Query 001520
Match_columns 1061
No_of_seqs 264 out of 391
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 16:47:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_821-825//hhsearch_pdb/001520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ltq_A Polynucleotide kinase; 1.0 1 1 75.7 8.6 130 849-995 156-293 (301)
2 3ocu_A Lipoprotein E; hydrolas 1.0 1 1 74.8 6.5 114 850-987 56-188 (262)
3 3pct_A Class C acid phosphatas 1.0 1 1 74.1 7.8 113 851-987 57-188 (260)
4 2i33_A Acid phosphatase; HAD s 1.0 1 1 63.8 4.0 113 851-988 58-188 (258)
5 2obb_A Hypothetical protein; s 1.0 1 1 55.0 7.9 67 851-929 2-68 (142)
6 2gmw_A D,D-heptose 1,7-bisphos 1.0 1 1 54.8 11.0 131 851-995 24-171 (211)
7 3zvl_A Bifunctional polynucleo 1.0 1 1 54.0 9.9 126 850-994 56-213 (416)
8 1k1e_A Deoxy-D-mannose-octulos 1.0 1 1 53.2 7.1 112 852-994 8-121 (180)
9 1l6r_A Hypothetical protein TA 1.0 1 1 53.1 8.4 131 852-994 5-191 (227)
10 3m1y_A Phosphoserine phosphata 1.0 1 1 53.0 4.4 141 852-1008 4-190 (217)
No 1
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=1.00 E-value=1 Score=75.68 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCC---
Q ss_conf 18992999926785214433344466----66778971469999999998799099981334667999999987400---
Q 001520 849 KWNTRIVISDVDGTITKSDVLGQFMP----LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLK--- 921 (1061)
Q Consensus 849 ~~~dKIVISDIDGTITKSDvlGhIlP----~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~--- 921 (1061)
+...+.++.|+|||+... .+..| .++...+.+|+.+++..++++||++.++|+|+..++..++.||..+.
T Consensus 156 ~~~~~~i~iD~dgtl~~~---~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~ 232 (301)
T 1ltq_A 156 PGKPKAVIFDVDGTLAKM---NGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWV 232 (301)
T ss_dssp TTSCEEEEEETBTTTBCC---SSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCC---CCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
T ss_conf 554656999377871144---67783556406666798689999999997798699993898433142899998604322
Q ss_pred CCCCCCCCCCEECCCCCCCCCCHHHHHCCCCH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 18967999955629999874100334214934-889999999985389999978980488731177576239999
Q 001520 922 QDGKALPDGPVVISPDGLFPSLFREVIRRAPH-EFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIPR 995 (1061)
Q Consensus 922 Q~G~~LP~GPVLLSPDsLf~AL~REVI~KkPe-eFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~AYr~VGIP~ 995 (1061)
++.++|+-..++...+. .++|+ +.+..+++.+.. ++ .... ..+|++..|+.+++++||++
T Consensus 233 ~~~~~~~~~~~~~~~~~----------~~kp~p~~~~~~~~~~~~--~~-~~~~-~~vgD~~~di~~a~~aG~~~ 293 (301)
T 1ltq_A 233 EDIAGVPLVMQCQREQG----------DTRKDDVVKEEIFWKHIA--PH-FDVK-LAIDDRTQVVEMWRRIGVEC 293 (301)
T ss_dssp HHTTCCCCSEEEECCTT----------CCSCHHHHHHHHHHHHTT--TT-CEEE-EEEECCHHHHHHHHHTTCCE
T ss_pred CCCCCCCCHHEEECCCC----------CCCHHHHHHHHHHHHHHC--CC-CCEE-EEECCCHHHHHHHHHCCCEE
T ss_conf 22358982113553678----------876889999999999734--36-4248-88278178999999849917
No 2
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=1.00 E-value=1 Score=74.83 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCCCCCCCCC-------CCCC-C-------CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHH
Q ss_conf 89929999267852144333-------4446-6-------6677897146999999999879909998133466-79999
Q 001520 850 WNTRIVISDVDGTITKSDVL-------GQFM-P-------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV-QAYHT 913 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvl-------GhIl-P-------~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIg-qA~~T 913 (1061)
...++||+|||||++-.... +..+ + ..+...+.+|+.+|+..+++.|++++|+|+|+-. +...|
T Consensus 56 ~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T 135 (262)
