BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001514
(1063 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z160|COG1_MOUSE Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus
GN=Cog1 PE=2 SV=3
Length = 980
Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 245/1000 (24%), Positives = 424/1000 (42%), Gaps = 150/1000 (15%)
Query: 22 DAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESI 81
D +LF T EIR +E + +I+ K+EELRQ+VG RYRDLI++AD+I M+ E +
Sbjct: 17 DPNALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQMRRCAEGL 76
Query: 82 SSNISSIHSHILSLSLSAETAT-TPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDE 140
+ + + L + A P+ P P K Y +A ++K L++ PE IW ++
Sbjct: 77 VDAVQATDQYCARLRQAGSVAPRVPRAPQPQPPSEKFYSMAAQIKLLLEIPEKIWSAMEA 136
Query: 141 SMFLEAATRYVRAKHVQYI--LLDVNKEVDHL--NFPLLQHQCQIVESFKVQISQRGRER 196
S L+A Y+ H+ + L N + FP+L Q F+ I +
Sbjct: 137 SQHLQATQLYLLCCHLHSLLQLDSSNSRYSPILSRFPILIRQVAAASHFRSTILHESKML 196
Query: 197 LLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVF 256
L + QA A+AL ++ +++E P Q L FL RK I QTL N + + + +
Sbjct: 197 LKCQAVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATI-QTL-LNQSHHGAGIKAQI 254
Query: 257 CQVMKVIQITVAQVGELFLQ----VLNDMPLFYKVILAS-------PPASQLFGGIPNPD 305
C +++++ T+ Q LF VL D L ++ ++ P + G +
Sbjct: 255 CSLVELLATTLNQAHALFYTLPEGVLPDPSLPCGLLFSTLETVTRQHPTGKGIGALQG-- 312
Query: 306 EEVRLWKLFRD----------KLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLI 355
E++L FR L ++ + ++Y+ T W+ C +I N I L+
Sbjct: 313 -EMKLCSWFRHLPTSIIEFQPTLRTLAHPISQEYLKDTLQKWIDMCNEDIKNGIGN--LL 369
Query: 356 DTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLW 415
+ + K GLA IR+ + D L + S W + + +L+ W
Sbjct: 370 MYVKSMK--GLA--GIRDAI---------WDLLSNESASH---SWEVVCQRLLEKPLLFW 413
Query: 416 DEIFEDAFVQRMKMIIDSGFEDLSRVVN--VANSIQVIGGDN--YGELVDFQAYLNRPST 471
+++ + F+ R++ + GFE +S + +++Q + +N + V F+ ++
Sbjct: 414 EDLMQQLFLDRLQTLTREGFESISNSSKELLVSALQELETNNSTSNKHVHFEQNMS---- 469
Query: 472 GGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLN-AYFGLE-VSRIRDAVDSCCQNV- 528
+W PN LP D + + N A F +S A+ C QN
Sbjct: 470 -FFLWSESPND-------------LPSDAAWVSVANRAQFASSGLSMKAQAISPCVQNFC 515
Query: 529 ----------LEDLLSFLESPKAPLRLKDLAPYLQNKC-----YESMSTILMELKRE--- 570
L+DLL++L S PL LKD P Q K Y T+ L+ +
Sbjct: 516 SALDSKLKVKLDDLLAYLPSSDTPL-LKDTTPTHQPKNSAFDRYADAGTVQDMLRTQSVA 574
Query: 571 -LDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAV 629
+ ++ I++ ++ ++ + HS + +L F A+ +
Sbjct: 575 CIKSVVGCIQAELCTIEEVTREQKDVL----------HSTKLHAVL----FMAR--LCQS 618
Query: 630 FDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTT 689
+L P L+Q V ++ P ++ ++ A L + + K L ++
Sbjct: 619 LGELCPHLKQC-VVGQCGGSEKPAREARALKKQGKGRAQDVLPAQAQWQGVKEVLLQQS- 676
Query: 690 RDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMK 749
+ A+ +W T L L +R L D S + W+E +++E S K
Sbjct: 677 ----VMAYRVWSTALVKFLICGFTRSLLLRDAGSVLATATNWDELEIQEETESGSSVTSK 732
Query: 750 ISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAH 809
