Query 001515
Match_columns 1063
No_of_seqs 204 out of 255
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1931 Putative transmembrane 100.0 9E-109 2E-113 975.6 42.3 881 9-1057 1-981 (1156)
2 KOG4386 Uncharacterized conser 99.9 2.1E-24 4.6E-29 241.0 -6.1 460 561-1057 115-651 (809)
3 PF07919 Gryzun: Gryzun, putat 99.5 8E-12 1.7E-16 152.8 30.3 322 699-1051 23-418 (554)
4 PF11817 Foie-gras_1: Foie gra 99.4 1E-12 2.3E-17 144.2 11.9 99 551-649 148-246 (247)
5 PF08626 TRAPPC9-Trs120: Trans 97.6 0.14 3.1E-06 68.6 38.4 279 567-855 451-823 (1185)
6 PF06159 DUF974: Protein of un 97.3 0.019 4E-07 63.5 19.1 170 826-1056 8-210 (249)
7 PF14938 SNAP: Soluble NSF att 95.8 0.078 1.7E-06 59.7 12.0 88 561-648 94-182 (282)
8 PF13424 TPR_12: Tetratricopep 93.7 0.35 7.5E-06 42.8 8.2 66 582-647 6-75 (78)
9 KOG1953 Targeting complex (TRA 93.1 11 0.00024 48.2 22.0 223 616-845 557-841 (1235)
10 PRK10803 tol-pal system protei 91.9 0.81 1.8E-05 51.1 9.8 72 579-653 178-249 (263)
11 PF12688 TPR_5: Tetratrico pep 88.2 3.1 6.6E-05 40.9 9.2 83 564-649 17-103 (120)
12 KOG1586 Protein required for f 87.3 1.7 3.7E-05 47.1 7.2 61 562-622 94-155 (288)
13 PF13424 TPR_12: Tetratricopep 86.8 1.3 2.9E-05 39.0 5.4 50 563-612 27-77 (78)
14 PF13176 TPR_7: Tetratricopept 86.7 1.2 2.6E-05 33.8 4.3 28 585-612 3-30 (36)
15 PF13432 TPR_16: Tetratricopep 86.4 2.3 5E-05 36.1 6.5 58 586-649 2-59 (65)
16 TIGR02795 tol_pal_ybgF tol-pal 85.6 4.9 0.00011 37.7 9.0 67 582-651 40-106 (119)
17 PF14559 TPR_19: Tetratricopep 84.7 0.75 1.6E-05 39.4 2.6 55 565-619 8-64 (68)
18 PF13414 TPR_11: TPR repeat; P 84.7 1.9 4.1E-05 37.0 5.2 60 583-648 5-65 (69)
19 COG1729 Uncharacterized protei 84.4 5.1 0.00011 44.5 9.4 87 564-653 160-247 (262)
20 PF14938 SNAP: Soluble NSF att 83.9 9.6 0.00021 42.8 11.8 110 563-673 137-247 (282)
21 KOG1931 Putative transmembrane 83.4 0.28 6.1E-06 62.1 -0.9 233 542-783 408-653 (1156)
22 PF12895 Apc3: Anaphase-promot 82.5 1.9 4.2E-05 38.8 4.5 54 584-644 28-81 (84)
23 PF13174 TPR_6: Tetratricopept 82.4 1.7 3.7E-05 31.4 3.4 30 584-613 3-32 (33)
24 cd00189 TPR Tetratricopeptide 82.2 5.4 0.00012 34.0 7.2 55 582-642 35-89 (100)
25 PF07719 TPR_2: Tetratricopept 81.1 2.5 5.4E-05 30.8 3.9 29 584-612 4-32 (34)
26 PF13374 TPR_10: Tetratricopep 80.8 2.9 6.2E-05 31.8 4.3 31 583-613 4-34 (42)
27 COG2956 Predicted N-acetylgluc 76.0 18 0.0004 41.2 10.2 83 553-647 193-275 (389)
28 PF00515 TPR_1: Tetratricopept 75.9 5 0.00011 29.4 4.2 29 583-611 3-31 (34)
29 cd00189 TPR Tetratricopeptide 73.4 10 0.00022 32.3 6.3 59 584-648 3-61 (100)
30 PF12862 Apc5: Anaphase-promot 73.3 19 0.00041 33.5 8.3 51 582-632 42-92 (94)
31 PF13181 TPR_8: Tetratricopept 70.8 8.2 0.00018 28.1 4.3 30 583-612 3-32 (34)
32 PF13432 TPR_16: Tetratricopep 70.0 9.9 0.00021 32.1 5.2 48 564-611 13-61 (65)
33 PF13371 TPR_9: Tetratricopept 67.1 16 0.00034 31.5 6.0 57 587-649 1-57 (73)
34 PF13525 YfiO: Outer membrane 66.9 11 0.00024 40.2 6.0 90 544-638 104-195 (203)
35 TIGR03302 OM_YfiO outer membra 64.9 19 0.00041 38.7 7.4 60 585-647 170-229 (235)
36 smart00028 TPR Tetratricopepti 63.6 9.3 0.0002 25.7 3.2 27 584-610 4-30 (34)
37 TIGR02552 LcrH_SycD type III s 62.6 52 0.0011 31.8 9.4 61 582-648 52-112 (135)
38 KOG2002 TPR-containing nuclear 62.1 56 0.0012 42.3 11.3 74 561-636 433-511 (1018)
39 PF14559 TPR_19: Tetratricopep 61.5 19 0.00041 30.5 5.4 53 592-650 2-54 (68)
40 COG1470 Predicted membrane pro 59.9 3.9E+02 0.0084 32.4 19.1 136 701-863 282-429 (513)
41 PF13371 TPR_9: Tetratricopept 58.9 15 0.00033 31.6 4.4 31 582-612 30-60 (73)
42 PF09976 TPR_21: Tetratricopep 58.0 59 0.0013 32.4 9.1 65 576-643 43-107 (145)
43 PF12739 TRAPPC-Trs85: ER-Golg 56.7 26 0.00057 41.8 7.3 61 576-637 203-264 (414)
44 PLN03088 SGT1, suppressor of 56.7 71 0.0015 37.3 10.7 78 566-649 20-98 (356)
45 PF13414 TPR_11: TPR repeat; P 56.5 16 0.00035 31.1 4.1 46 564-609 19-66 (69)
46 PF13428 TPR_14: Tetratricopep 55.9 17 0.00038 28.5 3.8 32 584-615 4-35 (44)
47 PRK10866 outer membrane biogen 55.7 34 0.00074 37.8 7.4 96 545-645 139-236 (243)
48 KOG1840 Kinesin light chain [C 55.5 99 0.0021 38.0 11.8 105 544-649 287-398 (508)
49 PF04781 DUF627: Protein of un 55.4 58 0.0013 31.6 7.9 65 587-651 2-70 (111)
50 PF13525 YfiO: Outer membrane 55.0 57 0.0012 34.7 8.8 52 565-616 22-77 (203)
51 TIGR02795 tol_pal_ybgF tol-pal 54.6 53 0.0011 30.5 7.7 63 584-649 5-67 (119)
52 PF07720 TPR_3: Tetratricopept 50.1 27 0.00059 26.8 3.9 20 586-605 6-25 (36)
53 PRK02603 photosystem I assembl 49.6 1.3E+02 0.0028 30.9 10.2 68 564-637 51-122 (172)
54 PRK10866 outer membrane biogen 47.2 29 0.00064 38.2 5.2 55 578-635 66-120 (243)
55 PF10602 RPN7: 26S proteasome 47.1 29 0.00062 36.4 4.9 47 568-614 23-69 (177)
56 PF12862 Apc5: Anaphase-promot 46.8 78 0.0017 29.3 7.3 60 590-649 7-69 (94)
57 TIGR02521 type_IV_pilW type IV 46.6 91 0.002 32.1 8.7 26 584-609 102-127 (234)
58 TIGR02521 type_IV_pilW type IV 46.3 83 0.0018 32.4 8.4 52 582-639 66-117 (234)
59 PRK15359 type III secretion sy 46.1 1.9E+02 0.0042 28.9 10.6 80 565-650 41-121 (144)
60 KOG1840 Kinesin light chain [C 44.8 96 0.0021 38.1 9.4 87 562-648 388-477 (508)
61 TIGR03504 FimV_Cterm FimV C-te 44.0 32 0.0007 27.7 3.6 25 585-609 3-27 (44)
62 KOG1155 Anaphase-promoting com 43.4 2.3E+02 0.005 34.2 11.7 115 544-669 432-552 (559)
63 PF09986 DUF2225: Uncharacteri 43.2 86 0.0019 34.0 7.9 35 581-615 165-199 (214)
64 PF14853 Fis1_TPR_C: Fis1 C-te 42.7 32 0.00069 28.8 3.5 27 584-610 4-30 (53)
65 PRK02603 photosystem I assembl 42.4 75 0.0016 32.6 7.2 57 583-642 37-93 (172)
66 KOG2076 RNA polymerase III tra 42.0 61 0.0013 41.5 7.3 87 563-650 464-555 (895)
67 PF07721 TPR_4: Tetratricopept 40.3 42 0.0009 23.4 3.3 23 583-605 3-25 (26)
68 TIGR03302 OM_YfiO outer membra 40.0 89 0.0019 33.5 7.6 67 564-633 49-119 (235)
69 TIGR02552 LcrH_SycD type III s 39.9 1E+02 0.0022 29.7 7.3 52 582-639 18-69 (135)
70 PF09976 TPR_21: Tetratricopep 39.3 91 0.002 31.1 7.0 52 582-640 86-137 (145)
71 KOG0543 FKBP-type peptidyl-pro 38.8 56 0.0012 38.5 5.9 67 585-651 212-287 (397)
72 KOG1585 Protein required for f 38.0 2.2E+02 0.0048 31.7 9.8 84 561-648 91-174 (308)
73 cd02680 MIT_calpain7_2 MIT: do 37.5 66 0.0014 29.0 4.9 39 589-627 14-52 (75)
74 PF13174 TPR_6: Tetratricopept 36.6 43 0.00092 23.8 3.1 27 221-247 4-30 (33)
75 PF12895 Apc3: Anaphase-promot 36.4 50 0.0011 29.5 4.2 25 582-606 59-83 (84)
76 KOG2758 Translation initiation 35.5 1.1E+02 0.0023 35.2 7.1 101 536-643 91-199 (432)
77 PF04190 DUF410: Protein of un 35.5 1.3E+02 0.0029 33.5 8.2 77 593-671 2-80 (260)
78 PLN03098 LPA1 LOW PSII ACCUMUL 35.3 78 0.0017 38.0 6.5 48 563-610 90-141 (453)
79 TIGR00990 3a0801s09 mitochondr 34.1 1.5E+02 0.0033 37.2 9.3 73 564-642 415-488 (615)
80 KOG0547 Translocase of outer m 33.3 1.1E+02 0.0023 37.1 7.0 59 585-649 119-177 (606)
81 PF13176 TPR_7: Tetratricopept 31.7 54 0.0012 24.6 3.0 24 221-244 3-26 (36)
82 KOG2076 RNA polymerase III tra 31.2 1.4E+02 0.003 38.5 7.9 55 583-642 416-470 (895)
83 PF13429 TPR_15: Tetratricopep 30.9 83 0.0018 34.9 5.7 71 565-643 200-270 (280)
84 KOG2908 26S proteasome regulat 30.9 5.8E+02 0.012 29.8 11.9 98 562-662 96-199 (380)
85 PRK11788 tetratricopeptide rep 30.9 2.2E+02 0.0047 32.9 9.4 58 585-648 184-241 (389)
86 PF10300 DUF3808: Protein of u 29.7 1.9E+02 0.004 35.3 8.7 69 563-637 282-356 (468)
87 PF05843 Suf: Suppressor of fo 29.6 6.4E+02 0.014 28.3 12.5 96 565-670 18-116 (280)
88 PF12690 BsuPI: Intracellular 29.4 4.3E+02 0.0094 24.1 9.0 63 705-771 2-81 (82)
89 CHL00033 ycf3 photosystem I as 29.4 2.3E+02 0.005 28.8 8.2 32 583-614 74-105 (168)
90 PRK11788 tetratricopeptide rep 29.0 2.2E+02 0.0048 32.8 9.1 61 171-242 34-94 (389)
91 TIGR00990 3a0801s09 mitochondr 28.9 1.3E+02 0.0028 37.8 7.4 70 564-639 143-212 (615)
92 KOG0545 Aryl-hydrocarbon recep 28.2 89 0.0019 34.6 4.9 112 540-652 131-261 (329)
93 CHL00033 ycf3 photosystem I as 26.9 1.9E+02 0.0041 29.4 7.1 64 583-649 37-100 (168)
94 TIGR02917 PEP_TPR_lipo putativ 26.6 1.7E+02 0.0036 37.3 8.1 26 584-610 807-832 (899)
95 TIGR02917 PEP_TPR_lipo putativ 26.5 2E+02 0.0044 36.5 8.8 60 583-649 705-764 (899)
96 cd05804 StaR_like StaR_like; a 26.4 2.3E+02 0.005 32.2 8.4 61 582-644 149-209 (355)
97 cd02681 MIT_calpain7_1 MIT: do 24.9 2E+02 0.0043 26.1 5.8 31 584-614 9-39 (76)
98 TIGR03504 FimV_Cterm FimV C-te 24.8 86 0.0019 25.3 3.1 26 220-245 2-27 (44)
99 KOG1126 DNA-binding cell divis 24.7 2.3E+02 0.005 35.5 8.0 85 545-629 315-411 (638)
100 PF13374 TPR_10: Tetratricopep 23.4 96 0.0021 23.1 3.2 28 220-247 5-32 (42)
101 PF13428 TPR_14: Tetratricopep 22.6 1.2E+02 0.0026 23.7 3.6 27 220-246 4-30 (44)
102 PF13512 TPR_18: Tetratricopep 22.5 1.7E+02 0.0036 29.9 5.4 40 576-615 42-81 (142)
103 KOG2002 TPR-containing nuclear 22.4 2E+02 0.0043 37.6 7.1 71 542-614 268-340 (1018)
104 PF03704 BTAD: Bacterial trans 22.1 4.9E+02 0.011 25.5 8.9 48 584-637 65-112 (146)
105 PF07919 Gryzun: Gryzun, putat 22.0 7.2E+02 0.016 30.5 12.1 145 702-859 355-512 (554)
106 PF07705 CARDB: CARDB; InterP 21.5 4.9E+02 0.011 23.4 8.2 64 698-770 14-79 (101)
107 PRK10370 formate-dependent nit 21.4 1.3E+02 0.0029 31.9 4.8 49 565-613 127-176 (198)
108 PF04733 Coatomer_E: Coatomer 21.0 2.6E+02 0.0056 31.8 7.3 53 581-639 201-253 (290)
109 PF10366 Vps39_1: Vacuolar sor 20.9 88 0.0019 30.1 3.0 27 584-610 42-68 (108)
110 PRK15359 type III secretion sy 20.6 2.3E+02 0.0051 28.3 6.1 62 564-625 74-137 (144)
111 PF03704 BTAD: Bacterial trans 20.4 3.3E+02 0.0072 26.8 7.2 61 553-613 54-128 (146)
112 KOG3081 Vesicle coat complex C 20.2 2.9E+02 0.0062 31.2 6.9 55 582-642 208-262 (299)
No 1
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=100.00 E-value=8.6e-109 Score=975.63 Aligned_cols=881 Identities=28% Similarity=0.370 Sum_probs=678.3
Q ss_pred hhccccCCeeEEEEeCCCCChHHHHHHHHhhCCCCceeeecCCCCCceeeeeeeeEEEccchhhccCCCcccccccccCc
Q 001515 9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP 88 (1063)
Q Consensus 9 ~~~~~~~~~v~i~y~Dp~~lf~~i~~~l~~~lPl~nlhWk~~~~~~~~i~~L~v~fv~~~~~~~~~~~p~~~~~~l~~~P 88 (1063)
|.|+++|++.+|.|+||++||++|+++|++++||+|+||++++|+.++..+||++|+|+.++.+.+ .+.+.+.++..|
T Consensus 1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~--~~~~d~sll~~P 78 (1156)
T KOG1931|consen 1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQ--DKSGDKSLLEFP 78 (1156)
