSSERLDYKKLYDETYGNV 794 (1063)
Q Consensus 773 sgrRqv~~lDYkKLyDE~yG~~ 794 (1063)
..++++-.-..++|+...||..
T Consensus 314 ~rKNRrGQrAR~~iwEkKyG~~ 335 (432)
T PF09073_consen 314 KRKNRRGQRARRAIWEKKYGKN 335 (432)
T ss_pred CCcchhhHHHHHHHHHHhhccc
Confidence 5677777888999999999984
No 82
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=54.59 E-value=18 Score=46.67 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.7
Q ss_pred CCHHHHHH
Q 001512 475 KPEKELQR 482 (1063)
Q Consensus 475 kPekEL~r 482 (1063)
+.-+|+++
T Consensus 180 kskkEvm~ 187 (840)
T PF04147_consen 180 KSKKEVME 187 (840)
T ss_pred cCHHHHHH
Confidence 34455553
No 83
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=54.25 E-value=8.9 Score=41.29 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=33.5
Q ss_pred cccccccccc---CCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCccc
Q 001512 525 IYCAKCGSKD---LSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKV 582 (1063)
Q Consensus 525 ~~C~vC~~~g---~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~ 582 (1063)
-+|.+|...+ .++.+..+-|. .|...||..|+.. =.||.|...+
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~-~C~~v~H~~C~~~-------------~~CpkC~R~~ 199 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCP-KCKSVFHKSCFRK-------------KSCPKCARRQ 199 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCC-cCccccchhhcCC-------------CCCCCcHhHh
Confidence 4699998755 34556788999 6999999999884 2399996543
No 84
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=53.57 E-value=14 Score=46.92 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.5
Q ss_pred chhhhhhHHH
Q 001512 780 RLDYKKLYDE 789 (1063)
Q Consensus 780 ~lDYkKLyDE 789 (1063)
..+|..|-|.
T Consensus 969 aeey~hllD~ 978 (988)
T KOG2038|consen 969 AEEYAHLLDQ 978 (988)
T ss_pred HHHHHHHhhc
Confidence 4556666553
No 85
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=51.80 E-value=13 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 001512 476 PEKELQRATSEILRRKLKIRDLFQR 500 (1063)
Q Consensus 476 PekEL~rak~eI~k~K~~ire~~~~ 500 (1063)
...+|...+.+.-+ +.++-..|.+
T Consensus 705 D~del~~EQ~Er~r-r~~ln~~Fks 728 (960)
T KOG1189|consen 705 DRDELEQEQEERDR-RAKLNMAFKS 728 (960)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444444443332 3334444443
No 86
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=48.02 E-value=26 Score=45.93 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=7.9
Q ss_pred ccccc-cccCCcchhhh
Q 001512 34 KFCAE-CIHSEPLESKS 49 (1063)
Q Consensus 34 ~~~~~-~~~~~~~~~~~ 49 (1063)
.|-|| |.+|..-..++
T Consensus 131 rl~aEL~~vGVf~~ke~ 147 (1128)
T KOG2051|consen 131 RLFAELYLVGVFDDKEG 147 (1128)
T ss_pred HHHhhhhhheeeeccch
Confidence 34444 66666544433
No 87
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.86 E-value=13 Score=47.02 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.5
Q ss_pred HhhcCCCCC
Q 001512 313 IEQLKQPEV 321 (1063)
Q Consensus 313 ~~~~~~~~~ 321 (1063)
|.+||-|.-
T Consensus 347 VNKlGDpqn 355 (988)
T KOG2038|consen 347 VNKLGDPQN 355 (988)
