Query 001520
Match_columns 1061
No_of_seqs 253 out of 391
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 02:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2116 Protein involved in pl 100.0 5E-133 1E-137 1124.0 36.2 297 744-1053 434-737 (738)
2 COG5083 SMP2 Uncharacterized p 100.0 1.7E-93 3.6E-98 779.1 28.8 243 801-1049 327-575 (580)
3 PF08235 LNS2: LNS2 (Lipin/Ned 100.0 1.9E-58 4.1E-63 454.7 13.8 157 854-1010 1-157 (157)
4 smart00775 LNS2 LNS2 domain. T 100.0 8.7E-43 1.9E-47 339.2 14.9 156 854-1009 1-156 (157)
5 PF04571 Lipin_N: lipin, N-ter 100.0 3.8E-38 8.3E-43 295.5 8.2 92 1-95 1-93 (110)
6 COG4850 Uncharacterized conser 99.2 3.8E-11 8.2E-16 131.1 12.0 171 816-1000 127-307 (373)
7 PHA02530 pseT polynucleotide k 98.9 3.2E-09 7E-14 110.8 7.3 177 808-995 109-292 (300)
8 PF09949 DUF2183: Uncharacteri 98.8 1.6E-08 3.4E-13 94.9 8.7 94 898-1001 1-95 (100)
9 cd01427 HAD_like Haloacid deha 98.7 1.2E-07 2.6E-12 83.4 9.5 128 854-994 1-135 (139)
10 TIGR01675 plant-AP plant acid 98.6 3.8E-07 8.2E-12 96.4 11.7 128 850-1001 75-221 (229)
11 TIGR01689 EcbF-BcbF capsule bi 98.4 9.8E-07 2.1E-11 85.8 9.2 107 853-969 2-121 (126)
12 TIGR01680 Veg_Stor_Prot vegeta 98.4 1.3E-06 2.8E-11 94.7 10.3 126 851-1000 100-247 (275)
13 PRK11009 aphA acid phosphatase 98.3 9.2E-07 2E-11 93.5 7.7 123 853-1000 64-212 (237)
14 PF03767 Acid_phosphat_B: HAD 98.3 2.9E-07 6.2E-12 96.1 1.6 135 850-1000 70-220 (229)
15 TIGR01533 lipo_e_P4 5'-nucleot 98.1 1E-05 2.2E-10 87.1 9.1 116 850-990 73-206 (266)
16 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 5.3E-05 1.1E-09 70.7 9.4 121 853-995 1-127 (132)
17 TIGR01672 AphA HAD superfamily 97.9 5.8E-05 1.3E-09 80.0 10.8 122 853-998 64-210 (237)
18 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.7 0.00017 3.7E-09 70.4 10.0 108 882-1009 82-196 (201)
19 TIGR00338 serB phosphoserine p 97.7 8.2E-05 1.8E-09 74.4 7.8 107 881-1007 86-199 (219)
20 TIGR01664 DNA-3'-Pase DNA 3'-p 97.5 0.00045 9.8E-09 69.0 9.9 129 850-995 11-158 (166)
21 TIGR01670 YrbI-phosphatas 3-de 97.4 0.0002 4.4E-09 70.1 5.4 121 853-1007 2-124 (154)
22 PRK10976 putative hydrolase; P 97.4 0.00061 1.3E-08 70.5 9.2 66 853-938 3-68 (266)
23 PLN02954 phosphoserine phospha 97.4 0.00037 8.1E-09 70.0 7.4 100 882-994 86-191 (224)
24 TIGR01656 Histidinol-ppas hist 97.4 0.00047 1E-08 66.5 7.7 126 853-994 1-140 (147)
25 TIGR00213 GmhB_yaeD D,D-heptos 97.3 0.00092 2E-08 66.2 9.1 130 853-995 2-146 (176)
26 PRK08942 D,D-heptose 1,7-bisph 97.3 0.0017 3.8E-08 64.2 10.1 129 852-994 3-142 (181)
27 PRK13582 thrH phosphoserine ph 97.2 0.00082 1.8E-08 66.5 7.5 94 882-994 70-166 (205)
28 PRK09484 3-deoxy-D-manno-octul 97.2 0.00091 2E-08 67.2 7.1 110 851-994 20-134 (183)
29 PRK01158 phosphoglycolate phos 97.1 0.0024 5.1E-08 64.4 9.1 66 853-938 4-69 (230)
30 PRK15126 thiamin pyrimidine py 97.1 0.0021 4.6E-08 67.0 8.7 67 853-939 3-69 (272)
31 TIGR01489 DKMTPPase-SF 2,3-dik 97.0 0.0029 6.2E-08 61.1 8.1 102 881-994 73-184 (188)
32 TIGR01261 hisB_Nterm histidino 96.9 0.0041 8.8E-08 62.2 9.2 127 852-995 1-143 (161)
33 PRK10513 sugar phosphate phosp 96.9 0.0028 6E-08 65.7 8.0 71 852-939 3-73 (270)
34 TIGR01487 SPP-like sucrose-pho 96.9 0.0026 5.7E-08 64.2 7.6 49 853-912 2-50 (215)
35 PRK09552 mtnX 2-hydroxy-3-keto 96.9 0.0026 5.7E-08 64.8 7.5 97 881-994 75-182 (219)
36 PRK11590 hypothetical protein; 96.8 0.0043 9.2E-08 63.3 7.9 110 882-1008 97-208 (211)
37 COG0561 Cof Predicted hydrolas 96.7 0.0032 7E-08 65.3 7.0 80 852-952 3-82 (264)
38 PRK10530 pyridoxal phosphate ( 96.7 0.0051 1.1E-07 63.4 8.3 69 852-940 3-71 (272)
39 TIGR01488 HAD-SF-IB Haloacid D 96.7 0.0032 6.9E-08 60.5 6.2 98 882-991 75-177 (177)
40 PF08282 Hydrolase_3: haloacid 96.7 0.004 8.8E-08 61.3 7.0 65 855-939 1-65 (254)
41 PRK10444 UMP phosphatase; Prov 96.6 0.0036 7.9E-08 66.3 6.2 68 853-935 2-69 (248)
42 TIGR01545 YfhB_g-proteo haloac 96.6 0.0045 9.6E-08 64.0 6.5 109 882-1009 96-208 (210)
43 TIGR02463 MPGP_rel mannosyl-3- 96.6 0.0053 1.2E-07 62.0 6.9 68 854-940 1-68 (221)
44 PRK11133 serB phosphoserine ph 96.6 0.0053 1.1E-07 67.9 7.4 111 882-1008 183-296 (322)
45 PRK13478 phosphonoacetaldehyde 96.5 0.012 2.5E-07 61.8 9.5 97 882-995 103-199 (267)
46 TIGR01663 PNK-3'Pase polynucle 96.5 0.0091 2E-07 70.3 9.5 57 850-907 166-224 (526)
47 PRK05446 imidazole glycerol-ph 96.5 0.023 4.9E-07 64.1 12.1 139 852-1005 2-151 (354)
48 PRK03669 mannosyl-3-phosphogly 96.5 0.0076 1.6E-07 63.5 7.9 70 851-939 6-75 (271)
49 TIGR03333 salvage_mtnX 2-hydro 96.5 0.0067 1.5E-07 61.8 6.9 96 881-993 71-177 (214)
50 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.5 0.005 1.1E-07 65.1 6.2 56 853-917 2-58 (257)
51 TIGR01482 SPP-subfamily Sucros 96.4 0.0054 1.2E-07 61.5 5.9 49 855-914 1-49 (225)
52 PRK13226 phosphoglycolate phos 96.4 0.016 3.5E-07 59.7 8.9 92 882-995 97-191 (229)
53 PTZ00174 phosphomannomutase; P 96.3 0.0073 1.6E-07 63.2 6.6 53 851-917 4-56 (247)
54 TIGR00099 Cof-subfamily Cof su 96.3 0.0087 1.9E-07 61.9 6.9 65 854-938 1-65 (256)
55 PF12710 HAD: haloacid dehalog 96.3 0.0014 3E-08 63.4 1.0 93 883-989 88-192 (192)
56 PRK08238 hypothetical protein; 96.3 0.02 4.4E-07 66.6 10.2 129 851-1008 9-171 (479)
57 PF13344 Hydrolase_6: Haloacid 96.3 0.0078 1.7E-07 56.0 5.6 52 855-918 1-52 (101)
58 TIGR01428 HAD_type_II 2-haloal 96.2 0.021 4.5E-07 56.7 8.8 100 882-1006 94-196 (198)
59 TIGR01668 YqeG_hyp_ppase HAD s 96.2 0.032 6.9E-07 55.7 9.7 108 850-994 23-131 (170)
60 PLN02645 phosphoglycolate phos 96.2 0.01 2.2E-07 64.5 6.7 55 851-917 27-81 (311)
61 TIGR01422 phosphonatase phosph 96.1 0.038 8.2E-07 57.3 10.5 97 882-995 101-197 (253)
62 PRK06769 hypothetical protein; 96.1 0.021 4.6E-07 57.1 8.3 124 852-995 4-133 (173)
63 PRK12702 mannosyl-3-phosphogly 96.1 0.038 8.2E-07 61.6 10.5 54 853-917 2-55 (302)
64 TIGR01486 HAD-SF-IIB-MPGP mann 96.0 0.013 2.9E-07 60.9 6.4 65 854-938 1-65 (256)
65 PRK00192 mannosyl-3-phosphogly 96.0 0.014 3E-07 61.6 6.6 50 852-912 4-53 (273)
66 TIGR01681 HAD-SF-IIIC HAD-supe 95.9 0.016 3.4E-07 55.5 6.1 59 853-911 1-61 (128)
67 TIGR02252 DREG-2 REG-2-like, H 95.9 0.039 8.5E-07 54.9 8.8 91 882-995 107-201 (203)
68 PF08645 PNK3P: Polynucleotide 95.8 0.01 2.2E-07 59.4 4.6 52 853-905 1-54 (159)
69 TIGR01549 HAD-SF-IA-v1 haloaci 95.8 0.037 7.9E-07 52.6 7.7 88 882-992 66-154 (154)
70 smart00577 CPDc catalytic doma 95.7 0.023 4.9E-07 55.4 6.2 123 852-997 2-140 (148)
71 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.7 0.021 4.6E-07 60.1 6.4 54 853-918 2-55 (249)
72 PLN03243 haloacid dehalogenase 95.6 0.038 8.2E-07 59.1 8.2 95 882-995 111-205 (260)
73 TIGR02461 osmo_MPG_phos mannos 95.6 0.022 4.8E-07 59.3 6.2 45 854-910 1-45 (225)
74 TIGR01452 PGP_euk phosphoglyco 95.6 0.024 5.3E-07 60.3 6.4 44 853-908 3-46 (279)
75 TIGR02726 phenyl_P_delta pheny 95.5 0.027 5.9E-07 57.2 6.2 111 852-995 7-121 (169)
76 TIGR01484 HAD-SF-IIB HAD-super 95.5 0.028 6E-07 56.1 6.1 48 854-911 1-48 (204)
77 PLN02779 haloacid dehalogenase 95.4 0.057 1.2E-06 58.3 8.7 94 882-995 146-242 (286)
78 PLN02887 hydrolase family prot 95.4 0.029 6.4E-07 66.8 7.0 59 842-911 298-356 (580)
79 PF15017 AF1Q: Drug resistance 95.3 0.0084 1.8E-07 56.3 1.8 29 1026-1054 5-34 (87)
80 PHA02597 30.2 hypothetical pro 95.2 0.036 7.7E-07 55.2 5.9 93 881-995 75-170 (197)
81 PRK14988 GMP/IMP nucleotidase; 95.1 0.1 2.2E-06 54.1 9.2 107 882-1008 95-201 (224)
82 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.1 0.14 3E-06 53.4 9.9 108 851-993 7-116 (242)
83 COG0546 Gph Predicted phosphat 95.0 0.16 3.4E-06 52.4 10.0 94 881-994 90-184 (220)
84 TIGR01990 bPGM beta-phosphoglu 94.9 0.035 7.6E-07 53.9 4.8 89 882-994 89-180 (185)
85 PRK13223 phosphoglycolate phos 94.8 0.095 2.1E-06 56.0 8.0 91 882-995 103-197 (272)
86 PRK13225 phosphoglycolate phos 94.4 0.094 2E-06 56.6 6.9 90 882-995 144-235 (273)
87 TIGR01685 MDP-1 magnesium-depe 94.4 0.14 2.9E-06 52.7 7.7 132 852-995 2-153 (174)
88 TIGR02137 HSK-PSP phosphoserin 94.3 0.19 4E-06 52.2 8.5 123 881-1026 69-196 (203)
89 TIGR01485 SPP_plant-cyano sucr 94.2 0.058 1.3E-06 56.2 4.8 53 853-913 2-54 (249)
90 COG0241 HisB Histidinol phosph 94.2 0.45 9.8E-06 49.8 11.1 132 851-994 4-144 (181)
91 PRK10187 trehalose-6-phosphate 94.2 0.1 2.2E-06 55.9 6.5 54 852-911 14-68 (266)
92 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.0 0.33 7.3E-06 48.2 9.4 113 882-1007 89-202 (202)
93 COG0560 SerB Phosphoserine pho 94.0 0.21 4.6E-06 52.4 8.3 115 882-1010 79-194 (212)
94 PLN02940 riboflavin kinase 94.0 0.14 2.9E-06 57.8 7.4 92 882-994 95-189 (382)
95 PRK14502 bifunctional mannosyl 93.6 0.13 2.8E-06 62.7 6.6 56 851-917 415-470 (694)
96 PRK09449 dUMP phosphatase; Pro 93.2 0.28 6E-06 49.6 7.5 90 882-995 97-192 (224)
97 COG0647 NagD Predicted sugar p 93.2 0.16 3.5E-06 55.7 6.1 70 852-935 8-77 (269)
98 COG2503 Predicted secreted aci 92.5 0.6 1.3E-05 51.5 9.0 70 849-918 76-161 (274)
99 TIGR01456 CECR5 HAD-superfamil 92.5 0.12 2.7E-06 56.6 4.0 41 854-906 2-46 (321)
100 TIGR01460 HAD-SF-IIA Haloacid 92.3 0.2 4.4E-06 52.4 5.1 39 855-905 1-39 (236)
101 PF05116 S6PP: Sucrose-6F-phos 92.1 0.16 3.6E-06 53.8 4.4 48 852-913 2-52 (247)
102 PLN02423 phosphomannomutase 92.0 0.34 7.4E-06 51.3 6.5 51 852-917 6-57 (245)
103 PLN02575 haloacid dehalogenase 91.9 0.47 1E-05 54.4 7.8 94 882-994 218-311 (381)
104 PHA03398 viral phosphatase sup 91.8 0.62 1.3E-05 52.3 8.4 83 852-950 128-212 (303)
105 TIGR01684 viral_ppase viral ph 91.3 0.46 1E-05 53.2 6.9 58 845-911 120-177 (301)
106 PF11019 DUF2608: Protein of u 91.2 0.73 1.6E-05 49.8 8.0 78 851-931 19-129 (252)
107 PLN02919 haloacid dehalogenase 91.1 0.6 1.3E-05 59.4 8.4 92 882-994 163-257 (1057)
108 TIGR01686 FkbH FkbH-like domai 91.1 1.6 3.4E-05 48.0 10.5 122 851-993 2-124 (320)
109 TIGR02471 sucr_syn_bact_C sucr 90.2 0.36 7.7E-06 49.8 4.5 45 854-911 1-45 (236)
110 TIGR02251 HIF-SF_euk Dullard-l 90.1 0.29 6.4E-06 49.0 3.7 121 853-997 2-137 (162)
111 PLN02382 probable sucrose-phos 89.7 0.51 1.1E-05 54.1 5.6 58 852-917 9-66 (413)
112 PF03031 NIF: NLI interacting 89.6 0.61 1.3E-05 45.3 5.3 64 853-917 1-72 (159)
113 PF06941 NT5C: 5' nucleotidase 88.8 0.42 9.1E-06 48.3 3.7 38 881-918 74-115 (191)
114 TIGR01449 PGP_bact 2-phosphogl 87.9 2.5 5.5E-05 42.2 8.5 96 881-995 86-181 (213)
115 cd03016 PRX_1cys Peroxiredoxin 87.7 3.3 7.2E-05 42.9 9.4 79 855-937 9-97 (203)
116 PRK10748 flavin mononucleotide 87.0 1.8 3.9E-05 45.2 7.1 25 977-1004 185-210 (238)
117 COG3700 AphA Acid phosphatase 86.5 2.1 4.5E-05 45.9 7.2 125 851-999 62-211 (237)
118 PRK14501 putative bifunctional 86.5 1.2 2.7E-05 54.1 6.4 60 850-918 490-550 (726)
119 TIGR00685 T6PP trehalose-phosp 86.4 1.3 2.8E-05 46.6 5.8 51 851-907 2-53 (244)
120 PLN03017 trehalose-phosphatase 83.4 2 4.4E-05 49.3 6.0 54 850-913 109-165 (366)
121 TIGR01509 HAD-SF-IA-v3 haloaci 83.4 1.8 4E-05 41.7 4.8 16 854-869 1-16 (183)
122 PF00578 AhpC-TSA: AhpC/TSA fa 83.2 3.9 8.4E-05 37.3 6.6 74 855-937 9-91 (124)
123 PRK10826 2-deoxyglucose-6-phos 83.1 4.3 9.3E-05 41.4 7.6 100 882-1002 94-193 (222)
124 PF13419 HAD_2: Haloacid dehal 81.6 3.8 8.2E-05 38.3 6.1 94 881-995 78-173 (176)
125 PRK13222 phosphoglycolate phos 81.5 9.5 0.00021 38.4 9.2 95 881-995 94-189 (226)
126 TIGR01544 HAD-SF-IE haloacid d 80.1 11 0.00023 42.2 9.7 129 881-1025 122-260 (277)
127 COG3769 Predicted hydrolase (H 80.0 4.6 0.0001 44.5 6.8 55 851-917 6-60 (274)
128 COG5663 Uncharacterized conser 79.5 3 6.4E-05 44.3 5.0 70 897-995 88-157 (194)
129 TIGR01454 AHBA_synth_RP 3-amin 79.3 8.6 0.00019 38.7 8.1 94 881-995 76-171 (205)
130 COG4359 Uncharacterized conser 79.1 2 4.4E-05 46.1 3.7 37 882-921 75-111 (220)
131 PRK13599 putative peroxiredoxi 78.8 14 0.0003 39.3 9.7 52 882-937 48-100 (215)
132 PF12689 Acid_PPase: Acid Phos 77.5 8.8 0.00019 39.9 7.7 130 851-995 2-147 (169)
133 TIGR02253 CTE7 HAD superfamily 77.2 2.9 6.2E-05 42.1 4.1 15 853-867 3-17 (221)
134 PLN02151 trehalose-phosphatase 76.0 5.1 0.00011 46.0 6.0 55 849-910 95-149 (354)
135 TIGR02540 gpx7 putative glutat 75.9 9.6 0.00021 37.2 7.2 62 857-918 8-82 (153)
136 PRK13288 pyrophosphatase PpaX; 75.4 5.9 0.00013 40.1 5.8 93 882-995 84-178 (214)
137 TIGR03351 PhnX-like phosphonat 74.9 16 0.00035 37.1 8.7 99 881-995 88-186 (220)
138 PRK13190 putative peroxiredoxi 74.5 13 0.00029 38.7 8.1 76 858-937 15-99 (202)
139 TIGR01511 ATPase-IB1_Cu copper 74.4 17 0.00037 43.4 10.0 101 854-994 387-488 (562)
140 PRK11587 putative phosphatase; 72.3 14 0.0003 37.9 7.5 92 882-995 85-178 (218)
141 PLN02770 haloacid dehalogenase 72.2 13 0.00028 39.3 7.5 95 882-995 110-204 (248)
142 PRK10725 fructose-1-P/6-phosph 71.4 2.1 4.7E-05 42.0 1.5 16 852-867 5-20 (188)
143 PLN02205 alpha,alpha-trehalose 70.9 7.6 0.00017 49.0 6.4 57 851-918 595-652 (854)
144 TIGR03351 PhnX-like phosphonat 70.8 2.3 4.9E-05 43.0 1.6 15 853-867 2-16 (220)
145 TIGR01525 ATPase-IB_hvy heavy 70.8 27 0.00058 41.6 10.4 86 878-993 382-468 (556)
146 PTZ00056 glutathione peroxidas 70.7 19 0.0004 37.7 8.2 64 855-918 23-99 (199)
147 TIGR02009 PGMB-YQAB-SF beta-ph 70.6 11 0.00025 36.7 6.3 94 880-994 88-181 (185)
148 PF09419 PGP_phosphatase: Mito 69.4 14 0.00031 38.5 7.0 51 847-907 36-88 (168)
149 TIGR01509 HAD-SF-IA-v3 haloaci 68.9 21 0.00046 34.5 7.6 90 880-994 85-179 (183)
150 cd03015 PRX_Typ2cys Peroxiredo 68.3 40 0.00087 33.7 9.6 130 855-1028 9-156 (173)
151 PRK09456 ?-D-glucose-1-phospha 67.3 16 0.00035 36.9 6.8 91 882-995 86-181 (199)
152 TIGR01691 enolase-ppase 2,3-di 67.3 15 0.00032 39.3 6.7 95 881-995 96-192 (220)
153 PF00702 Hydrolase: haloacid d 66.9 12 0.00026 36.9 5.6 90 878-992 125-215 (215)
154 TIGR02009 PGMB-YQAB-SF beta-ph 66.7 3 6.6E-05 40.6 1.4 16 853-868 2-17 (185)
155 PRK13288 pyrophosphatase PpaX; 66.5 3.2 6.9E-05 42.0 1.6 16 852-867 3-18 (214)
156 cd03018 PRX_AhpE_like Peroxire 66.5 57 0.0012 31.0 9.9 34 882-918 48-81 (149)
157 PRK13222 phosphoglycolate phos 66.5 3 6.5E-05 41.9 1.4 16 852-867 6-21 (226)
158 PLN02580 trehalose-phosphatase 66.4 11 0.00025 43.7 6.1 53 851-910 118-170 (384)
159 PF02358 Trehalose_PPase: Treh 66.2 8.4 0.00018 40.3 4.6 48 856-909 1-49 (235)
160 COG1877 OtsB Trehalose-6-phosp 65.5 12 0.00025 41.6 5.7 54 849-908 15-69 (266)
161 PRK11587 putative phosphatase; 64.3 3.7 7.9E-05 42.0 1.6 16 852-867 3-18 (218)
162 cd03017 PRX_BCP Peroxiredoxin 63.9 50 0.0011 31.0 8.9 34 882-918 43-76 (140)
163 PRK13191 putative peroxiredoxi 63.9 36 0.00079 36.2 8.8 104 882-1028 53-160 (215)
164 cd00340 GSH_Peroxidase Glutath 63.7 32 0.00069 33.7 7.8 62 857-918 8-81 (152)
165 cd03012 TlpA_like_DipZ_like Tl 63.4 17 0.00037 34.2 5.7 37 882-918 42-81 (126)
166 PTZ00256 glutathione peroxidas 62.6 36 0.00078 34.7 8.2 61 858-918 27-101 (183)
167 TIGR01106 ATPase-IIC_X-K sodiu 62.3 25 0.00055 45.0 8.6 113 875-994 562-707 (997)
168 PRK10671 copA copper exporting 61.4 29 0.00064 43.3 8.7 86 878-993 648-733 (834)
169 TIGR02250 FCP1_euk FCP1-like p 61.0 21 0.00045 36.2 6.1 67 850-917 4-94 (156)
170 TIGR01548 HAD-SF-IA-hyp1 haloa 60.6 4.1 8.8E-05 41.0 1.1 15 853-867 1-15 (197)
171 TIGR02253 CTE7 HAD superfamily 60.1 38 0.00082 34.3 7.8 93 881-995 95-191 (221)
172 TIGR01490 HAD-SF-IB-hyp1 HAD-s 59.6 4 8.7E-05 40.7 0.9 16 854-869 1-16 (202)
173 PLN02770 haloacid dehalogenase 58.6 5.2 0.00011 42.2 1.6 16 852-867 22-37 (248)
174 COG4087 Soluble P-type ATPase 58.0 35 0.00077 35.4 7.1 105 857-1005 19-123 (152)
175 TIGR01116 ATPase-IIA1_Ca sarco 57.9 38 0.00082 43.1 8.9 107 875-994 531-652 (917)
176 TIGR02254 YjjG/YfnB HAD superf 57.9 5.4 0.00012 40.0 1.5 93 882-995 99-194 (224)
177 TIGR02247 HAD-1A3-hyp Epoxide 57.6 16 0.00035 36.9 4.8 96 881-995 95-192 (211)
178 COG1778 Low specificity phosph 56.7 42 0.00091 35.6 7.5 112 851-995 7-122 (170)
179 TIGR01497 kdpB K+-transporting 56.5 47 0.001 41.4 9.2 87 878-994 444-530 (675)
180 TIGR03137 AhpC peroxiredoxin. 55.0 78 0.0017 32.5 9.2 34 882-918 51-84 (187)
181 cd02969 PRX_like1 Peroxiredoxi 54.9 62 0.0013 32.1 8.2 48 883-936 45-97 (171)
182 PF00702 Hydrolase: haloacid d 54.4 7.5 0.00016 38.3 1.8 41 957-1000 133-173 (215)
183 PRK13189 peroxiredoxin; Provis 53.5 91 0.002 33.3 9.7 104 882-1028 55-162 (222)
184 TIGR02254 YjjG/YfnB HAD superf 53.5 61 0.0013 32.6 8.0 16 853-868 2-17 (224)
185 PRK06698 bifunctional 5'-methy 53.2 55 0.0012 38.0 8.6 91 882-994 332-422 (459)
186 TIGR01993 Pyr-5-nucltdase pyri 52.7 7.9 0.00017 38.3 1.7 14 854-867 2-15 (184)
187 PRK10563 6-phosphogluconate ph 51.5 8.2 0.00018 39.2 1.6 19 977-995 164-182 (221)
188 PRK10826 2-deoxyglucose-6-phos 51.4 7.9 0.00017 39.6 1.4 17 851-867 6-22 (222)
189 COG0637 Predicted phosphatase/ 51.0 8.3 0.00018 40.4 1.5 98 881-1003 87-187 (221)
190 PF06888 Put_Phosphatase: Puta 50.4 30 0.00065 37.8 5.6 48 882-937 73-124 (234)
191 TIGR01493 HAD-SF-IA-v2 Haloaci 50.3 6.9 0.00015 38.1 0.8 14 854-867 1-14 (175)
192 COG4996 Predicted phosphatase 49.9 14 0.0003 38.3 2.9 18 853-870 1-18 (164)
193 TIGR01512 ATPase-IB2_Cd heavy 48.5 65 0.0014 38.4 8.4 86 878-993 360-446 (536)
194 TIGR01449 PGP_bact 2-phosphogl 47.9 7.5 0.00016 38.9 0.6 13 855-867 1-13 (213)
195 TIGR02247 HAD-1A3-hyp Epoxide 47.2 10 0.00022 38.3 1.5 15 853-867 3-17 (211)
196 TIGR01459 HAD-SF-IIA-hyp4 HAD- 46.9 47 0.001 35.0 6.3 92 880-994 138-236 (242)
197 TIGR01522 ATPase-IIA2_Ca golgi 46.3 80 0.0017 40.1 9.2 103 878-993 526-638 (884)
198 PTZ00445 p36-lilke protein; Pr 45.5 1.1E+02 0.0023 33.8 8.7 139 847-995 38-201 (219)
199 PF13464 DUF4115: Domain of un 45.3 25 0.00055 31.4 3.5 25 43-75 37-61 (77)
200 PTZ00253 tryparedoxin peroxida 44.8 1.1E+02 0.0024 31.7 8.5 25 883-907 57-81 (199)
201 cd02970 PRX_like2 Peroxiredoxi 43.0 1.2E+02 0.0027 28.4 7.9 49 882-939 43-91 (149)
202 TIGR01454 AHBA_synth_RP 3-amin 42.8 10 0.00022 38.3 0.6 25 980-1004 129-157 (205)
203 TIGR01524 ATPase-IIIB_Mg magne 42.7 66 0.0014 40.8 7.7 101 878-993 513-623 (867)
204 PLN02177 glycerol-3-phosphate 42.6 14 0.00029 44.2 1.8 34 954-992 175-208 (497)
205 PLN02811 hydrolase 41.7 70 0.0015 33.0 6.5 98 881-995 79-180 (220)
206 TIGR01647 ATPase-IIIA_H plasma 41.6 99 0.0021 38.7 8.8 104 878-995 440-559 (755)
207 PLN03064 alpha,alpha-trehalose 41.1 51 0.0011 42.5 6.4 62 851-917 590-657 (934)
208 PRK14010 potassium-transportin 40.7 1.2E+02 0.0025 38.0 9.2 88 878-995 439-528 (673)
209 PLN03063 alpha,alpha-trehalose 40.5 53 0.0012 41.4 6.4 61 851-917 506-567 (797)
210 KOG2134 Polynucleotide kinase 40.1 26 0.00057 41.3 3.5 78 849-928 72-156 (422)
211 PF10307 DUF2410: Hypothetical 39.4 1.8E+02 0.0038 31.6 9.1 99 877-991 51-152 (197)
212 KOG1615 Phosphoserine phosphat 38.3 93 0.002 34.3 6.9 121 881-1020 89-216 (227)
213 COG1225 Bcp Peroxiredoxin [Pos 37.4 1.7E+02 0.0037 30.7 8.4 111 858-1011 17-136 (157)
214 TIGR02245 HAD_IIID1 HAD-superf 37.4 79 0.0017 33.8 6.2 63 850-917 19-81 (195)
215 PTZ00137 2-Cys peroxiredoxin; 37.2 1.6E+02 0.0035 32.8 8.7 102 882-1028 118-224 (261)
216 PRK01122 potassium-transportin 37.1 1.4E+02 0.0029 37.5 9.0 88 878-995 443-532 (679)
217 PRK15122 magnesium-transportin 36.4 95 0.0021 39.8 7.7 103 878-995 548-662 (903)
218 TIGR01517 ATPase-IIB_Ca plasma 35.9 1.6E+02 0.0034 37.9 9.5 103 878-995 577-693 (941)
219 PRK06698 bifunctional 5'-methy 35.7 16 0.00034 42.3 0.9 16 853-868 242-257 (459)
220 PRK09437 bcp thioredoxin-depen 35.7 2.8E+02 0.006 27.0 9.2 46 882-936 50-95 (154)
221 PRK09456 ?-D-glucose-1-phospha 34.9 22 0.00048 35.9 1.7 26 978-1003 137-166 (199)
222 TIGR01452 PGP_euk phosphoglyco 34.8 1E+02 0.0023 33.3 6.8 26 880-906 143-168 (279)
223 PF13419 HAD_2: Haloacid dehal 33.8 19 0.00041 33.7 0.9 14 855-868 1-14 (176)
224 TIGR01548 HAD-SF-IA-hyp1 haloa 33.5 1.4E+02 0.003 30.2 7.0 90 881-990 107-196 (197)
225 PF08534 Redoxin: Redoxin; In 33.4 2.3E+02 0.005 27.0 8.2 58 858-918 15-81 (146)
226 PRK11033 zntA zinc/cadmium/mer 33.4 1.4E+02 0.0029 37.5 8.2 84 878-993 566-649 (741)
227 cd02971 PRX_family Peroxiredox 33.2 3E+02 0.0064 25.8 8.7 34 882-918 42-75 (140)
228 PRK00522 tpx lipid hydroperoxi 32.6 5E+02 0.011 26.3 10.7 70 855-934 28-106 (167)
229 cd02966 TlpA_like_family TlpA- 31.3 54 0.0012 28.3 3.3 36 973-1010 78-113 (116)
230 COG1011 Predicted hydrolase (H 31.3 27 0.00058 35.2 1.6 18 851-868 3-20 (229)
231 PTZ00254 40S ribosomal protein 31.0 46 0.00099 37.1 3.4 89 807-922 7-96 (249)
232 PF10340 DUF2424: Protein of u 30.5 2.2E+02 0.0047 33.6 8.7 147 855-1008 156-315 (374)
233 PRK15000 peroxidase; Provision 30.4 3.1E+02 0.0068 28.9 9.2 102 882-1027 54-160 (200)
234 PLN02412 probable glutathione 30.3 2.5E+02 0.0054 28.4 8.2 25 882-906 48-72 (167)
235 PF05152 DUF705: Protein of un 29.4 88 0.0019 35.8 5.2 63 846-920 117-179 (297)
236 TIGR01523 ATPase-IID_K-Na pota 29.1 2.1E+02 0.0045 37.5 9.1 103 878-994 644-769 (1053)
237 PRK10382 alkyl hydroperoxide r 27.9 2.8E+02 0.0061 29.1 8.3 33 883-918 52-84 (187)
238 KOG0207 Cation transport ATPas 27.8 2.4E+02 0.0052 36.8 9.0 103 853-994 704-809 (951)
239 TIGR01494 ATPase_P-type ATPase 26.5 3.5E+02 0.0076 31.9 9.6 83 878-993 345-427 (499)
240 PRK03147 thiol-disulfide oxido 26.0 5.3E+02 0.011 25.2 9.4 35 882-918 80-114 (173)
241 cd02071 MM_CoA_mut_B12_BD meth 25.7 6.2E+02 0.013 24.5 10.0 96 877-994 8-104 (122)
242 TIGR01458 HAD-SF-IIA-hyp3 HAD- 25.7 1.1E+02 0.0023 33.1 4.9 94 879-995 119-220 (257)
243 PRK10856 cytoskeletal protein 24.6 55 0.0012 37.4 2.7 28 43-78 290-317 (331)
244 PRK10517 magnesium-transportin 22.8 2.9E+02 0.0062 35.7 8.6 103 878-995 548-662 (902)
245 KOG1618 Predicted phosphatase 22.3 1.1E+02 0.0024 35.9 4.4 72 850-935 33-108 (389)
246 PLN02499 glycerol-3-phosphate 21.8 49 0.0011 40.1 1.7 79 892-985 105-185 (498)
247 COG1654 BirA Biotin operon rep 21.5 84 0.0018 29.6 2.8 39 881-937 32-70 (79)
248 PRK10513 sugar phosphate phosp 21.3 76 0.0016 33.4 2.8 40 954-994 195-234 (270)
249 KOG2882 p-Nitrophenyl phosphat 20.6 1.2E+02 0.0026 35.0 4.2 43 853-907 23-65 (306)
No 1
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=100.00 E-value=5e-133 Score=1123.97 Aligned_cols=297 Identities=51% Similarity=0.794 Sum_probs=266.5
Q ss_pred eecCCCCceEeeecc-cccCCCCCCCCcccCCCCCCCccCCCccccCCCCccccccccccccccccCCCHHHHHhcCCCC
Q 001520 744 ITVSPGGSWRLWPFF-RRSRSGKAMQPVISGTKSSDTEVASDSINDRDGNRSVCKTNMAKKKIKVLTPTSEQLASLNLKE 822 (1061)
Q Consensus 744 ~~~~~~~~wr~~~~~-~~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~kk~~rsLrpTSeQL~kLNLk~ 822 (1061)
......++|..|++. .|+++.....+.-++. + .+.+....++..++++.|+||||+|||++||||.
T Consensus 434 ~~~~~~~s~s~t~~~~~~~~~~~~~~~s~s~~--~-----------~e~~~~~sse~~~~qy~rtLrltSEQL~sLnLk~ 500 (738)
T KOG2116|consen 434 RTPTSTPSNSKTPDRSKRFGKEADIASSTSEQ--S-----------PEENRSSSSENPRPQYVRTLRLTSEQLKSLNLKD 500 (738)
T ss_pred cccccCCCcccCcccccccccccCCCCCCccc--C-----------ccccccCCCCCcchhhhhhcccCHHHHhhcCCcc
Confidence 455567788888883 4444433221111111 1 1111222233568888999999999999999999
Q ss_pred CCceEEEEEEeecccceeeeEEEEEecCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEE
Q 001520 823 GKNSVTFTFSTAMLGKQQVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFL 902 (1061)
Q Consensus 823 G~N~V~FsVtT~~qGt~~Vea~IYLW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYL 902 (1061)
|.|.|+|+|+|+|||+++|+|+||||+|++||||||||||||||||+||++|+|||||||.|||+||++|++||||||||
T Consensus 501 G~N~v~FsisT~~~Gt~~c~~~IYlWkWn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyL 580 (738)
T KOG2116|consen 501 GKNDVVFSISTQYQGTAQCEGNIYLWKWNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYL 580 (738)
T ss_pred CCceeEEEEEecccceEEEeeEEEEEecCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCc
Q 001520 903 SARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRD 982 (1061)
Q Consensus 903 SARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~ 982 (1061)
|||+|+||++||.||+||+|+|+.||+|||+|||++||+||+||||.|+||+||||||++|++|||+.+||||||||||+
T Consensus 581 SARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~ 660 (738)
T KOG2116|consen 581 SARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRI 660 (738)
T ss_pred ehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCCceeeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhhcCCCCCcEEEECCCCceeeeccc-CCcchhhhhhhccccCCCCCCCCCc-----ccccccccccccccc
Q 001520 983 TDEISYLKVGIPRGKIFIINPKGEVVVNHRV-DSKTYSSIHALVHGMFPHTTSTEQV-----FFLHFFFLCSILGLF 1053 (1061)
Q Consensus 983 TDv~AYraVGIP~sRIFiINpkGel~~e~~~-~~sSY~sL~elVD~~FPpl~~~~~~-----~fs~f~yWr~pL~~~ 1053 (1061)
||+++|++||||.+|||||||+|||++++.. ..+||++|+++|||||||+...+.+ +|++|+|||+|||.+
T Consensus 661 TDviSY~~VgVP~~RIFtINpkGEv~~e~~~~~~~SY~~l~elVd~mFPplS~~~~~~~~~~~fs~fnfWr~p~~~v 737 (738)
T KOG2116|consen 661 TDVISYRQVGVPLSRIFTINPKGEVIQELLKTLKSSYVRLNELVDHMFPPLSRSTSDDFPNPEFSNFNFWREPLPEV 737 (738)
T ss_pred ccceeeeeecCCccceEEECCCceehHHHHhhhhhhhhhHHHHHHHhCCCccccccccCCccccCCceeecCCCccC
Confidence 9999999999999999999999999999876 5799999999999999999988755 899999999999975
No 2
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=100.00 E-value=1.7e-93 Score=779.08 Aligned_cols=243 Identities=44% Similarity=0.744 Sum_probs=226.9
Q ss_pred ccccccccCCCHHHHHhcCCCCCCceEEEEEEeecccceeeeEEEEEecCCCcEEEEecCCcccccccccccccccCCCC
Q 001520 801 AKKKIKVLTPTSEQLASLNLKEGKNSVTFTFSTAMLGKQQVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDW 880 (1061)
Q Consensus 801 ~kk~~rsLrpTSeQL~kLNLk~G~N~V~FsVtT~~qGt~~Vea~IYLW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDW 880 (1061)
.+.+.++++++++||..|||++|.|.+.|.|. .|.+.|+++||+|.|+.|+|||||||||||||++||+..++||||
T Consensus 327 ~~d~~~tiklnsdqLr~LnLkyGkn~lkf~V~---g~~a~~t~~ifvwr~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw 403 (580)
T COG5083 327 VTDYNGTIKLNSDQLRNLNLKYGKNLLKFYVE---GGKAIATMYIFVWRNNKKIVVSDIDGTITKSDALGHVKQMIGKDW 403 (580)
T ss_pred eecccceEEcCChHHhcccCccCcceEEEEEc---CCccEEEEEEEEEeCCCcEEEEecCCcEEehhhHHHHHHHhccch
Confidence 34456788999999999999999999999997 367899999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
||.|||+||.+|.+|||+|+|||||+.+|++.||.||+++.|+|+.||+||++|+|++.+.||+||+|.++||.|||+||
T Consensus 404 th~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayL 483 (580)
T COG5083 404 THNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYL 483 (580)
T ss_pred hhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeeccc--CCcchhhhhhhccccCCCCCCCC--
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRV--DSKTYSSIHALVHGMFPHTTSTE-- 1036 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~--~~sSY~sL~elVD~~FPpl~~~~-- 1036 (1061)
++|+.+|.. .+|||||||||.||+++|+.||||++||||||.+|||+.+... ++++|..|+++|||||||+.-+.