T ss_pred CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhccc--cccCCchhhhCc
Confidence 579999999999999999999999999999999999999988887777667999999999988753 345678899999
Q ss_pred eEEEEEEecCChHHHHHcchHHHHhhhc----CCCCceEEEEEcCCC-CCchhhhhhhHHHHHHHhhhcCCCCCceEEEe
Q 001515 89 YATVVLVTCEDLDEFKTILKPRLKLITQ----NDEREWFIVFVSKAH-PNNDQANKMAKKVFAKLEVDFNSKKRERCCKF 163 (1063)
Q Consensus 89 ~l~i~~v~C~d~d~Yks~vR~~ik~w~~----~~~~eWlIv~v~~~~-~~~~~~~k~~~svldKik~DF~~~~~dRc~~l 163 (1063)
|+||+||.|.|+|+||++|||+++.|++ ++.++||||+|..++ +++++...-.+||+||||.||++|+.|||+.|
T Consensus 79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l 158 (1156)
T KOG1931|consen 79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL 158 (1156)
T ss_pred eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence 9999999999999999999999999987 689999999999653 33443223346999999999999999999999
Q ss_pred ccCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 001515 164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240 (1063)
Q Consensus 164 ~~~~---~~~e~W~~li~klK~~iL~sFd~rv~~yee~ir~~~~~r~~p~WnF~~~FilKE~LA~~fe~~~L~edAL~~Y 240 (1063)
+.+. +++|+||+|++|||.++|++||+|+.+|||+||.++++|++||||||+||++||+||++|||++|+||||.||
T Consensus 159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy 238 (1156)
T KOG1931|consen 159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY 238 (1156)
T ss_pred ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7642 3457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cc-CC-cccCCCCCCCCCc---cccCCCCChhhHHhhhcCCCchhhhHhhHHHHHHHHHHhhCChHH
Q 001515 241 DELELCYLETVN-MN-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE 314 (1063)
Q Consensus 241 dEL~~~~~~~~~-~~-~~-~~~f~~~~~~dd~---~~~l~~~~k~~r~li~~~~islfdfr~YlFsrQ~~LL~~l~~~~e 314 (1063)
|||+++|++.+. .+ |+ +.|||+++.+||. +.++-+++++.++.|+++.+++|+||.|||+||+.||++++|++|
T Consensus 239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e 318 (1156)
T KOG1931|consen 239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE 318 (1156)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence 999999999995 44 23 7999999988885 678889999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHhhcccCCCCCCCchhHHHHhhhhhHHHHHHHHHHHHHH
Q 001515 315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY 394 (1063)
Q Consensus 315 v~~r~~~fi~~~~~~l~~~e~~l~~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~a~~~l~~l~~ 394 (1063)
||+|+++|+.++++.+..++.+++.+++.||+|.+|+++++.|.. .+-..|+..+++-++++++|++|+.+|+++|.
T Consensus 319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~ 395 (1156)
T KOG1931|consen 319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL 395 (1156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999982 23345666678899999999999999999999
Q ss_pred HhcCCCCCCCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCcccccccCCCCCCCCchHHHHHHHHhhh
Q 001515 395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA 474 (1063)
Q Consensus 395 ~~g~~~~~~~~p~rssSl~~~~~p~p~~~p~~p~~~~~~~l~~~~~~~~~~~~s~~~~~~R~eL~~~~r~lLee~~~rr~ 474 (1063)
.||..++. . |. -.+++++. - .
T Consensus 396 ~~~li~d~------------~--p~----------~~se~l~~--------------------------~---------~ 416 (1156)
T KOG1931|consen 396 LCGLIPDS------------D--PN----------YKSEQLKE--------------------------T---------F 416 (1156)
T ss_pred HhccCCCC------------C--CC----------ccccccce--------------------------E---------e
Confidence 99996652 0 10 01222210 0 0
Q ss_pred hhccCccccccCCCCCCccccCCCCcccccccccccCCCCCCCCCCCcchhhhHHHHhhhhhhccCCChhHHHHhhcCHH
Q 001515 475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE 554 (1063)
Q Consensus 475 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~AL~S~e 554 (1063)
.+..| .|+... +...+ +.-.+.++++|+.+..
T Consensus 417 ~~~~~--------l~d~r~--------------------~~~ke--------------------~~S~~~k~~~~~~~~~ 448 (1156)
T KOG1931|consen 417 VLSTG--------LLDNRP--------------------TLTKE--------------------ALSLFNKLEEALQRIV 448 (1156)
T ss_pred eehhh--------hhhccc--------------------Ccchh--------------------hhhhHHHHHHHHHHHH
Confidence 00111 111100 00000 0114689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHh
Q 001515 555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1063)
Q Consensus 555 ~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL 634 (1063)
+|.++|+++.+.++..|+++.|.|.|..++.|+|++|...+.+++|..++.++...+..++|....+.++..++.|++.|
T Consensus 449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L 528 (1156)
T KOG1931|consen 449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL 528 (1156)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCC------------cccc-cCcceeeecCCC-------
Q 001515 635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDP------------VPLD-VSSLITFSGNPG------- 694 (1063)
Q Consensus 635 ~~~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~~~l~~~------------~~~~-l~~~~~~~~~~~------- 694 (1063)
+...+|.+++.-+.+. ..+.+..|.+++.+++++..--..+. +.++ +...++......
T Consensus 529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~ 606 (1156)
T KOG1931|consen 529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG 606 (1156)
T ss_pred HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence 9999999998855543 33556678899999987664110000 0000 000000000000
Q ss_pred ------C-Ccc-----------ccC---CCCe---EEEEEEE------------------------eCCCCceE------
Q 001515 695 ------P-PLE-----------LCD---GDPG---TLSVTVW------------------------SGFPDDIT------ 720 (1063)
Q Consensus 695 ------~-~~~-----------~~~---~d~~---~L~V~l~------------------------s~lP~~I~------ 720 (1063)
| +.. +|. .+.+ +..|.+. +.-|.+.+
T Consensus 607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~ 686 (1156)
T KOG1931|consen 607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL 686 (1156)
T ss_pred eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence 0 000 000 0000 1122222 11111111
Q ss_pred -----eeEEEEEEEec------ccCCCCceEEeecCceEeeCCccEEEEEcCCCcCeeEEEEEEEEEEcceEEEeccccC
Q 001515 721 -----VDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK 789 (1063)
Q Consensus 721 -----~d~v~l~L~~~------~~~~~~~~~l~s~~~~~L~PG~Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~ 789 (1063)
-.+++++.+++ ....++..-.-+..++.|.||.|.+++..++..+|.|...+++.++|.+.|+++.+.
T Consensus 687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~- 765 (1156)
T KOG1931|consen 687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF- 765 (1156)
T ss_pred ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence 11112211111 000111112235678899999999999999999999999999999999999965332
Q ss_pred CCCCCCCCcccccCCCCCeEEEEcCCCccceEeeecCccccCCceEEEEEEEcCcccc-cceEEEEecCCCCccccccce
Q 001515 790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV 868 (1063)
Q Consensus 790 ~~~~~~~~~~~~e~~~~p~i~v~~~~~~~~L~a~~~~P~Li~~~q~V~l~I~sg~~~i-~~~~L~l~~s~gl~i~~~~~~ 868 (1063)
|+..+|.++++ |...+.+ ..+ .+.|+.|+|..++..|...| .++.+++.|.....+..+.+.
T Consensus 766 --~~~k~d~~s~~----P~~~~~~---l~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T 828 (1156)
T KOG1931|consen 766 --PTKKNDQGSTE----PETKKER---LQC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT 828 (1156)
T ss_pred --CcccccccccC----Cccccch---HHH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence 66666666666 3222221 122 55669999999999999888 688888888777777665542
Q ss_pred eccccccccccccccCccccccccccchhhhccccccccccCCCCCCceeeEeEeeEeecccccCCccccCCcccccccc
Q 001515 869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948 (1063)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 948 (1063)
++ .++... +.+..++.+ +.-+.+...+++.......++|+.+..+ .|.+++
T Consensus 829 ~~-----~ae~~~----------~d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~ss~h---------- 879 (1156)
T KOG1931|consen 829 TI-----FAEAAR----------NDKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFSSDH---------- 879 (1156)
T ss_pred cc-----cccccc----------cCccchhhh-ccccceEEecchhcccccccccccCCcc---cccccc----------
Confidence 21 111111 012223333 6668888899998888888888886555 233322
Q ss_pred ceeEEEEeeccccccceeeeeEEEEeeCCeeEEEEeeeccCCcceEEEEEEccccceeEEEeeeeeeecCCcccccccCC
Q 001515 949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1063)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~i~l~f~~Pf~~s~~~~s~~~~~~~~l~v~l~s~s~~~l~i~~~~l~~~~~~~~~~~~~~ 1028 (1063)
..+++.++ |+|+.||+.|+.+|..||+|++|+++.|+|+.-+|||++|+.+.+.+...+.++.+.+|+.|..+ ++
T Consensus 880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~-~~ 954 (1156)
T KOG1931|consen 880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQN-DL 954 (1156)
T ss_pred ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhc-CC
Confidence 34445555 66777888999999999999999999999966699999999999999999999999999988554 56
Q ss_pred CCCCCcCceeeccCCeeeEEEEEecCCCC
Q 001515 1029 RPTSGFFPLVISSSSKAGILFSICLGKTT 1057 (1063)
Q Consensus 1029 ~p~~~~~~~~~~~~~~a~~~~~l~~~~~~ 1057 (1063)
++++++||++. .+++.+-|++.|-.+|
T Consensus 955 ~~t~S~~p~~~--~~s~~~~~il~~~~ep 981 (1156)
T KOG1931|consen 955 LNTKSFFPNEC--IESVVFDKILICLNEP 981 (1156)
T ss_pred CCccccccHHH--HHHHHHHHHHHHhcCC
Confidence 66668889765 5566666666665553
No 2
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=2.1e-24 Score=241.05 Aligned_cols=460 Identities=10% Similarity=-0.067 Sum_probs=326.7
Q ss_pred HHHHHHHHHHHHhcC--CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchh
Q 001515 561 LELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 638 (1063)
Q Consensus 561 ~~Lt~~Ai~~y~~a~--R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~ 638 (1063)
+.+.+++..+|+.+. |+++ .+++.||..||+.++|.+|...++.++..|+.+||+.+...++..+..|+..+..-.
T Consensus 115 Ia~Lk~~a~Q~~~Y~~P~~nS--~~~V~~Gq~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk~~ 192 (809)
T KOG4386|consen 115 IAALKRNAPQNVPYPSPDANS--SSTVFFGQRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQKYG 192 (809)
T ss_pred HHHHhhcccccCCCCCCCcCc--cceeEecccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 446667778888887 8888 559999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcc---------------------------cccCcceeeec
Q 001515 639 GYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVP---------------------------LDVSSLITFSG 691 (1063)
Q Consensus 639 eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~~~l~~~~~---------------------------~~l~~~~~~~~ 691 (1063)
+|......++... ++....++.+.......+.+.+.+.+.+ +-.+++..+..
