Query 001518
Match_columns 1062
No_of_seqs 323 out of 1091
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 15:51:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001518.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_821-825//hhsearch_pdb/001518hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 1.0 1 1 186.4 12.8 88 593-684 1-88 (104)
2 1jo0_A Hypothetical protein HI 1.0 1 1 182.1 13.0 87 179-265 2-88 (98)
3 1jo0_A Hypothetical protein HI 1.0 1 1 181.5 12.6 96 593-694 2-97 (98)
4 1rq8_A Conserved hypothetical 1.0 1 1 181.3 13.5 89 179-267 1-89 (104)
5 3ka5_A Ribosome-associated pro 1.0 1 1 18.5 6.3 49 222-270 1-52 (65)
6 3lyv_A Ribosome-associated fac 1.0 1 1 18.1 3.2 49 222-270 2-53 (66)
7 3k2t_A LMO2511 protein; lister 1.0 1 1 17.8 3.6 48 222-269 1-51 (57)
8 2zkr_v 60S ribosomal protein L 1.0 1 1 15.2 0.0 56 648-712 49-110 (123)
9 3r2g_A Inosine 5'-monophosphat 1.0 1 1 14.8 -1.0 20 466-485 236-256 (361)
10 2e6x_A TT1592, hypothetical pr 1.0 1 1 14.6 1.6 17 241-257 3-19 (69)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=186.35 Aligned_cols=88 Identities=23% Similarity=0.398 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999612477746870567888779999999986055287992589989999999999989299899732216
Q 001518 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (1062)
Q Consensus 593 ~LT~eERk~LRklGlklkpvV~IGKrGVtdgVIe~Ih~alk~rELVKI~v~~~~~edvkeiA~~Le~~SGgiLVqv~kv~ 672 (1062)
|||++||+|||++||+++|+|+||++|||++|+.+|++||++||||||+|.+++.++++++|..|++.+||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_conf 9798999999997468998699778879999999999999978947999807987789999999999869999999----
Q ss_pred CCCEEEEECCCC
Q ss_conf 573999971689
Q 001518 673 KGYAIILYRGKN 684 (1062)
Q Consensus 673 IG~tIILYRgKN 684 (1062)
||+++||||+++
T Consensus 77 IG~~~VLYR~~~ 88 (104)
T 1rq8_A 77 IGSMIVIYRESK 88 (104)
T ss_dssp ETTEEEEEECCC
T ss_pred ECCEEEEEECCC
T ss_conf 999999995788
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=182.07 Aligned_cols=87 Identities=26% Similarity=0.381 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 69999999999600399881883799998999999999998388388997277415499999999998599799998839
Q 001518 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (1062)
Q Consensus 179 tLt~kElr~LRklA~~Lkp~V~IGK~GLTe~VVeeIh~~Wkk~ELVKIKi~g~~~~dmk~iaeeLE~kTGG~VV~riG~t 258 (1062)
.||++|+++||++||+++|+|+|||+|+|++|+++|+++|++||||||+|.+++..++++++++|+++|||.+||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 89989999999975479986997787799999999999999779279998179877899999999999699999999999
Q ss_pred EEEEECC
Q ss_conf 9998248
Q 001518 259 IILYRGA 265 (1062)
Q Consensus 259 iVLYRGk 265 (1062)
+||||++
T Consensus 82 ~vLyR~~ 88 (98)
T 1jo0_A 82 LVLYRPS 88 (98)
T ss_dssp EEEECCC
T ss_pred EEEECCC
T ss_conf 9998069
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=181.54 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999612477746870567888779999999986055287992589989999999999989299899732216
Q 001518 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (1062)
Q Consensus 593 ~LT~eERk~LRklGlklkpvV~IGKrGVtdgVIe~Ih~alk~rELVKI~v~~~~~edvkeiA~~Le~~SGgiLVqv~kv~ 672 (1062)
.||++||+|||++||+++|+|+||++|||++|+.+|++||++||||||+|.+++++++++++..|++.+||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_conf 8998999999997547998699778779999999999999977927999817987789999999999969999999----
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 5739999716899999767876
Q 001518 673 KGYAIILYRGKNYERPACLRPK 694 (1062)
Q Consensus 673 IG~tIILYRgKNY~rP~~l~P~ 694 (1062)
||+++||||++.. |....|.