T 3ocu_A 56 GKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGT 135 (262)
T ss_dssp TCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 99849999899768777065665322556689889999998278877725999999999879949998189850219999
Q ss_pred HHHHHHCCCCCCCCCC-C--CEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH
Q ss_conf 9998740018967999-9--556299998741003342149348899999999853899999789804887311775
Q 001520 914 RRFLFTLKQDGKALPD-G--PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEIS 987 (1061)
Q Consensus 914 R~yL~~i~Q~G~~LP~-G--PVLLSPDsLf~AL~REVI~KkPeeFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~A 987 (1061)
..||. ..++|. . .|++.++ ..+|...+..|... ...+++-+|+...|..+
T Consensus 136 ~~~L~-----~lGi~~~~~~~Lilr~~---------------~~~K~~~r~~l~~~----Gy~iv~~vGD~~~Dl~~ 188 (262)
T 3ocu_A 136 IDDMK-----RLGFNGVEESAFYLKKD---------------KSAKAARFAEIEKQ----GYEIVLYVGDNLDDFGN 188 (262)
T ss_dssp HHHHH-----HHTCSCCSGGGEEEESS---------------CSCCHHHHHHHHHT----TEEEEEEEESSGGGGCS
T ss_pred HHHHH-----HCCCCCCCCCCEECCCC---------------CCCHHHHHHHHHHC----CCCEEEEECCCHHHHCC
T ss_conf 99999-----82969556541350688---------------89749999999964----99789997998678265
No 3
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=1.00 E-value=1 Score=74.08 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCEEEEECCCCCCCCCCC-------CCCC-C-------CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH-HHHHHH
Q ss_conf 9929999267852144333-------4446-6-------6677897146999999999879909998133466-799999
Q 001520 851 NTRIVISDVDGTITKSDVL-------GQFM-P-------LVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV-QAYHTR 914 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvl-------GhIl-P-------~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIg-qA~~TR 914 (1061)
..++||+|||||++-+... +..+ + .-|...+.+|+.++++.+++.|++++|+|+|+.. +...|.
T Consensus 57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~ 136 (260)
T 3pct_A 57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV 136 (260)
T ss_dssp -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHH
T ss_conf 99989998985674781677763246777887899999983788778039999999998799599970898613099999
Q ss_pred HHHHHCCCCCCCCCCC---CEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH
Q ss_conf 9987400189679999---556299998741003342149348899999999853899999789804887311775
Q 001520 915 RFLFTLKQDGKALPDG---PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEIS 987 (1061)
Q Consensus 915 ~yL~~i~Q~G~~LP~G---PVLLSPDsLf~AL~REVI~KkPeeFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~A 987 (1061)
.+|. ..++|.. ++++.++ ..+|...+..|... ...+.+-+|+...|..+
T Consensus 137 ~~L~-----~lGi~~~~~~~Lilr~~---------------~~~K~~~r~~L~~~----gy~iv~~iGD~~~Dl~~ 188 (260)
T 3pct_A 137 DDMK-----RLGFTGVNDKTLLLKKD---------------KSNKSVRFKQVEDM----GYDIVLFVGDNLNDFGD 188 (260)
T ss_dssp HHHH-----HHTCCCCSTTTEEEESS---------------CSSSHHHHHHHHTT----TCEEEEEEESSGGGGCG
T ss_pred HHHH-----HCCCCCCCCCEEEECCC---------------CCCHHHHHHHHHHC----CCCEEEEECCCHHHCCC
T ss_conf 9999-----81959656651573589---------------98769999999956----99789997998677075
No 4
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=1.00 E-value=1 Score=63.75 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCCCCCCCC-----CCCCCCCCC----------CCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Q ss_conf 9929999267852144333-----444666677----------8971469999999998799099981334667999999
Q 001520 851 NTRIVISDVDGTITKSDVL-----GQFMPLVGV----------DWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRR 915 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvl-----GhIlP~IGK----------DWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~ 915 (1061)
.-++||+|||||++.+... ....+. .. ....+|+.+++..++++|+++.++|+|+......+..