T Consensus 193 ~~~~~k~~mm~~~-t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~~l~ 271 (809)
T KOG4386|consen 193 CLRMKKKVMMEMN-TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVKGLL 271 (809)
T ss_pred hHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhhHHH
Confidence 9999988888753 3344445555555554454433221111 00133333332
Q ss_pred CC--C-CCccccCCCCeEEEEEEEeCCCCceEeeEEEEEEEec-ccCC----CC-----ceEEeecCceEeeCCccEEE-
Q 001515 692 NP--G-PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMAT-YNAD----EG-----AKALNTSTATVLKPGRNTIT- 757 (1063)
Q Consensus 692 ~~--~-~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~-~~~~----~~-----~~~l~s~~~~~L~PG~Nki~- 757 (1063)
++ + ||.++. +++...+..+.-+.|..+.+.+..+.|++. |+.- +. .+-.-..+..++.||+..-.
T Consensus 272 ~~~~~~~P~~~~-~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~~l~~Et~~s~~~~qtv~Q~s~~~V~~e~~s~i 350 (809)
T KOG4386|consen 272 DVLDGKPPGSPF-PNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLETRVSFLDQQTVEQDSKVAVRVEIVSKI 350 (809)
T ss_pred HHhcCCCCCCCC-CChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHHHHHHHHHHHHHHHhhhccCceEEeeHHHHHHH
Confidence 22 1 343333 333445666777899999999988888764 1110 00 00001335566777764421
Q ss_pred --EEcCCCcCeeE-EEEEEEEEEcc----eEEEeccccC-CCCCCCC-----------C-----ccccc-CCCCCeEEEE
Q 001515 758 --VDLPPQKPGSY-VLGALTGHIGR----LRFRSHSFSK-VGPADSD-----------D-----FMSYE-KPTRPILKVF 812 (1063)
Q Consensus 758 --L~~~~~~~G~y-~l~~l~i~ig~----l~F~s~~f~~-~~~~~~~-----------~-----~~~~e-~~~~p~i~v~ 812 (1063)
+...+...|.. .....-.-.|+ ...+ .|.. +|.+... + ...++ +..+...+..
T Consensus 351 ~q~i~~nd~~~~~~~~k~~~~A~~t~n~~~~li--~~~~~~G~v~~Sks~~~q~~~~~~~~n~~q~~~~tv~~~t~~l~~ 428 (809)
T KOG4386|consen 351 EQVIRLNDVSVHLKAKKFPPDANQTANDADCLI--YDPIHLGSVEVSKSKPLQRVVLLDLKNAKQNWIVTVTKVTLDLGN 428 (809)
T ss_pred HHHHhhcchhheeeeecCCcccccCCCCCcEEE--ecCCCCcchhhhhhhhhhhHHHhhccccccceEEEeeehhhhhhh
Confidence 23344444442 22211111221 1222 2222 1211000 0 01122 1112333445
Q ss_pred cCCCccceEeeecCccccCCceEEEEEEEcCcccc-cceEEEEecCCCCccccccceeccccccccccccccCccccccc
Q 001515 813 NPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSL 891 (1063)
Q Consensus 813 ~~~~~~~L~a~~~~P~Li~~~q~V~l~I~sg~~~i-~~~~L~l~~s~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1063)
..++++.+...+.+|++-+|.+..-++|...+.++ -+++++++|.+|..-.. .+-+|. ...+...|++
T Consensus 429 a~~~NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsL----T~rn~~-------k~~~~~~~~d 497 (809)
T KOG4386|consen 429 AIRGNIEFDENALNRNCHVENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSL----TIRNTC-------KSSPIHGLLD 497 (809)
T ss_pred hccCcceeccccCCcccchheEEEEEEeeechhhhhhhhhhhcCcccccccce----eeeccc-------ccCCchhhhh
Confidence 56678889999999999999999999999999888 58899987777755443 332222 3467778888
Q ss_pred cccchhhhccccccccccCCCCCCceeeEeEeeEeecccccCCccccCCccccccccceeEEEEeeccccccceeeeeEE
Q 001515 892 DINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIA 971 (1063)
Q Consensus 892 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 971 (1063)
+.++.. ..++.+++-+.|..++.+|+||.+.+.|+|++.++|.....|+. ..+.|+ ||++. |++
T Consensus 498 ~~~~~~-------k~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVee---keivck---chkde---Tvt 561 (809)
T KOG4386|consen 498 FKRKEQ-------KHAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEE---KEIVCK---CHKDE---TVT 561 (809)
T ss_pred hhhHhh-------ccCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHH---hhHhhh---ccccc---eEE
Confidence 887763 88999999999999999999999999999999998888778887 788999 99999 999
Q ss_pred EEeeCCeeEEEEeeec--------cCCcceEEEEEEccccceeEEEeeeeeeecCCcccccccCCCCCCCcCceeeccCC
Q 001515 972 VHFTDPFHVSTRIADK--------CSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSS 1043 (1063)
Q Consensus 972 l~f~~Pf~~s~~~~s~--------~~~~~~~l~v~l~s~s~~~l~i~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 1043 (1063)
++...||+|..+|+++ +.|+||++|.++.+.+||.++|.++.|++.+.+.. +|+ ..|+..++.++.||
T Consensus 562 ietvfpfdvavkFvstkfehlervyadIpfllmtdLlsaspwAltIVsSelqlapsmtt---vdq-leSqvdnvilqtgE 637 (809)
T KOG4386|consen 562 IETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTT---VDQ-LESQVDNVILQTGE 637 (809)
T ss_pred EEEEeeeeeeeeeehhhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhhhhee---eec-ccccccchhhhccc
Confidence 9999999999999993 89999999999999999999999999999998743 343 55688999999999
Q ss_pred eeeEEEEEecCCCC
Q 001515 1044 KAGILFSICLGKTT 1057 (1063)
Q Consensus 1044 ~a~~~~~l~~~~~~ 1057 (1063)
+|++|||+.|+...
T Consensus 638 sasecfclqcpslg 651 (809)
T KOG4386|consen 638 SASECFCLQCPSLG 651 (809)
T ss_pred ceeeeeeEeccccc
Confidence 99999999999854
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.50 E-value=8e-12 Score=152.78 Aligned_cols=322 Identities=17% Similarity=0.177 Sum_probs=202.2
Q ss_pred ccCCCCeEEEEEEEeCCCCceEeeEEEEEEEec-ccC----CC-----------CceEEeecCceEeeCCccE-EEEEcC
Q 001515 699 LCDGDPGTLSVTVWSGFPDDITVDTLSLTLMAT-YNA----DE-----------GAKALNTSTATVLKPGRNT-ITVDLP 761 (1063)
Q Consensus 699 ~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~-~~~----~~-----------~~~~l~s~~~~~L~PG~Nk-i~L~~~ 761 (1063)
...+++..++|.|+|.+|.+|.+++++|.|++. ++. +. .........++.|.||..+ +.+...
T Consensus 23 ~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~ 102 (554)
T PF07919_consen 23 GKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFV 102 (554)
T ss_pred ccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEe
Confidence 445889999999999999999999999999975 000 00 0011223457889999987 457777
Q ss_pred CCc---CeeEEEEEEEEEEcceEEE-eccccCCCCC--CCC------Cc---ccccCC-CCCeEEEEcCCCccceEe-ee
Q 001515 762 PQK---PGSYVLGALTGHIGRLRFR-SHSFSKVGPA--DSD------DF---MSYEKP-TRPILKVFNPRPLVDLAA-AI 824 (1063)
Q Consensus 762 ~~~---~G~y~l~~l~i~ig~l~F~-s~~f~~~~~~--~~~------~~---~~~e~~-~~p~i~v~~~~~~~~L~a-~~ 824 (1063)
... .|.+++.++.+.+|.-.|. ...|+..... ... .. .-.... .++++.|.|++|++++.+ .+
T Consensus 103 ~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~I~~~~~ 182 (554)
T PF07919_consen 103 PREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVSIKLPNH 182 (554)
T ss_pred ccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEECCCCCeEEEeCCC
Confidence 667 9999999999999953222 1122221000 000 00 001101 357899999999999999 99
Q ss_pred cCccccCCceEEEEEEEcCcccccceEEEEecC-CCCccccccceeccccccccccccccCccccccccccchhhhcccc
Q 001515 825 SSPLLINEAQWVGIIVQPIDYSLKGAILQIDTG-PGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLH 903 (1063)
Q Consensus 825 ~~P~Li~~~q~V~l~I~sg~~~i~~~~L~l~~s-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1063)
.+|+++||.+.|.|+|.|+++....+++.+..- ++..-..... ...+. .....+...... .
T Consensus 183 ~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~-------~ 244 (554)
T PF07919_consen 183 KPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEE--------TEDLS---QVNWDSDKDDEP-------L 244 (554)
T ss_pred CCCeEcCCEEEEEEEEEcCCCccceeEEEEEEeccccccccccc--------Cccce---ecccccccccch-------h
Confidence 999999999999999999998886656555433 2211111110 00000 000000000011 1
Q ss_pred ccccccCCCCCCceeeEeEeeEeecccccCCccccCCccccccccceeEEEEeeccccccceeeeeEEEEeeCCeeEEE-
Q 001515 904 DGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVST- 982 (1063)
Q Consensus 904 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~Pf~~s~- 982 (1063)
...+++|.++++++....+++++...+.+.-.+++.|+-+. .+ +..|+ +.+.. ++.+++..||+++.
T Consensus 245 ~~~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~-~~-----~~~~~---i~~~~---~~~l~~~~PF~~~y~ 312 (554)
T PF07919_consen 245 FLGIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHLDV-ES-----DPETP---ISKTK---TVQLPVINPFEANYD 312 (554)
T ss_pred ccCcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEEec-CC-----CCcee---EEEeE---EEeeeEEcCEEeeee
Confidence 36889999999999999999994443332223333222100 11 11222 33333 78999999995554
Q ss_pred ---Eeee--------------------------------ccCCcceEEEEEEccccceeEEEeeeeeeecCCcccccccC
Q 001515 983 ---RIAD--------------------------------KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGD 1027 (1063)
Q Consensus 983 ---~~~s--------------------------------~~~~~~~~l~v~l~s~s~~~l~i~~~~l~~~~~~~~~~~~~ 1027 (1063)
|++. ...+.+++|+..+.+.++|+|.|.+..++..+...... .+
T Consensus 313 ~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~~-~~ 391 (554)
T PF07919_consen 313 FSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGAS-CD 391 (554)
T ss_pred EEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCcee-ee
Confidence 5542 24566789999999999999999999999987543321 11
Q ss_pred CCCCC---CcCceeeccCCeeeEEEEE
Q 001515 1028 GRPTS---GFFPLVISSSSKAGILFSI 1051 (1063)
Q Consensus 1028 ~~p~~---~~~~~~~~~~~~a~~~~~l 1051 (1063)
..... ...+.+++++++...+|++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~~~~~~f~~ 418 (554)
T PF07919_consen 392 VSSEDSSSPESGTVLQPGECREDQFCL 418 (554)
T ss_pred eccccccCCCccceeCccccccccccc
Confidence 11110 1246788999999998884
No 4
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=99.41 E-value=1e-12 Score=144.18 Aligned_cols=99 Identities=34% Similarity=0.473 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHH
Q 001515 551 SSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC 630 (1063)
Q Consensus 551 ~S~e~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C 630 (1063)
...-++...+++|.++|+++|++.++.|++..++.+||.+||+.|||++|+.+|..++..|+.|||+.|...+|..+++|
T Consensus 148 e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 148 EKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHHHHhc
Q 001515 631 QKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 631 lkkL~~~~eYv~~~l~LLs 649 (1063)
++++++.++||.+|++|++
T Consensus 228 a~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999986
No 5
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=97.65 E-value=0.14 Score=68.59 Aligned_cols=279 Identities=20% Similarity=0.209 Sum_probs=169.3
Q ss_pred HHHHHHhcCCeehhHHhhHHHHHHHhhc-CC-HHHHHHHHHHHHhhhhh---------------CC-cchHHHHHHHHHH
Q 001515 567 AANNYHCSWWKRHGVVLDGEIAAVCFKH-GN-YDQAAKSYEKVCALYSG---------------EG-WQDLLAEVLPNLA 628 (1063)
Q Consensus 567 Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~-gd-Y~kA~~~f~~~~~~Y~~---------------eg-W~~L~~~~L~~~a 628 (1063)
+.+.|...|-.|-...+..+++..+... .. .+....++..++..|+- .+ |..|-..+|..++
T Consensus 451 lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I 530 (1185)
T PF08626_consen 451 LASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECI 530 (1185)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHH
Confidence 3477999884443335567777776541 10 12233477777776664 23 9999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh----cCCCCCccc---------------cc------
Q 001515 629 ECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY----GEMKDPVPL---------------DV------ 683 (1063)
Q Consensus 629 ~ClkkL~~~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~----~~l~~~~~~---------------~l------ 683 (1063)
.+.+.|++...-++.++.||..+...++..+...+++++.+.+. ....-.++| |+
T Consensus 531 ~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i~~ 610 (1185)
T PF08626_consen 531 NIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDILP 610 (1185)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccchhh
Confidence 99999999999999999898876566777787788888877661 110000111 10
Q ss_pred --------------Ccce--eeecC--CC---CCccccCCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceEEe
Q 001515 684 --------------SSLI--TFSGN--PG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN 742 (1063)
Q Consensus 684 --------------~~~~--~~~~~--~~---~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~ 742 (1063)
.+.| .|... .. .......++.+.+.|+|.|-|+-+|++++|+|.-.+. .. .-
T Consensus 611 ~~~~~~~~~~~~~~~~pFYnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv------~f-es 683 (1185)
T PF08626_consen 611 PHPRKSEASSQSINKGPFYNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGV------PF-ES 683 (1185)
T ss_pred hhhhhhhhcccCCCCCCcCChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCC------cc-cc
Confidence 0011 01110 00 1122345788999999999999999999998876532 11 11
Q ss_pred ecCceEe-eCCc-cEEEEEcCCCcCeeEEEEEEEEEEcceE--EEeccccCCC---------C-----CCCCCc---ccc
Q 001515 743 TSTATVL-KPGR-NTITVDLPPQKPGSYVLGALTGHIGRLR--FRSHSFSKVG---------P-----ADSDDF---MSY 801 (1063)
Q Consensus 743 s~~~~~L-~PG~-Nki~L~~~~~~~G~y~l~~l~i~ig~l~--F~s~~f~~~~---------~-----~~~~~~---~~~ 801 (1063)
....+.| .|.. ..++|...+...|...+..+.++++++. +. ..+.... . ...... +..