T ss_pred HHhcCCcch
Confidence 455555444
No 88
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=44.03 E-value=19 Score=47.46 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=12.1
Q ss_pred CCCccccccccccccccccccccCCC
Q 001512 213 LPSDGVEENLQTISEDLTKVCPVEPS 238 (1063)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1063)
.++-.++-|.-+++|+++...-|-++
T Consensus 1007 ~pnlF~eRnis~ppe~iamadaapae 1032 (3015)
T KOG0943|consen 1007 EPNLFAERNISAPPEAIAMADAAPAE 1032 (3015)
T ss_pred ccccccccccCCCHHHHhhhhccccc
Confidence 34444444555555555554433333
No 89
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=43.15 E-value=14 Score=34.12 Aligned_cols=30 Identities=33% Similarity=0.776 Sum_probs=25.2
Q ss_pred ccccccccc-cCCCCCceEEecC-ccCccccccccCC
Q 001512 525 IYCAKCGSK-DLSADNDIILCDG-ACDRGFHQYCLEP 559 (1063)
Q Consensus 525 ~~C~vC~~~-g~~~~~~lLlCDG-~C~rafH~~CL~P 559 (1063)
..|.+|++. | ..|-|.- .|.+.||..|..-
T Consensus 37 ~~C~~C~~~~G-----a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGG-----ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCC-----eEEEEeCCCCCcEEChHHHcc
Confidence 469999998 7 7888874 5999999999765
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=41.98 E-value=3.7 Score=33.27 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=30.0
Q ss_pred cccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
.|.+|...- ..++.++... |.-.||..|+..-|.. . ..||.|+
T Consensus 2 ~C~IC~~~~-~~~~~~~~l~--C~H~fh~~Ci~~~~~~------~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEF-EDGEKVVKLP--CGHVFHRSCIKEWLKR------N--NSCPVCR 44 (44)
T ss_dssp CETTTTCBH-HTTSCEEEET--TSEEEEHHHHHHHHHH------S--SB-TTTH
T ss_pred CCcCCChhh-cCCCeEEEcc--CCCeeCHHHHHHHHHh------C--CcCCccC
Confidence 588998764 2344555555 9999999999997643 1 4788884
No 91
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.53 E-value=9.5 Score=43.05 Aligned_cols=58 Identities=29% Similarity=0.577 Sum_probs=34.7
Q ss_pred ccccccccccccc-C-CCCCceE---EecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccchhH
Q 001512 522 SEDIYCAKCGSKD-L-SADNDII---LCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCID 586 (1063)
Q Consensus 522 ~ed~~C~vC~~~g-~-~~~~~lL---lCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~~~~ 586 (1063)
.++.+|+||++.= . .+++-+| .== .|+..||.+|..--. |- |. .-+||.|..|.+...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWc----iv-GK-kqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWC----IV-GK-KQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhhe----ee-cC-CCCCchHHHHhhHhh
Confidence 3457899999852 0 1111010 011 499999999987643 21 11 269999988777433
No 92
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=39.48 E-value=7 Score=44.27 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCceEEecCccCccccccccCCCCCC-CCCCCCCCCccCCCCCcccchhHH
Q 001512 538 DNDIILCDGACDRGFHQYCLEPPLLK-EDIPPDDEGWLCPGCDCKVDCIDL 587 (1063)
Q Consensus 538 ~~~lLlCDG~C~rafH~~CL~PPL~~-e~iP~Gd~~WfC~~C~~K~~~~~~ 587 (1063)
.+.||+|- .|...||.+|+.-+..- .-+-. ..|.|..|.-..-|...
