Your job contains 1 sequence.
>001518
MLLSHYYHNPILLPKTLTNSSSPFFTFHKTLSLQNPEKPSIFVISCSKTQNPLTQSETRV
QNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVG
HTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKL
SGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTH
DSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDET
KTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPR
FTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFAL
GRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIV
FYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKST
MHSEQKERRSAEVAIRRTNIRLSRVLEKKAEAEKLLAELEEERPEQYEVDKEGITEEERY
MLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVE
SGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVL
ELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARG
ECGADLTSTESNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLN
MIADFFAEGVASGTSSCPDNSMCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGL
STPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHF
EKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESSPRGRQ
NSRAKPSIVRDVRPWPAVSRELLAAIKLECGLQGQQEQEAPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001518
(1062 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 1995 5.0e-247 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 979 1.6e-117 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 500 1.1e-89 2
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 732 1.3e-82 2
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 249 2.9e-19 1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 236 7.5e-17 1
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 223 1.6e-14 2
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 219 1.8e-14 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 139 8.5e-12 3
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 121 1.5e-08 2
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 121 1.4e-06 2
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 114 1.5e-06 2
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 1995 (707.3 bits), Expect = 5.0e-247, Sum P(2) = 5.0e-247
Identities = 421/770 (54%), Positives = 522/770 (67%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
SAIQRIA+KLRSLG VE+ T E ++ GEIF+PLP ++P +RVGHTID
Sbjct: 58 SAIQRIAEKLRSLGFVEEKHDSP-TRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116
Query: 126 SWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEX 185
SWSTP PVP PG+G AI RY++L K V W + +KE++VP+LAEL L E
Sbjct: 117 SWSTPSYPVPKPGSGTAISRYHEL-KRV----WKKETEMERKKEEKVPSLAELTLPPAEL 171
Query: 186 XXXXXXXXXXXXXXXXXXXXXTEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLER 245
TEGIVNGIHERWR EVVKI CED+ R+NMKRTHD LE
Sbjct: 172 RRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLET 231
Query: 246 KTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSS 305
KTGGLV+WRSGSKI+LYRG +Y+YPYF++D A+S + + D+G+ +++ S
Sbjct: 232 KTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASG--ASSM--DQGVVDSREKQS 287
Query: 306 GADSAKPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGPRFTDWW 365
A+S+ PS TNK V+ L VGSPDK+R+QLPGE +LVEEADRLL+GLGPRFTDWW
Sbjct: 288 IAESSAPS---ITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWW 344
Query: 366 GYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRN 425
YDP PVD DLLPA VP YRRPFRLLPYGV PKLT+DEMTT+RRLGRPLPCHFALGRNRN
Sbjct: 345 AYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRN 404
Query: 426 LQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGK 485
LQGLA AIVKLWEKCE+AKIAVKRG QNTNSE+MA+ELK LTGGTL+SRD++FIV YRGK
Sbjct: 405 LQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGK 464
Query: 486 DFLPPAASSAIEERRKHEFSTSNDSKEEPELG-NRHDNSGDNTQDEFGC-TNDQKSTMHS 543
DFLP A SSAIEERR+ N S +L N + +++ DQK + +
Sbjct: 465 DFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQT 524
Query: 544 EQ---KERRSAEVAIRRTNIRLSRVXXXXXXXXXXXXXXXXXR-PEQYEVDKEGITEEER 599
Q ++R S E + +T+++LS P+ ++DKEGIT +E+
Sbjct: 525 HQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEK 584
Query: 600 YMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEV 659
YMLRK+GL+MK FLL+GRRGVFDGT+ENMHLHWK+RELVKII + IEAA + A LE
Sbjct: 585 YMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEA 644
Query: 660 ESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHV 719