I LP+ PS Y+ SFL C+E++R+GGH L K LQ+ + +VI Y
Sbjct: 733 IRLPTQPSWYVQSFLFSLCQEVNRVGGHALPKVTLQEMLKTCMAQVIAAYEQL-----TE 787
Query: 810 ESQVSEKG--------VLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQT 861
E+Q+ ++G LQ+L+DLR+ VL S++ E K+ ++K R ++
Sbjct: 788 ENQIKKEGAFPMTQNRALQLLYDLRYLTMVL----SSKGEEVKSGRSKADSRMEK----- 838
Query: 862 KSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTV 921
M E ++ LI DP D + P+L N + R +VLFG +
Sbjct: 839 ---MTERLEALI-------DPFDLDVFTPHLNSNLNRLVQRTSVLFGLVTGTENQFASRS 888
Query: 922 QKLPTNSESNIMR-CSTVPRFKYLPISAPAL-SSRATTKT 959
+ NI+ S+ RF LP+S + +RAT+++
Sbjct: 889 STFNSQEPHNILPLASSQIRFGLLPLSMTSTRKARATSRS 928
>sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens
GN=COG1 PE=1 SV=1
Length = 980
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 233/1010 (23%), Positives = 410/1010 (40%), Gaps = 171/1010 (16%)
Query: 22 DAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESI 81
D +LF T EIR +E + +I+ K+EELRQ+VG RYRDLI++AD+I M+ +
Sbjct: 17 DPAALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQMRRCAVGL 76
Query: 82 SSNISSIHSHILSL--SLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLD 139
+ + + L + SA P++ K Y +A ++K L++ PE IW ++
Sbjct: 77 VDAVKATDQYCARLRQAGSAAPRPPRAQQPQQPSQEKFYSMAAQIKLLLEIPEKIWSSME 136
Query: 140 ESMFLEAATRYVRAKHVQYILLDVNKEVDH----LNFPLLQHQCQIVESFKVQISQRGRE 195
S L A Y+ H+ +L + + FP+L Q F+ I +
Sbjct: 137 ASQCLHATQLYLLCCHLHSLLQLDSSSSRYSPVLSRFPILIRQVAAASHFRSTILHESKM 196
Query: 196 RLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSV 255
L G+ QA A+AL ++ +++E P Q L FL RK I + L N + + +
Sbjct: 197 LLKCQGVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATIQKLL--NQPHHGAGIKAQ 254
Query: 256 FCQVMKVIQITVAQVGELFLQ----VLND--MP---LF--YKVILASPPASQLFGGIPNP 304
C +++++ T+ Q LF +L D +P LF + I PA + G +
Sbjct: 255 ICSLVELLATTLKQAHALFYTLPEGLLPDPALPCGLLFSTLETITGQHPAGKGTGVL--- 311
Query: 305 DEEVRLWKLFRD----------KLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFL 354
EE++L F+ L ++ + ++Y+ T W+ C +I N I L
Sbjct: 312 QEEMKLCSWFKHLPASIVEFQPTLRTLAHPISQEYLKDTLQKWIHMCNEDIKNGITN--L 369
Query: 355 IDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDL 414
+ + + K GLA IR+ M W + + W + +L+
Sbjct: 370 LMYVKSMK--GLA--GIRDAM-----------W-ELLTNESTNHSWDVLCRRLLEKPLLF 413
Query: 415 WDEIFEDAFVQRMKMIIDSGFEDLSRVVN--VANSIQVIGGDNYGELVDFQAYLNRPSTG 472
W+++ + F+ R++ + GF+ +S + +++Q + + + +
Sbjct: 414 WEDMMQQLFLDRLQTLTKEGFDSISSSSKELLVSALQELESSTSNSPSNKHIHFEY-NMS 472
Query: 473 GGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLN----AYFGLEVSRIRDAVDSCCQNV 528
+W PN LP D + + N A GL + A+ C QN
Sbjct: 473 LFLWSESPND-------------LPSDAAWVSVANRGQFASSGLSMK--AQAISPCVQNF 517
Query: 529 -----------LEDLLSFLESPKAPLRLKDLAP-------------------YLQNKCYE 558
L+DLL++L S + L KD++P L+ +
Sbjct: 518 CSALDSKLKVKLDDLLAYLPSDDSSLP-KDVSPTQAKSSAFDRYADAGTVQEMLRTQSVA 576
Query: 559 SMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSP 618
+ I+ ++ EL ++ ++ +++ +A + LF+ RL