T Consensus 484 ndl~slf~e-~~PFyAGFGNriTDvisY~~vgIp~SrIFTIn~~gev~~ell~~sy~~sy~~mne~VDhfFPp~s~~t~d 562 (580)
T COG5083 484 NDLKSLFIE-FDPFYAGFGNRITDVISYSNVGIPKSRIFTINKNGEVHGELLIVSYRSSYKQMNELVDHFFPPLSPKTID 562 (580)
T ss_pred HHHHHhhCc-CChhhccccccchhheeeccccCChhheEEeccCCcEEEEEEEeehhhHHHHHhhhhhhcCCCCCCcccc
Confidence 999999976 5799999999999999999999999999999999999998643 67999999999999999997653
Q ss_pred --Ccccccccccccc
Q 001520 1037 --QVFFLHFFFLCSI 1049 (1061)
Q Consensus 1037 --~~~fs~f~yWr~p 1049 (1061)
...|+.| |..+
T Consensus 563 ~~~~~~~v~--~Sp~ 575 (580)
T COG5083 563 FIDHSFSVF--WSPQ 575 (580)
T ss_pred ccccccccc--CCCc
Confidence 3345554 8764
No 3
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=100.00 E-value=1.9e-58 Score=454.69 Aligned_cols=157 Identities=61% Similarity=1.094 Sum_probs=154.9
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
|||||||||||+||++||+++++|+||+|+|||+||++|++|||+|+||||||++|+++||.||++++|++++||+|||+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~ 80 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVL 80 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeee
Q 001520 934 ISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVN 1010 (1061)
Q Consensus 934 LSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e 1010 (1061)
++|++|++||+||++.++|++||++||++|+++||...+|||||||||.||+.||++||||++||||||++|++++|
T Consensus 81 ~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~rIF~I~~~g~~~~~ 157 (157)
T PF08235_consen 81 LSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKSRIFIINPKGEVKQE 157 (157)
T ss_pred ECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChhhEEEECCCCeEecC
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999865
No 4
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=100.00 E-value=8.7e-43 Score=339.18 Aligned_cols=156 Identities=63% Similarity=1.074 Sum_probs=152.3
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
+||||||||||+||++||+++++|++|.|+|++++|++++++||+|+|+||||++++..||.||..+.|.++++|.||++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li 80 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceee
Q 001520 934 ISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVV 1009 (1061)
Q Consensus 934 LSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~ 1009 (1061)
+++++++.++.+|++.++|++||+++|+.|+++||...+|||+|||||++|+.||+++|||++|||+|||+|++++
T Consensus 81 ~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 81 LSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred EcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhEEEECCCCcccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999999999975
No 5
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=100.00 E-value=3.8e-38 Score=295.53 Aligned_cols=92 Identities=55% Similarity=0.889 Sum_probs=87.2
Q ss_pred Cccc-cccccccccceeeccCCCcCCCCceeEEEEecCCCccccCCceEeccccccccccCCcEEEEEECCeecceeeee
Q 001520 1 MYTV-GRIGSYISRGVYTVSAPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMYL 79 (1061)
Q Consensus 1 M~yV-gr~~s~is~~~y~~s~p~~tLSGAIDVIVVeqpDGsl~sSPFHVRFGK~qgvLr~~eK~V~i~VNG~~~~~~MkL 79 (1061)
|||| ||+.++|+ .+|+..|| +||||||||||||||||+|+||||||||||+ |+||+++|+|+|.|||++++++|||
T Consensus 1 M~yv~~~i~~~v~-~~~~~~np-atlSGAiDVIVV~q~DGs~~sSPFhVRFGk~-~vl~~~ek~V~I~VNG~~~~~~MkL 77 (110)
T PF04571_consen 1 MNYVAGRIFSSVS-EVYNPINP-ATLSGAIDVIVVEQPDGSLKSSPFHVRFGKL-GVLRPREKVVDIEVNGKPVDFHMKL 77 (110)
T ss_pred CceehHhHhhhHH-HHhccCCc-ccccCceeEEEEecCCCCEecCccEEEEcce-eeecccCcEEEEEECCEEcceEEEE
Confidence 9999 99999997 57777788 8999999999999999999999999999999 5999999999999999999999999
Q ss_pred CCCccEEEEeeccccc
Q 001520 80 DHKGEAYFLKEADVEE 95 (1061)
Q Consensus 80 g~~GEAfFv~e~~~~~ 95 (1061)
|++|||||+++++++.
T Consensus 78 g~~GeAfFv~e~~~~~ 93 (110)
T PF04571_consen 78 GENGEAFFVEETEDDE 93 (110)
T ss_pred CCCcEEEEEEecCCCc
Confidence 9999999999998764
No 6
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=3.8e-11 Score=131.10 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=128.0
Q ss_pred HhcCCCCCCceEEEEEEeecccceeeeEEEEEecCCCcEEEEecCCccccccccccc-------ccccCCCCChhhHHHH
Q 001520 816 ASLNLKEGKNSVTFTFSTAMLGKQQVDARIYLWKWNTRIVISDVDGTITKSDVLGQF-------MPLVGVDWSQTGVAHL 888 (1061)
Q Consensus 816 ~kLNLk~G~N~V~FsVtT~~qGt~~Vea~IYLW~~~dKIVISDIDGTITKSDvlGhI-------lP~LGKDWTH~GVAkL 888 (1061)
.-+++.+|+++|...+.+. + ...-.+.+-+.+...-.+|||||+||..++|.+-. +-+--..|+.|||..+
T Consensus 127 ~~~~~~~g~~av~lq~eg~-~-~~Ae~~~~~v~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~ 204 (373)
T COG4850 127 IPFPPTKGNHAVRLQSEGE-K-IKAEAAPVPVLNRAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAW 204 (373)
T ss_pred cccCCCCCceeEEeecCCC-C-cchhcccceeecccceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHH
Confidence 3467888998988877542 1 11112333344555666999999999999987632 1123568999999999
Q ss_pred HHHHHHCC-CeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCC-CCccchhhhhccCchHHHHHHHHHHHhh
Q 001520 889 FSAIKENG-YQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDG-LFPSLFREVIRRAPHEFKIACLEDIKAL 966 (1061)
Q Consensus 889 YskI~~NG-YkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPds-Lf~AL~REVI~KrPeeFKIacL~dI~~L 966 (1061)
|+.+++-| .+|+|||..||+....+.+||. .++||.||+||..-+ .+.- |...-..-|...|+.|..-
T Consensus 205 yr~l~~~~~apvfYvSnSPw~~f~~L~efi~-----~~~~P~GPl~L~~~g~~~~~-----i~~sga~rK~~~l~nil~~ 274 (373)
T COG4850 205 YRALTNLGDAPVFYVSNSPWQLFPTLQEFIT-----NRNFPYGPLLLRRWGGVLDN-----IIESGAARKGQSLRNILRR 274 (373)
T ss_pred HHHHHhcCCCCeEEecCChhHhHHHHHHHHh-----cCCCCCCchhHhhcCCcccc-----cccchhhhcccHHHHHHHh
Confidence 99999999 9999999999999999999994 788999999998433 2222 2223446688888878888
Q ss_pred CCCCCCCEEEecCCCchhHHhHhhc-CCCCCcEEE
Q 001520 967 FPSDCNPFYAGFGNRDTDEISYLKV-GIPRGKIFI 1000 (1061)
Q Consensus 967 FP~~~nPFyAGFGNR~TDv~AYraV-GIP~sRIFi 1000 (1061)
||.. .|+.-.++..+|.++|..+ ---++||.-
T Consensus 275 ~p~~--kfvLVGDsGE~DpeIYae~v~~fP~RIl~ 307 (373)
T COG4850 275 YPDR--KFVLVGDSGEHDPEIYAEMVRCFPNRILG 307 (373)
T ss_pred CCCc--eEEEecCCCCcCHHHHHHHHHhCccceee
Confidence 8875 7888999999999999984 445666543
No 7
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.87 E-value=3.2e-09 Score=110.84 Aligned_cols=177 Identities=20% Similarity=0.153 Sum_probs=116.6
Q ss_pred cCCCHHHHHhcCCCCCCceEEEEE-Eeecccc-eeeeE--EEEE-ecCCCcEEEEecCCccccccccccccc-ccCCCCC
Q 001520 808 LTPTSEQLASLNLKEGKNSVTFTF-STAMLGK-QQVDA--RIYL-WKWNTRIVISDVDGTITKSDVLGQFMP-LVGVDWS 881 (1061)
Q Consensus 808 LrpTSeQL~kLNLk~G~N~V~FsV-tT~~qGt-~~Vea--~IYL-W~~~dKIVISDIDGTITKSDvlGhIlP-~LGKDWT 881 (1061)
|..+.+++..++.++|.+.+.-.+ ..++.-. .+.+. -+|. .....+++++|+||||....-..+.-+ ....+-.
T Consensus 109 l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~ 188 (300)
T PHA02530 109 FDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKP 188 (300)
T ss_pred eCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCCCCccchhhcccCCC
Confidence 556788888888888776654333 3333221 12121 2222 233457899999999997432111111 1222345
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch-HHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH-EFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe-eFKIacL 960 (1061)
.+|+.++.+.++++||+++++|+|+..++..|.+||.. .+.+--.++..+. ...++|+...++|+ +.+..+|
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~-----~~~~f~~i~~~~~--~~~~~~~~~~~kp~p~~~~~~l 261 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ-----TDIWFDDLIGRPP--DMHFQREQGDKRPDDVVKEEIF 261 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH-----cCCchhhhhCCcc--hhhhcccCCCCCCcHHHHHHHH
Confidence 89999999999999999999999999999999999952 2211122333321 23357887778888 7888888
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+.+....| .-...||++.+|+.+++++||++
T Consensus 262 ~~~~~~~~----~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 262 WEKIAPKY----DVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred HHHhccCc----eEEEEEcCcHHHHHHHHHhCCeE
Confidence 87532111 22347999999999999999985
No 8
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=98.81 E-value=1.6e-08 Score=94.86 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=74.3
Q ss_pred eEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEe
Q 001520 898 QLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAG 977 (1061)
Q Consensus 898 kILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAG 977 (1061)
+|+|||++||.++...++||. .+++|.||++|..-+.. .+..+....++.|...|+.|...||.. +|+.-
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~-----~~~~P~G~~~Lr~~~~~---~~~~~~~~~~~~K~~~i~~i~~~fP~~--kfiLI 70 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLR-----RNGFPAGPLLLRDYGPS---LSGLFKSGAEEHKRDNIERILRDFPER--KFILI 70 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHH-----hcCCCCCceEcccCCcc---ccccccCCchhHHHHHHHHHHHHCCCC--cEEEE
Confidence 589999999999999999996 67899999999876311 222222233369999999999999975 89999
Q ss_pred cCCCchhHHhHhhc-CCCCCcEEEE
Q 001520 978 FGNRDTDEISYLKV-GIPRGKIFII 1001 (1061)
Q Consensus 978 FGNR~TDv~AYraV-GIP~sRIFiI 1001 (1061)
.+|.+.|+++|.++ ---++||-.|
T Consensus 71 GDsgq~DpeiY~~ia~~~P~~i~ai 95 (100)
T PF09949_consen 71 GDSGQHDPEIYAEIARRFPGRILAI 95 (100)
T ss_pred eeCCCcCHHHHHHHHHHCCCCEEEE
Confidence 99999999999985 4445665443
No 9
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.67 E-value=1.2e-07 Score=83.39 Aligned_cols=128 Identities=19% Similarity=0.085 Sum_probs=78.8
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
++|||+||||+..+...+. .......+|+.+++..++++||+++.+|+|+ ...++.|+..+ +...+...++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~~~---~~~~~~~~i~ 71 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLEEL---GLDDYFDPVI 71 (139)
T ss_pred CeEEccCCceEccCccccc---cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHHHc---CCchhhhhee
Confidence 4899999999997654332 3345668999999999999999999999998 44555566421 1111323333
Q ss_pred cCCCCCC-------ccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 934 ISPDGLF-------PSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 934 LSPdsLf-------~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
.+.+... ......++..+|...+...+.+.... .....+ .+|++.+|+.+.+.+|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~igD~~~d~~~~~~~g~~ 135 (139)
T cd01427 72 TSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV---DPEEVL-MVGDSLNDIEMAKAAGGL 135 (139)
T ss_pred ccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCC---ChhhEE-EeCCCHHHHHHHHHcCCc
Confidence 3222111 00111223335655454443333332 122333 799999999999999886
No 10
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.58 E-value=3.8e-07 Score=96.36 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCCcEEEEecCCccccccc------cc-cccc--------ccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDV------LG-QFMP--------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTR 914 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDv------lG-hIlP--------~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR 914 (1061)
....+||+|||.|+..+-- .| ..+. ..|+..+-||+.+||++++++|++|+|||+|+..+...|.
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~ 154 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATL 154 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 3456799999999985431 11 1111 2366668999999999999999999999999999999999
Q ss_pred HHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccC-c-hHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc
Q 001520 915 RFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRA-P-HEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV 991 (1061)
Q Consensus 915 ~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~Kr-P-eeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV 991 (1061)
+||. ..++|. .-|+|.+ .-+.+ . -+||.++.+.|..- +--+.+-+|+..+|. .
T Consensus 155 ~nL~-----~~G~~~~~~LiLR~----------~~d~~~~~~~yKs~~R~~l~~~----GYrIv~~iGDq~sDl-----~ 210 (229)
T TIGR01675 155 DNLI-----NAGFTGWKHLILRG----------LEDSNKTVVTYKSEVRKSLMEE----GYRIWGNIGDQWSDL-----L 210 (229)
T ss_pred HHHH-----HcCCCCcCeeeecC----------CCCCCchHhHHHHHHHHHHHhC----CceEEEEECCChHHh-----c
Confidence 9996 456773 3344433 11222 2 37899998887753 345678999999998 3
Q ss_pred CCCCC-cEEEE
Q 001520 992 GIPRG-KIFII 1001 (1061)
Q Consensus 992 GIP~s-RIFiI 1001 (1061)
|-+.+ |+|-.
T Consensus 211 G~~~~~RtFKL 221 (229)
T TIGR01675 211 GSPPGRRTFKL 221 (229)
T ss_pred CCCccCceeeC
Confidence 55665 88853
No 11
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.42 E-value=9.8e-07 Score=85.78 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=77.1
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHH------------HHHHHHHhc
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAY------------HTRRFLFTL 920 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~------------~TR~yL~~i 920 (1061)
|+|++||||||+..+ .| ++. .+-.++.+.+..++++++|+.|+++|||+..... .|.+||.
T Consensus 2 K~i~~DiDGTL~~~~-~~---~y~-~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~-- 74 (126)
T TIGR01689 2 KRLVMDLDNTITLTE-NG---DYA-NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN-- 74 (126)
T ss_pred CEEEEeCCCCcccCC-CC---ccc-ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH--
Confidence 789999999998643 11 111 1336789999999999999999999999998877 9999996
Q ss_pred ccCCcCCCCCceecCCCC-CCccchhhhhccCchHHHHHHHHHHHhhCCC
Q 001520 921 KQDGKALPDGPVVISPDG-LFPSLFREVIRRAPHEFKIACLEDIKALFPS 969 (1061)
Q Consensus 921 ~Q~g~~LP~GPVLLSPds-Lf~AL~REVI~KrPeeFKIacL~dI~~LFP~ 969 (1061)
.+++|--.|++.... ....|++.=-.=||++|..--...|+.|...
T Consensus 75 ---k~~ipYd~l~~~kp~~~~~~~~~dD~~ir~~~~~~~~~~~~~~~~~~ 121 (126)
T TIGR01689 75 ---QHNVPYDEIYVGKPWCGHDGFYVDDRAIRPSEFSSLTYDEINTLTKI 121 (126)
T ss_pred ---HcCCCCceEEeCCCcCCCCCceecchhhCHHHHHhcCHHHHHHHHhh
Confidence 688997666665421 1112333322227889987778888887643
No 12
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.40 E-value=1.3e-06 Score=94.69 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=87.0
Q ss_pred CCcEEEEecCCccccc-cccc-ccc---c-----------ccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHH
Q 001520 851 NTRIVISDVDGTITKS-DVLG-QFM---P-----------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTR 914 (1061)
Q Consensus 851 ~dKIVISDIDGTITKS-DvlG-hIl---P-----------~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR 914 (1061)
+.-+||+|||+|+..+ .-.+ |.. + ..++..+-||+.+||+.++++|++|+|||+|+..+...|.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 4468999999999821 1111 111 1 1234445899999999999999999999999999999999
Q ss_pred HHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccC--c-hHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhh
Q 001520 915 RFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRA--P-HEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLK 990 (1061)
Q Consensus 915 ~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~Kr--P-eeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYra 990 (1061)
+||. ..++|. --|+|.+ .-+.+ . -.||.+..+.+..- +--+.+.+|+.-+|.
T Consensus 180 ~NL~-----kaGy~~~~~LiLR~----------~~D~~~~~av~yKs~~R~~li~e----GYrIv~~iGDq~sDl----- 235 (275)
T TIGR01680 180 ANLK-----KAGYHTWEKLILKD----------PQDNSAENAVEYKTAARAKLIQE----GYNIVGIIGDQWNDL----- 235 (275)
T ss_pred HHHH-----HcCCCCcceeeecC----------CCCCccchhHHHHHHHHHHHHHc----CceEEEEECCCHHhc-----
Confidence 9996 456763 2244432 21211 2 27898887776653 345677999999998
Q ss_pred cCCCC--CcEEE
Q 001520 991 VGIPR--GKIFI 1000 (1061)
Q Consensus 991 VGIP~--sRIFi 1000 (1061)
.|-+. .|.|=
T Consensus 236 ~G~~~g~~RtFK 247 (275)
T TIGR01680 236 KGEHRGAIRSFK 247 (275)
T ss_pred cCCCccCcceec
Confidence 45554 47774
No 13
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.35 E-value=9.2e-07 Score=93.46 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=80.7
Q ss_pred cEEEEecCCccccc-cc--cc-cc-cc----cc------------CCCC--ChhhHHHHHHHHHHCCCeEEEEccchhhH
Q 001520 853 RIVISDVDGTITKS-DV--LG-QF-MP----LV------------GVDW--SQTGVAHLFSAIKENGYQLLFLSARAIVQ 909 (1061)
Q Consensus 853 KIVISDIDGTITKS-Dv--lG-hI-lP----~L------------GKDW--TH~GVAkLYskI~~NGYkILYLSARpIgq 909 (1061)
..|++||||||+.| .. .| +. .| ++ .... +.+|+.+|++.++++|++|+|+|+|+-..
T Consensus 64 ~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k 143 (237)
T PRK11009 64 MAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATK 143 (237)
T ss_pred cEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 37999999999974 31 22 11 11 10 1112 46779999999999999999999998777
Q ss_pred HHHHHHHHHhcccCCcCCCCC---ceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHH
Q 001520 910 AYHTRRFLFTLKQDGKALPDG---PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEI 986 (1061)
Q Consensus 910 A~~TR~yL~~i~Q~g~~LP~G---PVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~ 986 (1061)
.+.|..+|. +..+||.- ++++.-+. ..+|+ |..++++ + ..-+| +|++.+|+.
T Consensus 144 ~~~t~~~Ll----k~~gip~~~~f~vil~gd~----------~~K~~--K~~~l~~---~----~i~I~--IGDs~~Di~ 198 (237)
T PRK11009 144 TETVSKTLA----DDFHIPADNMNPVIFAGDK----------PGQYT--KTQWLKK---K----NIRIF--YGDSDNDIT 198 (237)
T ss_pred cHHHHHHHH----HHcCCCcccceeEEEcCCC----------CCCCC--HHHHHHh---c----CCeEE--EcCCHHHHH
Confidence 777777875 24678733 23332211 11233 3344432 2 12344 999999999
Q ss_pred hHhhcCCCCCcEEE
Q 001520 987 SYLKVGIPRGKIFI 1000 (1061)
Q Consensus 987 AYraVGIP~sRIFi 1000 (1061)
+-+++||..-+++-
T Consensus 199 aA~~AGi~~I~v~~ 212 (237)
T PRK11009 199 AAREAGARGIRILR 212 (237)
T ss_pred HHHHcCCcEEEEec
Confidence 99999999877743
No 14
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.26 E-value=2.9e-07 Score=96.14 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=90.5
Q ss_pred CCCcEEEEecCCcccccc-ccc-cc------cc-------ccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSD-VLG-QF------MP-------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTR 914 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSD-vlG-hI------lP-------~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR 914 (1061)
....+||+|||+|+..+- -.+ ++ .+ .-|++.+-||+.+||+.++++|.+|+|||+|+..+...|.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATE 149 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 456789999999988321 101 11 11 2356667899999999999999999999999999999999
Q ss_pred HHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 915 RFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 915 ~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
.+|... ++|. -.++|.+..-. -.+.-..||......|..- +.-+.+-||+..+|....+..|.
T Consensus 150 ~nL~~~-----G~~~~~~l~lr~~~~~-------~~~~~~~yK~~~r~~i~~~----Gy~Ii~~iGD~~~D~~~~~~~~~ 213 (229)
T PF03767_consen 150 KNLKKA-----GFPGWDHLILRPDKDP-------SKKSAVEYKSERRKEIEKK----GYRIIANIGDQLSDFSGAKTAGA 213 (229)
T ss_dssp HHHHHH-----TTSTBSCGEEEEESST-------SS------SHHHHHHHHHT----TEEEEEEEESSGGGCHCTHHHHH
T ss_pred HHHHHc-----CCCccchhcccccccc-------ccccccccchHHHHHHHHc----CCcEEEEeCCCHHHhhccccccc
Confidence 999733 3443 33333332210 0112237899999998876 23567789999999998554444
Q ss_pred CCCcEEE
Q 001520 994 PRGKIFI 1000 (1061)
Q Consensus 994 P~sRIFi 1000 (1061)
...|.|+
T Consensus 214 ~~~r~f~ 220 (229)
T PF03767_consen 214 RAERWFK 220 (229)
T ss_dssp HHTTEEE
T ss_pred ccceEEE
Confidence 3466665
No 15
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.10 E-value=1e-05 Score=87.07 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCccccccc-cc-cc---ccccCCCC----------ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDV-LG-QF---MPLVGVDW----------SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTR 914 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDv-lG-hI---lP~LGKDW----------TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR 914 (1061)
....+||+|||+|+..+.- .| |+ .|.=.++| +.||+.++++.++++|++++|+|+|+..+...|.
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~ 152 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATL 152 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHH
Confidence 3567999999999986541 11 11 22212234 5799999999999999999999999999999999
Q ss_pred HHHHhcccCCcCCCC---CceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhh
Q 001520 915 RFLFTLKQDGKALPD---GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLK 990 (1061)
Q Consensus 915 ~yL~~i~Q~g~~LP~---GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYra 990 (1061)
.+|. ..+||. -+|++.++. ..|-..+..|..- + .+++-+|++..|......
T Consensus 153 ~~Lk-----k~Gi~~~~~d~lllr~~~---------------~~K~~rr~~I~~~----y-~Ivl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 153 KNLK-----RFGFPQADEEHLLLKKDK---------------SSKESRRQKVQKD----Y-EIVLLFGDNLLDFDDFFY 206 (266)
T ss_pred HHHH-----HcCcCCCCcceEEeCCCC---------------CCcHHHHHHHHhc----C-CEEEEECCCHHHhhhhhc
Confidence 9996 467764 355554321 1244555555542 3 346689999999977544
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.93 E-value=5.3e-05 Score=70.66 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=71.4
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhH-----HHHHHHHHHhcccCCcCC
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQ-----AYHTRRFLFTLKQDGKAL 927 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgq-----A~~TR~yL~~i~Q~g~~L 927 (1061)
|++++|+||||+.+ .+... ..+.-...+||.++...+++.||++..+|.++... ...++.+|. ..++
T Consensus 1 k~~~~D~dgtL~~~--~~~~~-~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~-----~~~l 72 (132)
T TIGR01662 1 KGVVLDLDGTLTDD--VPYVD-DEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLE-----ELGV 72 (132)
T ss_pred CEEEEeCCCceecC--CCCCC-CHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHH-----HCCC
Confidence 68999999999942 11111 11222347999999999999999999999997433 344555554 2344
Q ss_pred CCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCC-CchhHHhHhhcCCCC
Q 001520 928 PDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGN-RDTDEISYLKVGIPR 995 (1061)
Q Consensus 928 P~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGN-R~TDv~AYraVGIP~ 995 (1061)
+.=.+..+ . ....++|+.|+..+ +.+.. +++ ..-+| +|+ ..+|+.+-+++|+..
T Consensus 73 ~~~~~~~~------~---~~~KP~~~~~~~~~-~~~~~-~~~-~~~v~--IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 73 PIDVLYAC------P---HCRKPKPGMFLEAL-KRFNE-IDP-EESVY--VGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred CEEEEEEC------C---CCCCCChHHHHHHH-HHcCC-CCh-hheEE--EcCCCcccHHHHHHCCCeE
Confidence 31011111 1 11233444554322 22111 222 23444 788 699999999999864
No 17
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.92 E-value=5.8e-05 Score=80.02 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=74.8
Q ss_pred cEEEEecCCccccccc---cccc--cc-----ccCCC-C----------Ch--hhHHHHHHHHHHCCCeEEEEccchhh-
Q 001520 853 RIVISDVDGTITKSDV---LGQF--MP-----LVGVD-W----------SQ--TGVAHLFSAIKENGYQLLFLSARAIV- 908 (1061)
Q Consensus 853 KIVISDIDGTITKSDv---lGhI--lP-----~LGKD-W----------TH--~GVAkLYskI~~NGYkILYLSARpIg- 908 (1061)
..|||||||||+.|.. .|.- .+ +.|.+ | +. +++.+|+..++++|+++.|+|+|...
T Consensus 64 ~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k 143 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGK 143 (237)
T ss_pred eEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3799999999999987 5532 11 11222 1 23 44999999999999999999999443
Q ss_pred HHHHHHHHHHhcccCCcCCCCC-ceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHh
Q 001520 909 QAYHTRRFLFTLKQDGKALPDG-PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEIS 987 (1061)
Q Consensus 909 qA~~TR~yL~~i~Q~g~~LP~G-PVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~A 987 (1061)
-...++..++ ..+||.- ++++..+.. ..++|+ |..++++ . ...+ -||++.+|+.+
T Consensus 144 ~~~~a~~ll~-----~lGi~~~f~~i~~~d~~--------~~~Kp~--~~~~l~~---~----~i~i--~vGDs~~DI~a 199 (237)
T TIGR01672 144 TDTVSKTLAK-----NFHIPAMNPVIFAGDKP--------GQYQYT--KTQWIQD---K----NIRI--HYGDSDNDITA 199 (237)
T ss_pred CHHHHHHHHH-----HhCCchheeEEECCCCC--------CCCCCC--HHHHHHh---C----CCeE--EEeCCHHHHHH
Confidence 1223333332 3445531 333332211 113455 3333432 1 1123 49999999999
Q ss_pred HhhcCCCCCcE
Q 001520 988 YLKVGIPRGKI 998 (1061)
Q Consensus 988 YraVGIP~sRI 998 (1061)
-+++||..-++
T Consensus 200 Ak~AGi~~I~V 210 (237)
T TIGR01672 200 AKEAGARGIRI 210 (237)
T ss_pred HHHCCCCEEEE
Confidence 99999987666
No 18
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.75 E-value=0.00017 Score=70.35 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecC-------CCCCCccchhhhhccCchH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVIS-------PDGLFPSLFREVIRRAPHE 954 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLS-------PdsLf~AL~REVI~KrPee 954 (1061)
.+|+.++...++++||++..+|+........+-+.+. +.. +- +-.++. |+... . .. ++
T Consensus 82 ~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g-~~~----~~-~~~~~~~~~g~~~p~~~~---~---~~--~~- 146 (201)
T TIGR01491 82 RDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN-PDY----VY-SNELVFDEKGFIQPDGIV---R---VT--FD- 146 (201)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC-CCe----EE-EEEEEEcCCCeEecceee---E---Ec--cc-
Confidence 5788888999999999999999987555544433331 100 00 000111 11100 0 00 01
Q ss_pred HHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceee
Q 001520 955 FKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVV 1009 (1061)
Q Consensus 955 FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~ 1009 (1061)
-|.+.++.++..+.......+ .+|++.+|+.+-+.+|+ -|.+|+.+.+..
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i-~iGDs~~D~~~a~~ag~----~~a~~~~~~~~~ 196 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETV-AVGDSKNDLPMFEVADI----SISLGDEGHADY 196 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEE-EEcCCHhHHHHHHhcCC----eEEECCCccchh
Confidence 144455555444322111222 58999999999999998 479999998853
No 19
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.74 E-value=8.2e-05 Score=74.41 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecC----CCCCCcc-chhhhhc--cCch
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVIS----PDGLFPS-LFREVIR--RAPH 953 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLS----PdsLf~A-L~REVI~--KrPe 953 (1061)
..+|+.++++.++++||++.-+|+..... .+.+++ ..+++. ++-+ .+..+.. ....... .+|.
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~IvS~~~~~~---~~~~l~-----~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 155 (219)
T TIGR00338 86 LTEGAEELVKTLKEKGYKVAVISGGFDLF---AEHVKD-----KLGLDA--AFANRLEVEDGKLTGLVEGPIVDASYKGK 155 (219)
T ss_pred cCCCHHHHHHHHHHCCCEEEEECCCcHHH---HHHHHH-----HcCCCc--eEeeEEEEECCEEEEEecCcccCCcccHH
Confidence 36788899999999999999999965433 333342 122332 1111 0111100 0111111 1344
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCce
Q 001520 954 EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEV 1007 (1061)
Q Consensus 954 eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel 1007 (1061)
.|+ .+...+.-...-.+ .+|+..+|+.+.+++|++ +.+|+.-.+
T Consensus 156 ~~~-----~~~~~~~~~~~~~i-~iGDs~~Di~aa~~ag~~----i~~~~~~~~ 199 (219)
T TIGR00338 156 TLL-----ILLRKEGISPENTV-AVGDGANDLSMIKAAGLG----IAFNAKPKL 199 (219)
T ss_pred HHH-----HHHHHcCCCHHHEE-EEECCHHHHHHHHhCCCe----EEeCCCHHH
Confidence 343 33333221111233 488999999999999997 356765433
No 20
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.55 E-value=0.00045 Score=68.99 Aligned_cols=129 Identities=16% Similarity=0.338 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCC--hhhHHHHHHHHHHCCCeEEEEccchhh---------HHHHHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSARAIV---------QAYHTRRFLF 918 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWT--H~GVAkLYskI~~NGYkILYLSARpIg---------qA~~TR~yL~ 918 (1061)
...|++++|+||||+..+- ++..+.--.+|. .+||.+++..++++||++.-+|+.+.. ....++..|+
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~ 89 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRS-GKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLE 89 (166)
T ss_pred CcCcEEEEeCCCceEecCC-CCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHH
Confidence 3579999999999998542 223444445884 699999999999999999999976532 2234455664
Q ss_pred hcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCc--------hhHHhHhh
Q 001520 919 TLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRD--------TDEISYLK 990 (1061)
Q Consensus 919 ~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~--------TDv~AYra 990 (1061)
..+++.- .+...+.. ..| .++|+.|+.++ +.+...+.+ ..-+| .|++. +|+.+=++
T Consensus 90 -----~~gl~~~-~ii~~~~~---~~~---KP~p~~~~~~~-~~~~~~~~~-~~~v~--VGD~~~~~~~~~~~Di~aA~~ 153 (166)
T TIGR01664 90 -----KLKVPIQ-VLAATHAG---LYR---KPMTGMWEYLQ-SQYNSPIKM-TRSFY--VGDAAGRKLDFSDADIKFAKN 153 (166)
T ss_pred -----HcCCCEE-EEEecCCC---CCC---CCccHHHHHHH-HHcCCCCCc-hhcEE--EECCCCCCCCCchhHHHHHHH
Confidence 3455531 22222110 111 22344555332 222100112 23566 66775 69999999
Q ss_pred cCCCC
Q 001520 991 VGIPR 995 (1061)
Q Consensus 991 VGIP~ 995 (1061)
+||+.
T Consensus 154 aGi~~ 158 (166)
T TIGR01664 154 LGLEF 158 (166)
T ss_pred CCCCc
Confidence 99986
No 21
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.42 E-value=0.0002 Score=70.07 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=69.5
Q ss_pred cEEEEecCCcccccccc-cccccccCCCC-ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC
Q 001520 853 RIVISDVDGTITKSDVL-GQFMPLVGVDW-SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG 930 (1061)
Q Consensus 853 KIVISDIDGTITKSDvl-GhIlP~LGKDW-TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G 930 (1061)
|+|++||||||+...+. ..-...+++ | ..++. ..+.++++||++.-+|+++-..+ +.+|. ..+++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~-~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~---~~~l~-----~~gi~~- 69 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKA-FNVRDGY--GIRCALKSGIEVAIITGRKAKLV---EDRCK-----TLGITH- 69 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEE-EechhHH--HHHHHHHCCCEEEEEECCCCHHH---HHHHH-----HcCCCE-
Confidence 78999999999963321 000112232 3 22343 68889999999999999987644 34443 233431
Q ss_pred ceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCce
Q 001520 931 PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEV 1007 (1061)
Q Consensus 931 PVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel 1007 (1061)
+ |.. ...+|+ .+..++..+.-..... ..+|++.+|+.+-+.+|++ +.+-|.+..+
T Consensus 70 -~-------~~~-----~~~k~~-----~~~~~~~~~~~~~~~~-~~vGDs~~D~~~~~~ag~~---~~v~~~~~~~ 124 (154)
T TIGR01670 70 -L-------YQG-----QSNKLI-----AFSDILEKLALAPENV-AYIGDDLIDWPVMEKVGLS---VAVADAHPLL 124 (154)
T ss_pred -E-------Eec-----ccchHH-----HHHHHHHHcCCCHHHE-EEECCCHHHHHHHHHCCCe---EecCCcCHHH
Confidence 1 111 122233 3333333322111122 3599999999999999996 5444555444
No 22
>PRK10976 putative hydrolase; Provisional
Probab=97.42 E-value=0.00061 Score=70.48 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=48.0
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCce
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPV 932 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPV 932 (1061)
|+|++|+||||..++ +.+. +...+..++++++|++|+..|+|++..+ +.++..+ ++ ++|+
T Consensus 3 kli~~DlDGTLl~~~--~~is---------~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~~~~l-----~~-~~~~ 62 (266)
T PRK10976 3 QVVASDLDGTLLSPD--HTLS---------PYAKETLKLLTARGIHFVFATGRHHVDV---GQIRDNL-----EI-KSYM 62 (266)
T ss_pred eEEEEeCCCCCcCCC--CcCC---------HHHHHHHHHHHHCCCEEEEEcCCChHHH---HHHHHhc-----CC-CCeE
Confidence 789999999999865 2222 5567888999999999999999998744 4455422 23 3666
Q ss_pred ecCCCC
Q 001520 933 VISPDG 938 (1061)
Q Consensus 933 LLSPds 938 (1061)
++....
T Consensus 63 I~~NGa 68 (266)
T PRK10976 63 ITSNGA 68 (266)
T ss_pred EEcCCc
Confidence 665544
No 23
>PLN02954 phosphoserine phosphatase
Probab=97.41 E-value=0.00037 Score=69.97 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee-----cCCCCCCccc-hhhhhccCchHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV-----ISPDGLFPSL-FREVIRRAPHEF 955 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL-----LSPdsLf~AL-~REVI~KrPeeF 955 (1061)
.||+.++++.++++|+++.-+|+..-..+....+.+ +++.=+++ +..++.+..+ ..+.. ....-
T Consensus 86 ~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~--------gi~~~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~ 155 (224)
T PLN02954 86 SPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL--------GIPPENIFANQILFGDSGEYAGFDENEPT--SRSGG 155 (224)
T ss_pred CccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh--------CCChhhEEEeEEEEcCCCcEECccCCCcc--cCCcc
Confidence 589999999999999999999998765554443333 33321122 2222211111 00000 00122
Q ss_pred HHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 956 KIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 956 KIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
|-++++.++...+. ...+ .||++.+|+.|.++.|+.