ESGGILVAVE V+KGYAII+YRGKNYERP CLRP+TLL+KREA+KRS+EAQRR+SLKLHV
Sbjct: 645 ESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHV 704
Query: 720 LELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDM--QPA---ECMRSDTSHEV 774
L+L+ NIE+L QLV+D N + ES +V+EE + +P E + S ++
Sbjct: 705 LKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDL 764
Query: 775 NVQARGECGADLTSTESNDTGDATIDGPPAIQQDKQ--TESLTHNGISIN 822
+V + GE + +S D Q+D+ S H G S++
Sbjct: 765 SVPSSGE---ENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEGNSLD 811
Score = 593 (213.8 bits), Expect = 8.9e-93, Sum P(2) = 8.9e-93
Identities = 136/291 (46%), Positives = 171/291 (58%)
Query: 1 MLLSHYYHNPILLPKTLTNSSSPFFTFHKTL-SLQNPEKPSIFVISCSKTQNPLTQSETR 59
MLL ++ P++L KT + P F TL S +N + + + CS T +
Sbjct: 1 MLLPLFHQQPLILAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIF-CSSASGRKTLPQ-- 57
Query: 60 VQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRV 119
SAIQRIA+KLRSLG VE+ T E ++ GEIF+PLP ++P +RV
Sbjct: 58 ------SAIQRIAEKLRSLGFVEEKHDSP-TRRITGEESGKNSPGEIFVPLPKQLPIHRV 110
Query: 120 GHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELK 179
GHTID SWSTP PVP PG+G AI RY++L K V W + +KE++VP+LAEL
Sbjct: 111 GHTIDTSWSTPSYPVPKPGSGTAISRYHEL-KRV----WKKETEMERKKEEKVPSLAELT 165
Query: 180 LSGKEXXXXXXXXXXXXXXXXXXXXXXTEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRT 239
L E TEGIVNGIHERWR EVVKI CED+ R+NMKRT
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 240 HDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADES----STDGASSDD 286
HD LE KTGGLV+WRSGSKI+LYRG +Y+YPYF++D + GASS D
Sbjct: 226 HDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMD 276
Score = 408 (148.7 bits), Expect = 5.0e-247, Sum P(2) = 5.0e-247
Identities = 88/141 (62%), Positives = 104/141 (73%)
Query: 911 NENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNV 970
+EN+ LSNR+RL+LRKQAL+MKKRP AVGRSN+VTG+A+ +K HF+K PLAIVNV
Sbjct: 866 SENDGLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNV 925
Query: 971 KGRAKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRGWGAEDESS---PRGRQNSRAK-P 1026
KGRA GTSVQEV+AKL+E TGA+LVSQEPSKVILYRGWGAE+E P S P
Sbjct: 926 KGRANGTSVQEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYPNNNVKSSINLP 985
Query: 1027 SIVRDVRPWPAVSRELLAAIK 1047
S V P VS L+ AI+
Sbjct: 986 STRSFVDDPPHVSPALIEAIR 1006
Score = 104 (41.7 bits), Expect = 9.9e-61, Sum P(2) = 9.9e-61
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 394 GVQPKLTNDEMTTLRRLGRPLPCH--FALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGA 451
G+ L+N E LR+ + FA+GR+ + GLA + ++K +A + VK A
Sbjct: 870 GLVTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRA 929
Query: 452 QNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
T+ + + +LK TG L+S++ ++ YRG
Sbjct: 930 NGTSVQEVIAKLKEETGALLVSQEPSKVILYRG 962
Score = 101 (40.6 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 933 LRMKKRPV---LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEA 989
+R RP+ A+GR+ + G+A AI +EK LA + VK + T+ + + +L+
Sbjct: 386 IRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWL 445
Query: 990 TGAVLVSQEPSKVILYRG 1007
TG L+S++ ++LYRG
Sbjct: 446 TGGTLISRDKDFIVLYRG 463
Score = 96 (38.9 bits), Expect = 6.9e-60, Sum P(2) = 6.9e-60
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 594 ITEEERYMLRKVGLRMKAF--LLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
++ ER +LRK L+MK +GR V G + +H++ L + K R ++
Sbjct: 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query: 652 QEA-RTLEVESGGILVAVERVNKGYAIILYRG 682
QE L+ E+G +LV+ E +K +ILYRG
Sbjct: 935 QEVIAKLKEETGALLVSQEP-SK---VILYRG 962
Score = 91 (37.1 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 979
++N ++ +LRK L+MK P L +GR + G + + H+ KY + + +
Sbjct: 579 ITNDEKYMLRKIGLKMK--PFLLLGRRGVFDGTIENMHLHW-KYRELVKIICNEYSIEAA 635
Query: 980 QEVVAKLEEATGAVLVSQEP-SK---VILYRG 1007
+V LE +G +LV+ E SK +I+YRG
Sbjct: 636 HKVAEILEAESGGILVAVEMVSKGYAIIVYRG 667
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 979 (349.7 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 236/539 (43%), Positives = 313/539 (58%)
Query: 229 EDLCRLNMKRTHDSLER--KTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286
E+L RL H+ L R KT +V R ++++R Y D
Sbjct: 284 EELVRLKF---HEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVY-----RGLDYKGPPV 335
Query: 287 LPNQLVDDEGLDETKTHSSGADSAKPSGQSPTNKKVQQTLIHSVGSP---DKLRYQLPGE 343
