Query 001521
Match_columns 1061
No_of_seqs 547 out of 3999
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 7.4E-40 1.6E-44 311.5 15.8 156 905-1061 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 6.7E-36 1.5E-40 351.4 43.8 543 3-782 434-1163(1227)
3 COG5038 Ca2+-dependent lipid-b 99.9 4.1E-25 8.8E-30 261.1 35.3 393 334-785 435-845 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 1.9E-23 4.1E-28 238.5 22.8 213 489-746 167-393 (421)
5 KOG1028 Ca2+-dependent phospho 99.9 7.5E-23 1.6E-27 233.6 21.9 211 329-578 161-393 (421)
6 KOG2059 Ras GTPase-activating 99.9 5.4E-23 1.2E-27 230.5 16.5 274 490-808 6-304 (800)
7 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.1E-21 2.4E-26 192.8 16.1 144 490-634 1-150 (150)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 6.2E-21 1.3E-25 180.5 15.2 124 647-775 2-125 (126)
9 cd04016 C2_Tollip C2 domain pr 99.8 1.3E-20 2.7E-25 177.3 14.9 120 4-132 1-121 (121)
10 KOG1326 Membrane-associated pr 99.8 4.4E-20 9.6E-25 214.4 21.5 91 486-578 610-703 (1105)
11 PF11696 DUF3292: Protein of u 99.8 9.3E-21 2E-25 215.9 15.7 238 813-1059 56-391 (642)
12 KOG2059 Ras GTPase-activating 99.8 1.1E-20 2.4E-25 212.1 15.9 126 1-135 1-127 (800)
13 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.2E-20 9.1E-25 178.0 13.8 127 6-134 1-127 (127)
14 cd04016 C2_Tollip C2 domain pr 99.8 7.4E-20 1.6E-24 172.1 14.8 119 644-779 1-121 (121)
15 KOG1030 Predicted Ca2+-depende 99.8 4.6E-20 1E-24 175.5 10.5 115 643-775 4-118 (168)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.4E-19 3E-24 174.1 13.7 122 7-131 1-126 (126)
17 cd08378 C2B_MCTP_PRT_plant C2 99.8 1E-18 2.2E-23 166.0 13.9 118 336-458 1-121 (121)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.4E-18 3E-23 170.9 14.9 137 646-796 1-148 (150)
19 cd08682 C2_Rab11-FIP_classI C2 99.8 1E-18 2.2E-23 168.1 13.5 117 647-777 1-125 (126)
20 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.7E-18 3.8E-23 163.8 14.1 118 6-128 1-125 (126)
21 KOG1030 Predicted Ca2+-depende 99.8 8.2E-19 1.8E-23 167.0 11.1 116 4-130 5-120 (168)
22 cd08375 C2_Intersectin C2 doma 99.8 4.3E-18 9.4E-23 164.9 15.7 119 3-132 13-135 (136)
23 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.7E-18 1.2E-22 161.7 15.4 120 6-134 1-121 (121)
24 cd04042 C2A_MCTP_PRT C2 domain 99.8 6E-18 1.3E-22 161.6 15.3 119 646-780 1-120 (121)
25 cd08681 C2_fungal_Inn1p-like C 99.8 3.1E-18 6.7E-23 162.9 13.0 117 5-132 1-118 (118)
26 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.2E-18 1.1E-22 161.1 14.2 118 7-132 2-121 (121)
27 cd04024 C2A_Synaptotagmin-like 99.8 5.8E-18 1.3E-22 163.7 14.1 122 5-132 1-128 (128)
28 cd08376 C2B_MCTP_PRT C2 domain 99.8 9.3E-18 2E-22 159.1 15.0 115 6-133 1-115 (116)
29 cd04015 C2_plant_PLD C2 domain 99.8 8.5E-18 1.8E-22 167.2 15.3 125 644-780 6-158 (158)
30 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.6E-18 2.1E-22 163.2 14.0 121 6-133 1-133 (133)
31 cd08378 C2B_MCTP_PRT_plant C2 99.8 8.9E-18 1.9E-22 159.6 13.2 115 6-132 1-119 (121)
32 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.3E-17 2.8E-22 158.4 14.3 119 647-779 2-121 (121)
33 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.4E-17 3E-22 158.6 14.3 118 7-131 2-120 (121)
34 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.1E-17 2.5E-22 161.0 13.6 121 646-780 1-126 (127)
35 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.4E-17 5.3E-22 157.1 15.3 118 5-132 1-118 (119)
36 cd08678 C2_C21orf25-like C2 do 99.7 2.5E-17 5.4E-22 158.3 15.2 120 7-136 1-123 (126)
37 cd08395 C2C_Munc13 C2 domain t 99.7 1.2E-17 2.7E-22 156.6 12.7 107 6-117 1-114 (120)
38 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.9E-17 8.5E-22 156.6 16.0 121 644-782 3-125 (126)
39 cd08394 C2A_Munc13 C2 domain f 99.7 1.9E-17 4.1E-22 154.1 13.1 100 334-443 1-102 (127)
40 cd08375 C2_Intersectin C2 doma 99.7 5.1E-17 1.1E-21 157.4 16.2 119 641-779 11-135 (136)
41 cd08377 C2C_MCTP_PRT C2 domain 99.7 4.3E-17 9.4E-22 155.4 15.3 118 645-779 1-118 (119)
42 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.9E-17 6.2E-22 157.2 13.8 115 5-132 1-121 (121)
43 cd08400 C2_Ras_p21A1 C2 domain 99.7 6.6E-17 1.4E-21 155.0 15.8 120 5-135 4-125 (126)
44 cd08681 C2_fungal_Inn1p-like C 99.7 2.5E-17 5.5E-22 156.6 12.6 116 645-779 1-118 (118)
45 cd08678 C2_C21orf25-like C2 do 99.7 5.3E-17 1.2E-21 156.1 14.8 121 647-783 1-123 (126)
46 cd04046 C2_Calpain C2 domain p 99.7 7.3E-17 1.6E-21 154.9 15.7 121 4-135 2-124 (126)
47 cd04036 C2_cPLA2 C2 domain pre 99.7 4.1E-17 8.8E-22 155.3 13.7 115 6-133 1-118 (119)
48 cd08381 C2B_PI3K_class_II C2 d 99.7 2.5E-17 5.4E-22 156.8 11.6 105 4-113 12-121 (122)
49 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 7E-17 1.5E-21 154.7 14.4 118 6-130 1-122 (123)
50 cd08376 C2B_MCTP_PRT C2 domain 99.7 9.7E-17 2.1E-21 152.1 15.0 113 647-780 2-115 (116)
51 cd04046 C2_Calpain C2 domain p 99.7 1.8E-16 4E-21 152.2 16.5 120 644-781 2-123 (126)
52 cd08382 C2_Smurf-like C2 domai 99.7 8.5E-17 1.8E-21 153.7 13.8 119 6-130 1-122 (123)
53 cd04024 C2A_Synaptotagmin-like 99.7 9.5E-17 2.1E-21 155.2 14.2 121 645-779 1-128 (128)
54 cd04027 C2B_Munc13 C2 domain s 99.7 1.1E-16 2.5E-21 153.8 14.4 118 6-130 2-127 (127)
55 cd04010 C2B_RasA3 C2 domain se 99.7 4.6E-17 1E-21 159.0 11.6 107 6-117 1-124 (148)
56 cd08381 C2B_PI3K_class_II C2 d 99.7 1.1E-16 2.5E-21 152.2 13.8 100 645-759 13-121 (122)
57 cd04015 C2_plant_PLD C2 domain 99.7 1.5E-16 3.2E-21 158.3 15.0 121 4-133 6-158 (158)
58 cd08677 C2A_Synaptotagmin-13 C 99.7 5.3E-17 1.1E-21 149.8 10.6 103 3-113 12-118 (118)
59 cd04017 C2D_Ferlin C2 domain f 99.7 1.7E-16 3.7E-21 154.3 14.6 125 5-135 1-134 (135)
60 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.2E-16 4.9E-21 150.4 14.5 117 647-778 2-120 (121)
61 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.6E-16 3.5E-21 152.2 13.4 119 646-778 1-123 (123)
62 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.9E-16 4.2E-21 154.1 14.0 119 646-779 1-132 (133)
63 cd04050 C2B_Synaptotagmin-like 99.7 1.8E-16 3.8E-21 147.1 12.3 103 6-117 1-104 (105)
64 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.9E-16 4E-21 151.7 12.6 103 644-760 14-125 (125)
65 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.4E-16 7.3E-21 149.7 14.2 103 644-760 14-125 (125)
66 cd04028 C2B_RIM1alpha C2 domai 99.7 4.2E-16 9E-21 151.2 14.9 105 645-762 29-139 (146)
67 cd04044 C2A_Tricalbin-like C2 99.7 2.4E-16 5.2E-21 151.5 13.2 121 4-134 1-124 (124)
68 cd04039 C2_PSD C2 domain prese 99.7 1.8E-16 3.9E-21 147.0 11.8 95 5-104 1-99 (108)
69 cd04014 C2_PKC_epsilon C2 doma 99.7 5.1E-16 1.1E-20 150.6 15.4 116 4-134 3-130 (132)
70 cd08691 C2_NEDL1-like C2 domai 99.7 5.3E-16 1.1E-20 149.4 15.2 119 6-130 2-136 (137)
71 cd04028 C2B_RIM1alpha C2 domai 99.7 2.7E-16 5.8E-21 152.5 13.1 106 4-117 28-140 (146)
72 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.9E-16 4.2E-21 151.6 11.2 107 3-114 13-125 (125)
73 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.3E-16 5E-21 151.0 11.6 108 3-114 13-128 (128)
74 cd04041 C2A_fungal C2 domain f 99.7 1.9E-16 4.2E-21 148.4 10.8 104 5-115 1-108 (111)
75 cd08677 C2A_Synaptotagmin-13 C 99.7 5.6E-16 1.2E-20 143.0 13.2 100 643-759 12-118 (118)
76 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.1E-16 6.7E-21 150.0 11.9 107 3-114 13-125 (125)
77 KOG0696 Serine/threonine prote 99.7 1.9E-17 4.1E-22 175.9 3.9 110 4-125 179-293 (683)
78 cd08688 C2_KIAA0528-like C2 do 99.7 2.8E-16 6.1E-21 147.0 10.8 105 7-115 1-109 (110)
79 cd04036 C2_cPLA2 C2 domain pre 99.7 7.7E-16 1.7E-20 146.5 13.9 113 647-780 2-118 (119)
80 cd08391 C2A_C2C_Synaptotagmin_ 99.7 7.9E-16 1.7E-20 147.2 13.8 114 645-779 1-121 (121)
81 cd04027 C2B_Munc13 C2 domain s 99.7 9.5E-16 2.1E-20 147.4 14.4 126 646-777 2-127 (127)
82 cd08395 C2C_Munc13 C2 domain t 99.7 5.4E-16 1.2E-20 145.6 12.2 102 646-762 1-113 (120)
83 cd04010 C2B_RasA3 C2 domain se 99.7 5.4E-16 1.2E-20 151.5 12.2 116 646-777 1-147 (148)
84 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.1E-15 2.3E-20 146.8 14.1 104 643-760 14-123 (124)
85 cd04050 C2B_Synaptotagmin-like 99.7 4.9E-16 1.1E-20 144.1 11.3 99 336-444 1-104 (105)
86 cd04043 C2_Munc13_fungal C2 do 99.7 1.7E-15 3.6E-20 146.0 15.4 117 6-135 2-123 (126)
87 cd08680 C2_Kibra C2 domain fou 99.7 4.4E-16 9.4E-21 147.6 10.9 107 3-113 12-124 (124)
88 cd08685 C2_RGS-like C2 domain 99.7 4.1E-16 9E-21 147.4 10.6 105 3-113 10-119 (119)
89 cd04011 C2B_Ferlin C2 domain s 99.7 6.7E-16 1.4E-20 144.9 11.7 105 334-443 3-111 (111)
90 cd08373 C2A_Ferlin C2 domain f 99.6 3.1E-15 6.7E-20 144.2 15.5 119 11-137 2-120 (127)
91 cd08392 C2A_SLP-3 C2 domain fi 99.6 2E-15 4.4E-20 144.5 14.0 102 644-759 14-127 (128)
92 cd08394 C2A_Munc13 C2 domain f 99.6 1.3E-15 2.8E-20 141.9 12.2 100 644-762 1-102 (127)
93 cd08387 C2A_Synaptotagmin-8 C2 99.6 1E-15 2.2E-20 146.9 12.1 107 3-114 14-123 (124)
94 cd08685 C2_RGS-like C2 domain 99.6 1.4E-15 3.1E-20 143.8 12.7 101 645-759 12-119 (119)
95 cd08388 C2A_Synaptotagmin-4-11 99.6 1.5E-15 3.3E-20 145.8 12.9 108 3-114 14-127 (128)
96 cd04031 C2A_RIM1alpha C2 domai 99.6 1.1E-15 2.3E-20 147.2 11.8 107 3-114 14-125 (125)
97 cd04018 C2C_Ferlin C2 domain t 99.6 1.2E-15 2.7E-20 149.2 11.6 106 6-116 1-126 (151)
98 cd08386 C2A_Synaptotagmin-7 C2 99.6 2E-15 4.4E-20 145.2 12.2 108 3-114 14-124 (125)
99 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.9E-15 4.2E-20 145.0 12.0 107 3-114 14-123 (124)
100 cd04044 C2A_Tricalbin-like C2 99.6 3.2E-15 6.9E-20 143.7 13.5 119 644-780 1-123 (124)
101 cd08385 C2A_Synaptotagmin-1-5- 99.6 4.4E-15 9.6E-20 142.5 14.4 103 644-760 15-123 (124)
102 cd08688 C2_KIAA0528-like C2 do 99.6 1.7E-15 3.7E-20 141.7 11.2 101 647-761 1-109 (110)
103 KOG1326 Membrane-associated pr 99.6 4.9E-16 1.1E-20 181.1 9.1 381 336-746 207-703 (1105)
104 cd04039 C2_PSD C2 domain prese 99.6 2.5E-15 5.4E-20 139.3 12.0 96 645-751 1-99 (108)
105 cd04049 C2_putative_Elicitor-r 99.6 3.4E-15 7.4E-20 143.2 13.2 109 5-117 1-110 (124)
106 cd04014 C2_PKC_epsilon C2 doma 99.6 6.4E-15 1.4E-19 142.9 15.2 115 644-781 3-130 (132)
107 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.6E-15 5.6E-20 150.0 12.4 109 3-115 25-138 (162)
108 cd08389 C2A_Synaptotagmin-14_1 99.6 2.6E-15 5.7E-20 143.4 11.9 107 3-115 14-124 (124)
109 cd04038 C2_ArfGAP C2 domain pr 99.6 7.8E-15 1.7E-19 143.0 15.2 90 5-102 2-91 (145)
110 cd08382 C2_Smurf-like C2 domai 99.6 4.5E-15 9.7E-20 141.9 13.2 118 647-777 2-122 (123)
111 cd08388 C2A_Synaptotagmin-4-11 99.6 6.9E-15 1.5E-19 141.3 14.5 103 644-760 15-127 (128)
112 cd04051 C2_SRC2_like C2 domain 99.6 2.2E-15 4.7E-20 144.9 10.9 118 6-128 1-125 (125)
113 cd04031 C2A_RIM1alpha C2 domai 99.6 6.1E-15 1.3E-19 141.9 13.8 102 644-760 15-125 (125)
114 cd04017 C2D_Ferlin C2 domain f 99.6 7.6E-15 1.6E-19 142.8 14.6 120 490-616 2-132 (135)
115 cd04030 C2C_KIAA1228 C2 domain 99.6 6.6E-15 1.4E-19 142.1 14.0 105 644-760 15-127 (127)
116 cd08386 C2A_Synaptotagmin-7 C2 99.6 6.3E-15 1.4E-19 141.7 13.7 103 644-760 15-124 (125)
117 PF04842 DUF639: Plant protein 99.6 9E-15 1.9E-19 167.6 16.2 184 851-1055 482-673 (683)
118 cd08521 C2A_SLP C2 domain firs 99.6 1.1E-14 2.3E-19 139.8 14.1 102 644-759 13-123 (123)
119 cd04011 C2B_Ferlin C2 domain s 99.6 5E-15 1.1E-19 139.0 11.5 105 4-115 3-110 (111)
120 cd04041 C2A_fungal C2 domain f 99.6 4E-15 8.7E-20 139.4 10.6 99 645-760 1-107 (111)
121 cd04045 C2C_Tricalbin-like C2 99.6 7.2E-15 1.6E-19 139.4 12.2 104 5-117 1-105 (120)
122 cd04032 C2_Perforin C2 domain 99.6 5.8E-15 1.3E-19 140.1 11.4 93 3-101 26-118 (127)
123 cd08521 C2A_SLP C2 domain firs 99.6 6.6E-15 1.4E-19 141.2 11.9 106 3-113 12-123 (123)
124 cd04030 C2C_KIAA1228 C2 domain 99.6 8.5E-15 1.8E-19 141.3 12.5 109 3-114 14-127 (127)
125 cd04013 C2_SynGAP_like C2 doma 99.6 2.1E-14 4.6E-19 138.7 15.0 124 644-782 10-141 (146)
126 cd04013 C2_SynGAP_like C2 doma 99.6 1.6E-14 3.4E-19 139.6 14.1 122 5-136 11-142 (146)
127 cd08373 C2A_Ferlin C2 domain f 99.6 1.9E-14 4.2E-19 138.6 14.8 115 651-783 2-119 (127)
128 cd08383 C2A_RasGAP C2 domain ( 99.6 1.4E-14 3E-19 137.7 13.4 115 7-132 2-117 (117)
129 cd04038 C2_ArfGAP C2 domain pr 99.6 3.2E-14 6.8E-19 138.7 15.7 91 644-749 1-91 (145)
130 cd08675 C2B_RasGAP C2 domain s 99.6 7E-15 1.5E-19 142.8 10.6 106 7-117 1-122 (137)
131 cd04021 C2_E3_ubiquitin_ligase 99.6 2.4E-14 5.1E-19 137.1 14.1 117 5-130 2-124 (125)
132 cd08390 C2A_Synaptotagmin-15-1 99.6 1.4E-14 3E-19 139.0 12.5 108 3-115 12-123 (123)
133 cd08389 C2A_Synaptotagmin-14_1 99.6 2.6E-14 5.7E-19 136.5 13.7 102 644-760 15-123 (124)
134 cd08390 C2A_Synaptotagmin-15-1 99.6 3E-14 6.6E-19 136.6 14.2 104 643-760 12-122 (123)
135 cd08680 C2_Kibra C2 domain fou 99.6 1.4E-14 2.9E-19 137.4 11.5 103 643-759 12-124 (124)
136 cd04043 C2_Munc13_fungal C2 do 99.6 3.7E-14 8.1E-19 136.6 14.8 118 490-618 2-123 (126)
137 cd04052 C2B_Tricalbin-like C2 99.6 1.3E-14 2.8E-19 135.9 11.2 101 22-134 9-110 (111)
138 cd08690 C2_Freud-1 C2 domain f 99.6 4.8E-14 1E-18 137.7 15.5 119 647-781 4-138 (155)
139 cd04018 C2C_Ferlin C2 domain t 99.6 1.4E-14 3E-19 141.7 11.8 106 646-762 1-126 (151)
140 cd04032 C2_Perforin C2 domain 99.6 1.9E-14 4.1E-19 136.6 12.2 96 641-751 24-121 (127)
141 cd04040 C2D_Tricalbin-like C2 99.6 2.3E-14 5.1E-19 135.6 12.9 112 7-127 1-113 (115)
142 cd08676 C2A_Munc13-like C2 dom 99.6 1.3E-14 2.8E-19 142.2 11.2 100 2-113 25-153 (153)
143 cd04051 C2_SRC2_like C2 domain 99.6 1.7E-14 3.7E-19 138.6 11.5 113 646-775 1-125 (125)
144 cd08407 C2B_Synaptotagmin-13 C 99.6 1.2E-14 2.5E-19 140.2 10.1 93 3-99 13-112 (138)
145 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.9E-14 6.4E-19 142.4 13.2 105 642-760 24-137 (162)
146 cd08406 C2B_Synaptotagmin-12 C 99.6 8.5E-15 1.8E-19 141.4 9.0 102 644-761 14-123 (136)
147 cd08690 C2_Freud-1 C2 domain f 99.6 7.5E-14 1.6E-18 136.4 15.1 124 7-135 4-139 (155)
148 cd04049 C2_putative_Elicitor-r 99.6 3E-14 6.4E-19 136.7 12.0 103 645-761 1-108 (124)
149 PLN03008 Phospholipase D delta 99.6 3.1E-14 6.7E-19 167.9 14.6 105 666-782 74-179 (868)
150 cd08406 C2B_Synaptotagmin-12 C 99.5 1.9E-14 4.1E-19 139.0 10.6 93 3-99 13-110 (136)
151 cd08692 C2B_Tac2-N C2 domain s 99.5 6E-14 1.3E-18 132.9 12.3 93 2-99 11-109 (135)
152 cd04026 C2_PKC_alpha_gamma C2 99.5 3.9E-14 8.5E-19 137.3 11.2 107 4-117 12-123 (131)
153 cd04045 C2C_Tricalbin-like C2 99.5 5.8E-14 1.3E-18 133.2 11.9 104 645-763 1-105 (120)
154 cd08675 C2B_RasGAP C2 domain s 99.5 4.4E-14 9.5E-19 137.2 11.0 105 647-766 1-125 (137)
155 cd04037 C2E_Ferlin C2 domain f 99.5 5.9E-14 1.3E-18 134.2 11.7 90 6-101 1-92 (124)
156 cd08676 C2A_Munc13-like C2 dom 99.5 5E-14 1.1E-18 138.0 11.4 100 641-759 24-153 (153)
157 cd04009 C2B_Munc13-like C2 dom 99.5 9.8E-14 2.1E-18 134.6 13.0 92 644-749 15-118 (133)
158 cd08407 C2B_Synaptotagmin-13 C 99.5 3.2E-14 7E-19 137.1 9.4 104 644-761 14-125 (138)
159 cd08402 C2B_Synaptotagmin-1 C2 99.5 6.6E-14 1.4E-18 136.6 11.5 107 2-115 12-123 (136)
160 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.1E-14 4.6E-19 139.6 7.9 106 3-115 11-121 (133)
161 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.3E-14 1.1E-18 137.2 10.7 102 644-761 14-123 (136)
162 cd04009 C2B_Munc13-like C2 dom 99.5 6.9E-14 1.5E-18 135.7 11.4 97 3-102 14-118 (133)
163 cd04040 C2D_Tricalbin-like C2 99.5 1.5E-13 3.3E-18 130.0 13.1 111 647-774 1-113 (115)
164 cd08383 C2A_RasGAP C2 domain ( 99.5 1.7E-13 3.6E-18 130.2 13.4 112 647-779 2-117 (117)
165 cd04026 C2_PKC_alpha_gamma C2 99.5 1.6E-13 3.4E-18 133.1 13.1 104 645-763 13-123 (131)
166 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.6E-14 1E-18 137.7 9.2 105 642-762 12-124 (136)
167 PLN03008 Phospholipase D delta 99.5 1.4E-13 2.9E-18 162.6 14.4 127 4-139 13-183 (868)
168 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.2E-14 7E-19 138.7 7.5 106 3-115 13-123 (136)
169 cd08410 C2B_Synaptotagmin-17 C 99.5 1.5E-13 3.1E-18 133.6 11.7 108 2-115 11-123 (135)
170 cd00275 C2_PLC_like C2 domain 99.5 4.1E-13 8.8E-18 129.8 14.6 117 5-132 2-127 (128)
171 cd08405 C2B_Synaptotagmin-7 C2 99.5 9.3E-14 2E-18 135.5 9.9 102 644-761 14-123 (136)
172 KOG0696 Serine/threonine prote 99.5 2E-14 4.4E-19 153.1 5.1 100 491-597 182-288 (683)
