Query 001514
Match_columns 1063
No_of_seqs 172 out of 206
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2033 Low density lipoprotei 100.0 8E-162 2E-166 1377.6 65.2 842 16-1005 3-860 (863)
2 PF08700 Vps51: Vps51/Vps67; 99.3 1E-11 2.2E-16 114.4 10.1 79 19-97 4-86 (87)
3 PF04124 Dor1: Dor1-like famil 97.2 0.016 3.4E-07 66.9 19.1 230 29-275 6-245 (338)
4 PF04100 Vps53_N: Vps53-like, 97.0 0.12 2.6E-06 60.8 23.7 204 22-243 9-236 (383)
5 PF15469 Sec5: Exocyst complex 96.9 0.0084 1.8E-07 63.0 11.9 160 51-218 2-169 (182)
6 PF10475 DUF2450: Protein of u 95.2 0.38 8.2E-06 54.5 14.7 181 30-220 28-213 (291)
7 KOG2180 Late Golgi protein sor 94.1 9.2 0.0002 47.8 23.3 201 25-243 27-251 (793)
8 KOG2069 Golgi transport comple 93.0 4.6 0.0001 49.3 18.1 196 30-245 31-238 (581)
9 PF12022 DUF3510: Domain of un 92.2 0.48 1E-05 47.3 7.6 54 751-805 28-81 (125)
10 KOG2346 Uncharacterized conser 89.4 2.1 4.6E-05 51.0 10.4 195 25-232 41-239 (636)
11 PF10392 COG5: Golgi transport 83.8 4.4 9.4E-05 40.8 7.9 69 31-99 27-95 (132)
12 KOG2347 Sec5 subunit of exocys 78.1 2.4 5.2E-05 53.6 4.6 126 30-157 184-318 (934)
13 PF14923 CCDC142: Coiled-coil 76.7 9.8 0.00021 45.8 8.9 125 684-834 224-348 (450)
14 PF06248 Zw10: Centromere/kine 76.1 14 0.00031 46.1 10.6 153 29-182 6-162 (593)
15 PF04437 RINT1_TIP1: RINT-1 / 76.1 18 0.00039 44.1 11.3 126 682-834 300-426 (494)
16 PF04091 Sec15: Exocyst comple 74.4 1.2E+02 0.0025 35.1 16.6 79 753-834 174-252 (311)
17 PF08385 DHC_N1: Dynein heavy 50.7 5.6E+02 0.012 31.5 20.9 96 680-804 434-539 (579)
18 PF10241 KxDL: Uncharacterized 41.2 1.3E+02 0.0028 28.4 7.7 70 24-93 5-81 (88)
19 PF10474 DUF2451: Protein of u 41.0 1.5E+02 0.0032 33.0 9.4 73 752-832 86-166 (234)
20 PF11855 DUF3375: Protein of u 28.5 3.6E+02 0.0079 33.1 10.9 122 55-200 174-300 (478)
21 KOG2856 Adaptor protein PACSIN 27.2 65 0.0014 37.7 3.8 63 965-1031 385-464 (472)
22 KOG3691 Exocyst complex subuni 25.5 3.9E+02 0.0085 35.0 10.3 123 33-156 46-171 (982)
23 PF14712 Snapin_Pallidin: Snap 24.3 4.7E+02 0.01 24.3 8.5 67 30-96 21-91 (92)
24 KOG2211 Predicted Golgi transp 24.3 9.1E+02 0.02 31.0 12.8 60 39-98 77-136 (797)
25 PF07393 Sec10: Exocyst comple 23.4 9E+02 0.019 31.1 13.5 73 753-834 576-648 (710)
26 COG0015 PurB Adenylosuccinate 22.0 1.8E+02 0.004 35.3 6.5 73 27-100 54-136 (438)
No 1
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-162 Score=1377.58 Aligned_cols=842 Identities=30% Similarity=0.416 Sum_probs=735.2
Q ss_pred CCCCCCCHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 001514 16 GGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSL 95 (1063)
Q Consensus 16 ~~~~~~~~d~LF~~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l 95 (1063)
++++.+|+|.||++|+++|||.||+++|.+||+||||||+|||+||||||+|||||++|+++++.+.+++..++.+|+++
T Consensus 3 ~~l~~rDvd~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL 82 (863)
T KOG2033|consen 3 ANLLNRDVDTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSL 82 (863)
T ss_pred CcccccCHHHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhh---ccccccccccc
Q 001514 96 SLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILL---DVNKEVDHLNF 172 (1063)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~---~~~~~~~l~~f 172 (1063)
..+. ++.+|+..+.+|..+++|++|||||||+++||.||++||++++++|+.+|++++||++.|. ..+.+ +++|
T Consensus 83 ~a~s-vA~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~l--l~nf 159 (863)
T KOG2033|consen 83 HANS-VAKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSML--LKNF 159 (863)
T ss_pred cccc-ccCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHH--Hhhc
Confidence 8554 3456666777788899999999999999999999999999999999999999999999554 34567 8999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchH
Q 001514 173 PLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDV 252 (1063)
Q Consensus 173 Pil~~Qw~~l~~fr~~Il~~~~~~L~~~~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~ 252 (1063)