T Consensus 58 ~~kavifDlDGTLld~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~ 136 (258)
T 2i33_A 58 KKPAIVLDLDETVLDNSPHQAMSVKTGKGY-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIK 136 (258)
T ss_dssp SEEEEEECSBTTTEECHHHHHHHHHHSCCT-TTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 997899938666767989999998356636-7899999970899758339999999998899799984995657999999
Q ss_pred HHHHCCCCCCCCC---CCCEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 9874001896799---995562999987410033421493488999999998538999997898048873117757
Q 001520 916 FLFTLKQDGKALP---DGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISY 988 (1061)
Q Consensus 916 yL~~i~Q~G~~LP---~GPVLLSPDsLf~AL~REVI~KkPeeFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~AY 988 (1061)
+|. ..+|+ ...++++++.. .+|+.++. +... ...+ ...+|+..+|+.+=
T Consensus 137 ~L~-----~~Gl~~v~~~~vi~~~~~~----------~K~~~~~~-----~~~~---~~~~-~l~VGDs~~Di~aA 188 (258)
T 2i33_A 137 NLE-----RVGAPQATKEHILLQDPKE----------KGKEKRRE-----LVSQ---THDI-VLFFGDNLSDFTGF 188 (258)
T ss_dssp HHH-----HHTCSSCSTTTEEEECTTC----------CSSHHHHH-----HHHH---HEEE-EEEEESSGGGSTTC
T ss_pred HHH-----HCCCCCCCCCEEEECCCCC----------CCCHHHHH-----HHHH---CCCC-EEEECCCHHHHCCC
T ss_conf 999-----8698967776689779987----------88289999-----9972---8996-59969877776356
No 5
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=1.00 E-value=1 Score=54.98 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=53.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9929999267852144333444666677897146999999999879909998133466799999998740018967999
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~G~~LP~ 929 (1061)
+-|+|++|+||||..++. +.+++. .+++.+..++++++||+|+.+|+|+......+..||. .+++|-
T Consensus 2 ~~k~i~~DlDGTL~~~~~-----~~i~~~--~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~-----~~gi~~ 68 (142)
T 2obb_A 2 NAMTIAVDFDGTIVEHRY-----PRIGEE--IPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCR-----ARGLEF 68 (142)
T ss_dssp CCCEEEECCBTTTBCSCT-----TSCCCB--CTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHH-----TTTCCC
T ss_pred CCEEEEEECCCCCCCCCC-----CCCCCC--CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH-----HCCCCE
T ss_conf 970999978678898997-----654656--9899999999998899899992899644999999999-----839984
No 6
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=1.00 E-value=1 Score=54.80 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH------------HHHHHHHHHH
Q ss_conf 9929999267852144333444666677897146999999999879909998133466------------7999999987
Q 001520 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIV------------QAYHTRRFLF 918 (1061)
Q Consensus 851 ~dKIVISDIDGTITKSDvlGhIlP~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIg------------qA~~TR~yL~ 918 (1061)
.-|++++|+||||+..+. .......-...+|+.++...++++||++..+|+++.. .....+..|.
T Consensus 24 ~~k~v~~D~DGTL~~~~~---~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHG---YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLA 100 (211)
T ss_dssp CBCEEEECSBTTTBCCCS---SCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEECCCC---CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 398999939997188998---66671227688689999999998899599997959867884679999999999999999
Q ss_pred HCCCCCCCCCCCCEECCCC---CCCCCCHHHHHCCCC--HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC
Q ss_conf 4001896799995562999---987410033421493--48899999999853899999789804887311775762399
Q 001520 919 TLKQDGKALPDGPVVISPD---GLFPSLFREVIRRAP--HEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGI 993 (1061)
Q Consensus 919 ~i~Q~G~~LP~GPVLLSPD---sLf~AL~REVI~KkP--eeFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~AYr~VGI 993 (1061)
..+++--.++.+++ ...+....++..++| +.|+..+ +.+ .+=|. .-+ .+|++.+|+.+-+++|+
T Consensus 101 -----~~gl~f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~-~~l-gi~~~--~~~--~VGD~~~Di~~a~~aG~ 169 (211)
T 2gmw_A 101 -----DRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSAR-DYL-HIDMA--ASY--MVGDKLEDMQAAVAANV 169 (211)
T ss_dssp -----HTTCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHH-HHH-TBCGG--GCE--EEESSHHHHHHHHHTTC
T ss_pred -----HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHC-CCCHH--HEE--EECCCHHHHHHHHHCCC
T ss_conf -----85996577997876877756666766757999989999999-983-99989--979--98488888999998799
Q ss_pred CC
Q ss_conf 99
Q 001520 994 PR 995 (1061)
Q Consensus 994 P~ 995 (1061)
..
