BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001515
(1063 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium
discoideum GN=trapcc10-1 PE=3 SV=1
Length = 1442
Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 41/384 (10%)
Query: 16 DRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSR 75
+ I I+ +D S +W I++ LP K KT + VEK+P E + D R+++
Sbjct: 96 EHITISYQDESSIWKYIEAELPNHLPLKNISWKTKTGHTKVVEKMPIEILQYNDERVKAH 155
Query: 76 FPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLK-LITQNDER--EWFIVFVSKAHP 132
+ + L +++PY + LV C+D D +K +++ ++K +TQ ER EW IV+VS
Sbjct: 156 YDNQNL---YKKPYLYLYLVHCDDPDTYKNVVRAKIKQWVTQMTERQQEWLIVYVSLGPK 212
Query: 133 N-NDQANKMAKKVFAKLEVDFNSKKRERCCKF---DIHGP-------------------- 168
++ +K+ + VF +++ DFN K R+RCC+ D +
Sbjct: 213 RFSELTSKLTRTVFDRIKNDFNVK-RDRCCQLRFLDTNNTSSGNNKDKDNDNGGGSSGTG 271
Query: 169 -------EPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKE 221
+ + W+D K+ E I ++ ++ + +EDEIRK+ R P W++ NFF +KE
Sbjct: 272 LSTSTKQQDDLWDDFLIKMKEGIISSAEQYLTTYEDEIRKMDAKRTTPGWSYQNFFFIKE 331
Query: 222 SLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAALLNPGNK 278
LA ++E A L+EDAL +Y ELE+ + + N + + V + + +L+ K
Sbjct: 332 GLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNILDTSFK 391
Query: 279 ALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILP 338
+++ ++ F+F+ YLFA QSKLLF L +P E A++ FI S S + Q+ +
Sbjct: 392 NYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQYPNSFA 451
Query: 339 FCMREVWVITACLALIDATSSQYN 362
+E W+ + + LI A ++
Sbjct: 452 PMFKESWIFSTSMELIKACQDSFD 475
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 20/322 (6%)
Query: 549 SLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVC 608
SL S ++F Q Y EL Y S R L IA + FK + A ++ +
Sbjct: 694 SLQSSKQFTQLYFELLGQIEKLYIQSNRMRSISRLTFAIANLNFKLKEFQIAENLFKSIS 753
Query: 609 ALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTK-ERQAFQSEV 667
LYS E W + V L+ CQK L Y+ +CV LL+ GL + + E+ + SE+
Sbjct: 754 NLYSREHWSYIEYAVKTRLSYCQKQLGHLVDYVTTCVGLLA--PGLLTNRFEKDHYLSEI 811
Query: 668 ISLA----YGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDT 723
I ++ ++ +PL +TF E ++V + S I +
Sbjct: 812 IQISRKPELNIVQPMIPL-FKCKVTFKETVYRYFETIK-----INVRIKSNLISPIRFNN 865
Query: 724 LSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFR 783
+++ + + D+ LN +++PG N ++V ++ I L F
Sbjct: 866 GAVSFVKSGFGDKLVFQLND---FLVEPGVNNFQFTAVGTTKATFVKDSIWLKIDNLSF- 921
Query: 784 SHSFSKVGPADSDDFMSYEKPTRPI---LKVFNPRPLVDLAAAISSPLLINEAQWVGIIV 840
+S A T + +KV + + L + +SPLL Q+VGI +
Sbjct: 922 GYSLRNADTAIGGGGGGTNTTTTTLPGEIKVIDSESQITLESFANSPLLFYSIQYVGIKL 981
Query: 841 QPIDYSLKGAILQIDTGPGLTI 862
+++ +L + G TI
Sbjct: 982 HTHSDTIEAGVLTFTSPTGATI 1003
>sp|Q3TLI0|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus
GN=Trappc10 PE=2 SV=2
Length = 1259
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 20/325 (6%)
Query: 88 PYATVVLVTCEDLDEFKTILKPRL----KLITQNDEREWFIVFVSKAHPNNDQANKMAK- 142
P+ + C D + +K +K L ++ + +W IV V ++ N + +
Sbjct: 85 PFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVVVENDAKKKNKTNILPRT 144
Query: 143 KVFAKLEVDFNSKKRERCC----KFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDE 198
+ K+ DF +K+ +RC W +K+ + + + + FED+