|++.+||.++++||.+|.+++...|.+.+++.++++|||||++|+|+++|+|+|..||+.|+.+|.++|+. ..+.++.+
T Consensus 160 P~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~-~p~~~~~v 238 (863)
T KOG2033|consen 160 PALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND-GPSEPRRV 238 (863)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc-CCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 45556889
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCCCchhHHHhhcCCccccccCCCCCChHHHHhhhhhhHhhhhhh--------cC
Q 001514 253 VSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVM--------VI 324 (1063)
Q Consensus 253 ~~vi~~~v~li~~TL~~V~aLF~~~l~~~pll~~~~l~~~~~~qlf~gi~~~~~e~~~w~~frp~l~~~~--------~~ 324 (1063)
+++||.+|.++++|+.||++||++. +|+|+++...++... -++.+++|++.|++|+..+++.| .+
T Consensus 239 ka~il~~v~vl~~Tl~qv~elfl~~----~Llfstle~c~gq~~---~~~i~emE~~l~~sf~~lpesim~f~pr~lv~k 311 (863)
T KOG2033|consen 239 KATILNIVDVLKKTLAQVEELFLHG----ELLFSTLEVCNGQYK---CELIREMEADLAYSFEKLPESIMDFVPRHLVEK 311 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHhcCCccC---CCCchHHHHHHHHHHHhhHHHHhhccchhcccc
Confidence 9999999999999999999999986 899999877666543 36678999999999998766633 47
Q ss_pred CCHHHHHHHHHHHHHHhh-hhhhhccccchhhhhccchhhHHHHHHHHHHhhhhhhhhcchhhhhhhccCCccCCChHHH
Q 001514 325 LDKDYIAKTCFSWLRECG-GEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRI 403 (1063)
Q Consensus 325 Ls~e~i~~~l~~Wl~~~~-e~I~~~i~g~~LL~~V~S~k~La~ir~~v~~~l~~~~~~~~sl~wl~~~f~~~~~~~W~~i 403 (1063)
|+++++++.+++|+.+|+ ..|.+++. .++.+|.++|++.++.+.++. +...+.+|.++
T Consensus 312 ls~e~Lg~~lqQwvgk~n~a~i~~~i~--~~~~lv~~mkei~D~kd~lrt-------------------n~~~~~~wl~q 370 (863)
T KOG2033|consen 312 LSGEGLGTLLQQWVGKKNAAWIEKTIA--VTHKLVAEMKEIFDNKDQLRT-------------------NLQAITAWLKQ 370 (863)
T ss_pred ccHHHHHhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHh-------------------CCCcchHHHHH
Confidence 999999999999999998 89999984 999999999988887766663 23557899999
Q ss_pred HHHHhcCCCchHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCCcchhhhhccCCCCCCCcccccCCcc
Q 001514 404 RELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNST 483 (1063)
Q Consensus 404 c~~lL~~~l~~W~~lfq~lF~~R~k~II~~~f~~i~~~~~l~~~l~~i~~~~~~~~~d~~~~~~~~s~~~~~W~~~~~~~ 483 (1063)
|..+++++++||+++||++|++|+|+||+++|.+.++-.. .+++..|.+. +.+++ .++||+++|+.
T Consensus 371 ~~~llgs~L~fyd~~~q~afvdR~k~li~ss~~sa~k~~~-v~al~eIes~----~sn~p---------l~~Wfespndl 436 (863)
T KOG2033|consen 371 DWPLLGSNLSFYDKLLQTAFVDRAKILIISSWASAMKLTY-VQALLEIESI----ESNAP---------LQKWFESPNDL 436 (863)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc----cccCc---------cceeeeCCCCc
Confidence 9999999999999999999999999999999988777655 6788888752 22222 35677777644
Q ss_pred cccccccccccCCCCCcchhhhhhhccChhHHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhh---HHHHHHHHHHHHH
Q 001514 484 VKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKD---LAPYLQNKCYESM 560 (1063)
Q Consensus 484 ~~~~~l~~~~k~~~~~~~~~s~~~~~~~P~V~~lc~~lD~~L~~iL~Dl~~yl~~~~~~~r~~~---L~~~L~~~c~~~i 560 (1063)
+. ++....++.++ +|.+|.+.|++|.++ +|..||++|+.+|+|++.|+++++. .|++| +.+||++..-
T Consensus 437 p~--~ai~~~~~~p~--~fass~~~y~g~~is-lc~~~Ds~l~~kl~dLl~~les~tt-~r~aDk~sl~EfLre~a~--- 507 (863)
T KOG2033|consen 437 PQ--TAIFDERTYPP--DFASSQSHYGGISIS-LCNKFDSHLADKLSDLLDKLESKTT-KRFADKNSLFEFLRETAK--- 507 (863)
T ss_pred ch--hhhhhcccCch--hhhhhhcccCCchhH-HHHHHHHHHHHHHHHHHHhchhHHH-HHHhhhhhHHHHHHHhcc---
Confidence 32 23223344443 588999888888875 6777999999999999999999932 36766 8889984322
Q ss_pred HHHHHHHHHHHhhHHHHHhhCCCCCchhHHhHHHHHHHHHHHHHHhcCCCCcccccCCcchhhhhhhhhhhccchhhhhh
Q 001514 561 STILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQS 640 (1063)
Q Consensus 561 ~~il~~lk~el~~l~~~~~~~~~~~~~~~~~~~~LflgRl~~aL~~lcp~L~~~lg~~~~w~~~~~~a~~~~~~s~~r~~ 640 (1063)
+...++.++.-.+..+. .+..|++.|+|.+|+++|||||.|+..|..