173 cd08405 C2B_Synaptotagmin-7 C2 99.5 4.4E-14 9.6E-19 137.8 7.1 106 3-115 13-123 (136)
174 cd08691 C2_NEDL1-like C2 domai 99.5 4.9E-13 1.1E-17 128.9 14.1 118 646-777 2-136 (137)
175 cd08408 C2B_Synaptotagmin-14_1 99.5 1.8E-13 4E-18 132.8 11.2 93 3-99 13-111 (138)
176 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.2E-13 2.6E-18 134.4 9.4 103 643-761 12-122 (134)
177 cd08410 C2B_Synaptotagmin-17 C 99.5 4.5E-13 9.7E-18 130.2 13.2 106 642-762 11-124 (135)
178 cd04021 C2_E3_ubiquitin_ligase 99.5 6.7E-13 1.5E-17 127.1 14.1 116 646-777 3-124 (125)
179 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.7E-13 5.9E-18 131.9 11.4 93 3-99 12-109 (134)
180 cd04048 C2A_Copine C2 domain f 99.5 2.7E-13 5.9E-18 129.1 10.8 99 10-115 5-114 (120)
181 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.3E-13 2.8E-18 134.1 8.4 104 643-762 11-122 (133)
182 cd04052 C2B_Tricalbin-like C2 99.5 3.2E-13 6.9E-18 126.5 10.3 98 349-457 11-109 (111)
183 cd08409 C2B_Synaptotagmin-15 C 99.5 1.9E-13 4.1E-18 133.0 9.0 103 644-761 14-124 (137)
184 cd04035 C2A_Rabphilin_Doc2 C2 99.4 1.6E-12 3.4E-17 124.5 14.2 99 644-757 14-121 (123)
185 cd00275 C2_PLC_like C2 domain 99.4 1.8E-12 3.9E-17 125.3 14.6 115 646-779 3-127 (128)
186 cd08686 C2_ABR C2 domain in th 99.4 5E-13 1.1E-17 122.9 10.0 82 337-421 1-91 (118)
187 cd08409 C2B_Synaptotagmin-15 C 99.4 1.6E-13 3.4E-18 133.6 6.9 92 3-99 13-109 (137)
188 cd08408 C2B_Synaptotagmin-14_1 99.4 1.6E-12 3.4E-17 126.4 13.6 104 643-761 13-125 (138)
189 KOG1013 Synaptic vesicle prote 99.4 8.5E-14 1.8E-18 144.9 4.9 223 491-758 95-338 (362)
190 cd08686 C2_ABR C2 domain in th 99.4 7.2E-13 1.6E-17 121.9 10.4 80 7-99 1-92 (118)
191 cd00276 C2B_Synaptotagmin C2 d 99.4 2.2E-13 4.7E-18 132.9 7.5 107 3-116 12-123 (134)
192 cd08692 C2B_Tac2-N C2 domain s 99.4 9.3E-13 2E-17 124.8 11.4 92 486-579 11-110 (135)
193 cd04048 C2A_Copine C2 domain f 99.4 6.6E-13 1.4E-17 126.5 10.4 98 650-761 5-114 (120)
194 cd04037 C2E_Ferlin C2 domain f 99.4 1.2E-12 2.7E-17 125.1 12.0 88 491-580 2-92 (124)
195 cd00276 C2B_Synaptotagmin C2 d 99.4 5.3E-13 1.2E-17 130.1 9.5 103 644-762 13-123 (134)
196 cd04035 C2A_Rabphilin_Doc2 C2 99.4 1.5E-12 3.2E-17 124.8 12.0 97 3-103 13-114 (123)
197 PLN03200 cellulose synthase-in 99.4 6.1E-13 1.3E-17 171.7 11.7 118 642-780 1977-2100(2102)
198 PLN03200 cellulose synthase-in 99.4 6.2E-13 1.3E-17 171.7 11.6 119 4-134 1979-2101(2102)
199 KOG1011 Neurotransmitter relea 99.4 5.7E-13 1.2E-17 147.5 7.2 124 5-135 295-426 (1283)
200 cd04047 C2B_Copine C2 domain s 99.3 4.1E-12 9E-17 119.1 10.1 90 9-102 4-100 (110)
201 KOG1013 Synaptic vesicle prote 99.3 2E-12 4.4E-17 134.7 6.3 208 334-577 92-327 (362)
202 PF00168 C2: C2 domain; Inter 99.3 8.7E-12 1.9E-16 110.7 9.5 82 7-94 1-85 (85)
203 PF06398 Pex24p: Integral pero 99.3 4E-11 8.6E-16 137.0 16.4 180 847-1041 1-195 (359)
204 cd04047 C2B_Copine C2 domain s 99.3 1.3E-11 2.9E-16 115.6 9.8 88 649-751 4-102 (110)
205 KOG1011 Neurotransmitter relea 99.2 4.1E-11 9E-16 133.0 8.0 131 644-780 294-424 (1283)
206 KOG1327 Copine [Signal transdu 99.2 5.5E-10 1.2E-14 126.3 16.9 240 522-812 41-319 (529)
207 PF00168 C2: C2 domain; Inter 99.1 1.6E-10 3.5E-15 102.5 9.3 81 491-573 1-85 (85)
208 cd00030 C2 C2 domain. The C2 d 99.1 4.6E-10 9.9E-15 102.6 10.8 101 7-113 1-102 (102)
209 PLN02270 phospholipase D alpha 99.1 8E-10 1.7E-14 131.3 14.4 127 644-782 7-150 (808)
210 PLN02223 phosphoinositide phos 99.1 9.2E-10 2E-14 125.9 13.7 118 5-132 409-536 (537)
211 KOG1328 Synaptic vesicle prote 99.1 2.7E-11 5.9E-16 136.6 0.5 129 6-139 115-307 (1103)
212 cd08374 C2F_Ferlin C2 domain s 99.0 1.1E-09 2.4E-14 103.9 9.8 94 7-103 2-124 (133)
213 smart00239 C2 Protein kinase C 99.0 2E-09 4.3E-14 98.6 11.1 91 6-102 1-94 (101)
214 cd00030 C2 C2 domain. The C2 d 99.0 2.7E-09 5.9E-14 97.4 10.8 99 647-759 1-102 (102)
215 PLN02270 phospholipase D alpha 99.0 3.8E-09 8.3E-14 125.7 14.1 127 4-139 7-154 (808)
216 cd08374 C2F_Ferlin C2 domain s 98.9 3.9E-09 8.4E-14 100.3 10.1 86 337-426 2-124 (133)
217 PLN02952 phosphoinositide phos 98.9 8.6E-09 1.9E-13 120.8 14.6 119 4-132 469-598 (599)
218 smart00239 C2 Protein kinase C 98.9 6.5E-09 1.4E-13 95.1 10.7 91 647-751 2-96 (101)
219 PLN02223 phosphoinositide phos 98.9 1.4E-08 3E-13 116.4 14.1 120 644-780 408-535 (537)
220 PLN02230 phosphoinositide phos 98.8 1.7E-08 3.6E-13 118.1 12.9 119 4-132 468-597 (598)
221 KOG0169 Phosphoinositide-speci 98.8 1.5E-08 3.3E-13 117.9 11.2 119 6-134 617-745 (746)
222 PLN02952 phosphoinositide phos 98.8 4.8E-08 1E-12 114.7 14.9 120 644-780 469-597 (599)
223 PLN02222 phosphoinositide phos 98.8 3.7E-08 8E-13 115.2 13.7 119 4-132 451-580 (581)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.5E-08 3.2E-13 89.8 7.5 85 7-103 1-89 (109)
225 PLN02228 Phosphoinositide phos 98.8 5.1E-08 1.1E-12 113.7 14.2 121 5-135 431-563 (567)
226 KOG1031 Predicted Ca2+-depende 98.7 3.9E-08 8.4E-13 108.7 9.4 122 4-131 2-134 (1169)
227 PLN02230 phosphoinositide phos 98.7 1.3E-07 2.7E-12 110.9 13.1 106 644-763 468-582 (598)
228 PLN02228 Phosphoinositide phos 98.7 2.1E-07 4.6E-12 108.6 14.5 124 644-782 430-563 (567)
229 KOG1328 Synaptic vesicle prote 98.7 1.4E-08 2.9E-13 115.3 4.2 92 643-748 945-1048(1103)
230 KOG0169 Phosphoinositide-speci 98.7 1.5E-07 3.3E-12 109.7 12.7 120 646-780 617-744 (746)
231 cd08689 C2_fungal_Pkc1p C2 dom 98.6 7.7E-08 1.7E-12 85.3 7.6 85 491-582 1-89 (109)
232 PLN02222 phosphoinositide phos 98.6 2.7E-07 5.9E-12 108.0 14.5 107 644-764 451-566 (581)
233 KOG1031 Predicted Ca2+-depende 98.6 1.2E-07 2.7E-12 104.8 10.2 121 644-780 2-136 (1169)
234 KOG1264 Phospholipase C [Lipid 98.6 2.1E-07 4.6E-12 107.0 10.6 121 5-136 1065-1192(1267)
235 KOG1264 Phospholipase C [Lipid 98.5 5.2E-07 1.1E-11 103.9 10.1 99 645-761 1065-1171(1267)
236 PLN02352 phospholipase D epsil 98.3 2.7E-06 5.8E-11 101.7 12.4 122 4-139 9-136 (758)
237 PLN02352 phospholipase D epsil 98.3 5.2E-06 1.1E-10 99.3 13.1 120 644-783 9-133 (758)
238 KOG1327 Copine [Signal transdu 98.3 6.9E-06 1.5E-10 93.6 13.4 183 362-581 41-236 (529)
239 KOG0905 Phosphoinositide 3-kin 98.0 5.9E-06 1.3E-10 99.2 4.7 109 4-116 1523-1636(1639)
240 PF12416 DUF3668: Cep120 prote 98.0 0.0032 6.9E-08 69.8 25.5 238 337-582 2-296 (340)
241 KOG0905 Phosphoinositide 3-kin 97.9 1.7E-05 3.6E-10 95.6 6.4 102 490-597 1525-1635(1639)
242 cd08683 C2_C2cd3 C2 domain fou 97.6 9E-05 2E-09 68.0 5.6 98 338-440 2-143 (143)
243 PF12416 DUF3668: Cep120 prote 97.6 0.008 1.7E-07 66.7 21.5 236 491-749 2-295 (340)
244 PLN02964 phosphatidylserine de 97.4 0.00018 3.8E-09 86.0 6.4 88 4-104 53-141 (644)
245 KOG2060 Rab3 effector RIM1 and 97.3 0.00036 7.7E-09 75.4 6.7 109 642-762 266-380 (405)
246 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00019 4.2E-09 65.9 4.0 107 7-113 1-143 (143)
247 PLN02964 phosphatidylserine de 97.3 0.00041 8.9E-09 83.0 7.2 87 334-426 53-140 (644)
248 KOG2060 Rab3 effector RIM1 and 97.2 0.00026 5.5E-09 76.5 3.6 110 1-117 265-381 (405)
249 cd08684 C2A_Tac2-N C2 domain f 97.0 0.00073 1.6E-08 57.5 4.0 87 8-100 2-92 (103)
250 cd08684 C2A_Tac2-N C2 domain f 96.7 0.0026 5.5E-08 54.3 5.0 96 492-594 2-102 (103)
251 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.024 5.2E-07 55.2 10.6 130 3-136 7-153 (156)
252 KOG3837 Uncharacterized conser 96.4 0.0031 6.7E-08 68.8 4.6 118 646-780 368-503 (523)
253 KOG3837 Uncharacterized conser 96.2 0.0036 7.9E-08 68.3 3.4 127 5-136 367-506 (523)
254 PF08372 PRT_C: Plant phosphor 95.7 0.054 1.2E-06 52.9 8.9 50 851-900 61-110 (156)
255 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.15 3.2E-06 49.8 11.2 129 486-617 6-151 (156)
256 KOG1265 Phospholipase C [Lipid 95.1 0.036 7.9E-07 66.1 6.4 84 490-581 704-796 (1189)
257 cd08398 C2_PI3K_class_I_alpha 95.0 0.14 3.1E-06 50.7 9.4 91 5-99 8-105 (158)
258 cd08693 C2_PI3K_class_I_beta_d 94.7 0.17 3.7E-06 51.1 9.3 93 5-99 8-119 (173)
259 cd08398 C2_PI3K_class_I_alpha 94.3 0.28 6.2E-06 48.6 9.6 83 491-579 10-106 (158)
260 cd08693 C2_PI3K_class_I_beta_d 93.5 0.42 9.1E-06 48.3 9.4 84 491-578 10-119 (173)
261 cd08380 C2_PI3K_like C2 domain 93.4 0.37 8E-06 48.0 8.8 93 5-99 8-106 (156)
262 KOG1452 Predicted Rho GTPase-a 93.3 0.13 2.9E-06 54.3 5.5 118 3-135 49-169 (442)
263 cd08397 C2_PI3K_class_III C2 d 92.7 0.41 8.8E-06 47.6 7.7 92 23-134 27-124 (159)
264 KOG1452 Predicted Rho GTPase-a 92.6 0.22 4.8E-06 52.8 5.9 131 642-800 48-181 (442)
265 KOG1265 Phospholipase C [Lipid 92.6 0.19 4.1E-06 60.4 5.9 85 334-425 702-796 (1189)
266 PF10358 NT-C2: N-terminal C2 91.8 3.1 6.7E-05 40.5 12.8 124 4-137 6-139 (143)
267 cd08687 C2_PKN-like C2 domain 91.5 1.5 3.2E-05 38.4 8.5 85 24-132 7-92 (98)
268 cd08399 C2_PI3K_class_I_gamma 91.5 1.8 4E-05 43.7 10.7 74 5-79 10-88 (178)
269 cd08380 C2_PI3K_like C2 domain 91.3 1.1 2.5E-05 44.5 9.3 86 491-579 10-107 (156)
270 cd04012 C2A_PI3K_class_II C2 d 91.2 0.77 1.7E-05 46.4 7.9 95 5-99 8-118 (171)
271 PF02453 Reticulon: Reticulon; 91.1 0.047 1E-06 55.2 -1.0 62 980-1041 90-151 (169)
272 PF10358 NT-C2: N-terminal C2 90.8 5 0.00011 39.1 13.2 115 490-615 8-134 (143)
273 cd08397 C2_PI3K_class_III C2 d 90.8 0.89 1.9E-05 45.2 7.7 69 667-746 28-106 (159)
274 cd04012 C2A_PI3K_class_II C2 d 90.4 1.3 2.7E-05 44.9 8.6 88 491-579 10-119 (171)
275 cd08399 C2_PI3K_class_I_gamma 89.6 2.1 4.5E-05 43.3 9.3 70 491-563 12-89 (178)
276 smart00142 PI3K_C2 Phosphoinos 87.8 2.6 5.5E-05 38.4 7.9 74 7-80 13-92 (100)
277 cd08687 C2_PKN-like C2 domain 84.6 11 0.00023 33.3 9.3 83 669-779 9-92 (98)
278 PF00792 PI3K_C2: Phosphoinosi 84.5 4.5 9.8E-05 39.4 8.3 57 40-99 23-84 (142)
279 smart00142 PI3K_C2 Phosphoinos 83.4 5.9 0.00013 36.0 8.0 71 491-563 13-92 (100)
280 PTZ00447 apical membrane antig 82.6 9.1 0.0002 41.6 9.9 111 335-455 58-171 (508)
281 PF00792 PI3K_C2: Phosphoinosi 82.2 3.7 8.1E-05 40.0 6.7 62 675-747 10-85 (142)
282 PF15625 CC2D2AN-C2: CC2D2A N- 79.8 25 0.00054 35.4 11.8 104 25-136 36-164 (168)
283 cd08695 C2_Dock-B C2 domains f 77.8 48 0.001 33.9 13.0 60 37-98 53-112 (189)
284 PF14429 DOCK-C2: C2 domain in 74.0 11 0.00023 38.7 7.5 61 38-99 60-120 (184)
285 PF15625 CC2D2AN-C2: CC2D2A N- 72.0 17 0.00037 36.6 8.2 70 668-749 36-108 (168)
286 PF11618 DUF3250: Protein of u 68.7 13 0.00028 34.2 5.9 99 29-134 2-106 (107)
287 cd08694 C2_Dock-A C2 domains f 68.7 47 0.001 34.1 10.3 58 37-97 53-113 (196)
288 KOG1329 Phospholipase D1 [Lipi 67.4 7 0.00015 48.3 4.9 104 667-781 136-241 (887)
289 PF14429 DOCK-C2: C2 domain in 66.8 17 0.00038 37.1 7.2 60 362-422 59-120 (184)
290 PTZ00447 apical membrane antig 66.1 46 0.001 36.4 10.0 112 7-134 60-174 (508)
291 KOG0694 Serine/threonine prote 64.9 1.9 4.1E-05 51.5 -0.4 98 25-137 27-125 (694)
292 KOG3543 Ca2+-dependent activat 64.8 30 0.00065 40.6 8.9 120 646-782 342-461 (1218)
293 cd05137 RasGAP_CLA2_BUD2 CLA2/ 62.7 9.8 0.00021 43.8 4.8 48 736-785 1-49 (395)
294 PF08151 FerI: FerI (NUC094) d 58.7 16 0.00035 30.9 4.1 44 419-464 2-49 (72)
295 PF11618 DUF3250: Protein of u 58.2 46 0.001 30.6 7.4 93 672-780 2-105 (107)
296 PF06398 Pex24p: Integral pero 58.1 24 0.00052 40.4 7.1 44 975-1018 14-60 (359)
297 PF11696 DUF3292: Protein of u 52.4 39 0.00084 40.8 7.4 60 978-1040 103-162 (642)
298 cd08695 C2_Dock-B C2 domains f 52.0 32 0.0007 35.1 5.9 58 362-421 53-112 (189)
299 KOG2419 Phosphatidylserine dec 51.6 1.5 3.2E-05 51.1 -4.1 73 335-422 280-361 (975)
300 cd08694 C2_Dock-A C2 domains f 51.5 92 0.002 32.0 9.0 58 681-745 54-114 (196)
301 PF06219 DUF1005: Protein of u 50.3 1.4E+02 0.0029 34.2 10.6 109 668-783 35-170 (460)
302 PF06219 DUF1005: Protein of u 48.8 3.2E+02 0.0069 31.4 13.2 105 511-615 36-166 (460)
303 cd08679 C2_DOCK180_related C2 46.1 59 0.0013 33.0 6.9 58 40-98 55-114 (178)
304 KOG3543 Ca2+-dependent activat 42.8 75 0.0016 37.5 7.5 97 336-442 342-441 (1218)
305 KOG3385 V-SNARE [Intracellular 39.7 73 0.0016 29.3 5.5 17 959-975 38-54 (118)
306 KOG1792 Reticulon [Intracellul 39.2 2.4E+02 0.0051 30.0 10.1 39 982-1020 132-170 (230)
307 KOG1329 Phospholipase D1 [Lipi 37.3 28 0.00061 43.3 3.3 83 351-443 138-222 (887)
308 cd08696 C2_Dock-C C2 domains f 36.5 99 0.0022 31.4 6.6 44 37-81 54-97 (179)
309 cd08697 C2_Dock-D C2 domains f 34.0 1.3E+02 0.0027 30.8 6.9 43 37-80 56-98 (185)
310 cd05137 RasGAP_CLA2_BUD2 CLA2/ 32.6 49 0.0011 38.2 4.2 19 852-870 192-210 (395)
311 PF14851 FAM176: FAM176 family 32.1 1.9E+02 0.0041 28.5 7.4 24 867-895 7-30 (153)
312 PF04842 DUF639: Plant protein 31.3 80 0.0017 38.4 5.7 59 977-1035 493-554 (683)
313 cd08679 C2_DOCK180_related C2 30.8 1.2E+02 0.0026 30.7 6.3 47 532-578 61-115 (178)
314 PF09726 Macoilin: Transmembra 29.9 2.3E+02 0.0049 35.5 9.5 29 1004-1032 78-107 (697)
315 PF07162 B9-C2: Ciliary basal 29.0 4.4E+02 0.0096 26.4 10.0 80 338-421 5-102 (168)
316 PF14909 SPATA6: Spermatogenes 28.2 3.6E+02 0.0077 26.1 8.3 73 348-425 17-101 (140)
317 cd08696 C2_Dock-C C2 domains f 28.1 2E+02 0.0043 29.2 7.2 40 522-562 54-95 (179)
318 PF14909 SPATA6: Spermatogenes 27.9 4.2E+02 0.0092 25.7 8.8 84 491-580 4-100 (140)
319 KOG2419 Phosphatidylserine dec 27.6 16 0.00035 43.0 -0.7 56 23-81 302-357 (975)
320 PF00957 Synaptobrevin: Synapt 27.5 1.8E+02 0.0038 25.6 6.1 37 965-1001 32-68 (89)
321 KOG4027 Uncharacterized conser 27.4 6E+02 0.013 25.0 9.6 73 24-99 24-110 (187)
322 KOG0904 Phosphatidylinositol 3 27.4 1.3E+02 0.0027 37.7 6.4 107 646-758 344-471 (1076)
323 KOG0860 Synaptobrevin/VAMP-lik 27.3 1.7E+02 0.0036 27.3 5.7 36 967-1002 60-95 (116)
324 KOG0904 Phosphatidylinositol 3 27.1 1.1E+02 0.0024 38.2 5.8 71 5-78 343-421 (1076)
325 KOG0694 Serine/threonine prote 25.7 47 0.001 40.2 2.5 50 350-402 27-77 (694)
326 PF02453 Reticulon: Reticulon; 25.4 23 0.00051 35.4 0.0 29 990-1018 1-29 (169)
327 KOG4269 Rac GTPase-activating 25.3 30 0.00065 42.7 0.8 67 334-403 758-829 (1112)
328 PF07162 B9-C2: Ciliary basal 23.6 6.1E+02 0.013 25.4 9.8 81 9-98 6-102 (168)
329 KOG4269 Rac GTPase-activating 22.3 41 0.00089 41.6 1.2 67 5-81 759-830 (1112)
330 cd08697 C2_Dock-D C2 domains f 22.2 3.1E+02 0.0067 28.0 7.3 40 522-562 56-97 (185)
331 PF10409 PTEN_C2: C2 domain of 21.9 6.8E+02 0.015 23.7 13.5 90 646-748 5-98 (134)
332 KOG3142 Prenylated rab accepto 21.2 4.6E+02 0.01 26.8 8.1 45 811-863 19-71 (187)
333 PF10779 XhlA: Haemolysin XhlA 20.5 5.1E+02 0.011 21.7 7.2 33 964-996 20-52 (71)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=7.4e-40 Score=311.47 Aligned_cols=156 Identities=58% Similarity=1.110 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001521 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFA 984 (1061)
Q Consensus 905 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va 984 (1061)
+|+++++++++++|||+++|+.|+ |+|.++|.++..++||+|||+|++|+.++++++++||+++++++++|||++|++|
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~-~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~A 79 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPP-HMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVA 79 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCC-CCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccCCCCChhhHHhhcCCCCccCCC
Q 001521 985 AQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061 (1061)
Q Consensus 985 ~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~~~p~~~~~~~~r~Ps~~~~~~ 1061 (1061)
+++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|++|||++|.++||.++|||+||||++|+||
T Consensus 80 t~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 80 TQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=351.43 Aligned_cols=543 Identities=18% Similarity=0.250 Sum_probs=392.2
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKD--GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
+.|+|.|+|.+|++|...+ .++..|||+++.+.+ ...||++.++++||+|||+|++.+.... +.|.++|||.+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n 509 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFN 509 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecc
Confidence 5799999999999999888 489999999999866 5679999999999999999999999764 88999999998
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTPPPAALAPVPQPDPPAKEVKP 159 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1061)
.. ++|+.+|.+.++|..|...+...++-+.+.. .+...|+|+..+.|++...+...