T Consensus 156 K~~~i~~~~~~~~~-~~~i--~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 156 KAEAVQHIKKKHGY-KTMV--MIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHHHHHHHHcCC-CceE--EEeCCHHHHHhhhcCCCC
Confidence 55666666665432 1223 599999999996666654
No 24
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.40 E-value=0.00047 Score=66.52 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=70.8
Q ss_pred cEEEEecCCcccccccccccccccCCCC-ChhhHHHHHHHHHHCCCeEEEEccchhh------HH------HHHHHHHHh
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDW-SQTGVAHLFSAIKENGYQLLFLSARAIV------QA------YHTRRFLFT 919 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDW-TH~GVAkLYskI~~NGYkILYLSARpIg------qA------~~TR~yL~~ 919 (1061)
+++|+|+||||+...... .. ....+| ..+|+.+++..++++||++.-+|+.+.. .. ..++..|+
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~-~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~- 77 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YP-RSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLR- 77 (147)
T ss_pred CeEEEeCCCceeccCCcc-cC-CCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHH-
Confidence 589999999999744321 11 112233 3799999999999999999999997631 11 33444443
Q ss_pred cccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCC-CCCEEEecCCCchhHHhHhhcCCC
Q 001520 920 LKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSD-CNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 920 i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~-~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
..+++.=..+... .+.+-....-.++|+.|... +..++.. ..-+| +|++..|+.+=+++||.
T Consensus 78 ----~~~l~~~~~~~~~--~~~~~~~~~~KP~~~~~~~~-----~~~~~~~~~e~i~--IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 78 ----QLGVAVDGVLFCP--HHPADNCSCRKPKPGLILEA-----LKRLGVDASRSLV--VGDRLRDLQAARNAGLA 140 (147)
T ss_pred ----hCCCceeEEEECC--CCCCCCCCCCCCCHHHHHHH-----HHHcCCChHHEEE--EcCCHHHHHHHHHCCCC
Confidence 2344310111111 00000000012333344333 3333322 12344 89999999999999995
No 25
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.35 E-value=0.00092 Score=66.18 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=74.4
Q ss_pred cEEEEecCCcccccccccccccccC--CCCC-hhhHHHHHHHHHHCCCeEEEEccchh--------hHHHHHHHHHHhcc
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVG--VDWS-QTGVAHLFSAIKENGYQLLFLSARAI--------VQAYHTRRFLFTLK 921 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LG--KDWT-H~GVAkLYskI~~NGYkILYLSARpI--------gqA~~TR~yL~~i~ 921 (1061)
|++.+|.||||++. + +++. .+|. -|||.++...++++||++.-+|+-+- ......+.|+.++.
T Consensus 2 ~~~~~D~Dgtl~~~----~--~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l 75 (176)
T TIGR00213 2 KAIFLDRDGTINID----H--GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL 75 (176)
T ss_pred CEEEEeCCCCEeCC----C--CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH
Confidence 78999999999952 1 2222 2443 68999999999999999999998652 22334456665442
Q ss_pred cCCcCCCCCceecCCCCCCc--cchhhhhccCc--hHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 922 QDGKALPDGPVVISPDGLFP--SLFREVIRRAP--HEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 922 Q~g~~LP~GPVLLSPdsLf~--AL~REVI~KrP--eeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ ..+++---++.++..... -+..+...++| +.|+.++ +.+ .+ .+ ..-+ .+|++.+|+.+=+++|++.
T Consensus 76 ~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~-~~~-~~-~~-~~~v--~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 76 A-ERDVDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQAR-KEL-HI-DM-AQSY--MVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred H-HcCCCccEEEECCCCCcccccccCCCCCCCCCHHHHHHHH-HHc-Cc-Ch-hhEE--EEcCCHHHHHHHHHCCCcE
Confidence 2 122331122222211000 00011222344 4565443 221 11 11 1233 4899999999999999974
No 26
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.27 E-value=0.0017 Score=64.23 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=72.4
Q ss_pred CcEEEEecCCcccccccccccccccCCCC-ChhhHHHHHHHHHHCCCeEEEEccchh--------hHHHHHHHHHHhccc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDW-SQTGVAHLFSAIKENGYQLLFLSARAI--------VQAYHTRRFLFTLKQ 922 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDW-TH~GVAkLYskI~~NGYkILYLSARpI--------gqA~~TR~yL~~i~Q 922 (1061)
-|++++|-||||... +..+...-..| ..+||.++.+.++++||++.-+|..+- .+....++|+..+-+
T Consensus 3 ~~~~~~d~~~t~~~~---~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (181)
T PRK08942 3 MKAIFLDRDGVINVD---SDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLA 79 (181)
T ss_pred ccEEEEECCCCcccC---CccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH
Confidence 489999999999763 21111111133 389999999999999999999998752 122223444443222
Q ss_pred CCcCCCCCceecCCCCCCccchhhhhccCch--HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 923 DGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 923 ~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
..+++--.++.+.+.- ..++..++|+ .|...+ +.+ .+ ++. .-+ .+|++.+|+.+-+++|++
T Consensus 80 -~~g~~f~~i~~~~~~~----~~~~~~~KP~p~~~~~~~-~~l-~~-~~~-~~~--~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 80 -DRGGRLDGIYYCPHHP----EDGCDCRKPKPGMLLSIA-ERL-NI-DLA-GSP--MVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred -HcCCccceEEECCCCC----CCCCcCCCCCHHHHHHHH-HHc-CC-Chh-hEE--EEeCCHHHHHHHHHCCCe
Confidence 1233212233332110 0112223454 454433 222 22 221 223 489999999999999993
No 27
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.24 E-value=0.00082 Score=66.52 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC---CceecCCCCCCccchhhhhccCchHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD---GPVVISPDGLFPSLFREVIRRAPHEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~---GPVLLSPdsLf~AL~REVI~KrPeeFKIa 958 (1061)
.||+.++...++++ |++.-+|+.....+. .+|. ..+++. -.+....+..+ .+.. ...|+ -|..
T Consensus 70 ~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~---~~l~-----~~gl~~~f~~~~~~~~~~~i---~~~~-~~~p~-~k~~ 135 (205)
T PRK13582 70 LPGAVEFLDWLRER-FQVVILSDTFYEFAG---PLMR-----QLGWPTLFCHSLEVDEDGMI---TGYD-LRQPD-GKRQ 135 (205)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCcHHHHH---HHHH-----HcCCchhhcceEEECCCCeE---ECcc-ccccc-hHHH
Confidence 59999999999999 999999987766444 4543 223331 11222222211 1110 11232 3666
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+++.+... +. . ...+|++.+|+.+.+++|+.
T Consensus 136 ~l~~~~~~-~~--~--~v~iGDs~~D~~~~~aa~~~ 166 (205)
T PRK13582 136 AVKALKSL-GY--R--VIAAGDSYNDTTMLGEADAG 166 (205)
T ss_pred HHHHHHHh-CC--e--EEEEeCCHHHHHHHHhCCCC
Confidence 66666543 21 2 23699999999999999974
No 28
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.18 E-value=0.00091 Score=67.23 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCcEEEEecCCcccccccccccccc--cCCCCCh---hhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPL--VGVDWSQ---TGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK 925 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~--LGKDWTH---~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~ 925 (1061)
.-|+|++|||||||...+. ..+. .-..|.. .++ +.++++|+++..+|+|+...+ +.+++ ..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~--~~~~~~~~~~~~~~d~~~i----~~L~~~Gi~v~I~T~~~~~~v---~~~l~-----~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIY--MGNNGEELKAFNVRDGYGI----RCLLTSGIEVAIITGRKSKLV---EDRMT-----TL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEE--EcCCCCEEEEEeccchHHH----HHHHHCCCEEEEEeCCCcHHH---HHHHH-----Hc
Confidence 4688999999999986431 1110 1112222 344 344579999999999976544 44553 12
Q ss_pred CCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 926 ALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 926 ~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+++. +|.+ ... |.+.|..++..+.-...- .+.+|+..+|+.+-+.+|++
T Consensus 86 gl~~---------~f~g-----~~~-----k~~~l~~~~~~~gl~~~e-v~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 86 GITH---------LYQG-----QSN-----KLIAFSDLLEKLAIAPEQ-VAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred CCce---------eecC-----CCc-----HHHHHHHHHHHhCCCHHH-EEEECCCHHHHHHHHHCCCe
Confidence 2321 1111 011 445555555544322122 23599999999999999986
No 29
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.09 E-value=0.0024 Score=64.37 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=47.1
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCce
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPV 932 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPV 932 (1061)
|+|++|+||||..++- .+ .+...+..++++++|.+|+.+|+|+...+.. ++. ..+++ +|+
T Consensus 4 kli~~DlDGTLl~~~~--~i---------~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~---~~~-----~l~~~-~~~ 63 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--RL---------SLKAVEAIRKAEKLGIPVILATGNVLCFARA---AAK-----LIGTS-GPV 63 (230)
T ss_pred eEEEEecCCCcCCCCC--cc---------CHHHHHHHHHHHHCCCEEEEEcCCchHHHHH---HHH-----HhCCC-CcE
Confidence 7899999999997542 11 2566778889999999999999999875543 332 12343 677
Q ss_pred ecCCCC
Q 001520 933 VISPDG 938 (1061)
Q Consensus 933 LLSPds 938 (1061)
++....
T Consensus 64 i~~nGa 69 (230)
T PRK01158 64 IAENGG 69 (230)
T ss_pred EEecCe
Confidence 665543
No 30
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.06 E-value=0.0021 Score=67.00 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=48.7
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCce
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPV 932 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPV 932 (1061)
|+|++|+||||..++- ++ .+-..+..++++++|++|+..|+|+... ++.+++.+ ++ .+|+
T Consensus 3 kli~~DlDGTLl~~~~--~i---------~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l-----~~-~~~~ 62 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--HL---------GEKTLSTLARLRERDITLTFATGRHVLE---MQHILGAL-----SL-DAYL 62 (272)
T ss_pred cEEEEeCCCcCcCCCC--cC---------CHHHHHHHHHHHHCCCEEEEECCCCHHH---HHHHHHHc-----CC-CCcE
Confidence 7899999999998642 22 2556788889999999999999999874 45566422 34 3576
Q ss_pred ecCCCCC
Q 001520 933 VISPDGL 939 (1061)
Q Consensus 933 LLSPdsL 939 (1061)
++....+
T Consensus 63 I~~NGa~ 69 (272)
T PRK15126 63 ITGNGTR 69 (272)
T ss_pred EecCCcE
Confidence 6655443
No 31
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=96.96 E-value=0.0029 Score=61.11 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC--Cceec-----CCCCCCccchhh--hhccC
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD--GPVVI-----SPDGLFPSLFRE--VIRRA 951 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~--GPVLL-----SPdsLf~AL~RE--VI~Kr 951 (1061)
..+|+.+++..++++||++..+|+............+ +++. -.++. .+++.+.....+ +....
T Consensus 73 l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~ 144 (188)
T TIGR01489 73 IDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI--------GEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSC 144 (188)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc--------CChhheeEEeccCceECCCCcEEEecCCCCccCcC
Confidence 3566777778888999999999987654333322221 1211 01222 222222111111 00011
Q ss_pred ch-HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 952 PH-EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 952 Pe-eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+. ..|.++++.++..+| ...+ .+|++.+|+.|=+++++-
T Consensus 145 ~~g~~K~~~~~~~~~~~~--~~~i--~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 145 PCGCCKGKVIHKLSEPKY--QHII--YIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CCCCCHHHHHHHHHhhcC--ceEE--EECCCcchhchHhcCCcc
Confidence 11 347777887776542 2234 479999999998887653
No 32
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.95 E-value=0.0041 Score=62.21 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred CcEEEEecCCcccccccccccccccCCC-CChhhHHHHHHHHHHCCCeEEEEccch--------h----hHHHHHHHHHH
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVD-WSQTGVAHLFSAIKENGYQLLFLSARA--------I----VQAYHTRRFLF 918 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKD-WTH~GVAkLYskI~~NGYkILYLSARp--------I----gqA~~TR~yL~ 918 (1061)
+|++.+|.||||+..- -+......-.+ +..+||.++...++++||++..+|..+ . .....++..|.
T Consensus 1 ~~~~~~d~dg~l~~~~-~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~ 79 (161)
T TIGR01261 1 QKILFIDRDGTLIEEP-PSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFR 79 (161)
T ss_pred CCEEEEeCCCCccccC-CCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH
Confidence 4899999999999832 12222222123 347999999999999999999999852 1 12334445553
Q ss_pred hcccCCcCCCCCceecCCCCCCccchhhhhccCch--HHHHHHHHHHHhhCCCC-CCCEEEecCCCchhHHhHhhcCCCC
Q 001520 919 TLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKALFPSD-CNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 919 ~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIacL~dI~~LFP~~-~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
..+++-=-++.+|...- -++..++|+ .|... ...+... ..-+| +|++.+|+.+=+++|+..
T Consensus 80 -----~~gl~fd~ii~~~~~~~----~~~~~~KP~~~~~~~~-----~~~~~~~~~e~l~--IGD~~~Di~~A~~aGi~~ 143 (161)
T TIGR01261 80 -----SQGIIFDDVLICPHFPD----DNCDCRKPKIKLLEPY-----LKKNLIDKARSYV--IGDRETDMQLAENLGIRG 143 (161)
T ss_pred -----HCCCceeEEEECCCCCC----CCCCCCCCCHHHHHHH-----HHHcCCCHHHeEE--EeCCHHHHHHHHHCCCeE
Confidence 34554111233331100 122233554 33322 2222211 12344 789999999999999974
No 33
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.91 E-value=0.0028 Score=65.69 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=49.5
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
-|+|++|+||||..++- .+ .+...+..++++++|++|+..|+|+... ++.+++.+ +...|.+|
T Consensus 3 ~kli~~DlDGTLl~~~~--~i---------~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l---~~~~~~~~ 65 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TI---------SPAVKQAIAAARAKGVNVVLTTGRPYAG---VHRYLKEL---HMEQPGDY 65 (270)
T ss_pred eEEEEEecCCcCcCCCC--cc---------CHHHHHHHHHHHHCCCEEEEecCCChHH---HHHHHHHh---CCCCCCCe
Confidence 37899999999998642 22 2556788999999999999999999874 45555422 22223356
Q ss_pred eecCCCCC
Q 001520 932 VVISPDGL 939 (1061)
Q Consensus 932 VLLSPdsL 939 (1061)
+++....+
T Consensus 66 ~I~~NGa~ 73 (270)
T PRK10513 66 CITNNGAL 73 (270)
T ss_pred EEEcCCeE
Confidence 66655443
No 34
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.91 E-value=0.0026 Score=64.18 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=39.8
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYH 912 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~ 912 (1061)
|+|++|+||||+.++- . -++...+..++++++|++|+.+|+|+......
T Consensus 2 k~v~~DlDGTLl~~~~--~---------i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~ 50 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR--M---------ISERAIEAIRKAEKKGIPVSLVTGNTVPFARA 50 (215)
T ss_pred cEEEEecCCCcCCCCc--c---------cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHH
Confidence 7899999999997542 1 24677888999999999999999998865443
No 35
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.89 E-value=0.0026 Score=64.77 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch--H----
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--E---- 954 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--e---- 954 (1061)
..||+.+++..++++|+++.-+|+..-. .++..|+ .. ++.-.++.+...+-. ..+...+|+ .
T Consensus 75 l~pG~~e~l~~l~~~g~~~~IvS~~~~~---~i~~il~-----~~-~~~~~i~~n~~~~~~---~~~~~~kp~p~~~~~~ 142 (219)
T PRK09552 75 IREGFHEFVQFVKENNIPFYVVSGGMDF---FVYPLLQ-----GL-IPKEQIYCNGSDFSG---EYITITWPHPCDEHCQ 142 (219)
T ss_pred cCcCHHHHHHHHHHcCCeEEEECCCcHH---HHHHHHH-----Hh-CCcCcEEEeEEEecC---CeeEEeccCCcccccc
Confidence 4789999999999999999999998643 4444553 12 333233322111000 011112232 1
Q ss_pred -----HHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 955 -----FKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 955 -----FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
-|..+++.+... + .+.+ .+|++.+|+.|=+++|+.
T Consensus 143 ~~~~~~K~~~l~~~~~~-~--~~~i--~iGDs~~Di~aa~~Ag~~ 182 (219)
T PRK09552 143 NHCGCCKPSLIRKLSDT-N--DFHI--VIGDSITDLEAAKQADKV 182 (219)
T ss_pred ccCCCchHHHHHHhccC-C--CCEE--EEeCCHHHHHHHHHCCcc
Confidence 277777766532 1 2333 589999999999999993
No 36
>PRK11590 hypothetical protein; Provisional
Probab=96.77 E-value=0.0043 Score=63.31 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=65.4
Q ss_pred hhhHHHHH-HHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc-eecCCCCCCccchhhhhccCchHHHHHH
Q 001520 882 QTGVAHLF-SAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP-VVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLY-skI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP-VLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
.|||.++. +.+++.||++.-+|+.+-..+...-..|. . ++ |. ++.+. +-.-+...+. .+.-+..+.
T Consensus 97 ~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~------~-~~-~~~~i~t~--l~~~~tg~~~--g~~c~g~~K 164 (211)
T PRK11590 97 FPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP------W-LP-RVNLIASQ--MQRRYGGWVL--TLRCLGHEK 164 (211)
T ss_pred CccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc------c-cc-cCceEEEE--EEEEEccEEC--CccCCChHH
Confidence 46666666 45677899999999998876665554442 1 00 11 22222 1001111221 233333333
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCcee
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~ 1008 (1061)
++.|+..++. ...-+.+||+..+|.-+...||-| |.|||...|.
T Consensus 165 ~~~l~~~~~~-~~~~~~aY~Ds~~D~pmL~~a~~~----~~vnp~~~l~ 208 (211)
T PRK11590 165 VAQLERKIGT-PLRLYSGYSDSKQDNPLLYFCQHR----WRVTPRGELQ 208 (211)
T ss_pred HHHHHHHhCC-CcceEEEecCCcccHHHHHhCCCC----EEECccHHhh
Confidence 3444455432 223445899999999999999977 7899988775
No 37
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.75 E-value=0.0032 Score=65.30 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=56.7
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
-|+|++|+||||+.++-. -++-..+..++++++|++|+..|+|++..+......| ++ .||
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l--------~~-~~~ 62 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL--------GL-DGP 62 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc--------CC-Ccc
Confidence 488999999999997642 3577888888999999999999999995544444444 23 337
Q ss_pred eecCCCCCCccchhhhhccCc
Q 001520 932 VVISPDGLFPSLFREVIRRAP 952 (1061)
Q Consensus 932 VLLSPdsLf~AL~REVI~KrP 952 (1061)
+++....+.... .|++..++
T Consensus 63 ~I~~NGa~i~~~-~~~i~~~~ 82 (264)
T COG0561 63 LITFNGALIYNG-GELLFQKP 82 (264)
T ss_pred EEEeCCeEEecC-CcEEeeec
Confidence 777766655333 44444433
No 38
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.74 E-value=0.0051 Score=63.36 Aligned_cols=69 Identities=23% Similarity=0.430 Sum_probs=49.8
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
-|++++||||||..++- ++ .+-..+..++++++|++|+..|+|+... ++.+++.+ ++ .+|
T Consensus 3 ~kli~~DlDGTLl~~~~--~i---------~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~~~~l-----~~-~~~ 62 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TI---------LPESLEALARAREAGYKVIIVTGRHHVA---IHPFYQAL-----AL-DTP 62 (272)
T ss_pred ccEEEEeCCCceECCCC--cc---------CHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHhc-----CC-CCC
Confidence 37899999999997642 22 2455678889999999999999999764 45566422 23 467
Q ss_pred eecCCCCCC
Q 001520 932 VVISPDGLF 940 (1061)
Q Consensus 932 VLLSPdsLf 940 (1061)
+++....+.
T Consensus 63 ~I~~NGa~i 71 (272)
T PRK10530 63 AICCNGTYL 71 (272)
T ss_pred EEEcCCcEE
Confidence 777665544
No 39
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.71 E-value=0.0032 Score=60.54 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC---CceecCCCCCCccchhhhhc-cCc-hHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD---GPVVISPDGLFPSLFREVIR-RAP-HEFK 956 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~---GPVLLSPdsLf~AL~REVI~-KrP-eeFK 956 (1061)
.+|+.+++..++++|+++..+|+..-. .++.++.. .+++. -++....++.+. ..... ..+ ..-|
T Consensus 75 ~~g~~~~l~~l~~~g~~~~ivS~~~~~---~i~~~~~~-----~g~~~~~~~~~~~~~~g~~~---g~~~~~~~~~~~~K 143 (177)
T TIGR01488 75 RPGARELISWLKERGIDTVIVSGGFDF---FVEPVAEK-----LGIDDVFANRLEFDDNGLLT---GPIEGQVNPEGECK 143 (177)
T ss_pred CcCHHHHHHHHHHCCCEEEEECCCcHH---HHHHHHHH-----cCCchheeeeEEECCCCEEe---CccCCcccCCcchH
Confidence 588999999999999999999997654 34444431 12221 011111121110 00111 112 2558
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV 991 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV 991 (1061)
...|+.++...+..... +..||+..+|+.+.+.|
T Consensus 144 ~~~l~~~~~~~~~~~~~-~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 144 GKVLKELLEESKITLKK-IIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHHHHHHhCCCHHH-EEEEeCCHHHHHHHhcC
Confidence 88888877654322112 34699999999987654
No 40
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.71 E-value=0.004 Score=61.26 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=47.2
Q ss_pred EEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceec
Q 001520 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVI 934 (1061)
Q Consensus 855 VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLL 934 (1061)
|++||||||..++- . -.+-..+.++.++++|++|+..|+|++..+..+...+ +++ .|+++
T Consensus 1 i~~DlDGTLl~~~~----------~-i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~--------~~~-~~~I~ 60 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG----------K-ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL--------GID-DYFIC 60 (254)
T ss_dssp EEEECCTTTCSTTS----------S-SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT--------THC-SEEEE
T ss_pred cEEEECCceecCCC----------e-eCHHHHHHHHhhcccceEEEEEccCcccccccccccc--------cch-hhhcc
Confidence 78999999988542 1 2377888999999999999999999988655544433 232 56666
Q ss_pred CCCCC
Q 001520 935 SPDGL 939 (1061)
Q Consensus 935 SPdsL 939 (1061)
....+
T Consensus 61 ~nGa~ 65 (254)
T PF08282_consen 61 SNGAL 65 (254)
T ss_dssp GGGTE
T ss_pred cccce
Confidence 55443
No 41
>PRK10444 UMP phosphatase; Provisional
Probab=96.60 E-value=0.0036 Score=66.35 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=51.8
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCce
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPV 932 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPV 932 (1061)
|.|++|+||||..++. ..||+.++.+.++++|.+|++||.|+..-.....+-|. .-|..+++.-+
T Consensus 2 ~~v~~DlDGtL~~~~~------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~---~~G~~~~~~~i 66 (248)
T PRK10444 2 KNVICDIDGVLMHDNV------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA---TAGVDVPDSVF 66 (248)
T ss_pred cEEEEeCCCceEeCCe------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH---HcCCCCCHhhE
Confidence 5799999999998642 25899999999999999999999998765555555553 33555566656
Q ss_pred ecC
Q 001520 933 VIS 935 (1061)
Q Consensus 933 LLS 935 (1061)
+++
T Consensus 67 ~ts 69 (248)
T PRK10444 67 YTS 69 (248)
T ss_pred ecH
Confidence 554
No 42
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.57 E-value=0.0045 Score=64.04 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=63.9
Q ss_pred hhhHHHHHH-HHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch---HHHH
Q 001520 882 QTGVAHLFS-AIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH---EFKI 957 (1061)
Q Consensus 882 H~GVAkLYs-kI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe---eFKI 957 (1061)
.||+.++.. .+++.|++++-+|+.+-.++...-..+..+ ... -+|.+.-.. .-...+. .+. +-|.
T Consensus 96 ~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~-----~~~--~~i~t~le~--~~gg~~~--g~~c~g~~Kv 164 (210)
T TIGR01545 96 FPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFI-----HRL--NLIASQIER--GNGGWVL--PLRCLGHEKV 164 (210)
T ss_pred CccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccc-----ccC--cEEEEEeEE--eCCceEc--CccCCChHHH
Confidence 466777664 566789999999999877666655443110 000 122111000 0001111 122 3355
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceee
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVV 1009 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~ 1009 (1061)
..|+ ..+..+ ...+.+||+..+|..+...||-| +.|||+..|++
T Consensus 165 ~rl~---~~~~~~-~~~~~aYsDS~~D~pmL~~a~~~----~~Vnp~~~L~~ 208 (210)
T TIGR01545 165 AQLE---QKIGSP-LKLYSGYSDSKQDNPLLAFCEHR----WRVSKRGELQQ 208 (210)
T ss_pred HHHH---HHhCCC-hhheEEecCCcccHHHHHhCCCc----EEECcchHhcc
Confidence 5444 444322 23345899999999999999977 79999998863
No 43
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.57 E-value=0.0053 Score=61.95 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=47.8
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
.|++|+||||+.++- .+ ..+ ..+..++++++|++|+.+|+|+......+.+-| +++..|++
T Consensus 1 ~i~~DlDGTLL~~~~--~~--------~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l--------~~~~~~~I 61 (221)
T TIGR02463 1 WVFSDLDGTLLDSHS--YD--------WQP-AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL--------GLTGDPYI 61 (221)
T ss_pred CEEEeCCCCCcCCCC--CC--------cHH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc--------CCCCCcEE
Confidence 379999999998652 11 123 568888899999999999999987655444443 24435777
Q ss_pred cCCCCCC
Q 001520 934 ISPDGLF 940 (1061)
Q Consensus 934 LSPdsLf 940 (1061)
+....+.
T Consensus 62 ~~NGa~i 68 (221)
T TIGR02463 62 AENGAAI 68 (221)
T ss_pred EeCCcEE
Confidence 7665543
No 44
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.56 E-value=0.0053 Score=67.88 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC---ceecCCCCCCccchhhhhccCchHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG---PVVISPDGLFPSLFREVIRRAPHEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G---PVLLSPdsLf~AL~REVI~KrPeeFKIa 958 (1061)
.||+.++++.++++||++.-+|+-....++..++-| ++... .+-+....+...+..++... .-|-+
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L--------gld~~~an~lei~dg~ltg~v~g~iv~~---k~K~~ 251 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL--------RLDAAVANELEIMDGKLTGNVLGDIVDA---QYKAD 251 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc--------CCCeEEEeEEEEECCEEEeEecCccCCc---ccHHH
Confidence 689999999999999999999998876655444433 22210 01111111111111111111 34777
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCcee
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~ 1008 (1061)
+|+.++..+.-.....+ +||+..+|..|-+.+|+.. ..|++=.|+
T Consensus 252 ~L~~la~~lgi~~~qtI-aVGDg~NDl~m~~~AGlgi----A~nAkp~Vk 296 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTV-AIGDGANDLPMIKAAGLGI----AYHAKPKVN 296 (322)
T ss_pred HHHHHHHHcCCChhhEE-EEECCHHHHHHHHHCCCeE----EeCCCHHHH
Confidence 88888776543222233 6999999999999999854 348887775
No 45
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.55 E-value=0.012 Score=61.84 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.|||.++...++++||++.-+|+.+-... +..|+... -..+..-.++.+. ... .-.+.|+.|..++ +
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~~---~~~l~~~~--l~~~~~d~i~~~~-~~~------~~KP~p~~~~~a~-~ 169 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREMM---DVVVPLAA--AQGYRPDHVVTTD-DVP------AGRPYPWMALKNA-I 169 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHHH---HHHHHHHh--hcCCCceEEEcCC-cCC------CCCCChHHHHHHH-H
Confidence 67888888999999999999998766543 33332111 1122212344432 211 0123445554333 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ .+-|+ ..-+ .+|++.+|+.+=+++|++.
T Consensus 170 ~l-~~~~~-~e~l--~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 170 EL-GVYDV-AACV--KVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred Hc-CCCCC-cceE--EEcCcHHHHHHHHHCCCEE
Confidence 11 11111 1233 4899999999999999963
No 46
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.53 E-value=0.0091 Score=70.31 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=46.3
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCC--hhhHHHHHHHHHHCCCeEEEEccchh
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSARAI 907 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWT--H~GVAkLYskI~~NGYkILYLSARpI 907 (1061)
...|++.||.||||.+... |..+|.--.||. .+||.++...|+++||+|+-+|.-+.
T Consensus 166 ~~~Kia~fD~DGTLi~t~s-g~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKS-GKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred ccCcEEEEECCCCccccCC-CccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 5569999999999997432 555555555774 89999999999999999999998644
No 47
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.52 E-value=0.023 Score=64.12 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=77.2
Q ss_pred CcEEEEecCCccccccccccccc-ccCCCCChhhHHHHHHHHHHCCCeEEEEccc-hhhHHH-------HHHHHHHhccc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMP-LVGVDWSQTGVAHLFSAIKENGYQLLFLSAR-AIVQAY-------HTRRFLFTLKQ 922 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP-~LGKDWTH~GVAkLYskI~~NGYkILYLSAR-pIgqA~-------~TR~yL~~i~Q 922 (1061)
.|++.+|.||||+..-. ++... .+.+--..|||.+++..++++||++.-+|.. .++... ..+.++..+-+
T Consensus 2 ~k~l~lDrDgtl~~~~~-~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 2 QKILFIDRDGTLIEEPP-TDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CcEEEEeCCCCccCCCC-ccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 58999999999998532 22211 2222224799999999999999999999984 111111 11222222212
Q ss_pred CCcCCCCCceecCCCCCCccchhhhhccCch--HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEE
Q 001520 923 DGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFI 1000 (1061)
Q Consensus 923 ~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFi 1000 (1061)
..+++---++++++..- .+...++|+ .|...+ +.+ . +.+ .+.+| +|++.+|+.+=+.+||+ .+.
T Consensus 81 -~~gl~fd~i~i~~~~~s----d~~~~rKP~p~~l~~a~-~~l-~-v~~-~~svm--IGDs~sDi~aAk~aGi~---~I~ 146 (354)
T PRK05446 81 -SQGIKFDEVLICPHFPE----DNCSCRKPKTGLVEEYL-AEG-A-IDL-ANSYV--IGDRETDVQLAENMGIK---GIR 146 (354)
T ss_pred -HcCCceeeEEEeCCcCc----ccCCCCCCCHHHHHHHH-HHc-C-CCc-ccEEE--EcCCHHHHHHHHHCCCe---EEE
Confidence 23444222333332110 111123444 443332 211 1 111 34566 78999999999999996 335
Q ss_pred ECCCC
Q 001520 1001 INPKG 1005 (1061)
Q Consensus 1001 INpkG 1005 (1061)
||+.+
T Consensus 147 v~~~~ 151 (354)
T PRK05446 147 YARET 151 (354)
T ss_pred EECCC
Confidence 56654
No 48
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.51 E-value=0.0076 Score=63.46 Aligned_cols=70 Identities=16% Similarity=0.312 Sum_probs=48.5
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG 930 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G 930 (1061)
..++|++|+||||+.++- . ..+-..+..++++++|.+|+..|+|++... +.+++. .+++..
T Consensus 6 ~~~lI~~DlDGTLL~~~~---~--------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i---~~~~~~-----l~~~~~ 66 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHT---Y--------DWQPAAPWLTRLREAQVPVILCSSKTAAEM---LPLQQT-----LGLQGL 66 (271)
T ss_pred CCeEEEEeCccCCcCCCC---c--------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHH---HHHHHH-----hCCCCC
Confidence 468899999999997532 1 124455778899999999999999998654 445532 224334
Q ss_pred ceecCCCCC
Q 001520 931 PVVISPDGL 939 (1061)
Q Consensus 931 PVLLSPdsL 939 (1061)
|++.....+
T Consensus 67 ~~I~~NGa~ 75 (271)
T PRK03669 67 PLIAENGAV 75 (271)
T ss_pred cEEEeCCCE
Confidence 676665443
No 49
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.47 E-value=0.0067 Score=61.78 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc--hH----
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP--HE---- 954 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP--ee---- 954 (1061)
..||+.++...++++|+++.-+|+..- ..++.+|..+ .+.-+++.++-. +. -..+...+| +.
T Consensus 71 l~pg~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~------~~~~~i~~n~~~-~~--~~~~~~~~p~~~~~~~~ 138 (214)
T TIGR03333 71 IREGFREFVAFINEHGIPFYVISGGMD---FFVYPLLEGI------VEKDRIYCNEAD-FS--NEYIHIDWPHPCDGTCQ 138 (214)
T ss_pred ccccHHHHHHHHHHCCCeEEEECCCcH---HHHHHHHHhh------CCcccEEeceeE-ee--CCeeEEeCCCCCccccc
Confidence 468889999999999999999999844 3444444311 111233322111 10 000111223 33
Q ss_pred -----HHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 955 -----FKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 955 -----FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
.|..+++.+... + ... ..+|+..+|+.+=+.+|+
T Consensus 139 ~~cg~~K~~~l~~~~~~-~---~~~-i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 139 NQCGCCKPSLIRKLSEP-N---DYH-IVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred cCCCCCHHHHHHHHhhc-C---CcE-EEEeCCHHHHHHHHhCCe
Confidence 388888887752 1 122 358999999999988887
No 50
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.45 E-value=0.005 Score=65.12 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred cEEEEecCCcccccccccccccccCCCC-ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDW-SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDW-TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
|+|+||+||||...+- +.+ ..||+.+..+.++++|++++++|+|+..-.......|
T Consensus 2 k~i~~D~DGtl~~~~~---------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDA---------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCC---------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 6899999999997542 112 3589999999999999999999998766544444444
No 51
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.42 E-value=0.0054 Score=61.47 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=38.0
Q ss_pred EEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHH
Q 001520 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTR 914 (1061)
Q Consensus 855 VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR 914 (1061)
|++|+||||+.++- .+ .+-..+..++++++|++|+.+|+|+........
T Consensus 1 i~~DlDGTLl~~~~--~i---------~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 1 IASDIDGTLTDPNR--AI---------NESALEAIRKAESVGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred CeEeccCccCCCCc--cc---------CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 58999999998652 11 255667788899999999999999987665433
No 52
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.35 E-value=0.016 Score=59.66 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccCch--HHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRAPH--EFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~KrPe--eFKIa 958 (1061)
.||+.++...++++|+++..+|+.+...+. ..|. ..++.. =.++..-+ ++...||+ .|...
T Consensus 97 ~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~---~~l~-----~~~l~~~f~~i~~~~--------~~~~~KP~p~~~~~~ 160 (229)
T PRK13226 97 FDGVEGMLQRLECAGCVWGIVTNKPEYLAR---LILP-----QLGWEQRCAVLIGGD--------TLAERKPHPLPLLVA 160 (229)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHH-----HcCchhcccEEEecC--------cCCCCCCCHHHHHHH
Confidence 678888888999999999999998764443 3332 122221 01222211 11123444 44433
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+ ++ ..-+ .+|++.+|+.+-+++|+..
T Consensus 161 ~-~~l-~~-~p-~~~l--~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 161 A-ERI-GV-AP-TDCV--YVGDDERDILAARAAGMPS 191 (229)
T ss_pred H-HHh-CC-Ch-hhEE--EeCCCHHHHHHHHHCCCcE
Confidence 2 221 12 12 1234 4999999999999999964
No 53
>PTZ00174 phosphomannomutase; Provisional
Probab=96.35 E-value=0.0073 Score=63.15 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=41.7
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
.-|+|++|+||||..++- ++. +...+..++++++|++|+..|+|+... ++..|
T Consensus 4 ~~klia~DlDGTLL~~~~--~is---------~~~~~ai~~l~~~Gi~~viaTGR~~~~---i~~~l 56 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN--PIT---------QEMKDTLAKLKSKGFKIGVVGGSDYPK---IKEQL 56 (247)
T ss_pred CCeEEEEECcCCCcCCCC--CCC---------HHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHH
Confidence 358999999999998763 233 445678889999999999999998773 35555
No 54
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.32 E-value=0.0087 Score=61.88 Aligned_cols=65 Identities=17% Similarity=0.388 Sum_probs=46.2
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
+|++|+||||+.++- . -.+...+.+++++++|++|+.+|+|++.. .+.++.. .++. +|++
T Consensus 1 li~~DlDGTLl~~~~--~---------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~---~~~~~~~-----~~~~-~~~I 60 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH--T---------ISPSTKEALAKLREKGIKVVLATGRPYKE---VKNILKE-----LGLD-TPFI 60 (256)
T ss_pred CEEEeCCCCCCCCCC--c---------cCHHHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHH-----cCCC-CCEE
Confidence 478999999997531 1 23677889999999999999999999653 4555542 2232 3666
Q ss_pred cCCCC
Q 001520 934 ISPDG 938 (1061)
Q Consensus 934 LSPds 938 (1061)
+....
T Consensus 61 ~~NGa 65 (256)
T TIGR00099 61 TANGA 65 (256)
T ss_pred EcCCc
Confidence 65544
No 55
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.31 E-value=0.0014 Score=63.43 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=55.1
Q ss_pred hhHH----HHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCc---cchhhhhccCchH-
Q 001520 883 TGVA----HLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFP---SLFREVIRRAPHE- 954 (1061)
Q Consensus 883 ~GVA----kLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~---AL~REVI~KrPee- 954 (1061)
+|+. ++++.++++|++++-+|+.+..++...-. ..++|.=.++.+.. .-. .....+ .+..
