Query 001514
Match_columns 1063
No_of_seqs 180 out of 206
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:14:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001514.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_816-820//hhsearch_pdb/001514hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 1.0 1 1 17.1 17.7 120 119-244 10-129 (235)
2 1e52_A Excinuclease ABC subuni 1.0 1 1 16.9 2.5 50 21-70 8-57 (63)
3 1fiu_A Type II restriction enz 1.0 1 1 15.5 -0.8 15 228-242 4-18 (286)
4 4dx8_H KREV interaction trappe 1.0 1 1 14.4 0.5 53 753-824 132-184 (203)
5 3fhn_A Protein transport prote 1.0 1 1 14.3 11.2 164 682-893 504-672 (706)
6 2a2f_X Exocyst complex compone 1.0 1 1 14.3 19.5 78 753-834 214-291 (325)
7 3n1e_A Vacuolar protein sortin 1.0 1 1 12.5 12.9 113 682-834 10-125 (141)
8 1t6f_A Geminin; coiled-coil, c 1.0 1 1 12.5 2.7 19 39-57 9-27 (37)
9 2c0s_A Conserved domain protei 1.0 1 1 12.2 2.4 21 40-61 4-24 (64)
10 4flb_A Regulation of nuclear P 1.0 1 1 11.7 -0.2 24 412-435 107-132 (132)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=17.14 Aligned_cols=120 Identities=22% Similarity=0.178 Sum_probs=86.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11334565201716888620168417999999999998898621343333465158999999998849999999998620
Q 001514 119 GIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLL 198 (1063)
Q Consensus 119 ~~aaqiKlL~d~PE~IW~~Le~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~fr~~Il~~~~~~L~ 198 (1063)
+..-.+|-+.+.|+.+=-+|-..+|-.|..+.-.++.....+..... -...+.+......+..-+.+|....-..|.
T Consensus 10 ~~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~---~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~ 86 (235)
T 2d2s_A 10 STAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERIS---DEELMLLNLISLKIEQRREAISSKLSQSIL 86 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41004788871629889999997699999999999999872844456---553678999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0698989999999999941299989999999999999999984589
Q 001514 199 DNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGN 244 (1063)
Q Consensus 199 ~~~~s~~~~~~aLaAl~Lle~ss~~q~L~~FL~~R~~ai~~~L~~~ 244 (1063)
. ......+..++..+.-|. -..++-..||+.|...|+....+.
T Consensus 87 ~-~~~~~~~r~~v~~L~rLg--~~~~A~~lfL~~rs~~i~~~~r~l 129 (235)
T 2d2s_A 87 S-SNEIVHLKSGTENMIKLG--LPEQALDLFLQNRSNFIQDLILQI 129 (235)
T ss_dssp T-CSSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred H-CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0-587799999999998879--816999999999999999998872
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=1.00 E-value=1 Score=16.94 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=39.9
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99777510199468999999999999999999998630750368863688
Q 001514 21 GDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADS 70 (1063)
Q Consensus 21 ~~~d~LF~~~ti~EIr~Iek~lr~eIE~KkeELR~mVGeRYRDLL~aADt 70 (1063)
-.||..|...+..++..+-+.++.++..-.++|.==--.+|||-|.+=..
T Consensus 8 ~~~~~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~ 57 (63)
T 1e52_A 8 LEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 57 (63)
T ss_dssp CCCTTSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 79640144359999999999999999999881589999999999999999
No 3
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=1.00 E-value=1 Score=15.51 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999845
Q 001514 228 LFLETRKTWILQTLG 242 (1063)
Q Consensus 228 ~FL~~R~~ai~~~L~ 242 (1063)
.|.+.|+..-..++.