T Consensus 684 ~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~ 762 (1185)
T PF08626_consen 684 YPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFF-PIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLES 762 (1185)
T ss_pred ceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEccccccee-cccCcccchhhhhhcccccccccccccccccccc
Confidence 1123445 6655 4477888899999999999999999852 11 1111110 0 000000 000
Q ss_pred c--CCCCCeEEEEcCCCccceEeeec----Cc--cccCCceEEEEEEEcCcccc-cceEEEEe
Q 001515 802 E--KPTRPILKVFNPRPLVDLAAAIS----SP--LLINEAQWVGIIVQPIDYSL-KGAILQID 855 (1063)
Q Consensus 802 e--~~~~p~i~v~~~~~~~~L~a~~~----~P--~Li~~~q~V~l~I~sg~~~i-~~~~L~l~ 855 (1063)
+ ....-.+.|+|+-| .|.+..+ ++ .+-||-+.+.|+|+|-+..- ....+++.
T Consensus 763 ~~~~~~~l~i~VIp~qP--~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~ 823 (1185)
T PF08626_consen 763 ESPKTKSLSIKVIPPQP--LLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQ 823 (1185)
T ss_pred cccccCcceEEEECCCC--eEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEE
Confidence 0 01123677888877 4444443 11 26677799999999988332 55555554
No 6
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.25 E-value=0.019 Score=63.52 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=114.6
Q ss_pred CccccCCceEEEEEEEcCcccc-cceEEEEec-CCCC--ccccccceeccccccccccccccCccccccccccchhhhcc
Q 001515 826 SPLLINEAQWVGIIVQPIDYSL-KGAILQIDT-GPGL--TIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLH 901 (1063)
Q Consensus 826 ~P~Li~~~q~V~l~I~sg~~~i-~~~~L~l~~-s~gl--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1063)
+-+-+||-+.--|.++|.++.. +++.|++.. ++.. ++.+....
T Consensus 8 G~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~--------------------------------- 54 (249)
T PF06159_consen 8 GSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNE--------------------------------- 54 (249)
T ss_pred CCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCc---------------------------------
Confidence 3455679999999999988666 888888765 4443 33222210
Q ss_pred ccccccccCCCCCCceeeEe--EeeEeecccccCCccccCCccccccccceeEEEEeecccc-------ccceeeeeEEE
Q 001515 902 LHDGRIQLPDWASNLTSILW--IPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVC-------HNQIFERTIAV 972 (1063)
Q Consensus 902 ~~~~~i~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~i~l 972 (1063)
...-+.++++|+++...- ..|+ -.| ++.+.|...+. ....|.+....
T Consensus 55 --~~~~~~~~L~p~~~l~~iv~~~lk--------------------E~G--~h~L~c~VsY~~~~~~~g~~~tfRK~ykF 110 (249)
T PF06159_consen 55 --NSDSPVASLAPGESLDFIVSHELK--------------------ELG--NHTLVCTVSYTDPTETSGERRTFRKFYKF 110 (249)
T ss_pred --cccccccccCCCCeEeEEEEEEee--------------------ecC--ceEEEEEEEEecCcccCCccceEeeeeEE
Confidence 011234456666663322 2222 112 25666664333 23456667777
Q ss_pred EeeCCeeEEEEeeeccCCc-------ceEEEEEEccccceeEEEeeeeeeecCCcccccccCCCCCCCc-----------
Q 001515 973 HFTDPFHVSTRIADKCSDG-------TLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGF----------- 1034 (1063)
Q Consensus 973 ~f~~Pf~~s~~~~s~~~~~-------~~~l~v~l~s~s~~~l~i~~~~l~~~~~~~~~~~~~~~p~~~~----------- 1034 (1063)
...+||.|.+|++. ..+. ++||.++|++.+.-+|.|....|...+++. ..++|.....
T Consensus 111 ~v~~PL~VktK~~~-~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~---~~~ln~~~~~~~~~~~~~~~~ 186 (249)
T PF06159_consen 111 QVLNPLSVKTKVYN-LEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFK---VTDLNWEPSGESSDGEFGGIS 186 (249)
T ss_pred eCCCCcEEEEEEEe-cCCccccccceeEEEEEEEEecCCCceEEEEEEeecCCCce---eEecccccccccccccccccc
Confidence 88999999999999 6664 889999999999999999999999999883 3344422111
Q ss_pred --CceeeccCCeeeEEEEEecCCC
Q 001515 1035 --FPLVISSSSKAGILFSICLGKT 1056 (1063)
Q Consensus 1035 --~~~~~~~~~~a~~~~~l~~~~~ 1056 (1063)
....++++..-.+||+|.-.+.
T Consensus 187 ~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 187 SGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred cCCcceeCCCCEEEEEEEEEECCc
Confidence 2357999999999999988776
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.78 E-value=0.078 Score=59.65 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhc-CCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 561 ~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~-gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
++..++|++.|...||.+.+-.+...+|.+|-.. |||++|+.+|..++..|..+|........+..++.++-++++-++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 4567889999999999999999999999999999 999999999999999999999888889999999999999987766
Q ss_pred HHHHHHHHh
Q 001515 640 YLLSCVRLL 648 (1063)
Q Consensus 640 Yv~~~l~LL 648 (1063)
=+...-++.
T Consensus 174 A~~~~e~~~ 182 (282)
T PF14938_consen 174 AIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555444
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.66 E-value=0.35 Score=42.85 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=52.1
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC-cchHHHHHHHHHHHHHHHhcchh---hHHHHHHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEA---GYLLSCVRL 647 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~ClkkL~~~~---eYv~~~l~L 647 (1063)
.+...||..|+.+|+|++|..+|..++..+..-| .+.....++..++.|+..+++.+ +|..-++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467899999999999999999999999977676 55455889999999999998875 444444433
No 9
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=11 Score=48.16 Aligned_cols=223 Identities=17% Similarity=0.174 Sum_probs=116.1
Q ss_pred cchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcC-----CCCCccc---------
Q 001515 616 WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGE-----MKDPVPL--------- 681 (1063)
Q Consensus 616 W~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~~~-----l~~~~~~--------- 681 (1063)
|..|--.+|........+.++-+.-++.+..||..+--.++..+...+++++.+.+... .-+|..+
T Consensus 557 w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~ts~~~~i~~~d~~iild~ 636 (1235)
T KOG1953|consen 557 WSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSATSYWDPIHINDPVIILDP 636 (1235)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhcccccccccceEecCccEecCc
Confidence 99888888888777777788776666655556655434456666778888887755321 0011110
Q ss_pred ------cc---------------------CcceeeecCC-------C-CCccccCCCCeEEEEEEEeCCCCceEeeEEEE
Q 001515 682 ------DV---------------------SSLITFSGNP-------G-PPLELCDGDPGTLSVTVWSGFPDDITVDTLSL 726 (1063)
Q Consensus 682 ------~l---------------------~~~~~~~~~~-------~-~~~~~~~~d~~~L~V~l~s~lP~~I~~d~v~l 726 (1063)
|+ ...+.|...+ . +......+++..+.|+++|-+.-+++++.+.+
T Consensus 637 ~~lt~fPliss~~vlel~~Nrart~~pn~~e~spFiytpfsk~~dN~~~~LvwVvdepvef~v~v~Np~~fdl~V~Di~L 716 (1235)
T KOG1953|consen 637 FMLTDFPLISSSEVLELIHNRARTGLPNSIEKSPFIYTPFSKRQDNNQSKLVWVVDEPVEFSVYVRNPLSFDLEVQDIHL 716 (1235)
T ss_pred ccccccccccChhHHHHHhcccccCCCcccccCceEeccccccccCccceEEEEeCCceEEEEEEcCccceeEEEeeEEE
Confidence 00 0001111111 0 12233457889999999999999999999887
Q ss_pred EEEecccCCCCceEEeecCceEeeCCc--cEEEEEcCCCcCeeEEEEEEEEEEcceEEEeccccCCCCCCCCCcccccCC
Q 001515 727 TLMATYNADEGAKALNTSTATVLKPGR--NTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKP 804 (1063)
Q Consensus 727 ~L~~~~~~~~~~~~l~s~~~~~L~PG~--Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~~~~~~~~~~~~~e~~ 804 (1063)
.-.+. +-... .-...+.|.. -++++...+...|-..+.-.++..=++.-.+..|...++.-.+.....+.+
T Consensus 717 ~~egv----nF~~~---~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~ 789 (1235)
T KOG1953|consen 717 ETEGV----NFKCS---HVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKS 789 (1235)
T ss_pred Eeccc----cceee---eeeeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccc
Confidence 77643 21111 1123344433 457888778888864444444443222111112222222111111111111
Q ss_pred C------CCeEEEEcCCCccceEeeecCcc-----ccCCceEEEEEEEcCcc
Q 001515 805 T------RPILKVFNPRPLVDLAAAISSPL-----LINEAQWVGIIVQPIDY 845 (1063)
Q Consensus 805 ~------~p~i~v~~~~~~~~L~a~~~~P~-----Li~~~q~V~l~I~sg~~ 845 (1063)
. +.-+.+.|+-|..-|......+. +-|....+.|++.|.+.
T Consensus 790 kl~~vyl~~~i~ilP~~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~ 841 (1235)
T KOG1953|consen 790 KLVNVYLRSLITILPLWPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSS 841 (1235)
T ss_pred hhheeecccccccCCCcccchhhhcccCCCccEEEEcCCcceEEEEEEecCc
Confidence 1 11234445545333444443333 33455678888888775
No 10
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.89 E-value=0.81 Score=51.10 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=61.7
Q ss_pred hhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhccCCC
Q 001515 579 HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKG 653 (1063)
Q Consensus 579 sa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~~~ 653 (1063)
.+.....-+|..||..|+|++|+.+|..++..|-.+.|. ...|...+.|+..+++.++-..+.-+++..++.
T Consensus 178 ~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 178 YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 334567999999999999999999999999999999998 577778888999999998888888777766543
No 11
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.16 E-value=3.1 Score=40.91 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCC----eehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 564 TKGAANNYHCSWW----KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 564 t~~Ai~~y~~a~R----~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
-++|+..|..+-. --....+.+++|.-+-+.|+|++|+..|+.....|.+..|+ ..+-..++-|+..+++.++
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~---~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN---AALRVFLALALYNLGRPKE 93 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHHCCCHHH
Confidence 3455666655420 01112457899999999999999999999999999888887 4455667779999999999
Q ss_pred HHHHHHHHhc
Q 001515 640 YLLSCVRLLS 649 (1063)
Q Consensus 640 Yv~~~l~LLs 649 (1063)
=+...+..|+
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988775
No 12
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.29 E-value=1.7 Score=47.12 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhc-CCHHHHHHHHHHHHhhhhhCCcchHHHH
Q 001515 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAE 622 (1063)
Q Consensus 562 ~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~-gdY~kA~~~f~~~~~~Y~~egW~~L~~~ 622 (1063)
+-.+.||+.|++-||.|+|..-..+||+.|=.- -|+++|+.+|..+.++|..+--..+...
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 345789999999999999999999999998654 8999999999999999999988866644
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.82 E-value=1.3 Score=39.03 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCe-ehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001515 563 LTKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1063)
Q Consensus 563 Lt~~Ai~~y~~a~R~-Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~ 612 (1063)
..++|+..+...|.. .....+...||..|+.+|+|++|+.+|..++..+.
T Consensus 27 ~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 27 YYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 556666666666632 23456689999999999999999999999998764
No 14
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.71 E-value=1.2 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~~Y~ 612 (1063)
..||.+|.++|+|++|+.+|..++..-.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999775543
No 15
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.40 E-value=2.3 Score=36.07 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 586 dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
++|..++++|+|++|...|..++..+-. ....+..++.|+...++.++=+...-+++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6799999999999999999999988744 456777888899888888766655544443
No 16
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.61 E-value=4.9 Score=37.66 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=52.6
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhccC
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~ 651 (1063)
.....+|..++..|+|+.|..+|..++..|....+. ..++..++.|+.++++.++-+...-+++...