T Consensus 88 ~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~--------~~~i~~~~v~~~~~-~~~~~~~~~~~~---~~~~~ 155 (192)
T PF12710_consen 88 PGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAE--------RLGIDDDNVIGNEL-FDNGGGIFTGRI---TGSNC 155 (192)
T ss_dssp TTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHH--------HTTSSEGGEEEEEE-ECTTCCEEEEEE---EEEEE
T ss_pred cCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH--------HcCCCceEEEEEee-eecccceeeeeE---CCCCC
Confidence 5555 99999999999999999987655554433 24566544544432 100 000000 1112
Q ss_pred -HHHHHHHHH---HhhCCCCCCCEEEecCCCchhHHhHh
Q 001520 955 -FKIACLEDI---KALFPSDCNPFYAGFGNRDTDEISYL 989 (1061)
Q Consensus 955 -FKIacL~dI---~~LFP~~~nPFyAGFGNR~TDv~AYr 989 (1061)
-|..+|+.+ ... +....++ .++|+..+|+.+-+
T Consensus 156 ~~K~~~l~~~~~~~~~-~~~~~~~-~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 156 GGKAEALKELYIRDEE-DIDPDRV-IAIGDSINDLPMLR 192 (192)
T ss_dssp SHHHHHHHHHHHHHHH-THTCCEE-EEEESSGGGHHHHH
T ss_pred CcHHHHHHHHHHHhhc-CCCCCeE-EEEECCHHHHHHhC
Confidence 388898888 221 2222344 48999999998743
No 56
>PRK08238 hypothetical protein; Validated
Probab=96.26 E-value=0.02 Score=66.57 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCcEEEEecCCcccccccccc-------ccc-----------------------ccCCCC----ChhhHHHHHHHHHHCC
Q 001520 851 NTRIVISDVDGTITKSDVLGQ-------FMP-----------------------LVGVDW----SQTGVAHLFSAIKENG 896 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGh-------IlP-----------------------~LGKDW----TH~GVAkLYskI~~NG 896 (1061)
..+..|+|+|||++++|.+-. ..| .++-|- -++|+.++.+.++++|
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 445799999999999997520 011 112222 2689999999999999
Q ss_pred CeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEE
Q 001520 897 YQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYA 976 (1061)
Q Consensus 897 YkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyA 976 (1061)
+++.-+|+++...++...+.+ + +- -.++.+.+. ...+|+. |.+.+. ..++.+ .|.
T Consensus 89 ~~v~LaTas~~~~a~~i~~~l------G--lF-d~Vigsd~~---------~~~kg~~-K~~~l~---~~l~~~--~~~- 143 (479)
T PRK08238 89 RKLVLATASDERLAQAVAAHL------G--LF-DGVFASDGT---------TNLKGAA-KAAALV---EAFGER--GFD- 143 (479)
T ss_pred CEEEEEeCCCHHHHHHHHHHc------C--CC-CEEEeCCCc---------cccCCch-HHHHHH---HHhCcc--Cee-
Confidence 999999999988777766655 2 21 123333221 1233333 555444 444432 232
Q ss_pred ecCCCchhHHhHhhcCCCCCcEEEECCCCcee
Q 001520 977 GFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 977 GFGNR~TDv~AYraVGIP~sRIFiINpkGel~ 1008 (1061)
-+||+.+|..+++.+| +-+.|||...+.
T Consensus 144 yvGDS~~Dlp~~~~A~----~av~Vn~~~~l~ 171 (479)
T PRK08238 144 YAGNSAADLPVWAAAR----RAIVVGASPGVA 171 (479)
T ss_pred EecCCHHHHHHHHhCC----CeEEECCCHHHH
Confidence 2599999999999999 567999998775
No 57
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.26 E-value=0.0078 Score=56.03 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=39.2
Q ss_pred EEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 855 VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
|++|+||||...+- +-||++++.+.|+++|+++++||..+-.-.....+.|.
T Consensus 1 ~l~D~dGvl~~g~~------------~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~ 52 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE------------PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLK 52 (101)
T ss_dssp EEEESTTTSEETTE------------E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHH
T ss_pred CEEeCccEeEeCCC------------cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH
Confidence 68999999997322 34999999999999999999999987655444444443
No 58
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.25 E-value=0.021 Score=56.72 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc-CCCCCceecCCCCCCccchhhhhccCc--hHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK-ALPDGPVVISPDGLFPSLFREVIRRAP--HEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~-~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKIa 958 (1061)
++|+..+...++++||++.-+|..+... .+..|..+ +. .+.+ -++.+. ++-..|| +.|+..
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~Sn~~~~~---~~~~l~~~---gl~~~fd-~i~~s~---------~~~~~KP~~~~~~~~ 157 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILSNGSPAM---LKSLVKHA---GLDDPFD-AVLSAD---------AVRAYKPAPQVYQLA 157 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHC---CChhhhh-eeEehh---------hcCCCCCCHHHHHHH
Confidence 6899999999999999999999876543 33344311 11 1112 133322 1222344 456555
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCc
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGE 1006 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGe 1006 (1061)
+ +.+ .+=|. .-+ -+|++.+|+.+=+++|+.. ..|+..|+
T Consensus 158 ~-~~~-~~~p~--~~~--~vgD~~~Di~~A~~~G~~~---i~v~r~~~ 196 (198)
T TIGR01428 158 L-EAL-GVPPD--EVL--FVASNPWDLGGAKKFGFKT---AWVNRPGE 196 (198)
T ss_pred H-HHh-CCChh--hEE--EEeCCHHHHHHHHHCCCcE---EEecCCCC
Confidence 4 111 22122 233 4889999999999999974 34566654
No 59
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.17 E-value=0.032 Score=55.72 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~ 929 (1061)
.+-++|++|+|||++..+. .-.++|+.++...++++|+++.-+|..+. ...++.+++ ..++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~~-----~~gl~- 84 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------NEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVEK-----ALGIP- 84 (170)
T ss_pred CCCCEEEEecCCccccCCC----------CCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHH-----HcCCE-
Confidence 5678999999999996432 12368999999999999999999999872 122333432 12222
Q ss_pred CceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCC
Q 001520 930 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIP 994 (1061)
Q Consensus 930 GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP 994 (1061)
.+ + . ...+.|+.|+..+ +.+ .+ .+ ..-+ -+|++. +|+.+=+++|+.
T Consensus 85 --~~------~---~--~~KP~p~~~~~~l-~~~-~~-~~-~~~l--~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 85 --VL------P---H--AVKPPGCAFRRAH-PEM-GL-TS-EQVA--VVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred --EE------c---C--CCCCChHHHHHHH-HHc-CC-CH-HHEE--EECCcchHHHHHHHHcCCe
Confidence 11 0 0 1234455555433 221 11 11 1233 489998 899999999995
No 60
>PLN02645 phosphoglycolate phosphatase
Probab=96.17 E-value=0.01 Score=64.53 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=42.9
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
.-++|+|||||||...+ + .-+|+.+++++++++|++|+++|+|+........+-|
T Consensus 27 ~~~~~~~D~DGtl~~~~---~---------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 27 SVETFIFDCDGVIWKGD---K---------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred hCCEEEEeCcCCeEeCC---c---------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 34789999999998743 2 2489999999999999999999999855444433334
No 61
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.14 E-value=0.038 Score=57.26 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.|||.++...++++||++.-+|+.+...+...-+-+. - ..+..-.++. .+... + -.+.|+.|..++ +
T Consensus 101 ~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~g---l--~~~f~d~ii~-~~~~~----~--~KP~p~~~~~a~-~ 167 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAA---L--QGYRPDYNVT-TDDVP----A--GRPAPWMALKNA-I 167 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHH---h--cCCCCceEEc-cccCC----C--CCCCHHHHHHHH-H
Confidence 5688888889999999999999987655444332221 1 1121112333 22211 0 133445554333 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ .+-++ ..-+ .+|++.+|+.|=+++||..
T Consensus 168 ~l-~~~~~-~~~l--~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 168 EL-GVYDV-AACV--KVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred Hc-CCCCc-hheE--EECCcHHHHHHHHHCCCeE
Confidence 21 11111 1233 4899999999999999964
No 62
>PRK06769 hypothetical protein; Validated
Probab=96.13 E-value=0.021 Score=57.07 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=70.3
Q ss_pred CcEEEEecCCcccccccccccccccC-CCC-ChhhHHHHHHHHHHCCCeEEEEccchhhHHH--HHHHHHHhcccCCcCC
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVG-VDW-SQTGVAHLFSAIKENGYQLLFLSARAIVQAY--HTRRFLFTLKQDGKAL 927 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LG-KDW-TH~GVAkLYskI~~NGYkILYLSARpIgqA~--~TR~yL~~i~Q~g~~L 927 (1061)
-|++++|.||||-. |.. ... .++ ..|||.+++..++++||++.-+|..+-.++. ..+.++..+. ..+|
T Consensus 4 ~~~~~~d~d~~~~~-----~~~-~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~--~~g~ 75 (173)
T PRK06769 4 IQAIFIDRDGTIGG-----DTT-IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELK--GFGF 75 (173)
T ss_pred CcEEEEeCCCcccC-----CCC-CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHH--hCCc
Confidence 47899999999942 322 111 122 3699999999999999999999987532110 0111221111 2334
Q ss_pred CCCceecCCCCCCccchhhh--hccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 928 PDGPVVISPDGLFPSLFREV--IRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 928 P~GPVLLSPdsLf~AL~REV--I~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
. .++.+.... ..++ -.++|+.|+..+- .+ .+ .+ ..-+| +|++.+|+.+-+++|+..
T Consensus 76 ~--~~~~~~~~~----~~~~~~~KP~p~~~~~~~~-~l-~~-~p-~~~i~--IGD~~~Di~aA~~aGi~~ 133 (173)
T PRK06769 76 D--DIYLCPHKH----GDGCECRKPSTGMLLQAAE-KH-GL-DL-TQCAV--IGDRWTDIVAAAKVNATT 133 (173)
T ss_pred C--EEEECcCCC----CCCCCCCCCCHHHHHHHHH-Hc-CC-CH-HHeEE--EcCCHHHHHHHHHCCCeE
Confidence 3 123322100 0111 2344556765542 22 22 11 23455 889999999999999963
No 63
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.05 E-value=0.038 Score=61.56 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=42.4
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
|+|++|+||||..++- +.| +-+....++++++|.+|+..|+|+..-....++-|
T Consensus 2 KLIftDLDGTLLd~~~---------~~~--~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L 55 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------NSY--GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQL 55 (302)
T ss_pred cEEEEeCCCCCcCCCC---------cCC--HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 7899999999998543 122 44678889999999999999999887655555444
No 64
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.00 E-value=0.013 Score=60.93 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=45.5
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV 933 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL 933 (1061)
+|++|+||||+.++- +. . +...+..++++++|++|+.+|+|+...+ +.+++ ..+++ .|++
T Consensus 1 li~~DlDGTll~~~~---------~~-~-~~~~~~i~~l~~~g~~~~~~TgR~~~~~---~~~~~-----~~~~~-~~~I 60 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG---------YD-W-GPAKEVLERLQELGIPVIPCTSKTAAEV---EYLRK-----ELGLE-DPFI 60 (256)
T ss_pred CEEEcCCCCCcCCCC---------cC-c-hHHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHH-----HcCCC-CcEE
Confidence 478999999998652 01 1 2467888899999999999999998753 44553 23344 4666
Q ss_pred cCCCC
Q 001520 934 ISPDG 938 (1061)
Q Consensus 934 LSPds 938 (1061)
+....
T Consensus 61 ~~NGa 65 (256)
T TIGR01486 61 VENGG 65 (256)
T ss_pred EcCCe
Confidence 65544
No 65
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.99 E-value=0.014 Score=61.61 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=40.6
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHH
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYH 912 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~ 912 (1061)
-|+|++||||||+.++- -..+.+.+..++++++|++|+-+|+|+......
T Consensus 4 ~kli~~DlDGTLl~~~~-----------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~ 53 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEV 53 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 47899999999998542 123678889999999999999999998865443
No 66
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.95 E-value=0.016 Score=55.52 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=42.8
Q ss_pred cEEEEecCCccccccccc-ccccccCCCCChhhHHHHHHHHHHCCCeEEEEccc-hhhHHH
Q 001520 853 RIVISDVDGTITKSDVLG-QFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSAR-AIVQAY 911 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlG-hIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSAR-pIgqA~ 911 (1061)
|++++|+||||+-....- +-.+.+..+-..+|+.++.+.++++||++.-+|++ +...+.
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~ 61 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAY 61 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHH
Confidence 689999999999652100 11123333456799999999999999999999998 554443
No 67
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.87 E-value=0.039 Score=54.86 Aligned_cols=91 Identities=25% Similarity=0.233 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc-CCCCCceecCCCCCCccchhhhhccCch--HHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK-ALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~-~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIa 958 (1061)
.||+.++.+.++++||++.-+|+.+.. .+..|... +. .+.+ .++.+. ++...+|+ .|...
T Consensus 107 ~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~---~l~~~fd-~i~~s~---------~~~~~KP~~~~~~~~ 169 (203)
T TIGR02252 107 YPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEAL---GLLEYFD-FVVTSY---------EVGAEKPDPKIFQEA 169 (203)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHC---CcHHhcc-eEEeec---------ccCCCCCCHHHHHHH
Confidence 578888888888899999888886532 23344311 11 1111 233322 12223444 45443
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP~ 995 (1061)
+ +.+ .+-|. .-+ -+|++. +|+.+-+++|+..
T Consensus 170 ~-~~~-~~~~~--~~~--~IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 170 L-ERA-GISPE--EAL--HIGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred H-HHc-CCChh--HEE--EECCCchHHHHHHHHcCCee
Confidence 3 221 11121 223 488886 8999999999863
No 68
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.83 E-value=0.01 Score=59.37 Aligned_cols=52 Identities=27% Similarity=0.627 Sum_probs=38.6
Q ss_pred cEEEEecCCcccccccccccccccCCCCC--hhhHHHHHHHHHHCCCeEEEEccc
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSAR 905 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWT--H~GVAkLYskI~~NGYkILYLSAR 905 (1061)
||..+|.||||.+... |...+.=..||- +++|.+..+.++++||+|+-+|--
T Consensus 1 Kia~fD~DgTLi~~~s-~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS-GKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-ST-STTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCC-CCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 7899999999988654 444444455764 789999999999999999999953
No 69
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.75 E-value=0.037 Score=52.62 Aligned_cols=88 Identities=20% Similarity=0.159 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhh-ccCchHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVI-RRAPHEFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI-~KrPeeFKIacL 960 (1061)
-+|+.+++..|+++||++.-+|++....+......+ +. . ... .++.+.+ +. .+.|+.|...+
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~---~-~f~-~i~~~~~---------~~~Kp~~~~~~~~~- 128 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LG---D-YFD-LILGSDE---------FGAKPEPEIFLAAL- 128 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HH---h-cCc-EEEecCC---------CCCCcCHHHHHHHH-
Confidence 489999999999999999999999877666554442 11 1 122 2333332 11 22334444443
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcC
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVG 992 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVG 992 (1061)
..+.....-+| +|++..|+.+=+++|
T Consensus 129 ----~~~~~~~~~l~--iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 129 ----ESLGLPPEVLH--VGDNLNDIEGARNAG 154 (154)
T ss_pred ----HHcCCCCCEEE--EeCCHHHHHHHHHcc
Confidence 22221112344 899999999988876
No 70
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.69 E-value=0.023 Score=55.43 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=72.0
Q ss_pred CcEEEEecCCccccccc---ccccccccCC------------CCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHH
Q 001520 852 TRIVISDVDGTITKSDV---LGQFMPLVGV------------DWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRF 916 (1061)
Q Consensus 852 dKIVISDIDGTITKSDv---lGhIlP~LGK------------DWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~y 916 (1061)
.+.+|.|+||||-.+-. .+-..+...- -+..||+.++...++ +||++.-.|+.+-..+...-+.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHH
Confidence 46799999999998632 2211111111 134799999999998 6799999999877766654433
Q ss_pred HHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhh-CCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 917 LFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKAL-FPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 917 L~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~L-FP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+. +. ..+. ..++... ++...+|+ +++.+..+ .++ .+-+ .+|++..|+.+-.+.||+.
T Consensus 81 l~-~~---~~~f-~~i~~~~---------d~~~~KP~-----~~k~l~~l~~~p-~~~i--~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 81 LD-PK---KYFG-YRRLFRD---------ECVFVKGK-----YVKDLSLLGRDL-SNVI--IIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred hC-cC---CCEe-eeEEECc---------cccccCCe-----EeecHHHcCCCh-hcEE--EEECCHHHhhcCccCEEEe
Confidence 31 00 0010 1122221 22234565 23333322 122 2233 5999999999999999887
Q ss_pred Cc
Q 001520 996 GK 997 (1061)
Q Consensus 996 sR 997 (1061)
..
T Consensus 139 ~~ 140 (148)
T smart00577 139 KP 140 (148)
T ss_pred cC
Confidence 54
No 71
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.68 E-value=0.021 Score=60.13 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=39.8
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
+.|++||||||...+- ..+|+.++.++++++|.+|+++|..+--........|.
T Consensus 2 ~~~~~D~DGtl~~~~~------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~ 55 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLA 55 (249)
T ss_pred CEEEEeCCCceEcCCe------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 6899999999998532 23688999999999999999999633222233455554
No 72
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.64 E-value=0.038 Score=59.09 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.+|+.++...++++||++.-+|+.+...+...-..+. + ..+.+. ++.+. ... ...+.|+.|..++ +
T Consensus 111 ~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g-l----~~~Fd~-ii~~~-d~~------~~KP~Pe~~~~a~-~ 176 (260)
T PLN03243 111 RPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVG-M----EGFFSV-VLAAE-DVY------RGKPDPEMFMYAA-E 176 (260)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcC-C----HhhCcE-EEecc-cCC------CCCCCHHHHHHHH-H
Confidence 4777788888999999999999987654444433331 1 111221 22222 110 0133455676544 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ .+-|. .-+ .+|++.+|+.|=+++|+..
T Consensus 177 ~l-~~~p~--~~l--~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 177 RL-GFIPE--RCI--VFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred Hh-CCChH--HeE--EEcCCHHHHHHHHHcCCEE
Confidence 21 22222 123 4999999999999999963
No 73
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.62 E-value=0.022 Score=59.34 Aligned_cols=45 Identities=18% Similarity=0.474 Sum_probs=37.0
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHH
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQA 910 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA 910 (1061)
+|++|+||||..++- .-+...+..++++++|.+|+.+|+|+...+
T Consensus 1 li~~DlDGTLl~~~~------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~ 45 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY------------EPGPAREALEELKDLGFPIVFVSSKTRAEQ 45 (225)
T ss_pred CEEEeCCCCCcCCCC------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 489999999997321 225688999999999999999999987753
No 74
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.56 E-value=0.024 Score=60.31 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.3
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhh
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV 908 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIg 908 (1061)
++|++||||||..++- +-+|+.++++.++++|+++.++|+|+..
T Consensus 3 ~~~~~D~DGtl~~~~~------------~~~ga~e~l~~L~~~g~~~~~~Tnns~~ 46 (279)
T TIGR01452 3 QGFIFDCDGVLWLGER------------VVPGAPELLDRLARAGKAALFVTNNSTK 46 (279)
T ss_pred cEEEEeCCCceEcCCe------------eCcCHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6899999999987421 3478999999999999999999998643
No 75
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=95.51 E-value=0.027 Score=57.24 Aligned_cols=111 Identities=15% Similarity=0.252 Sum_probs=63.2
Q ss_pred CcEEEEecCCcccccccccccccccCCCCC----hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCC
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWS----QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKAL 927 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWT----H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~L 927 (1061)
-|++||||||++|.--+. ...-|.-+. +.|.+ ...+++.||++..+|+.+-..+...-+.| ++
T Consensus 7 i~~~v~d~dGv~tdg~~~---~~~~g~~~~~~~~~D~~~--~~~L~~~Gi~laIiT~k~~~~~~~~l~~l--------gi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIV---INDEGIESRNFDIKDGMG--VIVLQLCGIDVAIITSKKSGAVRHRAEEL--------KI 73 (169)
T ss_pred CeEEEEeCceeeECCeEE---EcCCCcEEEEEecchHHH--HHHHHHCCCEEEEEECCCcHHHHHHHHHC--------CC
Confidence 588999999999973221 111222221 22332 34567899999999999766554444333 23
Q ss_pred CCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 928 PDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 928 P~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
. .+|.. +.++|+.|+.. ...+.-..... +.||+..+|+.+-+.+|+..
T Consensus 74 ~---------~~f~~-----~kpkp~~~~~~-----~~~l~~~~~ev-~~iGD~~nDi~~~~~ag~~~ 121 (169)
T TIGR02726 74 K---------RFHEG-----IKKKTEPYAQM-----LEEMNISDAEV-CYVGDDLVDLSMMKRVGLAV 121 (169)
T ss_pred c---------EEEec-----CCCCHHHHHHH-----HHHcCcCHHHE-EEECCCHHHHHHHHHCCCeE
Confidence 2 11111 13345444333 22221111122 36999999999999999763
No 76
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=95.49 E-value=0.028 Score=56.09 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=38.5
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHH
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAY 911 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~ 911 (1061)
+|++|+||||+.++. + -..+.+.+...+++++|.+|+.+|+|+.....
T Consensus 1 li~~D~DgTL~~~~~--~--------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~ 48 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA--H--------ELSPETIEALERLREAGVKVVLVTGRSLAEIK 48 (204)
T ss_pred CEEEeCcCCCcCCCC--C--------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence 488999999998541 1 12478889999999999999999999986444
No 77
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.45 E-value=0.057 Score=58.28 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC-ceecCCCCCCccchhhhhccCch--HHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG-PVVISPDGLFPSLFREVIRRAPH--EFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G-PVLLSPdsLf~AL~REVI~KrPe--eFKIa 958 (1061)
.|||.++...++++||++.-+|+.+..........+. +..+..+ .++ ..+ ++...+|+ .|..+
T Consensus 146 ~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~-----~~~~~~~~~~v-~~~--------~~~~~KP~p~~~~~a 211 (286)
T PLN02779 146 RPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL-----GPERAQGLDVF-AGD--------DVPKKKPDPDIYNLA 211 (286)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc-----cccccCceEEE-ecc--------ccCCCCCCHHHHHHH
Confidence 5688888888999999999999975544433222220 1112221 122 111 12233454 55544
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+ .+. .-+ .+|++.+|+.|=+++|++.
T Consensus 212 ~-~~~-~~-~p~-~~l--~IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 212 A-ETL-GV-DPS-RCV--VVEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred H-HHh-Cc-ChH-HEE--EEeCCHHhHHHHHHcCCEE
Confidence 3 211 11 111 223 4899999999999999963
No 78
>PLN02887 hydrolase family protein
Probab=95.40 E-value=0.029 Score=66.80 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=46.9
Q ss_pred eEEEEEecCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHH
Q 001520 842 DARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAY 911 (1061)
Q Consensus 842 ea~IYLW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~ 911 (1061)
.+.+-.++..-|+|++||||||..++- .+ .+...+..++++++|++|+..|+|+...+.
T Consensus 298 ~~~~~~~~~~iKLIa~DLDGTLLn~d~--~I---------s~~t~eAI~kl~ekGi~~vIATGR~~~~i~ 356 (580)
T PLN02887 298 EGSLRFYKPKFSYIFCDMDGTLLNSKS--QI---------SETNAKALKEALSRGVKVVIATGKARPAVI 356 (580)
T ss_pred hcchhhhccCccEEEEeCCCCCCCCCC--cc---------CHHHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence 455666777889999999999998642 22 255678899999999999999999987543
No 79
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=95.33 E-value=0.0084 Score=56.29 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=21.2
Q ss_pred cccCCCCCCC-CCcccccccccccccccce
Q 001520 1026 HGMFPHTTST-EQVFFLHFFFLCSILGLFY 1054 (1061)
Q Consensus 1026 D~~FPpl~~~-~~~~fs~f~yWr~pL~~~~ 1054 (1061)
+..+++.... ...+|++|.|||.|||..-
T Consensus 5 ~~~~~~~~~~~~~~~f~sF~fWR~PlP~id 34 (87)
T PF15017_consen 5 DWDKPPPQHDPEDEEFNSFLFWRNPLPDID 34 (87)
T ss_pred cccCCCccCCcccccccceeeccCCCCCCC
Confidence 4455554433 4678999999999999863
No 80
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.21 E-value=0.036 Score=55.16 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccc-hhhhhccCchHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSL-FREVIRRAPHEFKIAC 959 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL-~REVI~KrPeeFKIac 959 (1061)
..||+.++.++++++ |+++.+|+.+-.........+. + ...+| + .|... ..+...++|+.|+.++
T Consensus 75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~-l---~~~f~-~--------~f~~i~~~~~~~~kp~~~~~a~ 140 (197)
T PHA02597 75 AYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFN-L---NALFP-G--------AFSEVLMCGHDESKEKLFIKAK 140 (197)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCC-H---HHhCC-C--------cccEEEEeccCcccHHHHHHHH
Confidence 467888888888886 6777788754332221111110 0 01111 1 11100 0111123455444433
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
..+.+ .-. .-+|++.+|+.|=+++ ||+.
T Consensus 141 -----~~~~~--~~~-v~vgDs~~di~aA~~a~~Gi~~ 170 (197)
T PHA02597 141 -----EKYGD--RVV-CFVDDLAHNLDAAHEALSQLPV 170 (197)
T ss_pred -----HHhCC--CcE-EEeCCCHHHHHHHHHHHcCCcE
Confidence 33321 112 2599999999999998 9983
No 81
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=95.15 E-value=0.1 Score=54.06 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.+|+.++...++++||++.-+|+-+...+....+.+. + ..+-+ -++.+- .. . ...+.|+.|..++=+
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~-l----~~~fd-~iv~s~-~~----~--~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTG-L----DAHLD-LLLSTH-TF----G--YPKEDQRLWQAVAEH 161 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCC-c----HHHCC-EEEEee-eC----C--CCCCCHHHHHHHHHH
Confidence 5899999999999999999999855433333222220 1 11112 122221 11 0 012334556554411
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCcee
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~ 1008 (1061)
..+ ++. .-+ .+|++..|+.+=+++|+... |.+-++.+...
T Consensus 162 --~~~-~p~-~~l--~igDs~~di~aA~~aG~~~~-~~v~~~~~~~~ 201 (224)
T PRK14988 162 --TGL-KAE-RTL--FIDDSEPILDAAAQFGIRYC-LGVTNPDSGIA 201 (224)
T ss_pred --cCC-ChH-HEE--EEcCCHHHHHHHHHcCCeEE-EEEeCCCCCcc
Confidence 122 221 223 48999999999999999751 22345665543
No 82
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.06 E-value=0.14 Score=53.43 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=64.9
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG 930 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G 930 (1061)
.-++|++|+|||+.... .+-||+.++.+.++++|+++.+||..+-..+... ..|. ..+|+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~-~~L~-----~~gl~~~ 68 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLH-KTLK-----SLGINAD 68 (242)
T ss_pred cCCEEEEecccccccCC------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHH-HHHH-----HCCCCcc
Confidence 35689999999998632 2359999999999999999999999765443332 3453 3455521
Q ss_pred --ceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 931 --PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 931 --PVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
..++++ ...-.+.|..++.-+.......| .+|++..|+.....+|.
T Consensus 69 ~~~~Ii~s----------------~~~~~~~l~~~~~~~~~~~~~~~-~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 69 LPEMIISS----------------GEIAVQMILESKKRFDIRNGIIY-LLGHLENDIINLMQCYT 116 (242)
T ss_pred ccceEEcc----------------HHHHHHHHHhhhhhccCCCceEE-EeCCcccchhhhcCCCc
Confidence 122222 11111344443332221111133 57888888887766665
No 83
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.01 E-value=0.16 Score=52.41 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHH-
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIAC- 959 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIac- 959 (1061)
..+||.++...++..||++.-+|+++-..+..+-+.+ +..-.- ..+... ...-.++|+.-.+..
T Consensus 90 ~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~------gl~~~F-~~i~g~--------~~~~~~KP~P~~l~~~ 154 (220)
T COG0546 90 LFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL------GLADYF-DVIVGG--------DDVPPPKPDPEPLLLL 154 (220)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh------CCcccc-ceEEcC--------CCCCCCCcCHHHHHHH
Confidence 4789999999999999999999999877666665554 211111 111111 223345677544443
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
++.+-.. |. .-+ ..|++..|+.|=+++|++
T Consensus 155 ~~~~~~~-~~--~~l--~VGDs~~Di~aA~~Ag~~ 184 (220)
T COG0546 155 LEKLGLD-PE--EAL--MVGDSLNDILAAKAAGVP 184 (220)
T ss_pred HHHhCCC-hh--heE--EECCCHHHHHHHHHcCCC
Confidence 3332222 21 124 489999999999999976
No 84
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=94.93 E-value=0.035 Score=53.86 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc-CCCCCceecCCCCCCccchhhhh--ccCchHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK-ALPDGPVVISPDGLFPSLFREVI--RRAPHEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~-~LP~GPVLLSPdsLf~AL~REVI--~KrPeeFKIa 958 (1061)
.|||.++...++++||++.-+|+.... +..|..+ +. .+-+. + +..+ ++. .+.|+.|+.+
T Consensus 89 ~pg~~~~L~~L~~~g~~~~i~s~~~~~-----~~~l~~~---~l~~~f~~-~-~~~~--------~~~~~kp~p~~~~~~ 150 (185)
T TIGR01990 89 LPGIKNLLDDLKKNNIKIALASASKNA-----PTVLEKL---GLIDYFDA-I-VDPA--------EIKKGKPDPEIFLAA 150 (185)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCccH-----HHHHHhc---CcHhhCcE-E-Eehh--------hcCCCCCChHHHHHH
Confidence 478888888899999998888875321 2234311 10 11111 1 1111 112 3344556654
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+-+ + .+ ++ ...+ .+|++.+|+.+=+++|++
T Consensus 151 ~~~-~-~~-~~-~~~v--~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 151 AEG-L-GV-SP-SECI--GIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred HHH-c-CC-CH-HHeE--EEecCHHHHHHHHHcCCE
Confidence 321 1 11 11 1233 388999999999999985
No 85
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=94.80 E-value=0.095 Score=56.03 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC--CceecCCCCCCccchhhhhccCch--HHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD--GPVVISPDGLFPSLFREVIRRAPH--EFKI 957 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~--GPVLLSPdsLf~AL~REVI~KrPe--eFKI 957 (1061)
.+|+.++...++++||++.-+|+.+...+. ..|.. .+|.. ..++.+ +. +-.++|+ .|+.
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~---~~l~~-----~~i~~~f~~i~~~-d~--------~~~~Kp~p~~~~~ 165 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNKPERFVA---PLLDQ-----MKIGRYFRWIIGG-DT--------LPQKKPDPAALLF 165 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCcHHHHH---HHHHH-----cCcHhhCeEEEec-CC--------CCCCCCCcHHHHH
Confidence 588888888999999999999997654322 22220 11110 112222 21 1123444 3443
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ +. ..+-|. -.+ .+|++.+|+.+=+++|+..
T Consensus 166 ~~-~~-~g~~~~---~~l-~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 166 VM-KM-AGVPPS---QSL-FVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred HH-HH-hCCChh---HEE-EECCCHHHHHHHHHCCCeE
Confidence 33 21 122121 222 5999999999999999974
No 86
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=94.38 E-value=0.094 Score=56.61 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
.|||.++...++++|+++..+|+..-..+...-+.+ +|.. =..+.+.+ + ..++|+ .+
T Consensus 144 ~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~--------gl~~~F~~vi~~~--------~-~~~k~~-----~~ 201 (273)
T PRK13225 144 FPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ--------GLRSLFSVVQAGT--------P-ILSKRR-----AL 201 (273)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------CChhheEEEEecC--------C-CCCCHH-----HH
Confidence 578888888999999999999987544333332222 1210 00111111 1 112333 33
Q ss_pred HHHHhhCCCC-CCCEEEecCCCchhHHhHhhcCCCC
Q 001520 961 EDIKALFPSD-CNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 961 ~dI~~LFP~~-~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
..+...+.-. ..-+ -+|++..|+.+=+++|+..
T Consensus 202 ~~~l~~~~~~p~~~l--~IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 202 SQLVAREGWQPAAVM--YVGDETRDVEAARQVGLIA 235 (273)
T ss_pred HHHHHHhCcChhHEE--EECCCHHHHHHHHHCCCeE
Confidence 3333332211 1223 5899999999999999964
No 87
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=94.38 E-value=0.14 Score=52.74 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=69.8
Q ss_pred CcEEEEecCCccccccccc----cccc----------ccCCC-CChhhHHHHHHHHHHCCCeEEEEccc-hhhHHHHHHH
Q 001520 852 TRIVISDVDGTITKSDVLG----QFMP----------LVGVD-WSQTGVAHLFSAIKENGYQLLFLSAR-AIVQAYHTRR 915 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlG----hIlP----------~LGKD-WTH~GVAkLYskI~~NGYkILYLSAR-pIgqA~~TR~ 915 (1061)
+|+||||.|+|+...-.-. -+.| ..+.. -..+||.++...|+++||++.-+|+. +...+...-+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 5899999999997532211 1111 11221 23799999999999999999999977 6554433333
Q ss_pred HHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhC----CCCCCCEEEecCCCchhHHhHhhc
Q 001520 916 FLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALF----PSDCNPFYAGFGNRDTDEISYLKV 991 (1061)
Q Consensus 916 yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LF----P~~~nPFyAGFGNR~TDv~AYraV 991 (1061)
.+. +...+...|-=..+ +.... ..+. .++..+. .+++.+...+ .+ ..-+| +|++..|+.+=+++
T Consensus 82 ~~~-l~~~~~~~~~~~~F---d~iv~--~~~~--~~~kp~~-~i~~~~~~~~~~gl~p-~e~l~--VgDs~~di~aA~~a 149 (174)
T TIGR01685 82 TFE-ITYAGKTVPMHSLF---DDRIE--IYKP--NKAKQLE-MILQKVNKVDPSVLKP-AQILF--FDDRTDNVREVWGY 149 (174)
T ss_pred hCC-cCCCCCcccHHHhc---eeeee--ccCC--chHHHHH-HHHHHhhhcccCCCCH-HHeEE--EcChhHhHHHHHHh
Confidence 331 11111111100000 00000 0111 1111111 2244444332 22 12344 99999999999999
Q ss_pred CCCC
Q 001520 992 GIPR 995 (1061)
Q Consensus 992 GIP~ 995 (1061)
|+..
T Consensus 150 Gi~~ 153 (174)
T TIGR01685 150 GVTS 153 (174)
T ss_pred CCEE
Confidence 9965
No 88
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=94.27 E-value=0.19 Score=52.23 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC---CceecCCCCCCccchhhhhccCchHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD---GPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~---GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
..||+.++...++++| ++.-+|+-.-..+....+.| +++. -.+....++.+ ..+.+. ...-|.
T Consensus 69 l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l--------gi~~~~an~l~~~~~g~~---tG~~~~--~~~~K~ 134 (203)
T TIGR02137 69 PLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL--------GFPTLLCHKLEIDDSDRV---VGYQLR--QKDPKR 134 (203)
T ss_pred CCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc--------CCchhhceeeEEecCCee---ECeeec--CcchHH
Confidence 4899999999999985 99999997666555443333 2321 00111110111 111111 123477
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeeccc--CCcchhhhhhhcc
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRV--DSKTYSSIHALVH 1026 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~--~~sSY~sL~elVD 1026 (1061)
.+++.++.. ....+ ++|+..+|+.+.+.+|++. .++++-.|...... -..+|..|-+..+
T Consensus 135 ~~l~~l~~~----~~~~v-~vGDs~nDl~ml~~Ag~~i----a~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 135 QSVIAFKSL----YYRVI-AAGDSYNDTTMLSEAHAGI----LFHAPENVIREFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred HHHHHHHhh----CCCEE-EEeCCHHHHHHHHhCCCCE----EecCCHHHHHhCCCCCcccCHHHHHHHHH
Confidence 777777654 11344 7999999999999999874 55666666533211 1356666655544
No 89
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=94.25 E-value=0.058 Score=56.18 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=38.7
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHT 913 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~T 913 (1061)
.+|++|+|||++.++- + ..-.-+..-+++++++++|-+|+++|+|+...+...
T Consensus 2 ~li~tDlDGTLl~~~~-~-------~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~ 54 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTD-G-------DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKEL 54 (249)
T ss_pred eEEEEcCCCcCcCCCC-C-------ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHH
Confidence 4789999999997431 1 011126667778888999999999999998755544
No 90
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.21 E-value=0.45 Score=49.81 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccc--------hhhHHHHHHHH-HHhcc
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSAR--------AIVQAYHTRRF-LFTLK 921 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSAR--------pIgqA~~TR~y-L~~i~ 921 (1061)
..|++..|-||||-+-.-- .+. .+-+=+-.+|+.....++.+.||+++-+|-- +.......-+| +..+.
T Consensus 4 ~~k~lflDRDGtin~d~~~-yv~-~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~ 81 (181)
T COG0241 4 DQKALFLDRDGTINIDKGD-YVD-SLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILA 81 (181)
T ss_pred CCcEEEEcCCCceecCCCc-ccC-cHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHH
Confidence 4789999999999974221 111 1112224899999999999999999999972 22222222233 33345
Q ss_pred cCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 922 QDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 922 Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+.|..|. + +++.|..--. .-.-|+| |..+|..+..-|..+-.-.| -.|+|.+|+.+=.++||.
T Consensus 82 ~~gv~id-~-i~~Cph~p~~----~c~cRKP---~~gm~~~~~~~~~iD~~~s~-~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 82 SQGVKID-G-ILYCPHHPED----NCDCRKP---KPGMLLSALKEYNIDLSRSY-VVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HcCCccc-e-EEECCCCCCC----CCcccCC---ChHHHHHHHHHhCCCccceE-EecCcHHHHHHHHHCCCC
Confidence 5666564 2 4444532110 0123445 55565665555554433444 488999999999999999
No 91
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.15 E-value=0.1 Score=55.89 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.6
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHH-CCCeEEEEccchhhHHH
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKE-NGYQLLFLSARAIVQAY 911 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~-NGYkILYLSARpIgqA~ 911 (1061)
..+|++|+||||+..- +.-..-...+...+..+++++ +|.+|+.+|+|+.....