+ NQ+ G ET +G TN K Q+ + P + +R + E
Sbjct: 336 ISNQMA---GPKETLF----VPDVSSAGDEATNAKDNQSAPLVIKDPIIKNPIRKENMTE 388
Query: 344 AELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDE 403
E+ E + LLD LGPRF +WWG PVDADLLP T+PGY+ PFRLLP G++ LTN E
Sbjct: 389 EEV--EFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAE 446
Query: 404 MTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQEL 463
MT LR++G+ LPCHFALGRNRN QGLAAAI+++WEK IAKIAVKRG QNTN+++MA E+
Sbjct: 447 MTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEV 506
Query: 464 KRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNS 523
K LTGG LL R++ +IV YRGKDFLP + ++ + ER+ E + EE + NR +
Sbjct: 507 KTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQ--ELTKEIQDVEE-RVRNREIEA 563
Query: 524 ----GDNTQDEFGC---------------TNDQKSTMHSEQKERRSAEVAIRRTNIRLSR 564
GD E G T D + M E +A V ++R +L+
Sbjct: 564 VQPVGDKVPAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARV-VKRIQHKLNL 622
Query: 565 VXXXXXXXXXXXXXXXXXR-PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDG 623
P + D+E I+EEER M RKVGL+MKA+L +G RGVFDG
Sbjct: 623 AQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDG 682
Query: 624 TVENMHLHWKHRELVKIISKQRKIEAALQE-ARTLEVESGGILVAVERVNKGYAIILYRG 682
+ENMHLHWKHRELVK+ISKQ+ +A ++E AR LE ESGG+LVA+E+V KG+A+I YRG
Sbjct: 683 VIENMHLHWKHRELVKLISKQKN-QAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRG 741
Query: 683 KNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANS 741
KNY RP LRP+ LLTK +A+KRS+ QR ++L H+ EL R IE+++ QL + S
Sbjct: 742 KNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQLTSKNPSYS 800
Score = 199 (75.1 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 53/218 (24%), Positives = 107/218 (49%)
Query: 66 SAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDD 125
+AI+RI +LR+LG+ DD + E + N G++ P+ + R+G +
Sbjct: 132 NAIERIVLRLRNLGL-----GSDDEDDVEDDEGGGINGGDVK-PVTG---EERLGDLLKR 182
Query: 126 SWSTPENPVPVPGTGA-----AIVRYNQLNKEVGRQKWLAKN--SKMNEKEKEVPTLAEL 178
W P+ + G + ++ + + +E ++ + + + M ++ P+LAEL
Sbjct: 183 EWVRPDMML-AEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAEL 241
Query: 179 KLSGKEXXXXXXXXXXXXXXXXXXXXXXTEGIVNGIHERWRHAEVVKIVCEDLCRLNMKR 238
+ E T+ ++ I++ WR E+V++ ++ +MK
Sbjct: 242 TVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKT 301
Query: 239 THDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADE 276
H+ +ER+TGG+V+WR+GS +++YRG DYK P ++++
Sbjct: 302 AHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQ 339
Score = 82 (33.9 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 920 LSNRDRLLLRKQALRMKKRPV-LAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS 978
L+N + LRK K P A+GR+ G+A AI +EK +A + VK + T+
Sbjct: 442 LTNAEMTNLRKIG---KTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTN 498
Query: 979 VQEVVAKLEEATGAVLVSQEPSKVILYRG 1007
+ + +++ TG VL+ + +++YRG
Sbjct: 499 NKLMADEVKTLTGGVLLLRNKYYIVIYRG 527
Score = 81 (33.6 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS- 978
+S +R + RK L+MK L +G + GV + + H++ L V + + K +
Sbjct: 653 ISEEERAMFRKVGLKMKA--YLPIGIRGVFDGVIENMHLHWKHREL--VKLISKQKNQAF 708
Query: 979 VQEVVAKLEEATGAVLVSQE--PS--KVILYRG 1007
V+E LE +G VLV+ E P +I YRG
Sbjct: 709 VEETARLLEYESGGVLVAIEKVPKGFALIYYRG 741
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 503 EFSTSNDSKEEPELGNRHDNSGD--NTQDEFGCTNDQKSTMHS 543
E +D EE E + DN D T E ++ +++ M S
Sbjct: 805 ENDEDDDDDEEEEKDDVEDNESDWDETDGESAISSIEEADMSS 847
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 500 (181.1 bits), Expect = 1.1e-89, Sum P(2) = 1.1e-89
Identities = 97/172 (56%), Positives = 124/172 (72%)
Query: 345 ELVEEADRLLDGLGPRFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEM 404
E +E D LLD LGPRF DW G +P PVDADLLP +P Y PFR+LPYGV+ L E
Sbjct: 369 EYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEA 428
Query: 405 TTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELK 464
T LRRL R +P HFALGR+R LQGLA A+V+LWEK +AKIA+KRG Q+T SE MA++LK
Sbjct: 429 TALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLK 488
Query: 465 RLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPEL 516
+LTGG +LSR+++F+VFYRGK+FL + A+ E+ + T D +E+ L
Sbjct: 489 KLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERF-VRTLQDEEEQARL 539
Score = 476 (172.6 bits), Expect = 1.1e-89, Sum P(2) = 1.1e-89