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 456779999999999999999999999887655443 2456778888999999877777766666544
No 17
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.73 E-value=0.75 Score=39.37 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHHhcC-CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhh-CCcchH
Q 001515 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDL 619 (1063)
Q Consensus 565 ~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~-egW~~L 619 (1063)
+.|++.|+++- +...-..+...||..|++.|+|++|..+|..+.....+ ..|..+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45566666653 33333456778999999999999999999998887776 334433
No 18
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.66 E-value=1.9 Score=36.98 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=44.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhc-chhhHHHHHHHHh
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN-DEAGYLLSCVRLL 648 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~-~~~eYv~~~l~LL 648 (1063)
.-..+|..+++.|+|++|+.+|..++..-..+ ..++...+.|+.+++ +.++-+..+.+.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 35678999999999999999999999975332 347778888998888 5555444444333
No 19
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.37 E-value=5.1 Score=44.51 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcC-CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 564 t~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
.+.++..|.+-. ..--+-..+.=|++.+|.+|||..|+.+|-.++..|..+-|. ..+|..++.|+..|+..++==.
T Consensus 160 A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~~~~l~~~d~A~a 236 (262)
T COG1729 160 AEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVSLGRLGNTDEACA 236 (262)
T ss_pred HHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhcCHHHHHH
Confidence 344444444432 444445568889999999999999999999999999999998 6899999999999999987766
Q ss_pred HHHHHhccCCC
Q 001515 643 SCVRLLSLDKG 653 (1063)
Q Consensus 643 ~~l~LLs~~~~ 653 (1063)
+.-++...+++
T Consensus 237 tl~qv~k~YP~ 247 (262)
T COG1729 237 TLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHCCC
Confidence 66667776654
No 20
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=83.85 E-value=9.6 Score=42.82 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC-cchHHHHHHHHHHHHHHHhcchhhHH
Q 001515 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYL 641 (1063)
Q Consensus 563 Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~ClkkL~~~~eYv 641 (1063)
+-++|++.|...++.+.+..+...+|.++.+.|+|++|..+|..+...+.+.+ ...=....+...+=|+-.+++...--
T Consensus 137 ~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~ 216 (282)
T PF14938_consen 137 YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAAR 216 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 44678899999998899999999999999999999999999999999887654 22112233333333655555443222
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Q 001515 642 LSCVRLLSLDKGLFSTKERQAFQSEVISLAYG 673 (1063)
Q Consensus 642 ~~~l~LLs~~~~~~s~~~R~~~~~ell~~~~~ 673 (1063)
+..=+....+.+-.+..+ -.+..+|++....
T Consensus 217 ~~~~~~~~~~~~F~~s~E-~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 217 KALERYCSQDPSFASSRE-YKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHGTTSTTSTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHh
Confidence 222222222222222222 2578888877653
No 21
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=83.35 E-value=0.28 Score=62.15 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=126.3
Q ss_pred ChhHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC--CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchH
Q 001515 542 SNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL 619 (1063)
Q Consensus 542 ~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~y~~a~--R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L 619 (1063)
+.+.|+........+.+..-.+++.|++.|+++. +.|-...+..-+...|++=..|+.|..+....+..|...+|..+
T Consensus 408 ~se~l~~~~~~~~~l~d~r~~~~ke~~S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~ 487 (1156)
T KOG1931|consen 408 KSEQLKETFVLSTGLLDNRPTLTKEALSLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSI 487 (1156)
T ss_pred cccccceEeeehhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhh
Confidence 3455555556666666666777777777777765 55555566677777888888899999999999999999999876
Q ss_pred HH---HHHHHHHHHHHH--hcchhhHHHHHHHHhccCCCCCC----HHHHHHHHHHHHHHHhcCCCCCcccccCcceeee
Q 001515 620 LA---EVLPNLAECQKI--LNDEAGYLLSCVRLLSLDKGLFS----TKERQAFQSEVISLAYGEMKDPVPLDVSSLITFS 690 (1063)
Q Consensus 620 ~~---~~L~~~a~Clkk--L~~~~eYv~~~l~LLs~~~~~~s----~~~R~~~~~ell~~~~~~l~~~~~~~l~~~~~~~ 690 (1063)
+- .--..+..|.+. ++.+...+...+..+++.-..+. ......++....++... .......++.+++.+.
T Consensus 488 ~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~~L~~~-~r~h~~~k~l~~~~~~ 566 (1156)
T KOG1931|consen 488 LKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFHDLQEL-NRKHLMYKLLGLFEVF 566 (1156)
T ss_pred hcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHH-HHHHHHHHHHhHHHhh
Confidence 54 122233444442 33443333333333332100000 00000111111111110 0111122233334433
Q ss_pred cCCCCCccccCCCCeEEEEEEEeC-CCCceEeeEEEEEEEecccCCCCceEEeecCceEee-CCccEEEEEcCCCcCeeE
Q 001515 691 GNPGPPLELCDGDPGTLSVTVWSG-FPDDITVDTLSLTLMATYNADEGAKALNTSTATVLK-PGRNTITVDLPPQKPGSY 768 (1063)
Q Consensus 691 ~~~~~~~~~~~~d~~~L~V~l~s~-lP~~I~~d~v~l~L~~~~~~~~~~~~l~s~~~~~L~-PG~Nki~L~~~~~~~G~y 768 (1063)
.+. +.+......-...|...++ .|.++++-.+++.... +....+..-+..++ -+.|+..+.|+.+..|.|
T Consensus 567 ~~s--~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~------~~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~ 638 (1156)
T KOG1931|consen 567 LNS--KVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMD------GDVISQGPVDFLYKSIVVNKLILECRDIMYGEA 638 (1156)
T ss_pred hcc--hhhhhcccchhhhhhhhhccccceeEEeeccceeec------ceeeeccchHhhHhhhhhhhHHHHHHhhccchh
Confidence 322 2233333333344444434 6777776666555442 22222211122222 456888899999999999
Q ss_pred EEEEEEEEEcceEEE
Q 001515 769 VLGALTGHIGRLRFR 783 (1063)
Q Consensus 769 ~l~~l~i~ig~l~F~ 783 (1063)
.+.+.++++.++.|.
T Consensus 639 ~l~s~~v~l~gi~~~ 653 (1156)
T KOG1931|consen 639 ELLSFEVILEGITFV 653 (1156)
T ss_pred hheeeeeEeeccccc
Confidence 999999999998876
No 22
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.49 E-value=1.9 Score=38.80 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=39.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHH
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~ 644 (1063)
..-||..||+.|+|++|..++.. .. ..... .....++++|+.+|++.++=+++.
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LK-LDPSN-----PDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCH-----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44589999999999999999988 22 22222 344556699999999988766643
No 23
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.35 E-value=1.7 Score=31.38 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~ 613 (1063)
...+|..|+..|++++|..+|..+...|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467999999999999999999999988754
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.21 E-value=5.4 Score=34.04 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=36.9
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
.+...+|..+++.|+|++|..+|..++....... .++..++.|+...++.++-..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHHHHHHHHhHHHHHH
Confidence 4567788888888888888888888887665554 344555556655555444333
No 25
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.08 E-value=2.5 Score=30.77 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~ 612 (1063)
-..||..|++.|+|++|...|..++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46799999999999999999999987654
No 26
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.75 E-value=2.9 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhh
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~ 613 (1063)
....||..|+.+|+|++|..++..++..+..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4678999999999999999999999987653
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.04 E-value=18 Score=41.23 Aligned_cols=83 Identities=25% Similarity=0.248 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHH
Q 001515 553 VEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 632 (1063)
Q Consensus 553 ~e~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk 632 (1063)
+++|.+. .++.++|+.--++|- +.++.||.++...|+|++|+..+..+..- + ....+.++.++.+|+.
T Consensus 193 ~~~~d~A-~~~l~kAlqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----n-~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 193 SSDVDRA-RELLKKALQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQ----N-PEYLSEVLEMLYECYA 260 (389)
T ss_pred hhhHHHH-HHHHHHHHhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHh----C-hHHHHHHHHHHHHHHH
Confidence 3444442 234455544444443 45888999999999999999999999852 1 2234789999999999
Q ss_pred HhcchhhHHHHHHHH
Q 001515 633 ILNDEAGYLLSCVRL 647 (1063)
Q Consensus 633 kL~~~~eYv~~~l~L 647 (1063)
++|+.++++....+.
T Consensus 261 ~lg~~~~~~~fL~~~ 275 (389)
T COG2956 261 QLGKPAEGLNFLRRA 275 (389)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999997666554443
No 28
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.92 E-value=5 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y 611 (1063)
+-..+|..|+.+|+|++|+..|..++...
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 35679999999999999999999998753
No 29
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=73.39 E-value=10 Score=32.27 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=42.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LL 648 (1063)
...+|..++..|+|++|..+|..++..+.... ..+..++.|+...++.++-+..+-+.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998776553 344556667666666554444443333
No 30
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.31 E-value=19 Score=33.49 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=44.7
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 632 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk 632 (1063)
.....+|.+++..|++++|+..+..++.--++.+...-....|.-++++.+
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 446789999999999999999999999999999999888887777776654
No 31
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.77 E-value=8.2 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~ 612 (1063)
+-..+|.+|..+|+|++|..+|..+...-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999987643
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=70.02 E-value=9.9 Score=32.14 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcC-CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 001515 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1063)
Q Consensus 564 t~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y 611 (1063)
.+.|++.|..+- +..........+|..++++|+|++|..+|..++..+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456666666664 333445668899999999999999999999988654
No 33
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.07 E-value=16 Score=31.48 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 587 IAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 587 LA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
|+..|++.++|++|...+..++.....+ ...+..++.|+.++++..+=+..+-+.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678999999999999999999986653 34455688899999988766666655554
No 34
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=66.95 E-value=11 Score=40.22 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=60.7
Q ss_pred hHHHHhhcCHHHHHHHHHH--HHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHH
Q 001515 544 PNLLKSLSSVEEFEQKYLE--LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLA 621 (1063)
Q Consensus 544 ~~L~~AL~S~e~F~~~Y~~--Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~ 621 (1063)
..+++|+..=+.|.+.|=+ ....|-.....+ |.+-|.. -..+|.+|+++|.|..|+..|..++..|-+..|. -
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l-~~~la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~ 178 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL-RNRLAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---E 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH-HHHHHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---H
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---H
Confidence 4555665555555555433 333333323333 2333222 5678999999999999999999999999999997 5
Q ss_pred HHHHHHHHHHHHhcchh
Q 001515 622 EVLPNLAECQKILNDEA 638 (1063)
Q Consensus 622 ~~L~~~a~ClkkL~~~~ 638 (1063)
..|..+++++.+|+..+
T Consensus 179 ~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 179 EALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhCChH
Confidence 68888899999988774
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=64.86 E-value=19 Score=38.71 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 647 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~L 647 (1063)
..+|.+|+++|+|++|...|..+...|....|. ...+..++.++.++++.++.+.+.-.|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478899999999999999999999999887554 566778888999999998888755433
No 36
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.61 E-value=9.3 Score=25.70 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~ 610 (1063)
...+|..+++.|+|++|...|..++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 467899999999999999999988764
No 37
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=62.60 E-value=52 Score=31.79 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=41.9
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHh
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LL 648 (1063)
.+...+|..++..|+|.+|..+|..+...... . ......++.|+..+++.++=+...-+.+
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~-----~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPD-D-----PRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44678899999999999999999988876422 2 2334556778888888754444333333
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=62.08 E-value=56 Score=42.28 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhh-----hCCcchHHHHHHHHHHHHHHHhc
Q 001515 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS-----GEGWQDLLAEVLPNLAECQKILN 635 (1063)
Q Consensus 561 ~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~-----~egW~~L~~~~L~~~a~ClkkL~ 635 (1063)
+..-..|+..+...++. .---+.-.+|.+||+.|++++|...|.++..... ++| ..+...+.=.+++|+++|.
T Consensus 433 L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-KSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-ccchhHHHHHHHHHHHhhh
Confidence 44556677667666655 3334467899999999999999999999998744 344 3444556666777777763
Q ss_pred c
Q 001515 636 D 636 (1063)
Q Consensus 636 ~ 636 (1063)
+
T Consensus 511 ~ 511 (1018)
T KOG2002|consen 511 D 511 (1018)
T ss_pred h
Confidence 3
No 39
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=61.45 E-value=19 Score=30.52 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=42.7
Q ss_pred hhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcc
Q 001515 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1063)
Q Consensus 592 y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~ 650 (1063)
+..|+|++|+.+|..++..+..+ ..+...+++|+.+.++.++-..++-+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999988774 445557999999999999888877666643
No 40
>COG1470 Predicted membrane protein [Function unknown]
Probab=59.92 E-value=3.9e+02 Score=32.39 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceEEe-----ecCceEeeCCccE-EEEE---cCCCcCeeEEEE
Q 001515 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN-----TSTATVLKPGRNT-ITVD---LPPQKPGSYVLG 771 (1063)
Q Consensus 701 ~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~-----s~~~~~L~PG~Nk-i~L~---~~~~~~G~y~l~ 771 (1063)
.++...+.|+|.|+--.+ ++..|.+++- +++-..-| .-..+.|+||..+ ++++ ..+..+|.|.+.