T Consensus 14 ~~li~~D~DGTLl~~~------~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~ 68 (266)
T PRK10187 14 NYAWFFDLDGTLAEIK------PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELD 68 (266)
T ss_pred CEEEEEecCCCCCCCC------CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHH
Confidence 4689999999999620 000111234788888999987 79999999999987553
No 92
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.02 E-value=0.33 Score=48.18 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc-hHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP-HEFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP-eeFKIacL 960 (1061)
.+|+.++.+.++++|+++.-+|+.+-.+....-+.|. +. +.+.. .+....++.+ ..++..... ..-|...+
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg-~~---~~~~~-~l~~~~~g~~---~g~~~~~~~~g~~K~~~l 160 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG-ID---NAIGT-RLEESEDGIY---TGNIDGNNCKGEGKVHAL 160 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC-Cc---ceEec-ceEEcCCCEE---eCCccCCCCCChHHHHHH
Confidence 5688888888899999999999988766555544441 11 01110 0222122211 111111111 14577777
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCce
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEV 1007 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel 1007 (1061)
+.+........... .+||++.+|+.+-+.+|.+ +.|||+..|
T Consensus 161 ~~~~~~~~~~~~~~-~~~gDs~~D~~~~~~a~~~----~~v~~~~~l 202 (202)
T TIGR01490 161 AELLAEEQIDLKDS-YAYGDSISDLPLLSLVGHP----YVVNPDKKL 202 (202)
T ss_pred HHHHHHcCCCHHHc-EeeeCCcccHHHHHhCCCc----EEeCCCCCC
Confidence 77665432221123 3699999999999999976 488887654
No 93
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.98 E-value=0.21 Score=52.38 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch-HHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH-EFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe-eFKIacL 960 (1061)
.||..+|...+++.|++++-+||-+..+++...+.|. ...=-+..+...++ -|...++...-. +-|...|
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg------~d~~~an~l~~~dG---~ltG~v~g~~~~~~~K~~~l 149 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLG------IDYVVANELEIDDG---KLTGRVVGPICDGEGKAKAL 149 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhC------CchheeeEEEEeCC---EEeceeeeeecCcchHHHHH
Confidence 6888899999999999999999999999998888883 22223344444443 122233333223 5688999
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeee
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVN 1010 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e 1010 (1061)
+++...+.....-. .+||+..+|.-+-..+|.| +.+||++++...
T Consensus 150 ~~~~~~~g~~~~~~-~a~gDs~nDlpml~~ag~~----ia~n~~~~l~~~ 194 (212)
T COG0560 150 RELAAELGIPLEET-VAYGDSANDLPMLEAAGLP----IAVNPKPKLRAL 194 (212)
T ss_pred HHHHHHcCCCHHHe-EEEcCchhhHHHHHhCCCC----eEeCcCHHHHHH
Confidence 88888754321223 4899999999999999988 589999998643
No 94
>PLN02940 riboflavin kinase
Probab=93.97 E-value=0.14 Score=57.84 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCC-CCceecCCCCCCccchhhhhccCc--hHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALP-DGPVVISPDGLFPSLFREVIRRAP--HEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP-~GPVLLSPdsLf~AL~REVI~KrP--eeFKIa 958 (1061)
.+|+.++...++++|+++.-+|+.+-..+. ..|.. ..+|- .-..++..+ ++..++| +.|..+
T Consensus 95 ~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~---~~l~~----~~gl~~~Fd~ii~~d--------~v~~~KP~p~~~~~a 159 (382)
T PLN02940 95 LPGANRLIKHLKSHGVPMALASNSPRANIE---AKISC----HQGWKESFSVIVGGD--------EVEKGKPSPDIFLEA 159 (382)
T ss_pred CcCHHHHHHHHHHCCCcEEEEeCCcHHHHH---HHHHh----ccChHhhCCEEEehh--------hcCCCCCCHHHHHHH
Confidence 588888889999999999999998644332 23310 01110 001222222 1223344 455544
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+ +.+ .+ ++. .-+ .+|++..|+.|=+++||+
T Consensus 160 ~-~~l-gv-~p~-~~l--~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 160 A-KRL-NV-EPS-NCL--VIEDSLPGVMAGKAAGME 189 (382)
T ss_pred H-HHc-CC-Chh-HEE--EEeCCHHHHHHHHHcCCE
Confidence 4 222 22 221 223 489999999999999997
No 95
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.59 E-value=0.13 Score=62.75 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=42.2
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
..|+|++|+||||+.++-. .+ +-..+..++++++|++|+-.|+|+.........-|
T Consensus 415 ~~KLIfsDLDGTLLd~d~~---------i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~L 470 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY---------SY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNEL 470 (694)
T ss_pred eeeEEEEECcCCCcCCCCc---------cC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc
Confidence 4488999999999986531 12 33567888999999999999999988655544444
No 96
>PRK09449 dUMP phosphatase; Provisional
Probab=93.24 E-value=0.28 Score=49.62 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCC---CCCceecCCCCCCccchhhhhccCch--HHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKAL---PDGPVVISPDGLFPSLFREVIRRAPH--EFK 956 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~L---P~GPVLLSPdsLf~AL~REVI~KrPe--eFK 956 (1061)
.||+.++...|+ +||++..+|..+... ++..|. ..+| -+. ++.+- ++..++|+ .|.
T Consensus 97 ~~g~~~~L~~L~-~~~~~~i~Tn~~~~~---~~~~l~-----~~~l~~~fd~-v~~~~---------~~~~~KP~p~~~~ 157 (224)
T PRK09449 97 LPGAVELLNALR-GKVKMGIITNGFTEL---QQVRLE-----RTGLRDYFDL-LVISE---------QVGVAKPDVAIFD 157 (224)
T ss_pred CccHHHHHHHHH-hCCeEEEEeCCcHHH---HHHHHH-----hCChHHHcCE-EEEEC---------ccCCCCCCHHHHH
Confidence 577777888888 579988888854333 333332 1112 111 22221 22223454 444
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCCC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIPR 995 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP~ 995 (1061)
..+ +.+ .+.|++ .-+| +|++. +|+.+=+++|+..
T Consensus 158 ~~~-~~~-~~~~~~-~~~~--vgD~~~~Di~~A~~aG~~~ 192 (224)
T PRK09449 158 YAL-EQM-GNPDRS-RVLM--VGDNLHSDILGGINAGIDT 192 (224)
T ss_pred HHH-HHc-CCCCcc-cEEE--EcCCcHHHHHHHHHCCCcE
Confidence 332 222 222221 2344 78897 6999999999974
No 97
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=93.19 E-value=0.16 Score=55.73 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=51.8
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
-+++++|+||||-+. ..+-||++++.+.|+++|-+++|||..+.--.....+-|.++ .+...+..-
T Consensus 8 y~~~l~DlDGvl~~G------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~--~~~~~~~~~ 73 (269)
T COG0647 8 YDGFLFDLDGVLYRG------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSL--GGVDVTPDD 73 (269)
T ss_pred cCEEEEcCcCceEeC------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhh--cCCCCCHHH
Confidence 357999999999963 445799999999999999999999999877777666666411 233345444
Q ss_pred eecC
Q 001520 932 VVIS 935 (1061)
Q Consensus 932 VLLS 935 (1061)
+++|
T Consensus 74 i~TS 77 (269)
T COG0647 74 IVTS 77 (269)
T ss_pred eecH
Confidence 5544
No 98
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=92.46 E-value=0.6 Score=51.49 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=54.2
Q ss_pred cCCCcEEEEecCCccccccc-cc-cc---ccccCCCC----------ChhhHHHHHHHHHHCCCeEEEEccchhhH-HHH
Q 001520 849 KWNTRIVISDVDGTITKSDV-LG-QF---MPLVGVDW----------SQTGVAHLFSAIKENGYQLLFLSARAIVQ-AYH 912 (1061)
Q Consensus 849 ~~~dKIVISDIDGTITKSDv-lG-hI---lP~LGKDW----------TH~GVAkLYskI~~NGYkILYLSARpIgq-A~~ 912 (1061)
.-..++||.|||-||...-. -| ++ .+.-.++| +-||+.+|.+-...||-+|+|+|-|.-.. .+.
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~ 155 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDG 155 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccch
Confidence 34567899999999986543 22 33 23345677 57999999999999999999999998766 788
Q ss_pred HHHHHH
Q 001520 913 TRRFLF 918 (1061)
Q Consensus 913 TR~yL~ 918 (1061)
|.+=|.
T Consensus 156 T~~nLk 161 (274)
T COG2503 156 TIENLK 161 (274)
T ss_pred hHHHHH
Confidence 887775
No 99
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.46 E-value=0.12 Score=56.58 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=35.6
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHC----CCeEEEEccch
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKEN----GYQLLFLSARA 906 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~N----GYkILYLSARp 906 (1061)
+||||+||||..+.. .++|+.+.++.+..+ |+++++||...
T Consensus 2 ~~ifD~DGvL~~g~~------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~ 46 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK------------PIAGASDALRRLNRNQGQLKIPYIFLTNGG 46 (321)
T ss_pred EEEEeCcCceECCcc------------ccHHHHHHHHHHhccccccCCCEEEEecCC
Confidence 589999999998532 279999999999999 99999999764
No 100
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.26 E-value=0.2 Score=52.43 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=33.1
Q ss_pred EEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccc
Q 001520 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSAR 905 (1061)
Q Consensus 855 VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSAR 905 (1061)
||||+||||..++- ..+|+.+.++.++++|++++++|..
T Consensus 1 ~lfD~DGvL~~~~~------------~~~~a~e~i~~l~~~g~~~~~~tN~ 39 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------PIPGAAEALNRLRAKGKPVVFLTNN 39 (236)
T ss_pred CEEeCcCccCcCCc------------cCcCHHHHHHHHHHCCCeEEEEECC
Confidence 68999999998532 2579999999999999999999943
No 101
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=92.14 E-value=0.16 Score=53.80 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=35.2
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHH---HCCCeEEEEccchhhHHHHH
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIK---ENGYQLLFLSARAIVQAYHT 913 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~---~NGYkILYLSARpIgqA~~T 913 (1061)
.++++||+|||++..+ ..+.+.|+.-++ ..+-.|+|+|+|.+.++...
T Consensus 2 ~~ll~sDlD~Tl~~~~--------------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD--------------DEALARLEELLEQQARPEILFVYVTGRSLESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCH--------------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHH
T ss_pred CEEEEEECCCCCcCCC--------------HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHH
Confidence 4689999999999222 256677777666 67899999999999877644
No 102
>PLN02423 phosphomannomutase
Probab=92.00 E-value=0.34 Score=51.34 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=36.5
Q ss_pred CcE-EEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 852 TRI-VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 852 dKI-VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
.|+ +.+|||||++.++- ++ .+...+.+++++++ ++|+-.|+|++ ...+..+
T Consensus 6 ~~~i~~~D~DGTLl~~~~--~i---------~~~~~~ai~~l~~~-i~fviaTGR~~---~~~~~~~ 57 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK--EA---------TPEMLEFMKELRKV-VTVGVVGGSDL---SKISEQL 57 (245)
T ss_pred cceEEEEeccCCCcCCCC--cC---------CHHHHHHHHHHHhC-CEEEEECCcCH---HHHHHHh
Confidence 454 45999999998652 22 15667889999987 99999999944 3444444
No 103
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=91.88 E-value=0.47 Score=54.44 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.+||.+++..|+++||++.-+|+++...+...-+-+. + ..+.+ .++.+.+. . ...+.|+.|..++ +
T Consensus 218 ~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lg-L----~~yFd-~Iv~sddv-~------~~KP~Peifl~A~-~ 283 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIG-I----RGFFS-VIVAAEDV-Y------RGKPDPEMFIYAA-Q 283 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC-C----HHHce-EEEecCcC-C------CCCCCHHHHHHHH-H
Confidence 4688889999999999999999987554443332220 0 11112 23332221 0 1133445565443 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
.+ .+=|. .-+ .||++.+|+.|=+++|+.
T Consensus 284 ~l-gl~Pe--ecl--~IGDS~~DIeAAk~AGm~ 311 (381)
T PLN02575 284 LL-NFIPE--RCI--VFGNSNQTVEAAHDARMK 311 (381)
T ss_pred Hc-CCCcc--cEE--EEcCCHHHHHHHHHcCCE
Confidence 22 22122 233 599999999999999995
No 104
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=91.78 E-value=0.62 Score=52.32 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=53.0
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC-
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG- 930 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G- 930 (1061)
.|+|+||+||||..++- ++ .-.-|||.++...++++|+++.-+|+.+-..+ +..|. ..+|+.=
T Consensus 128 ~~~i~~D~D~TL~~~~~--~v------~irdp~V~EtL~eLkekGikLaIvTNg~Re~v---~~~Le-----~lgL~~yF 191 (303)
T PHA03398 128 PHVIVFDLDSTLITDEE--PV------RIRDPFVYDSLDELKERGCVLVLWSYGNREHV---VHSLK-----ETKLEGYF 191 (303)
T ss_pred ccEEEEecCCCccCCCC--cc------ccCChhHHHHHHHHHHCCCEEEEEcCCChHHH---HHHHH-----HcCCCccc
Confidence 58999999999998642 11 01139999999999999999999996544433 45554 3445421
Q ss_pred -ceecCCCCCCccchhhhhcc
Q 001520 931 -PVVISPDGLFPSLFREVIRR 950 (1061)
Q Consensus 931 -PVLLSPdsLf~AL~REVI~K 950 (1061)
.++.+.+....+-.|+..+.
T Consensus 192 DvII~~g~i~~k~~~~~~~d~ 212 (303)
T PHA03398 192 DIIICGGRKAGEYSRRVIVDN 212 (303)
T ss_pred cEEEECCCcccccccceeecc
Confidence 34454443444433443343
No 105
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=91.34 E-value=0.46 Score=53.25 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=43.5
Q ss_pred EEEecCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHH
Q 001520 845 IYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAY 911 (1061)
Q Consensus 845 IYLW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~ 911 (1061)
.++|.. .++|+||+||||....-.. .-..|||.++...++++|+++.-+|+++-..+.
T Consensus 120 ~~~~~~-~kvIvFDLDgTLi~~~~~v--------~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~ 177 (301)
T TIGR01684 120 SKVFEP-PHVVVFDLDSTLITDEEPV--------RIRDPRIYDSLTELKKRGCILVLWSYGDRDHVV 177 (301)
T ss_pred cccccc-ceEEEEecCCCCcCCCCcc--------ccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH
Confidence 355643 5799999999999854211 112499999999999999999999977655443
No 106
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.20 E-value=0.73 Score=49.82 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=57.2
Q ss_pred CCcEEEEecCCcccccc-cccc----------ccc----------ccCCCC------------ChhhHHHHHHHHHHCCC
Q 001520 851 NTRIVISDVDGTITKSD-VLGQ----------FMP----------LVGVDW------------SQTGVAHLFSAIKENGY 897 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSD-vlGh----------IlP----------~LGKDW------------TH~GVAkLYskI~~NGY 897 (1061)
.+-.||+|||.||..+. .+|+ +.+ .+..+| .++.+..+.+.|++.|.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 55679999999998776 4442 101 011122 47888889999999999
Q ss_pred eEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 898 QLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 898 kILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
++|=||+|+..+...|-..|+. .|..|-.-+
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~---~gi~fs~~~ 129 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKS---LGIDFSSSS 129 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHH---CCCCccccc
Confidence 9999999999999999999874 355555443
No 107
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.14 E-value=0.6 Score=59.36 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCC---CCceecCCCCCCccchhhhhccCchHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALP---DGPVVISPDGLFPSLFREVIRRAPHEFKIA 958 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP---~GPVLLSPdsLf~AL~REVI~KrPeeFKIa 958 (1061)
.||+.++.+.|+++||++..+|+.....++.. |+ ..+|+ --.++.+.+- . ...+.|+.|..
T Consensus 163 ~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~---L~-----~~gl~~~~Fd~iv~~~~~-----~--~~KP~Pe~~~~- 226 (1057)
T PLN02919 163 FPGALELITQCKNKGLKVAVASSADRIKVDAN---LA-----AAGLPLSMFDAIVSADAF-----E--NLKPAPDIFLA- 226 (1057)
T ss_pred CccHHHHHHHHHhCCCeEEEEeCCcHHHHHHH---HH-----HcCCChhHCCEEEECccc-----c--cCCCCHHHHHH-
Confidence 56778888889999999999999766555433 32 11222 0123322211 1 12345567754
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+++.+. +-|. .-+ .+|++..|+.|=+++|+.
T Consensus 227 a~~~lg-v~p~--e~v--~IgDs~~Di~AA~~aGm~ 257 (1057)
T PLN02919 227 AAKILG-VPTS--ECV--VIEDALAGVQAARAAGMR 257 (1057)
T ss_pred HHHHcC-cCcc--cEE--EEcCCHHHHHHHHHcCCE
Confidence 344332 2232 234 499999999999999984
No 108
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=91.08 E-value=1.6 Score=48.01 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCcEEEEecCCccccccccccccc-ccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMP-LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP-~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~ 929 (1061)
.-|+||.|.|+||.. .++|--.+ .+...-.++|+.++...+++.|+++--+|..+.. .++..|+. .-.|.
T Consensus 2 ~~k~~v~DlDnTlw~-gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~---~a~~~l~~----~~~~~- 72 (320)
T TIGR01686 2 ALKVLVLDLDNTLWG-GVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDED---DAKKVFER----RKDFI- 72 (320)
T ss_pred CeEEEEEcCCCCCCC-CEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH---HHHHHHHh----Ccccc-
Confidence 358999999999995 33331111 1111124899999999999999999999998663 44555531 10111
Q ss_pred CceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 930 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 930 GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
++ + ..|..+. +..+| |-+.+..|+..+.-...-++ -+|++..|+.+-++++.
T Consensus 73 ---~~-~-~~f~~~~---~~~~p---k~~~i~~~~~~l~i~~~~~v-fidD~~~d~~~~~~~lp 124 (320)
T TIGR01686 73 ---LQ-A-EDFDARS---INWGP---KSESLRKIAKKLNLGTDSFL-FIDDNPAERANVKITLP 124 (320)
T ss_pred ---Cc-H-HHeeEEE---EecCc---hHHHHHHHHHHhCCCcCcEE-EECCCHHHHHHHHHHCC
Confidence 01 1 1222221 12234 33333333333322112233 58999999999888654
No 109
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=90.20 E-value=0.36 Score=49.82 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=32.0
Q ss_pred EEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHH
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAY 911 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~ 911 (1061)
+|++|+|||++.++- .+. ...++.+ .+++|.+|+.+|+|+.....
T Consensus 1 li~~DlDgTLl~~~~--~~~----------~~~~~~~-~~~~gi~~viaTGR~~~~v~ 45 (236)
T TIGR02471 1 LIITDLDNTLLGDDE--GLA----------SFVELLR-GSGDAVGFGIATGRSVESAK 45 (236)
T ss_pred CeEEeccccccCCHH--HHH----------HHHHHHH-hcCCCceEEEEeCCCHHHHH
Confidence 478999999998542 111 1225555 48889999999999986543
No 110
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=90.14 E-value=0.29 Score=48.97 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=71.1
Q ss_pred cEEEEecCCccccccccccc------cc-ccC------CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHh
Q 001520 853 RIVISDVDGTITKSDVLGQF------MP-LVG------VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFT 919 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhI------lP-~LG------KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~ 919 (1061)
+.+|.|+|+||-.|...--. .+ ..+ .=+-+||+.++...++++ |.|+-.|+-+-..|+..-+.|.
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld- 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD- 79 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC-
Confidence 57999999999987432100 00 001 013479999999999998 9999999988777777766662
Q ss_pred cccCCcCCCCC-ceecCCCCCCccchhhhhc-cCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCc
Q 001520 920 LKQDGKALPDG-PVVISPDGLFPSLFREVIR-RAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGK 997 (1061)
Q Consensus 920 i~Q~g~~LP~G-PVLLSPdsLf~AL~REVI~-KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sR 997 (1061)
|.+ ++ -..+.|+-.. .++. ++++|..+-....+.+ -+||+..|+.+..+.||+...
T Consensus 80 --------p~~~~f-------~~~l~r~~~~~~~~~-----~~K~L~~l~~~~~~vI--iVDD~~~~~~~~~~NgI~i~~ 137 (162)
T TIGR02251 80 --------RGGKVI-------SRRLYRESCVFTNGK-----YVKDLSLVGKDLSKVI--IIDNSPYSYSLQPDNAIPIKS 137 (162)
T ss_pred --------cCCCEE-------eEEEEccccEEeCCC-----EEeEchhcCCChhhEE--EEeCChhhhccCccCEeecCC
Confidence 222 11 0112232211 1222 2223332211112233 488899888888888877543
No 111
>PLN02382 probable sucrose-phosphatase
Probab=89.70 E-value=0.51 Score=54.12 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=38.5
Q ss_pred CcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
..+|+||+|||+..++-- +..+-.-...++.++.++|-.|++.|+|+...+...+.-+
T Consensus 9 ~~lI~sDLDGTLL~~~~~--------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~ 66 (413)
T PLN02382 9 RLMIVSDLDHTMVDHHDP--------ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEK 66 (413)
T ss_pred CEEEEEcCCCcCcCCCCc--------cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhC
Confidence 456999999999975210 0112233445566778899999999999877665554433
No 112
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=89.64 E-value=0.61 Score=45.33 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=44.7
Q ss_pred cEEEEecCCcccccccccccc------c-c-cCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 853 RIVISDVDGTITKSDVLGQFM------P-L-VGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIl------P-~-LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
|++|.|+||||..+......- . . -..=+.+||+.+|...+.+. |.++-.|+.....+...-.+|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 689999999999877654220 0 0 01122479999999999555 999999999988888888888
No 113
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.80 E-value=0.42 Score=48.33 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhh----HHHHHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIV----QAYHTRRFLF 918 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIg----qA~~TR~yL~ 918 (1061)
+.+|+.+.+++|.+.||.++|+|+|+.. .+..|++||.
T Consensus 74 p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~ 115 (191)
T PF06941_consen 74 PIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLE 115 (191)
T ss_dssp B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHH
Confidence 5789999999999999999999999887 6889999996
No 114
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=87.92 E-value=2.5 Score=42.16 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
..+|+.++.+.++++||++..+|+.+... ++.+|+.+. -..+.+ .++.+.+. .+ ..+.|+.|..++
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~~~~---~~~~l~~~~--l~~~f~-~~~~~~~~-----~~--~Kp~p~~~~~~~- 151 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKPTPL---ARPLLELLG--LAKYFS-VLIGGDSL-----AQ--RKPHPDPLLLAA- 151 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHcC--cHhhCc-EEEecCCC-----CC--CCCChHHHHHHH-
Confidence 46899999999999999999999976543 444553210 011222 22222211 01 123344554333
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
..+.-...-. ..+|++.+|+.+-+++||+.
T Consensus 152 ----~~~~~~~~~~-~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 152 ----ERLGVAPQQM-VYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred ----HHcCCChhHe-EEeCCCHHHHHHHHHCCCeE
Confidence 2222111112 25999999999999999975
No 115
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=87.72 E-value=3.3 Score=42.89 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=50.9
Q ss_pred EEEecCCcccccccccc--c-ccccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccC-C
Q 001520 855 VISDVDGTITKSDVLGQ--F-MPLVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQD-G 924 (1061)
Q Consensus 855 VISDIDGTITKSDvlGh--I-lP~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~-g 924 (1061)
.+-|.+|+++.+|..|. + +=..-.+|+ .+..+++|..+++.|.+|+-||.-+. ...++|+..+++. +
T Consensus 9 ~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~---~~~~~~~~~i~~~~~ 85 (203)
T cd03016 9 EADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV---ESHIKWIEDIEEYTG 85 (203)
T ss_pred EEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH---HHHHHHHhhHHHhcC
Confidence 34466788887777773 1 112344664 56788899999999999999987653 4555677655442 2
Q ss_pred cCCCCCceecCCC
Q 001520 925 KALPDGPVVISPD 937 (1061)
Q Consensus 925 ~~LP~GPVLLSPd 937 (1061)
..+| -|++.-++
T Consensus 86 ~~~~-fpil~D~~ 97 (203)
T cd03016 86 VEIP-FPIIADPD 97 (203)
T ss_pred CCCc-eeEEECch
Confidence 3454 56766553
No 116
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=86.99 E-value=1.8 Score=45.18 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=19.1
Q ss_pred ecCCC-chhHHhHhhcCCCCCcEEEECCC
Q 001520 977 GFGNR-DTDEISYLKVGIPRGKIFIINPK 1004 (1061)
Q Consensus 977 GFGNR-~TDv~AYraVGIP~sRIFiINpk 1004 (1061)
-+|++ .+|+.+=+++|+.. |++ +..
T Consensus 185 ~VGD~~~~Di~~A~~aG~~~--i~v-~~~ 210 (238)
T PRK10748 185 HVGDDLTTDVAGAIRCGMQA--CWI-NPE 210 (238)
T ss_pred EEcCCcHHHHHHHHHCCCeE--EEE-cCC
Confidence 48888 59999999999975 544 443
No 117
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=86.53 E-value=2.1 Score=45.89 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=77.0
Q ss_pred CCcEEEEecCCccccccc---ccc--ccc-------------ccCCCCChhh-----HHHHHHHHHHCCCeEEEEccchh
Q 001520 851 NTRIVISDVDGTITKSDV---LGQ--FMP-------------LVGVDWSQTG-----VAHLFSAIKENGYQLLFLSARAI 907 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDv---lGh--IlP-------------~LGKDWTH~G-----VAkLYskI~~NGYkILYLSARpI 907 (1061)
.+-.|-||||+|+.-|-- .|+ +.| .+-..|-.-. +.+|-.+=.+.|-+|+|+|+|.-
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~ 141 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTP 141 (237)
T ss_pred CCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 345689999999986642 121 233 2344453332 33555667788999999999988
Q ss_pred hHHHHHHHHHHhcccCCcCC-CCCceecCCCCCCccchhhhhccCchH-HHHHHHHHHHhhCCCCCCCEEEecCCCchhH
Q 001520 908 VQAYHTRRFLFTLKQDGKAL-PDGPVVISPDGLFPSLFREVIRRAPHE-FKIACLEDIKALFPSDCNPFYAGFGNRDTDE 985 (1061)
Q Consensus 908 gqA~~TR~yL~~i~Q~g~~L-P~GPVLLSPdsLf~AL~REVI~KrPee-FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv 985 (1061)
+-.+.+-.-|. +...+ -+-||.+.-|+ .+|.. -|..+|. .- ..-++ ||+.++|+
T Consensus 142 gk~d~vsk~La----k~F~i~~m~pv~f~Gdk-----------~k~~qy~Kt~~i~---~~----~~~Ih--YGDSD~Di 197 (237)
T COG3700 142 GKTDTVSKTLA----KNFHITNMNPVIFAGDK-----------PKPGQYTKTQWIQ---DK----NIRIH--YGDSDNDI 197 (237)
T ss_pred CcccccchhHH----hhcccCCCcceeeccCC-----------CCcccccccHHHH---hc----CceEE--ecCCchhh
Confidence 87777666664 22222 12344443321 13443 3555544 22 12333 89999999
Q ss_pred HhHhhcCCCCCcEE
Q 001520 986 ISYLKVGIPRGKIF 999 (1061)
Q Consensus 986 ~AYraVGIP~sRIF 999 (1061)
.|-+.+|+-.=||.
T Consensus 198 ~AAkeaG~RgIRil 211 (237)
T COG3700 198 TAAKEAGARGIRIL 211 (237)
T ss_pred hHHHhcCccceeEE
Confidence 99999999888873
No 118
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=86.50 E-value=1.2 Score=54.09 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHC-CCeEEEEccchhhHHHHHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKEN-GYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~N-GYkILYLSARpIgqA~~TR~yL~ 918 (1061)
...+++++|+||||+..+-. | ...-+++.+.+..+++.+. |+.++.+|+|+... .+.|+.
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~----~--~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~---l~~~~~ 550 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD----P--ELAVPDKELRDLLRRLAADPNTDVAIISGRDRDT---LERWFG 550 (726)
T ss_pred ccceEEEEecCccccCCCCC----c--ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHH---HHHHhC
Confidence 34689999999999963211 1 1123468899999999995 99999999998543 345553
No 119
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=86.42 E-value=1.3 Score=46.55 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHC-CCeEEEEccchh
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKEN-GYQLLFLSARAI 907 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~N-GYkILYLSARpI 907 (1061)
..+++++|+||||+... +.-....+.+++.++...|.+. +..+..+|+|++
T Consensus 2 ~~~~l~lD~DGTL~~~~------~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV------PDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred CcEEEEEecCccccCCc------CCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 34679999999999621 1111223468899999888776 466779999965
No 120
>PLN03017 trehalose-phosphatase
Probab=83.43 E-value=2 Score=49.32 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=40.3
Q ss_pred CCCcEEEEecCCcccccccccccccccC---CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVG---VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHT 913 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LG---KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~T 913 (1061)
....+|++|+||||+- .+. .....+...+...+++ +|+++.-+|+|++......
T Consensus 109 ~k~~llflD~DGTL~P---------iv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 109 GKQIVMFLDYDGTLSP---------IVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred CCCeEEEEecCCcCcC---------CcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHh
Confidence 3456788999999991 111 1134588889999999 8899999999998765544
No 121
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=83.36 E-value=1.8 Score=41.68 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.4
Q ss_pred EEEEecCCcccccccc
Q 001520 854 IVISDVDGTITKSDVL 869 (1061)
Q Consensus 854 IVISDIDGTITKSDvl 869 (1061)
+||||+||||..++-.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4899999999998653
No 122
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=83.18 E-value=3.9 Score=37.32 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=49.6
Q ss_pred EEEecCC-ccccccccccc--ccccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc
Q 001520 855 VISDVDG-TITKSDVLGQF--MPLVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK 925 (1061)
Q Consensus 855 VISDIDG-TITKSDvlGhI--lP~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~ 925 (1061)
..-|+|| +++.+++.|.. +-.....|. .+...+++.+++++|++|+-+|.-+.. .++.|++. +
T Consensus 9 ~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~~~~-----~ 80 (124)
T PF00578_consen 9 TLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE---EIKQFLEE-----Y 80 (124)
T ss_dssp EEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHHHHH-----H
T ss_pred EeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc---chhhhhhh-----h
Confidence 4447885 77888887732 223344474 466788899999999999999986555 66777752 2
Q ss_pred CCCCCceecCCC
Q 001520 926 ALPDGPVVISPD 937 (1061)
Q Consensus 926 ~LP~GPVLLSPd 937 (1061)
+ .+-|++.-++
T Consensus 81 ~-~~~~~~~D~~ 91 (124)
T PF00578_consen 81 G-LPFPVLSDPD 91 (124)
T ss_dssp T-CSSEEEEETT
T ss_pred c-cccccccCcc
Confidence 2 3456666543
No 123
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=83.07 E-value=4.3 Score=41.44 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.||+.++...++++||++.-+|+..-.. ++.+|+.. +-..+.. .++.+. .. ....++|+.|...+ +
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i~S~~~~~~---~~~~l~~~--~l~~~f~-~~~~~~-~~------~~~Kp~~~~~~~~~-~ 159 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGLASASPLHM---LEAVLTMF--DLRDYFD-ALASAE-KL------PYSKPHPEVYLNCA-A 159 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCcHHH---HHHHHHhC--cchhccc-EEEEcc-cC------CCCCCCHHHHHHHH-H
Confidence 5788888899999999999999965443 33333211 0011221 222221 11 01234455554433 1
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEEC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIIN 1002 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiIN 1002 (1061)
.+ .+-|. ..+ .+|++.+|+.+-+++|++. |++-+
T Consensus 160 ~~-~~~~~--~~~--~igDs~~Di~aA~~aG~~~--i~v~~ 193 (222)
T PRK10826 160 KL-GVDPL--TCV--ALEDSFNGMIAAKAARMRS--IVVPA 193 (222)
T ss_pred Hc-CCCHH--HeE--EEcCChhhHHHHHHcCCEE--EEecC
Confidence 11 22111 123 5899999999999999964 55433
No 124
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=81.64 E-value=3.8 Score=38.33 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch--HHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIA 958 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIa 958 (1061)
..+|+.++.+.++++||++.-+|..+-. ..+..|..+.- ..+++ -++.+. +.-..+|+ .|+..
T Consensus 78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~~~---~~~~~l~~~~~--~~~f~-~i~~~~---------~~~~~Kp~~~~~~~~ 142 (176)
T PF13419_consen 78 PYPGVRELLERLKAKGIPLVIVSNGSRE---RIERVLERLGL--DDYFD-EIISSD---------DVGSRKPDPDAYRRA 142 (176)
T ss_dssp ESTTHHHHHHHHHHTTSEEEEEESSEHH---HHHHHHHHTTH--GGGCS-EEEEGG---------GSSSSTTSHHHHHHH
T ss_pred hhhhhhhhhhhcccccceeEEeecCCcc---ccccccccccc--ccccc-cccccc---------hhhhhhhHHHHHHHH
Confidence 5789999999999999999999999744 33344432211 12343 222221 12223453 44433
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+ ++. . + .-+|++..|+.+=+++|++.
T Consensus 143 ~-~~~-~~-~p~-~-~-~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 143 L-EKL-GI-PPE-E-I-LFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp H-HHH-TS-SGG-G-E-EEEESSHHHHHHHHHTTSEE
T ss_pred H-HHc-CC-Ccc-e-E-EEEeCCHHHHHHHHHcCCeE
Confidence 2 222 22 221 2 2 25899999999999999864
No 125
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=81.50 E-value=9.5 Score=38.41 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC-CceecCCCCCCccchhhhhccCchHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD-GPVVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~-GPVLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
..+|+.++...+++.||++..+|+...... +.+|. ..+|.. -..+++.+.. ....++|+.|+..
T Consensus 94 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~---~~~l~-----~~~l~~~f~~~~~~~~~------~~~kp~~~~~~~~- 158 (226)
T PRK13222 94 LYPGVKETLAALKAAGYPLAVVTNKPTPFV---APLLE-----ALGIADYFSVVIGGDSL------PNKKPDPAPLLLA- 158 (226)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHH---HHHHH-----HcCCccCccEEEcCCCC------CCCCcChHHHHHH-
Confidence 468899999999999999999999875433 34443 122221 0112221110 0112234444433
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
...+.......+ .+|++.+|+.+=+++|++.
T Consensus 159 ----~~~~~~~~~~~i-~igD~~~Di~~a~~~g~~~ 189 (226)
T PRK13222 159 ----CEKLGLDPEEML-FVGDSRNDIQAARAAGCPS 189 (226)
T ss_pred ----HHHcCCChhheE-EECCCHHHHHHHHHCCCcE
Confidence 222222112233 5999999999999999964
No 126
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=80.11 E-value=11 Score=42.17 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCcee-----cCCCCCCccchhhhhccCchH-
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVV-----ISPDGLFPSLFREVIRRAPHE- 954 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVL-----LSPdsLf~AL~REVI~KrPee- 954 (1061)
..||+.+|++.++++|+++.-+||-.- ..++..|+.+ +..-|.-+++ .+.++.+..+.-.+ .+.
T Consensus 122 l~pG~~efl~~L~~~GIpv~IvS~G~~---~~Ie~vL~~l---gl~~~~~~IvSN~L~f~~dGvltG~~~P~----i~~~ 191 (277)
T TIGR01544 122 LKDGYENFFDKLQQHSIPVFIFSAGIG---NVLEEVLRQA---GVYHPNVKVVSNFMDFDEDGVLKGFKGPL----IHTF 191 (277)
T ss_pred cCcCHHHHHHHHHHCCCcEEEEeCCcH---HHHHHHHHHc---CCCCcCceEEeeeEEECCCCeEeCCCCCc----cccc
Confidence 469999999999999999999998554 4444445411 2111333441 22333222221111 111
Q ss_pred HHHHH-HHHHHhhCC--CCCCCEEEecCCCchhHHhHhhcCCCC-CcEEEECCCCceeeecccCCcchhhhhhhc
Q 001520 955 FKIAC-LEDIKALFP--SDCNPFYAGFGNRDTDEISYLKVGIPR-GKIFIINPKGEVVVNHRVDSKTYSSIHALV 1025 (1061)
Q Consensus 955 FKIac-L~dI~~LFP--~~~nPFyAGFGNR~TDv~AYraVGIP~-sRIFiINpkGel~~e~~~~~sSY~sL~elV 1025 (1061)
-|-+. +...+..|. ......+ .+|+..+|+.| +-|||. ++|..|+= |.......-..|....|+|
T Consensus 192 ~K~~~v~~~~~~~~~~~~~~~~vI-~vGDs~~Dl~m--a~g~~~~~~~l~igf---ln~~~e~~l~~y~~~~Div 260 (277)
T TIGR01544 192 NKNHDVALRNTEYFNQLKDRSNII-LLGDSQGDLRM--ADGVANVEHILKIGY---LNDRVDELLEKYMDSYDIV 260 (277)
T ss_pred ccHHHHHHHHHHHhCccCCcceEE-EECcChhhhhH--hcCCCcccceEEEEe---cccCHHHHHHHHHHhCCEE
Confidence 24443 323444443 1122233 69999999998 779965 56655521 1101001136787777776
No 127
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.96 E-value=4.6 Score=44.53 Aligned_cols=55 Identities=18% Similarity=0.407 Sum_probs=41.1
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
..++|-.|||||+.. -|.+| .-++..|..+++.||+|+.+|+...--.-..++-|
T Consensus 6 ~~~lIFtDlD~TLl~----------~~ye~--~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l 60 (274)
T COG3769 6 MPLLIFTDLDGTLLP----------HSYEW--QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSL 60 (274)
T ss_pred cceEEEEcccCcccC----------CCCCC--CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhc
Confidence 456788899999875 23466 45678899999999999999998765444444444
No 128
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=79.52 E-value=3 Score=44.28 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=45.7
Q ss_pred CeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEE
Q 001520 897 YQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYA 976 (1061)
Q Consensus 897 YkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyA 976 (1061)
.+++|+|||.--+...|..||. ...+| .++++ ++.. ..|++|.+...--| +|-
T Consensus 88 ~~L~~itar~~dl~~iT~~~l~-----~q~ih-------~~~l~------i~g~---h~KV~~vrth~idl-----f~e- 140 (194)
T COG5663 88 HRLIYITARKADLTRITYAWLF-----IQNIH-------YDHLE------IVGL---HHKVEAVRTHNIDL-----FFE- 140 (194)
T ss_pred ceeeeeehhhHHHHHHHHHHHH-----Hhccc-------hhhhh------hhcc---cccchhhHhhccCc-----ccc-
Confidence 8999999999999999999996 45677 34332 2222 12688877654332 121
Q ss_pred ecCCCchhHHhHhhcCCCC
Q 001520 977 GFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 977 GFGNR~TDv~AYraVGIP~ 995 (1061)
++-++=..+=+.+|+|.