Identities = 98/220 (44%), Positives = 140/220 (63%)
Query: 583 RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIIS 642
+P + D E IT+EER+M RK+GL+MKAFLL+GRRGVFDGTVENMHLHWK+RELVKII
Sbjct: 627 KPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIV 686
Query: 643 KQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREA 702
K + + + A LE ESGGILV++++V KGYAII+YRG++Y+RP LRPK LLTKR+A
Sbjct: 687 KAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKA 746
Query: 703 MKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQP 762
+ RS+E QRR+ L H+ + ++L+ ++ + ++ + DE + +
Sbjct: 747 LARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVT--DKGDEELYNKLDMAYASSDE 804
Query: 763 AECMRSDTSHEVNVQARGECG--ADLTSTESNDTGDATID 800
D A GE G ++ + E ++T D +D
Sbjct: 805 ETDEEDDDDAFPETYAEGEDGEEGEILAGELSETEDKDLD 844
Score = 253 (94.1 bits), Expect = 1.9e-63, Sum P(2) = 1.9e-63
Identities = 104/379 (27%), Positives = 163/379 (43%)
Query: 34 QNPEKPSIFVISCSKT-----QNPLTQSETRVQNDTTSAIQRIADKLRSLGIVEQTTSKD 88
+N KP V++ K ++ + R ++ S +++I +KL+ G +E+ +K+
Sbjct: 80 RNQPKPPKVVVNYRKEGRFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKE 139
Query: 89 DTLNPEPETRATDNAGE-IFIPLPHRIPKYRVGHTIDDSWSTPENPVPVPG-TGAAIVRY 146
E E R + E IF ++P R G T ++S EN + G G +
Sbjct: 140 I----EQERRIEKGSVEDIFYVEEGKLPNTRGGFT-EESLLGGENVIGSNGDVGFPWEKM 194
Query: 147 NQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGKEXXXXXXXXXXXXXXXXXXXXXX 206
+ K+ +W AK KE +LAE+ L E
Sbjct: 195 SAKEKKELEAEWTAK------KENRY-SLAEMTLPESELRRLRNLTFRTASKMRIRGGGV 247
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
T+ V+ I E+W+ AE+V++ E LNM++ H+ LE+KTGGLV+WRSG+ I LYRG
Sbjct: 248 TQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVS 307
Query: 267 YKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHSSGADSAK--PSGQSPTN--KKV 322
Y+ P + ++ P + V E DET T +D P + T +K
Sbjct: 308 YELP-----SGKWNKQRREETPPEAVI-ENHDETTTMVDKSDEKVHLPQLEQETTSVEKK 361
Query: 323 QQT--LIHSVGSPDKLRYQL-------PGEAELVEEADRLLDGLGPRFTDWWGYDPQPVD 373
QT ++ D+L L PG+ L +AD LL G P + + P V
Sbjct: 362 DQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDAD-LLPGAIPDYEPPFRVLPYGVR 420
Query: 374 ADLLPATVPGYRRPFRLLP 392
+ L P RR R +P
Sbjct: 421 SSLGPKEATALRRLARSIP 439
Score = 100 (40.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 979
L ++ LR+ A + P A+GRS + G+A A+ +EK LA + +K + T+
Sbjct: 423 LGPKEATALRRLARSIP--PHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTS 480
Query: 980 QEVVAKLEEATGAVLVSQEPSKVILYRG 1007
+ + L++ TG +++S+ ++ YRG
Sbjct: 481 ERMAEDLKKLTGGIMLSRNKDFLVFYRG 508
Score = 93 (37.8 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 979
+++ +R + RK L+MK L +GR + G + + H++ L + VK + V
Sbjct: 638 ITDEERFMFRKLGLKMKA--FLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFD-GV 694
Query: 980 QEVVAKLEEATGAVLVS-QEPSK---VILYRG 1007
++V LE +G +LVS + +K +I+YRG
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRG 726
Score = 87 (35.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 40/174 (22%), Positives = 77/174 (44%)
Query: 583 RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIIS 642
+ +Y + + + E E LR + R + + + GV V+ + WK E+V++
Sbjct: 210 KENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKI 269
Query: 643 KQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREA 702
+ + LE ++GG+++ G +I LYRG +YE P+ K +RE
Sbjct: 270 EGASALNMRKMHEILEKKTGGLVIW----RSGTSISLYRGVSYELPS---GKWNKQRREE 322
Query: 703 MKRSLEAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEE 756
+ V ++ EK+ L + ++E S+E D++ P+V+ E
Sbjct: 323 TPPEAVIENHDETTTMV---DKSDEKVHLPQL-EQETTSVEKKDQTS-PVVEYE 371
Score = 86 (35.3 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 591 KEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAA 650
+ + +E LR++ + +GR G M W+ L KI K R +++
Sbjct: 420 RSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIK-RGVQST 478
Query: 651 LQE--ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
E A L+ +GGI+++ R NK + ++ YRGKN+ L ++E R+L+
Sbjct: 479 TSERMAEDLKKLTGGIMLS--R-NKDF-LVFYRGKNF---LSREVADALVEQERFVRTLQ 531
Query: 709 AQRRQS 714
+ Q+
Sbjct: 532 DEEEQA 537
Score = 85 (35.0 bits), Expect = 9.1e-46, Sum P(2) = 9.1e-46
Identities = 32/125 (25%), Positives = 58/125 (46%)
Query: 432 AIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDFLPPA 491
AI + W+ EI ++ ++ GA N M + L++ TGG ++ R I YRG + P