T Consensus 282 ~~~t~sf~V~IeN~g~~~---d~y~Le~~g~---pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 282 PSTTASFTVSIENRGKQD---DEYALELSGL---PEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred cCCceEEEEEEccCCCCC---ceeEEEeccC---CCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 356667888888874333 5666666531 12211112 2235778999876 5555 446789999753
Q ss_pred EEEEEEcc--eEEEeccccCCCCCCCCCcccccCCCCCeEEEEcCCCccceEeeecCccccCCceEEEEEEEcCcccc-c
Q 001515 772 ALTGHIGR--LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-K 848 (1063)
Q Consensus 772 ~l~i~ig~--l~F~s~~f~~~~~~~~~~~~~~e~~~~p~i~v~~~~~~~~L~a~~~~P~Li~~~q~V~l~I~sg~~~i-~ 848 (1063)
-.... ++ ..+..-.-.-.+. +... +.+....-.+++.+ |+.+.+.+.|.|-.+.- +
T Consensus 356 I~A~s-~s~v~~e~~lki~~~g~------~~~~------v~l~~g~~~lt~ta--------Gee~~i~i~I~NsGna~Lt 414 (513)
T COG1470 356 ITASS-SSGVTRELPLKIKNTGS------YNEL------VKLDNGPYRLTITA--------GEEKTIRISIENSGNAPLT 414 (513)
T ss_pred EEEec-cccceeeeeEEEEeccc------ccee------EEccCCcEEEEecC--------CccceEEEEEEecCCCccc
Confidence 32211 11 1111000000000 1111 11111100233444 49999999998877665 9
Q ss_pred ceEEEEecCCCCccc
Q 001515 849 GAILQIDTGPGLTIE 863 (1063)
Q Consensus 849 ~~~L~l~~s~gl~i~ 863 (1063)
|.+|++....|..++
T Consensus 415 dIkl~v~~PqgWei~ 429 (513)
T COG1470 415 DIKLTVNGPQGWEIE 429 (513)
T ss_pred eeeEEecCCccceEE
Confidence 999988777675543
No 41
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.85 E-value=15 Score=31.56 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=27.0
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~ 612 (1063)
.+..+.|.+|++.|+|++|...|..++..-.
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5578899999999999999999999986433
No 42
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=58.05 E-value=59 Score=32.44 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.4
Q ss_pred CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHH
Q 001515 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1063)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~ 643 (1063)
...-+......+|..++..|+|++|...|..+.....+..+. ......+++|+...++.++=+..
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~ 107 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK---PLARLRLARILLQQGQYDEALAT 107 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 444566778889999999999999999999999977555554 44456778888888877765554
No 43
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.73 E-value=26 Score=41.78 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=51.0
Q ss_pred CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC-cchHHHHHHHHHHHHHHHhcch
Q 001515 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDE 637 (1063)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~ClkkL~~~ 637 (1063)
+.-+....+.-||.++|-.|||+.|+++|+.+-.+|..++ |-.+ ...++|.+-|+-..+..
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~-A~~~Em~alsl~~~~~~ 264 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYL-AGAQEMAALSLLMQGQS 264 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHH-HhHHHHHHHHHHhcCCC
Confidence 3456667788899999999999999999999999999877 6655 55889999999876643
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=56.70 E-value=71 Score=37.32 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=51.7
Q ss_pred HHHHHHHhcCC-eehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHH
Q 001515 566 GAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1063)
Q Consensus 566 ~Ai~~y~~a~R-~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~ 644 (1063)
.|+..|..+=+ .-....+...+|..|+++|+|+.|+..+..++...... ...+..++.|+..+++.++-+..+
T Consensus 20 ~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 20 LAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555431 11122457899999999999999999999999876543 223455667788888876555555
Q ss_pred HHHhc
Q 001515 645 VRLLS 649 (1063)
Q Consensus 645 l~LLs 649 (1063)
-+.+.
T Consensus 94 ~~al~ 98 (356)
T PLN03088 94 EKGAS 98 (356)
T ss_pred HHHHH
Confidence 44443
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=56.50 E-value=16 Score=31.07 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcC-CeehhHHhhHHHHHHHhhcC-CHHHHHHHHHHHHh
Q 001515 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHG-NYDQAAKSYEKVCA 609 (1063)
Q Consensus 564 t~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~g-dY~kA~~~f~~~~~ 609 (1063)
.+.|+..|..+= ....-..+...||..|+.+| +|.+|...|..++.
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555553 22233357899999999999 79999999998875
No 46
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=55.87 E-value=17 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg 615 (1063)
-..+|..|.++|++++|...|..++...-++-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45789999999999999999999998876654
No 47
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=55.67 E-value=34 Score=37.76 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=67.4
Q ss_pred HHHHhhcCHHHHHHHHHH--HHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHH
Q 001515 545 NLLKSLSSVEEFEQKYLE--LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAE 622 (1063)
Q Consensus 545 ~L~~AL~S~e~F~~~Y~~--Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~ 622 (1063)
..+.|+.+=+.|-+.|=+ ....|-.....+ |.+-|.+ -..+|.+|+++|.|..|+.-|..++..|.+.... -.
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l-~~~la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~---~e 213 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTTDATKRLVFL-KDRLAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT---RD 213 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH---HH
Confidence 345565555555555432 233332212222 2333332 4589999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHhcchhhHHHHHH
Q 001515 623 VLPNLAECQKILNDEAGYLLSCV 645 (1063)
Q Consensus 623 ~L~~~a~ClkkL~~~~eYv~~~l 645 (1063)
.|..+.+.+.+||..+++-.+.-
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 88889999999999988877654
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=55.55 E-value=99 Score=37.98 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=76.5
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC--CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhh--hCCcchH
Q 001515 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS--GEGWQDL 619 (1063)
Q Consensus 544 ~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~y~~a~--R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~--~egW~~L 619 (1063)
..|-.++-+...|.+.. .+.+.|++-|.+-- ....+.....++|..+.+.++|+.|..||.+..+-|. -.-=+..
T Consensus 287 ~nLa~ly~~~GKf~EA~-~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAE-EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHHH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 44555556666666654 47888888888821 3444445588999999999999999999999998887 2223345
Q ss_pred HHHHHHHHHHHHHHhcch---hhHHHHHHHHhc
Q 001515 620 LAEVLPNLAECQKILNDE---AGYLLSCVRLLS 649 (1063)
Q Consensus 620 ~~~~L~~~a~ClkkL~~~---~eYv~~~l~LLs 649 (1063)
...+-..+++|+.++|+. .++.+.++..+.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 678889999999999988 456666665553
No 49
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.35 E-value=58 Score=31.64 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhhhhCC--cch--HHHHHHHHHHHHHHHhcchhhHHHHHHHHhccC
Q 001515 587 IAAVCFKHGNYDQAAKSYEKVCALYSGEG--WQD--LLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1063)
Q Consensus 587 LA~l~y~~gdY~kA~~~f~~~~~~Y~~eg--W~~--L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~ 651 (1063)
.|.-+|.+||+-||+.+..++....+++. |-. +.|.|...++.=...-.-+..|+..+++-.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a 70 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA 70 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH
Confidence 57889999999999999999999999888 622 225666666554444444467888887766654
No 50
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=55.05 E-value=57 Score=34.74 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=29.2
Q ss_pred HHHHHHHHhcC----CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCc
Q 001515 565 KGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW 616 (1063)
Q Consensus 565 ~~Ai~~y~~a~----R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW 616 (1063)
+.|+..|.... ....+......+|..||..|||.+|...|...+..|-.+..
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 34444444443 34556666666666666666666666666666666666554
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.61 E-value=53 Score=30.50 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
-.++|..++..|+|++|..+|..+...+...... ...+..++.|+.+.++.++=+...-+++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678999999999999999999999877654322 35566678888888887655555544444
No 52
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.12 E-value=27 Score=26.79 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 001515 586 EIAAVCFKHGNYDQAAKSYE 605 (1063)
Q Consensus 586 dLA~l~y~~gdY~kA~~~f~ 605 (1063)
-+|...|++|+|++|..+|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46899999999999999976
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=49.63 E-value=1.3e+02 Score=30.90 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCe--eh--hHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcch
Q 001515 564 TKGAANNYHCSWWK--RH--GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1063)
Q Consensus 564 t~~Ai~~y~~a~R~--Rs--a~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~ 637 (1063)
.+.|+..|.++-+. .. ...+...+|..|++.|+|++|..+|..++...... ...+..+..|+..+++.
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCh
Confidence 34666666655311 11 12356777777777777777777777777754432 12233445565555543
No 54
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=47.18 E-value=29 Score=38.23 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=42.0
Q ss_pred ehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhc
Q 001515 578 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 635 (1063)
Q Consensus 578 Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~ 635 (1063)
..+......||..||+.|||++|...|+..+..|.++-=. -.++-+.+-|...++
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLTNMALD 120 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHhhhhcc
Confidence 4455567899999999999999999999999999988633 344555555655443
No 55
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=47.07 E-value=29 Score=36.44 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhC
Q 001515 568 ANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1063)
Q Consensus 568 i~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~e 614 (1063)
+..|+.-.-.-+++....++|.+|++.||+++|+..|..+..+....
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH
Confidence 34555444344556778999999999999999999999988775443
No 56
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.80 E-value=78 Score=29.35 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHhhcCCHHHHHHHHHHHHhhhhhCCcch---HHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 590 VCFKHGNYDQAAKSYEKVCALYSGEGWQD---LLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 590 l~y~~gdY~kA~~~f~~~~~~Y~~egW~~---L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
...+.|||..|...+.....+...++|.. -....+...+..+..+|..++=+...-+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999977 3344566677788888888766665554443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=46.58 E-value=91 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=13.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCA 609 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~ 609 (1063)
...+|..++..|+|++|..+|..+..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33445555555555555555555543
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=46.33 E-value=83 Score=32.37 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=36.5
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
.....+|..|+..|+|++|..+|..++....... ..+..++.|+...++.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcccHHH
Confidence 3456789999999999999999999998765543 233444555555554433
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=46.08 E-value=1.9e+02 Score=28.86 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCeeh-hHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHH
Q 001515 565 KGAANNYHCSWWKRH-GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1063)
Q Consensus 565 ~~Ai~~y~~a~R~Rs-a~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~ 643 (1063)
+.|+..|..+-+..- -......+|..+...|+|++|...|..++.. .-++ ...+..+..|+..+|+.++=+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~----~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASH----PEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCC----cHHHHHHHHHHHHcCCHHHHHHH
Confidence 446666666532211 1234578999999999999999999999974 3333 35566778899999999887777
Q ss_pred HHHHhcc
Q 001515 644 CVRLLSL 650 (1063)
Q Consensus 644 ~l~LLs~ 650 (1063)
+-+.+..
T Consensus 115 ~~~Al~~ 121 (144)
T PRK15359 115 FQTAIKM 121 (144)
T ss_pred HHHHHHh
Confidence 6666643
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=44.78 E-value=96 Score=38.10 Aligned_cols=87 Identities=18% Similarity=0.053 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcC-CeehhH-HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHH-HHHHHHHHHHHHHhcchh
Q 001515 562 ELTKGAANNYHCSW-WKRHGV-VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLL-AEVLPNLAECQKILNDEA 638 (1063)
Q Consensus 562 ~Lt~~Ai~~y~~a~-R~Rsa~-~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~-~~~L~~~a~ClkkL~~~~ 638 (1063)
++.++|+......+ +.+.-. ..-.+||..|++.+.|+.|..+|..+..-+..-|=.... ...+..++.-+..+|+.+
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 37777877776665 444443 448999999999999999999999877665555544322 467778888899999999
Q ss_pred hHHHHHHHHh
Q 001515 639 GYLLSCVRLL 648 (1063)
Q Consensus 639 eYv~~~l~LL 648 (1063)
++++..-.++
T Consensus 468 ~a~~~~~~~~ 477 (508)
T KOG1840|consen 468 AAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHH
Confidence 9988876655
No 61
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.04 E-value=32 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHh
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCA 609 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~ 609 (1063)
.|||.-|+..||++.|-.++..++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999985
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.42 E-value=2.3e+02 Score=34.19 Aligned_cols=115 Identities=21% Similarity=0.113 Sum_probs=79.4
Q ss_pred hHHHHhhcCHHHHHHHHHH--HHHHHHHHHHhc---CCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcch
Q 001515 544 PNLLKSLSSVEEFEQKYLE--LTKGAANNYHCS---WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQD 618 (1063)
Q Consensus 544 ~~L~~AL~S~e~F~~~Y~~--Lt~~Ai~~y~~a---~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~ 618 (1063)
+.+..||. +-|+. -.+.||..|+.+ |-.-. ..-..||.+|=+.+|+++|+.+|......+-.+|=..
T Consensus 432 sRlw~aLG------~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 432 SRLWVALG------ECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hHHHHHHH------HHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 56677764 34555 357888889876 22222 3468999999999999999999999999987777655
Q ss_pred HHH-HHHHHHHHHHHHhcchhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 001515 619 LLA-EVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVIS 669 (1063)
Q Consensus 619 L~~-~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~ 669 (1063)
-++ ....-+++-.+++++.++--.+|...++ +....++-..++.++.+
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~---~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK---GETECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---CCchHHHHHHHHHHHHH
Confidence 432 3555577788888888766666665554 32333444466666554
No 63
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.22 E-value=86 Score=34.00 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC
Q 001515 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1063)
Q Consensus 581 ~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg 615 (1063)
..++.=+|+|+++.|+|++|..+|..+......+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 35788999999999999999999999999888777
No 64
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.66 E-value=32 Score=28.84 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~ 610 (1063)
..-||.=||+.|||.+|..+...++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456899999999999999999988863
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.41 E-value=75 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
....+|..++..|+|++|..+|..++.......|. ...+..++.|+.++++.++-+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR---SYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHcCCHHHHHH
Confidence 35788999999999999999999998765444332 3456677777777777644333
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=42.01 E-value=61 Score=41.55 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcC-CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhh----hhhCCcchHHHHHHHHHHHHHHHhcch
Q 001515 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----YSGEGWQDLLAEVLPNLAECQKILNDE 637 (1063)
Q Consensus 563 Lt~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~----Y~~egW~~L~~~~L~~~a~ClkkL~~~ 637 (1063)
-.+.|+..|.++= =.-...-+-+-||.+|+++|+.++|+..+..+... -..++|+. +..|+-..+.-+.+.++.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~-e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP-ERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH-HHHHHHHHHHHHHHhhhH
Confidence 4567777777663 11122233578999999999999999999987622 24567874 455665555556789999
Q ss_pred hhHHHHHHHHhcc
Q 001515 638 AGYLLSCVRLLSL 650 (1063)
Q Consensus 638 ~eYv~~~l~LLs~ 650 (1063)
++|+.+...|+..