Sbjct: 145 SIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDD 204
Query: 199 IRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHK 258
+R L E R P W+FC +F+++E LAF+FEM EDAL +YDEL+ + + V G
Sbjct: 205 MRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGD 264
Query: 259 E------FGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRP 312
F + + L P + E++Q + R YLF+ Q LL L RP
Sbjct: 265 GANWLTFFCQPVKSWNGLVLRKPIDMEKRELIQKQEATLLDLRSYLFSRQCTLLLFLQRP 324
Query: 313 FEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEK 372
+EVA R + S + L E +P + WV +CL ++ + I+
Sbjct: 325 WEVAQRALELLHSCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRA----QIDS 380
Query: 373 EFYRLLGDLYSLCRIKFMRLAYLIG 397
++G L+S K L YL G
Sbjct: 381 NIAHMVG-LWSYAMEKLKSLGYLCG 404
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 546 LLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYE 605
L ++LSSVE FE+ YL+L+ Y R ++ ++A + + +A +
Sbjct: 444 LQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYLQ 503
Query: 606 KVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQS 665
Y EGW + LAECQK L YL + LL+ D L + +ER+ F
Sbjct: 504 GALKNYLAEGWALPVTHTRKQLAECQKHLGQMENYLQTS-SLLASDHHL-TEEERKYFCQ 561
Query: 666 EVISLAYGEMKDPVPLDVSSLITFSG----NPGPPLELCD-GDPGTLSVTVWSGFPDDIT 720
E++S A + +P V + +F+ + PP + G T+ +TV S P +
Sbjct: 562 EILSFASQQEDNPGHKVVLPMHSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPIPVH 621
Query: 721 VDTLSLTL 728
VD +++ +
Sbjct: 622 VDQIAVNV 629
>sp|P48553|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens
GN=TRAPPC10 PE=1 SV=2
Length = 1259
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 140/326 (42%), Gaps = 22/326 (6%)
Query: 88 PYATVVLVTCEDLDEFKTILKPRL----KLITQNDEREWFIVFVSKAHPNNDQANKMAK- 142
P+ + C D + +K +K L ++ + +W IV V ++ N + +
Sbjct: 85 PFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVIVENDAKKKNKTNILPRT 144
Query: 143 KVFAKLEVDFNSKKRERCC----KFDIHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDE 198
+ K+ DF +K+ +RC W +K+ + + + + FED+
Sbjct: 145 SIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDD 204
Query: 199 IRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHK 258
+R L E R P W+FC +F+++E LAF+FEM EDAL +YDEL+ + + V G
Sbjct: 205 MRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGD 264
Query: 259 E------FGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRP 312
F + + L P + E +Q + R YLF+ Q LL L RP
Sbjct: 265 GANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRREATLLDLRSYLFSRQCTLLLFLQRP 324
Query: 313 FEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLA-APDIE 371
+EVA R + + + L E +P + WV +CL ++ Q +G I+
Sbjct: 325 WEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFLSCLEVL-----QRIEGCCDRAQID 379
Query: 372 KEFYRLLGDLYSLCRIKFMRLAYLIG 397
+G L+S K L YL G
Sbjct: 380 SNIAHTVG-LWSYATEKLKSLGYLCG 404
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 546 LLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYE 605
L ++LSSVE FE+ YL+L+ Y R + ++A + +A +
Sbjct: 444 LKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYLQ 503
Query: 606 KVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQS 665
Y EGW + LAECQK L YL + LL+ D L + +ER+ F