T Consensus 508 -----~~~~e~~S~~~G~~l~~--------~h~~L~~lRl~~~l~elsp~Lk~c~~qpse-------------------- 554 (863)
T KOG2033|consen 508 -----LNFFEFFSQKWGFSLKK--------RHFFLVLLRLSNFLNELSPALKNCVKQPSE-------------------- 554 (863)
T ss_pred -----hHHHHHHHHHHHHHhhh--------hhhHHhhHHHHHHHHHhChHHHhHHhCchh--------------------
Confidence 22222222211111111 147899999999999999999977765532
Q ss_pred hhhccccCCCCCCCcCCCcccccchhHHhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccc
Q 001514 641 RVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDL-GKD 719 (1063)
Q Consensus 641 r~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~g~~~~~~~k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L-~~d 719 (1063)
+|||++-++++++ ++|||++++.+.++|+.+ .+|..|++++|.+.+.+.| .+|
T Consensus 555 -------------------SrkQ~~~~tael~------~akfeeic~~m~d~~~s~-~lW~~~v~dvL~h~llr~L~l~d 608 (863)
T KOG2033|consen 555 -------------------SRKQWLEQTAELC------IAKFEEICTPMADMATSN-ALWETMVTDVLQHLLLRLLELHD 608 (863)
T ss_pred -------------------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhc
Confidence 2456666666663 789999999999999999 9999999999999999999 999
Q ss_pred ccccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHH
Q 001514 720 DGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIY 799 (1063)
Q Consensus 720 ~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y 799 (1063)
|.++++++++.|+|++|+|++|+++ ++|||||+|||||+|+|||.+|+||||||||+|||+|||+|+++|+.+|+.||
T Consensus 609 D~~svla~f~~W~el~l~e~dEsqs--tlkIrLPsqPslyiqSfL~rl~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~Y 686 (863)
T KOG2033|consen 609 DKQSVLARFLAWAELALAELDESQS--TLKIRLPSQPSLYIQSFLQRLHQEINRVGGHTLPPKVLQAFIQSLIGKLLCHY 686 (863)
T ss_pred ccchhhhhhhhHHHHHHHHHhcccc--eeeeecCCCccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877665 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcCCCCCCCccccccchhhccccccchhhhhhhhHHhHHHHHHHHhcC
Q 001514 800 RNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQR 879 (1063)
Q Consensus 800 ~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 879 (1063)
|+|..+.. . ..+||+||||||||||+.+||++++. .|+. ++||+++.+.|+++
T Consensus 687 E~l~~a~~-~--kasqn~aLQll~DLrfl~~Vl~~~~~--------------eR~~----------~DrI~~vt~qL~~~ 739 (863)
T KOG2033|consen 687 EGLAHAEC-T--KASQNIALQLLFDLRFLERVLAISRE--------------ERTL----------YDRIHAVTNQLRDY 739 (863)
T ss_pred hhhhHHHH-H--HHHHhhHHHHHHHHHHHHHHHhcCcc--------------cccc----------hhHHHHHHHHHHHh
Confidence 99876532 2 58999999999999999999999652 1444 45899999999999
Q ss_pred CCCccccccchHHHhHHHHHHHhhhhhhhhccccCcccccccCCCCCCCCCcccccCCCCCcccccccccCcCCCCCCcc
Q 001514 880 LDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKT 959 (1063)
Q Consensus 880 IDPfD~~vf~p~L~~N~~r~~~R~~vlfG~L~~~~~~~~~~s~~~~~~~~~Nil~ls~~prF~lLPis~p~~ssr~~~s~ 959 (1063)
||||||++|+||||+|++|+|+|++||||++|+.++|+++++++++++.+||||||+++|||||||||||+++++.+..+
T Consensus 740 iDPfD~~~f~phl~~n~~r~~~R~~vlfG~~t~~~~q~a~~as~l~~~~~~Nilplsss~rF~lLPismpaa~s~~s~e~ 819 (863)
T KOG2033|consen 740 IDPFDFELFAPHLTANVSRAASRLQVLFGVLTPAPSQGAAAASSLAHEADPNILPLSSSGRFPLLPISMPAAGSVTSAER 819 (863)
T ss_pred cCchhHHhhhhHHHHHHHHHHHHHhhhheeecCCccccchhhhhhhccCCCCccccccCCCccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhcccccccccccCcccccccCCCCCCcccchhhhhhhh
Q 001514 960 SAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFM 1005 (1063)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1063)
+.|....|-+-+. |+... |+.+++.|.+.|+++|++ +++||
T Consensus 820 k~pv~~p~~sta~-~pt~~-G~~~r~~dsee~~ssa~s---ff~~~ 860 (863)
T KOG2033|consen 820 KSPVQEPVESTAT-TPTRK-GNGARKGDSEESKSSAAS---FFGMS 860 (863)
T ss_pred cCCCCCchhhhcC-CCCCC-CcccccccccccccchHh---Hhccc
Confidence 9999999998888 99998 999999999999999987 56555
No 2
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.30 E-value=1e-11 Score=114.35 Aligned_cols=79 Identities=33% Similarity=0.520 Sum_probs=74.8
Q ss_pred CCCCHHHhhc----cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 001514 19 GYGDAESLFR----TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILS 94 (1063)
Q Consensus 19 ~~~~~d~LF~----~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~ 94 (1063)
+..||++.|. ++++++|+.++++|+.+|+.++++||++||++|||+|++||+|..|+..+..+.+.+.+++..|..
T Consensus 4 ~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 4 ENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred CcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578898887 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcc
Q 001514 95 LSL 97 (1063)
Q Consensus 95 l~~ 97 (1063)
+.+
T Consensus 84 l~~ 86 (87)
T PF08700_consen 84 LQE 86 (87)
T ss_pred hhc
Confidence 754
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.23 E-value=0.016 Score=66.89 Aligned_cols=230 Identities=17% Similarity=0.244 Sum_probs=150.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCCCCCC
Q 001514 29 TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLA 108 (1063)
Q Consensus 29 ~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~~~~~~~~~~~ 108 (1063)
++++++++.--..+..++++-..++..+.=+.|+=+|++|+.+.........+.+.+.++...+..+...... ......
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~-f~~~~~ 84 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQR-FSSKAQ 84 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5777777787889999999999999999999999999999999999988877777776666655443332210 000000
Q ss_pred CCCCcccc---hhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHh
Q 001514 109 NPNPNRLK---IYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESF 185 (1063)
Q Consensus 109 s~~~~~~~---~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~f 185 (1063)
.-...+.. ...-..++.=++++|..+-.|+..|.|-+|=.++...+.+.+... ..|++..-+..+...
T Consensus 85 ~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~---------~~~lv~~i~~ev~~~ 155 (338)
T PF04124_consen 85 KISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP---------NIPLVKSIAQEVEAA 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc---------CchhHHHHHHHHHHH
Confidence 00001111 112224555578999999999999999999888877776555432 257788777777777
Q ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 001514 186 KVQISQRGRERLLDNGLGIQAYADALAAVAVID---ELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKV 262 (1063)
Q Consensus 186 r~~Il~~~~~~L~~~~~s~~~~~~aLaAl~Lld---sss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~~~vi~~~v~l 262 (1063)
....+...-..|+.+ +.. ..|+-.+..+. ..+..+.=..||..|..|+...+...+..+ ...-|+..+++
T Consensus 156 ~~~ml~~Li~~L~~~-l~l---~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~---~~~~lkr~iei 228 (338)
T PF04124_consen 156 LQQMLSQLINQLRTP-LKL---PACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSD---PYRYLKRYIEI 228 (338)
T ss_pred HHHHHHHHHHHHcCc-ccH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhh---HHHHHHHHHHH
Confidence 777777777777765 333 33333333332 223344556799999999998777533222 23445555555
Q ss_pred HH----HHHHhhhhhhh
Q 001514 263 IQ----ITVAQVGELFL 275 (1063)
Q Consensus 263 i~----~TL~~V~aLF~ 275 (1063)
+. .++.|-.++|+
T Consensus 229 ~R~~~fdiitqY~aIF~ 245 (338)
T PF04124_consen 229 YREHLFDIITQYRAIFP 245 (338)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 44 44445556664
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.01 E-value=0.12 Score=60.77 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=149.0
Q ss_pred CHHHhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHhh------cCcchhHHhhhH--------HHHHHHHhHHHHHHHHH
Q 001514 22 DAESLF-RTKPISEIRNVELTTKKQIQQKQEELRQLV------GTRYRDLIDSAD--------SIVLMKSSCESISSNIS 86 (1063)
Q Consensus 22 ~~d~LF-~~~ti~EIr~Iek~lr~eIe~KkeeLR~mV------GeRYRDLL~aAD--------tIv~M~~~s~~V~~~l~ 86 (1063)
..+++| ...++..|..+-.+++.+|.+-.+++++.| |.++++-|+.|. .|.+++.-+++-...|.