Sbjct: 254 AIKEKWKSAEIVRLKIE-GASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELP- 311
Query: 492 ASSAIEERRKHEFSTSNDSKEEPELGNRHDNSG---DNTQDEFGCTNDQKSTMHSEQKER 548
S ++R+ E + E + N HD + D + ++ ++ T E+K++
Sbjct: 312 -SGKWNKQRREE------TPPEAVIEN-HDETTTMVDKSDEKVHLPQLEQETTSVEKKDQ 363
Query: 549 RSAEV 553
S V
Sbjct: 364 TSPVV 368
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 732 (262.7 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 166/400 (41%), Positives = 233/400 (58%)
Query: 311 KPSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAE----LVE-EADRLLDGLGPRFTDWW 365
K G +KK + L+ G P Y G+ E L E EADRLLDGLGPR+ DWW
Sbjct: 273 KTGGLVVLSKK--EFLVVYRGGPS---YSSEGQDEISSSLYEREADRLLDGLGPRYMDWW 327
Query: 366 GYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRN 425
P PVDADLLP V GY P R P + KLT++E+T LR + +PLP HF LGRN
Sbjct: 328 MRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYG 387
Query: 426 LQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGK 485
LQGLA+AIVKLWEKC IAKIA+K GA NTN+E MA EL+ LTGG L+ R++ IV YRGK
Sbjct: 388 LQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGK 447
Query: 486 DFLPPAASSAIEERRK--HEFSTSNDSKEEPEL--------GNR-HDNSGDNTQDEFGCT 534
DFL + +E+R + + ++K E ++ G + + + T EF
Sbjct: 448 DFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQEL 507
Query: 535 NDQKSTMHSE----QKERRSAEVAIRRTNIRLSRVXXXXXXXXXXXXXXXXX-RPEQYEV 589
+ M + E+ E ++ +LS + +P + +
Sbjct: 508 QRKFGEMDPRNLETEAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDD 567
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EER LR++GL+M + L++GRRGVF G +E +H HWKHRE+ K+I+ Q+
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPA 689
+ A+ LE ES G+L+++E++ +G+AI++YRGKNY+RP+
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPS 667
Score = 373 (136.4 bits), Expect = 7.0e-38, Sum P(2) = 7.0e-38
Identities = 71/153 (46%), Positives = 108/153 (70%)
Query: 583 RPEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIIS 642
+P + + D E +T EER LR++GL+M + L++GRRGVF G +E +H HWKHRE+ K+I+
Sbjct: 561 KPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVIT 620
Query: 643 KQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC-LRPKTLLTKRE 701
Q+ + A+ LE ES G+L+++E++ +G+AI++YRGKNY+RP+ L + LLTKR+
Sbjct: 621 MQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRK 680
Query: 702 AMKRSLEAQRRQSLKLHVLELTRNIEKLKLQLV 734
A++RS+ QR SLK + R IE LK+ LV
Sbjct: 681 ALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLV 713
Score = 115 (45.5 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 34/115 (29%), Positives = 50/115 (43%)
Query: 154 GRQKWLAKNSKM---NEKEKEVPTLAELKLSGKEXXXXXXXXXXXXXXXXXXXXXXTEGI 210
G+ W + + K++ VPT AEL L TE +
Sbjct: 178 GKMPWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELV 237
Query: 211 VNGIHERWRHAEVVKIVCE-DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRG 264
VN I W+ E+ + + LCR NM+R + +E KTGGLVV +++YRG
Sbjct: 238 VNKIKSMWKLNELAMVRFDVPLCR-NMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
Score = 99 (39.9 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 914 NSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGR 973
N+RA +L++ + LR A + VL GR+ + G+A AI +EK +A + +K
Sbjct: 356 NTRA-KLTDEELTYLRNIAQPLPFHFVL--GRNYGLQGLASAIVKLWEKCIIAKIAIKWG 412
Query: 974 AKGTSVQEVVAKLEEATGAVLVSQEPSKVILYRG 1007
A T+ +E+ +L TG VL+ + ++LYRG
Sbjct: 413 ALNTNNEEMADELRYLTGGVLILRNKYLIVLYRG 446
Score = 98 (39.6 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 29/100 (29%), Positives = 51/100 (51%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
LTN+E LRR+G + LGR G+ + + W+ E+AK+ Q S +
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITM---QKLFSRV 628
Query: 459 M--AQELKRLTGGTLLS----RDREFIVFYRGKDFLPPAA 492
+ A+ L+ + G L+S ++ I+ YRGK++ P++
Sbjct: 629 VYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSS 668
Score = 85 (35.0 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 208 EGIVNGIHERWRHAEVVKIVCE-DLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
+G+ + I + W + KI + N + D L TGG+++ R+ I+LYRG D
Sbjct: 389 QGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKD 448
Query: 267 YKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTHS 304
FL+DE + +D L + +ETK S
Sbjct: 449 -----FLSDEVAD---LVEDRERLLSRYQHFEETKRES 478