T Consensus 510 ~~---~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~------------------ 565 (1227)
T COG5038 510 SF---KSDKVVGSTQLDLALLHQNPVKKNELYEFLR---NTKNVGRLTYDLRFFPVIEDKKE------------------ 565 (1227)
T ss_pred cc---CCcceeeeEEechHHhhhccccccceeeeec---cCccceEEEEeeeeecccCCccc------------------
Confidence 88 6899999999999998776655444444332 23468999999999985432111
Q ss_pred CCccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCcCCCCCchhhhchhhhhhcCCccccccCccccccc
Q 001521 160 DPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLT 239 (1061)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1061)
. ... +|
T Consensus 566 -~------------------------------------~~s-----~e-------------------------------- 571 (1227)
T COG5038 566 -L------------------------------------KGS-----VE-------------------------------- 571 (1227)
T ss_pred -c------------------------------------ccc-----cC--------------------------------
Confidence 0 000 00
Q ss_pred cccCCCCCCCCCCccccccccCCCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCccccccccCCCCCC
Q 001521 240 TSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMSTASFASDITD 319 (1061)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 319 (1061)
+. ++.
T Consensus 572 ------------------------------------~~---------------------------------ed~------ 576 (1227)
T COG5038 572 ------------------------------------PL---------------------------------EDS------ 576 (1227)
T ss_pred ------------------------------------Cc---------------------------------ccC------
Confidence 00 000
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCC----CCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeE
Q 001521 320 NIPIERSSFDLVEKMHYLFVRVVKARFLPT----KGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFL 394 (1061)
Q Consensus 320 ~~~~~~~~~dl~~~~~~L~V~v~~a~~L~~----~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L 394 (1061)
..|++-+.+.+.++|.. +..-++++.+++ ..+.|+.++.+.+|.||+.+.-.+.+.. ...+
T Consensus 577 -------------n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~-ns~~ 642 (1227)
T COG5038 577 -------------NTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRK-NSSI 642 (1227)
T ss_pred -------------CcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCc-ceeE
Confidence 03466677777777755 233348899988 5667799999999999999999999988 8899
Q ss_pred EEEEEcCCCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEE-EEeccCCCCCCCccccCCC
Q 001521 395 EVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLAT-WVGTQADDSFPDAWKTDTA 473 (1061)
Q Consensus 395 ~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~-~~~~~~d~~~~~~~~~~~~ 473 (1061)
.+.++|.. ..+.||....+|.++..+ ....-.||++.++ +|+|.++. |.+...+..
T Consensus 643 ~~~~~d~~------~g~~i~~~~~~l~~li~~----t~dt~~~f~~~~~---kg~I~~t~~W~Pi~~~~~---------- 699 (1227)
T COG5038 643 KVVTFDVQ------SGKVIATEGSTLPDLIDR----TLDTFLVFPLRNP---KGRIFITNYWKPIYNAGG---------- 699 (1227)
T ss_pred EEEecccc------cCceeccccccchHhhhc----cccceEEEEcCCC---cceEEEEeccceeecccc----------
Confidence 99998873 367899999999988875 4445689999854 48888876 443332221
Q ss_pred CCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCC
Q 001521 474 GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTD 552 (1061)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~ 552 (1061)
..+..++...++.++|.|..|.+|... ..++++|||+++.+++ .++||-... .+.||.|++..+..+..+..
T Consensus 700 ----~~s~~~~~~pIg~irv~v~~andl~n~-i~g~~~dPya~v~~n~~~k~rti~~~-~~~npiw~~i~Yv~v~sk~~- 772 (1227)
T COG5038 700 ----SSSKTVYDTPIGAIRVSVRKANDLRNE-IPGGKSDPYATVLVNNLVKYRTIYGS-STLNPIWNEILYVPVTSKNQ- 772 (1227)
T ss_pred ----ccceeeecCccceEEEEeehhhccccc-ccCcccccceEEEecceeEEEEeccc-CccccceeeeEEEEecCCcc-
Confidence 122333455677799999999999987 8899999999999975 667777666 89999999999888876654
Q ss_pred eEEEEEEeccC-CCCceeEEEEEecccccccccccc--------------c------------cceEEE------cccCC
Q 001521 553 QLSFTLENRQH-KGSVALGVTRVPLTAVERRVDDRK--------------V------------ASRWFT------FENTN 599 (1061)
Q Consensus 553 ~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~--------------~------------~~~w~~------L~~~~ 599 (1061)
.+.+.++|... +.|..+|.+.++++++..+.++.. . ..+.|+ ++...
T Consensus 773 r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~ 852 (1227)
T COG5038 773 RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVR 852 (1227)
T ss_pred EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhc
Confidence 69999999988 999999999999999876322110 0 000011 10000
Q ss_pred ---------------------------Ccc----------------------------CCccceEE--------------
Q 001521 600 ---------------------------DEK----------------------------RAYKGRVH-------------- 610 (1061)
Q Consensus 600 ---------------------------~~~----------------------------~~~~G~i~-------------- 610 (1061)
+++ ....|.+.
T Consensus 853 ~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~ 932 (1227)
T COG5038 853 YVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQY 932 (1227)
T ss_pred chhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceE
Confidence 000 00112222
Q ss_pred EEEEeeC-CcccccCcc-------------------------------------cccCCC------------chh-----
Q 001521 611 LRLCFDG-GYHVMDEAA-------------------------------------HVCSDY------------RPT----- 635 (1061)
Q Consensus 611 l~i~l~~-~~~~~~~~~-------------------------------------~~~~d~------------~~~----- 635 (1061)
+.+.++. +|+..-.+. ..+.+. .|.
T Consensus 933 l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~ 1012 (1227)
T COG5038 933 LQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFP 1012 (1227)
T ss_pred EEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecC
Confidence 2222222 111100000 000000 000
Q ss_pred --hh------------cc----CCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccc
Q 001521 636 --AR------------QL----WKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWN 696 (1061)
Q Consensus 636 --~~------------~~----~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wn 696 (1061)
++ ++ .-.+.|.|.|.+.+|.||++ .|.+|.+||||++.++++. ++|+++++|+||+||
T Consensus 1013 g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwN 1089 (1227)
T COG5038 1013 GSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWN 1089 (1227)
T ss_pred CCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcc---cccCCCCCceEEEEecceecccccchhccCCCCcc
Confidence 00 00 01557999999999999987 4999999999999999985 599999999999999
Q ss_pred cEEEEEEe-cCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 697 EQYTWKVY-DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 697 e~~~~~v~-~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
|.+..+|. +....++|.|+|||... +++.||.+.|+|+.++.+..+....+|..+. .+. ..|.++.
T Consensus 1090 Ee~~i~v~~r~~D~~~i~v~Dwd~~~-----------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~~-~~g~~~~ 1156 (1227)
T COG5038 1090 EEFTIEVLNRVKDVLTINVNDWDSGE-----------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FIV-LDGTLHP 1156 (1227)
T ss_pred ccceEeeeccccceEEEEEeecccCC-----------CccccccccccHhhcCcCCccceeeeccCcc-eEe-cccEeec
Confidence 99999998 55589999999999765 6889999999999999999888888886554 222 2378888
Q ss_pred EEEEEec
Q 001521 776 AVRFIRT 782 (1061)
Q Consensus 776 ~~~f~~~ 782 (1061)
.+.|...
T Consensus 1157 ~~~~r~~ 1163 (1227)
T COG5038 1157 GFNFRSK 1163 (1227)
T ss_pred ceecchh
Confidence 7777543
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.95 E-value=4.1e-25 Score=261.05 Aligned_cols=393 Identities=17% Similarity=0.177 Sum_probs=294.2
Q ss_pred ccEEEEEEEEeecCCC-------CCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCC
Q 001521 334 MHYLFVRVVKARFLPT-------KGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGD 405 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-------~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~ 405 (1061)
.|+|+|+|.+|++|.. ..|||+.+.+.+ ...+|++++++.||+|||+|+..+... .++|.|+|||.+.
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~-- 510 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNS-- 510 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccc--
Confidence 7899999999999975 889999999877 567999999999999999999999988 7999999999766
Q ss_pred CCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEEEEeccCCCCC-CCccccCCCCCccccccccc
Q 001521 406 VAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSF-PDAWKTDTAGNVNSKAKVYV 484 (1061)
Q Consensus 406 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~ 484 (1061)
+..|+.+|+..++|..+..+ ....++-+.+.......|++...+.+.+...... ..... ....
T Consensus 511 -~~sd~vvG~~~l~L~~L~~~----~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-----------e~~e 574 (1227)
T COG5038 511 -FKSDKVVGSTQLDLALLHQN----PVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSV-----------EPLE 574 (1227)
T ss_pred -cCCcceeeeEEechHHhhhc----cccccceeeeeccCccceEEEEeeeeecccCCcccccccc-----------CCcc
Confidence 68999999999999999885 4444445555555556699888765543332111 00000 0001
Q ss_pred CCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC
Q 001521 485 SPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH 563 (1061)
Q Consensus 485 ~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~ 563 (1061)
....+.+.+++.++++|... ......-++++++.. +++-|++.+ .+.+|.||+++...+..-....+.+.++|..
T Consensus 575 d~n~GI~k~tl~~~~~l~~~--~~~~~~~~a~l~~~~keV~st~~~k-~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~- 650 (1227)
T COG5038 575 DSNTGILKVTLREVKALDEL--SSKKDNKSAELYTNAKEVYSTGKLK-FTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ- 650 (1227)
T ss_pred cCCcceeEEEeeccccccCc--cccccceeEEEEecceEEeccceee-eccCCceeeecceEeccCcceeEEEEecccc-
Confidence 12235699999999999754 233334448888875 555557777 8999999999999888777888999998864
Q ss_pred CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCC
Q 001521 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPP 643 (1061)
Q Consensus 564 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 643 (1061)
..+.+|....+|.++... ......||++.. ..|+|.++.+|...|..-+. .++.....+
T Consensus 651 -~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~-------~kg~I~~t~~W~Pi~~~~~~----------~s~~~~~~p 709 (1227)
T COG5038 651 -SGKVIATEGSTLPDLIDR---TLDTFLVFPLRN-------PKGRIFITNYWKPIYNAGGS----------SSKTVYDTP 709 (1227)
T ss_pred -cCceeccccccchHhhhc---cccceEEEEcCC-------CcceEEEEeccceeeccccc----------cceeeecCc
Confidence 567888888888887743 245678999986 57999999887755431111 111223467
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
+|.++|.|..|.+|.. ....|++|||+.+..++.. .||-....++||.||+....++.++.+.|.+.++|....+
T Consensus 710 Ig~irv~v~~andl~n---~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sg- 785 (1227)
T COG5038 710 IGAIRVSVRKANDLRN---EIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESG- 785 (1227)
T ss_pred cceEEEEeehhhcccc---cccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhcc-
Confidence 9999999999999975 3678899999999988854 5999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccC---CcEEeeEEe---cee-cCCCCCccccEEEEEEEEEecCCc
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLET---GKVYRNTYP---LLL-LGSNGMTKMGEIEVAVRFIRTSPT 785 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~---L~~-~~~~~~~~~G~i~l~~~f~~~~~~ 785 (1061)
+|.+||.+.|+++++.. +..+..... ... ....|.+..|+|++..+|-+....
T Consensus 786 ----------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~ 845 (1227)
T COG5038 786 ----------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIV 845 (1227)
T ss_pred ----------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeeccc
Confidence 69999999999999865 111111111 111 111233345899998888655333
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-23 Score=238.45 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=176.2
Q ss_pred EEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---CeeeeeeeeecCCCCCcccceeEEeeccC--CCCeEEEEEEeccC
Q 001521 489 WYLRATVIEAQDILPPVAALKEASFTIKAQLG---FQVQKTKVSVTRNGTPSWNEDLLFVAAEP--FTDQLSFTLENRQH 563 (1061)
Q Consensus 489 ~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~d~ 563 (1061)
..|.|+|++|++|+.+ |..|.+||||++++. ..+.+|++.+ +++||.|||+|.|.+... ....|.+.|||.|.
T Consensus 167 ~~L~V~V~qa~~Lp~~-d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAK-DRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CEEEEEEEEecCCCcc-cCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 3499999999999999 877889999999996 3678899998 999999999999996543 24589999999999
Q ss_pred -CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCC
Q 001521 564 -KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKP 642 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~ 642 (1061)
+++++||.+.++|..+.... ....|.+|...........|+|.++++.. +
T Consensus 245 fsr~~~iGev~~~l~~~~~~~----~~~~w~~l~~~~~~~~~~~gel~~sL~Y~-------------------------p 295 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLS----TTLFWKDLQPSSTDSEELAGELLLSLCYL-------------------------P 295 (421)
T ss_pred cccccEEEEEEecCccccccc----cceeeeccccccCCcccccceEEEEEEee-------------------------c
Confidence 99999999999999886431 25679999875333333348999988753 2
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe--CCeE---EEecccCCCCCCccccEEEEEEec--CC-cEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY--ASKW---IRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~--~~~~---~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~v 714 (1061)
..|+|+|.|++|++|..+ |..+.+||||.+.+ +.+. .+|.++++++||+|||.|.|.|.. .. ..|.|+|
T Consensus 296 ~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred CCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 358999999999999886 88899999999883 3333 389999999999999999998873 22 6799999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEccc
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRIST 746 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~ 746 (1061)
||++.++ ..++||++.+....
T Consensus 373 ~d~d~~~-----------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLG-----------SNDLIGRCILGSDS 393 (421)
T ss_pred EEccccc-----------ccceeeEEEecCCC
Confidence 9999987 46699999888765
No 5
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.5e-23 Score=233.56 Aligned_cols=211 Identities=21% Similarity=0.273 Sum_probs=173.0
Q ss_pred cccccccEEEEEEEEeecCCC-----CCCcEEEEEECC---eeeeeccccCCCCceeeeEEEEecc--CCCCCCeEEEEE
Q 001521 329 DLVEKMHYLFVRVVKARFLPT-----KGSPVVKIAVAN---SRVESKPARRTSCFEWDQTFAFGRD--SPESSSFLEVSV 398 (1061)
Q Consensus 329 dl~~~~~~L~V~v~~a~~L~~-----~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~~L~i~V 398 (1061)
++..+...|.|+|++|+||+. .+||||++.+.. .+++|++.++|+||+|||+|.|.+. .+. ...|.+.|
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~-~~~L~l~V 239 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELS-NRVLHLSV 239 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhc-cCEEEEEE
Confidence 334457789999999999986 589999999976 5789999999999999999999953 345 89999999
Q ss_pred EcCCCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC----CccccceEEEEEEeccCCCCCCCccccCCCC
Q 001521 399 WDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG----GAYSGDLMLATWVGTQADDSFPDAWKTDTAG 474 (1061)
Q Consensus 399 ~d~d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~----~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~ 474 (1061)
||.|. |+++++||++.++|..+... .....|.+|... ....|+|.++..+-+.
T Consensus 240 ~~~dr---fsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------------- 296 (421)
T KOG1028|consen 240 YDFDR---FSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYLPT--------------- 296 (421)
T ss_pred EecCC---cccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEeecC---------------
Confidence 99999 99999999999999888773 225679998753 2223799987665322
Q ss_pred CcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC--C---eeeeeeeeecCCCCCcccceeEEeeccC
Q 001521 475 NVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG--F---QVQKTKVSVTRNGTPSWNEDLLFVAAEP 549 (1061)
Q Consensus 475 ~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~ 549 (1061)
-+.|+|.|++|+||..+ +.++.+||||++.+- . .+.||.+.+ ++.||+|||+|.|.+...
T Consensus 297 -------------~g~ltv~v~kar~L~~~-~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 -------------AGRLTVVVIKARNLKSM-DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPE 361 (421)
T ss_pred -------------CCeEEEEEEEecCCCcc-cCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHH
Confidence 23499999999999999 999999999999993 2 344555555 999999999999988644
Q ss_pred C--CCeEEEEEEeccC-CCCceeEEEEEeccc
Q 001521 550 F--TDQLSFTLENRQH-KGSVALGVTRVPLTA 578 (1061)
Q Consensus 550 ~--~~~L~i~V~D~d~-~~d~~lG~~~i~l~~ 578 (1061)
. +-.|.|+|||++. +.+++||.|.+....
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 4 3379999999999 888899999988765
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=5.4e-23 Score=230.53 Aligned_cols=274 Identities=16% Similarity=0.247 Sum_probs=213.7
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccCCCCce
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVA 568 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~~~d~~ 568 (1061)
.|+|.|.+|+||+.. +..|.+||||.|.++. .+.||.++. +++.|.|.|+|+|+++..+. .|.|-|||.|.++|+.
T Consensus 6 sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTFR-YLSFYVWDRDLKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCccee-eEEEEEeccccccccc
Confidence 389999999999999 9999999999999975 788999999 99999999999999987665 6999999999899999
Q ss_pred eEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCCceEEE
Q 001521 569 LGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVE 648 (1061)
Q Consensus 569 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~ 648 (1061)
||.+.|.-.+|.... ..+.||.|..- +.+.+.+|+|++++.+..... . ..+.
T Consensus 83 IGKvai~re~l~~~~----~~d~W~~L~~V-D~dsEVQG~v~l~l~~~e~~~---~--------------------~~~~ 134 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYP----GKDTWFSLQPV-DPDSEVQGKVHLELALTEAIQ---S--------------------SGLV 134 (800)
T ss_pred cceeeeeHHHHhhCC----CCccceecccc-CCChhhceeEEEEEEeccccC---C--------------------Ccch
Confidence 999999988887542 47889999874 456778999999998754321 0 0123
Q ss_pred EEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE----EecccCCCCCCccccEEEEEEecC----------------Cc
Q 001521 649 LGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI----RTRTVSDSLEPRWNEQYTWKVYDP----------------CT 708 (1061)
Q Consensus 649 v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~----rT~~~~~~~~P~wne~~~~~v~~~----------------~~ 708 (1061)
..++.++++.|. .+|.+||||.+...+.+. +|.++++|.+|.|||.|.|.+... -.
T Consensus 135 c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 135 CHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred hhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 345556677663 355699999999665544 999999999999999999998743 25
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCC----ccccEEEEEEEEEecCC
Q 001521 709 VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGM----TKMGEIEVAVRFIRTSP 784 (1061)
Q Consensus 709 ~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~----~~~G~i~l~~~f~~~~~ 784 (1061)
.|.+++||+..... .++|+|++++++..+........||-|..+.++.. ...|.+++.++|+.+..
T Consensus 211 ~irv~lW~~~~~~~----------~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 211 EIRVDLWNDLNLVI----------NDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eEEEeeccchhhhh----------hhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 78999999554431 48899999999999876566689999987744221 12489999999999987
Q ss_pred chhhhhhcCCCCCCCccccCCccH
Q 001521 785 TLDFLHVYSQPLLPLMHHIKPLGM 808 (1061)
Q Consensus 785 ~~~~~~~~~~p~~p~~~~~~p~~~ 808 (1061)
++.-.+.-+..++-.....+|++.
