BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001521
(1061 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFN 59
+KL V V DA+NL+P D +G S PYV + ++KT T LNP WNE+ F
Sbjct: 16 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 75
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102
+ P + I+ + TTRN+F+G + S+ +K
Sbjct: 76 LK--PSDKDRRLSVEIWD---WDRTTRNDFMGSLSFGVSELMK 113
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 353 PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVA 407
P VK+ + S+ ++K R T +W+++F F + L V +WD D
Sbjct: 39 PYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWD---WDRT 95
Query: 408 APPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM---EGGGAYS 447
F+G + F V+E+ ++ P A WY++ E G Y+
Sbjct: 96 TRNDFMGSLSFGVSEL-MKMP-----ASGWYKLLNQEEGEYYN 132
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 39/119 (32%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+GR++L+ V DE HV V KNL+PM NG
Sbjct: 4 RGRIYLKA------EVTDEKLHVT---------------------VRDAKNLIPMDP-NG 35
Query: 666 KSTTDAYVVAKY------ASKWIRTRTVSDSLEPRWNEQYTWKVY--DPCTVLALGVFD 716
S D YV K SK +T+T+ +L P+WNE +T+K+ D L++ ++D
Sbjct: 36 LS--DPYVKLKLIPDPKNESK-QKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWD 91
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFN 59
+KL V V DA+NL+P D +G S PYV + ++KT T LNP WNE+ F
Sbjct: 17 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK 76
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102
+ P + I+ + TTRN+F+G + S+ +K
Sbjct: 77 LK--PSDKDRRLSVEIWD---WDRTTRNDFMGSLSFGVSELMK 114
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 353 PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVA 407
P VK+ + S+ ++K R T +W+++F F + L V +WD D
Sbjct: 40 PYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWD---WDRT 96
Query: 408 APPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM---EGGGAYS 447
F+G + F V+E+ ++ P A WY++ E G Y+
Sbjct: 97 TRNDFMGSLSFGVSEL-MKMP-----ASGWYKLLNQEEGEYYN 133
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 39/119 (32%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+GR++L+ V DE HV V KNL+PM NG
Sbjct: 5 RGRIYLKA------EVTDEKLHVT---------------------VRDAKNLIPMDP-NG 36
Query: 666 KSTTDAYVVAKY------ASKWIRTRTVSDSLEPRWNEQYTWKVY--DPCTVLALGVFD 716
S D YV K SK +T+T+ +L P+WNE +T+K+ D L++ ++D
Sbjct: 37 LS--DPYVKLKLIPDPKNESK-QKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWD 92
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQV 66
L V+V+ A +LL D G S P+ +++ R +THT ++LNP WN+ F P +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF----PIKD 70
Query: 67 FTDMFELNIFHDKAYGPTTRNNFLGRIRL 95
D+ E+ +F + P +FLG++ +
Sbjct: 71 IHDVLEVTVFDEDGDKPP---DFLGKVAI 96
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
VG +++ V+ +LL +GKS D + + + + ++T TV +L P WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAAD-FSGKS--DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 704 YDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751
D VL + VFD E+G +P +GKV I + ++ G+
Sbjct: 69 KDIHDVLEVTVFD-------EDGD----KPPDFLGKVAIPLLSIRDGQ 105
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 331 VEKMHYLFVRVVKARFL-----PTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGR 385
V+ + L V+V+KA L K P + + N R+++ + EW++ F F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF-- 66
Query: 386 DSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEI 423
+ LEV+V+D D PP FLG + + I
Sbjct: 67 PIKDIHDVLEVTVFDE---DGDKPPDFLGKVAIPLLSI 101
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNV- 60
LIV V DA+NL+P D +G S PYV + ++KT T LNP WNE F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 61 --GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL 118
K ++ ++++ ++ T+RN+F+G + S+ K G + L
Sbjct: 234 ESDKDRRLSVEIWDWDL--------TSRNDFMGSLSFGISELQKAGVDGWF-------KL 278
Query: 119 LSWIQGE 125
LS +GE
Sbjct: 279 LSQEEGE 285
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 353 PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVA 407
P VK+ + + S+ ++K + + EW++TF F + L V +WD D+
Sbjct: 195 PYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWD---WDLT 251
Query: 408 APPGFLGGICFDVTEI 423
+ F+G + F ++E+
Sbjct: 252 SRNDFMGSLSFGISEL 267
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 655 KNLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKV 703
KNL+PM NG S D YV K + +T+T+ SL P WNE + +++