Sbjct: 577 CIKHIVDCIRAELQSIEEGVQGQQDALNSAKL-HSVLFMARL------------------ 617
Query: 619 RFWAKETVAAVFDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESE 678
+L P L+Q + S ++ P ++ R+Q T ++ T
Sbjct: 618 --------CQSLGELCPHLKQC-ILGKSESSEKPAREF-RALRKQGKVKTQEIIPTQA-- 665
Query: 679 SPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQ 738
K +E+ + + +W + + L ++ L DD S + W+E +++
Sbjct: 666 --KWQEVKEVLLQQSVMGYQVWSSAVVKVLIHGFTQSLLLDDAGSVLATATSWDELEIQE 723
Query: 739 EQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGI 798
E S KI LP+ PS Y+ SFL C+EI+R+GGH L K LQ+ + +V+
Sbjct: 724 EAESGSSVTSKIRLPAQPSWYVQSFLFSLCQEINRVGGHALPKVTLQEMLKSCMVQVVAA 783
Query: 799 YRNFLSTIEAHESQVSEKG--------VLQVLFDLRFSADVLSG-GDSNRNESSKNSKAK 849
Y + E Q+ ++G LQ+L+DLR+ VL+ GD +
Sbjct: 784 YEKL-----SEEKQIKKEGAFPVTQNRALQLLYDLRYLNIVLTAKGDEVK---------- 828
Query: 850 FSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGF 909
S R K D K + +H++ LI DP D + P+L N + R +VLFG
Sbjct: 829 -SGRSKPDSRIEK--VTDHLEALI-------DPFDLDVFTPHLNSNLHRLVQRTSVLFGL 878
Query: 910 FVQLNRMYTDTVQKLPTNSESNIMR-CSTVPRFKYLPISAPALSSRATTK 958
+ NI+ S+ RF LP+S + +T+
Sbjct: 879 VTGTENQLAPRSSTFNSQEPHNILPLASSQIRFGLLPLSMTSTRKAKSTR 928
>sp|Q54ZB3|COG1_DICDI Conserved oligomeric Golgi complex subunit 1 OS=Dictyostelium
discoideum GN=cog1 PE=3 SV=1
Length = 1449
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 14/235 (5%)
Query: 21 GDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCES 80
D + LF +++ +E + +I+ + +LR L+G +YRDL++ +D+IV MK S E
Sbjct: 118 SDVKILFERNTPEQMKQMEFKKRSEIEDMKSQLRNLIGNKYRDLVEGSDAIVKMKKSTEL 177
Query: 81 ISSNISSIHSHILSLSLSAE------TATTPKLANPNPNRLKIYGIACRVKYLVDTPENI 134
IS N+S + S + S + KL + KI + K+L+D PE I
Sbjct: 178 ISDNLSLMQSELKQFSEKRNHFRKGVSQDNLKLNKEKEIQKKISIFSKYCKFLIDIPEVI 237
Query: 135 WGCLDESMFLEAATRYVRAKHV-QYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRG 193
W LD + + E ++++K++ I + N E+ L L + Q + + I G
Sbjct: 238 WRSLDSNDYFEVCVFFLKSKYLYSKITNENNLEIKRLLSKLTIIEKQWISMKQFPIKTIG 297
Query: 194 RERLLDN-------GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTL 241
+L N G I+ Y +L+ + + ++ ++ FL +R++ + ++
Sbjct: 298 YSKLFLNESTSRIIGTPIEKYIGSLSTLILFEKKSIKETFNEFLLSRRSVLFNSI 352
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 117/316 (37%), Gaps = 98/316 (31%)
Query: 693 CIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMK--- 749
CI +W+ + S IL +DL D + + ++ WE+ +++ E + + +
Sbjct: 985 CI----VWVNEFVGDYSQILKQDLFNHDW-NDSDRIKTWEKHIIQIESNGHNHNNDANDG 1039
Query: 750 -----------------ISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLL 792
I +P S +I S+L EI + + +DK+IL+ +
Sbjct: 1040 GGDDDATVNGVNEHSTIIYIPYQTSPFITSYLMSISLEISKFSLNTIDKNILRFIIESIT 1099
Query: 793 EKVIGIYRNFLSTIEAHES---------------QVSEKGVLQVLFDLRFSADVLSGGDS 837
+ I + LST + + +++G +Q+L DL++ +L G +
Sbjct: 1100 LNLFNIVNDLLSTSSTSTTASTSNLTSNNTTTTIKFNKEGYIQLLIDLKYIGFILFGREL 1159
Query: 838 NRNESSKNSKAKFS--------FRRKQDQSQ----TKSHMREHV---------------- 869