T Consensus 281 lps~~Y~pL~~LLl~s~d~~p~ta 304 (800)
T KOG2059|consen 281 LPSQYYKPLMDLLLESVDVQPITA 304 (800)
T ss_pred ccHhhhhhHHHHHHhcccccccch
Confidence 744444333334444455666664
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=1.1e-21 Score=192.83 Aligned_cols=144 Identities=55% Similarity=0.950 Sum_probs=126.3
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCCce
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGSVA 568 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d~~ 568 (1061)
+|+|+|++|+||+.+ |.+|.+||||++.++++..+|++..+++.||.|||.|.|.+.++..+.|.|.|+|++. +++++
T Consensus 1 ~L~V~Vi~A~~L~~~-d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPS-DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCC-CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence 389999999999999 9999999999999999999999887347999999999999987777799999999988 78999
Q ss_pred eEEEEEeccccccccccccccceEEEcccCCC-----ccCCccceEEEEEEeeCCcccccCcccccCCCch
Q 001521 569 LGVTRVPLTAVERRVDDRKVASRWFTFENTND-----EKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRP 634 (1061)
Q Consensus 569 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~-----~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~ 634 (1061)
||++.++|+++....+......+||+|++..+ +..+.+|+|+|++++.++|++++++.+|++|++|
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999998754333345789999998643 3456789999999999999999999999998765
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=6.2e-21 Score=180.52 Aligned_cols=124 Identities=56% Similarity=1.022 Sum_probs=106.9
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENG 726 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~ 726 (1061)
|+|+|++|+||..+..+|..|++||||++++|+++.||+++++++||+|||.|.|.+.++...|+|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~----- 76 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH----- 76 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-----
Confidence 899999999943333458999999999999999999999999999999999999999988889999999998762
Q ss_pred CCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 727 SMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 727 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
.+....+|++||++.|+|+.+..+..+..||+|.....++.++.|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0000125899999999999999999899999999887777777799986
No 9
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.3e-20 Score=177.28 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=102.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCC-CCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVR-DLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|+|++|++|+..+ .|++||||++.+++++++|+++.+ ++||+|||+|.|.+.... ..|.|+|||+|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~~- 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERAF- 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCCC-
Confidence 379999999999987777 799999999999999999999866 799999999999997643 6799999999999
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.+++...+..+...+.||+|.+.. .....|+|+|+++|
T Consensus 75 --~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~-~~~~~g~i~l~l~y 121 (121)
T cd04016 75 --TMDERIAWTHITIPESVFNGETLDDWYSLSGKQ-GEDKEGMINLVFSY 121 (121)
T ss_pred --cCCceEEEEEEECchhccCCCCccccEeCcCcc-CCCCceEEEEEEeC
Confidence 679999999999974344555568899998744 23467999999986
No 10
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=4.4e-20 Score=214.36 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=81.6
Q ss_pred CceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeee--eeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC
Q 001521 486 PKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQ--KTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH 563 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~--kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~ 563 (1061)
|....++|.|++|-+|.+. |.+|.+||||++.+|++.. +...+. +|+||+|++.|++.+..+.+..+.++|||+|.
T Consensus 610 pi~~LvrVyvv~A~~L~p~-D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPS-DGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred cceeeEEEEEEEeeecccc-CCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 3444599999999999999 9999999999999998764 455666 99999999999999999999999999999999
Q ss_pred -CCCceeEEEEEeccc
Q 001521 564 -KGSVALGVTRVPLTA 578 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~ 578 (1061)
+.|+.+|...++|..
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 889999999999876
No 11
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.85 E-value=9.3e-21 Score=215.88 Aligned_cols=238 Identities=21% Similarity=0.333 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHhhcc---CCCCccchHHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchhhH
Q 001521 813 MLRSGAVKIIAAHLARSEPPLRRETVLCMLD---ADSHAFSMRKVRANWFRI-INVLAGVIDILRWADDTRSWKNPTATI 888 (1061)
Q Consensus 813 ~lr~~~~~~~~~~l~~~epp~~~~vv~~~ld---~~~~~fs~~~~~~N~~Rl-~~~~~~~~~~~~~i~~l~~W~~P~~T~ 888 (1061)
-+|||+++|+..+- -.+||.. -+| ++...||..++++|++|| ..++..+..+.+++.++++|++|+||.
T Consensus 56 liRRFnkqi~~vk~-~~~~p~~------~lDLn~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~ 128 (642)
T PF11696_consen 56 LIRRFNKQIYHVKA-IPDPPPG------GLDLNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTA 128 (642)
T ss_pred HHHHhhceeEEeec-CCCCCcc------cccccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHH
Confidence 38999999999984 4466665 234 788999999999999999 558889999999999999999999999
Q ss_pred HHHHHHHHHHHcChhhHHHHHHHHHHHHh----hcccccCCCCCCCCCCC------------------------------
Q 001521 889 LVHALLVMLVWFPDLIVPTLAFYVFVIGV----WNYRFRKRDPLPHFDPK------------------------------ 934 (1061)
Q Consensus 889 ~~~~~~~~~~~~p~l~~p~~~~~l~~~~~----~~~~~~~~~~~~~~~~~------------------------------ 934 (1061)
+||++|++ +|+.++++|+++..++++++ +.++|+|.+++ .++..
T Consensus 129 ~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r~~lFPpap~a-lvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAv 206 (642)
T PF11696_consen 129 AFCAVYFI-AWLLDLLVPAFFAFLIALILSPPARSILFPPAPPA-LVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAV 206 (642)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccCCCCCcc-cccCCCCCccccccccccccccccCCCccccchHH
Confidence 99999998 99999999999998888887 45777776654 33211
Q ss_pred ---------------cccccccCCCcccccccCCCCCCChHHHH------------------------HHHHHHHHHHHH
Q 001521 935 ---------------ISLADTIERDELDEEFDTVPSARPNEIVR------------------------ARYDKLRTLGAR 975 (1061)
Q Consensus 935 ---------------~s~~~~~~~~~~~ee~~~~~~~~~~~~~~------------------------~~~~~l~~~~~~ 975 (1061)
++.+.+.+++...++.....+.+.+..+. -....+-..+..
T Consensus 207 EqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p 286 (642)
T PF11696_consen 207 EQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRP 286 (642)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhh
Confidence 11122222222111110001111111111 112334445668
Q ss_pred HHHHHHHHHHHHHHHHhcccCCChh--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccC-------
Q 001521 976 VQTLLGDFAAQGERVQALVTWRDPR--------ATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRD------- 1040 (1061)
Q Consensus 976 vQ~~l~~va~~~E~~~nl~~w~~P~--------~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~------- 1040 (1061)
+|++|++++|.+|||-|+|+.+.|| +..+++.+++++.++..++-.|.+.|++|+.+|+.|.+++
T Consensus 287 ~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr 366 (642)
T PF11696_consen 287 IMHMLGDITDTWERFANALSPTPPFPRHTPRLRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNR 366 (642)
T ss_pred HHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhc
Confidence 9999999999999999999999998 5567777888888888889999999999999999997554
Q ss_pred CCCChhh------HHhhcCCCCccC
Q 001521 1041 RMPSPAL------NFFRRLPSLSDR 1059 (1061)
Q Consensus 1041 ~~p~~~~------~~~~r~Ps~~~~ 1059 (1061)
.+|+.-. .+|+.||+++.+
T Consensus 367 ~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 367 KYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred cCCCHHHHHHHHHHHhccCCchHHH
Confidence 3444322 346778887654
No 12
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-20 Score=212.07 Aligned_cols=126 Identities=17% Similarity=0.304 Sum_probs=112.5
Q ss_pred CCCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 1 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
|.-..-|.|+|.+|+||++.+..|++||||.|.+++ ...||.++.++|.|.|.|+|+|.+...- +.|.|.|||.|
T Consensus 1 ~~~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d 76 (800)
T KOG2059|consen 1 VRVEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD 76 (800)
T ss_pred CccccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc
Confidence 444567999999999999999999999999999988 6899999999999999999999998763 78999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
+ ++|+.||.+.+.-++|...+ ..+.||.|.+....+.++|+|++++.+.+.
T Consensus 77 -~---~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 77 -L---KRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred -c---ccccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccc
Confidence 7 79999999999988875544 456799999998899999999999998763
No 13
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=4.2e-20 Score=177.97 Aligned_cols=127 Identities=49% Similarity=0.916 Sum_probs=110.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|++|.+.+..|.+||||++.+++++++|+++++++||.|||+|.|.+.......+..|.|+|||++.++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~--~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG--R 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc--C
Confidence 48999999999999998899999999999999999999999999999999999998653222468999999999882 1
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
+++|||++.+++.++...+....+||+|.+++..+..+|+|+|++.+.+
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 6899999999999987555667789999987766778999999998753
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=7.4e-20 Score=172.09 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=103.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
.|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 48999999999988643 4 689999999999999999999976 79999999999999876678999999999986
Q ss_pred CCCCCCCCCCCCcceEEEEEEcc-cccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRIS-TLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.|++. .+..++..+.||+|.... +..+.|.|+|.++|
T Consensus 76 ----------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ----------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 5899999999996 677888789999997643 33355999999876
No 15
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=4.6e-20 Score=175.48 Aligned_cols=115 Identities=30% Similarity=0.430 Sum_probs=100.9
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
.+|.|+|.|++|.||.. +|..++|||||++.+|+++.||+++++++||+|||.|+|.+.|++.+|+++|||+|.+.
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 47999999999999976 58889999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
.||+||++.|+|..+.... ..+| |....+.|... |.|.+
T Consensus 80 ----------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~ 118 (168)
T KOG1030|consen 80 ----------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLL 118 (168)
T ss_pred ----------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEe
Confidence 5999999999999998776 4556 65555555444 65554
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.4e-19 Score=174.10 Aligned_cols=122 Identities=25% Similarity=0.412 Sum_probs=103.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCC--CCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP--QVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~--~~~~~~L~v~v~d~d~~~~~ 84 (1061)
++|+|++|+||..++..|.+||||++.+++++++|+++++++||+|||+|.|.+.... ......|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~--- 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL--- 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc---
Confidence 5899999999999999999999999999999999999999999999999999997730 01157899999999998
Q ss_pred CCCceeEEEEEECcccee-cCceeeEEEeccccC-CCCeeeeEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVK-KGEEALIYYPLEKKS-LLSWIQGEVGLKIY 131 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~ 131 (1061)
++|++||++.+++.++.. .+.....||+|.++. ...+..|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 679999999999999763 344466899998643 33457899999874
No 17
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1e-18 Score=166.03 Aligned_cols=118 Identities=56% Similarity=1.008 Sum_probs=105.7
Q ss_pred EEEEEEEEeecCCC-CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCeeE
Q 001521 336 YLFVRVVKARFLPT-KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLG 414 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~lG 414 (1061)
+|.|+|++|+||+. .+||||++.+++...+|++++++.||+|||+|.|.+.++. ...|.|.|||+|. + ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~-~~~L~~~v~d~d~---~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ-GSTLEVSVWDKDK---A-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc-CCEEEEEEEeCCC---C-cCceee
Confidence 58999999999987 8999999999999999999999999999999999998876 8899999999987 3 899999
Q ss_pred EEEEECcccCCCCCCCCCCCCeeEEccCCC--ccccceEEEEEEec
Q 001521 415 GICFDVTEIPLRDPPDSPLAPQWYRMEGGG--AYSGDLMLATWVGT 458 (1061)
Q Consensus 415 ~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~--~~~G~i~l~~~~~~ 458 (1061)
.+.++|.++..+.+.+....++||+|++.. ..+|+|++++|+|+
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999999876554556678999998764 57899999999874
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.4e-18 Score=170.86 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=111.7
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecCC-cEEEEEEEeCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDPC-TVLALGVFDSWGIFEG 723 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~~~ 723 (1061)
.|+|+|++|++|+++ |..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++. ..|.|.|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 388999999999885 88899999999999999999999977 699999999999998765 68999999998765
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCC----cEEeeEEeceecCC-----CCCccccEEEEEEEEEecCCchhhhhhcCC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETG----KVYRNTYPLLLLGS-----NGMTKMGEIEVAVRFIRTSPTLDFLHVYSQ 794 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~~~~~~G~i~l~~~f~~~~~~~~~~~~~~~ 794 (1061)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|++.|...+.+......|.+
T Consensus 76 ---------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~ 146 (150)
T cd04019 76 ---------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSS 146 (150)
T ss_pred ---------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeeccccccc
Confidence 588999999999998643 34579999986532 223345999999999977666444444544
Q ss_pred CC
Q 001521 795 PL 796 (1061)
Q Consensus 795 p~ 796 (1061)
.+
T Consensus 147 ~~ 148 (150)
T cd04019 147 DL 148 (150)
T ss_pred CC
Confidence 44
No 19
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=1e-18 Score=168.11 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=101.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec------CCcEEEEEEEeCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD------PCTVLALGVFDSWGI 720 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~------~~~~l~i~v~d~~~~ 720 (1061)
++|+|++|+||+++ |..|.+||||++++++...||+++++++||+|||.|.|.+.+ ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999874 788999999999999999999999999999999999999986 358899999999987
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEccccc--CCcEEeeEEeceecCCCCCccccEEEEEE
Q 001521 721 FEGENGSMETTRPDCRIGKVRIRISTLE--TGKVYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 5889999999999987 56666899999865433333459999886
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.7e-18 Score=163.84 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=98.9
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARN---LLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|++|++ |..+|..|++||||++.++++++||+++++++||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 889999999999999999999999999999999999999999998754 58999999998861
Q ss_pred ---CCCCCceeEEEEEECccceecCceeeEEEeccccC-CCCeeeeEEEE
Q 001521 83 ---PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS-LLSWIQGEVGL 128 (1061)
Q Consensus 83 ---~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l 128 (1061)
..++|++||++.+++..+.. +.....||+|.... ...+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLED-DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccC-CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00269999999999999654 44567899998643 23446788875
No 21
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=8.2e-19 Score=167.00 Aligned_cols=116 Identities=28% Similarity=0.509 Sum_probs=98.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
.|.|+|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||.|.|.+.++. ..|.+.|||+|++
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTF-- 78 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCC--
Confidence 5899999999999999998899999999999999999999999999999999999999985 7899999999999
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
++|||||.++|+|..++..... |+ |....+.+...|++.++.
T Consensus 79 -s~dD~mG~A~I~l~p~~~~~~~---~~-l~~~~~~gt~~~~v~~s~ 120 (168)
T KOG1030|consen 79 -SSDDFMGEATIPLKPLLEAQKM---DY-LKLELLTGTAIGKVLLSR 120 (168)
T ss_pred -CcccccceeeeccHHHHHHhhh---hc-cccccCCCcEeeEEEecc
Confidence 7899999999999997665432 34 433333344456555544
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=4.3e-18 Score=164.90 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=103.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
+.|.|+|+|++|++|.+.+..|.+||||++.++++.++|+++++++||.|||+|.|.+.+.. ...|.|+|||++.+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~~- 88 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDFF- 88 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCCC-
Confidence 56999999999999999999999999999999999999999999999999999999998755 47899999999988
Q ss_pred CCCCCceeEEEEEECccceecC----ceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKG----EEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.+++.++.... ....+|++|..+ .+|+|++++++
T Consensus 89 --~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-----~~g~i~l~~~~ 135 (136)
T cd08375 89 --SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEV-----PTGEVVVKLDL 135 (136)
T ss_pred --CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccc-----cceeEEEEEEe
Confidence 67999999999999987621 122356766543 48999999986
No 23
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=5.7e-18 Score=161.71 Aligned_cols=120 Identities=24% Similarity=0.394 Sum_probs=104.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~--- 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRG--- 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCC---
Confidence 4899999999999999999999999999987 688999999999999999999998754 37899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
++|++||++.+++.++.. +.....|++|.+++. ....|+|++.+++.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 LTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred CCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 679999999999999754 444668999987543 356899999999864
No 24
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=6e-18 Score=161.56 Aligned_cols=119 Identities=26% Similarity=0.355 Sum_probs=105.0
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
.|+|+|++|++|++. |..|.+||||++++++ ...+|+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999875 7789999999999988 456999999999999999999999887899999999999876
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|++||++.++++++..+...+.|++|..... .+..|+|+|.++|+
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 --------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLT 120 (121)
T ss_pred --------CCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEEC
Confidence 58899999999999998888889999975432 34569999999986
No 25
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=3.1e-18 Score=162.95 Aligned_cols=117 Identities=29% Similarity=0.493 Sum_probs=102.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccC-CCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAV-RDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|+|+|++|+||+..+..|++||||++.+++.+++|+++. +++||.|||+|.|.+.... .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 68999999999999999999999999999999999999885 5799999999999998754 47899999999987
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+ |++||++.+++.++...+ ...+|++|...+ ...|+|+++++|
T Consensus 76 -~-~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 -K-PDLIGDTEVDLSPALKEG-EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred -C-CcceEEEEEecHHHhhcC-CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 4 899999999999975543 356899998643 578999999986
No 26
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=5.2e-18 Score=161.14 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=101.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKD-GHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|.+|+||++++ ..|.+||||.+.++++ .++|+++++|+||.|||+|.|.+.... ..|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~--- 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVL--- 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCC---
Confidence 789999999999874 4678999999999774 689999999999999999999998643 6899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.++++++... ...+.||+|.+....++..|+|++++.+
T Consensus 75 ~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKY-YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccCC-CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 6899999999999997653 3456899999876666679999998764
No 27
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=5.8e-18 Score=163.73 Aligned_cols=122 Identities=26% Similarity=0.464 Sum_probs=106.2
Q ss_pred cEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
|+|+|+|++|+||...+. .+.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~- 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRF- 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCC-
Confidence 789999999999999988 899999999999999999999999999999999999998744 57899999999988
Q ss_pred CCCCCceeEEEEEECccceec--CceeeEEEeccccC--CCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLEKKS--LLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~ 132 (1061)
+++++||++.+++.++... ......||+|.++. ......|+|+|+++|
T Consensus 77 --~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 --AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred --CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5799999999999997642 23356899998753 234579999999986
No 28
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=9.3e-18 Score=159.10 Aligned_cols=115 Identities=22% Similarity=0.466 Sum_probs=102.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
+|+|+|++|++|+..+..|.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++.. +
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~---~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTG---K 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCC---C
Confidence 58999999999999998899999999999999999999999999999999999998764 47899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+|++||++.+++.++.. +.....|++|.+. .|+|++.+.|.
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPR-EQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCC-CCceEEEEEccCC------CcEEEEEEEec
Confidence 79999999999999654 4456789999864 69999998874
No 29
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.76 E-value=8.5e-18 Score=167.18 Aligned_cols=125 Identities=25% Similarity=0.348 Sum_probs=107.8
Q ss_pred ceEEEEEEEeecCCCCCccc---------------------------CCCCCCCcEEEEEeCCeEE-EecccCCCCCCcc
Q 001521 644 VGTVELGVIGCKNLLPMKTV---------------------------NGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRW 695 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~---------------------------d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~w 695 (1061)
-|.|.|+|++|++|+.|+.. ...|.+||||++.+++..+ ||++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 48999999999999998421 2567899999999998765 9999999999999
Q ss_pred ccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 696 NEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 696 ne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
||.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+...+.||+|.....+..+..|.|++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~------------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v 153 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG------------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRV 153 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC------------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEE
Confidence 99999999888889999999998765 679999999999999888888999998764444455589999
Q ss_pred EEEEE
Q 001521 776 AVRFI 780 (1061)
Q Consensus 776 ~~~f~ 780 (1061)
+++|+
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99984
No 30
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=9.6e-18 Score=163.24 Aligned_cols=121 Identities=30% Similarity=0.505 Sum_probs=104.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-------RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.|+|+|++|+||..++..|.+||||++.+++. .++|+++++++||.|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence 48999999999999998899999999999654 579999999999999999999987643 6799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCc-----eeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGE-----EALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+.+ +++++||++.+++.++..... ....||+|.++...+...|+|++++.|.
T Consensus 77 ~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRL---TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCC---CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 998 679999999999999765432 2458999998666677899999999873
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=8.9e-18 Score=159.57 Aligned_cols=115 Identities=25% Similarity=0.448 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC----
Confidence 389999999999877 7999999999999999999999999999999999987654 57899999999986
Q ss_pred CCceeEEEEEECccceecC----ceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKG----EEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++++||++.+++.++...+ .....||+|..... ++.+|+|+|.+.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 5899999999999975532 22458999988654 6789999999987
No 32
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.3e-17 Score=158.42 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=102.4
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|.|+|++|+||++++ +.+|.+||||.+.++++. .+|+++++|+||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 689999999998852 246789999999998764 5999999999999999999999876789999999999875
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.++++++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 58999999999999987777789999987654443 35999999875
No 33
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.4e-17 Score=158.65 Aligned_cols=118 Identities=21% Similarity=0.393 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|.+++..|++||||++.+++. .++|+++++++||.|||.|.|.+... ...|.|+|||++.. +
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~---~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTL---S 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCC---C
Confidence 7899999999999999999999999999875 57999999999999999999998754 37899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIY 131 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 131 (1061)
+|++||++.++++++...+...+.|++|.+........|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 8999999999998875443445689999876555667899999875
No 34
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.1e-17 Score=161.05 Aligned_cols=121 Identities=28% Similarity=0.459 Sum_probs=103.7
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCC----cEEEEEEEeCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPC----TVLALGVFDSWGIF 721 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~----~~l~i~v~d~~~~~ 721 (1061)
+|+|+|++|++|.+. |..|.+||||++.++++..||+++++++||.|||.|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 489999999999874 77889999999999999999999999999999999999998543 57999999988764
Q ss_pred CCCCCCCCCCCCCcceEEEEEEccccc-CCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLE-TGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+ +|++||++.++++++. .+.....||+|......+. ..|+|+|++.||
T Consensus 78 ~----------~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~ 126 (127)
T cd04022 78 R----------RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSR-VRGEIGLKVYIT 126 (127)
T ss_pred C----------CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCC-ccEEEEEEEEEc
Confidence 1 4889999999999997 4666689999987644333 359999999886
No 35
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2.4e-17 Score=157.10 Aligned_cols=118 Identities=27% Similarity=0.517 Sum_probs=104.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|.|+|++|+||+..+..+.+||||++.+++..++|+++++++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~--- 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKD--- 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCC---
Confidence 68999999999999999899999999999999889999999999999999999998753 37899999999987
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+++++||++.+++.++.. + ...|++|.+........|+|.+++.+
T Consensus 74 ~~~~~iG~~~~~l~~~~~-~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKN-G--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCceeeEEEEEHHHCCC-C--CceEEECcccCCCCceeeEEEEEEEe
Confidence 579999999999999643 2 24699998876666789999999986
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=2.5e-17 Score=158.33 Aligned_cols=120 Identities=19% Similarity=0.419 Sum_probs=102.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|++|+||+. ..|.+||||++.+++ ++++|+++++++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~--- 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKK--- 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCC---
Confidence 6799999999987 678999999999974 678999999999999999999999653 37899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCC-CCeeeeEEEEEEEEEeCC
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL-LSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~~ 136 (1061)
++|+|||++.+++.++.... ....||+|.++.. .....|+|++++.|.+..
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNP-SGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCC-ceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 67999999999999976543 3467999987543 345799999999998754
No 37
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.2e-17 Score=156.59 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=90.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----C--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----G--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.|+|+|++|+||+..+ .|.+||||+|++- . ++++|+++.+++||+|||+|.|.+..........|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 5999999999983 2 467899999999999999999999864322246799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|.. ++|++||++.+++.++...+ ....|++|.+..