T Consensus 276 ~~S~I~C~-~C~~~~HP~Ci~M~~elv~~~KT--Y~W~C~~C~lC~IC~~P 323 (381)
T KOG1512|consen 276 RNSWIVCK-PCATRPHPYCVAMIPELVGQYKT--YFWKCSSCELCRICLGP 323 (381)
T ss_pred hccceeec-ccccCCCCcchhcCHHHHhHHhh--cchhhcccHhhhccCCc
Confidence 35799999 89999999999987532 01222 24999999766555443
No 93
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=39.47 E-value=25 Score=37.47 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=18.7
Q ss_pred CCCceEEecCccCccccccccCCCC
Q 001512 537 ADNDIILCDGACDRGFHQYCLEPPL 561 (1063)
Q Consensus 537 ~~~~lLlCDG~C~rafH~~CL~PPL 561 (1063)
.+|.|+=|. .|.|+||+.-|-|+-
T Consensus 120 ~~nVLFRC~-~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 120 PDNVLFRCT-SCHRAWHFEHLPPPS 143 (175)
T ss_pred hhheEEecC-CccceeehhhCCCCc
Confidence 345667799 699999988887764
No 94
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=38.28 E-value=31 Score=44.64 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=4.1
Q ss_pred cCccccccccC
Q 001512 548 CDRGFHQYCLE 558 (1063)
Q Consensus 548 C~rafH~~CL~ 558 (1063)
.+......-.+
T Consensus 251 YD~~vrel~fd 261 (840)
T PF04147_consen 251 YDKLVRELAFD 261 (840)
T ss_pred HHHHHHHhccc
Confidence 33333333333
No 95
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=36.00 E-value=26 Score=32.80 Aligned_cols=30 Identities=20% Similarity=0.596 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccC
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLE 558 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~ 558 (1063)
..|.+|++.= .. ..+.-- -|+..||..|+.
T Consensus 79 ~~C~vC~k~l--~~-~~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPL--GN-SVFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcC--CC-ceEEEe-CCCeEEeccccc
Confidence 6799999963 22 333333 377999999974
No 96
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=34.06 E-value=49 Score=40.83 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=15.0
Q ss_pred cchhHHHHhhcCcccc---ccccc---cccCcccc
Q 001512 582 VDCIDLVNELQGTRLF---ITDNW---EKVFPEAA 610 (1063)
Q Consensus 582 ~~~~~~ln~~~~t~~~---l~~~~---edvF~E~a 610 (1063)
.++...++...+..+. +.-.| .+.|...+
T Consensus 169 ~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta 203 (678)
T KOG0127|consen 169 KDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTA 203 (678)
T ss_pred HHHHHHHHhccCceecCceeEEeeecccccccccc
Confidence 3455555555555443 44555 36666544
No 97
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=32.42 E-value=22 Score=34.09 Aligned_cols=30 Identities=30% Similarity=0.833 Sum_probs=24.4
Q ss_pred ccccccccccCCCCCceEEecCc--cCccccccccCC
Q 001512 525 IYCAKCGSKDLSADNDIILCDGA--CDRGFHQYCLEP 559 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~--C~rafH~~CL~P 559 (1063)
..|.+|+... ..+|-|. . |...||..|..-
T Consensus 56 ~~C~iC~~~~----G~~i~C~-~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 56 LKCSICGKSG----GACIKCS-HPGCSTAFHPTCARK 87 (110)
T ss_pred CcCcCCCCCC----ceeEEcC-CCCCCcCCCHHHHHH
Confidence 5799999952 2688888 6 999999999754
No 98
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=9.3 Score=44.96 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=38.4
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCc--cCCCCCcccchhHHH
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGW--LCPGCDCKVDCIDLV 588 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~W--fC~~C~~K~~~~~~l 588 (1063)
..|.+|..+- ....++---. +|...||..||.--+. .-| | -||.|..+..+....