N + S K + S F++ + Q TK+++ E++
Sbjct: 1160 NSSSSKKPTSQPTSNVIIKDSIFKKAKSHYQSIISTKNNVDENIELQKQQQQQQQQQQQQ 1219
Query: 870 -----------------------DGLINRFSQ-------RLDPIDWLTYEPYLRENEKQA 899
+ ++ F+Q LDPID Y Y+ + Q
Sbjct: 1220 QQQQQQQQQQQQQQQQQQQEQLSNNIVYTFNQIIELVEKNLDPIDLAFYNSYIVKFIDQT 1279
Query: 900 YVRHAVLFGFFVQLNR 915
Y + LFG FV L++
Sbjct: 1280 YSKTLTLFGNFVYLHK 1295
>sp|Q9VGC3|COG1_DROME Conserved oligomeric Golgi complex subunit 1 OS=Drosophila
melanogaster GN=CG4848 PE=1 SV=1
Length = 886
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 11/231 (4%)
Query: 22 DAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESI 81
+ ++LF +SEI V + ++ K+EELR VG RYRDL+ +AD+I M++S ++
Sbjct: 9 NVDTLFEQHSVSEIDEVHKKIQSVVENKREELRTHVGERYRDLLQAADTIAAMQTSAGTL 68
Query: 82 SSNISSIHSHILSL---------SLSAETATTPKLANPNPNR--LKIYGIACRVKYLVDT 130
+ + ++ SL S + +A L N + YG ++K L
Sbjct: 69 MEQVRHVQANCRSLNEQQLLGFQSTANASAKDAALKERNAGKKLQTYYGTMAQIKLLTAL 128
Query: 131 PENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQIS 190
PE IW LD F A ++ ++H+ L + P+ + Q +I+ F V I
Sbjct: 129 PELIWTHLDNDRFYAATELFIFSRHISTGLQLDGQSALMQKLPVARKQWEILRPFHVTIK 188
Query: 191 QRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTL 241
Q L L + D L ++ ++D+ D VL FL R + L L
Sbjct: 189 QAILTALEREELLQEMTVDCLQSLLLLDKSDLSTVLKSFLNLRSSAFLNCL 239
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 731 WEETVVKQEQSDESQS-EMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSS 789
W+ ++Q D+ QS + I +PS P L + ++L + + ++ + L +LQ F
Sbjct: 627 WQTLTLEQRDEDQEQSVQSTIRIPSQPRLSLQTYLHQLIQALNSVVPQTLPPKVLQAFIQ 686
Query: 790 RLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNR 839
RL+ K++ Y A ++ S+ LQ+ FDL+F V + R
Sbjct: 687 RLIGKLLCHYEGL---AHAECTKASQNIALQLYFDLKFLERVFAISREER 733
>sp|A6QQ47|VPS51_BOVIN Vacuolar protein sorting-associated protein 51 homolog OS=Bos
taurus GN=VPS51 PE=2 SV=1
Length = 781
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 18 GGYGDAE----SLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVL 73
G + D E L R P++++ + E +QI+ +++ LV Y I + D+I
Sbjct: 64 GAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRK 123
Query: 74 MKSSCESISSNISSIHSHILSLS-LSAETATTPKLANPNPNRLKIYGIAC---RVKYLVD 129
MK+ + + + +++ ++ SA + T L +P+ K+ G+ +++ L +
Sbjct: 124 MKNDFRKMEDEMDRLATNMAVITDFSARISAT--LQDPHERITKLAGVHALLRKLQILFE 181
Query: 130 TPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHL-NFPLLQHQCQIVESFKVQ 188
P + C++ + +A RA+ V ++ HL +F +Q CQ++ + +
Sbjct: 182 LPSRLTKCVELGAYGQAVRYQGRARAVL-------QQYQHLPSFRAIQDDCQVITA---R 231
Query: 189 ISQRGRERLLDNGLGIQAYADALAAVAVIDE 219
++Q+ R+R + G G A+ + + + E
Sbjct: 232 LAQQLRQRFREGGSGAPEQAECVELLLALGE 262
>sp|Q3UVL4|VPS51_MOUSE Vacuolar protein sorting-associated protein 51 homolog OS=Mus
musculus GN=Vps51 PE=2 SV=2
Length = 782
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 26/210 (12%)
Query: 3 LSSGEDRVAAHGGG---------GGGYGDAE----SLFRTKPISEIRNVELTTKKQIQQK 49
LS GE VA H G G + D E L R P++++ + E +QI+