T Consensus 80 d~~---~~dd~IG~~~l~l~~~~~~~-~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFA---RDDRLVGVTVLQLRDIAQAG-SCACWLPLGRRI 114 (120)
T ss_pred ccc---CCCCEEEEEEEEHHHCcCCC-cEEEEEECcCcc
Confidence 977 67999999999999976554 467899998753
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=3.9e-17 Score=156.57 Aligned_cols=121 Identities=20% Similarity=0.358 Sum_probs=102.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWGIF 721 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~ 721 (1061)
...|+|+|++|+||++ .+.+||||.+.+++.. .||++ ++++||.|||.|.|++..+. ..|+|.|||++..+
T Consensus 3 ~~~L~V~Vi~A~~L~~------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPV------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCC------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC
Confidence 4579999999999975 2478999999998865 58887 56899999999999976554 67999999998875
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
+|++||++.|+|+.+..+...+.||+|......+.+..|+|+|.++|.++
T Consensus 76 -----------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 -----------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -----------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 69999999999999999888899999987654344456999999999753
No 39
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.9e-17 Score=154.09 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=90.0
Q ss_pred ccEEEEEEEEeecCCC--CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCC
Q 001521 334 MHYLFVRVVKARFLPT--KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPG 411 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~--~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~ 411 (1061)
|+.|+|+|++|++|++ ..||||+|++|+++.+|++.++ .||.|||.|.|.+.+. ...|.|+|||+|. ..|+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~----~~DD 73 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL----IWDT 73 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC----cCCC
Confidence 6789999999999987 6799999999999999999987 5999999999999887 4559999999986 5999
Q ss_pred eeEEEEEECcccCCCCCCCCCCCCeeEEccCC
Q 001521 412 FLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG 443 (1061)
Q Consensus 412 ~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 443 (1061)
+||++.|+|.++..+ +..+.++||+|+..
T Consensus 74 ~lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 74 LVGTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred ceEEEEEEhHHcccC---CCCCCCccEecChH
Confidence 999999999999986 56778999999854
No 40
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=5.1e-17 Score=157.40 Aligned_cols=119 Identities=26% Similarity=0.429 Sum_probs=101.1
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWG 719 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 719 (1061)
...+|.|+|+|++|++|.++ |..|.+||||++.+++...||+++++++||.|||.|.|.+.++. ..|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 35689999999999999875 78899999999999999999999999999999999999998754 789999999998
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccC-----CcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLET-----GKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
.+ +|++||++.+++.++.. ...+..|.++ .+. ..|+|+|++.|
T Consensus 88 ~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-----~~~-~~g~i~l~~~~ 135 (136)
T cd08375 88 FS-----------PDDFLGRTEIRVADILKETKESKGPITKRLLL-----HEV-PTGEVVVKLDL 135 (136)
T ss_pred CC-----------CCCeeEEEEEEHHHhccccccCCCcEEEEecc-----ccc-cceeEEEEEEe
Confidence 75 58899999999999976 2233445554 233 33999999987
No 41
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=4.3e-17 Score=155.38 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=103.9
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|+|+|++|+||+.+ |..+.+||||++++++...+|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999875 7788999999999999989999999999999999999999887889999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.+++.++..+. ..||+|......+.. .|+|.|++.|
T Consensus 75 --------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~G~i~l~~~~ 118 (119)
T cd08377 75 --------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRA-KGSILLEMDV 118 (119)
T ss_pred --------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCce-eeEEEEEEEe
Confidence 5889999999999998776 689999765433333 4999999876
No 42
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=2.9e-17 Score=157.19 Aligned_cols=115 Identities=32% Similarity=0.577 Sum_probs=101.0
Q ss_pred cEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDG------HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
|+|+|+|++|+||+..+. .|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 689999999999998875 368999999999999999999999999999999999998654 57899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+.. ++++||++.+++.++...+ ....||+|.+. ..|+|+++++|
T Consensus 78 ~~~----~~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD----KDDFLGRLSIDLGSVEKKG-FIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC----CCCcEEEEEEEHHHhcccC-ccceEEECcCC-----CCceEEEEEeC
Confidence 987 5899999999999976544 35689999865 38999999875
No 43
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.73 E-value=6.6e-17 Score=155.03 Aligned_cols=120 Identities=22% Similarity=0.391 Sum_probs=99.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
..|+|+|++|+||+.+ +.+||||++.+++ +..+|++. +++||.|||+|.|.+.... ...|.|.|||++..
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~-- 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKR-- 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCC--
Confidence 5799999999999874 4799999999987 45788874 6899999999999876543 25799999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCC-CCeeeeEEEEEEEEEeC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL-LSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~ 135 (1061)
++|++||++.+++.++.. +.....||+|.+... .....|+|+|+++|.+.
T Consensus 75 -~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 -SKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -CCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 689999999999999654 444678999987643 34567999999999864
No 44
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=2.5e-17 Score=156.65 Aligned_cols=116 Identities=23% Similarity=0.358 Sum_probs=99.8
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEec-CCcEEEEEEEeCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~ 722 (1061)
|.|+|+|++|++|++. |..|.+||||++.+++...+|+++++ ++||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999874 77899999999999998889999865 7999999999999986 4578999999987653
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
|++||++.++++++..+.....||+|... + +..|+|+|++.|
T Consensus 77 -----------~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 77 -----------PDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -----------CcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 78999999999998766666899999742 3 345999999876
No 45
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=5.3e-17 Score=156.06 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=103.1
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|+|++|+||+. ..|.+||||++.+++ +..||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5799999999964 568999999999974 567999999999999999999999766788999999999875
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..++
T Consensus 73 --------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 73 --------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred --------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 589999999999999887766889999865332334459999999998654
No 46
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.73 E-value=7.3e-17 Score=154.93 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=104.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
..+|+|+|++|++|...+..|.+||||++.++++.++|+++++++||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999999899999999999999999999999999999999999988764 47899999999987
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEecccc--CCCCeeeeEEEEEEEEEeC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK--SLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~l~l~~~~~~~ 135 (1061)
+|++||++.+++.++. ....+|++|..+ ...+...|+|.+++++.+.
T Consensus 76 --~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 --CDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred --CCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 4899999999998742 233468888643 3566789999999988764
No 47
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=4.1e-17 Score=155.31 Aligned_cols=115 Identities=23% Similarity=0.426 Sum_probs=99.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|+..+..|++||||++.+++ .+++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~- 76 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV- 76 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC-
Confidence 3789999999999998889999999999953 6789999999999999999999998754 46799999999987
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+|++||++.+++.++. .+.....|++|.+.+ .|+|++++.+.
T Consensus 77 ---~~~~iG~~~~~l~~l~-~g~~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 77 ---MDDHLGTVLFDVSKLK-LGEKVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred ---CCcccEEEEEEHHHCC-CCCcEEEEEECCCCC-----CceEEEEEEee
Confidence 4899999999999964 455567899998764 89999888763
No 48
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.72 E-value=2.5e-17 Score=156.77 Aligned_cols=105 Identities=26% Similarity=0.415 Sum_probs=89.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.+.|.|+|++|+||++++ .|.+||||++.+. ..+++|+++++++||.|||+|.|.+..........|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 478999999999999999 8999999999995 3578999999999999999999997332212257899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
+.+ +++++||++.++|.++.. ......||+|
T Consensus 91 d~~---~~~~~lG~~~i~l~~l~~-~~~~~~W~~L 121 (122)
T cd08381 91 DSL---VENEFLGGVCIPLKKLDL-SQETEKWYPL 121 (122)
T ss_pred CCC---cCCcEEEEEEEecccccc-CCCccceEEC
Confidence 998 689999999999999654 3345679987
No 49
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=7e-17 Score=154.73 Aligned_cols=118 Identities=27% Similarity=0.476 Sum_probs=101.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
+|+|+|++|++|..++..+.+||||++.+++..++|+++++++||.|||+|.|.+.... ...|.|+|||++.+ +
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~---~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLV---S 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCC---C
Confidence 48999999999999998889999999999999999999999999999999999998764 47899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccC----CCCeeeeEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS----LLSWIQGEVGLKI 130 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~----~~~~~~G~l~l~~ 130 (1061)
++++||++.+++.++...+ ....||.|.+.. ......|.|++.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAK-QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCcEeEEEEEEHHHcccCC-CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 7999999999999975533 345799998733 2345679998876
No 50
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.72 E-value=9.7e-17 Score=152.13 Aligned_cols=113 Identities=24% Similarity=0.379 Sum_probs=101.8
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~ 725 (1061)
|+|+|++|+||++. |..|.+||||.+++++...+|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999875 7788999999999999999999999999999999999999876 689999999999875
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|++||++.++|+++..+.....||+|... .|+|++++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 589999999999999988888999999632 39999998875
No 51
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=1.8e-16 Score=152.16 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=102.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
.+.|+|+|++|++|... |..|.+||||++.++++..||++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-- 76 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-- 76 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC--
Confidence 46899999999999874 7889999999999999999999999999999999999999888899999999988753
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC--CCCCccccEEEEEEEEEe
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG--SNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~G~i~l~~~f~~ 781 (1061)
|++||++.++++.+..+. .++|+|.... ..+ +..|+|.|++.+..
T Consensus 77 ----------d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~ 123 (126)
T cd04046 77 ----------DEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSSD 123 (126)
T ss_pred ----------CCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEcc
Confidence 789999999999875544 6788986432 233 33499999988753
No 52
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=8.5e-17 Score=153.75 Aligned_cols=119 Identities=24% Similarity=0.449 Sum_probs=101.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
.|+|+|++|++|..++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++.++.
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~- 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKK- 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCC-
Confidence 389999999999999989999999999996 578999999999999999999999965 3789999999998831
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCC--CCeeeeEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL--LSWIQGEVGLKI 130 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 130 (1061)
..|+|||++.+++.++.........|++|.+.+. .+...|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1258999999999998766555567999977553 566789999876
No 53
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=9.5e-17 Score=155.21 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=102.8
Q ss_pred eEEEEEEEeecCCCCCcccCC--CCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNG--KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIF 721 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~--~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 721 (1061)
|.|+|+|++|++|++. |. .|.+||||++++++...+|+++++++||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 7899999999999874 66 7899999999999999999999999999999999999997 5689999999999875
Q ss_pred CCCCCCCCCCCCCcceEEEEEEccccc---CCcEEeeEEeceecCC-CCCccccEEEEEEEE
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLE---TGKVYRNTYPLLLLGS-NGMTKMGEIEVAVRF 779 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~-~~~~~~G~i~l~~~f 779 (1061)
+|++||++.|++.++. .......||+|..... ......|+|+|++.|
T Consensus 78 -----------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -----------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -----------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5889999999999986 2334578999986632 222345999998764
No 54
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.1e-16 Score=153.83 Aligned_cols=118 Identities=30% Similarity=0.542 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC--
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP-- 83 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~-- 83 (1061)
.|+|+|++|++|+..|..|.+||||++.+++..++|+++.+++||.|||+|.|.+.... ..|.|+|||+|....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 68999999999999999999999999999988999999999999999999999986543 679999999985310
Q ss_pred ------CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEE
Q 001521 84 ------TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 84 ------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
.+++++||++.+++.++. ....+||.|.++...+..+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 025899999999999863 22458999999887788999999875
No 55
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=4.6e-17 Score=158.98 Aligned_cols=107 Identities=21% Similarity=0.381 Sum_probs=89.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecC------------CCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGK------------PPQVFT 68 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~------------~~~~~~ 68 (1061)
.|.|+|++|+||.. ..|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+.. ......
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999987 568999999999965 67899999999999999999999951 111113
Q ss_pred CeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 69 DMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 69 ~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
..|.|.|||++.+ ++|+|||++.|++..+.........||+|.++.
T Consensus 79 ~~L~i~V~d~~~~---~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMG---GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCC---CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 6799999999998 679999999999999765423456799998865
No 56
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.71 E-value=1.1e-16 Score=152.23 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=88.3
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEe---c-CCcEEEEEEE
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVY---D-PCTVLALGVF 715 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~---~-~~~~l~i~v~ 715 (1061)
|.|.|.|++|+||+++ | .|.+||||++++.+ .+.||+++++++||.|||.|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 6899999999999985 7 78999999999763 3569999999999999999999983 2 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
|++..+ ++++||++.|+|+++..+.....||+|
T Consensus 89 d~d~~~-----------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999875 588999999999999988777899998
No 57
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.71 E-value=1.5e-16 Score=158.34 Aligned_cols=121 Identities=21% Similarity=0.347 Sum_probs=101.2
Q ss_pred CcEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCe-EEEeeccCCCCCCee
Q 001521 4 IQKLIVEVVDARNLLPKD------------------------------GHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTW 52 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W 52 (1061)
.|+|.|+|.+|++|+.+| ..|++||||+|.+++. ..+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999987 3577999999999884 469999999999999
Q ss_pred eceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCC-CeeeeEEEEEEE
Q 001521 53 NEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL-SWIQGEVGLKIY 131 (1061)
Q Consensus 53 ~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~ 131 (1061)
||+|.|.+... .+.|.|.|||+|.+ .+++||++.++++++.. +...+.|++|.+.... ....|+|+++++
T Consensus 86 nE~F~~~~~~~----~~~l~~~V~d~d~~----~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 86 NESFHIYCAHY----ASHVEFTVKDNDVV----GAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred ceEEEEEccCC----CCEEEEEEEeCCCc----CCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 99999998754 36899999999987 36899999999999764 5556789999874322 234689999998
Q ss_pred EE
Q 001521 132 YV 133 (1061)
Q Consensus 132 ~~ 133 (1061)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 58
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.70 E-value=5.3e-17 Score=149.76 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=85.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+...+. .+..|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l-~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEES-LDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHh-CCcEEEEEEEeC
Confidence 5689999999999998 3 46799999999942 57899999999999999999999887543 367899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++ +++++||++.+++.++ ..+.....|-.|
T Consensus 88 Drf---s~~d~IG~v~l~l~~~-~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRF---SRHSTLGELRLKLADV-SMMLGAAQWVDL 118 (118)
T ss_pred CCC---CCCceEEEEEEccccc-cCCccccchhcC
Confidence 999 7899999999999985 222233357543
No 59
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=1.7e-16 Score=154.33 Aligned_cols=125 Identities=22% Similarity=0.389 Sum_probs=101.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCC----C--CCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ----V--FTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~----~--~~~~L~v~v~d~ 78 (1061)
..|+|+|++|++|..+|..|.+||||++.+++++++|+++++++||.|||+|.|.+..... . ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999997543210 0 025799999999
Q ss_pred CCCCCCCCCceeEEEEE-ECcccee--cCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 79 KAYGPTTRNNFLGRIRL-SSSQFVK--KGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|.. ++|++||++.+ ++..+.. ......+|++|.+.+ ...|+|++++++.+.
T Consensus 81 d~~---~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSV---GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred cCC---CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 998 67999999997 4433322 123456899998543 469999999999874
No 60
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=2.2e-16 Score=150.38 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=99.9
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|.|+|++|++|.++ |..|.+||||+++++++. .||+++++++||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999885 888999999999998875 4999999999999999999999877789999999999876
Q ss_pred CCCCCCCCCcceEEEEEEcccccCC-cEEeeEEeceecCCCCCccccEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETG-KVYRNTYPLLLLGSNGMTKMGEIEVAVR 778 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 778 (1061)
+|++||++.+++.++..+ ...+.|++|......+. ..|+|.+.++
T Consensus 75 -------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 -------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred -------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 589999999999988754 23578999986544333 3499988764
No 61
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=1.6e-16 Score=152.22 Aligned_cols=119 Identities=25% Similarity=0.381 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~ 724 (1061)
+|+|+|++|++|.++ |..|.+||||.+++++...+|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999875 7788999999999999999999999999999999999999865 478999999998876
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCC---CCccccEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSN---GMTKMGEIEVAVR 778 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~i~l~~~ 778 (1061)
++++||++.++|+++..+.....||.|...... ..+..|.|++.++
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 --------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred --------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 588999999999999876666889999865332 1223499988764
No 62
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.9e-16 Score=154.07 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-------EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-------WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSW 718 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-------~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~ 718 (1061)
.|+|+|++|++|+.. |..|.+||||++.+++. ..+|+++++++||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999874 77889999999997654 46999999999999999999999876788999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCc------EEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGK------VYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
..+ +|++||++.++++++..+. ....||+|......+.. .|+|+|++.|
T Consensus 78 ~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~G~l~~~~~~ 132 (133)
T cd04033 78 RLT-----------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRV-KGHLRLYMAY 132 (133)
T ss_pred CCC-----------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcc-eeEEEEEEee
Confidence 876 5889999999999987653 23589999865444433 4999999987
No 63
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=1.8e-16 Score=147.13 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|+||+..+..+.+||||+++++++.++|+++++++||+|||+|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC-----
Confidence 38999999999999998999999999999999999999999999999999999999865 4789999999874
Q ss_pred CCceeEEEEEECccceecC-ceeeEEEeccccC
Q 001521 86 RNNFLGRIRLSSSQFVKKG-EEALIYYPLEKKS 117 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~ 117 (1061)
+++||++.++|.++...+ ...+.||+|.+++
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred -CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 579999999999987654 4467899998753
No 64
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.69 E-value=1.9e-16 Score=151.69 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=88.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v 714 (1061)
.+.|.|+|++|+||+++ |.. |.+||||.+++.+ ...||+++++++||.|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 46899999999999985 765 8999999999642 23599999999999999999999873 236899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 91 ~d~~~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG-----------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC-----------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9998875 6889999999999998877778999983
No 65
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=3.4e-16 Score=149.66 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=89.2
Q ss_pred ceEEEEEEEeecCCCCCcccCC-CCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNG-KSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~-~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v 714 (1061)
.|.|.|.|++|+||++. |. .|.+||||++++.+ ...||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 14 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 14 TQSLNVHVKECRNLAYG---DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCeEEEEEEEecCCCcc---CCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 57999999999999874 44 57899999999642 24599999999999999999999874 346899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ ++++||++.|+|.++......+.||||.
T Consensus 91 ~d~~~~~-----------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG-----------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC-----------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999876 5889999999999999888889999983
No 66
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=4.2e-16 Score=151.15 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=89.4
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEecCCcEEEEEEE-eCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVF-DSW 718 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~-d~~ 718 (1061)
|.|.|+|++|+||.+. .+..|.+||||++++.+ + +.||+++++++||+|||.|.|++......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~--~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQK--PGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcc--cCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 6899999999999874 13578899999999633 2 56999999999999999999999966689999999 566
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
... ++++||++.|+|+++..+.....||+|...
T Consensus 107 ~~~-----------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD-----------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC-----------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 543 588999999999999877777899999754
No 67
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.4e-16 Score=151.53 Aligned_cols=121 Identities=22% Similarity=0.333 Sum_probs=100.9
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 4 IQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYYG--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
.|.|+|+|++|+||+..+ ..+.+||||++.+++ ..++|+++.+++||.|||.|.|.+... .+.|.|+|||++.
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~ 76 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFND 76 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCC
Confidence 478999999999998655 356799999999987 789999999999999999999998832 4789999999998
Q ss_pred CCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
. ++|++||++.+++.++...+.....|..|.. .++..|+|+++++|.+
T Consensus 77 ~---~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 K---RKDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred C---CCCceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 8 6799999999999998765543333555543 3345899999999975
No 68
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=1.8e-16 Score=146.95 Aligned_cols=95 Identities=19% Similarity=0.329 Sum_probs=83.9
Q ss_pred cEEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 5 QKLIVEVVDARNLLPKDG----HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~----~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
|+|.|+|++|++|++.+. .+.+||||++.++++.+||+++++++||+|||+|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 789999999999998764 2458999999999999999999999999999999999876542 4689999999999
Q ss_pred CCCCCCCceeEEEEEECccceecC
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKG 104 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~ 104 (1061)
+ ++|++||++.++|.+|....
T Consensus 79 ~---~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 F---SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred C---CCCcceEEEEEEHHHHHhhC
Confidence 8 68999999999999976543
No 69
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=5.1e-16 Score=150.63 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=100.8
Q ss_pred CcEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEECCeE-EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPKDG----------HGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
.|.|+|+|++|++|...+. .|.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 5789999999999998885 2689999999998854 799999999999999999999973 47899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceec-CceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK-GEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
|.|||++.+ +++++||++.++|.++... +.....|++|.+ .|+|++++.|..
T Consensus 78 ~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAI---GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCC---CCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999988 5789999999999997764 455678999973 799999999875
No 70
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.68 E-value=5.3e-16 Score=149.43 Aligned_cols=119 Identities=23% Similarity=0.414 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------------CeEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeE
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-------------GQRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMF 71 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------------~~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L 71 (1061)
+..|++++|+||+ ++..|++||||++.+. +++++|+++++++||.| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 5689999999997 7778999999999994 24789999999999999 9999999853 3679
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCc--eeeEEEeccccCCCCeeeeEEEEEE
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGE--EALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
.|+|||++..+....+++||++.+++.++...+. ....|++|.+++..+.++|+|.+.+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999998754100127999999999999876643 3668999999999999999999986
No 71
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=2.7e-16 Score=152.49 Aligned_cols=106 Identities=24% Similarity=0.407 Sum_probs=90.0
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe-
Q 001521 4 IQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF- 76 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~- 76 (1061)
.+.|.|+|++|+||.+++ ..|.+||||++.+. + .++||+++++++||+|||+|.|.+. .. +..|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~---~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PT---GKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CC---CCEEEEEEEe
Confidence 578999999999998874 57899999999993 2 3789999999999999999999998 33 589999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|++.+ ++++|||++.|+|.++ ..+.....||+|.+..
T Consensus 104 d~~~~---~~~~~iG~~~i~L~~l-~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRM---DKKVFMGVAQILLDDL-DLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCC---CCCceEEEEEEEcccc-cCCCCceeEEecCCcc
Confidence 57777 6899999999999996 3344456899998753
No 72
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=1.9e-16 Score=151.57 Aligned_cols=107 Identities=28% Similarity=0.525 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||++++.. |.+||||++.+. ..+++|+++++++||.|||+|.|.+..... ....|.|+||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l-~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL-PTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh-CCCEEEEEEE
Confidence 457899999999999999975 899999999993 246899999999999999999999875432 1468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.++|.++- .......||+|.
T Consensus 92 d~~~~---~~~~~iG~~~i~L~~~~-~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSL---GRNSFLGEVEVDLGSWD-WSNTQPTWYPLQ 125 (125)
T ss_pred eCCCC---CCCcEeEEEEEecCccc-cCCCCcceEECc
Confidence 99998 68999999999999963 334456799873
No 73
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.68 E-value=2.3e-16 Score=150.99 Aligned_cols=108 Identities=23% Similarity=0.446 Sum_probs=91.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+++.. |.+||||++.+. ..++||+++++++||+|||+|.|.+..... .+..|.|.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l-~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL-SSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh-CCcEEEEEEE
Confidence 458999999999999999874 999999999983 247899999999999999999999876432 2478999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceec--CceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.|+|.++.-. +.....||+|.