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
No 67
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=40.27 E-value=42 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHH
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYE 605 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~ 605 (1063)
....+|..++.+||+++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35679999999999999998874
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.00 E-value=89 Score=33.47 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCC----eehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHH
Q 001515 564 TKGAANNYHCSWW----KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI 633 (1063)
Q Consensus 564 t~~Ai~~y~~a~R----~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clkk 633 (1063)
.+.|+..|...-. ..........+|..|+..|+|++|...|..++..+.. ++..- ..+-+...|+.+
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~--~a~~~~g~~~~~ 119 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD--YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH--HHHHHHHHHHHH
Confidence 3455555554421 1223345677888888888888888888888887764 33221 234444555543
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=39.86 E-value=1e+02 Score=29.74 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.4
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
.....+|..++..|+|++|...|..+......+ ..+...++.|+.++++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999998865433 3444556666666666543
No 70
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.27 E-value=91 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=39.2
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eY 640 (1063)
.+...||.+++..|+|++|+..|..+ ..+.|.. .......+++...|+.++=
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~---~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQI----PDEAFKA---LAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHH---HHHHHHHHHHHHCCCHHHH
Confidence 55778999999999999999999663 3456764 3555677787777776543
No 71
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=56 Score=38.46 Aligned_cols=67 Identities=30% Similarity=0.392 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcc---------hHHHHHHHHHHHHHHHhcchhhHHHHHHHHhccC
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ---------DLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~---------~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~ 651 (1063)
.+=|..||++|+|..|..-|..+..+...+.=. .+-...+..++-|+-||++...-+..|.+.|...
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345788999999999999999988877633322 2234566778889999999999999999988654
No 72
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.03 E-value=2.2e+02 Score=31.70 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhH
Q 001515 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1063)
Q Consensus 561 ~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eY 640 (1063)
..|.++|...|..+|+--.|.. ..+=|.=-..-.+++.|+.+|++.+.-+.+++-...+.. .|-.|.+-|-+...|
T Consensus 91 vdl~eKAs~lY~E~GspdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---l~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---LYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---HHHHhhhHhhhhHHh
Confidence 3467889999999997777654 344555557888999999999999999999988866654 445566666666666
Q ss_pred HHHHHHHh
Q 001515 641 LLSCVRLL 648 (1063)
Q Consensus 641 v~~~l~LL 648 (1063)
...++.++
T Consensus 167 ~Eaa~a~l 174 (308)
T KOG1585|consen 167 TEAATAFL 174 (308)
T ss_pred hHHHHHHH
Confidence 66665554
No 73
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.50 E-value=66 Score=29.05 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHH
Q 001515 589 AVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNL 627 (1063)
Q Consensus 589 ~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~ 627 (1063)
..-=..|+|++|..+|.+++.+|..+.=..+--.++..+
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~ 52 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKL 52 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 334467999999999999999998865333333333333
No 74
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=36.65 E-value=43 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001515 221 ESLAFMFEMAHLHEDALREYDELELCY 247 (1063)
Q Consensus 221 E~LA~~fe~~~L~edAL~~YdEL~~~~ 247 (1063)
-.+|.+|...|.+++|...|+++-..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 468999999999999999999987654
No 75
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=36.36 E-value=50 Score=29.48 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.3
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEK 606 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~ 606 (1063)
....-+|..++++|+|++|...|..
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4455679999999999999999875
No 76
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=35.53 E-value=1.1e+02 Score=35.21 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=67.0
Q ss_pred hhccCCChhHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhh-----
Q 001515 536 ALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----- 610 (1063)
Q Consensus 536 ~~~~~i~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~----- 610 (1063)
+..+-..+|.+.+++++..+=......|++ ++|=.--..-.....|.+-|..|+|+.|..|+...-.+
T Consensus 91 piv~~le~Pd~~~~~~~~k~~~~~l~~L~e-------~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d 163 (432)
T KOG2758|consen 91 PIVKVLENPDLIAALRSDKDRVQNLQHLQE-------HYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPD 163 (432)
T ss_pred HHHHHHcCHHHHHHHHhhhhHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcc
Confidence 334456789999999877664333333332 22311111123678999999999999999988765543
Q ss_pred --hhhCCcchHHHHHHHHHHHH-HHHhcchhhHHHH
Q 001515 611 --YSGEGWQDLLAEVLPNLAEC-QKILNDEAGYLLS 643 (1063)
Q Consensus 611 --Y~~egW~~L~~~~L~~~a~C-lkkL~~~~eYv~~ 643 (1063)
|..-=|.-|.+.+|..=-+- .+.|++..+|+..
T Consensus 164 ~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 164 RNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 66667999999888765544 4467877777763
No 77
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.52 E-value=1.3e+02 Score=33.52 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=56.8
Q ss_pred hcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Q 001515 593 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND--EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISL 670 (1063)
Q Consensus 593 ~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~--~~eYv~~~l~LLs~~~~~~s~~~R~~~~~ell~~ 670 (1063)
.+++|++|..++.+-+..+.+.|=..-++++-..+++++.+-+. .++.+.-..++++... .++.+|..+.++.++-
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP--PEEPERKKFIKAAIKW 79 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS---TT-TTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHH
Confidence 57899999999999999999998778899999999999998443 3566666666665432 2233488888888877
Q ss_pred H
Q 001515 671 A 671 (1063)
Q Consensus 671 ~ 671 (1063)
+
T Consensus 80 S 80 (260)
T PF04190_consen 80 S 80 (260)
T ss_dssp H
T ss_pred H
Confidence 7
No 78
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=35.30 E-value=78 Score=38.03 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcC----CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001515 563 LTKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1063)
Q Consensus 563 Lt~~Ai~~y~~a~----R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~ 610 (1063)
-.+.|+..|..+= ..-.+......+|+.|-++|++++|+..|..++..
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777776653 22222245788888888888888888888888886
No 79
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=34.07 E-value=1.5e+02 Score=37.16 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCC-eehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 564 t~~Ai~~y~~a~R-~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
.+.|+..|.++-. ...-......+|..++++|+|++|..+|..++..+.... .++..+..++..+++.++=+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP------DVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHH
Confidence 4556666666641 112223467889999999999999999999888765543 233445556666665544333
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.33 E-value=1.1e+02 Score=37.08 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=44.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
...|.=+|+.|+|++|..||+.++...-.| ...-...+-|+..+++++.-++-|.+.|.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 345667899999999999999999877776 33444556677777777777777766664
No 81
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=31.65 E-value=54 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Q 001515 221 ESLAFMFEMAHLHEDALREYDELE 244 (1063)
Q Consensus 221 E~LA~~fe~~~L~edAL~~YdEL~ 244 (1063)
..||.+|..+|-+++|...|.+.-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 369999999999999999999844
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=31.16 E-value=1.4e+02 Score=38.52 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=43.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
+-.|+|..+...|.|..|..||..++.. ++|.. +.+-...++|++.++.-++-+.
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~---~~~~~--~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNR---EGYQN--AFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcC---ccccc--hhhhHHHHHHHHHHhhHHHHHH
Confidence 3578999999999999999999999885 44544 4555678899999888754333
No 83
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=30.91 E-value=83 Score=34.90 Aligned_cols=71 Identities=18% Similarity=0.095 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHH
Q 001515 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1063)
Q Consensus 565 ~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~ 643 (1063)
..++..|........ .+...+|..|+..|+|++|+.+|...+..... . ..++..|++++...|+.++=+.+
T Consensus 200 ~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d-----~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 200 REALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D-----PLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHCcCHH--HHHHHHHHHhcccccccccccccccccccccc-c-----ccccccccccccccccccccccc
Confidence 344455555542222 35678999999999999999999998863332 2 34666899999888887655444
No 84
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=5.8e+02 Score=29.80 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHh-----hhhhCCcchHHHHHHHHHHHHHHHhcc
Q 001515 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA-----LYSGEGWQDLLAEVLPNLAECQKILND 636 (1063)
Q Consensus 562 ~Lt~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~-----~Y~~egW~~L~~~~L~~~a~ClkkL~~ 636 (1063)
+..+++++..+.+.-.-.+..+..++|.+|...||..+|...+.+.-. .+...+=...-..+=..| ++..++
T Consensus 96 ~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY---yk~~~d 172 (380)
T KOG2908|consen 96 EFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY---YKKIGD 172 (380)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH---HHHHHh
Confidence 456777777887774345556799999999999999999999988766 333332222222222233 445788
Q ss_pred hhhHHHHHHHHhccCC-CCCCHHHHHH
Q 001515 637 EAGYLLSCVRLLSLDK-GLFSTKERQA 662 (1063)
Q Consensus 637 ~~eYv~~~l~LLs~~~-~~~s~~~R~~ 662 (1063)
-.+|.+.||.-|++.. ...+..+++.
T Consensus 173 ~a~yYr~~L~YL~~~d~~~l~~se~~~ 199 (380)
T KOG2908|consen 173 FASYYRHALLYLGCSDIDDLSESEKQD 199 (380)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHH
Confidence 8999999999898752 2244555443
No 85
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.86 E-value=2.2e+02 Score=32.88 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHh
Q 001515 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1063)
Q Consensus 585 ~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LL 648 (1063)
..+|..+++.|++++|..+|..+....... ......+++++.+.++.++=+...-+++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666777777777777777776654321 1233445566666666655444444333
No 86
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=29.71 E-value=1.9e+02 Score=35.28 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcC----Ceehh-HHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHH-HHHHHHHhcc
Q 001515 563 LTKGAANNYHCSW----WKRHG-VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN-LAECQKILND 636 (1063)
Q Consensus 563 Lt~~Ai~~y~~a~----R~Rsa-~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~-~a~ClkkL~~ 636 (1063)
-.+.|++.|..|. -+|.. ..+..|+|..|..+.||++|+.+|..+.. ++.|+- .+... .+-|+-.+++
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSk---a~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSK---AFYAYLAAACLLMLGR 355 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHH---HHHHHHHHHHHHhhcc
Confidence 5678888888654 12333 35599999999999999999999998887 889973 22222 2345555665
Q ss_pred h
Q 001515 637 E 637 (1063)
Q Consensus 637 ~ 637 (1063)
.
T Consensus 356 ~ 356 (468)
T PF10300_consen 356 E 356 (468)
T ss_pred c
Confidence 5
No 87
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.62 E-value=6.4e+02 Score=28.27 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=58.2
Q ss_pred HHHHHHHHhcC-CeehhHHhhHHHHHHHhh-cCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFK-HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 565 ~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~-~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
+.|=.-|+.|. +.+..-.+-+..|.+-|+ .+|.+.|..+|...+..|..+ ..+...|++.+.++++. +-++
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~~~d~-~~aR 90 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIKLNDI-NNAR 90 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-H-HHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhCcH-HHHH
Confidence 33444455553 334444667788888666 788888999999999999886 35566888888888754 4445
Q ss_pred HHHHHhccCCCCCCHHH-HHHHHHHHHHH
Q 001515 643 SCVRLLSLDKGLFSTKE-RQAFQSEVISL 670 (1063)
Q Consensus 643 ~~l~LLs~~~~~~s~~~-R~~~~~ell~~ 670 (1063)
...+-.- ..+..+. ...+|+.++++
T Consensus 91 ~lfer~i---~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 91 ALFERAI---SSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHC---CTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHH---HhcCchhHHHHHHHHHHHH
Confidence 4443221 1122223 34567766653
No 88
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=29.45 E-value=4.3e+02 Score=24.12 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=29.8
Q ss_pred eEEEEEEEeCCCCceEee--E---EEEEEEecccCCCCce-EEe--------ecCceEeeCCccEE-EEEcCCCc--Cee
Q 001515 705 GTLSVTVWSGFPDDITVD--T---LSLTLMATYNADEGAK-ALN--------TSTATVLKPGRNTI-TVDLPPQK--PGS 767 (1063)
Q Consensus 705 ~~L~V~l~s~lP~~I~~d--~---v~l~L~~~~~~~~~~~-~l~--------s~~~~~L~PG~Nki-~L~~~~~~--~G~ 767 (1063)
+.+.++|.|.-..++++. + ..+.+.+. +|.. |-. .....+|.||+... ....+... +|.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~----~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~ 77 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK----EGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGE 77 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T----T--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC----CCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCce
Confidence 345667777755554433 1 33333332 3333 221 33567899999774 45555555 999
Q ss_pred EEEE
Q 001515 768 YVLG 771 (1063)
Q Consensus 768 y~l~ 771 (1063)
|.+.
