Query 001515
Match_columns 1063
No_of_seqs 204 out of 255
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 16:37:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001515.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_816-820//hhsearch_pdb/001515hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 32.8 10.8 86 563-648 137-222 (307)
2 1qqe_A Vesicular transport pro 1.0 1 1 31.6 11.1 68 582-649 159-227 (292)
3 2v5f_A Prolyl 4-hydroxylase su 1.0 1 1 30.4 9.7 88 584-671 8-96 (104)
4 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 29.2 13.0 75 565-642 179-253 (307)
5 3q15_A PSP28, response regulat 1.0 1 1 29.1 10.5 34 581-614 261-294 (378)
6 3ro3_A PINS homolog, G-protein 1.0 1 1 29.1 11.0 77 566-642 74-150 (164)
7 3gw4_A Uncharacterized protein 1.0 1 1 28.3 11.0 85 562-646 87-172 (203)
8 3ro3_A PINS homolog, G-protein 1.0 1 1 28.1 11.1 82 563-644 31-112 (164)
9 3k9i_A BH0479 protein; putativ 1.0 1 1 28.1 8.3 65 581-651 27-91 (117)
10 3ulq_A Response regulator aspa 1.0 1 1 27.9 11.4 71 565-636 248-318 (383)
No 1
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=32.81 Aligned_cols=86 Identities=16% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999885177042478638889999641898999999999996661089510799899999999998245132999
Q 001515 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 563 Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eYv~ 642 (1063)
.-++|+..+...+..+.+..+...+|.+|..+|+|++|..+|..++..+...+........+...+.|+..+++.++-+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999984798547999999999999981889999999999999999867854799999999999997398899999
Q ss_pred HHHHHH
Q ss_conf 999982
Q 001515 643 SCVRLL 648 (1063)
Q Consensus 643 ~~l~LL 648 (1063)
..-+.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHH
T ss_conf 999973
No 2
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=31.62 Aligned_cols=68 Identities=18% Similarity=0.060 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 863888999964189899999999999666108951-07998999999999982451329999999821
Q 001515 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ-DLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1063)
Q Consensus 582 ~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~-~L~~~iL~~~a~ClkkL~~~~eYv~~~l~LLs 649 (1063)
.+...+|.+|+.+|+|++|+.+|..+.......+.. ......+..+..|+..+++.++-+..+-+.+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999998088999999999999987369745179999999999999872999999999999986
No 3
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=1.00 E-value=1 Score=30.43 Aligned_cols=88 Identities=16% Similarity=0.073 Sum_probs=63.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 38889999641898999999999996661089-51079989999999999824513299999998213779899899999
Q 001515 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQA 662 (1063)
Q Consensus 584 ~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~eg-W~~L~~~iL~~~a~ClkkL~~~~eYv~~~l~LLs~~~~~~s~~eR~~ 662 (1063)
-.+||..+|..|+|..|...|..++..+..+. +..-...++..++.|+.++++.+.-+...-+++...+..........
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999873364999999999997410267873339999999999999855899999999999851999899994599
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q 001515 663 FQSEVISLA 671 (1063)
Q Consensus 663 ~~~ell~~~ 671 (1063)
+++.+++..
T Consensus 88 ~~~~~~~~~ 96 (104)
T 2v5f_A 88 YFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
T ss_conf 999999754
No 4
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=29.18 Aligned_cols=75 Identities=15% Similarity=-0.036 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 999999885177042478638889999641898999999999996661089510799899999999998245132999
Q 001515 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eYv~ 642 (1063)
++++..+...+-..........+|..|+.+|+|.+|..+|..++ .... ....-+...+..+++.. ..++.+.|-.
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~-~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG-FSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT-STTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCC-CCCCHHHHHHHHHHHHH-HHCCHHHHHH
T ss_conf 99999999867854799999999999997398899999999973-7888-88878999999999999-8259999999
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=29.12 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 7863888999964189899999999999666108
Q 001515 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1063)
Q Consensus 581 ~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~e 614 (1063)
......+|..|+..|+|++|..++..++......
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998899899999999999999883
No 6
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=1.00 E-value=1 Score=29.05 Aligned_cols=77 Identities=8% Similarity=-0.179 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999885177042478638889999641898999999999996661089510799899999999998245132999
Q 001515 566 GAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 566 ~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eYv~ 642 (1063)
.++..+...+...........+|..++..|+|++|..++..++......+........+..++.|+..+++.++-+.
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999887099499999999998999998658999999999999998726617588999999999998668799999
No 7
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=1.00 E-value=1 Score=28.30 Aligned_cols=85 Identities=14% Similarity=0.006 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHCC-CEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999988517-70424786388899996418989999999999966610895107998999999999982451329
Q 001515 562 ELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1063)
Q Consensus 562 ~Lt~~Ai~~yk~~~-R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eY 640 (1063)
...+.++..+...+ ...........+|..|+.+|+|++|..+|..++......+........+..++.++..+++.++-
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999998838527899999998999999828899999999999988884656588899999999999987599999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 001515 641 LLSCVR 646 (1063)
Q Consensus 641 v~~~l~ 646 (1063)
....-+
T Consensus 167 ~~~~~~ 172 (203)
T 3gw4_A 167 QQHWLR 172 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 8
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=1.00 E-value=1 Score=28.10 Aligned_cols=82 Identities=12% Similarity=-0.013 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999885177042478638889999641898999999999996661089510799899999999998245132999
Q 001515 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1063)
Q Consensus 563 Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eYv~ 642 (1063)
..++++..+...+...........+|..|+.+|+|++|..++..+...+...+.......++..++.|+..+++.++-+.
T Consensus 31 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 31 AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998487317999999999999980888899999999999988709949999999999899999865899999
Q ss_pred HH
Q ss_conf 99
Q 001515 643 SC 644 (1063)
Q Consensus 643 ~~ 644 (1063)
..
T Consensus 111 ~~ 112 (164)
T 3ro3_A 111 YH 112 (164)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=1.00 E-value=1 Score=28.08 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 78638889999641898999999999996661089510799899999999998245132999999982137
Q 001515 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1063)
Q Consensus 581 ~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~~~eYv~~~l~LLs~~ 651 (1063)
..+...||..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+...
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999998378999999999998709995------3799999999998498899999999998729
No 10
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=27.92 Aligned_cols=71 Identities=21% Similarity=0.003 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999885177042478638889999641898999999999996661089510799899999999998245
Q 001515 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1063)
Q Consensus 565 ~~Ai~~yk~~~R~Rsa~~L~~dLA~lyy~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~iL~~~a~ClkkL~~ 636 (1063)
++|+..+...+-..........+|..|+.+|+|++|..+|..++......+-...... +..+..+....++
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHCCCC
T ss_conf 9999989861655139999999999998879979999999999999988599999999-9999998838874
Done!