T Consensus 141 --d~~~na~~iAk~~~~~v 157 (194)
T COG5663 141 --DSHDNAGQIAKNAGIPV 157 (194)
T ss_pred --ccCchHHHHHHhcCCcE
Confidence 33444466667788875
No 129
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=79.34 E-value=8.6 Score=38.74 Aligned_cols=94 Identities=22% Similarity=0.183 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc--hHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP--HEFKIA 958 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKIa 958 (1061)
..+|+.++.+.++++||++.-+|+.....+...-..+. + ..+.+ -++.+. . +..++| +.|+.+
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~-l----~~~f~-~i~~~~-~--------~~~~KP~~~~~~~~ 140 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALG-L----LPLFD-HVIGSD-E--------VPRPKPAPDIVREA 140 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcC-C----hhhee-eEEecC-c--------CCCCCCChHHHHHH
Confidence 35899999999999999999999976554443333221 0 11111 122222 1 112344 344433
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+-| ..-+ -+|++.+|+.+=+++||+.
T Consensus 141 ~-~~~-~~~~--~~~l--~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 141 L-RLL-DVPP--EDAV--MVGDAVTDLASARAAGTAT 171 (205)
T ss_pred H-HHc-CCCh--hheE--EEcCCHHHHHHHHHcCCeE
Confidence 2 222 1111 1234 4899999999999999984
No 130
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=2 Score=46.10 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcc
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLK 921 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~ 921 (1061)
.||.-++|..|++++-+|+-+|| ||--..+.-|.++.
T Consensus 75 dp~fKef~e~ike~di~fiVvSs---Gm~~fI~~lfe~iv 111 (220)
T COG4359 75 DPGFKEFVEWIKEHDIPFIVVSS---GMDPFIYPLFEGIV 111 (220)
T ss_pred CccHHHHHHHHHHcCCCEEEEeC---CCchHHHHHHHhhc
Confidence 46777777778888888888877 55556666666553
No 131
>PRK13599 putative peroxiredoxin; Provisional
Probab=78.78 E-value=14 Score=39.28 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccC-CcCCCCCceecCCC
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQD-GKALPDGPVVISPD 937 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~-g~~LP~GPVLLSPd 937 (1061)
.+..+++|.++++.|.+++-||.-.. ...+.|...+++. ++.+| =|++..++
T Consensus 48 l~~l~~~~~~f~~~gv~vigIS~D~~---~~~~~w~~~i~~~~~~~i~-fPil~D~~ 100 (215)
T PRK13599 48 FVEFARKANDFKELNTELIGLSVDQV---FSHIKWVEWIKDNTNIAIP-FPVIADDL 100 (215)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHhHHHhcCCCCc-eeEEECCC
Confidence 67888999999999999999997653 3344555544442 34454 45666554
No 132
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=77.54 E-value=8.8 Score=39.89 Aligned_cols=130 Identities=19% Similarity=0.144 Sum_probs=65.4
Q ss_pred CCcEEEEecCCccccccccccccc-------------ccCCCC-ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMP-------------LVGVDW-SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRF 916 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP-------------~LGKDW-TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~y 916 (1061)
-+|+||||.|+|+.---.--|+.| .-|..- -+|+|....+.|+.+|++|-..|.-+.. +..|+.
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~A~~~ 79 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DWAREL 79 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HHHHHH
Confidence 368999999999986443334322 123332 3899999999999999999999842211 555666
Q ss_pred HHhcccCCcCCC--CCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 917 LFTLKQDGKALP--DGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 917 L~~i~Q~g~~LP--~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
|.- ..++ .|+..... .+|.. -| |.+. =|+.-++.|+..-...+.-+. =|+|...-+..=+++||.
T Consensus 80 L~~-----l~i~~~~~~~~~~~-~~F~~--~e-I~~g---sK~~Hf~~i~~~tgI~y~eMl-FFDDe~~N~~~v~~lGV~ 146 (169)
T PF12689_consen 80 LKL-----LEIDDADGDGVPLI-EYFDY--LE-IYPG---SKTTHFRRIHRKTGIPYEEML-FFDDESRNIEVVSKLGVT 146 (169)
T ss_dssp HHH-----TT-C-----------CCECE--EE-ESSS----HHHHHHHHHHHH---GGGEE-EEES-HHHHHHHHTTT-E
T ss_pred HHh-----cCCCccccccccch-hhcch--hh-eecC---chHHHHHHHHHhcCCChhHEE-EecCchhcceeeEecCcE
Confidence 642 2333 22222222 33332 23 2222 366666666654333333333 489988888887778886
Q ss_pred C
Q 001520 995 R 995 (1061)
Q Consensus 995 ~ 995 (1061)
+
T Consensus 147 ~ 147 (169)
T PF12689_consen 147 C 147 (169)
T ss_dssp E
T ss_pred E
Confidence 5
No 133
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=77.17 E-value=2.9 Score=42.13 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=13.6
Q ss_pred cEEEEecCCcccccc
Q 001520 853 RIVISDVDGTITKSD 867 (1061)
Q Consensus 853 KIVISDIDGTITKSD 867 (1061)
++||||+||||..+.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 689999999999875
No 134
>PLN02151 trehalose-phosphatase
Probab=75.96 E-value=5.1 Score=46.04 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=39.9
Q ss_pred cCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHH
Q 001520 849 KWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQA 910 (1061)
Q Consensus 849 ~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA 910 (1061)
.....++++|+||||+- |-+.-..-..+++.......|+ +++++..+|+|+....
T Consensus 95 ~~~~~ll~lDyDGTL~P------Iv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l 149 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSP------IVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKV 149 (354)
T ss_pred cCCceEEEEecCccCCC------CCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHH
Confidence 34456789999999993 1122222345789999999998 5689999999987644
No 135
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=75.90 E-value=9.6 Score=37.20 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=40.2
Q ss_pred EecCC-cccccccccccc-cccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchh-----hHHHHHHHHHH
Q 001520 857 SDVDG-TITKSDVLGQFM-PLVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAI-----VQAYHTRRFLF 918 (1061)
Q Consensus 857 SDIDG-TITKSDvlGhIl-P~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpI-----gqA~~TR~yL~ 918 (1061)
-|.|| |++.++..|+.. =..-..|. .+...++|.+++++|..|+-++.... .-....++|++
T Consensus 8 ~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 8 KDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred ECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHH
Confidence 46777 777788888631 11233443 45666999999999999999986322 11345677774
No 136
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=75.43 E-value=5.9 Score=40.14 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC--CceecCCCCCCccchhhhhccCchHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD--GPVVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~--GPVLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
.||+.++...++++|+++.-+|+.+... ++..|+ ..+|.. -.++. .+.. .+ ..++|+.|...+
T Consensus 84 ~~g~~~~l~~L~~~g~~~~i~S~~~~~~---~~~~l~-----~~gl~~~f~~i~~-~~~~----~~--~Kp~p~~~~~~~ 148 (214)
T PRK13288 84 YETVYETLKTLKKQGYKLGIVTTKMRDT---VEMGLK-----LTGLDEFFDVVIT-LDDV----EH--AKPDPEPVLKAL 148 (214)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHH-----HcCChhceeEEEe-cCcC----CC--CCCCcHHHHHHH
Confidence 4788999999999999999999987433 333343 112221 11222 1111 11 123445555433
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+.+ . +++ ..-+| +|++.+|+.|=+++|++.
T Consensus 149 -~~~-~-~~~-~~~~~--iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 149 -ELL-G-AKP-EEALM--VGDNHHDILAGKNAGTKT 178 (214)
T ss_pred -HHc-C-CCH-HHEEE--ECCCHHHHHHHHHCCCeE
Confidence 222 1 111 12344 999999999999999964
No 137
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=74.90 E-value=16 Score=37.06 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
..+|+.++...+++.||++.-+|+.........-+-+. +.. +.-++ .++.+.+. . + ..+.|+.|..++
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~-l~~-~~~f~--~i~~~~~~-~----~--~KP~p~~~~~a~- 155 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG-WTV-GDDVD--AVVCPSDV-A----A--GRPAPDLILRAM- 155 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh-hhh-hccCC--EEEcCCcC-C----C--CCCCHHHHHHHH-
Confidence 35788899999999999999999987665554433331 110 01132 24444321 1 1 133445555432
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+.+ .+=++ ...+| +|++.+|+.+=+++|++.
T Consensus 156 ~~~-~~~~~-~~~~~--igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 156 ELT-GVQDV-QSVAV--AGDTPNDLEAGINAGAGA 186 (220)
T ss_pred HHc-CCCCh-hHeEE--eCCCHHHHHHHHHCCCCe
Confidence 211 11011 22344 889999999999999984
No 138
>PRK13190 putative peroxiredoxin; Provisional
Probab=74.46 E-value=13 Score=38.65 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=46.5
Q ss_pred ecCCccccccccccc--ccccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccC-CcCCC
Q 001520 858 DVDGTITKSDVLGQF--MPLVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQD-GKALP 928 (1061)
Q Consensus 858 DIDGTITKSDvlGhI--lP~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~-g~~LP 928 (1061)
|.+|+++.++..|.. +-..-.+|+ .+..+++|..++++|.+++-+|.-.. ..-++|++.+.+. +..+|
T Consensus 15 ~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~---~~~~~w~~~~~~~~g~~~~ 91 (202)
T PRK13190 15 TTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI---YSHIAWLRDIEERFGIKIP 91 (202)
T ss_pred cCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHhHHHhcCCCce
Confidence 456777777766641 111234554 56788899999999999999987543 2334666544332 22233
Q ss_pred CCceecCCC
Q 001520 929 DGPVVISPD 937 (1061)
Q Consensus 929 ~GPVLLSPd 937 (1061)
-|++.-++
T Consensus 92 -fPll~D~~ 99 (202)
T PRK13190 92 -FPVIADID 99 (202)
T ss_pred -EEEEECCC
Confidence 46776554
No 139
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=74.40 E-value=17 Score=43.44 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=67.8
Q ss_pred EEEEecCCcccccccccccccccC-CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCce
Q 001520 854 IVISDVDGTITKSDVLGQFMPLVG-VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPV 932 (1061)
Q Consensus 854 IVISDIDGTITKSDvlGhIlP~LG-KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPV 932 (1061)
++..+.||++.. .++ +|-..||+.++.+.++++||++.-+|+.+-..+...-+.| +++ +
T Consensus 387 ~~~~~~~~~~~g---------~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l--------gi~---~ 446 (562)
T TIGR01511 387 SVLVAVNGELAG---------VFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL--------GIN---V 446 (562)
T ss_pred EEEEEECCEEEE---------EEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc--------CCc---E
Confidence 344566776643 111 3556799999999999999999999998876665555444 332 1
Q ss_pred ecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 933 VISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 933 LLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
+ . ++ .| +=|.+.++.++.. . .-.+.+|+..+|+.|-+++||.
T Consensus 447 ~-------~----~~---~p-~~K~~~v~~l~~~----~-~~v~~VGDg~nD~~al~~A~vg 488 (562)
T TIGR01511 447 R-------A----EV---LP-DDKAALIKELQEK----G-RVVAMVGDGINDAPALAQADVG 488 (562)
T ss_pred E-------c----cC---Ch-HHHHHHHHHHHHc----C-CEEEEEeCCCccHHHHhhCCEE
Confidence 1 1 11 12 2366777777652 1 2345699999999999999974
No 140
>PRK11587 putative phosphatase; Provisional
Probab=72.26 E-value=14 Score=37.94 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc--hHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKIac 959 (1061)
.||+.++...++++||++..+|+.+.... +..|. ..+...+. .+++.+ ++..++| +.|..++
T Consensus 85 ~pg~~e~L~~L~~~g~~~~ivTn~~~~~~---~~~l~---~~~l~~~~--~i~~~~--------~~~~~KP~p~~~~~~~ 148 (218)
T PRK11587 85 LPGAIALLNHLNKLGIPWAIVTSGSVPVA---SARHK---AAGLPAPE--VFVTAE--------RVKRGKPEPDAYLLGA 148 (218)
T ss_pred CcCHHHHHHHHHHcCCcEEEEcCCCchHH---HHHHH---hcCCCCcc--EEEEHH--------HhcCCCCCcHHHHHHH
Confidence 58899999999999999999999765433 22332 11222221 222221 2223345 4555443
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+.+ .+-|. .-+| +|++..|+.+=+++|++.
T Consensus 149 -~~~-g~~p~--~~l~--igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 149 -QLL-GLAPQ--ECVV--VEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred -HHc-CCCcc--cEEE--EecchhhhHHHHHCCCEE
Confidence 211 22222 2344 899999999999999963
No 141
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=72.21 E-value=13 Score=39.28 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.|||.++...++++||++.-+|+.+...+....+.+. + ..+.+ .++.+.+. . ...+.|+.|..++ +
T Consensus 110 ~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g-l----~~~Fd-~iv~~~~~-~------~~KP~p~~~~~a~-~ 175 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLG-L----SDFFQ-AVIIGSEC-E------HAKPHPDPYLKAL-E 175 (248)
T ss_pred CccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC-C----hhhCc-EEEecCcC-C------CCCCChHHHHHHH-H
Confidence 5688889999999999999999987665544433331 1 11112 23333211 1 0133344444333 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ .+ .+ ..-+| +|++..|+.|=+++||+.
T Consensus 176 ~~-~~-~~-~~~l~--vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 176 VL-KV-SK-DHTFV--FEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred Hh-CC-Ch-hHEEE--EcCCHHHHHHHHHCCCEE
Confidence 22 11 11 12344 999999999999999974
No 142
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=71.36 E-value=2.1 Score=41.97 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=14.0
Q ss_pred CcEEEEecCCcccccc
Q 001520 852 TRIVISDVDGTITKSD 867 (1061)
Q Consensus 852 dKIVISDIDGTITKSD 867 (1061)
-|+||||+||||..|.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4789999999999874
No 143
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=70.92 E-value=7.6 Score=48.99 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=41.9
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHH-HHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAI-KENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI-~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
..+++++|+||||+..... .-.+.+++.+++++| ++.|..++-+|+|+.. ..+.|+.
T Consensus 595 ~~rlI~LDyDGTLlp~~~~--------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~---~L~~~f~ 652 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI--------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRK---TLADWFS 652 (854)
T ss_pred cCeEEEEecCCcccCCccc--------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHH---HHHHHhC
Confidence 5688999999999954321 112347889999987 7779999999999764 3555663
No 144
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=70.78 E-value=2.3 Score=43.04 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.3
Q ss_pred cEEEEecCCcccccc
Q 001520 853 RIVISDVDGTITKSD 867 (1061)
Q Consensus 853 KIVISDIDGTITKSD 867 (1061)
|+||||+||||..|.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 689999999999764
No 145
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=70.76 E-value=27 Score=41.59 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCChhhHHHHHHHHHHCC-CeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHH
Q 001520 878 VDWSQTGVAHLFSAIKENG-YQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFK 956 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NG-YkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFK 956 (1061)
+|-..||+.++.+.++++| |++.-+|+.+...+...-+-+ ++. ..|.. + .| +-|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l--------gi~---------~~f~~----~---~p-~~K 436 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL--------GID---------EVHAE----L---LP-EDK 436 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh--------CCC---------eeecc----C---CH-HHH
Confidence 3566899999999999999 999999999887666655444 232 11211 1 12 246
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
.+.++.++.. ..-.+.+|++.+|+.|-+++||
T Consensus 437 ~~~v~~l~~~-----~~~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 437 LAIVKELQEE-----GGVVAMVGDGINDAPALAAADV 468 (556)
T ss_pred HHHHHHHHHc-----CCEEEEEECChhHHHHHhhCCE
Confidence 6777777753 1245679999999999999985
No 146
>PTZ00056 glutathione peroxidase; Provisional
Probab=70.70 E-value=19 Score=37.67 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=42.3
Q ss_pred EEEecCC-ccccccccccccc-ccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchh-----hHHHHHHHHHH
Q 001520 855 VISDVDG-TITKSDVLGQFMP-LVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAI-----VQAYHTRRFLF 918 (1061)
Q Consensus 855 VISDIDG-TITKSDvlGhIlP-~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpI-----gqA~~TR~yL~ 918 (1061)
-+-|+|| +++.++..|+..- .....|. .|...+||++++++|+.|+-++.... .-....+.|+.
T Consensus 23 ~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~ 99 (199)
T PTZ00056 23 TVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFND 99 (199)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHH
Confidence 3456777 4666777775321 1233553 56788899999999999999986421 22466788885
No 147
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.63 E-value=11 Score=36.67 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=53.5
Q ss_pred CChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHH
Q 001520 880 WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 880 WTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
...|||.++.+.++++||++.-+|++ ...+..|+...- ..+.+ .++.+.+. ....+.|+.|...
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l--~~~f~-~v~~~~~~-------~~~kp~~~~~~~~- 151 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGL--TDYFD-AIVDADEV-------KEGKPHPETFLLA- 151 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcCh--HHHCC-EeeehhhC-------CCCCCChHHHHHH-
Confidence 45789999999999999999999987 223445532111 11222 12222110 0112334455432
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
++.+ .+ ++ ..-+| +|++..|+.+=+++|++
T Consensus 152 ~~~~-~~-~~-~~~v~--IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 152 AELL-GV-SP-NECVV--FEDALAGVQAARAAGMF 181 (185)
T ss_pred HHHc-CC-CH-HHeEE--EeCcHhhHHHHHHCCCe
Confidence 2222 12 11 12344 89999999999999996
No 148
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=69.39 E-value=14 Score=38.45 Aligned_cols=51 Identities=25% Similarity=0.171 Sum_probs=39.2
Q ss_pred EecCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCC--eEEEEccchh
Q 001520 847 LWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGY--QLLFLSARAI 907 (1061)
Q Consensus 847 LW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGY--kILYLSARpI 907 (1061)
|-+.+=|+||+|.|.|||.-+. +-.++-+++.++++++.+- +|+-+|..+.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~----------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE----------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc----------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 3345668899999999997332 3446789999999998864 5999999863
No 149
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=68.86 E-value=21 Score=34.48 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=54.4
Q ss_pred CChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCC---CCCceecCCCCCCccchhhhhccCch--H
Q 001520 880 WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKAL---PDGPVVISPDGLFPSLFREVIRRAPH--E 954 (1061)
Q Consensus 880 WTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~L---P~GPVLLSPdsLf~AL~REVI~KrPe--e 954 (1061)
...||+.++.+.++++||++.-+|+.+... .. .+. ..+| .+. ++.+ .++..++|+ .
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~---~~~-----~~~l~~~f~~-i~~~---------~~~~~~KP~~~~ 145 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AV---LVQ-----ELGLRDLFDV-VIFS---------GDVGRGKPDPDI 145 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HH---HHH-----hcCCHHHCCE-EEEc---------CCCCCCCCCHHH
Confidence 346999999999999999999999977654 21 221 0112 111 2222 123334554 5
Q ss_pred HHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 955 FKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 955 FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
|+..+ +.+ .+ .+ ..-+ -+|++..|+.+=+++|+.
T Consensus 146 ~~~~~-~~~-~~-~~-~~~~--~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 146 YLLAL-KKL-GL-KP-EECL--FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred HHHHH-HHc-CC-Cc-ceEE--EEcCCHHHHHHHHHcCCE
Confidence 55432 222 22 22 1233 489999999999999985
No 150
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=68.27 E-value=40 Score=33.71 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=72.3
Q ss_pred EEEecCC-----ccccccccccc--ccccCCCCC------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcc
Q 001520 855 VISDVDG-----TITKSDVLGQF--MPLVGVDWS------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLK 921 (1061)
Q Consensus 855 VISDIDG-----TITKSDvlGhI--lP~LGKDWT------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~ 921 (1061)
.+.|++| +++.++..|+. +-.....|+ .+...++|.++++.|..|+-+|.-+. ...+.|+....
T Consensus 9 ~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~---~~~~~~~~~~~ 85 (173)
T cd03015 9 KATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH---FSHLAWRNTPR 85 (173)
T ss_pred EeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH---HHHHHHHHhhh
Confidence 4556666 67777776642 111113442 45677889999999999999986543 23445665332
Q ss_pred cC--CcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEE
Q 001520 922 QD--GKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIF 999 (1061)
Q Consensus 922 Q~--g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIF 999 (1061)
.. ..++| -|++.-+++ .+...|.- ++. + .|++...+|
T Consensus 86 ~~~~~~~~~-f~~l~D~~~-----------------------~~~~~~gv----~~~-------~------~~~~~p~~~ 124 (173)
T cd03015 86 KEGGLGKIN-FPLLADPKK-----------------------KISRDYGV----LDE-------E------EGVALRGTF 124 (173)
T ss_pred hhCCccCcc-eeEEECCch-----------------------hHHHHhCC----ccc-------c------CCceeeEEE
Confidence 11 12343 456654432 11112110 000 0 144556899
Q ss_pred EECCCCceeeeccc---CCcchhhhhhhcccc
Q 001520 1000 IINPKGEVVVNHRV---DSKTYSSIHALVHGM 1028 (1061)
Q Consensus 1000 iINpkGel~~e~~~---~~sSY~sL~elVD~~ 1028 (1061)
+||++|.|+..... ....+..|-+.++.+
T Consensus 125 lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 125 IIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred EECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 99999999854421 124566677777665
No 151
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=67.32 E-value=16 Score=36.88 Aligned_cols=91 Identities=13% Similarity=0.270 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH---hcccCCcCCCCCceecCCCCCCccchhhhh--ccCchHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF---TLKQDGKALPDGPVVISPDGLFPSLFREVI--RRAPHEFK 956 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~---~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI--~KrPeeFK 956 (1061)
.|||.++.+.++++||++.-+|..+...... ++. .+. .-+ + -++.+. ++. .+.|+.|+
T Consensus 86 ~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~---~~~~~~~l~---~~f-d-~v~~s~---------~~~~~KP~p~~~~ 148 (199)
T PRK09456 86 RPEVIAIMHKLREQGHRVVVLSNTNRLHTTF---WPEEYPEVR---AAA-D-HIYLSQ---------DLGMRKPEARIYQ 148 (199)
T ss_pred CHHHHHHHHHHHhCCCcEEEEcCCchhhHHH---HHhhchhHH---Hhc-C-EEEEec---------ccCCCCCCHHHHH
Confidence 5899999999999999999999976543322 221 000 001 1 122221 222 33445665
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
.+ ++.+ .+=|. .-+| +|++..|+.+=+++|+..
T Consensus 149 ~~-~~~~-~~~p~--~~l~--vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 149 HV-LQAE-GFSAA--DAVF--FDDNADNIEAANALGITS 181 (199)
T ss_pred HH-HHHc-CCChh--HeEE--eCCCHHHHHHHHHcCCEE
Confidence 43 2322 22122 2344 789999999999999964
No 152
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=67.25 E-value=15 Score=39.26 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCch--HHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIA 958 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe--eFKIa 958 (1061)
..+||.++.+.|+++||++.-+|+.+..........+. ...|. +. + +..|. .++..+|+ .|...
T Consensus 96 lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~-----~~~L~--~~-f--~~~fd----~~~g~KP~p~~y~~i 161 (220)
T TIGR01691 96 LYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSD-----AGNLT--PY-F--SGYFD----TTVGLKTEAQSYVKI 161 (220)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhcc-----ccchh--hh-c--ceEEE----eCcccCCCHHHHHHH
Confidence 46999999999999999999999986654433322220 01111 11 0 11221 12233454 44433
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+ ++ ..-+| +|++..|+.|=+++|+..
T Consensus 162 ~-~~l-gv-~p-~e~lf--VgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 162 A-GQL-GS-PP-REILF--LSDIINELDAARKAGLHT 192 (220)
T ss_pred H-HHh-Cc-Ch-hHEEE--EeCCHHHHHHHHHcCCEE
Confidence 2 222 22 22 12344 889999999999999964
No 153
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=66.89 E-value=12 Score=36.86 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchH-HH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHE-FK 956 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPee-FK 956 (1061)
.|...+|+.++.+.+++.|+++.-+|+-...-+...-..| +|++ .+ .|. ++. .+|+. .-
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l--------gi~~-~~------v~a----~~~-~kP~~k~~ 184 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL--------GIFD-SI------VFA----RVI-GKPEPKIF 184 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT--------TSCS-EE------EEE----SHE-TTTHHHHH
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccc--------cccc-cc------ccc----ccc-ccccchhH
Confidence 4667899999999999999999999998777776666655 2421 00 111 111 35542 22
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVG 992 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVG 992 (1061)
..+++.++. . .. -++.+|+..+|+.|=+++|
T Consensus 185 ~~~i~~l~~--~--~~-~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 185 LRIIKELQV--K--PG-EVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHHHTC--T--GG-GEEEEESSGGHHHHHHHSS
T ss_pred HHHHHHHhc--C--CC-EEEEEccCHHHHHHHHhCc
Confidence 444554441 1 12 3457999999999999886
No 154
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=66.70 E-value=3 Score=40.61 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.0
Q ss_pred cEEEEecCCccccccc
Q 001520 853 RIVISDVDGTITKSDV 868 (1061)
Q Consensus 853 KIVISDIDGTITKSDv 868 (1061)
|+||||+||||..|.-
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 6899999999998753
No 155
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=66.49 E-value=3.2 Score=42.04 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.0
Q ss_pred CcEEEEecCCcccccc
Q 001520 852 TRIVISDVDGTITKSD 867 (1061)
Q Consensus 852 dKIVISDIDGTITKSD 867 (1061)
-|+||||+||||..|.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 4789999999999875
No 156
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=66.47 E-value=57 Score=31.04 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
-+.+.+++.++.+.|.+|+-+|.-+ ....+.|++
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~ 81 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDS---PFSLRAWAE 81 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHH
Confidence 3667788999999999999998754 345777875
No 157
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=66.46 E-value=3 Score=41.91 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=13.6
Q ss_pred CcEEEEecCCcccccc
Q 001520 852 TRIVISDVDGTITKSD 867 (1061)
Q Consensus 852 dKIVISDIDGTITKSD 867 (1061)
-++||||+||||+.+.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 3689999999999763
No 158
>PLN02580 trehalose-phosphatase
Probab=66.40 E-value=11 Score=43.66 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQA 910 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA 910 (1061)
...++++|.||||+- |-+.-..-...+++..+.+.|++. +++.-+|+|+.-..
T Consensus 118 k~~~LfLDyDGTLaP------Iv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L 170 (384)
T PLN02580 118 KKIALFLDYDGTLSP------IVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKV 170 (384)
T ss_pred CCeEEEEecCCccCC------CCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHH
Confidence 345688899999984 223333445578999999999988 58999999987543
No 159
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=66.19 E-value=8.4 Score=40.26 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=28.7
Q ss_pred EEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCC-CeEEEEccchhhH
Q 001520 856 ISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENG-YQLLFLSARAIVQ 909 (1061)
Q Consensus 856 ISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NG-YkILYLSARpIgq 909 (1061)
.+|+||||+.- .+.-..-.+++++..+.++|.+.. ..+.-+|+|+...
T Consensus 1 ~lDyDGTL~p~------~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPI------VDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCC------CCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 47999999962 222333456799999999999885 4788889998876
No 160
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=65.46 E-value=12 Score=41.63 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=41.3
Q ss_pred cCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCC-eEEEEccchhh
Q 001520 849 KWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGY-QLLFLSARAIV 908 (1061)
Q Consensus 849 ~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGY-kILYLSARpIg 908 (1061)
+...+.+++|.|||||. +.+.--..++-++...+.++|....- .+..+|+|..-
T Consensus 15 ~a~~~~~~lDyDGTl~~------i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~ 69 (266)
T COG1877 15 NARKRLLFLDYDGTLTE------IVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLA 69 (266)
T ss_pred cccceEEEEeccccccc------cccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHH
Confidence 45678899999999986 44455556677899999999998843 46778999753
No 161
>PRK11587 putative phosphatase; Provisional
Probab=64.32 E-value=3.7 Score=42.03 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.1
Q ss_pred CcEEEEecCCcccccc
Q 001520 852 TRIVISDVDGTITKSD 867 (1061)
Q Consensus 852 dKIVISDIDGTITKSD 867 (1061)
-|.||||+||||+.|.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 3789999999999984
No 162
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=63.94 E-value=50 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
.+.+.+++.++.+.|..|+-+|... ....++|++
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~ 76 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAE 76 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHH
Confidence 4567788889999999999999754 355677875
No 163
>PRK13191 putative peroxiredoxin; Provisional
Probab=63.90 E-value=36 Score=36.15 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccC-CcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQD-GKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~-g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
.+..+++|..+++.|.+++=+|.-+. ...+.|...+++. ++.+| -|++.-+++
T Consensus 53 l~~l~~~~~ef~~~g~~VigvS~Ds~---~~h~aw~~~~~~~~~~~i~-fPllsD~~~---------------------- 106 (215)
T PRK13191 53 FYSFAKKYEEFKKLNTELIGLSVDSN---ISHIEWVMWIEKNLKVEVP-FPIIADPMG---------------------- 106 (215)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHhhHHHhcCCCCc-eEEEECCch----------------------
Confidence 57788899999999999999997654 3344565555432 34454 466665532
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeeccc---CCcchhhhhhhcccc
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRV---DSKTYSSIHALVHGM 1028 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~---~~sSY~sL~elVD~~ 1028 (1061)
.+...|.- +... ..|.+.--.|+||++|.|+..... ....+..+-..+|.+
T Consensus 107 -~ia~~ygv--------~~~~--------~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 107 -NVAKRLGM--------IHAE--------SSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred -HHHHHcCC--------cccc--------cCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 22223211 0000 013455679999999999864321 124666666666654
No 164
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=63.66 E-value=32 Score=33.71 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=38.1
Q ss_pred EecCC-ccccccccccc-ccccCCCCC-----hhhHHHHHHHHHHCCCeEEEEccchh-----hHHHHHHHHHH
Q 001520 857 SDVDG-TITKSDVLGQF-MPLVGVDWS-----QTGVAHLFSAIKENGYQLLFLSARAI-----VQAYHTRRFLF 918 (1061)
Q Consensus 857 SDIDG-TITKSDvlGhI-lP~LGKDWT-----H~GVAkLYskI~~NGYkILYLSARpI-----gqA~~TR~yL~ 918 (1061)
-|+|| |++.++..|+. +=.....|. -|...+||++++++|..|+-++.... .-....+.|++
T Consensus 8 ~d~~G~~v~l~~~~Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~ 81 (152)
T cd00340 8 KDIDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCE 81 (152)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEcCCCCchHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHH
Confidence 45666 45666666642 112233442 35677899999889999999986431 22356777774
No 165
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=63.37 E-value=17 Score=34.21 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchh---hHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAI---VQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpI---gqA~~TR~yL~ 918 (1061)
.+.+.+||+++++.|..++.++.-.. .-....+.|++
T Consensus 42 ~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~ 81 (126)
T cd03012 42 LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVL 81 (126)
T ss_pred HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHH
Confidence 46677888888888888888875221 12345555664
No 166
>PTZ00256 glutathione peroxidase; Provisional
Probab=62.63 E-value=36 Score=34.73 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=38.1
Q ss_pred ecCC-cccccccccccc-ccc-CCCCC------hhhHHHHHHHHHHCCCeEEEEccchh-----hHHHHHHHHHH
Q 001520 858 DVDG-TITKSDVLGQFM-PLV-GVDWS------QTGVAHLFSAIKENGYQLLFLSARAI-----VQAYHTRRFLF 918 (1061)
Q Consensus 858 DIDG-TITKSDvlGhIl-P~L-GKDWT------H~GVAkLYskI~~NGYkILYLSARpI-----gqA~~TR~yL~ 918 (1061)
|+|| |++.++..|+.. =.+ -..|. .|.+.+||.+++++|..|+-++.-.. .-....+.|+.
T Consensus 27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~ 101 (183)
T PTZ00256 27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQ 101 (183)
T ss_pred cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHH
Confidence 5666 466667666521 011 24553 46788899999999999999985311 12355677763
No 167
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=62.28 E-value=25 Score=44.97 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=70.1
Q ss_pred ccC-CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCC---------cCCC-------C--CceecC
Q 001520 875 LVG-VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDG---------KALP-------D--GPVVIS 935 (1061)
Q Consensus 875 ~LG-KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g---------~~LP-------~--GPVLLS 935 (1061)
++| .|..+++|.+..+.++++|.+++.+|+|....+..+..=+.-+..+. ..++ + ..++.-
T Consensus 562 li~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G 641 (997)
T TIGR01106 562 LISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHG 641 (997)
T ss_pred EEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEh
Confidence 444 58889999999999999999999999998877765554442111000 0000 0 011111
Q ss_pred CCCCCccch----hh--------hhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhh--cCCC
Q 001520 936 PDGLFPSLF----RE--------VIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLK--VGIP 994 (1061)
Q Consensus 936 PdsLf~AL~----RE--------VI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYra--VGIP 994 (1061)
+ -+..+. .+ |..|-..+-|..+++.++.. .-.+|..|+..||+-|-++ |||.
T Consensus 642 ~--~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~-----g~vv~~~GDG~ND~paLk~AdVGia 707 (997)
T TIGR01106 642 S--DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQ-----GAIVAVTGDGVNDSPALKKADIGVA 707 (997)
T ss_pred H--HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHhhCCccee
Confidence 0 011110 11 33443446788888888864 2478899999999999886 4664
No 168
>PRK10671 copA copper exporting ATPase; Provisional
Probab=61.44 E-value=29 Score=43.33 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
.|-.++|+.++...+++.||+++-+|+.....+....+.+ +++. .+.. + .|+ -|.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l--------gi~~---------~~~~----~---~p~-~K~ 702 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA--------GIDE---------VIAG----V---LPD-GKA 702 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc--------CCCE---------EEeC----C---CHH-HHH
Confidence 4666899999999999999999999998776665554444 3331 1111 1 243 388
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
++++.++.. . .-.+.+|+..+|+.|-+++||
T Consensus 703 ~~i~~l~~~----~-~~v~~vGDg~nD~~al~~Agv 733 (834)
T PRK10671 703 EAIKRLQSQ----G-RQVAMVGDGINDAPALAQADV 733 (834)
T ss_pred HHHHHHhhc----C-CEEEEEeCCHHHHHHHHhCCe
Confidence 888888754 1 234579999999999999988
No 169
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=61.00 E-value=21 Score=36.23 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=49.7
Q ss_pred CCCcEEEEecCCccccccccccccc--------------------ccC----CCCChhhHHHHHHHHHHCCCeEEEEccc
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMP--------------------LVG----VDWSQTGVAHLFSAIKENGYQLLFLSAR 905 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP--------------------~LG----KDWTH~GVAkLYskI~~NGYkILYLSAR 905 (1061)
..-+++|.|+|.||..|-....... .++ .-...||+.++...++++ |++.-.|+-
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence 3456799999999999876532110 001 011369999999999965 999999999
Q ss_pred hhhHHHHHHHHH
Q 001520 906 AIVQAYHTRRFL 917 (1061)
Q Consensus 906 pIgqA~~TR~yL 917 (1061)
+-..|+..-++|
T Consensus 83 ~~~yA~~vl~~l 94 (156)
T TIGR02250 83 TRAYAQAIAKLI 94 (156)
T ss_pred cHHHHHHHHHHh
Confidence 999888888887
No 170
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=60.59 E-value=4.1 Score=40.96 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=13.0
Q ss_pred cEEEEecCCcccccc
Q 001520 853 RIVISDVDGTITKSD 867 (1061)
Q Consensus 853 KIVISDIDGTITKSD 867 (1061)
.+||||+||||..|.
T Consensus 1 ~~viFD~DGTLiDs~ 15 (197)
T TIGR01548 1 QALVLDMDGVMADVS 15 (197)
T ss_pred CceEEecCceEEech
Confidence 368999999999875
No 171
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=60.13 E-value=38 Score=34.27 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc-CCCCCceecCCCCCCccchhhhhccCc--hHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK-ALPDGPVVISPDGLFPSLFREVIRRAP--HEFKI 957 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~-~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKI 957 (1061)
..||+.++...++++||++.-+|+.+-.. .+..|+.+ +. .+-++ ++++.+ +...+| +.|+.
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~---~~~~l~~~---~l~~~f~~-i~~~~~---------~~~~KP~~~~~~~ 158 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDGLPVK---QWEKLERL---GVRDFFDA-VITSEE---------EGVEKPHPKIFYA 158 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHhC---ChHHhccE-EEEecc---------CCCCCCCHHHHHH
Confidence 36899999999999999999999986432 23334311 11 11122 333321 222344 45554
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIPR 995 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP~ 995 (1061)
++ +.+ . +++ ..-+ -+|++. +|+.+=+++|+..
T Consensus 159 ~~-~~~-~-~~~-~~~~--~igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 159 AL-KRL-G-VKP-EEAV--MVGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred HH-HHc-C-CCh-hhEE--EECCChHHHHHHHHHCCCEE
Confidence 43 221 1 122 1233 489997 8999999999976
No 172
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=59.60 E-value=4 Score=40.65 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=14.0
Q ss_pred EEEEecCCcccccccc
Q 001520 854 IVISDVDGTITKSDVL 869 (1061)
Q Consensus 854 IVISDIDGTITKSDvl 869 (1061)
+++||+||||+..|..