T Consensus 92 ~~~~~---~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTL---KRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCC---cCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99998 6799999999999996333 34566899873
No 74
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=1.9e-16 Score=148.38 Aligned_cols=104 Identities=21% Similarity=0.353 Sum_probs=89.0
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 5 QKLIVEVVDARNLLPKDGH-GTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
|+|+|+|++|++|+..+.. |.+||||++.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 9999999999843 57899999999999999999998876532224789999999999
Q ss_pred CCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+ ++|++||++.+++.++... ..|+++..
T Consensus 81 ~---~~dd~lG~~~i~l~~l~~~----~~~~~~~~ 108 (111)
T cd04041 81 F---TADDRLGRVEIDLKELIED----RNWMGRRE 108 (111)
T ss_pred C---CCCCcceEEEEEHHHHhcC----CCCCcccc
Confidence 8 6799999999999998633 24887754
No 75
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.67 E-value=5.6e-16 Score=143.02 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=83.7
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
..|.|.|+|++|++|+ + .|.+||||.+.+.. .+.+|+++++|+||+|||.|.|+|.. +...|.|.||
T Consensus 12 ~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 12 QKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred cCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4689999999999996 2 35699999999754 45699999999999999999999873 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
|+|.++ ++++||++.++++++..+...++|..|
T Consensus 86 d~Drfs-----------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 86 CCDRFS-----------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCCCC-----------CCceEEEEEEccccccCCccccchhcC
Confidence 999987 689999999999987544444778654
No 76
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.67 E-value=3.1e-16 Score=149.95 Aligned_cols=107 Identities=28% Similarity=0.445 Sum_probs=90.1
Q ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+. .|.+||||++.+. ..++||+++++++||.|||+|.|.+..... .+..|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l-~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL-ETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh-CCCEEEEEEE
Confidence 56899999999999998875 5899999999993 246899999999999999999999876432 1468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.+++.++... .....|++|.
T Consensus 92 d~~~~---~~~~~lG~~~i~l~~~~~~-~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRF---GRNTFLGEVEIPLDSWNFD-SQHEECLPLH 125 (125)
T ss_pred ECCCC---CCCcEEEEEEEeCCccccc-CCcccEEECc
Confidence 99998 6899999999999996443 4466799974
No 77
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.67 E-value=1.9e-17 Score=175.89 Aligned_cols=110 Identities=30% Similarity=0.553 Sum_probs=97.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDY-----YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
...|.|+|.+|+||.++|.+|.|||||++.+ +..+++|++++.+|||+|||+|.|.+...+. +++|.|+||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecc
Confidence 4679999999999999999999999999999 2368999999999999999999999998876 68999999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGE 125 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~ 125 (1061)
|+. +++||+|...+.+++|.+.+..+ ||.|. +++.||
T Consensus 257 DrT---sRNDFMGslSFgisEl~K~p~~G--WyKlL-----sqeEGE 293 (683)
T KOG0696|consen 257 DRT---SRNDFMGSLSFGISELQKAPVDG--WYKLL-----SQEEGE 293 (683)
T ss_pred ccc---ccccccceecccHHHHhhcchhh--HHHHh-----hhhcCc
Confidence 999 79999999999999998876554 99654 445665
No 78
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=2.8e-16 Score=147.02 Aligned_cols=105 Identities=22% Similarity=0.434 Sum_probs=91.3
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDG-HGTSSPYVVIDYYGQRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|++|+||+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+..... .+..|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTY--- 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCC---
Confidence 6899999999998884 789999999999999999999999999999 9999999987542 146899999999998
Q ss_pred CCCceeEEEEEECccceec--CceeeEEEeccc
Q 001521 85 TRNNFLGRIRLSSSQFVKK--GEEALIYYPLEK 115 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~ 115 (1061)
+++++||++.+++.++... +.....||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6799999999999998764 233567999864
No 79
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=7.7e-16 Score=146.50 Aligned_cols=113 Identities=28% Similarity=0.406 Sum_probs=97.1
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC---eEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS---KWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~---~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 722 (1061)
|+|+|++|++|++. |..|.+||||++.+++ ...||++++++.||.|||.|.|.+... ...|.|+|||++...
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~- 77 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVM- 77 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCC-
Confidence 78999999999874 7788999999999753 456999999999999999999998754 467999999998763
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|++||++.++++++..+.....||+|... ..|+|++++.++
T Consensus 78 -----------~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 78 -----------DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred -----------CcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 88999999999999998888999999642 239999888764
No 80
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=7.9e-16 Score=147.20 Aligned_cols=114 Identities=24% Similarity=0.488 Sum_probs=99.0
Q ss_pred eEEEEEEEeecCCCCCcccCC------CCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNG------KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~------~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~ 717 (1061)
|.|+|+|++|++|+.. |. .|.+||||++++++...+|++++++.||.|||.|.|.+.+ ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~---d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAK---DKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCccc---ccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 6899999999999875 42 4789999999999988999999999999999999999975 468999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+.. +|++||++.++++++..+.....||+|... ..|+|+|++.|
T Consensus 78 ~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD------------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred CCC------------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 865 388999999999999887777899999642 24999998764
No 81
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=9.5e-16 Score=147.41 Aligned_cols=126 Identities=21% Similarity=0.332 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
.|+|+|++|++|+.. |..|.+||||++++++...+|+++.+++||.|||.|.|.+..+...|.|+|||++......-
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999874 78889999999999998899999999999999999999998777889999999985310000
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
..+.....|++||++.+++.++.... ..||+|........ ..|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~~-~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCCc-EeEEEEEEC
Confidence 00000125889999999999986544 78999987654333 359998864
No 82
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=5.4e-16 Score=145.56 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=87.0
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-C----C--eEEEecccCCCCCCccccEEEEEEecC----CcEEEEEE
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-A----S--KWIRTRTVSDSLEPRWNEQYTWKVYDP----CTVLALGV 714 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-~----~--~~~rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~v 714 (1061)
+|+|+|++|++|+.. | .|.+||||++++ | . ++.+|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 489999999999874 5 489999999996 3 2 246899999999999999999999732 25799999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
||++..+ +|++||++.++|+++..+.....|++|...
T Consensus 77 ~D~d~~~-----------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 77 KDYCFAR-----------DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EEecccC-----------CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 9998654 588999999999999998888899999654
No 83
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.66 E-value=5.4e-16 Score=151.51 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEe---------------c
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVY---------------D 705 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~---------------~ 705 (1061)
+|.|+|++|+||.+ .+|.+||||++.+.+ ...||+++++++||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 48999999999975 468899999999876 5669999999999999999999995 1
Q ss_pred C-CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC-cEEeeEEeceecCCCC---------CccccEEE
Q 001521 706 P-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG-KVYRNTYPLLLLGSNG---------MTKMGEIE 774 (1061)
Q Consensus 706 ~-~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~---------~~~~G~i~ 774 (1061)
. ...|.|.|||++..+ .|++||++.|+|..+..+ .....||+|..+.... ....|+|+
T Consensus 76 ~~~~~L~i~V~d~~~~~-----------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 144 (148)
T cd04010 76 AEKLELRVDLWHASMGG-----------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLR 144 (148)
T ss_pred ccEEEEEEEEEcCCCCC-----------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEE
Confidence 1 257999999998765 588999999999999876 4568999998764322 22347888
Q ss_pred EEE
Q 001521 775 VAV 777 (1061)
Q Consensus 775 l~~ 777 (1061)
|.+
T Consensus 145 ~~~ 147 (148)
T cd04010 145 LKI 147 (148)
T ss_pred Eec
Confidence 765
No 84
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=1.1e-15 Score=146.79 Aligned_cols=104 Identities=18% Similarity=0.288 Sum_probs=91.1
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEe
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFD 716 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d 716 (1061)
..|.|.|+|++|+||+++ |..|.+||||.++++ ....||+++++++||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 357999999999999875 788899999999973 3456999999999999999999998743 4689999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++.++ +|++||++.|+|+++..+...+.||+|+
T Consensus 91 ~~~~~-----------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS-----------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC-----------CCceeEEEEEecccccCCCCcceEEECc
Confidence 98875 5889999999999998777889999985
No 85
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=4.9e-16 Score=144.14 Aligned_cols=99 Identities=28% Similarity=0.414 Sum_probs=88.5
Q ss_pred EEEEEEEEeecCCC-----CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCC
Q 001521 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPP 410 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-----~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d 410 (1061)
.|.|+|++|+||+. .+||||+|+++++.++|++++++.||+|||.|.|.+.++. .+.|.|+|+|.+. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~v~v~d~~~------~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE-NQELEIEVKDDKT------G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC-CCEEEEEEEECCC------C
Confidence 38899999999975 8999999999999999999999999999999999999877 8899999999863 7
Q ss_pred CeeEEEEEECcccCCCCCCCCCCCCeeEEccCCC
Q 001521 411 GFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGG 444 (1061)
Q Consensus 411 ~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~ 444 (1061)
++||++.++|.++... .....++||+|++.+
T Consensus 74 ~~iG~~~i~l~~l~~~---~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKE---PDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhcc---ccceeeeeEecCCCC
Confidence 8999999999999874 134578999998753
No 86
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=1.7e-15 Score=145.98 Aligned_cols=117 Identities=24% Similarity=0.351 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~- 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV- 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC-
Confidence 6899999999999999999999999999864 4689999999999999999999998754 47899999999988
Q ss_pred CCCCCceeEEEEEECccceec--CceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
+++++||++.+++.++... +.....|++|.+ .|+|++++.+...
T Consensus 78 --~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 78 --GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred --CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 5799999999999875332 344568999864 6899999888754
No 87
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.66 E-value=4.4e-16 Score=147.58 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY------GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+..|.+||||++.+- ..+++|+++++++||+|||+|.|.+...+. .+..|.|+||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L-~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL-YQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh-hcCEEEEEEE
Confidence 568999999999999999888999999999982 247899999999999999999999876543 2689999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++.+ +++++||++.|+|.++-..+.....||.|
T Consensus 91 ~~~~~---~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPD---QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCC---CceeEEEEEEEEhhhccCCCccccccccC
Confidence 99988 68999999999999974444345569875
No 88
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.66 E-value=4.1e-16 Score=147.42 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||.+++ .|.+||||++.+.. .+++|+++++++||.|||+|.|.+..... ...|.|+|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~--~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY--QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh--CCEEEEEEEC
Confidence 4588999999999999998 88999999999942 46799999999999999999999876543 3579999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
++... +++++||++.|++.++. .+.....||.|
T Consensus 87 ~~~~~--~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS--RDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCc--CCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 99872 24789999999999986 45556789976
No 89
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=6.7e-16 Score=144.90 Aligned_cols=105 Identities=23% Similarity=0.390 Sum_probs=92.3
Q ss_pred ccEEEEEEEEeecCCC-CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCC---CCeEEEEEEcCCCCCCCCC
Q 001521 334 MHYLFVRVVKARFLPT-KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPES---SSFLEVSVWDPPRGDVAAP 409 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~---~~~L~i~V~d~d~~~~~~~ 409 (1061)
...|.|+|++|+||++ .+||||+|++++++++|++++++.||.|||+|.|.+..... ...|.|.|||++. +++
T Consensus 3 ~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~~ 79 (111)
T cd04011 3 DFQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LRS 79 (111)
T ss_pred cEEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---ccc
Confidence 5679999999999976 89999999999999999999999999999999999765421 4689999999987 678
Q ss_pred CCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC
Q 001521 410 PGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG 443 (1061)
Q Consensus 410 d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 443 (1061)
|++||++.++|.++... +++....+||+|.++
T Consensus 80 ~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred CCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 99999999999999874 456788999999863
No 90
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=3.1e-15 Score=144.17 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=100.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCcee
Q 001521 11 VVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFL 90 (1061)
Q Consensus 11 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~l 90 (1061)
|++|+||+. ..|++||||++.+++.+++|+++++++||+|||+|.|.+.... .....|.|+|||++.. ++|++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~---~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKV---GRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCC---CCCceE
Confidence 789999988 6789999999999999999999999999999999999997642 1258899999999998 679999
Q ss_pred EEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCC
Q 001521 91 GRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVP 137 (1061)
Q Consensus 91 G~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 137 (1061)
|++.+++.++... .....|++|.+... ....|+|+++++|.+...
T Consensus 76 G~~~~~l~~l~~~-~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 76 GSATVSLQDLVSE-GLLEVTEPLLDSNG-RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEhhHcccC-CceEEEEeCcCCCC-CcccEEEEEEEEEeCCCC
Confidence 9999999997654 44567999986542 335799999999998544
No 91
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=2e-15 Score=144.48 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=86.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
.+.|.|+|++|+||+++ |.. |.+||||.+++.+ .+.||+++++++||+|||.|.|++... ...|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 46999999999999885 664 8999999999643 256999999999999999999998642 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC---cEEeeEEec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG---KVYRNTYPL 759 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 759 (1061)
||++..+ ++++||++.|+|+++... .....||+|
T Consensus 91 ~~~~~~~-----------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK-----------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc-----------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998765 588999999999999653 355789998
No 92
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.3e-15 Score=141.88 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
.|.|.|+|++|++|.. .+..||||++++|+++.+|++++++ ||.|||.|.|.+.+....|.|+|||++..
T Consensus 1 m~~L~V~Vv~Ar~L~~------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 1 MSLLCVLVKKAKLDGA------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred CceEEEEEEEeeCCCC------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 3689999999999954 2356999999999999999999885 99999999999998888899999998864
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEE--eeEEeceec
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVY--RNTYPLLLL 762 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 762 (1061)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 ---------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ---------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ---------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 399999999999998765543 789999855
No 93
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=1e-15 Score=146.87 Aligned_cols=107 Identities=21% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--C-CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY--Y-GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||.+++..|.+||||++.+ + +..++|+++++++||.|||+|.|.+..... ....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l-~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL-PKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh-CCCEEEEEEEECC
Confidence 45899999999999999999999999999999 3 367899999999999999999999876432 1468999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++...+ ..+.|++|.
T Consensus 93 ~~---~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 93 QF---SRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CC---CCCceeEEEEEecccccCCC-CcceEEECc
Confidence 98 68999999999999975444 567899875
No 94
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.64 E-value=1.4e-15 Score=143.77 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=86.6
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec--CCcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD--PCTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~--~~~~l~i~v~d~ 717 (1061)
|.|.|+|++|+||+++ | .|.+||||.+.+.+ .+.||+++.+++||.|||.|.|++.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999886 6 78999999999754 24589999999999999999999863 336789999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
+... .++++||++.|+|.++..+.....||.|
T Consensus 88 ~~~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8754 1478999999999999877777899986
No 95
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.5e-15 Score=145.84 Aligned_cols=108 Identities=20% Similarity=0.373 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEe-ecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFN-VGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~-v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+.. |.+||||++.+. ++++||+++++++||.|||+|.|. +.... .....|.|+|||
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~-~~~~~L~~~V~d 92 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ-LQDLSLHFAVLS 92 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH-hCCCEEEEEEEE
Confidence 457999999999999998875 899999999984 357899999999999999999994 43322 113579999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceec-CceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKK-GEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~ 114 (1061)
+|.+ ++|++||++.++|.++--. +.+...|.+|.
T Consensus 93 ~d~~---~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 93 FDRY---SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cCCC---CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9998 6899999999999997433 34567899875
No 96
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.64 E-value=1.1e-15 Score=147.21 Aligned_cols=107 Identities=27% Similarity=0.537 Sum_probs=89.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..+.+||||++.+.+ .+++|+++++++||.|||+|.|.+..........|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4589999999999999999889999999999954 57899999999999999999998654321124789999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
++.. +++++||++.+++.+....+ ...||+|+
T Consensus 94 ~~~~---~~~~~iG~~~i~l~~~~~~~--~~~W~~L~ 125 (125)
T cd04031 94 YDRD---GENDFLGEVVIDLADALLDD--EPHWYPLQ 125 (125)
T ss_pred CCCC---CCCcEeeEEEEecccccccC--CcceEECc
Confidence 9998 67999999999999833322 34799984
No 97
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.2e-15 Score=149.15 Aligned_cols=106 Identities=24% Similarity=0.401 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCC--------------CCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeE
Q 001521 6 KLIVEVVDARNLLPKDGH--------------GTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMF 71 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L 71 (1061)
.|.|+|++|++|+.+|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. .+.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 478999999999998854 378999999999999999999999999999999999765432 4789
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCce------eeEEEecccc
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE------ALIYYPLEKK 116 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~------~~~w~~L~~~ 116 (1061)
.|+|||+|.. ++|++||++.+++.++...+.. +..|+.|...
T Consensus 79 ~~~v~D~d~~---~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRV---GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCC---CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 9999999998 6799999999999997665532 3468877654
No 98
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=2e-15 Score=145.18 Aligned_cols=108 Identities=25% Similarity=0.390 Sum_probs=91.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY---YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+ ++++++|+++++++||.|||+|.|.+..........|.++|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 46789999999999999998999999999999 347889999999999999999999854332122467999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++. .+.....|+.|.
T Consensus 94 ~~---~~~~~iG~~~i~l~~l~-~~~~~~~W~~l~ 124 (125)
T cd08386 94 RF---SRNDPIGEVSLPLNKVD-LTEEQTFWKDLK 124 (125)
T ss_pred CC---cCCcEeeEEEEeccccc-CCCCcceEEecC
Confidence 98 67999999999999965 454566899875
No 99
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=1.9e-15 Score=145.03 Aligned_cols=107 Identities=22% Similarity=0.382 Sum_probs=91.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||+.++..|.+||||++.+.. ..++|+++++++||.|||+|.|.+..... .+..|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l-~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL-GNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh-CCCEEEEEEEeCC
Confidence 4589999999999999999889999999999843 57899999999999999999999875321 1468999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++.. +.....|++|.
T Consensus 93 ~~---~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 93 RF---SKHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred CC---CCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 98 679999999999999644 55566899875
No 100
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3.2e-15 Score=143.69 Aligned_cols=119 Identities=27% Similarity=0.358 Sum_probs=99.2
Q ss_pred ceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCC--eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYAS--KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGI 720 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~--~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 720 (1061)
+|.|+|+|++|++|+.. + ..|.+||||++.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~---~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGS---DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcc---cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 58999999999999753 3 456799999999987 67799999999999999999999987678999999999876
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEcccccCCcEEe-eEEeceecCCCCCccccEEEEEEEEE
Q 001521 721 FEGENGSMETTRPDCRIGKVRIRISTLETGKVYR-NTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+ +|++||++.++|.++..+...+ .++++. ..+ +..|+|++.++|-
T Consensus 78 ~-----------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R-----------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C-----------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 5 5899999999999998776554 344553 223 3359999999984
No 101
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.63 E-value=4.4e-15 Score=142.51 Aligned_cols=103 Identities=27% Similarity=0.367 Sum_probs=89.8
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC---eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEeC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS---KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDS 717 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~---~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d~ 717 (1061)
.|.|.|+|++|+||++. |..|.+||||++.+.+ ...||+++++++||.|||.|.|.+... ...|.|.|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 47899999999999874 7788999999999643 456999999999999999999998742 46899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
+..+ +|++||++.++|+++..+...++||+|.
T Consensus 92 d~~~-----------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS-----------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC-----------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9875 5889999999999998877778999984
No 102
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.7e-15 Score=141.70 Aligned_cols=101 Identities=28% Similarity=0.404 Sum_probs=89.1
Q ss_pred EEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeEEEecccCCCCCCcc-ccEEEEEEecC---CcEEEEEEEeCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKWIRTRTVSDSLEPRW-NEQYTWKVYDP---CTVLALGVFDSWGIF 721 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 721 (1061)
|.|+|++|++|+++ | ..|.+||||++++++...||+++++++||.| ||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57999999999886 5 3688999999999998899999999999999 99999999853 378999999999876
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccC---CcEEeeEEecee
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLET---GKVYRNTYPLLL 761 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 761 (1061)
+|++||++.++++++.. +.....||+|..
T Consensus 78 -----------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 58899999999999977 345789999863
No 103
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.63 E-value=4.9e-16 Score=181.14 Aligned_cols=381 Identities=18% Similarity=0.164 Sum_probs=235.2
Q ss_pred EEEEEEEEeecCCC-----CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCC--------CCeEEEEEEcCC
Q 001521 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPES--------SSFLEVSVWDPP 402 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-----~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~--------~~~L~i~V~d~d 402 (1061)
-|+++|.+|++|.+ .+|||+.|.+-++...|.++.+|+||.|+++..|.-.+... -..+.++|+|.|
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 46788889999976 89999999999999999999999999999999997322210 467889999998
Q ss_pred CCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEEEEeccCCCCCCCcccc--CCCCCccccc
Q 001521 403 RGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAWKT--DTAGNVNSKA 480 (1061)
Q Consensus 403 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~--~~~~~~~~~~ 480 (1061)
. .+.++++|+......=... .-.-.|+++..++...|++.++..+-...- +-.+.. +......+..
T Consensus 287 r---~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~~l~gd~l~a~eliq~~~---~i~~p~~~~~~~~~~vp~ 354 (1105)
T KOG1326|consen 287 R---SGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGAFLDGDVLIAAELIQIGK---PIPQPPPQREIIFSLVPK 354 (1105)
T ss_pred h---hchHHhhcccccceEEEec------CCccceEEeecccccccchhHHHHHHhhcC---CCCCCCcccccceecccc
Confidence 8 6899999998764332221 123489999887666677665421110000 000000 0000000111
Q ss_pred ccccCCceEEEEEEEEEeeCCCCCcccC---CCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEE-eeccCC----CC
Q 001521 481 KVYVSPKLWYLRATVIEAQDILPPVAAL---KEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLF-VAAEPF----TD 552 (1061)
Q Consensus 481 ~~~~~~~l~~L~V~V~~a~~L~~~~d~~---~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f-~v~~~~----~~ 552 (1061)
++ .|.+..-.+.| -+.+|..+ ... ....|-+.+.+|++.+++..+.....||.|+..|.+ .+..+. -.
T Consensus 355 ~i--Rp~~q~~~~ev-l~wgLrn~-k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~p 430 (1105)
T KOG1326|consen 355 KI--RPKTQIGKAEL-LMWGLRNP-KKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMP 430 (1105)
T ss_pred CC--Ccceeeeeeeh-hhhhhccc-ccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCc
Confidence 11 12221111111 23455444 322 346788899999999999888756678888876643 333333 34
Q ss_pred eEEEEEEeccC-CCCceeEEEEEecc-ccccccc------c------------------ccccceEEEcccCC-------
Q 001521 553 QLSFTLENRQH-KGSVALGVTRVPLT-AVERRVD------D------------------RKVASRWFTFENTN------- 599 (1061)
Q Consensus 553 ~L~i~V~D~d~-~~d~~lG~~~i~l~-~l~~~~~------~------------------~~~~~~w~~L~~~~------- 599 (1061)
.+.+.|.|.+. +....+|.|.+.-. ...-+.. . +...+.|+......