Score = 85 (35.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 33/110 (30%), Positives = 50/110 (45%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 979
L+N +R LR+ L+M VL GR + GV + + H++ +A V + V
Sbjct: 572 LTNEERECLRRIGLKMNSSLVL--GRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVV 629
Query: 980 QEVVAKLEEATGAVLVSQEPSK----VILYRGWGAEDESSPRGRQNSRAK 1025
A LE + VL+S E K +++YRG + SS QN K
Sbjct: 630 YTAKA-LETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTK 678
Score = 59 (25.8 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 433 IVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRG 484
I +W+ E+A + N E + ++ TGG ++ +EF+V YRG
Sbjct: 241 IKSMWKLNELAMVRFDVPLCR-NMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 249 (92.7 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 59/140 (42%), Positives = 83/140 (59%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +TEEE++ L++ G + K F+L+GRRGVF G V N+HLHWK E VK+I K
Sbjct: 178 DPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPG 237
Query: 650 ALQE-ARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLE 708
+ E A L S GI++ V+ N I+LYRGKNY RP + P L+K +A+++
Sbjct: 238 QVHEYAEELARLSKGIVIDVKPNN---TIVLYRGKNYVRPEVMSPVDTLSKDKALEKY-- 292
Query: 709 AQRRQSLKLHVLELTRNIEK 728
+ QSL+ H E +EK
Sbjct: 293 -RYEQSLE-HTSEFIEKLEK 310
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 236 (88.1 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 83/318 (26%), Positives = 142/318 (44%)
Query: 479 IVFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQK 538
+V GK P + ++ +K+++ T K + + R + + N +D ++
Sbjct: 62 LVISEGK---PKFETRELDPPKKYKWLTKKRLKLKRKK-EREERNAANRKDP------RR 111
Query: 539 STMHSEQKERRSAEVAIRRTNIRLSRVXXXXXXXXXXXXXXXXXRPEQYEVDKEGITEEE 598
T+ ++K+ +AE R +L + + + EV IT EE
Sbjct: 112 LTVKGKKKKFVNAE---ERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEE 168
Query: 599 RYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLE 658
R+ L+K+G + ++ +GRRGVF G + NMHLHWK E VK+I K Q A L
Sbjct: 169 RFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELA 228
Query: 659 VESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLH 718
SGG+ V + + II YRGK Y +P + P L+K+ A ++S Q +S++
Sbjct: 229 KLSGGVPVNI--IGDD-TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHF 285
Query: 719 VLELTRNIEKL--KLQLVKD-KEANSLETIDESILPLVKEEIGDMQP-AECMRSDTSHEV 774
+ + +E + L D N L +D+S P + + + C +D+S E
Sbjct: 286 IAIAEKELELYYRHVALYDDPNNRNPLSILDDS--PSESRQHHENEFFLSCSDTDSSSED 343
Query: 775 NVQARGECGADLTSTESN 792
+ C D S+ S+
Sbjct: 344 EDEDEELCELDNGSSSSS 361
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 223 (83.6 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 56/222 (25%), Positives = 119/222 (53%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E +T EE + K+GL+ K ++ +GRRG++ G + NMHLHWK + ++++ K +
Sbjct: 173 DPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 232
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPAC--LRPKTLLTKREAMKRSL 707
+ A L +GGI++ V ++G II+YRGKNY +P + P+ L +++A+ +S
Sbjct: 233 VKEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSK 289
Query: 708 EAQRRQSLKLHVLELTRNIEKLKLQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMR 767
++++ ++ L + ++ L+ Q ++ +++ D ++I + + EC+
Sbjct: 290 CRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIE-RSEECLE 348
Query: 768 SDTSH-EVNVQARGECG-ADLTSTESNDTGDATIDGPPAIQQ 807
+ E ++ + +D+ T+S + DA + P +++
Sbjct: 349 DEQEEDEAGLELATDSDLSDIFETDS-ELEDAKTERPLFLEE 389
Score = 41 (19.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 24/93 (25%), Positives = 34/93 (36%)
Query: 91 LNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLN 150
L+ E TR N + H P G DD S EN G ++ +L
Sbjct: 56 LHKESLTRPMWNVSFLRSSSFHSTPARETG---DDDISKSENSSSQDGDSCTKLKRKKLK 112
Query: 151 KEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183
+ +WL +KE E T +E K+ K
Sbjct: 113 GKRAVVRWLKFFRWKKKKEFERMT-SEEKILNK 144
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 219 (82.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 46/140 (32%), Positives = 79/140 (56%)
Query: 590 DKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEA 649
D E T E+ +K+G + K ++ +G RGVF G V+NMH+HWK E V++ E
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 650 ALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEA 709
+ A + SGG+++ + V II++RG+NY +P L P LTKR+A+ ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 710 QRRQSLKLHVLELTRNIEKL 729