T Consensus 170 ~~ 171 (211)
T 2gmw_A 170 GT 171 (211)
T ss_dssp SE
T ss_pred CE
T ss_conf 46
No 7
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=1.00 E-value=1 Score=53.96 Aligned_cols=126 Identities=19% Similarity=0.344 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCHH---------HHHHHHHHHHH
Q ss_conf 89929999267852144333444666677897--14699999999987990999813346---------67999999987
Q 001520 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKENGYQLLFLSARAI---------VQAYHTRRFLF 918 (1061)
Q Consensus 850 ~~dKIVISDIDGTITKSDvlGhIlP~IGKDWT--H~GVAkLYskI~~NGYkILYLSARpI---------gqA~~TR~yL~ 918 (1061)
...|+|++|+||||..... |..++....+|. .+|+.++...++++||++.-+|.++- ......+..|.
T Consensus 56 ~~~k~v~fD~DGTL~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~ 134 (416)
T 3zvl_A 56 PQGKVAAFDLDGTLITTRS-GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLE 134 (416)
T ss_dssp CCSSEEEECSBTTTEECSS-CSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7770899968897253078-766788989950335459999999997899699996983014787799999999999999
Q ss_pred HCCCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCH--HHHHHHHHHHHH--HCCCCCCCEEEECCCCC------------
Q ss_conf 40018967999955629999874100334214934--889999999985--38999997898048873------------
Q 001520 919 TLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKA--LFPSDCNPFYAGFGNRD------------ 982 (1061)
Q Consensus 919 ~i~Q~G~~LP~GPVLLSPDsLf~AL~REVI~KkPe--eFKIacL~dIk~--LFP~~~nPFYAGFGNR~------------ 982 (1061)
..+++---++. .+ ++..++|+ .|..++ +.+.. ...+ ..-+| +|++.
T Consensus 135 -----~lgl~fd~i~~-~~--------~~~~~KP~p~~~~~a~-~~l~~~~~v~~-~~~l~--VGDs~gr~~~~~~~~~~ 196 (416)
T 3zvl_A 135 -----KLGVPFQVLVA-TH--------AGLNRKPVSGMWDHLQ-EQANEGIPISV-EDSVF--VGDAAGRLANWAPGRKK 196 (416)
T ss_dssp -----HHTSCCEEEEE-CS--------SSTTSTTSSHHHHHHH-HHSSTTCCCCG-GGCEE--ECSCSCBCTTSSTTCCS
T ss_pred -----HCCCCEEEEEE-CC--------CCCCCCCCHHHHHHHH-HHHCCCCCCCH-HHEEE--EECCCCCCCCCCCCCCC
T ss_conf -----76997799997-89--------8988899889999999-97177888777-99499--97899986556666555
Q ss_pred -----HHHHHHHHCCCC
Q ss_conf -----117757623999
Q 001520 983 -----TDEISYLKVGIP 994 (1061)
Q Consensus 983 -----TDv~AYr~VGIP 994 (1061)
+|+.+=+.+||+
T Consensus 197 ~d~s~~Di~~A~~aGi~ 213 (416)
T 3zvl_A 197 KDFSCADRLFALNVGLP 213 (416)
T ss_dssp CCSCCHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHCCCC
T ss_conf 68774469999975986
No 8
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=1.00 E-value=1 Score=53.17 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=67.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9299992678521443334446666778--97146999999999879909998133466799999998740018967999
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVD--WSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD 929 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~IGKD--WTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~G~~LP~ 929 (1061)
-|+|++|+|||++.++.. +.+ -++. +-.+...++...++++||++..+|+|+...+...-..+ ++..