T Consensus 9 ~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~ 88 (383)
T PF04100_consen 9 YINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQ 88 (383)
T ss_pred HHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788 568889999999999999998888888777 677766555543 56677777777778888
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccc
Q 001514 87 SIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKE 166 (1063)
Q Consensus 87 ~m~~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~ 166 (1063)
+|.+.+..|..... .+ .....+--++..|+.+-+..-.+++.++|-++|.++.....|...+..+..
T Consensus 89 ~it~dIk~LD~AKr-----NL-------T~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yks- 155 (383)
T PF04100_consen 89 EITRDIKQLDNAKR-----NL-------TQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKS- 155 (383)
T ss_pred HHHHHHHHHHHHHH-----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccC-
Confidence 88887776644321 00 011233348889999999999999999999999999988888877776654
Q ss_pred cccccchHHHHHHHHHHHhHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001514 167 VDHLNFPLLQHQCQIVESFKVQISQRGRERLLDN---------GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWI 237 (1063)
Q Consensus 167 ~~l~~fPil~~Qw~~l~~fr~~Il~~~~~~L~~~---------~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~R~~ai 237 (1063)
.|-+.+.+..+..++..+...+..-++.. ......+.+|-..+=.|+...-.+++.-|...-..-.
T Consensus 156 -----i~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY 230 (383)
T PF04100_consen 156 -----IPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY 230 (383)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 48888888888887776666666544322 1133455555555556667777799999999888888
Q ss_pred HHHhcC
Q 001514 238 LQTLGG 243 (1063)
Q Consensus 238 ~~~L~~ 243 (1063)
..++..
T Consensus 231 ~~iF~~ 236 (383)
T PF04100_consen 231 RRIFRE 236 (383)
T ss_pred HHHHcc
Confidence 889864
No 5
>PF15469 Sec5: Exocyst complex component Sec5
Probab=96.92 E-value=0.0084 Score=62.97 Aligned_cols=160 Identities=16% Similarity=0.280 Sum_probs=114.9
Q ss_pred HHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHH------HHHHHHHHHhhhcccccccCCCCCCCCCC--cccchhhhhh
Q 001514 51 EELRQLVGTRYRDLIDSADSIVLMKSSCESISS------NISSIHSHILSLSLSAETATTPKLANPNP--NRLKIYGIAC 122 (1063)
Q Consensus 51 eeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~------~l~~m~~~c~~l~~~~~~~~~~~~~s~~~--~~~~~~~~aa 122 (1063)
++|.++|.+-|=..|.+-|+|..|+.....-.. .+..+...+.........-..|-....+. .-.....+..
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 689999999999999999999999988843332 24444444433222211000000000000 0123566778
Q ss_pred hhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 001514 123 RVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGL 202 (1063)
Q Consensus 123 qiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~fr~~Il~~~~~~L~~~~~ 202 (1063)
+.++|.++|-.|..+|..|+|-.|-.-|-.++.+...... ..+++++-|..++.--.++.......|.+...
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~--------~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~ 153 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQ--------QVPVFQKVWSEVEKIIEEFREKLWEKLLSPPS 153 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999887766532 25788888998888888888888889999998
Q ss_pred CHHHHHHHHHHHHhhc
Q 001514 203 GIQAYADALAAVAVID 218 (1063)
Q Consensus 203 s~~~~~~aLaAl~Lld 218 (1063)
+.++..++..-+.=|+
T Consensus 154 s~~~~~~~i~~Ll~L~ 169 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELN 169 (182)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8888888887666664
No 6
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=95.15 E-value=0.38 Score=54.52 Aligned_cols=181 Identities=10% Similarity=0.117 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCCCCCCC
Q 001514 30 KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLAN 109 (1063)
Q Consensus 30 ~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~~~~~~~~~~~s 109 (1063)
.+.++|.+.+.++....+-=-..|=+.|.++|-....+-..|.+++.........+.++++.+..........+..-...
T Consensus 28 ~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~ 107 (291)
T PF10475_consen 28 LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRL 107 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66778888899999999999999999999999999999999999999999999999999888876554421000000000
Q ss_pred CCCcc---cchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhH
Q 001514 110 PNPNR---LKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFK 186 (1063)
Q Consensus 110 ~~~~~---~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~fr 186 (1063)
. ..+ ......-.+||-+.++-..|=.+|+.|+|..|-.+..=++.+...+.+ +.-++.....+....
T Consensus 108 ~-rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~---------~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 108 Q-RKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG---------YSCVRHLSSQLQETL 177 (291)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc---------chHHHHHhHHHHHHH
Confidence 0 011 234566678889999999999999999999999999999888655532 445555556677777
Q ss_pred HHHHHHHHHhhccc--CCCHHHHHHHHHHHHhhcCC
Q 001514 187 VQISQRGRERLLDN--GLGIQAYADALAAVAVIDEL 220 (1063)
Q Consensus 187 ~~Il~~~~~~L~~~--~~s~~~~~~aLaAl~Lldss 220 (1063)
..|.......|... .-+++.+..-+-||.||.+.
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh
Confidence 88888888888755 68889999999999999853
No 7
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=9.2 Score=47.76 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=139.7
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHhh------cCcch-hHHhhh-------HHHHHHHHhHHHHHHHHHHHH
Q 001514 25 SLF-RTKPISEIRNVELTTKKQIQQKQEELRQLV------GTRYR-DLIDSA-------DSIVLMKSSCESISSNISSIH 89 (1063)
Q Consensus 25 ~LF-~~~ti~EIr~Iek~lr~eIe~KkeeLR~mV------GeRYR-DLL~aA-------DtIv~M~~~s~~V~~~l~~m~ 89 (1063)
+|| ..-++..|..+=++++.+|..-..+||..| |.|-. +|=++= -.|.+++.-+++-...+.+|.