Q +S KL++ + + + ++
Sbjct: 205 QALESQKLNIKKTEQQLRRM 224
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 139 (54.0 bits), Expect = 8.5e-12, Sum P(3) = 8.5e-12
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
T ++N IH+ W+ V KI C+ +C ++M + LE K GG V++R G + L+RG +
Sbjct: 270 THNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRN 329
Query: 267 YKY 269
Y +
Sbjct: 330 YNH 332
Score = 109 (43.4 bits), Expect = 8.5e-12, Sum P(3) = 8.5e-12
Identities = 43/162 (26%), Positives = 71/162 (43%)
Query: 382 PGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCE 441
P Y R + +P G LT E T +RR GR L LG+N L + + +E CE
Sbjct: 348 PVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 442 IAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKDF-----LPPAASSAI 496
+ +I + G + ++ + +LK L L+S + E I+ +RG+++ P +
Sbjct: 404 LVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDIL 462
Query: 497 EERRKHEFSTSNDSKEEPELG-NRHDNSGDNTQ-DEFGCTND 536
E+ E T+ +EP + N+ N D ND
Sbjct: 463 EDI---EVDTALPEDDEPSVSPNQSQTMTQNPPLDSMELQND 501
Score = 105 (42.0 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 24/86 (27%), Positives = 50/86 (58%)
Query: 927 LLRKQALRMKKR-----PVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQE 981
L R++A M+++ P+ +G++ + + K +K FE L ++ +G KG+ ++
Sbjct: 361 LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGM-KGSDFRK 419
Query: 982 VVAKLEEATGAVLVSQEPSKVILYRG 1007
+ AKL++ VLVS E +++++RG
Sbjct: 420 IGAKLKDLVPCVLVSFENEQILIWRG 445
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 32/107 (29%), Positives = 48/107 (44%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
E+ E +T+EE L L+ L MGR G+ + N+H WK R + KI K
Sbjct: 237 EILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCT 296
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPK 694
LE + GG ++ +G + L+RG+NY RP+
Sbjct: 297 VDMDNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNYNHRT--RPR 337
Score = 73 (30.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 38/162 (23%), Positives = 76/162 (46%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
EG+T +E +R+ G + +G+ GV+ V+N+ ++ ELV+I + K
Sbjct: 359 EGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFR 418
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKT--LLTKREAMKRSLEA 709
+ L+ +LV+ E N+ I+++RG+ ++ K +L E + +L
Sbjct: 419 KIGAKLKDLVPCVLVSFE--NE--QILIWRGREWKSSLTTPDKKGDILEDIE-VDTALPE 473
Query: 710 QRRQSLKLHVLE-LTRN--IEKLKLQLVKDKEANSLETIDES 748
S+ + + +T+N ++ ++LQ D S T+D S
Sbjct: 474 DDEPSVSPNQSQTMTQNPPLDSMELQNDPDGHDLSPSTVDSS 515
Score = 67 (28.6 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 420 LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479
+GR+ + I LW++ + KI K G + + + ++L+ GG ++ R +
Sbjct: 264 MGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGKVIYRRGGVL 322
Query: 480 VFYRGKDF 487
+RG+++
Sbjct: 323 FLFRGRNY 330
Score = 47 (21.6 bits), Expect = 8.5e-12, Sum P(3) = 8.5e-12
Identities = 29/119 (24%), Positives = 43/119 (36%)
Query: 21 SSPFFTFHKTL-SLQNPEKPSIFVISCSKTQNPLTQSETRVQNDTTSAIQRIADKLRSLG 79
++PF F +L NP PS S N + R + A R D+
Sbjct: 6 NTPFPIFAPSLFPNHNPRAPSEIRFSRWGNANAERFEQRRRSQEELEAEIR-RDRRFDAA 64
Query: 80 IVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTIDDSW-STPENPVPVP 137
T + EP+T + G +P IP R ++ DS + P+N VP
Sbjct: 65 TKIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKPDSGPNRPKNKPRVP 123
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 121 (47.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
T ++N ++ W+HAE V++ C + L+MK LE KT G VV + ++LYRG +
Sbjct: 188 THNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRN 247
Query: 267 Y 267
Y
Sbjct: 248 Y 248
Score = 91 (37.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 399 LTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEM 458
L+ DE +R+ G +P L +N L + + E+ +I G + + +
Sbjct: 279 LSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCL-GLERKDYKK 337
Query: 459 MAQELKRLTGGTLLSRDREFIVFYRGKDFLPPAASSAIEERRKHEFSTSND 509
+ +L+ L L++ D+E +V +RGKD+ PP E S +D
Sbjct: 338 IGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYSSFIHRESSIDSD 388
Score = 66 (28.3 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 25/107 (23%), Positives = 52/107 (48%)
Query: 584 PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKI--I 641