T Consensus 431 pl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 510 (1105)
T KOG1326|consen 431 PLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREV 510 (1105)
T ss_pred cceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCccccccceeh
Confidence 89999999988 88999999987532 2111000 0 00011111111100
Q ss_pred ----------C---cc--CCccceEEEEEEee----------------------CCc--ccccCcc----------ccc-
Q 001521 600 ----------D---EK--RAYKGRVHLRLCFD----------------------GGY--HVMDEAA----------HVC- 629 (1061)
Q Consensus 600 ----------~---~~--~~~~G~i~l~i~l~----------------------~~~--~~~~~~~----------~~~- 629 (1061)
. +. ....+...|.++-. |.. ...+.+. +..
T Consensus 511 ~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~ 590 (1105)
T KOG1326|consen 511 DWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVP 590 (1105)
T ss_pred hhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceeeecCC
Confidence 0 00 01111233333310 000 0000000 000
Q ss_pred ----CCCchhh-hccC--CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE--EecccCCCCCCccccEEE
Q 001521 630 ----SDYRPTA-RQLW--KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI--RTRTVSDSLEPRWNEQYT 700 (1061)
Q Consensus 630 ----~d~~~~~-~~~~--~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~--rT~~~~~~~~P~wne~~~ 700 (1061)
++..|.. .++. .+..-.++|.|++|.+|.+ +|.+|.+|||+.+.+|++.+ +++.+.+|+||+|+++|.
T Consensus 591 ~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p---~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfe 667 (1105)
T KOG1326|consen 591 RNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQP---SDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFE 667 (1105)
T ss_pred CccCCCCChhhhhcccccCcceeeEEEEEEEeeeccc---cCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHH
Confidence 0101110 0111 1334567899999999998 49999999999999999986 888999999999999999
Q ss_pred EEEecCC-cEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEccc
Q 001521 701 WKVYDPC-TVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIST 746 (1061)
Q Consensus 701 ~~v~~~~-~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~ 746 (1061)
+....+. ..++++|||+|..+ .|+.||+..|.|..
T Consensus 668 l~~~lp~ek~l~v~vyd~D~~~-----------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 668 LECLLPFEKDLIVEVYDHDLEA-----------QDEKIGETTIDLEN 703 (1105)
T ss_pred hhcccchhhcceeEEEEeeccc-----------ccchhhceehhhhh
Confidence 9998776 67999999999886 59999999998865
No 104
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=2.5e-15 Score=139.35 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=82.7
Q ss_pred eEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC--CcEEEEEEEeCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALGVFDSWGIF 721 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 721 (1061)
|.|.|+|++|++|++.+... ..+.+||||++.++++..||+++++++||+|||.|.|.+.+. ...|.|.|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999863221 224689999999999999999999999999999999999753 358999999999876
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
+|++||++.++|++|..+.
T Consensus 81 -----------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----------CCcceEEEEEEHHHHHhhC
Confidence 5899999999999997654
No 105
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=3.4e-15 Score=143.24 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=94.7
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCC-CCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVR-DLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|.|+|++|++|+..+..+++||||+++++++.++|+++.+ ++||.|||+|.|.+..........|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-- 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-- 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC--
Confidence 689999999999999988899999999999998899999875 89999999999999886321247899999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
+++++||++.+++.++...+. ...|++|.+.+
T Consensus 79 -~~d~~iG~~~i~l~~l~~~~~-~~~~~~l~p~~ 110 (124)
T cd04049 79 -SDDDFIGEATIHLKGLFEEGV-EPGTAELVPAK 110 (124)
T ss_pred -CCCCeEEEEEEEhHHhhhCCC-CcCceEeeccc
Confidence 679999999999999876543 46799998854
No 106
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.62 E-value=6.4e-15 Score=142.94 Aligned_cols=115 Identities=24% Similarity=0.334 Sum_probs=99.3
Q ss_pred ceEEEEEEEeecCCCCCcccCC----------CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNG----------KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLAL 712 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~----------~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i 712 (1061)
.|.|+|+|++|++|.+. |. .|.+||||++.++++.+ +|+++++++||.|||.|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~---d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPT---DWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCC---CchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEE
Confidence 58999999999999875 43 36899999999998775 9999999999999999999996 4578999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC--CcEEeeEEeceecCCCCCccccEEEEEEEEEe
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET--GKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 781 (1061)
.|||++..+ +|++||++.++|+++.. +...+.|++|. ..|.|++++.+..
T Consensus 79 ~v~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIG-----------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCC-----------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999998765 58899999999999887 45568999995 2399999998874
No 107
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=2.6e-15 Score=149.95 Aligned_cols=109 Identities=25% Similarity=0.398 Sum_probs=91.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..|.|.|+|++|+||+..+..|.+||||++.+. ..+++|+++++++||.|||+|.|.+.......+..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468999999999999999989999999999882 368899999999999999999998643321224689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.++...+. ...|+.|.+
T Consensus 105 ~d~~---~~d~~lG~v~i~l~~~~~~~~-~~~w~~~~~ 138 (162)
T cd04020 105 HDKL---SSNDFLGGVRLGLGTGKSYGQ-AVDWMDSTG 138 (162)
T ss_pred CCCC---CCCceEEEEEEeCCccccCCC-ccccccCCh
Confidence 9998 679999999999999765543 467988865
No 108
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=2.6e-15 Score=143.42 Aligned_cols=107 Identities=25% Similarity=0.355 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEe-ecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFN-VGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~-v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|. +.... ..+..|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~-l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE-LNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH-hccCEEEEEEEEC
Confidence 457899999999999999989999999998772 36889999888 999999999998 54432 2257899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+.+ +++++||++.++|.++ ..+.....|++|.+
T Consensus 92 ~~~---~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p 124 (124)
T cd08389 92 ERM---RKERLIGEKVVPLSQL-NLEGETTVWLTLEP 124 (124)
T ss_pred CCc---ccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence 998 6899999999999997 34445678999863
No 109
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=7.8e-15 Score=142.98 Aligned_cols=90 Identities=31% Similarity=0.564 Sum_probs=83.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|+|++|+||...+. +.+||||++++++++++|+++++++||.|||+|.|.+.+. ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~--- 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTF--- 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCC---
Confidence 789999999999998887 8999999999999999999999999999999999999876 37899999999999
Q ss_pred CCCceeEEEEEECcccee
Q 001521 85 TRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~ 102 (1061)
++|++||++.+++.++..
T Consensus 74 ~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCEEEEEEEEHHHhhh
Confidence 679999999999988654
No 110
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.62 E-value=4.5e-15 Score=141.87 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=95.2
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-CeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-SKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|+|+|++|++|..+ |..|.+||||++.++ .+..||+++++++||.|||.|.|.+.. ...|.|+|||++..+.
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~--- 74 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK--- 74 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC---
Confidence 78999999999875 778899999999996 566799999999999999999999965 7899999999988752
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcE-EeeEEeceecCCCC-CccccEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKV-YRNTYPLLLLGSNG-MTKMGEIEVAV 777 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~-~~~~G~i~l~~ 777 (1061)
..|++||++.++++++..... ...||+|....... ....|+|.+.+
T Consensus 75 ------~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 ------KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ------CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 126899999999999875442 25699997665422 11238887764
No 111
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.62 E-value=6.9e-15 Score=141.27 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=86.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEE-Ee--c-CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWK-VY--D-PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~-v~--~-~~~~l~i~v~ 715 (1061)
.+.|+|+|++|+||++. |.. |.+||||++.+. .+..||+++++++||.|||.|.|. +. + ....|.+.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 46899999999999875 665 889999999974 345699999999999999999994 33 2 2357999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC--cEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG--KVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 760 (1061)
|++..+ +|++||++.|+|+++... +...+|.+|.
T Consensus 92 d~d~~~-----------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS-----------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC-----------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998875 588999999999999655 5678999885
No 112
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.61 E-value=2.2e-15 Score=144.89 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccC-CCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAV-RDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|++|++|+..+..+++||||++++++ ++++|+++. ++.||.|||.|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~- 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS- 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-
Confidence 4899999999999998889999999999988 899999985 58999999999999987621 1137899999999997
Q ss_pred CCCCCceeEEEEEECccceecCce----eeEEEeccccCCCCeeeeEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEE----ALIYYPLEKKSLLSWIQGEVGL 128 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~l~l 128 (1061)
++|++||++.+++.++...... ...||+|.+.. ++..|+|++
T Consensus 80 --~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 80 --LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred --CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 5799999999999998765542 46799998754 667898874
No 113
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=6.1e-15 Score=141.89 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=85.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec----CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v 714 (1061)
.|.|.|+|++|+||..+ |..+.+||||++++++ ...||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 47899999999999875 7778999999999764 45699999999999999999999754 347899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ .|++||++.++|++..... ..+||+|.
T Consensus 92 ~d~~~~~-----------~~~~iG~~~i~l~~~~~~~-~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG-----------ENDFLGEVVIDLADALLDD-EPHWYPLQ 125 (125)
T ss_pred EeCCCCC-----------CCcEeeEEEEecccccccC-CcceEECc
Confidence 9998875 5889999999999832222 26899983
No 114
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=7.6e-15 Score=142.80 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=98.1
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccC---------CCCeEEEEEEe
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP---------FTDQLSFTLEN 560 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~D 560 (1061)
.|+|+|++|++|+.+ |..+.+||||++.++++..||++++ ++.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~-d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAA-DKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCC-CCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 589999999999998 9999999999999999999999998 899999999999975321 12469999999
Q ss_pred ccC-CCCceeEEEEE-eccccccccccccccceEEEcccCCCccCCccceEEEEEEee
Q 001521 561 RQH-KGSVALGVTRV-PLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFD 616 (1061)
Q Consensus 561 ~d~-~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~ 616 (1061)
++. +++++||++.+ ++..+... .......+|++|... +...|+|++.+.+-
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~----~~~~Geil~~~~~~ 132 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKG----GQSAGELLAAFELI 132 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecC----CCchhheeEEeEEE
Confidence 998 88999999987 44444321 234567899999752 45789999988763
No 115
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.61 E-value=6.6e-15 Score=142.06 Aligned_cols=105 Identities=26% Similarity=0.364 Sum_probs=89.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.+.|.|+|++|+||+.+ |..+.+||||++.+. ....||++++++.||.|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47899999999999875 778899999999975 3557999999999999999999998632 378999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
|++.... .+|++||++.|+|.++..+.....||+|.
T Consensus 92 ~~~~~~~---------~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFLS---------REKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCcccC---------CCCceEEEEEEecccccccCCccceEECc
Confidence 9987521 15889999999999998777778999983
No 116
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=6.3e-15 Score=141.70 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=89.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe---CCeEEEecccCCCCCCccccEEEEEEec----CCcEEEEEEEe
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGVFD 716 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v~d 716 (1061)
.+.|.|.|++|+||+.+ |..|.+||||.+.+ ++...||++++++.||.|||.|.|.+.. ....|.++|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 46899999999999875 77889999999997 3456799999999999999999998542 23679999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ ++++||++.++++++..+...+.||+|.
T Consensus 92 ~d~~~-----------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS-----------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc-----------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 5889999999999999888789999985
No 117
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.60 E-value=9e-15 Score=167.59 Aligned_cols=184 Identities=17% Similarity=0.277 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHHHHHHHHHHHcChh--hHHHHHHHHHHHHhhcccc-cCCCC
Q 001521 851 MRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDL--IVPTLAFYVFVIGVWNYRF-RKRDP 927 (1061)
Q Consensus 851 ~~~~~~N~~Rl~~~~~~~~~~~~~i~~l~~W~~P~~T~~~~~~~~~~~~~p~l--~~p~~~~~l~~~~~~~~~~-~~~~~ 927 (1061)
..-+-+|+.-|++++.|+..+..+++.+.+|++|.+|+.|++++.+++|..|+ ++|.++++++++|+|.+.. +.+.+
T Consensus 482 veGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~ 561 (683)
T PF04842_consen 482 VEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS 561 (683)
T ss_pred hcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 34466899999999999999999999999999999999999999999998777 4999999999999997654 32221
Q ss_pred CCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHH
Q 001521 928 LPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVG 1007 (1061)
Q Consensus 928 ~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va~~~E~~~nl~~w~~P~~t~~~~~ 1007 (1061)
. ++...+.|+.++. ++++-++|+...++++.|+.++.++.|+|.++.|..|.+|..+++
T Consensus 562 ~------------------~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~ 620 (683)
T PF04842_consen 562 F------------------GEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVAL 620 (683)
T ss_pred c------------------ceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 1 2222333333443 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhc-CCcccCCCC----ChhhHHhhcCCC
Q 001521 1008 LCFVVAMILYLVPSKMVAMAFGFYYLR-HPMFRDRMP----SPALNFFRRLPS 1055 (1061)
Q Consensus 1008 ~l~~~~~vl~~iP~r~i~l~~g~~~l~-~P~~~~~~p----~~~~~~~~r~Ps 1055 (1061)
+++++++++.++|+||++++..+..|. +=.+|...- ..+..||-++|.
T Consensus 621 ~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 621 ALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999998887643 222444210 223466777774
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.60 E-value=1.1e-14 Score=139.80 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=87.8
Q ss_pred ceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
.|.|.|+|++|+||+++ | ..|.+||||.+.+.+ ...+|++++++.||.|||.|.|.+... ...|.|.|
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 13 TGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 57899999999999875 6 678999999998632 346999999999999999999998742 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
||++..+ ++++||++.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG-----------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc-----------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998775 588999999999999777667899987
No 119
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=5e-15 Score=138.95 Aligned_cols=105 Identities=20% Similarity=0.396 Sum_probs=88.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~~ 82 (1061)
...|+|+|++|++|. .|.+||||++++++++++|+++++++||.|||+|.|.+..... ..+..|.|+|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~- 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL- 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-
Confidence 467999999999997 5789999999999999999999999999999999999865431 1136799999999998
Q ss_pred CCCCCceeEEEEEECccceecCc--eeeEEEeccc
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGE--EALIYYPLEK 115 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~ 115 (1061)
++|++||++.+++.++..... ....|++|..
T Consensus 78 --~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 --RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred --ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 579999999999999765432 2568999864
No 120
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=4e-15 Score=139.45 Aligned_cols=99 Identities=25% Similarity=0.352 Sum_probs=85.6
Q ss_pred eEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEec----CCcEEEEEEEe
Q 001521 645 GTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGVFD 716 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v~d 716 (1061)
|.|+|+|++|++|+++ |.. |.+||||++++. ....+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999875 776 899999999974 345699999999999999999998874 35789999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ +|++||++.++++++... ..|+++.
T Consensus 78 ~d~~~-----------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99876 588999999999999743 4788875
No 121
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=7.2e-15 Score=139.43 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=91.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... +.|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~~-- 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEKV-- 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCCC--
Confidence 68999999999999999899999999999977 5789999999999999999999987653 7899999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
++|++||++.+++.++..... ..||.|.+.+
T Consensus 75 -~~d~~IG~~~~~l~~l~~~~~--~~~~~~~~~~ 105 (120)
T cd04045 75 -GKDRSLGSVEINVSDLIKKNE--DGKYVEYDDE 105 (120)
T ss_pred -CCCCeeeEEEEeHHHhhCCCC--CceEEecCCC
Confidence 679999999999999877633 4588776543
No 122
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=5.8e-15 Score=140.10 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=81.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
+.+.|+|+|++|++|. .+..|.+||||+|.+++++++|+++++++||+|||+|.|....... ...|.|+|||++.+
T Consensus 26 ~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~--~~~L~v~V~D~d~~- 101 (127)
T cd04032 26 GLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSP--GGKLRFEVWDRDNG- 101 (127)
T ss_pred CcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCC--CCEEEEEEEeCCCC-
Confidence 3489999999999997 4667899999999999999999999999999999999997543321 57899999999998
Q ss_pred CCCCCceeEEEEEECccce
Q 001521 83 PTTRNNFLGRIRLSSSQFV 101 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~ 101 (1061)
++|++||++.+++....
T Consensus 102 --s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 --WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred --CCCCeeEEEEEEecCCc
Confidence 68999999999999754
No 123
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.59 E-value=6.6e-15 Score=141.20 Aligned_cols=106 Identities=28% Similarity=0.516 Sum_probs=90.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||+..+ ..+.+||||++.+.. .+++|+++++++||.|||+|.|.+...... ...|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEE
Confidence 4689999999999999988 788999999998831 468999999999999999999998764321 468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++.+ +++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~~---~~~~~iG~~~i~l~~l~-~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRF---GRNTFLGEVEIPLDSWD-LDSQQSEWYPL 123 (123)
T ss_pred eCCCC---cCCceeeEEEEeccccc-ccCCCccEEEC
Confidence 99988 67999999999999974 34445789986
No 124
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.59 E-value=8.5e-15 Score=141.27 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+. ..+++|+++++++||+|||+|.|.+..... ....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l-~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL-KRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh-cCCEEEEEEEE
Confidence 458999999999999999988999999999994 368899999999999999999999875432 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
++.+.. +++++||++.+++.++.. +.....||+|.
T Consensus 93 ~~~~~~-~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLS-REKKLLGQVLIDLSDLDL-SKGFTQWYDLT 127 (127)
T ss_pred CCcccC-CCCceEEEEEEecccccc-cCCccceEECc
Confidence 987521 468999999999999744 34456899874
No 125
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2.1e-14 Score=138.74 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=102.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
...|.|.|++|++|+++ .+|||.+.+++..+ ||+++.++.||.|+|.|.|+...+...|+|.||+.+...+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence 35799999999999874 37999999999986 9999999999999999999877777889999987654321
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCC-------CccccEEEEEEEEEec
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG-------MTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------~~~~G~i~l~~~f~~~ 782 (1061)
. ..++.+||++.||+.++..+...+.||||.....+. .+..|+|+++++|...
T Consensus 82 ----~---~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 ----K---KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ----c---ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 0 025889999999999999998889999999775443 2334799999999854
No 126
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=1.6e-14 Score=139.62 Aligned_cols=122 Identities=15% Similarity=0.279 Sum_probs=99.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCC-C
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAY-G 82 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~-~ 82 (1061)
..|.|.|++|++|++++ +|||.|.+++++ .||+++.++.||.|+|+|+|...... ..|.|.||+.+.. +
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCccc
Confidence 46899999999998865 899999999976 69999999999999999999765543 6799999876543 1
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCC--------eeeeEEEEEEEEEeCC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS--------WIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~~~ 136 (1061)
...++++||.+.|++.++. .+...+.||+|....... ...+.|++++.|.+..
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 1025789999999999976 566678999998865443 4457999999998753
No 127
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=1.9e-14 Score=138.60 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=99.1
Q ss_pred EEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEeCCCCCCCCCCC
Q 001521 651 VIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDSWGIFEGENGS 727 (1061)
Q Consensus 651 v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~ 727 (1061)
|++|++|+. ..|++||||++.+++...+|++++++.||.|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 789999964 578899999999999999999999999999999999999754 589999999998876
Q ss_pred CCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 728 METTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 728 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+|++||++.++|+++..+.....|++|..... ....|+|++++.|.+..
T Consensus 71 -----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 -----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RPTGATISLEVSYQPPD 119 (127)
T ss_pred -----CCceEEEEEEEhhHcccCCceEEEEeCcCCCC--CcccEEEEEEEEEeCCC
Confidence 58899999999999998887788999975432 22248999999998653
No 128
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.4e-14 Score=137.67 Aligned_cols=115 Identities=27% Similarity=0.423 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|+.. |.+||||.+.++++ .++|+++++ +||.|||+|.|.+..... ....|.|.+||.+.. .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~---~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSK---D 73 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccC---C
Confidence 78999999999876 78999999999884 589999988 999999999999987432 135788889998876 4
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++.++|.+.+.... . +.....||+|.+........|+|++++.|
T Consensus 74 ~~~~~g~v~l~~~~--~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGKVALSKLD--L-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEEEEecCcC--C-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 56677776555433 2 44456899999876556679999999875
No 129
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.58 E-value=3.2e-14 Score=138.74 Aligned_cols=91 Identities=30% Similarity=0.486 Sum_probs=84.0
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
+|.|+|+|++|++|+.. |. +.+||||+++++++..+|+++++++||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 58999999999999864 65 7899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
+|++||++.+++..+..
T Consensus 75 ---------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ---------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ---------CCCEEEEEEEEHHHhhh
Confidence 58999999999988754
No 130
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.58 E-value=7e-15 Score=142.81 Aligned_cols=106 Identities=22% Similarity=0.451 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEEEeeccCCCCCCeeeceeEEeecCCC------------CCCCCe
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY----GQRRKTHTAVRDLNPTWNEALEFNVGKPP------------QVFTDM 70 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~------------~~~~~~ 70 (1061)
|+|+|++|+||+.+ ..|.+||||++.++ +..++|+++.++.||.|||+|.|.+.... ......