T Consensus 5 A~C~Ic~d~~-p~~~~l~~i~-~cGhifh~~cl~qwfe--~~P-----s~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGR-PNDHELGPIG-TCGHIFHTTCLTQWFE--GDP-----SNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCC-cccccccccc-chhhHHHHHHHHHHHc--cCC-----ccCCCCceeecccceeee
Confidence 4699995543 4444554455 7999999999998763 355 6 699998666654444
No 99
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=31.38 E-value=13 Score=31.65 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=27.9
Q ss_pred cccccccccCCCCCceE-EecCccC---ccccccccCCCCCCCCCCCCCCCccCCCC
Q 001512 526 YCAKCGSKDLSADNDII-LCDGACD---RGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lL-lCDG~C~---rafH~~CL~PPL~~e~iP~Gd~~WfC~~C 578 (1063)
+|.+|...+ .+++.++ -|. |. ..+|..||..-|.. .+. ..|+.|
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~--C~G~~~~vH~~Cl~~W~~~----~~~--~~C~iC 48 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCR--CKGSLKYVHQECLERWINE----SGN--KTCEIC 48 (49)
T ss_pred CccCCCCCC-CCCCeeEeccc--cCCchhHHHHHHHHHHHHH----cCC--CcCCCC
Confidence 488888733 3334444 355 55 68999999997643 223 578777
No 100
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=48 Score=44.12 Aligned_cols=37 Identities=27% Similarity=0.215 Sum_probs=20.2
Q ss_pred ccccccccccCCCCCCCccCccccccccc-hhhhcCCCCCCCccCCC
Q 001512 226 SEDLTKVCPVEPSQSPPRDANKSCQAGEI-SCLQQSSSEQTPEFTPG 271 (1063)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 271 (1063)
.|-|.-+-|||-.++ --+|| -++-||---||+|-+--
T Consensus 1322 seLLk~T~Lfe~PNa---------R~EHilLFLaqTV~RQTrEh~~s 1359 (3015)
T KOG0943|consen 1322 SELLKATNLFELPNA---------RGEHILLFLAQTVARQTREHCQS 1359 (3015)
T ss_pred HHHHhhccceeccCC---------CCceehhHHHHHHHHHHHHHhcc
Confidence 344455666665554 22333 35667777777765543
No 101
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=29.63 E-value=46 Score=43.97 Aligned_cols=56 Identities=30% Similarity=0.679 Sum_probs=44.0
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCc---ccchhH
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC---KVDCID 586 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~---K~~~~~ 586 (1063)
..|.+|+....+..+.++.|| .|.+.-|..|+++- ..+ ....|+|..|.. +..+..
T Consensus 574 ~~c~~~~~~~~~~~n~~~~~~-~~~~~~~s~~~g~~----~~~-~~~~~~~~~~~~~~~~r~~~l 632 (1005)
T KOG1080|consen 574 ERCAVCRDDEDWEKNVSIICD-RCTRSVHSECYGNL----KSY-DGTSWVCDSCETLDIKRSCCL 632 (1005)
T ss_pred ccccccccccccccceeeeec-cccccCCCcccccC----CCC-CCCcchhhccccccCCchhhh
Confidence 569999998888889999999 79999999999882 122 223699999987 554433
No 102
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.00 E-value=81 Score=40.83 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhc-CCCCCCccCCCCCcccccccccccccccCCCCCceEEecCccCccccccccCCCCCCC
Q 001512 486 EILRRKLKIRDLFQRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKE 564 (1063)
Q Consensus 486 eI~k~K~~ire~~~~L~~L~~-~~~~~S~~dsdG~~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e 564 (1063)
.|..++..+.++.+.|..|-. ..+-+ -..|..|...= +=.+|.= .|...||+.|+.-
T Consensus 813 ~Ie~yk~~i~e~r~~l~~lr~sa~i~q------------~skCs~C~~~L---dlP~VhF--~CgHsyHqhC~e~----- 870 (933)
T KOG2114|consen 813 AIEVYKKDIEEKRQELETLRTSAQIFQ------------VSKCSACEGTL---DLPFVHF--LCGHSYHQHCLED----- 870 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceee------------eeeecccCCcc---ccceeee--ecccHHHHHhhcc-----
Confidence 344445555555555655544 11111 14699998752 2233433 4889999999982
Q ss_pred CCCCCCCCccCCCCCcc
Q 001512 565 DIPPDDEGWLCPGCDCK 581 (1063)
Q Consensus 565 ~iP~Gd~~WfC~~C~~K 581 (1063)
++ --||.|...