T Consensus 8 ik~i~~DlDGTL~~~~~~--~~~-~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~l--------gl~~ 76 (180)
T 1k1e_A 8 IKFVITDVDGVLTDGQLH--YDA-NGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADL--------GIKL 76 (180)
T ss_dssp CCEEEEECTTTTSCSEEE--EET-TEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHH--------TCCE
T ss_pred CEEEEEECCCCCCCCCEE--ECC-CCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHC--------CCCE
T ss_conf 719999377986988863--445-76441011643299999999889969999398968999999974--------9800
Q ss_pred CCEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 95562999987410033421493488999999998538999997898048873117757623999
Q 001520 930 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 930 GPVLLSPDsLf~AL~REVI~KkPeeFKIacL~dIk~LFP~~~nPFYAGFGNR~TDv~AYr~VGIP 994 (1061)
. |. ..+| |-..+..+...+....... ..+|++.+|+.+-+.+|+.
T Consensus 77 --~-------~~-------~~k~---k~~~~~~~~~~~~~~~~~~-~~vGD~~~Di~~~~~ag~~ 121 (180)
T 1k1e_A 77 --F-------FL-------GKLE---KETACFDLMKQAGVTAEQT-AYIGDDSVDLPAFAACGTS 121 (180)
T ss_dssp --E-------EE-------SCSC---HHHHHHHHHHHHTCCGGGE-EEEECSGGGHHHHHHSSEE
T ss_pred --E-------EC-------CCCC---CHHHHHHHHHHCCCCHHHE-EEECCCHHHHHHHHHCCCE
T ss_conf --0-------26-------8899---6999999999839797898-8889998799999985996
No 9
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=1.00 E-value=1 Score=53.06 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=75.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH----HCCCCCC-C
Q ss_conf 9299992678521443334446666778971469999999998799099981334667999999987----4001896-7
Q 001520 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKENGYQLLFLSARAIVQAYHTRRFLF----TLKQDGK-A 926 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP~IGKDWTH~GVAkLYskI~~NGYkILYLSARpIgqA~~TR~yL~----~i~Q~G~-~ 926 (1061)
-|+|++|+|||+..++. .+ .+...+..++++++|++++.+|+|+...+.....-|. -|..+|. .
T Consensus 5 ~kli~~DlDGTLl~~~~--~i---------~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~~~I~~NGa~i 73 (227)
T 1l6r_A 5 IRLAAIDVDGNLTDRDR--LI---------STKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIM 73 (227)
T ss_dssp CCEEEEEHHHHSBCTTS--CB---------CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCSCEEEGGGTEE
T ss_pred EEEEEEECCCCCCCCCC--CC---------CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEE
T ss_conf 37999978898748998--37---------98999999999988997999879980789999998399984999689599
Q ss_pred C-CCCCEE-CCCC-----------------CCC------CCC-------HHHH------------------HCCCC-HHH
Q ss_conf 9-999556-2999-----------------987------410-------0334------------------21493-488
Q 001520 927 L-PDGPVV-ISPD-----------------GLF------PSL-------FREV------------------IRRAP-HEF 955 (1061)
Q Consensus 927 L-P~GPVL-LSPD-----------------sLf------~AL-------~REV------------------I~KkP-eeF 955 (1061)
. |.|-++ .... ..+ ..+ ..+. ++=.| ..-
T Consensus 74 ~~~~~~~i~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~ 153 (227)
T 1l6r_A 74 FDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGED 153 (227)
T ss_dssp ECTTSCEEESSCSHHHHHHHHHHTTTSSCBCCGGGGGCSSSEEEBCCGGGHHHHHHHHHTTTEEEEEETTEEEEEETTCS
T ss_pred EECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCHHHHHHHHHHCCEEEEECCCEEEEECCCCC
T ss_conf 92899789974558899999999998547965235405324415785299999999998669899966848999619999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 999999998538999997898048873117757623999
Q 001520 956 KIACLEDIKALFPSDCNPFYAGFGNRDTDEISYLKVGIP 994 (1061)
Q Consensus 956 KIacL~dIk~LFP~~~nPFYAGFGNR~TDv~AYr~VGIP 994 (1061)
|-..++.++..+....... .+||+..+|..+.+.+|+.