T Consensus 27 ~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiT 106 (793)
T KOG2180|consen 27 ELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEIT 106 (793)
T ss_pred HhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 577 667999999999999999999999999776 44432 122222 234444444444455555555
Q ss_pred HHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhcccccccc
Q 001514 90 SHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDH 169 (1063)
Q Consensus 90 ~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l 169 (1063)
+.+..|.-..+ .+ .....+--+++.|++.-|..-..+++++|=.||..|-.-..|......+..+
T Consensus 107 rdIKqLD~AKk-----NL-------TtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v--- 171 (793)
T KOG2180|consen 107 RDIKQLDFAKK-----NL-------TTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSV--- 171 (793)
T ss_pred HHHHhhhHHHh-----hH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcch---
Confidence 55544322210 00 1123334588999999999999999999999999998888887777766553
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 001514 170 LNFPLLQHQCQIVESFKVQISQRGRERLLDN---------GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQT 240 (1063)
Q Consensus 170 ~~fPil~~Qw~~l~~fr~~Il~~~~~~L~~~---------~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~R~~ai~~~ 240 (1063)
|-+......|+.++..+...+..-+... ....+-+.++.--.-.+|.+...+.++-|+..-..-+.++
T Consensus 172 ---~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~ey~~I 248 (793)
T KOG2180|consen 172 ---DEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEEYEQI 248 (793)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888777776644 1224455555445555789999999999999998888888
Q ss_pred hcC
Q 001514 241 LGG 243 (1063)
Q Consensus 241 L~~ 243 (1063)
+..
T Consensus 249 F~e 251 (793)
T KOG2180|consen 249 FRE 251 (793)
T ss_pred Hhc
Confidence 875
No 8
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=4.6 Score=49.27 Aligned_cols=196 Identities=16% Similarity=0.230 Sum_probs=130.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHH-------HHHHHHhhhccccccc
Q 001514 30 KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNIS-------SIHSHILSLSLSAETA 102 (1063)
Q Consensus 30 ~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~-------~m~~~c~~l~~~~~~~ 102 (1063)
.++++.|+=...++.|+..-..+++++-=.-||-+|++|+-+..+.+.-++....+. ++...|.+......
T Consensus 31 ~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~~~~~-- 108 (581)
T KOG2069|consen 31 KPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQDFAE-- 108 (581)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHHHHHH--
Confidence 557777777777999999999999999999999999999999888877766655443 34445544332210
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 001514 103 TTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIV 182 (1063)
Q Consensus 103 ~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l 182 (1063)
...+.+...........+++=|+++|+.|=+|++.|.|..|=.+--.+..+...- +. .|++++-...+
T Consensus 109 ---~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~----~~-----~pvi~~i~~~v 176 (581)
T KOG2069|consen 109 ---EISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRF----GT-----IPVIQEIATEV 176 (581)
T ss_pred ---HhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhc----cc-----chHHHHHHHHH
Confidence 0011111112345556788889999999999999999999888776665544332 22 37777766666
Q ss_pred HHhHHHHHHHHHHhhccc-----CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 001514 183 ESFKVQISQRGRERLLDN-----GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNA 245 (1063)
Q Consensus 183 ~~fr~~Il~~~~~~L~~~-----~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~R~~ai~~~L~~~~ 245 (1063)
.+...-++......|+.. -+....+......+ +..+.=-.||..|-+|+..+++...
T Consensus 177 ~~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~~------t~~~LRl~fl~~rd~~l~k~l~~I~ 238 (581)
T KOG2069|consen 177 EQTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAVL------TENQLRLKFLQARDAWLEKILEDIS 238 (581)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666666666643 12223333333333 3344444689999999999888643
No 9
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=92.24 E-value=0.48 Score=47.25 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=44.3
Q ss_pred eecCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001514 751 SLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLST 805 (1063)
Q Consensus 751 rlP~~pS~~~q~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~ 805 (1063)
.+|..||+||-+.|--+++=+... ++.++..++++++..++..|...|-....+
T Consensus 28 ~~Pt~~S~yV~~il~Pl~~F~~~~-~~~~~~~~~~~~~~~v~~~v~~~y~~~~~e 81 (125)
T PF12022_consen 28 PVPTKPSPYVSSILRPLKSFLEEY-SSYLSPEIIEEWLQKVITEVTERYYEIASE 81 (125)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999988887744444 889999999999999999888887776433
No 10
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.42 E-value=2.1 Score=51.02 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=128.8
Q ss_pred HhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCC
Q 001514 25 SLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATT 104 (1063)
Q Consensus 25 ~LF~~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~~~~~~~ 104 (1063)
.|-+..++++.-.=|..+-.+|-.--..+.++|=|-|--.|.+-|||..|+..--.+......+.+......... .+.
T Consensus 41 kL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s--~~l 118 (636)
T KOG2346|consen 41 KLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKS--DGL 118 (636)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhh--ccc
Confidence 344788999999999999999999999999999999999999999999999877666554444433322211111 111
Q ss_pred CC-CCCCC---CcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 001514 105 PK-LANPN---PNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQ 180 (1063)
Q Consensus 105 ~~-~~s~~---~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~ 180 (1063)
.. +.... ......|.+--+++++-|.|-.+-+|.+.+.|-.|-+.|-.|.-+.+.-.+. ..|... ..
T Consensus 119 ~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~------psfq~~---~~ 189 (636)
T KOG2346|consen 119 AGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGR------PSFQED---DV 189 (636)
T ss_pred cchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCC------CcHHHh---cc
Confidence 11 00000 0112346777889999999999999999999999888877666444333211 112222 11
Q ss_pred HHHHhHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001514 181 IVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLET 232 (1063)
Q Consensus 181 ~l~~fr~~Il~~~~~~L~~~~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~ 232 (1063)
.=...+.+|++.....|++.....+..++|.--+..+. - +.|-+..++..