T Consensus 871 ----~~--~~CP~C~~e 881 (933)
T KOG2114|consen 871 ----KE--DKCPKCLPE 881 (933)
T ss_pred ----Cc--ccCCccchh
Confidence 23 679999873
No 103
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.22 E-value=53 Score=36.42 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCC
Q 001512 624 DDSDDNEYDPDG 635 (1063)
Q Consensus 624 DDseDED~dpe~ 635 (1063)
+|++|+||..+.
T Consensus 37 Eee~D~ef~~~~ 48 (240)
T PF05764_consen 37 EEEDDEEFESEE 48 (240)
T ss_pred ccCCCccccCCC
Confidence 344555665543
No 104
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.58 E-value=43 Score=37.10 Aligned_cols=8 Identities=38% Similarity=0.742 Sum_probs=3.9
Q ss_pred CCCCCChH
Q 001512 708 SDFTSDSE 715 (1063)
Q Consensus 708 sd~~sDse 715 (1063)
|||+++++
T Consensus 58 sdf~~se~ 65 (240)
T PF05764_consen 58 SDFDDSED 65 (240)
T ss_pred cccCcccc
Confidence 55554443
No 105
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.38 E-value=32 Score=26.19 Aligned_cols=28 Identities=29% Similarity=0.708 Sum_probs=11.8
Q ss_pred cccccccccCCCCCceEEecCccCccccccc
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYC 556 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH~~C 556 (1063)
.|.+|+... .......|. .|+=..|+.|
T Consensus 2 ~C~~C~~~~--~~~~~Y~C~-~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPI--DGGWFYRCS-ECDFDLHEEC 29 (30)
T ss_dssp --TTTS------S--EEE-T-TT-----HHH
T ss_pred cCCcCCCcC--CCCceEECc-cCCCccChhc
Confidence 489999876 224678899 7999999988
No 106
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.36 E-value=42 Score=44.39 Aligned_cols=51 Identities=24% Similarity=0.571 Sum_probs=36.5
Q ss_pred ccccccccc--cCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 525 IYCAKCGSK--DLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~--g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
-+|.+|+.. -..+++-.|-|. .|.=..=--|+.- +.-+|. -.||.|..+.+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~-eC~FPVCrpCYEY-----Er~eG~--q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACD-VCAFPVCRPCYEY-----ERKDGN--QSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEec-cCCCccccchhhh-----hhhcCC--ccCCccCCchh
Confidence 589999983 245667788899 7965555567754 356777 99999965554
No 107
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=24.55 E-value=33 Score=31.13 Aligned_cols=57 Identities=25% Similarity=0.546 Sum_probs=21.8
Q ss_pred ccccccccccC-CCCCceEEecC-ccCccccccccCCCCCCCCCCCCC-----CCccCCCCCcccc
Q 001512 525 IYCAKCGSKDL-SADNDIILCDG-ACDRGFHQYCLEPPLLKEDIPPDD-----EGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~g~-~~~~~lLlCDG-~C~rafH~~CL~PPL~~e~iP~Gd-----~~WfC~~C~~K~~ 583 (1063)
..|.+|...-. .+....+.|+- .|...||+.||.--|.. .+.+. ..+-||.|..+..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~--~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS--LEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH--HHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH--cccCCeeecccccCCcCCCCeee
Confidence 45899987532 12223577872 59999999999765542 11110 1256999976543
No 108
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.55 E-value=35 Score=42.83 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=6.1
Q ss_pred ccchhhhhhHHHh
Q 001512 778 SERLDYKKLYDET 790 (1063)
Q Consensus 778 v~~lDYkKLyDE~ 790 (1063)
.....|.+++...