T Consensus 154 K~~~l~~l~~~~~~~~~~~-~~iGD~~nD~~m~~~ag~~ 191 (227)
T 1l6r_A 154 KAFAVNKLKEMYSLEYDEI-LVIGDSNNDMPMFQLPVRK 191 (227)
T ss_dssp HHHHHHHHHHHTTCCGGGE-EEECCSGGGHHHHTSSSEE
T ss_pred HHHHHHHHHHHHCCCHHHE-EEECCCHHHHHHHHHCCCE
T ss_conf 7999999999969598999-9988967869999976965
No 10
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=1.00 E-value=1 Score=53.03 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred CCEEEEECCCCCCCCCCCCCCCC----------C---------------------C------------CCCCCHHHHHHH
Q ss_conf 92999926785214433344466----------6---------------------6------------778971469999
Q 001520 852 TRIVISDVDGTITKSDVLGQFMP----------L---------------------V------------GVDWSQTGVAHL 888 (1061)
Q Consensus 852 dKIVISDIDGTITKSDvlGhIlP----------~---------------------I------------GKDWTH~GVAkL 888 (1061)
-|+||||+||||+.++..-.+.. . + ..-...+|+.++
T Consensus 4 ~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 3m1y_A 4 QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMPLKLAKEVCESLPLFEGALEL 83 (217)
T ss_dssp CEEEEEECBTTTBSSCHHHHHHHHTTCHHHHTTCCCC----CCCHHHHHHHHHHTTTTCBHHHHHHHHTTCCBCBTHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 70899957898878404999999839648999999999747678999999999872378799999999638678778999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC--CCEECCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999879909998133466799999998740018967999--9556299998741-00334214934889999999985
Q 001520 889 FSAIKENGYQLLFLSARAIVQAYHTRRFLFTLKQDGKALPD--GPVVISPDGLFPS-LFREVIRRAPHEFKIACLEDIKA 965 (1061)
Q Consensus 889 YskI~~NGYkILYLSARpIgqA~~TR~yL~~i~Q~G~~LP~--GPVLLSPDsLf~A-L~REVI~KkPeeFKIacL~dIk~ 965 (1061)
+..++++||++..+|+.+..... .++.. .+++. ..++...+..+.. +..++...+| |-..++.+..
T Consensus 84 l~~l~~~g~~~~i~S~~~~~~~~---~~l~~-----~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~---k~~~~~~~~~ 152 (217)
T 3m1y_A 84 VSALKEKNYKVVCFSGGFDLATN---HYRDL-----LHLDAAFSNTLIVENDALNGLVTGHMMFSHS---KGEMLLVLQR 152 (217)
T ss_dssp HHHHHTTTEEEEEEEEEEHHHHH---HHHHH-----HTCSEEEEEEEEEETTEEEEEEEESCCSTTH---HHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCHHHHH---HHHHH-----CCCCHHCCCEEEEECCEEEEEECCCCCCCCC---HHHHHHHHHH
T ss_conf 99999879989999298166899---99998-----3960432040587578787554367778988---3999999998
Q ss_pred HCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCEE
Q ss_conf 3899999789804887311775762399997689988999555
Q 001520 966 LFPSDCNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEVV 1008 (1061)
Q Consensus 966 LFP~~~nPFYAGFGNR~TDv~AYr~VGIP~sRIFiINpkGeI~ 1008 (1061)
.+.......+ .||++.+|+.+-+.+|++. .+|+..+++
T Consensus 153 ~~g~~~~~~i-~vGDs~~Di~~a~~aG~~~----~~~~~~~l~ 190 (217)
T 3m1y_A 153 LLNISKTNTL-VVGDGANDLSMFKHAHIKI----AFNAKEVLK 190 (217)
T ss_dssp HHTCCSTTEE-EEECSGGGHHHHTTCSEEE----EESCCHHHH
T ss_pred HCCCCHHHEE-EEECCHHHHHHHHHCCCEE----EECCCHHHH
T ss_conf 7399976889-8968888899999779758----889549999
Done!