T Consensus 1 ~a~FD~DgTL~~~~s~ 16 (202)
T TIGR01490 1 LAFFDFDGTLTAKDTL 16 (202)
T ss_pred CeEEccCCCCCCCchH
Confidence 4799999999998865
No 173
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=58.62 E-value=5.2 Score=42.17 Aligned_cols=16 Identities=50% Similarity=0.694 Sum_probs=14.1
Q ss_pred CcEEEEecCCcccccc
Q 001520 852 TRIVISDVDGTITKSD 867 (1061)
Q Consensus 852 dKIVISDIDGTITKSD 867 (1061)
-|.||||+||||..|.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 3789999999999875
No 174
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=58.04 E-value=35 Score=35.44 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=69.6
Q ss_pred EecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCC
Q 001520 857 SDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISP 936 (1061)
Q Consensus 857 SDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSP 936 (1061)
-++++||+. -|+++ +-|.+-.+.+++. -.|+--|+--.+--....+++ ++| -
T Consensus 19 ~~v~~tiat---gGklf---------~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~--------gi~-------~ 70 (152)
T COG4087 19 GKVLYTIAT---GGKLF---------SEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV--------GIP-------V 70 (152)
T ss_pred ceEEEEEcc---CcEEc---------HhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc--------CCc-------e
Confidence 468899997 56666 4555666677777 777777776555444444443 466 2
Q ss_pred CCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCC
Q 001520 937 DGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKG 1005 (1061)
Q Consensus 937 dsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkG 1005 (1061)
.+.|. ....+-|...+++|+.- +-+..+.||..||+.|-+++.+- |-+|.+.|
T Consensus 71 ~rv~a--------~a~~e~K~~ii~eLkk~-----~~k~vmVGnGaND~laLr~ADlG---I~tiq~e~ 123 (152)
T COG4087 71 ERVFA--------GADPEMKAKIIRELKKR-----YEKVVMVGNGANDILALREADLG---ICTIQQEG 123 (152)
T ss_pred eeeec--------ccCHHHHHHHHHHhcCC-----CcEEEEecCCcchHHHhhhcccc---eEEeccCC
Confidence 33332 12235688888888862 36778999999999999998664 45666633
No 175
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=57.89 E-value=38 Score=43.05 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=68.5
Q ss_pred ccC-CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc----eecCCCCCCccchh----
Q 001520 875 LVG-VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP----VVISPDGLFPSLFR---- 945 (1061)
Q Consensus 875 ~LG-KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP----VLLSPdsLf~AL~R---- 945 (1061)
++| .|..++++.+....+++.|.+++.+|+....-|..+..-+ |..-+... .+..+ .+..+..
T Consensus 531 l~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~------gi~~~~~~v~~~~~~g~--~l~~~~~~~~~ 602 (917)
T TIGR01116 531 VVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI------GIFSPDEDVTFKSFTGR--EFDEMGPAKQR 602 (917)
T ss_pred EeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc------CCCCCCccccceeeeHH--HHhhCCHHHHH
Confidence 444 5888999999999999999999999999776666666555 21111111 11100 0111100
Q ss_pred ------hhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 946 ------EVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 946 ------EVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
-|..|-..+.|..+++.++.. .-.++..|+..||+.|-++++|-
T Consensus 603 ~~~~~~~v~ar~~P~~K~~iV~~lq~~-----g~~va~iGDG~ND~~alk~AdVG 652 (917)
T TIGR01116 603 AACRSAVLFSRVEPSHKSELVELLQEQ-----GEIVAMTGDGVNDAPALKKADIG 652 (917)
T ss_pred HhhhcCeEEEecCHHHHHHHHHHHHhc-----CCeEEEecCCcchHHHHHhCCee
Confidence 022222235688888877653 34667899999999999998773
No 176
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=57.85 E-value=5.4 Score=39.96 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc--hHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKIac 959 (1061)
.+|+.++.+.++++ |++.-+|+............+. + ..+.+ -++.+. ++...+| +.|..++
T Consensus 99 ~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~-l----~~~fd-~i~~~~---------~~~~~KP~~~~~~~~~ 162 (224)
T TIGR02254 99 LPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSG-L----FPFFD-DIFVSE---------DAGIQKPDKEIFNYAL 162 (224)
T ss_pred CccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCC-c----HhhcC-EEEEcC---------ccCCCCCCHHHHHHHH
Confidence 56677777778888 8888888865444433322220 0 01111 122221 1222244 4555333
Q ss_pred HHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCCC
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIPR 995 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP~ 995 (1061)
+.+..+-|. .-+| +|++. +|+.+-+++||+.
T Consensus 163 -~~~~~~~~~--~~v~--igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 163 -ERMPKFSKE--EVLM--IGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred -HHhcCCCch--heEE--ECCCcHHHHHHHHHCCCcE
Confidence 222122122 2344 78887 7999999999986
No 177
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=57.64 E-value=16 Score=36.86 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCc--hHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAP--HEFKIA 958 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrP--eeFKIa 958 (1061)
..||+.++.+.++++||++.-+|+.+........ .+... +-..+-+ .++.+- ++..+|| +.|+..
T Consensus 95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~-~~~~~--~l~~~fd-~v~~s~---------~~~~~KP~p~~~~~~ 161 (211)
T TIGR02247 95 LRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEE-ALLPG--DIMALFD-AVVESC---------LEGLRKPDPRIYQLM 161 (211)
T ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCCccchhhh-Hhhhh--hhHhhCC-EEEEee---------ecCCCCCCHHHHHHH
Confidence 3689999999999999999999986433211111 11100 0000111 122211 1222344 456544
Q ss_pred HHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 959 CLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 959 cL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
+ +.+ .+-|. .-+| +|++..|+.+=+++|+..
T Consensus 162 ~-~~~-g~~~~--~~l~--i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 162 L-ERL-GVAPE--ECVF--LDDLGSNLKPAAALGITT 192 (211)
T ss_pred H-HHc-CCCHH--HeEE--EcCCHHHHHHHHHcCCEE
Confidence 3 222 12121 2344 699999999999999954
No 178
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=56.69 E-value=42 Score=35.65 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCcEEEEecCCccccccc----ccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcC
Q 001520 851 NTRIVISDVDGTITKSDV----LGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKA 926 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDv----lGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~ 926 (1061)
.-|.+|+|||||+|.--. -|+.+...-. ..|.. ...|.+.|-++--+|+|.-.....--.=| +
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv---~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~L--------G 73 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNV---RDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKDL--------G 73 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeec---cCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHHc--------C
Confidence 457899999999997322 1333332211 12221 24667899999999999655443322222 2
Q ss_pred CCCCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 927 LPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 927 LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
++ .++ .- -.=|.+++.+|+.-..-.. -=.|-.|+-..|.-+.++||++.
T Consensus 74 I~---------~~~----qG------~~dK~~a~~~L~~~~~l~~-e~~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 74 IK---------HLY----QG------ISDKLAAFEELLKKLNLDP-EEVAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred Cc---------eee----ec------hHhHHHHHHHHHHHhCCCH-HHhhhhcCccccHHHHHHcCCcc
Confidence 33 111 11 1127888777775543221 11234788999999999999985
No 179
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=56.49 E-value=47 Score=41.36 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
+|-.++|+.+.++.+++.|++++-+|+....-+.....-| ++.. .+ .| -.| +-|.
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l--------GI~~---------v~---a~----~~P-edK~ 498 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA--------GVDD---------FI---AE----ATP-EDKI 498 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc--------CCCE---------EE---cC----CCH-HHHH
Confidence 4778999999999999999999999998776666665555 2321 11 11 134 4499
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
++++.++.. . -.++..|+..||+-|-++++|.
T Consensus 499 ~~v~~lq~~----g-~~VamvGDG~NDapAL~~AdvG 530 (675)
T TIGR01497 499 ALIRQEQAE----G-KLVAMTGDGTNDAPALAQADVG 530 (675)
T ss_pred HHHHHHHHc----C-CeEEEECCCcchHHHHHhCCEe
Confidence 999998875 2 3577899999999999988655
No 180
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=55.02 E-value=78 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
-+..+++|.++.+.|.+|+-+|.-+- ...+.|..
T Consensus 51 l~~l~~~~~~~~~~gv~vi~VS~D~~---~~~~~~~~ 84 (187)
T TIGR03137 51 LEDLADKYAELKKLGVEVYSVSTDTH---FVHKAWHD 84 (187)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCH---HHHHHHHh
Confidence 35667788899989999999997653 23444543
No 181
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=54.92 E-value=62 Score=32.10 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEccchh-----hHHHHHHHHHHhcccCCcCCCCCceecCC
Q 001520 883 TGVAHLFSAIKENGYQLLFLSARAI-----VQAYHTRRFLFTLKQDGKALPDGPVVISP 936 (1061)
Q Consensus 883 ~GVAkLYskI~~NGYkILYLSARpI-----gqA~~TR~yL~~i~Q~g~~LP~GPVLLSP 936 (1061)
+.+.+|+.++.+.+.+|+-+|.-+. .-....+.|++ .+++| .|++..+
T Consensus 45 ~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~-----~~~~~-~~~l~D~ 97 (171)
T cd02969 45 DRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAK-----EHGYP-FPYLLDE 97 (171)
T ss_pred HHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHH-----HCCCC-ceEEECC
Confidence 6788899999888999998886543 22456666664 34555 5666544
No 182
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=54.39 E-value=7.5 Score=38.28 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEE
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFI 1000 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFi 1000 (1061)
.++|+.++.. +......-.+|+.+-....+.+||+...+|-
T Consensus 133 ~~~l~~L~~~---Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a 173 (215)
T PF00702_consen 133 KEALQELKEA---GIKVAILTGDNESTASAIAKQLGIFDSIVFA 173 (215)
T ss_dssp HHHHHHHHHT---TEEEEEEESSEHHHHHHHHHHTTSCSEEEEE
T ss_pred hhhhhhhhcc---Ccceeeeeccccccccccccccccccccccc
Confidence 3456666665 1123444556666667777789997766665
No 183
>PRK13189 peroxiredoxin; Provisional
Probab=53.49 E-value=91 Score=33.32 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccC-CcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQD-GKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~-g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
.+..+++|..+++.|.+|+-+|.-+ ....+.|++.+.+. +..+| -|++.-+++
T Consensus 55 l~~l~~~~~ef~~~~v~VigvS~D~---~~~h~aw~~~~~~~~g~~i~-fPllsD~~~---------------------- 108 (222)
T PRK13189 55 FVAFQKRYDEFRELNTELIGLSIDQ---VFSHIKWVEWIKEKLGVEIE-FPIIADDRG---------------------- 108 (222)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCC---HHHHHHHHHhHHHhcCcCcc-eeEEEcCcc----------------------
Confidence 4567788899999999999998643 22355677655432 33343 455554432
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeeccc---CCcchhhhhhhcccc
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRV---DSKTYSSIHALVHGM 1028 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~---~~sSY~sL~elVD~~ 1028 (1061)
.|...|.- ..... -|...--+|+|||+|.|+..... .-.++..+-.+++.+
T Consensus 109 -~ia~~ygv----~~~~~------------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 109 -EIAKKLGM----ISPGK------------GTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred -HHHHHhCC----Ccccc------------CCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 22223211 00001 12245569999999999754321 124677777777654
No 184
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=53.45 E-value=61 Score=32.58 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.8
Q ss_pred cEEEEecCCccccccc
Q 001520 853 RIVISDVDGTITKSDV 868 (1061)
Q Consensus 853 KIVISDIDGTITKSDv 868 (1061)
|+||||+||||..+..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 6899999999998663
No 185
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=53.18 E-value=55 Score=38.00 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 961 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~ 961 (1061)
.||+.++...++++||++.-+|+.+-..+...-+.+. +. .-|. .++...+ . . ..++|+.|..++ +
T Consensus 332 ~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~-l~---~~f~--~i~~~d~-v----~---~~~kP~~~~~al-~ 396 (459)
T PRK06698 332 YPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYD-LD---QWVT--ETFSIEQ-I----N---SLNKSDLVKSIL-N 396 (459)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCC-cH---hhcc--eeEecCC-C----C---CCCCcHHHHHHH-H
Confidence 5899999999999999999999987665555444431 10 0111 1333221 1 0 135677665443 2
Q ss_pred HHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 962 DIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 962 dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
. +.+. .. ..+|++.+|+.+=+++|+.
T Consensus 397 ~----l~~~--~~-v~VGDs~~Di~aAk~AG~~ 422 (459)
T PRK06698 397 K----YDIK--EA-AVVGDRLSDINAAKDNGLI 422 (459)
T ss_pred h----cCcc--eE-EEEeCCHHHHHHHHHCCCe
Confidence 2 2322 23 3699999999999999995
No 186
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=52.68 E-value=7.9 Score=38.33 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=12.5
Q ss_pred EEEEecCCcccccc
Q 001520 854 IVISDVDGTITKSD 867 (1061)
Q Consensus 854 IVISDIDGTITKSD 867 (1061)
+||||.||||..|.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 69999999999874
No 187
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=51.54 E-value=8.2 Score=39.24 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=16.3
Q ss_pred ecCCCchhHHhHhhcCCCC
Q 001520 977 GFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 977 GFGNR~TDv~AYraVGIP~ 995 (1061)
-+|++..|+.+=+++|++.
T Consensus 164 ~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred EEeCcHhhHHHHHHCCCEE
Confidence 3788999999999999973
No 188
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=51.43 E-value=7.9 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.4
Q ss_pred CCcEEEEecCCcccccc
Q 001520 851 NTRIVISDVDGTITKSD 867 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSD 867 (1061)
.-|.||||+||||+.+.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35789999999999774
No 189
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=51.01 E-value=8.3 Score=40.44 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhh--ccCchHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVI--RRAPHEFKIA 958 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI--~KrPeeFKIa 958 (1061)
+-+||.++...++.+|.++--.|+++-.....+..=+ + -++.-+.+...+ ++. .+.|+.|=.+
T Consensus 87 ~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~------g-l~~~f~~~v~~~--------dv~~~KP~Pd~yL~A 151 (221)
T COG0637 87 PIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL------G-LLDYFDVIVTAD--------DVARGKPAPDIYLLA 151 (221)
T ss_pred CCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc------c-ChhhcchhccHH--------HHhcCCCCCHHHHHH
Confidence 4678888888888888777777776543333322211 1 111111122111 222 3344555333
Q ss_pred HHHHHHhh-CCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECC
Q 001520 959 CLEDIKAL-FPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINP 1003 (1061)
Q Consensus 959 cL~dI~~L-FP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINp 1003 (1061)
+ +.| +.+. -. .+|.+..+.+.|-+++|+- ++.|..
T Consensus 152 a----~~Lgv~P~--~C-vviEDs~~Gi~Aa~aAGm~---vv~v~~ 187 (221)
T COG0637 152 A----ERLGVDPE--EC-VVVEDSPAGIQAAKAAGMR---VVGVPA 187 (221)
T ss_pred H----HHcCCChH--He-EEEecchhHHHHHHHCCCE---EEEecC
Confidence 2 222 2221 23 4799999999999999974 445443
No 190
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=50.36 E-value=30 Score=37.79 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHH--HCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCC--ceecCCC
Q 001520 882 QTGVAHLFSAIK--ENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDG--PVVISPD 937 (1061)
Q Consensus 882 H~GVAkLYskI~--~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~G--PVLLSPd 937 (1061)
+||+.++++.++ .+|+.++-||- +..-.+..||+ .++|-.- .|+++|-
T Consensus 73 ~pgm~~~l~~l~~~~~~~~~~IiSD---aNs~fI~~iL~-----~~gl~~~f~~I~TNpa 124 (234)
T PF06888_consen 73 DPGMKELLRFLAKNQRGFDLIIISD---ANSFFIETILE-----HHGLRDCFSEIFTNPA 124 (234)
T ss_pred CccHHHHHHHHHhcCCCceEEEEeC---CcHhHHHHHHH-----hCCCccccceEEeCCc
Confidence 567777777783 46888888864 44556667774 5555432 5677763
No 191
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=50.31 E-value=6.9 Score=38.13 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.5
Q ss_pred EEEEecCCcccccc
Q 001520 854 IVISDVDGTITKSD 867 (1061)
Q Consensus 854 IVISDIDGTITKSD 867 (1061)
+||||+||||..+.
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 48999999999876
No 192
>COG4996 Predicted phosphatase [General function prediction only]
Probab=49.92 E-value=14 Score=38.29 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.4
Q ss_pred cEEEEecCCccccccccc
Q 001520 853 RIVISDVDGTITKSDVLG 870 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlG 870 (1061)
+++++|.|||+...+-..
T Consensus 1 ~~i~~d~d~t~wdhh~iS 18 (164)
T COG4996 1 RAIVFDADKTLWDHHNIS 18 (164)
T ss_pred CcEEEeCCCcccccccch
Confidence 468999999997654433
No 193
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=48.51 E-value=65 Score=38.40 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCChhhHHHHHHHHHHCCC-eEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGY-QLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFK 956 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGY-kILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFK 956 (1061)
.|-..+|+.++.+.+++.|+ ++.-+|+.+...+...-+-+ +++ ..|... .| .-|
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l--------gi~---------~~f~~~-------~p-~~K 414 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL--------GID---------EVHAEL-------LP-EDK 414 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc--------CCh---------hhhhcc-------Cc-HHH
Confidence 35667999999999999999 99999998765444433332 332 112111 12 236
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
.+.++.++... --.+.+|+..+|+.|-+++|+
T Consensus 415 ~~~i~~l~~~~-----~~v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 415 LEIVKELREKY-----GPVAMVGDGINDAPALAAADV 446 (536)
T ss_pred HHHHHHHHhcC-----CEEEEEeCCHHHHHHHHhCCE
Confidence 77777777541 234579999999999999996
No 194
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=47.94 E-value=7.5 Score=38.88 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=11.7
Q ss_pred EEEecCCcccccc
Q 001520 855 VISDVDGTITKSD 867 (1061)
Q Consensus 855 VISDIDGTITKSD 867 (1061)
||||+||||..|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 6999999999875
No 195
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=47.22 E-value=10 Score=38.26 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.7
Q ss_pred cEEEEecCCcccccc
Q 001520 853 RIVISDVDGTITKSD 867 (1061)
Q Consensus 853 KIVISDIDGTITKSD 867 (1061)
|+||||.||||..++
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 689999999999886
No 196
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=46.90 E-value=47 Score=35.01 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=52.1
Q ss_pred CChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccc---hhhh-hccCch--
Q 001520 880 WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSL---FREV-IRRAPH-- 953 (1061)
Q Consensus 880 WTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL---~REV-I~KrPe-- 953 (1061)
++.+|+..+++.+.++|+++ ++|..+..++... + ..+..|+ ++.++ .++. ...||+
T Consensus 138 ~~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~---~-------~~~~~g~-------~~~~i~~~g~~~~~~gKP~~~ 199 (242)
T TIGR01459 138 LDLDEFDELFAPIVARKIPN-ICANPDRGINQHG---I-------YRYGAGY-------YAELIKQLGGKVIYSGKPYPA 199 (242)
T ss_pred CCHHHHHHHHHHHHhCCCcE-EEECCCEeccCCC---c-------eEecccH-------HHHHHHHhCCcEecCCCCCHH
Confidence 88999999999999999997 7787655433211 1 1111222 12211 1111 234555
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEecCCC-chhHHhHhhcCCC
Q 001520 954 EFKIACLEDIKALFPSDCNPFYAGFGNR-DTDEISYLKVGIP 994 (1061)
Q Consensus 954 eFKIacL~dI~~LFP~~~nPFyAGFGNR-~TDv~AYraVGIP 994 (1061)
.|+.. ++.+. .-+. .. ...+|++ .+|+.+-+++|+.
T Consensus 200 ~~~~~-~~~~~-~~~~-~~--~~~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 200 IFHKA-LKECS-NIPK-NR--MLMVGDSFYTDILGANRLGID 236 (242)
T ss_pred HHHHH-HHHcC-CCCc-cc--EEEECCCcHHHHHHHHHCCCe
Confidence 44432 33221 1111 12 2358899 6999999999985
No 197
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=46.30 E-value=80 Score=40.06 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchh----------hh
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFR----------EV 947 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~R----------EV 947 (1061)
.|..++|+.+....+++.|+++.-+|+-...-|.....-+ ++.. +.+.++.-. -+..+.. .|
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~-----~~~~~v~g~--~l~~~~~~~l~~~~~~~~V 597 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPS-----KTSQSVSGE--KLDAMDDQQLSQIVPKVAV 597 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC-----CCCceeEhH--HhHhCCHHHHHHHhhcCeE
Confidence 5888999999999999999999999999887777766555 1211 111111100 0001110 12
Q ss_pred hccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 948 IRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 948 I~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
..+-..+-|..+++.++.. .-.++..|+..+|+-|-++++|
T Consensus 598 far~~P~~K~~iv~~lq~~-----g~~v~mvGDGvND~pAl~~AdV 638 (884)
T TIGR01522 598 FARASPEHKMKIVKALQKR-----GDVVAMTGDGVNDAPALKLADI 638 (884)
T ss_pred EEECCHHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHHhCCe
Confidence 2333346688888888865 2467789999999999999865
No 198
>PTZ00445 p36-lilke protein; Provisional
Probab=45.47 E-value=1.1e+02 Score=33.85 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=78.2
Q ss_pred EecCCCcEEEEecCCcccccccccccccc-----cCCCCChhhHHHHHHHHHHCCCeEEEEccchh------------hH
Q 001520 847 LWKWNTRIVISDVDGTITKSDVLGQFMPL-----VGVDWSQTGVAHLFSAIKENGYQLLFLSARAI------------VQ 909 (1061)
Q Consensus 847 LW~~~dKIVISDIDGTITKSDvlGhIlP~-----LGKDWTH~GVAkLYskI~~NGYkILYLSARpI------------gq 909 (1061)
|...+=|+|++|.|-||..-+.-|-.-|. ++.- .-|..-.+..++++.|.+|+-+|=.+- .=
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~-~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg 116 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTS-VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISG 116 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhcc-CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceech
Confidence 35667799999999998875655655443 1111 135577788999999999999886543 22
Q ss_pred HHHHHHHHHhc------ccCCcCCCCCceecCCCCCCccchhhhhccCch-HHHHHHHHHHHhhCCCCCC-CEEEecCCC
Q 001520 910 AYHTRRFLFTL------KQDGKALPDGPVVISPDGLFPSLFREVIRRAPH-EFKIACLEDIKALFPSDCN-PFYAGFGNR 981 (1061)
Q Consensus 910 A~~TR~yL~~i------~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPe-eFKIacL~dI~~LFP~~~n-PFyAGFGNR 981 (1061)
.++.+.-|+.- ++-..--|+ .- -.+..++-+-..+|+ ..|.--|+.+...+.-... -+| |+++
T Consensus 117 ~~li~~~lk~s~~~~~i~~~~~yyp~--~w-----~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LF--IDD~ 187 (219)
T PTZ00445 117 DRMVEAALKKSKCDFKIKKVYAYYPK--FW-----QEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILF--IDDD 187 (219)
T ss_pred HHHHHHHHHhcCccceeeeeeeeCCc--cc-----CChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEe--ecCC
Confidence 34555555411 111111221 00 001112222334565 4555555555555432211 233 7888
Q ss_pred chhHHhHhhcCCCC
Q 001520 982 DTDEISYLKVGIPR 995 (1061)
Q Consensus 982 ~TDv~AYraVGIP~ 995 (1061)
...+.+=+++|+..
T Consensus 188 ~~NVeaA~~lGi~a 201 (219)
T PTZ00445 188 MNNCKNALKEGYIA 201 (219)
T ss_pred HHHHHHHHHCCCEE
Confidence 88888888888754
No 199
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=45.29 E-value=25 Score=31.44 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.1
Q ss_pred cCCceEeccccccccccCCcEEEEEECCeecce
Q 001520 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANF 75 (1061)
Q Consensus 43 sSPFHVRFGK~qgvLr~~eK~V~i~VNG~~~~~ 75 (1061)
-.||.||+|+.. .|+|.+||+++++
T Consensus 37 ~~~~~i~iGna~--------~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 37 KEPFRIRIGNAG--------AVEVTVNGKPVDL 61 (77)
T ss_pred CCCEEEEEeCCC--------cEEEEECCEECCC
Confidence 579999999985 3899999999987
No 200
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=44.79 E-value=1.1e+02 Score=31.69 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEccchh
Q 001520 883 TGVAHLFSAIKENGYQLLFLSARAI 907 (1061)
Q Consensus 883 ~GVAkLYskI~~NGYkILYLSARpI 907 (1061)
...++++..+++.|.+|+-+|..+.
T Consensus 57 ~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 57 IQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 5678899999999999999998654
No 201
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.96 E-value=1.2e+02 Score=28.42 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCC
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGL 939 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsL 939 (1061)
.+.+.+++..+.+.|..|+-++.-... ..+.|.+ .+.+| .|++.-|++.
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~-----~~~~~-~p~~~D~~~~ 91 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPESPE---KLEAFDK-----GKFLP-FPVYADPDRK 91 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHH-----hcCCC-CeEEECCchh
Confidence 456677888898999999999875442 2346664 34554 6888888753
No 202
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=42.85 E-value=10 Score=38.28 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=18.1
Q ss_pred CCchhHHhHhh----cCCCCCcEEEECCC
Q 001520 980 NRDTDEISYLK----VGIPRGKIFIINPK 1004 (1061)
Q Consensus 980 NR~TDv~AYra----VGIP~sRIFiINpk 1004 (1061)
.+.-+...|.. .|+++++++.|+-.
T Consensus 129 ~~KP~~~~~~~~~~~~~~~~~~~l~igD~ 157 (205)
T TIGR01454 129 RPKPAPDIVREALRLLDVPPEDAVMVGDA 157 (205)
T ss_pred CCCCChHHHHHHHHHcCCChhheEEEcCC
Confidence 34446777776 69999998888764
No 203
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=42.65 E-value=66 Score=40.80 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=69.1
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchh----------hh
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFR----------EV 947 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~R----------EV 947 (1061)
.|..++++.+..+.+++.|++++-+|+-...-|..+..-+ ++..+.++.-.+ +..+.. .|
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l--------GI~~~~v~~g~~--l~~~~~~el~~~~~~~~v 582 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV--------GIDANDFLLGAD--IEELSDEELARELRKYHI 582 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc--------CCCCCCeeecHh--hhhCCHHHHHHHhhhCeE
Confidence 5888999999999999999999999998776665555444 344444443321 111100 23
Q ss_pred hccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 948 IRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 948 I~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
..+-.-+-|..+++.++.. .-.+|..|+..||+-|-+++.|
T Consensus 583 fAr~~Pe~K~~iV~~lq~~-----G~vVam~GDGvNDapALk~AdV 623 (867)
T TIGR01524 583 FARLTPMQKSRIIGLLKKA-----GHTVGFLGDGINDAPALRKADV 623 (867)
T ss_pred EEECCHHHHHHHHHHHHhC-----CCEEEEECCCcccHHHHHhCCE
Confidence 3333446688888888864 3467889999999988887533
No 204
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=42.65 E-value=14 Score=44.21 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcC
Q 001520 954 EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVG 992 (1061)
Q Consensus 954 eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVG 992 (1061)
+-|...|+ ..+..+ .+-| |||++.+|..+-..++
T Consensus 175 e~Kv~rl~---~~~g~~-~~~~-aYgDS~sD~plL~~a~ 208 (497)
T PLN02177 175 DHKRDAVL---KEFGDA-LPDL-GLGDRETDHDFMSICK 208 (497)
T ss_pred HHHHHHHH---HHhCCC-CceE-EEECCccHHHHHHhCC
Confidence 34666665 444332 2334 9999999999988877
No 205
>PLN02811 hydrolase
Probab=41.66 E-value=70 Score=33.03 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHH-HHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhh--ccCchHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAY-HTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVI--RRAPHEFKI 957 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~-~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI--~KrPeeFKI 957 (1061)
..+||.++.+.++++||++.-+|+....... .+..++. + ..+.+ .++. .+ -.++- .+.|+.|..
T Consensus 79 l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~-l----~~~f~-~i~~-~~------~~~~~~~KP~p~~~~~ 145 (220)
T PLN02811 79 LMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGE-L----FSLMH-HVVT-GD------DPEVKQGKPAPDIFLA 145 (220)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHH-H----HhhCC-EEEE-CC------hhhccCCCCCcHHHHH
Confidence 3699999999999999999999986543221 1111110 0 01111 1222 22 01222 334455554
Q ss_pred HHHHHHHh-hCCCCCCCEEEecCCCchhHHhHhhcCCCC
Q 001520 958 ACLEDIKA-LFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 958 acL~dI~~-LFP~~~nPFyAGFGNR~TDv~AYraVGIP~ 995 (1061)
++ +++.. -+.+ ..-+ .+|++..|+.|=+++|++.
T Consensus 146 a~-~~~~~~~~~~-~~~v--~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 146 AA-RRFEDGPVDP-GKVL--VFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred HH-HHhCCCCCCc-cceE--EEeccHhhHHHHHHCCCeE
Confidence 43 22210 0222 1233 5999999999999999964
No 206
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=41.57 E-value=99 Score=38.68 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC----CceecCCCCCCccc----hhh---
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD----GPVVISPDGLFPSL----FRE--- 946 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~----GPVLLSPdsLf~AL----~RE--- 946 (1061)
.|.+++++.+..+.+++.|.+++-||+....-|..+-.-+ +++. |.-+...+.+ ..+ ..+
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l--------GI~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 510 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL--------GLGTNIYTADVLLKGDNR-DDLPSGELGEMVE 510 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------CCCCCCcCHHHhcCCcch-hhCCHHHHHHHHH
Confidence 5888999999999999999999999999877776666544 3332 1111110000 000 001
Q ss_pred ---hhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 947 ---VIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 947 ---VI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
+..+-.-+-|..+++.++.. .-.+|--|+..||+-|-+++ ||..
T Consensus 511 ~~~vfAr~~Pe~K~~iV~~lq~~-----G~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 511 DADGFAEVFPEHKYEIVEILQKR-----GHLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred hCCEEEecCHHHHHHHHHHHHhc-----CCEEEEEcCCcccHHHHHhCCeeEEe
Confidence 22222224588888888864 35678899999998888765 6554
No 207
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.08 E-value=51 Score=42.51 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCcEEEEecCCcccccccc-----cccccccCCCCChhhHHHHHHHHHHC-CCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVL-----GQFMPLVGVDWSQTGVAHLFSAIKEN-GYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvl-----GhIlP~LGKDWTH~GVAkLYskI~~N-GYkILYLSARpIgqA~~TR~yL 917 (1061)
..+++++|.||||+--.-. .++.++ .-.+++++..+.+.|.+. +..+.-+|+|+... ...||
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~--~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~---Le~~f 657 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEM--ELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV---LDENF 657 (934)
T ss_pred cceEEEEecCceeccCCCCccccccccccc--ccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH---HHHHh
Confidence 4578999999999852100 011111 234679999999988875 78899999998653 34455
No 208
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=40.67 E-value=1.2e+02 Score=38.04 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
+|..++++.+.++.+++.|.+++-+|+-...-|.....-+ ++.+ ++.+-.-+-|.
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el--------GI~~-----------------v~A~~~PedK~ 493 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA--------GVDR-----------------FVAECKPEDKI 493 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------CCce-----------------EEcCCCHHHHH
Confidence 5888999999999999999999999998777666666544 3431 12223345699
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
+.++.++.. .-.+|--|+..||+-|-+++ ||..
T Consensus 494 ~iV~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAM 528 (673)
T PRK14010 494 NVIREEQAK-----GHIVAMTGDGTNDAPALAEANVGLAM 528 (673)
T ss_pred HHHHHHHhC-----CCEEEEECCChhhHHHHHhCCEEEEe
Confidence 999988864 35677889999999988875 5544
No 209
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.53 E-value=53 Score=41.39 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHC-CCeEEEEccchhhHHHHHHHHH
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKEN-GYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~N-GYkILYLSARpIgqA~~TR~yL 917 (1061)
..+++++|.||||+--. .....| ..-.+++++.++.+.|.+. +..+.-+|+|+.. ....||
T Consensus 506 ~~rll~LDyDGTL~~~~-~~~~~p--~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~---~L~~~~ 567 (797)
T PLN03063 506 NNRLLILGFYGTLTEPR-NSQIKE--MDLGLHPELKETLKALCSDPKTTVVVLSRSGKD---ILDKNF 567 (797)
T ss_pred cCeEEEEecCccccCCC-CCcccc--ccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHH---HHHHHh
Confidence 45789999999999310 000011 1124578999999988876 6888889999764 344566
No 210
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=40.12 E-value=26 Score=41.27 Aligned_cols=78 Identities=17% Similarity=0.411 Sum_probs=53.1
Q ss_pred cCCCcEEEEecCCcccccccccccccccCCCCC--hhhHHHHHHHHHHCCCeEEEEccc-----hhhHHHHHHHHHHhcc
Q 001520 849 KWNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSAR-----AIVQAYHTRRFLFTLK 921 (1061)
Q Consensus 849 ~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWT--H~GVAkLYskI~~NGYkILYLSAR-----pIgqA~~TR~yL~~i~ 921 (1061)
+.+.|++.||.||||.+.+. |.+.|.---||. ++-|..=+..+..+||+++.-|-. .-.-++.++.=.+.|.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~s-g~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~ 150 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKS-GKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV 150 (422)
T ss_pred CCCcceEEEecCCceeecCC-cceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH
Confidence 45789999999999998764 567776666775 777777777788999999988753 2223444444444444
Q ss_pred cCCcCCC
Q 001520 922 QDGKALP 928 (1061)
Q Consensus 922 Q~g~~LP 928 (1061)
.+ .++|
T Consensus 151 an-l~vP 156 (422)
T KOG2134|consen 151 AN-LGVP 156 (422)
T ss_pred Hh-cCCc
Confidence 43 4555
No 211
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=39.35 E-value=1.8e+02 Score=31.62 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCChhhHHHHHH-HHHHCCCeEEEEccch-hhHHHHHHHHHHhcccCCcCCCCCceecCCC-CCCccchhhhhccCch
Q 001520 877 GVDWSQTGVAHLFS-AIKENGYQLLFLSARA-IVQAYHTRRFLFTLKQDGKALPDGPVVISPD-GLFPSLFREVIRRAPH 953 (1061)
Q Consensus 877 GKDWTH~GVAkLYs-kI~~NGYkILYLSARp-IgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPd-sLf~AL~REVI~KrPe 953 (1061)
-++|=...|++|.+ .+++..---+-||+|. ..++...+.-|. ..+|--=-|.|.|. ..+ ...=
T Consensus 51 w~gwWNe~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~-----s~~L~Fd~v~LKp~~~~~---------~sTm 116 (197)
T PF10307_consen 51 WEGWWNENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLA-----SKGLEFDAVCLKPENQRF---------SSTM 116 (197)
T ss_pred ccchhhHHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHh-----cCCCCccEEEeCcccccC---------cccc
Confidence 45677899999997 4777788889999999 488888888774 45555445556554 111 1234
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc
Q 001520 954 EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV 991 (1061)
Q Consensus 954 eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV 991 (1061)
.||..+|.++...|+.- .-+ ..|.+|..=+..++..
T Consensus 117 ~fK~~~l~~ll~~Y~~~-~eI-~IYeDR~~hvk~Fr~F 152 (197)
T PF10307_consen 117 DFKQAFLEDLLHTYKNA-EEI-RIYEDRPKHVKGFRDF 152 (197)
T ss_pred HHHHHHHHHHHHhcCCC-CEE-EEEcCCHHHHHHHHHH
Confidence 79999999999998753 233 4799999999998864
No 212
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.27 E-value=93 Score=34.33 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCC-----CceecCCCCCCccchhhhhccCch-H
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD-----GPVVISPDGLFPSLFREVIRRAPH-E 954 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~-----GPVLLSPdsLf~AL~REVI~KrPe-e 954 (1061)
--|||-+|.+.|+++|-++.-+|+-=..++...++-| +||. --+++..++-|..| .+..+..+ .
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L--------gi~~~n~yAN~l~fd~~Gk~~gf--d~~~ptsdsg 158 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL--------GIPKSNIYANELLFDKDGKYLGF--DTNEPTSDSG 158 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh--------CCcHhhhhhheeeeccCCccccc--ccCCccccCC
Confidence 3699999999999999999999998888888888777 3553 33445555544332 12222223 3
Q ss_pred HHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeecccC-Ccchhh
Q 001520 955 FKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRVD-SKTYSS 1020 (1061)
Q Consensus 955 FKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~~-~sSY~s 1020 (1061)
-|-+.|..|+.-++- .-....|+..||..|- |+..- .|..-|.++.+..+. .++|..
T Consensus 159 gKa~~i~~lrk~~~~---~~~~mvGDGatDlea~-----~pa~a-fi~~~g~~~r~~vk~nak~~~~ 216 (227)
T KOG1615|consen 159 GKAEVIALLRKNYNY---KTIVMVGDGATDLEAM-----PPADA-FIGFGGNVIREGVKANAKWYVT 216 (227)
T ss_pred ccHHHHHHHHhCCCh---heeEEecCCccccccC-----Cchhh-hhccCCceEcHhhHhccHHHHH
Confidence 588888899886543 2345789999999875 44444 446666666543332 355653
No 213
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=1.7e+02 Score=30.70 Aligned_cols=111 Identities=21% Similarity=0.306 Sum_probs=63.7
Q ss_pred ecCC-cccccccccc-c-ccccCCCCCh------hhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCC
Q 001520 858 DVDG-TITKSDVLGQ-F-MPLVGVDWSQ------TGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALP 928 (1061)
Q Consensus 858 DIDG-TITKSDvlGh-I-lP~LGKDWTH------~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP 928 (1061)
|.|| ||+.||..|+ + +-.-=+|||- -+--++|..+.+.|+.++=+|.-+.. ..+.|.. .++||
T Consensus 17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~---~~~~F~~-----k~~L~ 88 (157)
T COG1225 17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPK---SHKKFAE-----KHGLT 88 (157)
T ss_pred cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHH---HHHHHHH-----HhCCC
Confidence 4566 7889999997 1 1111245541 12335667888999999999886654 4455553 56676
Q ss_pred CCceecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCcee
Q 001520 929 DGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 929 ~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~ 1008 (1061)
=|||-.+++ + +...|.-... -..|| +.......-.|+||+.|.|.