T Consensus 4 ~l~~~R~~fH~~l~~ 18 (286)
T 1fiu_A 4 LFTQERRIFHKKLLD 18 (286)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799999999999862
No 4
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.36 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 489828999999999999997438767999999999999999999999875321100224300348899962
Q 001514 753 PSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFD 824 (1063)
Q Consensus 753 P~qpS~~vq~~L~~~c~ei~rvg~H~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfD 824 (1063)
|.+||+|-..=+..+|.|.+ +| .+ .+..+.+-+.++++.. +.++.-++|-||-
T Consensus 132 pg~PsfyclqdimrVcsE~s---~h-f~---------~~tsrMl~aLDkWl~e------qhs~phai~ALFR 184 (203)
T 4dx8_H 132 PGCPIFYCLQDIMRVCSESS---TH-FA---------TLTARMLIALDKWLDE------RHAQSHFIPALFR 184 (203)
T ss_dssp --CCEEEEHHHHHHHC-------CC-BC---------HHHHHHHHHHHHHHHH------HHHHSSHHHHHHS
T ss_pred CCCCCEEEHHHHHHHHHCCC---CC-CC---------HHHHHHHHHHHHHHHH------HCCCCCCHHHHCC
T ss_conf 99972533677888865135---55-32---------3578999999998887------5157632165438
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=14.27 Aligned_cols=164 Identities=15% Similarity=0.229 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEC-CCCCHH
Q ss_conf 79999999999999-9999999999998889842106666643344579963688877237898203699624-898289
Q 001514 682 LKELTRTTRDLCIR-AHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLP-SMPSLY 759 (1063)
Q Consensus 682 ~~~l~~~l~~~~~~-a~~~W~~~~~~~L~~~~~~~L~~d~~Ls~~~~~~~Wee~~i~ee~e~g~~v~s~IrlP-~qpS~~ 759 (1063)
.++.-..+..+... +...=+.++...+-..+...... ..|..+. +..++.+ .+ ..||.-
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~----------s~W~s~~---~~~~~~~------~~~lspSaE 564 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKI----------STWSTLE---MSVDENI------GPSSVPSAE 564 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHC----------CGGGTCC---CC------------CCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCCCC---CCCCCCC------CCCCCCCHH
T ss_conf 89999999999988899999999999999999877481----------6685667---8776665------556889888
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999974387679999999999999999999-9987532110022430034889996299688841499999
Q 001514 760 IISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGI-YRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSN 838 (1063)
Q Consensus 760 vq~~L~~~c~ei~rvg~H~Lpk~~lq~l~~~l~~~vl~~-Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~~~~~ 838 (1063)
+...|-.+-..++..--..||......+-..++..+-.. |+..+.. + +-++.|+.|+-+|+..|-.+|.-++.
T Consensus 565 L~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~---n--kFS~~Ga~Qf~~D~~~L~~v~~lp~~- 638 (706)
T 3fhn_A 565 LVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKL---N--KFNQNGLNQFLHDFKSLSSILSLPSH- 638 (706)
T ss_dssp GHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTT---S--CBCHHHHHHHHHHHHHHHTTSCCCTT-
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCCHHHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 99999999999999998137778999999999999999999999860---8--64888899999999999998568884-
Q ss_pred CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHH
Q ss_conf 876654620000000110233334566786999999974288876401113--4897
Q 001514 839 RNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYE--PYLR 893 (1063)
Q Consensus 839 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Le~~IDPfD~~vf~--p~L~ 893 (1063)
.. +. .-+++.+.+--|.=..||-- .-|. .|++
T Consensus 639 ----~~-----------------~~-~~~~L~E~l~LL~L~~d~~~-~~f~~~~y~~ 672 (706)
T 3fhn_A 639 ----AT-----------------NY-KCMSLHELVKILKLKYDPNN-QQFLNPEYIK 672 (706)
T ss_dssp ----CC-----------------CH-HHHHHHHHHHHHGGGGCGGG-TTTTSHHHHH
T ss_pred ----CH-----------------HH-HHHHHHHHHHHCCCCCCCCH-HHHHHHHHHC
T ss_conf ----14-----------------56-77999999998179887422-0677898870
No 6
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=14.27 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 48982899999999999999743876799999999999999999999987532110022430034889996299688841
Q 001514 753 PSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVL 832 (1063)
Q Consensus 753 P~qpS~~vq~~L~~~c~ei~rvg~H~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl 832 (1063)
|-.||-|++.+.-=+-.-++ + =-.||+.+.+...-..+..+-....+++-+ ....+++.+++-|+-.|++||....