T Consensus 190 ~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg-~-p~del~~~lL~ 239 (636)
T KOG2346|consen 190 PSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLG-V-PVDELKAKLLE 239 (636)
T ss_pred chHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-C-ChHHHHHHHHH
Confidence 22445677788888899998888888887755443332 2 34444444433
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=83.77 E-value=4.4 Score=40.77 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccc
Q 001514 31 PISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSA 99 (1063)
Q Consensus 31 ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~~ 99 (1063)
+.-.|-.--+++..+|++-..++++.|-++|-|||.-+..|.......+.|...+..+...+.++....
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999999999999999999999999999999999999998886654
No 12
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.10 E-value=2.4 Score=53.60 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHH-----HHHHHHhhhcccccccC-
Q 001514 30 KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNIS-----SIHSHILSLSLSAETAT- 103 (1063)
Q Consensus 30 ~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~-----~m~~~c~~l~~~~~~~~- 103 (1063)
-|.++.+.-=..+..+...+++.=++||-.-+-.+|..-||+..+++--++..+..+ .+...+.+.........
T Consensus 184 ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~ 263 (934)
T KOG2347|consen 184 TSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFE 263 (934)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHH
Confidence 466777777778899999999999999999999999999999999988877332211 12222222111100000
Q ss_pred ---CCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHH
Q 001514 104 ---TPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQ 157 (1063)
Q Consensus 104 ---~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~ 157 (1063)
-++.... +-.....+-.+.|+|-..|..|-+.+..|+|-.+-.=|-.|..+.
T Consensus 264 ~vl~Rk~~AD--stRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~ 318 (934)
T KOG2347|consen 264 DVLERKDKAD--STRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLF 318 (934)
T ss_pred HHHhcccccc--cHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhh
Confidence 0111100 112567888999999999999999999999998888777776544
No 13
>PF14923 CCDC142: Coiled-coil protein 142
Probab=76.67 E-value=9.8 Score=45.76 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHHHH
Q 001514 684 ELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISF 763 (1063)
Q Consensus 684 ~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q~~ 763 (1063)
+.-+.|..++.+..++-...+.+.-...|..-+.. -+-|.--. .=.+|..||.|+..+
T Consensus 224 ~~~~~Lq~~s~e~~~~f~~~C~~~s~~~f~~~mP~---------g~~WR~~~-------------~~~lP~~pS~Yv~~~ 281 (450)
T PF14923_consen 224 ENIAKLQSLSSECLRLFSQDCRKMSLAIFELCMPS---------GRYWRRSL-------------SPELPSAPSEYVEYV 281 (450)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC---------cchhcccC-------------CCCCCCCccHHHHHH
Confidence 33344446666666666666544444444444433 24587321 223799999999988
Q ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcC
Q 001514 764 LCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSG 834 (1063)
Q Consensus 764 L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~ 834 (1063)
+-.+-.=+=+ |-+.||...-...+.-+++.++++.-+++=. +.-+-|..||+||+=|+-|+.+++..
T Consensus 282 v~~vl~PVl~-g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~---~kIKFS~~GAlQL~~DF~~Vr~wl~~ 348 (450)
T PF14923_consen 282 VETVLEPVLQ-GVQGLPPEAQIPALSQALTAMLEAWLDHILM---HKIKFSLQGALQLRQDFGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHH---ccceeeHHHHHHHHHHHHHHHHHHHh
Confidence 8766544443 3345565555555555566666655554432 35566999999999999999999977
No 14
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=76.13 E-value=14 Score=46.08 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=100.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHH-hhhcccccccCCCCC
Q 001514 29 TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHI-LSLSLSAETATTPKL 107 (1063)
Q Consensus 29 ~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c-~~l~~~~~~~~~~~~ 107 (1063)
..+.+.++..-.++...|++=|+|.+.++=++|-|.+....+..++...+..+.+.|.++...+ .............+.
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~ 85 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEEL 85 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3566778888899999999999999999999999999888888888777777777775554431 111000000000000
Q ss_pred ---CCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 001514 108 ---ANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIV 182 (1063)
Q Consensus 108 ---~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l 182 (1063)
..+-......+.+.-+++-+.+.-+.+..++++|+|+.||...--.+.+...+.... ..+..-++.+..+|..+
T Consensus 86 ~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~-~~~~~i~~~Lk~e~~~l 162 (593)
T PF06248_consen 86 QELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSK-FEELKILKLLKDEYSEL 162 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCc-ccccHHHHHHHHHHHHH
Confidence 000000123466666777777888889999999999999999999998888874211 00022256666665443
No 15
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=76.09 E-value=18 Score=44.10 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHH
Q 001514 682 LKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYII 761 (1063)
Q Consensus 682 ~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q 761 (1063)
+++.-..+..+..++...=+..+...+...+...... ..|..+... .=.-|..||+.+.
T Consensus 300 Fde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~----------~~W~~~~~~-----------~~~~~~~~S~el~ 358 (494)
T PF04437_consen 300 FDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKR----------SQWSSIESP-----------SDSSPLSPSPELV 358 (494)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT------------GGGT------------------------GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------cCCCCcccc-----------cccccCCCCHHHH
Confidence 4444444444444443333334444443444444442 359866322 2234678898888
Q ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHH-HHHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcC
Q 001514 762 SFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGI-YRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSG 834 (1063)
Q Consensus 762 ~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~-Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~ 834 (1063)
..|-.+-.-++.+--. ||......+-++++..+-.. |+.++.. .+-|+.|+.|+.+|++.|-.+|..
T Consensus 359 ~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~-----n~Fs~~Ga~Ql~~D~~~L~~~~~~ 426 (494)
T PF04437_consen 359 PALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMS-----NKFSRAGAAQLQFDMRALFSVFSQ 426 (494)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTT-----S-B-HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhc-----CeeChhHHHHHHHHHHHHHHHHHh
Confidence 8888777777766554 99999999999988888886 5666642 366999999999999999999965
No 16
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=74.36 E-value=1.2e+02 Score=35.14 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=51.6
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhh
Q 001514 753 PSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVL 832 (1063)
Q Consensus 753 P~~pS~~~q~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl 832 (1063)
|..||.|+..++-=+-.-++-+ --.||..+.+.+.-+.+..|-....+++-+ ....++|..++-|+-.|++||....