Sbjct: 182 KNLVPMDP-NGLS--DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALE 57
A +KL V V DA+NL+P D +G S PYV + ++KT T LNP WNE+
Sbjct: 16 ADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 75
Query: 58 FNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102
F + P + I+ + TTRN+F G + S+ K
Sbjct: 76 FKLK--PSDKDRRLSVEIWD---WDRTTRNDFXGSLSFGVSELXK 115
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 353 PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVA 407
P VK+ + S+ ++K R T +W+++F F + L V +WD D
Sbjct: 41 PYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWD---WDRT 97
Query: 408 APPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
F G + F V+E+ + P A WY++
Sbjct: 98 TRNDFXGSLSFGVSEL-XKXP-----ASGWYKL 124
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 16/106 (15%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNV- 60
LIV V DA+NL+P D +G S PYV + ++KT T LNP WNE F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 61 --GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKG 104
K ++ ++++ ++ T+RN+F+G + S+ K G
Sbjct: 93 ESDKDRRLSVEIWDWDL--------TSRNDFMGSLSFGISELQKAG 130
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 353 PVVKIA-VANSRVESKPARRT-SCF---EWDQTFAFGRDSPESSSFLEVSVWDPPRGDVA 407
P VK+ + + + ESK +T C EW++TF F + L V +WD D+
Sbjct: 54 PYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD---WDLT 110
Query: 408 APPGFLGGICFDVTEI 423
+ F+G + F ++E+
Sbjct: 111 SRNDFMGSLSFGISEL 126
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNVGKP 63
V V +ARNL+P D +G S PYV + ++KT T LNP WNE FN+ KP
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL-KP 82
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102
V + ++ + T+RN+F+G + S+ +K
Sbjct: 83 GDV-ERRLSVEVWD---WDRTSRNDFMGAMSFGVSELLK 117
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 377 WDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQ 436
W++TF F + L V VWD D + F+G + F V+E+ L+ P D
Sbjct: 72 WNETFVFNLKPGDVERRLSVEVWD---WDRTSRNDFMGAMSFGVSEL-LKAPVDG----- 122
Query: 437 WYRM---EGGGAYS 447
WY++ E G Y+
Sbjct: 123 WYKLLNQEEGEYYN 136
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY---GQ-----------RRKTHTAVRDLNPT 51
LI+ ++ ARNL+P+D +G S P+V + GQ +R+T + LNP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 52 WNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALI 109
WN+ + + Q+ E+ ++ Y + N+FLG I LSS+ +
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWD---YDRFSSNDFLGEVLIDLSSTSHLDNTPR--- 132
Query: 110 YYPLEKKS 117
+YPL++++
Sbjct: 133 WYPLKEQT 140
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+ I +L+V V++A L +G S+PY I Q T T LNP WN +F +
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI- 442
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRL 95
++ D+ L +F + P ++FLGR +
Sbjct: 443 --KDLYQDVLCLTLFDRDQFSP---DDFLGRTEI 471
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 636 ARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRW 695
AR +G + + VI L K NGKS + Y S+ TRT+ D+L P+W
Sbjct: 378 ARSQKTSGIGRLMVHVIEATELKACKP-NGKS--NPYCEISMGSQSYTTRTIQDTLNPKW 434
Query: 696 NEQYTWKVYDPCT-VLALGVFD 716
N + + D VL L +FD
Sbjct: 435 NFNCQFFIKDLYQDVLCLTLFD 456
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPY--VVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
KL + V+ A+NL+ KD P+ VV+D GQ T T L+P WN+ + +GK
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGK- 62
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
+D +++++ K FLG +RL S+
Sbjct: 63 ----SDSVTISVWNHKKIHKKQGAGFLGCVRLLSN 93
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPY--VVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
K+ + V+ A+NL KD P+ +V+D GQ T T L+P WN+ + VGK
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK- 64
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
TD +++++ K FLG +RL S+
Sbjct: 65 ----TDSITISVWNHKKIHKKQGAGFLGCVRLLSN 95
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L KD G+S PYV + +++T T +LNP W E F
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-- 75
Query: 66 VFTDMFELNIFHD--------KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+D ++ + + K ++FLG+ + E ++Y L+K++
Sbjct: 76 --SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRT 130
Query: 118 LLSWIQGEVGLKI 130
S + G + L I
Sbjct: 131 DKSAVSGAIRLHI 143
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 654 CKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALG 713
C L K G S D YV + RT+T+ +L P W E + ++ ++ + +