T Consensus 89 -f~LLSD~~~-------~----------------v~~~ygv~~~--k~~~g---------k~~~~~~R~TfvId~dG~I~ 133 (157)
T COG1225 89 -FPLLSDEDG-------E----------------VAEAYGVWGE--KKMYG---------KEYMGIERSTFVIDPDGKIR 133 (157)
T ss_pred -ceeeECCcH-------H----------------HHHHhCcccc--cccCc---------cccccccceEEEECCCCeEE
Confidence 444443322 1 3333321000 01222 22345667789999999998
Q ss_pred eec
Q 001520 1009 VNH 1011 (1061)
Q Consensus 1009 ~e~ 1011 (1061)
..-
T Consensus 134 ~~~ 136 (157)
T COG1225 134 YVW 136 (157)
T ss_pred EEe
Confidence 653
No 214
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=37.38 E-value=79 Score=33.77 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=44.9
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHH
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFL 917 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL 917 (1061)
.+-|++|-|+|+||..+-... .-+.-.-+||+-+|.+.+.+ .|.|+--||.....+...-.-|
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~----~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPA----ETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCcEEEEeCCCceEcccccC----CCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 456899999999999642211 12334557999999999988 6999999997665555544433
No 215
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=37.21 E-value=1.6e+02 Score=32.84 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHh-cccC-CcCCCCCceecCCCCCCccchhhhhccCchHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFT-LKQD-GKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~-i~Q~-g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
-+...++|.++++.|..|+-+|.-.. ...+.|... +++. ..+++ -|++.-+++
T Consensus 118 l~~l~~~~~ef~~~gv~VigIS~Ds~---~~h~aw~~~~~~~~g~~~l~-fPlLsD~~~--------------------- 172 (261)
T PTZ00137 118 LLGFSERLKEFEERGVKVLGVSVDSP---FSHKAWKELDVRQGGVSPLK-FPLFSDISR--------------------- 172 (261)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHhhhhhhccccCcc-eEEEEcCCh---------------------
Confidence 36677899999999999999987432 235566542 2221 12343 355554421
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeecccC---Ccchhhhhhhcccc
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRVD---SKTYSSIHALVHGM 1028 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~~---~sSY~sL~elVD~~ 1028 (1061)
.+...| |-.. ..|++.--+|+||++|.|+...... ..+...+-+.+|.+
T Consensus 173 --~iakay-----------Gv~~-------~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 173 --EVSKSF-----------GLLR-------DEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred --HHHHHc-----------CCCC-------cCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 233332 2110 1266778899999999998643221 23555555555543
No 216
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=37.13 E-value=1.4e+02 Score=37.53 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=63.9
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
+|-.++|+.+.++.+++.|.+++-||+=...-|.....= .++.+ +..+-.-+-|.
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~e--------lGId~-----------------v~A~~~PedK~ 497 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAE--------AGVDD-----------------FLAEATPEDKL 497 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH--------cCCcE-----------------EEccCCHHHHH
Confidence 477889999999999999999999999765544444433 33431 12222345699
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
++++.+++. .-.+|--|+..||+-|-+++ ||..
T Consensus 498 ~iV~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAM 532 (679)
T PRK01122 498 ALIRQEQAE-----GRLVAMTGDGTNDAPALAQADVGVAM 532 (679)
T ss_pred HHHHHHHHc-----CCeEEEECCCcchHHHHHhCCEeEEe
Confidence 999998875 34678899999999888875 6544
No 217
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=36.44 E-value=95 Score=39.75 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=69.4
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchh----------hh
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFR----------EV 947 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~R----------EV 947 (1061)
.|..++++.+..+.+++.|.+++-+|+=...-|...-.-+ ++..+.++.-.+ +..+.. .|
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l--------GI~~~~vi~G~e--l~~~~~~el~~~v~~~~V 617 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV--------GLEPGEPLLGTE--IEAMDDAALAREVEERTV 617 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------CCCCCCccchHh--hhhCCHHHHHHHhhhCCE
Confidence 5888999999999999999999999997665555554444 344344332211 111111 23
Q ss_pred hccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhh--cCCCC
Q 001520 948 IRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLK--VGIPR 995 (1061)
Q Consensus 948 I~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYra--VGIP~ 995 (1061)
..+-.-+-|..+++.++.. .-.+|--|+..||+-|-++ |||..
T Consensus 618 fAr~sPe~K~~iV~~Lq~~-----G~vVamtGDGvNDaPALk~ADVGIAm 662 (903)
T PRK15122 618 FAKLTPLQKSRVLKALQAN-----GHTVGFLGDGINDAPALRDADVGISV 662 (903)
T ss_pred EEEeCHHHHHHHHHHHHhC-----CCEEEEECCCchhHHHHHhCCEEEEe
Confidence 3333445699988888864 3567889999999888776 46654
No 218
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=35.93 E-value=1.6e+02 Score=37.86 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=69.7
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCC-C-CceecCCCCCCccch----h------
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALP-D-GPVVISPDGLFPSLF----R------ 945 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP-~-GPVLLSPdsLf~AL~----R------ 945 (1061)
.|..++++.+..+.+++.|.+++-+|+-...-|..+..-+ ++. + +-++.-+ . +..+. +
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~--------GI~~~~~~vi~G~-~-~~~l~~~el~~~i~~~ 646 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC--------GILTFGGLAMEGK-E-FRRLVYEEMDPILPKL 646 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc--------CCCCCCceEeeHH-H-hhhCCHHHHHHHhccC
Confidence 5888999999999999999999999999777666665544 222 1 1122111 1 11111 1
Q ss_pred hhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 946 EVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 946 EVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
.|..+-.-+-|.++++.++.. ...+|.-|+..||+-|-+++ ||..
T Consensus 647 ~Vfar~sPe~K~~iV~~lq~~-----g~vVam~GDGvNDapALk~AdVGIAm 693 (941)
T TIGR01517 647 RVLARSSPLDKQLLVLMLKDM-----GEVVAVTGDGTNDAPALKLADVGFSM 693 (941)
T ss_pred eEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCCchHHHHHhCCcceec
Confidence 133344446699998888874 34778999999999999875 6644
No 219
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=35.74 E-value=16 Score=42.30 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.0
Q ss_pred cEEEEecCCccccccc
Q 001520 853 RIVISDVDGTITKSDV 868 (1061)
Q Consensus 853 KIVISDIDGTITKSDv 868 (1061)
+.||||+||||..|.-
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 6799999999998763
No 220
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=35.68 E-value=2.8e+02 Score=26.99 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCC
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISP 936 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSP 936 (1061)
.+...++++.++++|..|+-+|... ....+.|++ .+++ ..|++.-+
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~---~~~~~~~~~-----~~~~-~~~~l~D~ 95 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDK---PEKLSRFAE-----KELL-NFTLLSDE 95 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHH-----HhCC-CCeEEECC
Confidence 3557789999999999999998753 366677875 2334 35565533
No 221
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=34.91 E-value=22 Score=35.92 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=19.6
Q ss_pred cCCCchhHHhHhh----cCCCCCcEEEECC
Q 001520 978 FGNRDTDEISYLK----VGIPRGKIFIINP 1003 (1061)
Q Consensus 978 FGNR~TDv~AYra----VGIP~sRIFiINp 1003 (1061)
+|.+--|+..|.. .|+++++++.|+-
T Consensus 137 ~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD 166 (199)
T PRK09456 137 LGMRKPEARIYQHVLQAEGFSAADAVFFDD 166 (199)
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHeEEeCC
Confidence 5666677877764 5999999888874
No 222
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=34.79 E-value=1e+02 Score=33.30 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=20.1
Q ss_pred CChhhHHHHHHHHHHCCCeEEEEccch
Q 001520 880 WSQTGVAHLFSAIKENGYQLLFLSARA 906 (1061)
Q Consensus 880 WTH~GVAkLYskI~~NGYkILYLSARp 906 (1061)
++.+|+.+++..++++|+ ++.+|..+
T Consensus 143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d 168 (279)
T TIGR01452 143 FSYAKLREACAHLREPGC-LFVATNRD 168 (279)
T ss_pred CCHHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 446999999999999998 44566654
No 223
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=33.82 E-value=19 Score=33.74 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.1
Q ss_pred EEEecCCccccccc
Q 001520 855 VISDVDGTITKSDV 868 (1061)
Q Consensus 855 VISDIDGTITKSDv 868 (1061)
||||+||||..++.
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 79999999997665
No 224
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=33.47 E-value=1.4e+02 Score=30.20 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHHHHH
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACL 960 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIacL 960 (1061)
+.+++.++.+.++++||++.-+|+++...+...-+.+. + ..+.+ .++..+... ..+.|+.|+..+
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~g-l----~~~f~--~~~~~~~~~-------~KP~p~~~~~~~- 171 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHG-L----EILFP--VQIWMEDCP-------PKPNPEPLILAA- 171 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcC-c----hhhCC--EEEeecCCC-------CCcCHHHHHHHH-
Confidence 34567899999999999999999997665554443331 1 12222 222221110 133455555543
Q ss_pred HHHHhhCCCCCCCEEEecCCCchhHHhHhh
Q 001520 961 EDIKALFPSDCNPFYAGFGNRDTDEISYLK 990 (1061)
Q Consensus 961 ~dI~~LFP~~~nPFyAGFGNR~TDv~AYra 990 (1061)
+.+ .+ .+ ...+| +|++.+|+.|=++
T Consensus 172 ~~~-~~-~~-~~~i~--vGD~~~Di~aA~~ 196 (197)
T TIGR01548 172 KAL-GV-EA-CHAAM--VGDTVDDIITGRK 196 (197)
T ss_pred HHh-Cc-Cc-ccEEE--EeCCHHHHHHHHh
Confidence 322 11 12 23444 8899999987543
No 225
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=33.45 E-value=2.3e+02 Score=27.02 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=38.8
Q ss_pred ecCC-cccccccccccc-cccCCC-CC------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 858 DVDG-TITKSDVLGQFM-PLVGVD-WS------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 858 DIDG-TITKSDvlGhIl-P~LGKD-WT------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
|.|| ++..+++.|+.. =.+-.. |. ++-+.+|+.+++++|..++.|++..-.. .++|+.
T Consensus 15 ~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~ 81 (146)
T PF08534_consen 15 DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLK 81 (146)
T ss_dssp ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHH
T ss_pred cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH---HHHHHH
Confidence 4777 455555555431 122223 64 5667888888999999999998876655 778885
No 226
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=33.36 E-value=1.4e+02 Score=37.51 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
.|-.++|+.+..+.+++.|+++..||+....-+......| | +. .. +. -.|+ -|.
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l------g--i~---~~------~~--------~~p~-~K~ 619 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL------G--ID---FR------AG--------LLPE-DKV 619 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc------C--CC---ee------cC--------CCHH-HHH
Confidence 3666899999999999999999999999877666666555 2 32 10 10 1233 488
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
+.++.++.- .. ++-.|+..+|+.|-++++|
T Consensus 620 ~~v~~l~~~----~~--v~mvGDgiNDapAl~~A~v 649 (741)
T PRK11033 620 KAVTELNQH----AP--LAMVGDGINDAPAMKAASI 649 (741)
T ss_pred HHHHHHhcC----CC--EEEEECCHHhHHHHHhCCe
Confidence 888887742 22 4568999999999887753
No 227
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=33.16 E-value=3e+02 Score=25.80 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
.+...++|.++.+.|..|+-+|.-. ....+.|+.
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~---~~~~~~~~~ 75 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS---PFSHKAWAE 75 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHh
Confidence 5778889999988999999998743 345677774
No 228
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=32.58 E-value=5e+02 Score=26.27 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=37.9
Q ss_pred EEEecCCc-cccccccccc-ccccCCCC-C------hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCc
Q 001520 855 VISDVDGT-ITKSDVLGQF-MPLVGVDW-S------QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGK 925 (1061)
Q Consensus 855 VISDIDGT-ITKSDvlGhI-lP~LGKDW-T------H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~ 925 (1061)
.+-|.||. ++.++..|+. +=.....| + .+...++|.++ .|.+|+-+|.-.. ...++|++ .+
T Consensus 28 ~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~---~~~~~f~~-----~~ 97 (167)
T PRK00522 28 TLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLP---FAQKRFCG-----AE 97 (167)
T ss_pred EEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCH---HHHHHHHH-----hC
Confidence 34456663 6677766641 11222333 2 34445555554 4899999986432 34588885 35
Q ss_pred CCCCCceec
Q 001520 926 ALPDGPVVI 934 (1061)
Q Consensus 926 ~LP~GPVLL 934 (1061)
+++.-|++.
T Consensus 98 ~~~~~~~ls 106 (167)
T PRK00522 98 GLENVITLS 106 (167)
T ss_pred CCCCceEee
Confidence 565434444
No 229
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=31.35 E-value=54 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=24.6
Q ss_pred CEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeee
Q 001520 973 PFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVN 1010 (1061)
Q Consensus 973 PFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e 1010 (1061)
+|...+++...-..+|.-.++| .+|+||++|+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P--~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLP--TTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccc--eEEEECCCCcEEEE
Confidence 3444466655556666666666 68999999998743
No 230
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.31 E-value=27 Score=35.21 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCcEEEEecCCccccccc
Q 001520 851 NTRIVISDVDGTITKSDV 868 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDv 868 (1061)
.-|+|+||+||||...+.
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 357899999999998654
No 231
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=31.03 E-value=46 Score=37.09 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=57.4
Q ss_pred ccCCCHHHHHhcCCCCCCceEEEEEEeecccceeeeEEEEEecC-CCcEEEEecCCcccccccccccccccCCCCChhhH
Q 001520 807 VLTPTSEQLASLNLKEGKNSVTFTFSTAMLGKQQVDARIYLWKW-NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGV 885 (1061)
Q Consensus 807 sLrpTSeQL~kLNLk~G~N~V~FsVtT~~qGt~~Vea~IYLW~~-~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GV 885 (1061)
.|.++.+.+++| |..|.|--+-. ..-...-|+|.. .+-+-|.|++=|+.+ + .-+
T Consensus 7 ~~~~~~~~i~~l-L~agvHlG~~~--------~np~M~~YIy~~r~dGi~IIdL~kT~~~---L-------------~~A 61 (249)
T PTZ00254 7 VLTPKEDDIKKM-LACKCHIGTKN--------LENAMKKYVYKRTKEGVHIINLAKTWEK---L-------------KLA 61 (249)
T ss_pred cCCCCHHHHHHH-HhcCceeccCc--------CCCcccccEecccCCCCEEEcHHHHHHH---H-------------HHH
Confidence 355666666655 55555533211 112356688875 577888898888877 2 446
Q ss_pred HHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhccc
Q 001520 886 AHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQ 922 (1061)
Q Consensus 886 AkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q 922 (1061)
+++...| .++-.|+++|+|+..+ ..++.|-..+.|
T Consensus 62 a~~i~~i-~~~~~Il~Vstr~~~~-~~V~k~A~~tg~ 96 (249)
T PTZ00254 62 ARVIAAI-ENPADVVVVSSRPYGQ-RAVLKFAQYTGA 96 (249)
T ss_pred HHHHHHH-hCCCcEEEEEcCHHHH-HHHHHHHHHhCC
Confidence 7777777 6788899999999765 455556654444
No 232
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=30.52 E-value=2.2e+02 Score=33.62 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=83.2
Q ss_pred EEEecCCcccccccccccccccCCCCChhhHHHHHHHHH-HCCCeEEEEccchhhHHHHHHHHHHhccc-CCcCCCCCce
Q 001520 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIK-ENGYQLLFLSARAIVQAYHTRRFLFTLKQ-DGKALPDGPV 932 (1061)
Q Consensus 855 VISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~-~NGYkILYLSARpIgqA~~TR~yL~~i~Q-~g~~LP~GPV 932 (1061)
-|.=+|=|+|-|+.-|+..|.= -.-.+..|+.+. ..|++=|.|-+-+-| .+..-.||.-+++ +...+|+.-+
T Consensus 156 SILvLDYsLt~~~~~~~~yPtQ-----L~qlv~~Y~~Lv~~~G~~nI~LmGDSAG-GnL~Ls~LqyL~~~~~~~~Pk~~i 229 (374)
T PF10340_consen 156 SILVLDYSLTSSDEHGHKYPTQ-----LRQLVATYDYLVESEGNKNIILMGDSAG-GNLALSFLQYLKKPNKLPYPKSAI 229 (374)
T ss_pred eEEEEeccccccccCCCcCchH-----HHHHHHHHHHHHhccCCCeEEEEecCcc-HHHHHHHHHHHhhcCCCCCCceeE
Confidence 4444667788777667777631 134678899888 889988888776433 2333334444444 4557999999
Q ss_pred ecCCCCCCccchhhhh-----ccCchHHHHHHHHHHHhhCCCC----CCCEEEecCCCch--hHHhHhhcCCCCCcEEEE
Q 001520 933 VISPDGLFPSLFREVI-----RRAPHEFKIACLEDIKALFPSD----CNPFYAGFGNRDT--DEISYLKVGIPRGKIFII 1001 (1061)
Q Consensus 933 LLSPdsLf~AL~REVI-----~KrPeeFKIacL~dI~~LFP~~----~nPFyAGFGNR~T--Dv~AYraVGIP~sRIFiI 1001 (1061)
|+||=--.......-. ..+-+..-...+....+.|-.. ....+.-|.|... |..-|+.+ ++...+|+|
T Consensus 230 LISPWv~l~~~~~~~~~~~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-~~~~~vfVi 308 (374)
T PF10340_consen 230 LISPWVNLVPQDSQEGSSYHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-LKKYSVFVI 308 (374)
T ss_pred EECCCcCCcCCCCCCCccccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHh-ccCCcEEEE
Confidence 9999432221110000 0001111122233344444332 1122345666666 88999999 888999998
Q ss_pred CCCCcee
Q 001520 1002 NPKGEVV 1008 (1061)
Q Consensus 1002 NpkGel~ 1008 (1061)
=-..|+.
T Consensus 309 ~Ge~Evf 315 (374)
T PF10340_consen 309 YGEDEVF 315 (374)
T ss_pred ECCcccc
Confidence 4444443
No 233
>PRK15000 peroxidase; Provisional
Probab=30.43 E-value=3.1e+02 Score=28.90 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhccc-CCc-CCCCCceecCCCCCCccchhhhhccCchHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQ-DGK-ALPDGPVVISPDGLFPSLFREVIRRAPHEFKIAC 959 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q-~g~-~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKIac 959 (1061)
.+..+++|.+++++|..|+-+|.-.. ..-+.|.+.+.+ .+. .+ .-|++.-+++
T Consensus 54 l~~l~~~~~~f~~~g~~vigvS~D~~---~~~~~w~~~~~~~~g~~~i-~fpllsD~~~--------------------- 108 (200)
T PRK15000 54 LIAFDKRYEEFQKRGVEVVGVSFDSE---FVHNAWRNTPVDKGGIGPV-KYAMVADVKR--------------------- 108 (200)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHhhHHHhCCcccc-CceEEECCCc---------------------
Confidence 36678899999999999999997643 223555543322 222 23 3455554432
Q ss_pred HHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCCCCcEEEECCCCceeeeccc---CCcchhhhhhhccc
Q 001520 960 LEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVVVNHRV---DSKTYSSIHALVHG 1027 (1061)
Q Consensus 960 L~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP~sRIFiINpkGel~~e~~~---~~sSY~sL~elVD~ 1027 (1061)
.+...| |-... ..|+..--.|+|||+|.|+..... ....+..+-++++.
T Consensus 109 --~ia~~y-----------gv~~~------~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 109 --EIQKAY-----------GIEHP------DEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred --HHHHHc-----------CCccC------CCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 222232 11110 126667889999999999864322 12456666666654
No 234
>PLN02412 probable glutathione peroxidase
Probab=30.26 E-value=2.5e+02 Score=28.41 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccch
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARA 906 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARp 906 (1061)
.+...+||++++++|..|+-+++-+
T Consensus 48 ~~~l~~l~~~~~~~g~~vvgv~~~~ 72 (167)
T PLN02412 48 YKELNVLYEKYKEQGFEILAFPCNQ 72 (167)
T ss_pred HHHHHHHHHHHhhCCcEEEEecccc
Confidence 3677889999999999999998753
No 235
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=29.42 E-value=88 Score=35.83 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=42.6
Q ss_pred EEecCCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhc
Q 001520 846 YLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTL 920 (1061)
Q Consensus 846 YLW~~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i 920 (1061)
++|.. +.+|++|+|.||..+.-.. +-+.+.|.+-.+.+++.|. ++||= +.|-++..+.-|..+
T Consensus 117 ~~~~~-phVIVfDlD~TLItd~~~v--------~Ir~~~v~~sL~~Lk~~g~-vLvLW--SyG~~eHV~~sl~~~ 179 (297)
T PF05152_consen 117 LVWEP-PHVIVFDLDSTLITDEGDV--------RIRDPAVYDSLRELKEQGC-VLVLW--SYGNREHVRHSLKEL 179 (297)
T ss_pred ccCCC-CcEEEEECCCcccccCCcc--------ccCChHHHHHHHHHHHcCC-EEEEe--cCCCHHHHHHHHHHh
Confidence 34433 4699999999998764322 2234889999999999986 44442 246677777777533
No 236
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=29.07 E-value=2.1e+02 Score=37.51 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc-----------eecCCCCCCccchh-
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP-----------VVISPDGLFPSLFR- 945 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP-----------VLLSPdsLf~AL~R- 945 (1061)
.|..++++.+..+.+++.|.+++-+|+....-|..+..=+ +|.... ..++-. -+..+..
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~--------Gi~~~~~~~~~~~~~~~~vitG~-~l~~l~~~ 714 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV--------GIIPPNFIHDRDEIMDSMVMTGS-QFDALSDE 714 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc--------CCCCccccccccccccceeeehH-HhhhcCHH
Confidence 5888999999999999999999999998777666655433 232110 111100 0111110
Q ss_pred ---------hhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCC
Q 001520 946 ---------EVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIP 994 (1061)
Q Consensus 946 ---------EVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP 994 (1061)
.|..+-..+-|..+++.++.. ...++..|+..||+-|-+++ ||.
T Consensus 715 ~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~-----g~~Vam~GDGvNDapaLk~AdVGIA 769 (1053)
T TIGR01523 715 EVDDLKALCLVIARCAPQTKVKMIEALHRR-----KAFCAMTGDGVNDSPSLKMANVGIA 769 (1053)
T ss_pred HHHHHhhcCeEEEecCHHHHHHHHHHHHhc-----CCeeEEeCCCcchHHHHHhCCccEe
Confidence 123333446688888888875 34678899999999999876 554
No 237
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=27.86 E-value=2.8e+02 Score=29.13 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 883 TGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 883 ~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
+...+++.++.+.|..++-+|.-+. ...+.|.+
T Consensus 52 ~~l~~~~~~f~~~g~~vigIS~D~~---~~~~a~~~ 84 (187)
T PRK10382 52 GDVADHYEELQKLGVDVYSVSTDTH---FTHKAWHS 84 (187)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCH---HHHHHHHH
Confidence 5677889999999999999996443 34566664
No 238
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=27.82 E-value=2.4e+02 Score=36.82 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=70.7
Q ss_pred cEEEEecCCcccccccccccccccC-CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCc
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVG-VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGP 931 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LG-KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GP 931 (1061)
-+|..-|||+++- +++ .|-..++++...+.|+.+|++++-||+-.+.-|..+..=+ | +-
T Consensus 704 tvv~v~vn~~l~g---------v~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V------G--i~--- 763 (951)
T KOG0207|consen 704 TVVYVAVNGQLVG---------VFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV------G--ID--- 763 (951)
T ss_pred eEEEEEECCEEEE---------EEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh------C--cc---
Confidence 3455556665553 222 3667899999999999999999999999888887776554 2 11
Q ss_pred eecCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhh--cCCC
Q 001520 932 VVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLK--VGIP 994 (1061)
Q Consensus 932 VLLSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYra--VGIP 994 (1061)
.. +-|+ .| +-|.+.+++|+.- . +-+|-.|+..||.-|-.+ |||.
T Consensus 764 ------~V----~aev---~P-~~K~~~Ik~lq~~----~-~~VaMVGDGINDaPALA~AdVGIa 809 (951)
T KOG0207|consen 764 ------NV----YAEV---LP-EQKAEKIKEIQKN----G-GPVAMVGDGINDAPALAQADVGIA 809 (951)
T ss_pred ------eE----Eecc---Cc-hhhHHHHHHHHhc----C-CcEEEEeCCCCccHHHHhhcccee
Confidence 00 1121 12 3488888888874 2 445789999999988876 4654
No 239
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=26.49 E-value=3.5e+02 Score=31.87 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=62.0
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHHH
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 957 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFKI 957 (1061)
.|-.++++......+++.|++++-+|+....-+..+...+ | + + .+-..+.|.
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l------g--i------------~--------~~~~p~~K~ 396 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL------G--I------------F--------ARVTPEEKA 396 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc------C--c------------e--------eccCHHHHH
Confidence 3666799999999999999999999999988888888777 2 1 1 112235588
Q ss_pred HHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCC
Q 001520 958 ACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 958 acL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGI 993 (1061)
++++.++.. + -..+.-|+..+|+.|-++++|
T Consensus 397 ~~v~~l~~~----g-~~v~~vGDg~nD~~al~~Adv 427 (499)
T TIGR01494 397 ALVEALQKK----G-RVVAMTGDGVNDAPALKKADV 427 (499)
T ss_pred HHHHHHHHC----C-CEEEEECCChhhHHHHHhCCC
Confidence 888877654 1 345678888999988887643
No 240
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=25.97 E-value=5.3e+02 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHH
Q 001520 882 QTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF 918 (1061)
Q Consensus 882 H~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~ 918 (1061)
.+.+.+++.++.+.+.+++.++.- ......+.|+.
T Consensus 80 ~~~l~~~~~~~~~~~~~vi~i~~d--~~~~~~~~~~~ 114 (173)
T PRK03147 80 MPYMNELYPKYKEKGVEIIAVNVD--ETELAVKNFVN 114 (173)
T ss_pred HHHHHHHHHHhhcCCeEEEEEEcC--CCHHHHHHHHH
Confidence 366677788888878888888653 22345555653
No 241
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.71 E-value=6.2e+02 Score=24.49 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchhhhhccCchHHH
Q 001520 877 GVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFK 956 (1061)
Q Consensus 877 GKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~REVI~KrPeeFK 956 (1061)
+-|+-.-|.--+-..++.+||+++||-.+ ....+..+...+ . ..--|.+|-. . ....+.=
T Consensus 8 ~gd~H~lG~~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~----~----~~d~V~iS~~--~---------~~~~~~~ 67 (122)
T cd02071 8 GLDGHDRGAKVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQ----E----DVDVIGLSSL--S---------GGHMTLF 67 (122)
T ss_pred CCChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHH----c----CCCEEEEccc--c---------hhhHHHH
Confidence 33444445544555788999999999886 444444444442 1 1222333321 0 0111111
Q ss_pred HHHHHHHHhhCCCCCCCEEEecCCCch-hHHhHhhcCCC
Q 001520 957 IACLEDIKALFPSDCNPFYAGFGNRDT-DEISYLKVGIP 994 (1061)
Q Consensus 957 IacL~dI~~LFP~~~nPFyAGFGNR~T-Dv~AYraVGIP 994 (1061)
.+.++.++..-++ .-++++|. +..+ +...|++.||.
T Consensus 68 ~~~~~~L~~~~~~-~i~i~~GG-~~~~~~~~~~~~~G~d 104 (122)
T cd02071 68 PEVIELLRELGAG-DILVVGGG-IIPPEDYELLKEMGVA 104 (122)
T ss_pred HHHHHHHHhcCCC-CCEEEEEC-CCCHHHHHHHHHCCCC
Confidence 3345556665232 33555444 4444 47889999964
No 242
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=25.67 E-value=1.1e+02 Score=33.10 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=52.8
Q ss_pred CCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccch----hhh---hccC
Q 001520 879 DWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLF----REV---IRRA 951 (1061)
Q Consensus 879 DWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~----REV---I~Kr 951 (1061)
.++.+++.+.++.+++.|++++..|+.+..+.. +.|.. +-...++.++. ++. -.+.
T Consensus 119 ~~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~----------------~~~~~-~g~g~~~~~i~~~~~~~~~~~gKP~ 181 (257)
T TIGR01458 119 HFSYQILNQAFRLLLDGAKPLLIAIGKGRYYKR----------------KDGLA-LDVGPFVTALEYATDTKATVVGKPS 181 (257)
T ss_pred ccCHHHHHHHHHHHHcCCCCEEEEeCCCCCCcC----------------CCCCC-CCchHHHHHHHHHhCCCceeecCCC
Confidence 356799999999999999999988876543221 11111 11222222221 121 1223
Q ss_pred chHHHHHHHHHHHhhCCCCCCCEEEecCCCc-hhHHhHhhcCCCC
Q 001520 952 PHEFKIACLEDIKALFPSDCNPFYAGFGNRD-TDEISYLKVGIPR 995 (1061)
Q Consensus 952 PeeFKIacL~dI~~LFP~~~nPFyAGFGNR~-TDv~AYraVGIP~ 995 (1061)
|+.|+.++ +.+ .+ ++ ..-+ .+|++. +|+.+-+++|+..
T Consensus 182 p~~~~~~~-~~~-~~-~~-~~~~--~vGD~~~~Di~~a~~~G~~~ 220 (257)
T TIGR01458 182 KTFFLEAL-RAT-GC-EP-EEAV--MIGDDCRDDVGGAQDCGMRG 220 (257)
T ss_pred HHHHHHHH-HHh-CC-Ch-hhEE--EECCCcHHHHHHHHHcCCeE
Confidence 34555443 222 11 22 1223 478885 9999999999964
No 243
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=24.56 E-value=55 Score=37.38 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=23.4
Q ss_pred cCCceEeccccccccccCCcEEEEEECCeecceeee
Q 001520 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMY 78 (1061)
Q Consensus 43 sSPFHVRFGK~qgvLr~~eK~V~i~VNG~~~~~~Mk 78 (1061)
..||.|++|... .|+|++||+++++.=+
T Consensus 290 ~~p~~v~iG~~~--------~v~i~~nG~~vdl~~~ 317 (331)
T PRK10856 290 QAPYKLKIGAPA--------AVQIQYQGKPVDLSRF 317 (331)
T ss_pred CceEEEEEcCCC--------ceEEEECCEEccCCcc
Confidence 359999999985 3899999999998644
No 244
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=22.76 E-value=2.9e+02 Score=35.68 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=68.5
Q ss_pred CCCChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCCCCCccchh----------hh
Q 001520 878 VDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPDGLFPSLFR----------EV 947 (1061)
Q Consensus 878 KDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPdsLf~AL~R----------EV 947 (1061)
.|.+.+++.+..+.+++.|.+++-||+=...-|...-.=+ ++..+.++.-.+ +..+.. .|
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l--------GI~~~~v~~G~e--l~~l~~~el~~~~~~~~V 617 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV--------GLDAGEVLIGSD--IETLSDDELANLAERTTL 617 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc--------CCCccCceeHHH--HHhCCHHHHHHHHhhCcE
Confidence 5888999999999999999999999997655555444333 343333333211 111111 23
Q ss_pred hccCchHHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhc--CCCC
Q 001520 948 IRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKV--GIPR 995 (1061)
Q Consensus 948 I~KrPeeFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraV--GIP~ 995 (1061)
..+-.-+-|..+++.++.. .-.+|--|+..||+-|-+++ ||..
T Consensus 618 fAr~sPe~K~~IV~~Lq~~-----G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 618 FARLTPMHKERIVTLLKRE-----GHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred EEEcCHHHHHHHHHHHHHC-----CCEEEEECCCcchHHHHHhCCEEEEe
Confidence 3333445688888888864 35678899999998888874 6554
No 245
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=22.26 E-value=1.1e+02 Score=35.88 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHC----CCeEEEEccchhhHHHHHHHHHHhcccCCc
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKEN----GYQLLFLSARAIVQAYHTRRFLFTLKQDGK 925 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~N----GYkILYLSARpIgqA~~TR~yL~~i~Q~g~ 925 (1061)
..+-++.+||||-|.+ ||. +-+|+.+.++.|.+| -.++++||.-.-.....-.+.|. .+-+.
T Consensus 33 ~~~fgfafDIDGVL~R----G~~--------~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS--~~Lgv 98 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFR----GHR--------PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELS--ALLGV 98 (389)
T ss_pred CCceeEEEecccEEEe----cCC--------CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHH--HhhCC
Confidence 4556799999999986 322 348899999999999 68999999753333333333443 22366
Q ss_pred CCCCCceecC
Q 001520 926 ALPDGPVVIS 935 (1061)
Q Consensus 926 ~LP~GPVLLS 935 (1061)
.+++=-|+.|
T Consensus 99 ~Vs~dqviqS 108 (389)
T KOG1618|consen 99 EVSADQVIQS 108 (389)
T ss_pred ccCHHHHHhh
Confidence 6765555554
No 246
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=21.84 E-value=49 Score=40.06 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=40.3
Q ss_pred HHHCCCeEEEEccchh-hHHHHHHHHHHhcccCCcCCCCCcee-cCCCCCCccchhhhhccCchHHHHHHHHHHHhhCCC
Q 001520 892 IKENGYQLLFLSARAI-VQAYHTRRFLFTLKQDGKALPDGPVV-ISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPS 969 (1061)
Q Consensus 892 I~~NGYkILYLSARpI-gqA~~TR~yL~~i~Q~g~~LP~GPVL-LSPdsLf~AL~REVI~KrPeeFKIacL~dI~~LFP~ 969 (1061)
++..| +.+-+||-|- +...-.|+|| |...=-|.=| ....+.+..+...+ .-++.|.. .++.+|..
T Consensus 105 ~~~~g-~~vVVTAsPrvmVEpFake~L------G~D~VvGTEL~v~~~G~~TG~~~G~---n~~ek~~~---rl~~~~g~ 171 (498)
T PLN02499 105 FSSCD-KRVVVTRMPRVMVERFAKEHL------RADEVIGSELVVNRFGFATGFIRGT---DVDQSVAN---RVANLFVD 171 (498)
T ss_pred HHcCC-eEEEEeCCHHHHHHHHHHHhc------CCceEEeeeEEEeeccEEEEEEecC---ccHHHHHH---HHHHHhCc
Confidence 45678 8888888765 4444566666 2221113322 22124444444432 22333344 45566654
Q ss_pred CCCCEEEecCCCchhH
Q 001520 970 DCNPFYAGFGNRDTDE 985 (1061)
Q Consensus 970 ~~nPFyAGFGNR~TDv 985 (1061)
+ .| +.|+|++.+|-
T Consensus 172 ~-~~-~vg~~~~~~~~ 185 (498)
T PLN02499 172 E-RP-QLGLGRISASS 185 (498)
T ss_pred c-Cc-eecccCCcccc
Confidence 2 34 55899887554
No 247
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.47 E-value=84 Score=29.55 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=32.4
Q ss_pred ChhhHHHHHHHHHHCCCeEEEEccchhhHHHHHHHHHHhcccCCcCCCCCceecCCC
Q 001520 881 SQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPDGPVVISPD 937 (1061)
Q Consensus 881 TH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~g~~LP~GPVLLSPd 937 (1061)
+...|-+.-..|++.||.|. .+.++|+.||.+|.++.+.
T Consensus 32 SRtaVwK~Iq~Lr~~G~~I~------------------s~~~kGY~L~~~~~ll~~~ 70 (79)
T COG1654 32 SRTAVWKHIQQLREEGVDIE------------------SVRGKGYLLPQLPDLLPQE 70 (79)
T ss_pred cHHHHHHHHHHHHHhCCceE------------------ecCCCceeccCccccCcHH
Confidence 46788899999999999998 3466799999999888653
No 248
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=21.29 E-value=76 Score=33.40 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEecCCCchhHHhHhhcCCC
Q 001520 954 EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 954 eFKIacL~dI~~LFP~~~nPFyAGFGNR~TDv~AYraVGIP 994 (1061)
.=|-..|+.|+..+.-.....+ +||+..||+.+.+.+|+.
T Consensus 195 vsKg~al~~l~~~~gi~~~~v~-afGD~~NDi~Ml~~ag~~ 234 (270)
T PRK10513 195 VNKGTGVKSLAEHLGIKPEEVM-AIGDQENDIAMIEYAGVG 234 (270)
T ss_pred CChHHHHHHHHHHhCCCHHHEE-EECCchhhHHHHHhCCce
Confidence 5588889999888765433454 999999999999999974
No 249
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=20.61 E-value=1.2e+02 Score=34.96 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=35.4
Q ss_pred cEEEEecCCcccccccccccccccCCCCChhhHHHHHHHHHHCCCeEEEEccchh
Q 001520 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAI 907 (1061)
Q Consensus 853 KIVISDIDGTITKSDvlGhIlP~LGKDWTH~GVAkLYskI~~NGYkILYLSARpI 907 (1061)
-.||||-||-|..- +-+-||+++.++.|+..|-+++++|.-..
T Consensus 23 DtfifDcDGVlW~g------------~~~ipGs~e~l~~L~~~gK~i~fvTNNSt 65 (306)
T KOG2882|consen 23 DTFIFDCDGVLWLG------------EKPIPGSPEALNLLKSLGKQIIFVTNNST 65 (306)
T ss_pred CEEEEcCCcceeec------------CCCCCChHHHHHHHHHcCCcEEEEeCCCc
Confidence 35999999999861 22359999999999999999999987543
Done!