T Consensus 174 ~~~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~--~~vk~in~~al~~~~~Dv~~lE~f~ 250 (311)
T PF04091_consen 174 PGEPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLS--DDVKRINMNALQNFDLDVKYLESFA 250 (311)
T ss_dssp --S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcC--CcccccCHHHHHHHHHHHHHHHHHH
Confidence 3349999987665444444333 456999999999999999988887777743 3577889999999999999999988
Q ss_pred cC
Q 001514 833 SG 834 (1063)
Q Consensus 833 ~~ 834 (1063)
..
T Consensus 251 ~~ 252 (311)
T PF04091_consen 251 DS 252 (311)
T ss_dssp TT
T ss_pred Hh
Confidence 55
No 17
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=50.70 E-value=5.6e+02 Score=31.50 Aligned_cols=96 Identities=17% Similarity=0.320 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHH
Q 001514 680 PKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLY 759 (1063)
Q Consensus 680 ~k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~ 759 (1063)
.+++++.+.|.....+.|.-|...+.......+...|. ....+.++ .+.|=..|
T Consensus 434 ~~~~~l~~~l~~~e~~~~~~W~~~i~~~~~~~L~~~ll-------------------~~~~~~~~----~l~VNfd~--- 487 (579)
T PF08385_consen 434 QKYNELLKKLDEYEKEIFEEWLNEIESNINSSLSQPLL-------------------KRRSDENG----RLVVNFDP--- 487 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccee-------------------eeccCCCc----eEEEeCCH---
Confidence 46788999999988999999988765544222222111 11111111 22233333
Q ss_pred HHHHHHHHHHHHHHh--cCCcCCHHHHHHHHH--------HHHHHHHHHHHHHhh
Q 001514 760 IISFLCRACEEIHRI--GGHVLDKSILQKFSS--------RLLEKVIGIYRNFLS 804 (1063)
Q Consensus 760 ~q~~L~~~c~el~ri--g~h~Lpk~~lq~l~~--------~l~~~vl~~Y~~~~~ 804 (1063)
-|..+++|+.-. -|..+|..++..+.. ..+..++..|....+
T Consensus 488 ---~l~~l~rEvr~l~~lg~~iP~~~~~~~~~~~~l~~~~~~L~~~~~~yn~i~~ 539 (579)
T PF08385_consen 488 ---ELLTLLREVRYLQSLGFEIPEEILELYEQAEKLYPYAESLQEIVRFYNSIIE 539 (579)
T ss_pred ---HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246688888854 678999999865533 235667778887664
No 18
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=41.16 E-value=1.3e+02 Score=28.39 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhc---Ccc----hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 001514 24 ESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVG---TRY----RDLIDSADSIVLMKSSCESISSNISSIHSHIL 93 (1063)
Q Consensus 24 d~LF~~~ti~EIr~Iek~lr~eIe~KkeeLR~mVG---eRY----RDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~ 93 (1063)
..+|..-.+.+|-..+.++-..++.|.++|..... .|| .|+-+-..++.+|+.+.+.|...|..|.....
T Consensus 5 ~~~~d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 5 TQAVDPEDLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999986543 343 34556677888899888888888888887654
No 19
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=40.99 E-value=1.5e+02 Score=33.02 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=47.7
Q ss_pred ecCCCcHHHHHHHHHHH---HHHHHh-cCCcCCHHHHHHHHHHHH----HHHHHHHHHHhhhhhhcccccchhhHHHHHh
Q 001514 752 LPSMPSLYIISFLCRAC---EEIHRI-GGHVLDKSILQKFSSRLL----EKVIGIYRNFLSTIEAHESQVSEKGVLQVLF 823 (1063)
Q Consensus 752 lP~~pS~~~q~~L~~~c---~el~ri-g~h~Lpk~~lq~l~~~l~----~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLf 823 (1063)
+|.++|.||-.++=.+. ..+.++ +...+|+++...|-+.+. ..+++.|.+ ..+.|-.|=-++.+
T Consensus 86 v~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~--------vkKCs~eGRalM~l 157 (234)
T PF10474_consen 86 VMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSR--------VKKCSNEGRALMQL 157 (234)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCChhhHHHHHH
Confidence 48899999987665432 223334 445689885544433333 344666665 24567778888889
Q ss_pred hHHhHHHhh
Q 001514 824 DLRFSADVL 832 (1063)
Q Consensus 824 Dlrfl~~vl 832 (1063)
|++-+..-|
T Consensus 158 D~q~~~~~l 166 (234)
T PF10474_consen 158 DFQQLQNKL 166 (234)
T ss_pred HHHHHHHHH
Confidence 999888777
No 20
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=28.53 E-value=3.6e+02 Score=33.07 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred HhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHH
Q 001514 55 QLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENI 134 (1063)
Q Consensus 55 ~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~I 134 (1063)
+.|.+|||+++..|..+. .+-.+|.+++.+|.+.++.--.. ...+-+..+.-+++--+.|
T Consensus 174 ~~~~er~~~i~~la~~L~---~DFr~V~~~~r~l~r~lr~~i~~-----------------~~~~~G~vL~~~~~~~d~l 233 (478)
T PF11855_consen 174 TQARERARQILQLARELP---ADFRRVEDNFRELDRALRERIID-----------------WDGSRGEVLDEYFDGYDAL 233 (478)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-----------------ccccHHHHHHHHHHhHHHH
Confidence 445566666665554332 34445555555555554321110 0112234444444444444
Q ss_pred HhhhccCchHHHHHHHHHHHHHHHHhhcc-ccccccccchHH----HHHHHHHHHhHHHHHHHHHHhhccc
Q 001514 135 WGCLDESMFLEAATRYVRAKHVQYILLDV-NKEVDHLNFPLL----QHQCQIVESFKVQISQRGRERLLDN 200 (1063)
Q Consensus 135 W~~Ld~~~~L~AA~lyllar~l~~~L~~~-~~~~~l~~fPil----~~Qw~~l~~fr~~Il~~~~~~L~~~ 200 (1063)
+.+ +.|+-+.|.+-|+...--...|... ..+ +. .|++ ..+...+..+...+...+..+....