Sbjct: 25 CAQGLQAKDKTGSS--DPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVR 82
Query: 714 VFD 716
V D
Sbjct: 83 VLD 85
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYV-VIDYYGQRR----KTHTAVRDLNPTWNEALEFNVG 61
+IV ++ ARNL D GTS PYV V Y +R KT T R+LNP +NE+ F++
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI- 76
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLS 96
P + + + DK +RN+ +G+I LS
Sbjct: 77 -PTEKLRETTIIITVMDK--DKLSRNDVIGKIYLS 108
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 23/141 (16%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY--GQRR-----KTHTAVRDLNPTWNEALEFN 59
L V+VV +L KD G S PYV + Y + R +T T + LNP WNE F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL 119
V P +FE +F + TR++FLG++ + S E+ + P K L
Sbjct: 83 VN--PSNHRLLFE--VFDENR---LTRDDFLGQVDVPLSHL--PTEDPTMERPYTFKDFL 133
Query: 120 -------SWIQGEVGLKIYYV 133
S ++G + LK+ Y+
Sbjct: 134 LRPRSHKSRVKGFLRLKMAYM 154
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 682 IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVR 741
++T+T+ +L P+WNE++ ++V L VFD EN TR D +G+V
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFD-------EN---RLTRDDF-LGQVD 110
Query: 742 IRISTLET 749
+ +S L T
Sbjct: 111 VPLSHLPT 118
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQRR------KTHTAVRDLNPTWNEALEFNVGK 62
V V+ L KD G S PYV + Y +T T + LNP WNE + F V
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH- 82
Query: 63 PPQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
PQ +FE +F + TR++FLG++
Sbjct: 83 -PQQHRLLFE--VFDENR---LTRDDFLGQV 107
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 682 IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDS 717
++T+T+ SL P+WNE+ ++V+ L VFD
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDE 95
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A +L KD +G S PYV I R+K T + LNP +NE +F+V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNVG 61
L V ++ A NL D G S PYV + +RKT LNPT+NEAL F+V
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQRR------KTHTAVRDLNPTWNEALEFNVGK 62
V+V+ L KD G S PYV + Y +T T + LNP WNE + F V
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL- 70
Query: 63 PPQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
PQ +FE +F + TR++FLG++
Sbjct: 71 -PQRHRILFE--VFDENRL---TRDDFLGQV 95
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 682 IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDS 717
++T+T+ SL P+WNE+ ++V + VFD
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE 83
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A +L KD +G S PYV I R+K T + LNP +NE +F+V
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 79
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNVG 61
L V ++ A NL D G S PYV + +RKT LNPT+NEAL F+V
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 11 VVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
++ A+ L P D +G + PYV + + +T T NP WNE L+++
Sbjct: 33 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLS 96
+ +++ + +G N F+G R S
Sbjct: 93 MQRKTLRISVCDEDKFG---HNEFIGETRFS 120
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 11 VVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
++ A+ L P D +G + PYV + + +T T NP WNE L+++
Sbjct: 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLS 96
+ +++ + +G N F+G R S
Sbjct: 95 MQRKTLRISVCDEDKFG---HNEFIGETRFS 122
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY-GQRRKTHTAV--RDLNPTWNEALEFNVGKP 63
L V+++ A+ L KD GTS P+V I ++ K T V ++LNP WNE F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRL 95
+V + L + Y +RN+ +G + +
Sbjct: 88 EKVVQRILYLQVLD---YDRFSRNDPIGEVSI 116
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
KLIV V RNL+ G S PYV + RRKTH + + LNP ++++ +F+
Sbjct: 24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 60 VGKP 63
V P
Sbjct: 83 VSLP 86
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-----RKTHTAVRDLNPTWNEALEFN 59
+LIV ++ A++L ++ +PYV I + R R+T T + L P WN+ ++
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
+ M E+ ++ D+A + FLG I
Sbjct: 81 PVHRREFRERMLEITLW-DQARVREEESEFLGEI 113
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-----RKTHTAVRDLNPTWNEALEFN 59
+LIV ++ A++L ++ +PYV I + R R+T T + L P WN+ ++
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
+ M E+ ++ D+A + FLG I
Sbjct: 78 PVHRREFRERMLEITLW-DQARVREEESEFLGEI 110
