Query 001516
Match_columns 1062
No_of_seqs 394 out of 1537
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 17:00:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001516.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_816-820//hhsearch_pdb/001516hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 1.0 1 1 124.9 5.1 71 48-118 9-86 (87)
2 2lq6_A Bromodomain-containing 1.0 1 1 99.5 4.3 64 822-885 10-84 (87)
3 2ku3_A Bromodomain-containing 1.0 1 1 85.1 3.2 57 700-756 11-68 (71)
4 2l43_A N-teminal domain from h 1.0 1 1 83.3 3.8 57 700-756 20-77 (88)
5 1wev_A Riken cDNA 1110020M19; 1.0 1 1 78.2 2.3 60 700-759 11-77 (88)
6 4gne_A Histone-lysine N-methyl 1.0 1 1 73.8 6.7 77 702-795 12-96 (107)
7 2yt5_A Metal-response element- 1.0 1 1 71.6 3.6 53 703-755 4-62 (66)
8 2e6r_A Jumonji/ARID domain-con 1.0 1 1 67.7 3.0 54 700-754 11-66 (92)
9 1xwh_A Autoimmune regulator; P 1.0 1 1 66.1 4.2 54 700-757 3-58 (66)
10 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 65.1 5.3 53 699-755 19-73 (88)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=124.90 Aligned_cols=71 Identities=30% Similarity=0.551 Sum_probs=60.0
Q ss_pred CCCHHHHCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHHHCCCEEEECCC------CCCCCEEEEECCCCCCCCCC
Q ss_conf 571101023323201144-682342898997861023423511941987152------48866037554797778899
Q 001516 48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGK------YGCNNVELRAFCAKHSDIQD 118 (1062)
Q Consensus 48 ~~I~~~r~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~aG~~~e~~~~------~g~~~~~~~afC~~Hr~~~~ 118 (1062)
-+|++.||+|+|.||+++ .||||||+.++|.++|||+||+.+|++|++... .....+.+.+||++|+|...
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~ 86 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS 86 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred CCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEECEECCCCCCCCC
T ss_conf 477869954999279998996767349999888693889987897157601234456776566327739969898697
No 2
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=99.52 Aligned_cols=64 Identities=34% Similarity=0.785 Sum_probs=53.4
Q ss_pred CCCCC--CCCCCCCCCC-CCEEEECCCCCCCCCCCHHHHHHCCCEEEEEEC--------CCCCCCEECCCCCCHH
Q ss_conf 65788--8411003586-780554598675532346524413947999407--------9721121436765524
Q 001516 822 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST--------GGNFQHKAYCEKHSLE 885 (1062)
Q Consensus 822 ~I~k~--k~~C~iC~~k-~GAcIqC~~~~C~~~FHvtCA~~aG~~~~~k~~--------~g~i~~~iyC~kHs~~ 885 (1062)
+|++. +++|+||+++ .||||+|..++|.++|||+||+++|++|+++.. .+.+.+.+||++|+|.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred CCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCEECEECCCCCCC
T ss_conf 778699549992799989967673499998886938899878971576012344567765663277399698986
No 3
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=85.12 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89899875721488878-9998799056683003225267646888501234202224
Q 001516 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 756 (1062)
Q Consensus 700 ~~ke~~~~C~VC~~~E~-~~N~II~Cd~C~iaVHq~CYGi~~ip~g~WlCd~C~~~~~ 756 (1062)
....++..|.||.+.++ ..|.||+||+|..+||+.|||++.+|+++|+|..|....+
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6899979887889988778888888889987000304898867899769955838484
No 4
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=83.26 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89899875721488878-9998799056683003225267646888501234202224
Q 001516 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 756 (1062)
Q Consensus 700 ~~ke~~~~C~VC~~~E~-~~N~II~Cd~C~iaVHq~CYGi~~ip~g~WlCd~C~~~~~ 756 (1062)
...+++..|.||.+.+. ..|.||+||+|..+||+.|||++.+|++.|+|..|.....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 7678899177689989779888878999973552204898866899509812528444
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=78.25 Aligned_cols=60 Identities=25% Similarity=0.615 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC
Q ss_conf 89899875721488878-999879905668300322526764------6888501234202224899
Q 001516 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEELLSSRS 759 (1062)
Q Consensus 700 ~~ke~~~~C~VC~~~E~-~~N~II~Cd~C~iaVHq~CYGi~~------ip~g~WlCd~C~~~~~~~~ 759 (1062)
+..+++.+|.||...+. ..|.||+||+|..+||+.||+.+. +|.+.|+|..|........