T Consensus 234 ~~S-dqGrsF~aF~~~L~d~~~~~~l~~~l~~V--l~-~~~~~~L~~~~r~~Lr~l~~~l~~~~~~V~~~~ 300 (478)
T PF11855_consen 234 AES-DQGRSFRAFWDFLLDPERQAELDELLDQV--LA-RPFARDLDPDQRRFLRRLHRRLLEAGEEVQRTR 300 (478)
T ss_pred hcC-CCCCcHHHHHHHHcCHHHHHHHHHHHHHH--Hc-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 4689999999999877655555521 111 11 1222 2466678888888888888777653
No 21
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=27.21 E-value=65 Score=37.75 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=43.1
Q ss_pred cchhcccc-cccccccCcccccccCCCCCCcccchhhhhhhhhcccccccccchhccccc----------------CCcc
Q 001514 965 LDEISSRA-TWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLT----------------DGQV 1027 (1063)
Q Consensus 965 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 1027 (1063)
++|++.+. +|. -+|| ...-|||.+-.|.-.|+-+=+=--|.---|=++|-|-+|. .|+|
T Consensus 385 s~~~s~np~~~t-~~nG---dsnPfdd~a~~g~~v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~v 460 (472)
T KOG2856|consen 385 SDDESPNPFGWT-PSNG---DSNPFDDDAKGGDFVRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRV 460 (472)
T ss_pred cccccCCCCCcC-CCCC---CCCCCcccccCCceeeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcc
Confidence 57777776 786 5677 3556778888877777665444456655566777777654 3899
Q ss_pred cccc
Q 001514 1028 GIFK 1031 (1063)
Q Consensus 1028 ~~~~ 1031 (1063)
|-|+
T Consensus 461 GLyP 464 (472)
T KOG2856|consen 461 GLYP 464 (472)
T ss_pred cccc
Confidence 9776
No 22
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=3.9e+02 Score=35.03 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHh---hhcccccccCCCCCCC
Q 001514 33 SEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHIL---SLSLSAETATTPKLAN 109 (1063)
Q Consensus 33 ~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~---~l~~~~~~~~~~~~~s 109 (1063)
+++..--.+|-..-++=-..|-.+|-+.|-|+-..--+-.++-+.+....+.+..+..++. ++-.... .++.+.=-
T Consensus 46 e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~r-deLqklw~ 124 (982)
T KOG3691|consen 46 EPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRR-DELQKLWA 124 (982)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHH
Confidence 3333333344444444556788888888888765544444443333333344444443322 1111100 01111101
Q ss_pred CCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHH
Q 001514 110 PNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHV 156 (1063)
Q Consensus 110 ~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l 156 (1063)
.+....+...+-.+|.=|..+|++|-.+++..+|++|+.+...+.-+
T Consensus 125 ~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~ 171 (982)
T KOG3691|consen 125 ENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWEL 171 (982)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123455677888888999999999999999999999999877743
No 23
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.29 E-value=4.7e+02 Score=24.28 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhc--Ccc--hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 001514 30 KPISEIRNVELTTKKQIQQKQEELRQLVG--TRY--RDLIDSADSIVLMKSSCESISSNISSIHSHILSLS 96 (1063)
Q Consensus 30 ~ti~EIr~Iek~lr~eIe~KkeeLR~mVG--eRY--RDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~ 96 (1063)
..|.+++.-+..|...|+.-.++|+..=. .-+ =|+..-...++.++..+..+.+.+..++.+...+.
T Consensus 21 ~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 21 QQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777788888888888888875543 222 24556777888888888889899988888876653
No 24
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.26 E-value=9.1e+02 Score=31.02 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 001514 39 ELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLS 98 (1063)
Q Consensus 39 ek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~~~ 98 (1063)
=.+|...|.+-++|||+.|=.|.-+|+.-|-.+..-.-.-..+...+++++....++...
T Consensus 77 ~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd 136 (797)
T KOG2211|consen 77 CDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKND 136 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666667789999999999999999999888776666666777777777766665443
No 25
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=23.37 E-value=9e+02 Score=31.12 Aligned_cols=73 Identities=29% Similarity=0.381 Sum_probs=46.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhh
Q 001514 753 PSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVL 832 (1063)
Q Consensus 753 P~~pS~~~q~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl 832 (1063)
|..+=--+..+|...|..+... |++..+..|..++..++.....+.+ ..+++|..|++||.-|+.+..+++
T Consensus 576 ~T~ac~~vv~~L~~~~~~~~~~----l~~~nl~~f~~elg~~l~~~l~~h~-----kk~~vs~~Gg~~l~~Dl~~Y~~~~ 646 (710)
T PF07393_consen 576 PTPACQEVVEFLERHCSLLKGS----LDGSNLDVFLQELGERLHRLLLKHL-----KKFTVSSTGGLQLIKDLNEYQDFI 646 (710)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----ccchhHHHHHHHHHHHHHHHHHHHH-----HhCccCchhHHHHHHHHHHHHHHH
Confidence 3334444556666666666554 3455565555555555444433333 246789999999999999999999
Q ss_pred cC
Q 001514 833 SG 834 (1063)
Q Consensus 833 ~~ 834 (1063)
..
T Consensus 647 ~~ 648 (710)
T PF07393_consen 647 RS 648 (710)
T ss_pred HH
Confidence 54
No 26
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=22.03 E-value=1.8e+02 Score=35.29 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=64.0
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhhc---Ccc-------hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 001514 27 FRTKPISEIRNVELTTKKQIQQKQEELRQLVG---TRY-------RDLIDSADSIVLMKSSCESISSNISSIHSHILSLS 96 (1063)
Q Consensus 27 F~~~ti~EIr~Iek~lr~eIe~KkeeLR~mVG---eRY-------RDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l~ 96 (1063)
|....++.|+++|+.++.++-.--..|+..|| .+| .|++++|.. .+|+...+-+...+.++-..+..+.
T Consensus 54 ~~~~d~~~i~eie~~t~HdV~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~-L~lk~a~~ii~~~l~~l~~~L~~~A 132 (438)
T COG0015 54 FAEFDLERIKEIEAETGHDVKALVRALAEKVGEEASEYVHFGATSQDIIDTALA-LQLKEALDLILPDLKRLIEALAELA 132 (438)
T ss_pred ccccCHHHHHHHHHHhCCCcHHHHHHHHHhcCcccccceecccchHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999 566 799999976 4789999999999999999998877
Q ss_pred cccc
Q 001514 97 LSAE 100 (1063)
Q Consensus 97 ~~~~ 100 (1063)
..++
T Consensus 133 ~~~k 136 (438)
T COG0015 133 LEHK 136 (438)
T ss_pred HHhC
Confidence 7764
Done!