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 11 VVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFT 68
+V++ + +PK G P V + + +++KT +LNP WNE LEF++ P F+
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFS 69
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A L D GTS PYV + ++K T + LNP +NE F V
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain
Of Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In
The Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In
The Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A L D GTS PYV + ++K T + LNP +NE F V
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 75
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A L D GTS PYV + ++K T + LNP +NE F V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A L D GTS PYV + ++K T + LNP +NE F V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRK---THTAVRDLNPTWNEALEFNV 60
+L+V ++ A L D GTS PYV + ++K T + LNP +NE F V
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYV---VAKYASKWIRTRTVSDSLEPRWNEQYTWKV---- 703
++G + ++ T+D YV + K T+ +L P +NEQ+T+KV
Sbjct: 22 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81
Query: 704 -YDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762
V+A+ FD + ++ D IG+ ++ ++T++ G V L
Sbjct: 82 LAGKTLVMAVYDFDRF------------SKHDI-IGEFKVPMNTVDFGHVTEEWRDLQSA 128
Query: 763 GSNGMTKMGEIEVAVRFIRTSPTL 786
K+G+I ++R++ T+ L
Sbjct: 129 EKEEQEKLGDICFSLRYVPTAGKL 152
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNV 60
KL V +++A+NL D G S PYV I ++KT LNP +NE+ F V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 5 QKLIVEVVDARNL--LPKDGHGTSSPYVVIDYYGQRRKT---HTAV---RDLNPTWNEAL 56
++L V ++ + L + K+ + P V+++ +G R T TAV NP W+
Sbjct: 495 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 554
Query: 57 EFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR 92
EF V P L F + Y +++N+F+G+
Sbjct: 555 EFEVTVPD------LALVRFMVEDYDSSSKNDFIGQ 584
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 5 QKLIVEVVDARNL--LPKDGHGTSSPYVVIDYYGQRRKT---HTAV---RDLNPTWNEAL 56
++L V ++ + L + K+ + P V+++ +G R T TAV NP W+
Sbjct: 497 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 556
Query: 57 EFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR 92
EF V P L F + Y +++N+F+G+
Sbjct: 557 EFEVTVPD------LALVRFMVEDYDSSSKNDFIGQ 586
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNV 60
KL V +++A+NL D G S PYV I ++KT LNP +NE+ F V
Sbjct: 19 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 78
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNV 60
KL V +++A+NL D G S PYV I ++KT LNP +NE+ F V
Sbjct: 18 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 77
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination
Site In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination
Sites In Synaptotagmin I C2b Domain
Length = 159
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFNV 60
KL V +++A+NL D G S PYV I ++KT LNP +NE+ F V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 522 QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAV 579
Q QK+ V+ TP WNE +F +E T+ + + A+G +PL V
Sbjct: 42 QDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPV 99
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
L + V+ ++L+ +DG +PYV + +RKT + + NPT+NE L ++
Sbjct: 22 LFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL 119
+ +L++ ++ N FLG I L F +E + +Y L + L
Sbjct: 81 SKETLRQRELQLSVLSAESL---RENFFLGGITLPLKDF-NLSKETVKWYQLTAATYL 134
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVI---DYYGQRRKTHTAVRD--LNPTWNEALEFNVG 61
LIV ++ +L D +G S P+V + G++ K T ++ LNP +NE +++
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDI- 97
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK---KSL 118
K + +++++ Y N+++G +L S KGE +Y K K +
Sbjct: 98 KHSDLAKKSLDISVWD---YDIGKSNDYIGGCQLGIS---AKGERLKHWYECLKNKDKKI 151
Query: 119 LSWIQ 123
W Q
Sbjct: 152 ERWHQ 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,033,222
Number of Sequences: 62578
Number of extensions: 1293014
Number of successful extensions: 2171
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2090
Number of HSP's gapped (non-prelim): 80
length of query: 1061
length of database: 14,973,337
effective HSP length: 109
effective length of query: 952
effective length of database: 8,152,335
effective search space: 7761022920
effective search space used: 7761022920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)