P + +G++ +E +RK GL + A + + G + V + + ELV+I +
Sbjct: 269 PRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCL 328
Query: 642 SKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERP 688
+RK + A+ ++ ILV ++ ++++RGK+Y+ P
Sbjct: 329 GLERKDYKKIG-AKLRDLVPC-ILVTFDKEQ----VVIWRGKDYKPP 369
Score = 48 (22.0 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/88 (20%), Positives = 41/88 (46%)
Query: 920 LSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSV 979
LS + +RK+ L + LA ++ + ++ F L ++ G +
Sbjct: 279 LSIDETKAMRKKGLAVPALTKLA--KNGYYGSLVPMVRDAFLVSELVRIDCLGLER-KDY 335
Query: 980 QEVVAKLEEATGAVLVSQEPSKVILYRG 1007
+++ AKL + +LV+ + +V+++RG
Sbjct: 336 KKIGAKLRDLVPCILVTFDKEQVVIWRG 363
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 121 (47.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
T +++ IH W+ AE V+I C + L+M LE K+GG +V+R+ + ++LYRG +
Sbjct: 172 THNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRN 231
Query: 267 Y 267
Y
Sbjct: 232 Y 232
Score = 70 (29.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 592 EGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAAL 651
+G+ EE +R GL A + + R GV+ V + ++ E+V++ +
Sbjct: 261 DGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCTH----VGM 316
Query: 652 QEARTLEVESGGILVAVERVNKGYAIILYRGK 683
+ + + V+ ++ V + K IIL+RGK
Sbjct: 317 SDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
Score = 46 (21.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 940 VLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTS-VQEVVAKLEEATGAVLVSQE 998
++ + R+ + V ++ FE IV + G S + + KL+E V + +
Sbjct: 281 LMKLTRNGVYVNVVGRVREEFETEE--IVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFK 338
Query: 999 PSKVILYRG 1007
++IL+RG
Sbjct: 339 DEQIILWRG 347
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 114 (45.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 207 TEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGAD 266
T ++ IH W+ V K+ C+ + ++M LE KTGG ++ R G + L+RG +
Sbjct: 230 THNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRN 289
Query: 267 YKY 269
Y Y
Sbjct: 290 YNY 292
Score = 104 (41.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 31/98 (31%), Positives = 47/98 (47%)
Query: 588 EVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKI 647
EV E + E+ ML K + + +GR G +E +H HWK R + K+ K
Sbjct: 197 EVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPT 256
Query: 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNY 685
R LE ++GG ++ RV G + L+RG+NY
Sbjct: 257 VDMNNVCRVLEEKTGGEII--HRV--GGVVYLFRGRNY 290
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 38/146 (26%), Positives = 62/146 (42%)
Query: 378 PATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFALGRNRNLQGLAAAIVKLW 437
PA P Y + + +P G LT +E R G+ L L +N L + +
Sbjct: 305 PAA-PVYPKLIQEVPEG----LTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAF 359
Query: 438 EKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFIVFYRGKD----FLP-PAA 492
E + K+ G + ++ + + +LK L LLS D E I+ +RG++ F+ P
Sbjct: 360 ELSSLVKVDCP-GLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLI 418
Query: 493 SSAIEERRKHEFSTSNDSKEEPELGN 518
S E +E S+ EE + N
Sbjct: 419 PSLSETNTTNELDPSDKPSEEQTVAN 444
Score = 81 (33.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 19/81 (23%), Positives = 43/81 (53%)
Query: 938 RPVLAVGRSNIVTGVAKAIKAHFEKYPLAIVNVKGRAKGTSVQEVVAKLEEATGAVLVSQ 997
RP+ + ++ + + K ++ FE L V+ G + + +++ AKL+E VL+S
Sbjct: 337 RPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPG-LEPSDYKKIGAKLKELVPCVLLSF 395
Query: 998 EPSKVILYRG--WGAEDESSP 1016
+ +++++RG W + +P
Sbjct: 396 DDEQILMWRGREWKSRFVDNP 416
Score = 63 (27.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 584 PEQYEVDKEGITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKII-- 641
P+ + EG+T+EE + R G ++ + + GV+ V+++ ++ LVK+
Sbjct: 311 PKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCP 370
Query: 642 ----SKQRKIEAALQE 653
S +KI A L+E
Sbjct: 371 GLEPSDYKKIGAKLKE 386
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1062 983 0.00098 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 630 (67 KB)
Total size of DFA: 446 KB (2212 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 94.74u 0.11s 94.85t Elapsed: 00:00:04
Total cpu time: 94.75u 0.11s 94.86t Elapsed: 00:00:04
Start: Mon May 20 21:51:52 2013 End: Mon May 20 21:51:56 2013