T Consensus 254 i~~~~Y~~~~~~L 266 (622)
T PF02724_consen 254 ISSERYDRYVPLL 266 (622)
T ss_pred cchhhHHHHHHHH
Confidence 3344555554443
No 109
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=23.34 E-value=55 Score=41.05 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCccccccccCCCCCCCCccCCCCCchh
Q 001512 66 PNSEKLQAFCGDVPDSSFTDHLAPPSED 93 (1063)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1063)
.++++|--||-||.-.-|....+|--|-
T Consensus 123 s~~k~VG~f~kD~~qgkfi~ew~~i~e~ 150 (1001)
T COG5406 123 SENKIVGDFCKDVLQGKFINEWDSIFEP 150 (1001)
T ss_pred cCCcccCccchhhhhcccccccchhhhh
Confidence 4568899999999998888777776554
No 110
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=22.92 E-value=88 Score=37.53 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=8.5
Q ss_pred CCCCHHHHHHHHHHh
Q 001512 909 QYPNRTTKESLAKEL 923 (1063)
Q Consensus 909 ~YPs~~~ReeLA~eL 923 (1063)
-+|++..+...-.++
T Consensus 405 LHPSWeAkkk~Ke~~ 419 (432)
T PF09073_consen 405 LHPSWEAKKKAKEKQ 419 (432)
T ss_pred CCccHHHHHHHHHHh
Confidence 467777665543333
No 111
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=22.36 E-value=2.6e+02 Score=34.84 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHHHHHHHH-Hhhhhc--CCCCCCccCCCCCcccccccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCC
Q 001512 492 LKIRDLFQR-LDSLCA--GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPP 568 (1063)
Q Consensus 492 ~~ire~~~~-L~~L~~--~~~~~S~~dsdG~~~~ed~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~ 568 (1063)
..+.+++.+ |..||. ...|-...... ...|..|.-.- .+..|..=| .| | +|-+.|||. |+.
T Consensus 310 g~i~Ev~s~V~k~L~~rKit~Pg~F~s~~------g~~av~CS~KA--neG~LYPLe-kg---F-lFl~KP~l~---I~f 373 (615)
T KOG0526|consen 310 GPIYEVFSIVMKALCGRKITVPGEFLSHS------GTAAVKCSFKA--NEGLLYPLE-KG---F-LFLPKPPLY---IRF 373 (615)
T ss_pred ccHHHHHHHHHHHHhCceeeccccccccC------CCceeeeeecc--cCceEeecc-cc---e-EeecCCceE---eec
Confidence 345556544 567777 33444443333 36788888763 344444444 34 3 677788875 666
Q ss_pred CCCCccCCCCCc
Q 001512 569 DDEGWLCPGCDC 580 (1063)
Q Consensus 569 Gd~~WfC~~C~~ 580 (1063)
++ --+|.+-+.
T Consensus 374 ~E-IS~V~fsR~ 384 (615)
T KOG0526|consen 374 EE-ISSVNFSRS 384 (615)
T ss_pred cc-eeeEEEEec
Confidence 64 345555543
No 112
>PLN02400 cellulose synthase
Probab=22.05 E-value=58 Score=43.22 Aligned_cols=51 Identities=20% Similarity=0.522 Sum_probs=35.9
Q ss_pred ccccccccc--cCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 525 IYCAKCGSK--DLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~--g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
-+|.+|+.. -..+++-.|.|. .|.=..=--|+.- +.-+|. -.||.|..+.+
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~-eCaFPVCRpCYEY-----ERkeGn--q~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACN-ECAFPVCRPCYEY-----ERKDGT--QCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEc-cCCCccccchhhe-----ecccCC--ccCcccCCccc
Confidence 589999983 245667888999 7955444456644 355677 99999965554
No 113
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=22.00 E-value=23 Score=45.41 Aligned_cols=53 Identities=23% Similarity=0.629 Sum_probs=37.0
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC 580 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~ 580 (1063)
..|.||-..- .....|.-|- .|...||++|..-.-.. .--.++.+|-||.|..