Sbjct: 504 GALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTS-SLLASDHHL-TEEERKHFCQ 561
Query: 666 EVISLA 671
E++ A
Sbjct: 562 EILDFA 567
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 725 SLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRS 784
SL + + +EGA L S T L+PG N IT ++PG+Y L L +G + F
Sbjct: 711 SLEMPSGVALEEGAHVLRCSHVT-LEPGANQITFRTQAKEPGTYTLRQLCASVGSVWF-- 767
Query: 785 HSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPID 844
+ P D S E P L V PL D LL Q V V
Sbjct: 768 -VLPHIYPIVQYDVYSQE----PQLHV---EPLAD-------SLLAGIPQRVKFTVTTGH 812
Query: 845 YSLK-GAILQIDTGPGLTI 862
Y++K G LQ+ + I
Sbjct: 813 YTIKNGDSLQLSNAEAMLI 831
>sp|Q9VFB7|TPC10_DROME Trafficking protein particle complex subunit 10 OS=Drosophila
melanogaster GN=SIDL PE=1 SV=1
Length = 1145
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 18/257 (7%)
Query: 85 FREPYATVVLVTCEDLDEFKTILKPR----LKLITQNDEREWFIVFVSKAHPNNDQANKM 140
P + + C D+D +K ++ LK +T +W I+ V +
Sbjct: 70 LEHPILHIFVTECNDVDTYKATIREAIDIWLKTLTSYGVSDWMILLVETLDMRKTKNFMP 129
Query: 141 AKKVFAKLEVDFNSKKRERC------CKFDIHGPEPNFWEDLESKVMESIRNTLDRRVQF 194
V K+ +DF +K +RC KF+ E + L ++ + + +R +
Sbjct: 130 RTTVLDKIRLDFGTKNDDRCISVLNPAKFEQKSTES--FRCLVQRIRFLMLTSYNRNIVK 187
Query: 195 FEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVN-- 252
+E+ IR E R + W+F +F ++E LA +FE L +AL +YDEL+ + + +
Sbjct: 188 YEELIRSKREKRNIEGWDFRQYFFMQEDLALIFEKLELPTEALIQYDELDAMFSQFITHT 247
Query: 253 -MNGKHKEFGGVERGDD--EAALLNPGNK-ALTEIVQDDSFREFEFRQYLFACQSKLLFK 308
+N K + + D L +K + ++D+ EFR YLF Q+ LL
Sbjct: 248 GLNEKQQWLNHFRKPLDAFHGICLTRADKFEMRNKIRDEGVSLLEFRNYLFERQAYLLLT 307
Query: 309 LNRPFEVASRGYPFIIS 325
N E+A R F+ S
Sbjct: 308 CNDIPEIAKRLLNFLFS 324
>sp|O74501|YCRE_SCHPO Uncharacterized protein CC285.14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC285.14 PE=3 SV=1
Length = 1150
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 51/259 (19%)
Query: 19 VIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQ 78
++ D DLWP+I + E ++P RN +VE + T L
Sbjct: 7 IVQYYDPFDLWPSIATDIESKIPL---------RNLQWVESYQYKKHTITSLDL------ 51
Query: 79 EQLLFWFRE---------------PYATVVLVTCEDLDEFKTILKPR----LKLITQNDE 119
+ L W E P ++ + +D + +KT KP + +++N+
Sbjct: 52 -EFLPWLEEFSSQDTSKDPTLLNIPLVNMLFLPEQDGEIYKTQHKPLATKWFQKVSKNEN 110
Query: 120 REWFIVFVSKAHPNNDQANKM------------AKKVFAKLEVDFNSKKRERCCKFD--- 164
+ W IV V++A ++N + K ++ DFN+ C + D
Sbjct: 111 QSWMIVLVAEAQ-QAKRSNSLRRTHSRSSSYFAVKSTIDRVRGDFNTGNINHCVRLDYVR 169
Query: 165 IHGPEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLA 224
P+ W + + ++ ++LD R ++IR + ++ FF+ KE LA
Sbjct: 170 FGTPDAEGWNEFLKCLEWAVLSSLDSRFLQLSEQIRSIKLFDSSIFSDYLLFFLQKERLA 229
Query: 225 FMFEMAHLHEDALREYDEL 243
F L+ ++L + +++
Sbjct: 230 ASFFDLVLYRESLEQCEDM 248
>sp|P10202|VP23_HHV11 Triplex capsid protein VP23 OS=Human herpesvirus 1 (strain 17)
GN=UL18 PE=1 SV=1
Length = 318
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 680 PLDVSSLITFSGNPG----PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTL 728
PLDV +T +G P++LC+GDP +L V+ G D+ +D+L LTL
Sbjct: 87 PLDVG--LTHAGTVNLRNTSPVDLCNGDPISLVPPVFEGQATDVRLDSLDLTL 137
>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus
GN=Fkbp4 PE=1 SV=3
Length = 458
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 586 EIAAVCFKHGNYDQAAKSYEKVCAL------YSGEGWQDLLAEVLP---NLAECQKILND 636
E V FK G Y QA Y+K+ + +SGE Q + A L NLA C L
Sbjct: 275 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQA 334
Query: 637 EAGYLLSCVRLLSLD----KGLFSTKE 659
+ + SC + L LD KGLF E
Sbjct: 335 FSAAIESCNKALELDSNNEKGLFRRGE 361
>sp|P89441|VP23_HHV2H Triplex capsid protein VP23 OS=Human herpesvirus 2 (strain HG52)
GN=UL18 PE=3 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 678 PVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTL 728
PV L ++ T + P++LC+GDP +L V+ G D+ +++L LTL
Sbjct: 87 PVDLGLTHAGTVNLRNTSPVDLCNGDPVSLVPPVFEGQATDVRLESLDLTL 137
>sp|A8GHZ8|ABDH_SERP5 Gamma-aminobutyraldehyde dehydrogenase OS=Serratia proteamaculans
(strain 568) GN=prr PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 31/133 (23%)
Query: 383 SLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKP---PVWPLVPADASAEVLAKEK 439
S C YL GH + I R P+ + S+ PW P W L PA A+ +
Sbjct: 115 SRCLSGLAAGEYLAGHTSMIRRDPLGVVA-SIAPWNYPLMMAAWKLAPALAAGNCVV--- 170
Query: 440 LILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAG----NMFEIFDGSGPDVSLR 495
L+PS + A L+AG + + G G V R
Sbjct: 171 --------------------LKPSEQTPLTTFKLAELAAGLFPPGVLNVLFGRGASVGDR 210
Query: 496 MSPSNKVQAVSMS 508
++ NKV+ VS++
Sbjct: 211 LTGHNKVRMVSLT 223
>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4
PE=1 SV=5
Length = 458
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 586 EIAAVCFKHGNYDQAAKSYEKVCAL------YSGEGWQDLLAEVLP---NLAECQKILND 636
E FK G Y QA Y+K+ + +SGE Q + A L NLA C L
Sbjct: 275 ERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQA 334
Query: 637 EAGYLLSCVRLLSLD----KGLFSTKE 659
+ + SC + L LD KGLF E
Sbjct: 335 FSAAIESCNKALELDSNNEKGLFRRGE 361
>sp|Q9UZP8|GCST_PYRAB Probable aminomethyltransferase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=gcvT PE=3 SV=1
Length = 398
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 30/192 (15%)
Query: 188 LDRRVQFFE---DEIRKLSELRF--MPVWNFCNFFILKESLAF-----MFEMAHLHEDAL 237
+ +RV F+ + +K+ E MP+W I +E LA +F+++H+ E
Sbjct: 1 MAKRVHLFDWHKEHAKKIEEFAGWEMPIWYSS---IKEEHLAVRNAVGLFDVSHMGEIYF 57
Query: 238 REYDELELCYLETVNMNGKHKEFGGV------ERG--DDEAALLNPGNKALTEIVQDDSF 289
R D L+ T N K G+ ERG DE + N GN I D+F
Sbjct: 58 RGKDALKFLQYVTTNDISKPPAISGIYTLVLNERGAIKDETLIFNMGNNEYLMICDSDAF 117
Query: 290 RE----FEFRQYLFACQSKLLFKLN-RPFEVASRGYPFIISFSKALAQHEDILPFCMREV 344
+ F + + +KL ++ + +++A F + KA D+ + E+
Sbjct: 118 EKLYAWFTYLKKTIEQFTKLDLEIELKTYDIAM----FAVQGPKARDLARDLFGIDINEM 173
Query: 345 WVITACLALIDA 356
W A +D
Sbjct: 174 WWFQARWVELDG 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,766,846
Number of Sequences: 539616
Number of extensions: 17273144
Number of successful extensions: 37559
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 37532
Number of HSP's gapped (non-prelim): 28
length of query: 1063
length of database: 191,569,459
effective HSP length: 128
effective length of query: 935
effective length of database: 122,498,611
effective search space: 114536201285
effective search space used: 114536201285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)