Sbjct: 43 LSEGE--VAGHPAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRAL 100
Query: 50 QEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLS-LSAETATTPKLA 108
+++ LV Y I + D+I MK+ + + + +++ ++ SA + T +
Sbjct: 101 DSDMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVITNFSARISATLQDR 160
Query: 109 NPNPNRLK-IYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEV 167
+ +L ++ + ++++L + P + C++ + +A RA+ V ++
Sbjct: 161 HERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRARAVL-------QQY 213
Query: 168 DHL-NFPLLQHQCQIVES-FKVQISQRGRE 195
HL +F +Q CQ++ + Q+ QR RE
Sbjct: 214 QHLPSFRAIQDDCQVITARLAQQLRQRFRE 243
>sp|Q9UID3|VPS51_HUMAN Vacuolar protein sorting-associated protein 51 homolog OS=Homo
sapiens GN=VPS51 PE=1 SV=2
Length = 782
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 24 ESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISS 83
+ L R P++++ + E +QI+ +++ LV Y I + D+I MK+ +
Sbjct: 75 DKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKMED 134
Query: 84 NISSIHSHILSLS-LSAETATTPKLANPNPNRLK-IYGIACRVKYLVDTPENIWGCLDES 141
+ + +++ ++ SA + T + + +L ++ + ++++L + P + C++
Sbjct: 135 EMDRLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFLFELPSRLTKCVELG 194
Query: 142 MFLEAATRYVRAKHVQYILLDVNKEVDHL-NFPLLQHQCQIVESFKVQISQRGRERLLDN 200
+ +A RA+ V ++ HL +F +Q CQ++ + +++Q+ R+R +
Sbjct: 195 AYGQAVRYQGRAQAVL-------QQYQHLPSFRAIQDDCQVITA---RLAQQLRQRFREG 244
Query: 201 GLGIQAYADALAAVAVIDE 219
G G A+ + + + E
Sbjct: 245 GSGAPEQAECVELLLALGE 263
>sp|Q155U0|VPS51_DANRE Vacuolar protein sorting-associated protein 51 homolog OS=Danio
rerio GN=vps51 PE=2 SV=1
Length = 827
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 104/215 (48%), Gaps = 14/215 (6%)
Query: 32 ISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSH 91
++E+ + E KQI+ +++ LV Y I + D+I MK+ + + + + ++
Sbjct: 66 LTELMDHESCMVKQIRSLDSDMQTLVYENYNKFISATDTIRKMKNDFKKMEDEMDCLSAN 125
Query: 92 ILSLS-LSAETATTPKLANPNPNRLK-IYGIACRVKYLVDTPENIWGCLDESMFLEAATR 149
+ +++ SA + T + + +L ++ + ++++L + P + CL+ + +A +
Sbjct: 126 MAAITEFSARISGTLQDQHAQITKLSGVHTLLRKLQFLFELPARLNKCLELQAYAQAVSS 185
Query: 150 YVRAKHVQYILLDVNKEVDHL-NFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYA 208
+ RA+ V ++ H+ +F +Q C ++ Q++Q+ R++ D G + +
Sbjct: 186 HRRARCVL-------QQYSHMPSFRGIQDDCHVIME---QLAQQLRQKFRDGGSSAKDLS 235
Query: 209 DALAAVAVIDELDPEQVLGLFLETRKTWILQTLGG 243
+ + + +DE E++ FL ++ + L G
Sbjct: 236 ECVELLLQLDE-PAEELCDKFLSHAQSRLEADLQG 269
>sp|Q505L3|VPS51_XENLA Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus
laevis GN=vps51 PE=2 SV=1
Length = 757
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 26 LFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNI 85
L + +S++ +VE +QI+ E++ LV Y I + D+I MK+ + + +
Sbjct: 55 LRKESSLSQLMDVEADMVRQIRSLDSEMQTLVYENYNKFISATDTIRKMKNDFKKMEDEM 114
Query: 86 SSIHSHILSLS-LSAETATTPKLANPNPNRLK-IYGIACRVKYLVDTPENIWGCLDESMF 143
+ S++ ++ SA ++T ++++ +L ++ + ++++L + P + C++ +