T Consensus 192 yeCmIC~e~I-~~t~~~WSC~-sCYhVFHl~CI~~WArs-~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 192 YECMICTERI-KRTAPVWSCK-SCYHVFHLNCIKKWARS-SEKTGQDGWRCPACQS 244 (950)
T ss_pred eEEEEeeeec-cccCCceecc-hhhhhhhHHHHHHHHHH-hhhccCccccCCcccc
Confidence 4599998753 3345688899 69999999997654332 1223345699999973
No 114
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.96 E-value=66 Score=40.69 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=32.6
Q ss_pred cccccccccCCCCCceEEecCccCcccc-ccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 526 YCAKCGSKDLSADNDIILCDGACDRGFH-QYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 526 ~C~vC~~~g~~~~~~lLlCDG~C~rafH-~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
+|..|+.. .++...+|. .|...+- ..|..-. ..+|.+. -||+.|-.+..
T Consensus 3 ~Cp~Cg~~---n~~~akFC~-~CG~~l~~~~Cp~CG---~~~~~~~--~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFE---NPNNNRFCQ-KCGTSLTHKPCPQCG---TEVPVDE--AHCPNCGAETG 52 (645)
T ss_pred cCCCCCCc---CCCCCcccc-ccCCCCCCCcCCCCC---CCCCccc--ccccccCCccc
Confidence 57777764 344566788 5876543 5565554 2478887 89999966554
No 115
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=21.93 E-value=49 Score=33.86 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.6
Q ss_pred ccccccccccchhhhhhHHHhhCC
Q 001512 770 APVYGKRSSERLDYKKLYDETYGN 793 (1063)
Q Consensus 770 ~~vsgrRqv~~lDYkKLyDE~yG~ 793 (1063)
+-|..|=++..+||.+|||.+|--
T Consensus 87 ervqPKmGkldIDYq~LhdAFFk~ 110 (129)
T PF04037_consen 87 ERVQPKMGKLDIDYQKLHDAFFKF 110 (129)
T ss_pred HHhCcccCcccccHHHHHHHHHhc
Confidence 356777788899999999988753
No 116
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=21.92 E-value=61 Score=40.63 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=11.1
Q ss_pred HHHHhhcCCCCCCcccCcCccc
Q 001512 310 KSSIEQLKQPEVPITIPSTKTS 331 (1063)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~ 331 (1063)
.|.|--|+--.+|.-|.+.++.
T Consensus 538 qsIilPI~grpVPFHiss~Kna 559 (1001)
T COG5406 538 QSIILPIGGRPVPFHISSIKNA 559 (1001)
T ss_pred ceEEEeecCcccceeehhhccc
Confidence 3334444444456666655543
No 117
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=21.80 E-value=81 Score=39.68 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=4.9
Q ss_pred hhhhhHHHhh
Q 001512 782 DYKKLYDETY 791 (1063)
Q Consensus 782 DYkKLyDE~y 791 (1063)
.|..|.+|..
T Consensus 262 ~~~~L~~eV~ 271 (622)
T PF02724_consen 262 YVPLLQDEVS 271 (622)
T ss_pred HHHHHHHHHH
Confidence 3555555543
No 118
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=21.77 E-value=34 Score=39.21 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=31.1
Q ss_pred ccccccccccCCCCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCCcccc
Q 001512 525 IYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD 583 (1063)
Q Consensus 525 ~~C~vC~~~g~~~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~~K~~ 583 (1063)
..|.+|...= -+-|-..|...|--+|..--|.. .-|||.|+....