T Consensus 78 IG~~~vLyR~~~~--~~i~lp~ 97 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLPR 97 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCCC
T ss_pred ECCEEEEECCCCC--CCCCCCC
T ss_conf 9999999806998--7767989
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=181.31 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 69999999999600399881883799998999999999998388388997277415499999999998599799998839
Q 001518 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (1062)
Q Consensus 179 tLt~kElr~LRklA~~Lkp~V~IGK~GLTe~VVeeIh~~Wkk~ELVKIKi~g~~~~dmk~iaeeLE~kTGG~VV~riG~t 258 (1062)
+||++|+++||++||+|+|+|+|||+|+|++|+++|+++|++||||||+|.+++..++++++++|+++|||.+||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 97989999999974689986997788799999999999999789479998079877899999999998699999999999
Q ss_pred EEEEECCCC
Q ss_conf 999824899
Q 001518 259 IILYRGADY 267 (1062)
Q Consensus 259 iVLYRGknY 267 (1062)
+||||++..
T Consensus 81 ~VLYR~~~~ 89 (104)
T 1rq8_A 81 IVIYRESKE 89 (104)
T ss_dssp EEEEECCCS
T ss_pred EEEEECCCC
T ss_conf 999957887
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=1.00 E-value=1 Score=18.49 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=41.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 8388997277415499999999998599799998---839999824899898
Q 001518 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKYP 270 (1062)
Q Consensus 222 ELVKIKi~g~~~~dmk~iaeeLE~kTGG~VV~ri---G~tiVLYRGknY~~P 270 (1062)
++|+.|-....+++.+++..+++-.-.--+|.+. |.+-|+||.++.++-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 9599986057989999999998707993999981789979899996899799
No 6
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=1.00 E-value=1 Score=18.06 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=39.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 8388997277415499999999998599799998---839999824899898
Q 001518 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKYP 270 (1062)
Q Consensus 222 ELVKIKi~g~~~~dmk~iaeeLE~kTGG~VV~ri---G~tiVLYRGknY~~P 270 (1062)
++|+.|-....+++.+++..+++-.-.--+|.+. |..-|+||.++.++-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 1799987057989999999998707993999981789989899997899799
No 7
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=1.00 E-value=1 Score=17.78 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=36.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCC
Q ss_conf 8388997277415499999999998599799998---83999982489989
Q 001518 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (1062)
Q Consensus 222 ELVKIKi~g~~~~dmk~iaeeLE~kTGG~VV~ri---G~tiVLYRGknY~~ 269 (1062)
++|+.|-.....++.+++..+++..-.--+|.+. |..-|+||.++.++
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCE
T ss_conf 938998626798999999999872799599998078898989999679979
No 8
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=1.00 E-value=1 Score=15.18 Aligned_cols=56 Identities=32% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC------CCHHHHHHHHHHHHHH
Q ss_conf 9999999999989299899732216573999971689999976787632------5589999975999997
Q 001518 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTL------LTKREAMKRSLEAQRR 712 (1062)
Q Consensus 648 edvkeiA~~Le~~SGgiLVqv~kv~IG~tIILYRgKNY~rP~~l~P~nl------LtKrkAL~rs~e~qr~ 712 (1062)
.-+++||..+.....-..- ..--+|.|+.|. |..++|+-+ |||.++-.+..-.|++
T Consensus 49 ~vRrdIARI~Tvl~er~~~--------~lr~~yk~kk~~-p~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k 110 (123)
T 2zkr_v 49 VVRKSIARVLTVINQTQKE--------NLRKFYKGKKYK-PLDLRPKKTRAMRRRLNKHEENLKTKKQQRK 110 (123)
T ss_dssp HHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHCCHHHHHH
T ss_conf 9999999999999999999--------999998389878-7543437789999872878770513999999
No 9
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=14.83 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=9.6
Q ss_pred HHCCEEEEE-ECCEEEEECCC
Q ss_conf 309889976-48889998179
Q 001518 466 LTGGTLLSR-DREFIVFYRGK 485 (1062)
Q Consensus 466 lTGGvLVsr-~k~~IIlYRGK 485 (1062)
+++|-.+.. ++...-.|||-
T Consensus 236 Espg~~~~~~~g~~~k~y~Gm 256 (361)
T 3r2g_A 236 PTPGEVFQKDDGSKVKRYRGM 256 (361)
T ss_dssp TSSSCEEECTTSCEEEEESCC
T ss_pred CCCCEEEEECCCEEEEEEECC
T ss_conf 678605772289387787547
No 10
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=14.61 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=13.9
Q ss_pred HHHHHHHCCEEEEEECC
Q ss_conf 99999859979999883
Q 001518 241 DSLERKTGGLVVWRSGS 257 (1062)
Q Consensus 241 eeLE~kTGG~VV~riG~ 257 (1062)
..+-++.|+.+|||||+
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHCEEEEEECC
T ss_conf 78999974102786435
Done!