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHC
T ss_conf 3478979587889988889982677799989586754888654444678898856866406465432
No 6
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=73.80 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899875721488878999879905--668300322526764688850123420222489989998776689876544445
Q 001516 702 KEHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSL 779 (1062)
Q Consensus 702 ke~~~~C~VC~~~E~~~N~II~Cd--~C~iaVHq~CYGi~~ip~g~WlCd~C~~~~~~~~s~~~~~~~~~~p~~~~~C~L 779 (1062)
.+++.+|.||.+ +++||.|| +|...+|..|+|+..+|.+.|+|..|.-..-.+ + ..+.|.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k------------~-~~~~C~~ 74 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS------------A-AVSFCEF 74 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS------------B-CCEECSS
T ss_pred CCCCCCCCCCCC----CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC------------C-CCCCCCC
T ss_conf 889799984799----7847577999999265225186875799888898999881779------------8-9867477
Q ss_pred CCC------CCCCCEECCCCCH
Q ss_conf 899------9987310579840
Q 001516 780 CGG------TTGAFRKSANGQW 795 (1062)
Q Consensus 780 Cp~------~gGALK~T~~g~W 795 (1062)
||. ..|+|+.+....|
T Consensus 75 Cp~sfC~~c~~g~l~~~~~~~~ 96 (107)
T 4gne_A 75 CPHSFCKDHEKGALVPSALEGR 96 (107)
T ss_dssp SSCEECTTTCTTSCEECTTTTC
T ss_pred CCCCHHHHCCCCCCEECCCCCC
T ss_conf 8710112115873110278896
No 7
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=71.59 Aligned_cols=53 Identities=25% Similarity=0.532 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCC----C-CCCCCCCCCCCCCC
Q ss_conf 99875721488878-999879905668300322526764----6-88850123420222
Q 001516 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK----E-STGPWYCELCEELL 755 (1062)
Q Consensus 703 e~~~~C~VC~~~E~-~~N~II~Cd~C~iaVHq~CYGi~~----i-p~g~WlCd~C~~~~ 755 (1062)
.++..|.||...+. ..+.||+|++|..+||+.||+.+. + |.+.|+|..|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 99899878899898999978789989969986438871234566999887997886935
No 8
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=67.66 Aligned_cols=54 Identities=24% Similarity=0.587 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 89899875721488878999879905668300322526--76468885012342022
Q 001516 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (1062)
Q Consensus 700 ~~ke~~~~C~VC~~~E~~~N~II~Cd~C~iaVHq~CYG--i~~ip~g~WlCd~C~~~ 754 (1062)
....++..|.||...+. .+.||.||+|...+|..|++ +..+|.+.|+|..|...
T Consensus 11 ~~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCC-CCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 13468898836899699-877888179984334534798846588987498047283
No 9
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=1.00 E-value=1 Score=66.14 Aligned_cols=54 Identities=26% Similarity=0.740 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 89899875721488878999879905668300322526--76468885012342022248
Q 001516 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLSS 757 (1062)
Q Consensus 700 ~~ke~~~~C~VC~~~E~~~N~II~Cd~C~iaVHq~CYG--i~~ip~g~WlCd~C~~~~~~ 757 (1062)
+...++..|.||.+ .+.||.||+|...+|..|++ +..+|.+.|+|..|......
T Consensus 3 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 3 MAQKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCCCCCCCCCC----CCCEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 57899899955799----997888189984206545688857687887099124081446
No 10
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=65.07 Aligned_cols=53 Identities=25% Similarity=0.710 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 78989987572148887899987990566830032252--6764688850123420222
Q 001516 699 DFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEELL 755 (1062)
Q Consensus 699 ~~~ke~~~~C~VC~~~E~~~N~II~Cd~C~iaVHq~CY--Gi~~ip~g~WlCd~C~~~~ 755 (1062)
.+..+++.+|.||.+ ++.||.||.|..++|..|+ ++..+|.+.|+|..|....
T Consensus 19 ~~~d~n~~~C~vC~~----~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 19 GTLDDSATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CSSSSSSSCCSSSCS----SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCCCCCCCCCCC----CCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 333889981837699----9977889999972416328989787869976772644877
Done!