T Consensus 26 lrC~IC~~~i------~ip~~TtCgHtFCslCIR~hL~~--------qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRI------SIPCETTCGHTFCSLCIRRHLGT--------QPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhhee------ecceecccccchhHHHHHHHhcC--------CCCCccccccHH
Confidence 5699998752 33454478888878887776642 269999987544
No 119
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=21.71 E-value=43 Score=30.53 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=28.0
Q ss_pred ccccccccccCC--------CCCceEEecCccCccccccccCCCCCCCCCCCCCCCccCCCCC
Q 001512 525 IYCAKCGSKDLS--------ADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCD 579 (1063)
Q Consensus 525 ~~C~vC~~~g~~--------~~~~lLlCDG~C~rafH~~CL~PPL~~e~iP~Gd~~WfC~~C~ 579 (1063)
+.|.+|...-.. .+.-.+.-. .|.-.||..|+..-|.. ...||.|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~--------~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQ--------NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTT--------SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhc--------CCcCCCCC
Confidence 348887764200 112333334 69999999999887643 15899885
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=52 Score=42.99 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCcchhh
Q 001512 624 DDSDDNEYDPDGSATDEQDEGDESSSDGSSSDDSDFTSTSDEVEAPADDKTYLGLSSEDSEDDEYNPDAPELDDK 698 (1063)
Q Consensus 624 DDseDED~dpe~~e~de~~~~ees~see~~sd~s~~~s~sd~~~~~~~~~~~~gl~Sed~eDdd~dp~~~~~d~~ 698 (1063)
.++++++.+++..+.+++-.++++|.++++.|--+..-.....++.. .+.|||+|.++-+.+++
T Consensus 885 ~ee~~~e~~~~~~~~~e~~~~d~dD~d~~d~d~~~~~~~~~~~~~~~-----------~~~ddd~d~~~~~~~ed 948 (1010)
T KOG1991|consen 885 EEEDSEEGEEEDDDEEEDFIDDEDDIDEDDQDYLDEYGELALEKEDS-----------LDDDDDFDEDELDLEED 948 (1010)
T ss_pred hccccccccCCCCcchhhccCccccccccchhHHHhhcccccccccc-----------ccccccccchhcccccc
No 121
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=20.35 E-value=53 Score=37.19 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 001512 628 DNEYDPDGSATDEQDEGDESSSDGSSSDDSDFTSTSDEVEAPADDKTYLGLSSEDSEDDEYNPDAPELDDKVTQESSSSG 707 (1063)
Q Consensus 628 DED~dpe~~e~de~~~~ees~see~~sd~s~~~s~sd~~~~~~~~~~~~gl~Sed~eDdd~dp~~~~~d~~~~~~s~s~e 707 (1063)
++|...++++.+++++++-.+.+++..-+.+.+ +|+||.+.+.+..+.+....+.+++++
T Consensus 194 e~d~~de~ee~~~~~~~e~E~v~~D~e~e~~e~--------------------~D~E~~~~~~~~~~~~~s~~d~d~e~e 253 (303)
T KOG3064|consen 194 EEDDKDENEEEEEDEDAELEEVEGDGELEAEET--------------------DDSEDWDGDDDSDESDDSDEDSDSEDE 253 (303)
T ss_pred hhcccccccccccchhhhhhhccCCcccccccc--------------------cchhhhcccchhhhhhhcccccccccC
Q ss_pred CCCCCChH
Q 001512 708 SDFTSDSE 715 (1063)
Q Consensus 708 sd~~sDse 715 (1063)
+|.+++.|
T Consensus 254 sd~de~Ee 261 (303)
T KOG3064|consen 254 SDSDEIEE 261 (303)
T ss_pred CchhhHHH
No 122
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=20.15 E-value=1.1e+02 Score=39.22 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=9.6
Q ss_pred cccccCCHHHHHHHHHHHHHH
Q 001512 470 SVEKLKPEKELQRATSEILRR 490 (1063)
Q Consensus 470 srEk~kPekEL~rak~eI~k~ 490 (1063)
.+..+.-+++-.+.+.+|..-
T Consensus 705 D~del~~EQ~Er~rr~~ln~~ 725 (960)
T KOG1189|consen 705 DRDELEQEQEERDRRAKLNMA 725 (960)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 444444454444444444443
Done!