BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001515
(1063 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 22/143 (15%)
Query: 577 KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA-LYSGEGWQDLLAEVLPNLAECQKILN 635
++ GV D E AAV D A K+Y + G+ + LA V +E QK N
Sbjct: 299 RKSGVATDAEKAAVDSTKSALDAAVKAYNDLTKEKQEGQDGKSALATV----SEKQKAYN 354
Query: 636 D---EAGYLL---------SCVRLLSLDKGLFS----TKERQAFQSEVISLAYGEMKDPV 679
D +A Y + V+L+S DKG F T+ + + + Y ++ V
Sbjct: 355 DAFVKANYSYEWVEDKNAKNVVKLISNDKGQFEITGLTEGQYSLEETQAPTGYAKLSGDV 414
Query: 680 PLDVSSLITFSGNPGPPLELCDG 702
+V++ ++S +E G
Sbjct: 415 SFNVNA-TSYSKGSAQDIEYTQG 436
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 572 HCSWWKR----HGVVLDGEIAA-VCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626
H WWK G GE+AA + G++D+ + G GW L + L N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGN 135
Query: 627 LAECQKILNDEAGYLLSCVRLLSLD 651
++ +++ + L V LL LD
Sbjct: 136 KLLIFQVYDEQTNFPLGIVPLLLLD 160
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 586 EIAAVCFKHGNYDQAAKSYEKVCAL------YSGEGWQDLLAEVLP---NLAECQKILND 636
E V FK G Y QA Y+K+ + +S E Q A L NLA C L
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211
Query: 637 EAGYLLSCVRLLSLD----KGLFSTKE 659
+ + SC + L LD KGLF E
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGE 238
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 572 HCSWWKR----HGVVLDGEIAA-VCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626
H WWK G GE+AA + G++D+ + G GW L + L N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGN 135
Query: 627 LAECQKILNDEAGYLLSCVRLLSLD 651
++ + + + L+ V LL LD
Sbjct: 136 KLLIFQVYDHQTNFPLAIVPLLLLD 160
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALY--S 612
E+ QK LEL A +W+ + +K G+YD+A + Y+K LY +
Sbjct: 30 EYYQKALELYPNNAE----AWYN---------LGNAYYKQGDYDEAIEYYQKALELYPNN 76
Query: 613 GEGWQDL 619
E W +L
Sbjct: 77 AEAWYNL 83
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 572 HCSWWKR----HGVVLDGEIAA-VCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626
H WWK G GE+AA + G++D+ + G GW L + L N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGN 135
Query: 627 LAECQKILNDEAGYLLSCVRLLSLD 651
++ + + + L V LL LD
Sbjct: 136 KLLIFQVYDQQTNFPLGIVPLLLLD 160
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 572 HCSWWKR----HGVVLDGEIAA-VCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626
H WWK G GE+AA + G++D+ + G GW L + L N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGN 135
Query: 627 LAECQKILNDEAGYLLSCVRLLSLD 651
++ + + + L V LL LD
Sbjct: 136 KLLIFQVYDHQTNFPLGIVPLLLLD 160
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 572 HCSWWKR----HGVVLDGEIAA-VCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626
H WWK G GE+AA + G++D+ + G GW L + L N
Sbjct: 76 HTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGCGWAALGWDTLGN 135
Query: 627 LAECQKILNDEAGYLLSCVRLLSLD 651
++ + + + L V LL LD
Sbjct: 136 KLLIFQVYDHQTNFPLGIVPLLLLD 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,202,009
Number of Sequences: 62578
Number of extensions: 1297022
Number of successful extensions: 2589
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2587
Number of HSP's gapped (non-prelim): 11
length of query: 1063
length of database: 14,973,337
effective HSP length: 109
effective length of query: 954
effective length of database: 8,152,335
effective search space: 7777327590
effective search space used: 7777327590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)