T Consensus 214 ~~~ps~yi~dli~fL~~~f~-s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~--~~vk~in~~av~~~~~Dv~~lE~fa 289 (325)
T 2a2f_X 214 PGIASAFITDMISYLKSTFD-S-FAFKLPHIAQAACRRTFEHIAEKIYSIMYD--EDVKQISTGALTQINLDLMQCEFFA 289 (325)
T ss_dssp CCSCCHHHHHHHHHHHHHHH-T-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC--------CCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH-H-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99856899999999999999-9-873999999999999999999999998648--6114329999998999999999998
Q ss_pred CC
Q ss_conf 49
Q 001514 833 SG 834 (1063)
Q Consensus 833 ~~ 834 (1063)
..
T Consensus 290 ~~ 291 (325)
T 2a2f_X 290 AS 291 (325)
T ss_dssp TT
T ss_pred HH
T ss_conf 72
No 7
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=12.47 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHH
Q ss_conf 79999999999999999999999999888984210666664334457996368887723789820369962489828999
Q 001514 682 LKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYII 761 (1063)
Q Consensus 682 ~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~Ls~~~~~~~Wee~~i~ee~e~g~~v~s~IrlP~qpS~~vq 761 (1063)
.+.+.+.+.+-..+.|.--+...++.+..++. .||. . |..||+|..
T Consensus 10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~----------------~Wd~---------k---------~pvpS~~m~ 55 (141)
T 3n1e_A 10 FDHITKDYHDHIAEISAKLVAIMDSLFDKLLS----------------KYEV---------K---------APVPSPCFR 55 (141)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT----------------TCCC---------C---------SSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCC---------C---------CCCCCHHHH
T ss_conf 98999999999999999999999989999998----------------7255---------8---------998998999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHCC
Q ss_conf 99999999999743876799999999999999999999987532110022430034889---99629968884149
Q 001514 762 SFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQ---VLFDLRFSADVLSG 834 (1063)
Q Consensus 762 ~~L~~~c~ei~rvg~H~Lpk~~lq~l~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQ---lLfDlrfl~~vl~~ 834 (1063)
++ ..--..+|++..-.||...++.+ +..|+..|.+-+... .....++-++.-| ++-|+.|...-|-.
T Consensus 56 tl-~Ke~~kLH~~Ls~~LP~~~v~~I----m~~Vf~~fk~~l~~~-~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~ 125 (141)
T 3n1e_A 56 NI-CKQMTKMHEAIFDLLPEEQTQML----FLRINASYKLHLKKQ-LSHLNVINDGGPQNGLVTADVAFYTGNLQA 125 (141)
T ss_dssp HH-HHHHHHHHHHHTTTSCHHHHHHH----HHHHHHHHHHHHHHH-HHHTTCCSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHH-HHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99-99999999998832999999999----999999999999999-998688787763002789999999998624
No 8
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=1.00 E-value=1 Score=12.45 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999863
Q 001514 39 ELTTKKQIQQKQEELRQLV 57 (1063)
Q Consensus 39 ek~lr~eIE~KkeELR~mV 57 (1063)
.-+++.+||.|.+|.+.+-
T Consensus 9 NekLhk~ie~KdeeIa~Lk 27 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7899889998789999999
No 9
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=1.00 E-value=1 Score=12.24 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999998630750
Q 001514 40 LTTKKQIQQKQEELRQLVGTRY 61 (1063)
Q Consensus 40 k~lr~eIE~KkeELR~mVGeRY 61 (1063)
+++..+||.||++|-.++ .+|
T Consensus 4 ~~L~~~IE~kR~eL~~l~-~k~ 24 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLV-EKY 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHHHH-HHC
T ss_conf 999999999999999999-981
No 10
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=11.72 Aligned_cols=24 Identities=8% Similarity=0.646 Sum_probs=0.0
Q ss_pred CCHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 712999--859999999999999778
Q 001514 412 SDLWDE--IFEDAFVQRMKMIIDSGF 435 (1063)
Q Consensus 412 l~lW~~--lfq~lf~~R~k~Ii~~~f 435 (1063)
+++|++ +|.+-++++++..+..+|
T Consensus 107 l~iW~~r~vf~~~~i~~L~~~L~~s~ 132 (132)
T 4flb_A 107 FKIWEDRNVYPEEMIVALREALSTTF 132 (132)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHTSCC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99834689809999999999972649
Done!