Sbjct: 115 DGLASNMAVITEFSARISSTLQVSHQQITKLSGVHTLLRKLQFLFELPARLKKCIELGAY 174
Query: 144 LEAATRYVRAKHVQYILLDVNKEVDHL-NFPLLQHQCQ-IVESFKVQISQRGRE 195
+A + + +A+ V + + H+ +F +Q CQ I+ + QR R+
Sbjct: 175 GQAVSYHSKARSVLH-------QYQHMPSFHGIQTDCQAIMAGLADTLRQRFRD 221
>sp|Q4V9Y0|VPS51_XENTR Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus
tropicalis GN=vps51 PE=2 SV=1
Length = 760
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 26 LFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNI 85
L + +S++ +VE +QI+ E++ LV Y I + D+I MK+ + + +
Sbjct: 58 LRKESSLSQLMDVEADMVRQIRSLDSEMQTLVYENYNKFISATDTIRKMKNDFKKMEDEM 117
Query: 86 SSIHSHILSLS-LSAETATTPKLANPNPNRLK-IYGIACRVKYLVDTPENIWGCLDESMF 143
+ +++ ++ SA ++T + + +L ++ + ++++L + P + C++ +
Sbjct: 118 DGLATNMAVITEFSARISSTLQERHQQITKLSGVHTLLRKLQFLFELPARLKKCIELGAY 177
Query: 144 LEAATRYVRAKHVQYILLDVNKEVDHL-NFPLLQHQCQ-IVESFKVQISQRGRE 195
+A + + +A+ V + + H+ +F +Q CQ I+ + QR R+
Sbjct: 178 AQAVSYHSKARSVLH-------QYQHMPSFHGIQTDCQAIMAGLADTLRQRFRD 224
>sp|D3ZWT9|CLC6A_RAT C-type lectin domain family 6 member A OS=Rattus norvegicus
GN=CLEC6A PE=3 SV=1
Length = 209
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 68 ADSIVLMKSSCESISSNISSIHSHILSLSL-SAETATTPKLANPNPNRLKIYGIACRVKY 126
A +V + + E + +S +H++ SL+ S T + KL PN K +G +C Y
Sbjct: 35 ASCMVTYQFTMEKPNRRLSELHTYHSSLTCCSKGTMVSEKLWGCCPNHWKSFGSSC---Y 91
Query: 127 LVDTPENIWGCLDESMFLEAATRYVRAKHVQ--YILLDVNKEVDHL 170
L+ T EN W +++ A V + YI+ +N+ + +
Sbjct: 92 LISTKENFWSISEQNYIHMGAHLVVINTETEQNYIIHQLNESLSYF 137
>sp|Q8NCN2|ZBT34_HUMAN Zinc finger and BTB domain-containing protein 34 OS=Homo sapiens
GN=ZBTB34 PE=2 SV=4
Length = 500
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 506 LNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILM 565
L+ GL +S I++ NV E LLSF + + L+LKD+ +L + M ++
Sbjct: 63 LSTMSGLSISVIKNP------NVFEQLLSFCYTGRMSLQLKDVVSFLTAASFLQMQCVID 116
Query: 566 ELKRELDNLYAAIESG 581
+ + L+++++ I G
Sbjct: 117 KCTQILESIHSKISVG 132
>sp|Q9UTL1|COG1_SCHPO Conserved oligomeric Golgi complex subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cog1 PE=3 SV=1
Length = 701
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 8 DRVAAHGGGGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDS 67
D +++H + +FRT I++ +E +QI++K EL+Q V Y+ I++
Sbjct: 5 DLMSSHSSNW------KEIFRTHSIAQTIQLEKFVSQQIEEKGRELQQNVCFNYQSFIEA 58
Query: 68 ADSIVLMKSSCESISSNISSIHSHI 92
++++ ++++ E + N S +
Sbjct: 59 SENLSNIRNNLEKVLQNSYEFQSMV 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,729,626
Number of Sequences: 539616
Number of extensions: 15766689
Number of successful extensions: 46201
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 46138
Number of HSP's gapped (non-prelim): 67
length of query: 1063
length of database: 191,569,459
effective HSP length: 128
effective length of query: 935
effective length of database: 122,498,611
effective search space: 114536201285
effective search space used: 114536201285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)