T Consensus 78 Y~~~ 81 (82)
T PF12690_consen 78 YTLE 81 (82)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=29.36 E-value=2.3e+02 Score=28.77 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhC
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~e 614 (1063)
+...||.+|.++|++++|..+|..++......
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 57889999999999999999999999764443
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=29.02 E-value=2.2e+02 Score=32.77 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 001515 171 NFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDE 242 (1063)
Q Consensus 171 e~W~~li~klK~~iL~sFd~rv~~yee~ir~~~~~r~~p~WnF~~~FilKE~LA~~fe~~~L~edAL~~YdE 242 (1063)
.++..++.-+....-.-++..+..|++-++.- |+ +.-. .-.||.+|...|.+++|+..|+.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~------p~-~~~~----~~~la~~~~~~g~~~~A~~~~~~ 94 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD------PE-TVEL----HLALGNLFRRRGEVDRAIRIHQN 94 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC------cc-cHHH----HHHHHHHHHHcCcHHHHHHHHHH
Confidence 34445555444444455666666776666531 22 2222 23578888888888888876654
No 91
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=28.94 E-value=1.3e+02 Score=37.79 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 564 t~~Ai~~y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
-+.|+..|..+=+..--......+|..|+.+|+|++|+..+..++..-... ...+...+.|+..+++.++
T Consensus 143 ~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~------~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY------SKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 345666666654333334455666667777777777777777666543221 2345556666666666543
No 92
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=89 Score=34.61 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCChhHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC-------CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHh---
Q 001515 540 TISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW-------WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA--- 609 (1063)
Q Consensus 540 ~i~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~y~~a~-------R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~--- 609 (1063)
|+.+..|-+.+++.+-..-.++-|.-.+=++|.+-. .+++.-. .-+=|+-.|..|+|.+|.+-|.++.-
T Consensus 131 glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~-l~q~GN~lfk~~~ykEA~~~YreAi~~l~ 209 (329)
T KOG0545|consen 131 GLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPV-LHQEGNRLFKLGRYKEASSKYREAIICLR 209 (329)
T ss_pred CCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHH-HHHhhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 456677777777777766666666667777777665 3444433 34567788999999999998887663
Q ss_pred ------hhhhCCcchHH---HHHHHHHHHHHHHhcchhhHHHHHHHHhccCC
Q 001515 610 ------LYSGEGWQDLL---AEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1063)
Q Consensus 610 ------~Y~~egW~~L~---~~~L~~~a~ClkkL~~~~eYv~~~l~LLs~~~ 652 (1063)
--.+.-|-.|. +-+|..|+.|+-+.++--+-+..|.++|..+.
T Consensus 210 ~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 210 NLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 23456688877 46788898898777777777888999997553
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.87 E-value=1.9e+02 Score=29.39 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=45.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
....+|..+..+|+|++|...|..++...... . -...++..++.|+.++++.++-+..+-+.+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--Y-DRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--h-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677889999999999999999998764322 1 1234667777888888887665555544443
No 94
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=26.64 E-value=1.7e+02 Score=37.33 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=13.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~ 610 (1063)
...+|..+...|+ .+|+.++..++..
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 4445555555555 5555555555543
No 95
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=26.51 E-value=2e+02 Score=36.55 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHHHHHhc
Q 001515 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 583 L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
....+|..++..|+|++|..+|..++...... .++..++.|+.++++.++-+...-+++.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888899999999999998888765443 3444567777777776655555444443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=26.37 E-value=2.3e+02 Score=32.24 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=39.3
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~~~ 644 (1063)
.+..-+|..||++|++++|..++...+..+... ..+.......++.|+...|+.++=+...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456778889999999999999999888766431 1122233344566666666665444433
No 97
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.93 E-value=2e+02 Score=26.08 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhC
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~e 614 (1063)
-+..|...=+.|+|++|+.+|.+.+..+..-
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3456777778999999999999999887653
No 98
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.83 E-value=86 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.001 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH
Q 001515 220 KESLAFMFEMAHLHEDALREYDELEL 245 (1063)
Q Consensus 220 KE~LA~~fe~~~L~edAL~~YdEL~~ 245 (1063)
|-.||+.|-.||-+|.|-...+|+-.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56899999999999999998888764
No 99
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.71 E-value=2.3e+02 Score=35.47 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHhhcC-HHHHHHHHHHHHHHHHHHHHhcC-CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHH----------hhhh
Q 001515 545 NLLKSLSS-VEEFEQKYLELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVC----------ALYS 612 (1063)
Q Consensus 545 ~L~~AL~S-~e~F~~~Y~~Lt~~Ai~~y~~a~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~----------~~Y~ 612 (1063)
.|.+.++. .+..+..+.--+..|+..|.+.- .+.-.-.+..++|..||.++||.+|..+|..+- +.|.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 34444332 34555566667888999998853 222222778999999999999999999999775 3566
Q ss_pred hCCcchHHHHHHHHHHH
Q 001515 613 GEGWQDLLAEVLPNLAE 629 (1063)
Q Consensus 613 ~egW~~L~~~~L~~~a~ 629 (1063)
.-=|++=...-|.++++
T Consensus 395 T~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 66666555555555543
No 100
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=23.41 E-value=96 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001515 220 KESLAFMFEMAHLHEDALREYDELELCY 247 (1063)
Q Consensus 220 KE~LA~~fe~~~L~edAL~~YdEL~~~~ 247 (1063)
...||..|...|.+++|+..|.+.-...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4689999999999999999988876554
No 101
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=22.62 E-value=1.2e+02 Score=23.67 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH
Q 001515 220 KESLAFMFEMAHLHEDALREYDELELC 246 (1063)
Q Consensus 220 KE~LA~~fe~~~L~edAL~~YdEL~~~ 246 (1063)
...||+.|...|.+++|...|+..-..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357999999999999999998886554
No 102
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.49 E-value=1.7e+02 Score=29.85 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=33.9
Q ss_pred CeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCC
Q 001515 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1063)
Q Consensus 576 R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~eg 615 (1063)
-...+...-.+||-.||..|+|.+|+..++..+..+-.+-
T Consensus 42 ~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 42 FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3456667889999999999999999999999998776554
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.36 E-value=2e+02 Score=37.61 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred ChhHHHHhhcCHHHHHHHHHHHHHHHHHH--HHhcCCeehhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhC
Q 001515 542 SNPNLLKSLSSVEEFEQKYLELTKGAANN--YHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1063)
Q Consensus 542 ~~~~L~~AL~S~e~F~~~Y~~Lt~~Ai~~--y~~a~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~e 614 (1063)
.+|.+..-|.+-=-|...|....+.|-.. ++.++-+++ .--.+||.-|+.+|||++|..||+..+..=..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a--es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA--ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 56888888888888888887744444333 333333333 226899999999999999999999888643333
No 104
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=22.09 E-value=4.9e+02 Score=25.54 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=27.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcch
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~ 637 (1063)
...+|..+...|+|++|+.++..++..+--+ -.+-..+.+|+..+|+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCH
Confidence 4455666677777888888887777653321 22334555666666665
No 105
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=21.98 E-value=7.2e+02 Score=30.55 Aligned_cols=145 Identities=15% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceE--Eee------cCceEeeCCccEEE-----EEcCCCcCeeE
Q 001515 702 GDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKA--LNT------STATVLKPGRNTIT-----VDLPPQKPGSY 768 (1063)
Q Consensus 702 ~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~--l~s------~~~~~L~PG~Nki~-----L~~~~~~~G~y 768 (1063)
+....+...+.+.-|.++.+.++++.+.+. ++... +.. .....+.|+...-. +.+.....+.
T Consensus 355 ~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~- 429 (554)
T PF07919_consen 355 NQPWCLNSDIESFAPEPLEIEDISLEVLSS----NGGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDD- 429 (554)
T ss_pred CCCeEEEccceecCCCceEEEEEEEEEecC----CCceeeeeccccccCCCccceeCcccccccccccccccccccccc-
Confidence 455678888999999999999999999865 22221 111 12344555543211 1100000000
Q ss_pred EEEEEEEEEcceEEEeccccCCCCCCCCCcccccCCCCCeEEEEcCCCccceEeeecCccccCCceEEEEEEEcCccccc
Q 001515 769 VLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLK 848 (1063)
Q Consensus 769 ~l~~l~i~ig~l~F~s~~f~~~~~~~~~~~~~~e~~~~p~i~v~~~~~~~~L~a~~~~P~Li~~~q~V~l~I~sg~~~i~ 848 (1063)
.+-.+..|.+.+ .|+...+..... ..--.-.-|.+.|...++ .+.|...+..-+|....+.++|.|.+..+-
T Consensus 430 --~~~~~~~g~~~I---~WrR~~~~s~~~-~~~t~l~lP~~~v~~~~~--~v~~~~p~~~~~~~~~~l~~~I~N~T~~~~ 501 (554)
T PF07919_consen 430 --RRNVTLLGSLVI---KWRRNSSNSSDP-VVTTPLPLPRVNVPSSPL--RVLASVPPSAIVGEPFTLSYTIENPTNHFQ 501 (554)
T ss_pred --CccceeEEEEEE---EEEECCCCCCCc-eEEEEeecCceEccCCCc--EEEEecCCccccCcEEEEEEEEECCCCccE
Confidence 011122333332 233310100000 000011125666666644 666666666788899999999999988877
Q ss_pred ceEEEEecCCC
Q 001515 849 GAILQIDTGPG 859 (1063)
Q Consensus 849 ~~~L~l~~s~g 859 (1063)
...+++..+++
T Consensus 502 ~~~~~me~s~~ 512 (554)
T PF07919_consen 502 TFELSMEPSDD 512 (554)
T ss_pred EEEEEEccCCC
Confidence 77777644443
No 106
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.51 E-value=4.9e+02 Score=23.42 Aligned_cols=64 Identities=28% Similarity=0.560 Sum_probs=39.1
Q ss_pred cccCCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceEEeecCc-eEeeCCccE-EEEEcCCCcCeeEEE
Q 001515 698 ELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTA-TVLKPGRNT-ITVDLPPQKPGSYVL 770 (1063)
Q Consensus 698 ~~~~~d~~~L~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~s~~~-~~L~PG~Nk-i~L~~~~~~~G~y~l 770 (1063)
....++.+.+.+.|.|.-... ...+.+++... +... .... -.|.||... +.|.......|.|.+
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~-----~~~~--~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i 79 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTAD--AENVTVRLYLD-----GNSV--STVTIPSLAPGESETVTFTWTPPSPGSYTI 79 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS---BEEEEEEEEET-----TEEE--EEEEESEB-TTEEEEEEEEEE-SS-CEEEE
T ss_pred cccCCCEEEEEEEEEECCCCC--CCCEEEEEEEC-----Ccee--ccEEECCcCCCcEEEEEEEEEeCCCCeEEE
Confidence 345688899999999985554 56777777642 2222 2222 268999855 667777778899873
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=21.42 E-value=1.3e+02 Score=31.88 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCee-hhHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhh
Q 001515 565 KGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1063)
Q Consensus 565 ~~Ai~~y~~a~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~ 613 (1063)
+.|...|..+-+.. .-.....-+|..++++|||++|..+|..++.....
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44555555543211 11233566777777777777777777777765554
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=21.00 E-value=2.6e+02 Score=31.76 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhh
Q 001515 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1063)
Q Consensus 581 ~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~e 639 (1063)
..+..-+|..+.++|+|++|...+..++. .+-. ...+|-..+-|...+|...+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~---~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPN---DPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CC---HHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccC---CHHHHHHHHHHHHHhCCChh
Confidence 35567899999999999999999999764 2222 36788899999999988843
No 109
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.89 E-value=88 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1063)
Q Consensus 584 ~~dLA~l~y~~gdY~kA~~~f~~~~~~ 610 (1063)
-.+|+.||+.+|.+.+|+.++......
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 467999999999999999999998884
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.57 E-value=2.3e+02 Score=28.26 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCeeh-hHHhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhh-CCcchHHHHHHH
Q 001515 564 TKGAANNYHCSWWKRH-GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDLLAEVLP 625 (1063)
Q Consensus 564 t~~Ai~~y~~a~R~Rs-a~~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~-egW~~L~~~~L~ 625 (1063)
.+.|+..|..+-+..- --.....+|..+...|++++|...|..++..--. ..|+.+.+.++.
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3457777777753222 2244788999999999999999999999875443 345555544443
No 111
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=20.43 E-value=3.3e+02 Score=26.78 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeehhHHh--------------hHHHHHHHhhcCCHHHHHHHHHHHHhhhhh
Q 001515 553 VEEFEQKYLELTKGAANNYHCSWWKRHGVVL--------------DGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1063)
Q Consensus 553 ~e~F~~~Y~~Lt~~Ai~~y~~a~R~Rsa~~L--------------~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~ 613 (1063)
++.+.+.|.......+..+...|+...+..+ ...+-..|+..|++..|...|..+...+.+
T Consensus 54 r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 54 RERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888855554432 233445566666666666666666555443
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.19 E-value=2.9e+02 Score=31.22 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=45.1
Q ss_pred HhhHHHHHHHhhcCCHHHHHHHHHHHHhhhhhCCcchHHHHHHHHHHHHHHHhcchhhHHH
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 582 ~L~~dLA~l~y~~gdY~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ClkkL~~~~eYv~ 642 (1063)
.+.--+|+.+.++|+|++|..++..++..+... -.+|....-|..++|.+.+-+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHHHH
Confidence 455668999999999999999999999876665 6788888889988888844333
Done!