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78999999999998 68899999999999999999999988752 112578
Q ss_pred EEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 71 FELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 71 L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|.|+|||++.. ++++|||++.+++.++...+ ....||+|.+++
T Consensus 80 l~i~V~d~~~~---~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV---SGDDFLGEVRIPLQGLQQAG-SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC---cCCcEEEEEEEehhhccCCC-cccceEecCCcC
Confidence 99999999988 57999999999999976433 356899999864
No 131
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.58 E-value=2.4e-14 Score=137.14 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=97.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
-.|.|+|.+|+ |...+..+.+||||++.++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~-- 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTL-- 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCC--
Confidence 46899999999 555555889999999999887 8999999999999999999999864 46899999999998
Q ss_pred CCCCceeEEEEEECccceecCc--e--eeEEEeccccCC-CCeeeeEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGE--E--ALIYYPLEKKSL-LSWIQGEVGLKI 130 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~--~--~~~w~~L~~~~~-~~~~~G~l~l~~ 130 (1061)
+++++||++.+++.++..... . ...|++|...+. .+...|+|.+++
T Consensus 74 -~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 -KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 679999999999999765432 1 235898876553 456789999875
No 132
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.58 E-value=1.4e-14 Score=138.96 Aligned_cols=108 Identities=18% Similarity=0.374 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||+.++ ..+.+||||++.+. ...++|+++++++||+|||+|.|.+...... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEEC
Confidence 4678999999999999998 68899999999983 3678999999999999999999998764321 35799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+.. +++++||++.++|.++... .....|++|.+
T Consensus 91 ~~~---~~~~~iG~~~i~L~~l~~~-~~~~~w~~L~~ 123 (123)
T cd08390 91 DRF---SRHCIIGHVLFPLKDLDLV-KGGVVWRDLEP 123 (123)
T ss_pred CcC---CCCcEEEEEEEeccceecC-CCceEEEeCCC
Confidence 988 5789999999999996543 34568999863
No 133
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=2.6e-14 Score=136.52 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=87.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEE-Eec---CCcEEEEEEEe
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWK-VYD---PCTVLALGVFD 716 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~-v~~---~~~~l~i~v~d 716 (1061)
.+.|.|+|++|+||+++ |..|.+||||.+.+. .++.||+++++ +||+|||.|.|+ +.. ....|.+.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 46899999999999885 778899999987742 34569999888 999999999998 542 34789999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 91 ~~~~~-----------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR-----------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc-----------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99876 5889999999999998888889999985
No 134
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.57 E-value=3e-14 Score=136.57 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred CceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
..+.|.|.|++|++|+++ | ..|.+||||.+++. ....+|+++++++||.|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 357899999999999875 6 57889999999963 3446999999999999999999998743 368999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS-----------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC-----------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 5889999999999998887778999985
No 135
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.57 E-value=1.4e-14 Score=137.41 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=87.7
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--C----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--S----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALG 713 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~ 713 (1061)
..+.|.|+|++|+||.++ |..|.+||||.+++- . .+.||+++++++||+|||.|.|++.. ....|.|+
T Consensus 12 ~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 12 GDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred CCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 457999999999999886 778899999999942 2 36799999999999999999999874 34789999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc-EEeeEEec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK-VYRNTYPL 759 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 759 (1061)
|||++..+ ++++||.+.|+|+++.... ...+||+|
T Consensus 89 V~~~~~~~-----------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQ-----------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCC-----------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 99998765 5889999999999996543 46789876
No 136
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.57 E-value=3.7e-14 Score=136.56 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=99.8
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECC---eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CC
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGF---QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KG 565 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~ 565 (1061)
.|+|+|++|++|+.. +.++.+||||++.+++ ...||+++. ++.||.|||+|.|.+.......|.|+|||++. ++
T Consensus 2 ~~~V~v~~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~ 79 (126)
T cd04043 2 LFTIRIVRAENLKAD-SSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79 (126)
T ss_pred EEEEEEEEeECCCCC-CCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence 389999999999998 8889999999999863 467999988 89999999999999887656789999999988 78
Q ss_pred CceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCC
Q 001521 566 SVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGG 618 (1061)
Q Consensus 566 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~ 618 (1061)
+++||++.++|+.+.... .......|++|.+ .|++++++.+.+.
T Consensus 80 ~~~iG~~~i~l~~~~~~~-~~~~~~~w~~l~~--------~g~i~l~~~~~~~ 123 (126)
T cd04043 80 HDLCGRASLKLDPKRFGD-DGLPREIWLDLDT--------QGRLLLRVSMEGE 123 (126)
T ss_pred CceEEEEEEecCHHHcCC-CCCCceEEEEcCC--------CCeEEEEEEEeee
Confidence 999999999999765321 1334678999975 5999999988653
No 137
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.3e-14 Score=135.94 Aligned_cols=101 Identities=21% Similarity=0.373 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccc
Q 001521 22 GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQF 100 (1061)
Q Consensus 22 ~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l 100 (1061)
..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.+.. .+.|.|.|||++.+ +|++||++.++|.++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~----~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR----HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC----CCCeEEEEEecHHHH
Confidence 478999999999988 4689999999999999999999998764 57899999999987 489999999999998
Q ss_pred eecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 101 VKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 101 ~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
...+.....||+|.+. ..|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 6655556789999853 3899999999986
No 138
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.57 E-value=4.8e-14 Score=137.70 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=93.6
Q ss_pred EEEEEEeecC--CCCCcccCCCCCCCcEEEEEe-----CCeEEEecccCCCCCCccccEEEEEEecC---------CcEE
Q 001521 647 VELGVIGCKN--LLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYDP---------CTVL 710 (1061)
Q Consensus 647 l~v~v~~a~~--L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~~~P~wne~~~~~v~~~---------~~~l 710 (1061)
..++|..|++ |++. +..+.+||||.+++ +.+..||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4556666666 6553 77889999999985 34577999999999999999999999654 2569
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEe
Q 001521 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 711 ~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 781 (1061)
.|+|||++.+. .+|++||++.++|+.+..+.....|++|... .....|.|+++++...
T Consensus 81 ~~~V~d~~~f~----------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 81 KFEVYHKGGFL----------RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEEeCCCcc----------cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEecC
Confidence 99999998864 1599999999999999877666789998632 1122389999998863
No 139
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=1.4e-14 Score=141.73 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCccc-----------CCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC--CcEEEE
Q 001521 646 TVELGVIGCKNLLPMKTV-----------NGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLAL 712 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~-----------d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i 712 (1061)
.|.|+|++|++|++++.. +..+.+||||++.++++..||+++++++||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999987311 1235799999999999999999999999999999999998644 479999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-------EeeEEeceec
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKV-------YRNTYPLLLL 762 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~ 762 (1061)
+|||++..+ +|++||++.|+++++..... -.+|+.|...
T Consensus 81 ~v~D~d~~~-----------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 81 QIRDWDRVG-----------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEECCCCC-----------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999876 58999999999999865442 2477777643
No 140
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=1.9e-14 Score=136.62 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=84.8
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec--CCcEEEEEEEeCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD--PCTVLALGVFDSW 718 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~--~~~~l~i~v~d~~ 718 (1061)
+..+|.|+|+|++|++|.. |..|.+||||+|+++++..||+++++++||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4668999999999999963 677899999999999998999999999999999999998543 4689999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
..+ +|++||++.++|.....+.
T Consensus 100 ~~s-----------~dd~IG~~~i~l~~~~~~~ 121 (127)
T cd04032 100 NGW-----------DDDLLGTCSVVPEAGVHED 121 (127)
T ss_pred CCC-----------CCCeeEEEEEEecCCceee
Confidence 876 5999999999999876543
No 141
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.3e-14 Score=135.56 Aligned_cols=112 Identities=28% Similarity=0.430 Sum_probs=94.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|+|+|++|++|...+..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+.... .+.|.|+|||++.. +
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~---~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRG---G 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCC---C
Confidence 589999999999998889999999999976 5689999999999999999999998654 57899999999988 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVG 127 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~ 127 (1061)
++++||++.+++.++.. +.....|++|.+++ ....|.|.
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g--~~~~~~~~ 113 (115)
T cd04040 75 KDDLLGSAYIDLSDLEP-EETTELTLPLDGQG--GGKLGAVF 113 (115)
T ss_pred CCCceEEEEEEHHHcCC-CCcEEEEEECcCCC--CccCceEE
Confidence 79999999999999654 44467899998754 23456554
No 142
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.57 E-value=1.3e-14 Score=142.17 Aligned_cols=100 Identities=29% Similarity=0.527 Sum_probs=86.3
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeccCCCCCCee
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----------------------------QRRKTHTAVRDLNPTW 52 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~tlnP~W 52 (1061)
...+.|.|+|++|+||.++|..|.+||||+|.+.. ..++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 45689999999999999999999999999999853 2378999999999999
Q ss_pred eceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 53 NEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 53 ~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
||+|.|.+.... ...|.|+|||++ ++|||++.+++.++... ..+.||+|
T Consensus 105 nE~F~f~v~~~~---~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~~--~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVS---NDQLHLDIWDHD-------DDFLGCVNIPLKDLPSC--GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCC---CCEEEEEEEecC-------CCeEEEEEEEHHHhCCC--CCCCeEeC
Confidence 999999997654 478999999987 47999999999997633 35789986
No 143
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.56 E-value=1.7e-14 Score=138.62 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccC-CCCCCccccEEEEEEecC-----CcEEEEEEEeCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVS-DSLEPRWNEQYTWKVYDP-----CTVLALGVFDSW 718 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~-~~~~P~wne~~~~~v~~~-----~~~l~i~v~d~~ 718 (1061)
.|+|+|++|++|+.. +..+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 389999999999874 6788999999999988 788999986 589999999999999877 589999999998
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-----EeeEEeceecCCCCCccccEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKV-----YRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
..+ +|++||++.|+|.++..+.. ...||+|.... |.. .|.|++
T Consensus 78 ~~~-----------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~-~G~~~~ 125 (125)
T cd04051 78 PSL-----------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKP-QGVLNF 125 (125)
T ss_pred CCC-----------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCc-CeEEeC
Confidence 765 58899999999999976543 36899998643 433 388864
No 144
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=1.2e-14 Score=140.19 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 3 AIQKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
..+.|.|.|++|+||..++. .+.+||||+|.+.. .+++|+++++++||+|||+|.|.+..... .+..|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L-~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELL-AASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHh-CccEEEEEE
Confidence 56889999999999999983 35699999999843 36799999999999999999999886542 256899999
Q ss_pred eeCCCCCCCCCCceeEEEEEECcc
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
||+|.+ +++++||++.+.+..
T Consensus 92 ~d~d~~---~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSP---GQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCC---cCcceeceEEecCcC
Confidence 999998 689999999999864
No 145
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.56 E-value=2.9e-14 Score=142.36 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=88.9
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEec----CCcEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLAL 712 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i 712 (1061)
...|.|+|+|++|+||++. |..|.+||||.+.+. ....||+++++++||.|||.|.|.+.. ....|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 4579999999999999885 778899999999862 345699999999999999999998642 2358999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
+|||++..+ +|++||++.++++++........|+.+.
T Consensus 101 ~V~d~d~~~-----------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS-----------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC-----------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999875 5899999999999997665557888774
No 146
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.56 E-value=8.5e-15 Score=141.37 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=84.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
.+.|.|+|++|+||+++ |..|.+||||.+++.+ + +.||+++++++||+|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 14 AERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 46899999999999885 7789999999999632 2 4489999999999999999999874 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.|..... +...++|+.+..
T Consensus 91 ~~d~~~-----------~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 91 ESTEDG-----------KTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred eCCCCC-----------CCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 999876 588999999987754 344478877754
No 147
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.55 E-value=7.5e-14 Score=136.37 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=96.1
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE----C-CeEEEeeccCCCCCCeeeceeEEeecCCC-----CCCCCeEEEE
Q 001521 7 LIVEVVDARN--LLPKDGHGTSSPYVVIDY----Y-GQRRKTHTAVRDLNPTWNEALEFNVGKPP-----QVFTDMFELN 74 (1061)
Q Consensus 7 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~----~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~-----~~~~~~L~v~ 74 (1061)
..++|..|++ |++.+..+.+||||++.+ . .+++||+++++|+||+|||+|.|.+.... ......|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 778887889999999997 2 27999999999999999999999996542 1114579999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|||++.+. ++|++||++.++|..+.... ....|++|... .....|+|++++.....
T Consensus 84 V~d~~~f~--~~D~~iG~~~i~L~~l~~~~-~~~~~~~L~~~--~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFL--RSDKLLGTAQVKLEPLETKC-EIHESVDLMDG--RKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcc--cCCCeeEEEEEEcccccccC-cceEEEEhhhC--CCCcCCEEEEEEEecCC
Confidence 99999862 46999999999999964443 34469998742 22468999999998764
No 148
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.55 E-value=3e-14 Score=136.75 Aligned_cols=103 Identities=26% Similarity=0.354 Sum_probs=91.8
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecC----CcEEEEEEEeCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDP----CTVLALGVFDSWG 719 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~----~~~l~i~v~d~~~ 719 (1061)
|.|+|+|++|++|+.+ +..+.+||||++++++...+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999875 77789999999999998889999885 89999999999999876 5789999999988
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.+ +|++||++.+++.++..+...+.||+|..
T Consensus 78 ~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS-----------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC-----------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 58899999999999987666688999865
No 149
>PLN03008 Phospholipase D delta
Probab=99.55 E-value=3.1e-14 Score=167.93 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEc
Q 001521 666 KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744 (1061)
Q Consensus 666 ~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l 744 (1061)
.++|||||+|.++++++ ||+++++++||+|||.|.|.+.++.+.|+|+|||+|.++ +++||++.|||
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------------aD~IG~a~IPL 141 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------------AQIIGTAKIPV 141 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------------CceeEEEEEEH
Confidence 45789999999998755 999999999999999999999998899999999999986 57999999999
Q ss_pred ccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 745 ~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
.++..|...+.|++|.....+..+..|.|++++.|.+-
T Consensus 142 ~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 142 RDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred HHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999998899999988765545555899999999864
No 150
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.55 E-value=1.9e-14 Score=138.96 Aligned_cols=93 Identities=26% Similarity=0.407 Sum_probs=80.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.... ..+..|.|+|||
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~-l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV-LQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH-hCCcEEEEEEEe
Confidence 457899999999999999989999999999993 2 3678999999999999999999987643 225789999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
+|.+ +++++||++.+....
T Consensus 92 ~d~~---~~~~~iG~v~lg~~~ 110 (136)
T cd08406 92 STED---GKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCC---CCCCeeEEEEECCCC
Confidence 9998 689999999997653
No 151
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.53 E-value=6e-14 Score=132.87 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=80.7
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCC-CCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDL-NPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tl-nP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
...++|.|.|++|+||++.+..+.+||||+|++- + .++||+++++|+ ||.|||+|.|.+..... +..|.|+|
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v 88 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKL 88 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh--eeEEEEEE
Confidence 4678999999999999988667788999999982 2 588999999996 69999999999987542 57899999
Q ss_pred eeCCCCCCCCCCceeEEEEEECcc
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
||++.. +++++||++.+....
T Consensus 89 ~d~~~~---~~n~~IG~v~lG~~~ 109 (135)
T cd08692 89 YSRSSV---RRKHFLGQVWISSDS 109 (135)
T ss_pred EeCCCC---cCCceEEEEEECCcc
Confidence 999988 789999999999876
No 152
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=3.9e-14 Score=137.31 Aligned_cols=107 Identities=32% Similarity=0.574 Sum_probs=92.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.+.|+|+|++|+||+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+..... ...|.|+|||+
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~--~~~l~v~v~d~ 89 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK--DRRLSIEVWDW 89 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc--CCEEEEEEEEC
Confidence 478999999999999988889999999999953 68999999999999999999999876532 47899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
+.. +++++||++.+++.++... ....||+|.+..
T Consensus 90 ~~~---~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 90 DRT---TRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CCC---CCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 988 5799999999999997644 455799987754
No 153
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=5.8e-14 Score=133.21 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=91.0
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
|.|+|+|++|++|... |..|.+||||++.++++ ..+|++++++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 7899999999999874 77889999999999874 56999999999999999999999888889999999999876
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+|++||++.+++.++..+. .+.||-|...+
T Consensus 76 ---------~d~~IG~~~~~l~~l~~~~-~~~~~~~~~~~ 105 (120)
T cd04045 76 ---------KDRSLGSVEINVSDLIKKN-EDGKYVEYDDE 105 (120)
T ss_pred ---------CCCeeeEEEEeHHHhhCCC-CCceEEecCCC
Confidence 5889999999999998764 37788876543
No 154
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.4e-14 Score=137.24 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=90.8
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeC----CeEEEecccCCCCCCccccEEEEEEecC----------------
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA----SKWIRTRTVSDSLEPRWNEQYTWKVYDP---------------- 706 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~----~~~~rT~~~~~~~~P~wne~~~~~v~~~---------------- 706 (1061)
|+|.|++|++|..+ ..|.+||||.++++ +...+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK----SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc----cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57999999999762 46789999999988 6678999999999999999999999864
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCC
Q 001521 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG 766 (1061)
Q Consensus 707 ~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 766 (1061)
...|.|+|||++..+ ++++||++.|++.++........||+|......+
T Consensus 77 ~~~l~i~V~d~~~~~-----------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 77 KSELRVELWHASMVS-----------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAPG 125 (137)
T ss_pred ccEEEEEEEcCCcCc-----------CCcEEEEEEEehhhccCCCcccceEecCCcCCCC
Confidence 468999999999875 5889999999999998766678999998875433
No 155
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=5.9e-14 Score=134.19 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=80.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR--RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
+|+|.|++|++|...+..|++||||++.++++. .+|+++++++||.|||+|.|.+.... ...|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~-- 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLL-- 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCC--
Confidence 589999999999999999999999999998854 57888999999999999999987654 47899999999998
Q ss_pred CCCCceeEEEEEECccce
Q 001521 84 TTRNNFLGRIRLSSSQFV 101 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~ 101 (1061)
++|++||++.+++++..
T Consensus 76 -~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 76 -GSDDLIGETVIDLEDRF 92 (124)
T ss_pred -CCCceeEEEEEeecccc
Confidence 67999999999999853
No 156
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.53 E-value=5e-14 Score=137.99 Aligned_cols=100 Identities=26% Similarity=0.401 Sum_probs=86.6
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-----------------------------EEEecccCCCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-----------------------------WIRTRTVSDSL 691 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-----------------------------~~rT~~~~~~~ 691 (1061)
.++.+.|+|+|++|+||.++ |..|.+||||.+.+++. ..+|+++.+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 47899999999999999885 88899999999997532 25899999999
Q ss_pred CCccccEEEEEEecC-CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 692 EPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 692 ~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
||.|||.|.|.+.+. ...|.|+|||++ |++||++.++++++... ...+||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d---------------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD---------------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC---------------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999999999864 478999999985 45999999999999843 35899987
No 157
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.52 E-value=9.8e-14 Score=134.61 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=80.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-------CeEEEecccCCCCCCccccEEEEEEecC-----CcEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-------SKWIRTRTVSDSLEPRWNEQYTWKVYDP-----CTVLA 711 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-------~~~~rT~~~~~~~~P~wne~~~~~v~~~-----~~~l~ 711 (1061)
.+.|+|+|++|++|+++ |..|.+||||++++. ....||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 46899999999999875 778899999999975 2456999999999999999999998752 46899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC
Q 001521 712 LGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 712 i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
|+|||++..+ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~-----------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG-----------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC-----------CCcEeEEEEEeHHHCCc
Confidence 9999999876 58899999999999874
No 158
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=3.2e-14 Score=137.09 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=83.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.|+|.|.|++|+||.+++. +..+.+||||++.+.+ + +.||+++++++||+|||.|.|.+... ...|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~-~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQL-KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCcccc-CCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 5789999999999998621 1234599999999544 2 34899999999999999999999842 477999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.+++... |...++|..+..
T Consensus 93 d~d~~~-----------~~d~iG~v~lg~~~~--g~~~~hW~~ml~ 125 (138)
T cd08407 93 NQDSPG-----------QSLPLGRCSLGLHTS--GTERQHWEEMLD 125 (138)
T ss_pred eCCCCc-----------CcceeceEEecCcCC--CcHHHHHHHHHh
Confidence 999876 588999999999863 444477777653
No 159
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.52 E-value=6.6e-14 Score=136.61 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=87.1
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
...+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+..... ....|.|+||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l-~~~~l~~~v~ 90 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI-QKVHLIVTVL 90 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh-CCCEEEEEEE
Confidence 3568999999999999999999999999999994 2 46789999999999999999999865431 1357999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
|++.+ ++|++||++.+++... +.....|+++..
T Consensus 91 d~~~~---~~~~~iG~~~i~~~~~---~~~~~~W~~~~~ 123 (136)
T cd08402 91 DYDRI---GKNDPIGKVVLGCNAT---GAELRHWSDMLA 123 (136)
T ss_pred eCCCC---CCCceeEEEEECCccC---ChHHHHHHHHHh
Confidence 99998 6799999999999762 222334666543
No 160
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.52 E-value=2.1e-14 Score=139.59 Aligned_cols=106 Identities=24% Similarity=0.421 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..|.+||||++.+.. .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l-~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDL-AKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHh-CCCEEEEEEEe
Confidence 4689999999999999999889999999999942 47899999999999999999999876431 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.. +++++||++.+++.. .++....|+.+..
T Consensus 90 ~d~~---~~~~~lG~~~i~l~~---~~~~~~~W~~~l~ 121 (133)
T cd08384 90 KDIG---KSNDYIGGLQLGINA---KGERLRHWLDCLK 121 (133)
T ss_pred CCCC---CCccEEEEEEEecCC---CCchHHHHHHHHh
Confidence 9988 679999999999985 2333456887654
No 161
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.52 E-value=5.3e-14 Score=137.20 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=85.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--Ce---EEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--SK---WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~~---~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
.+.|.|+|++|++|+.+ |..|.+||||.+++. ++ ..||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 46899999999999875 778999999999963 33 3489999999999999999999874 3467999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.+++... +....+|++|..
T Consensus 91 d~d~~~-----------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT-----------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC-----------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 999876 588999999999984 344588998854
No 162
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.51 E-value=6.9e-14 Score=135.65 Aligned_cols=97 Identities=30% Similarity=0.438 Sum_probs=84.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEE
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-------GQRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELN 74 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~ 74 (1061)
..+.|.|+|++|++|+..+..|.+||||+|.+. ..+++|+++++++||+|||+|.|.+..... .....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 347899999999999999888999999999985 357899999999999999999999876321 114689999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECcccee
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
|||++.+ +++++||++.++|.++..
T Consensus 94 V~d~d~~---~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLL---GSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCC---CCCcEeEEEEEeHHHCCc
Confidence 9999998 679999999999999754
No 163
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=1.5e-13 Score=129.99 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=93.6
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 724 (1061)
|+|+|++|++|+.. +..|.+||||++.+++.. .+|+++.++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57999999999875 677899999999987644 699999999999999999999986 4588999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIE 774 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~ 774 (1061)
++++||++.+++.++..+.....|++|... |..+.|.+-
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 --------KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred --------CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 588999999999999988888899999643 222336654
No 164
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.51 E-value=1.7e-13 Score=130.20 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=88.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEec---CCcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~d~~~~~~ 722 (1061)
|+|+|++|+||+.. |.+||||+++++++. .+|+++++ .||.|||.|.|.+.. ....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999751 789999999999864 69999999 999999999999986 3367888888876543
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
.+.++|++.|.. +..+...+.||+|......+ +..|+|+|++.|
T Consensus 74 ----------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ----------CeeEEEEEEecC--cCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 466777766554 44455668999998765433 345999999876
No 165
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=1.6e-13 Score=133.12 Aligned_cols=104 Identities=26% Similarity=0.368 Sum_probs=89.0
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC--CcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i~v~d~ 717 (1061)
|.|+|+|++|++|+.. |..+.+||||.+.+.+ ...||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 5899999999999874 6778999999999753 456999999999999999999998753 47899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+..+ +|++||++.++|+++... ....||+|...+
T Consensus 90 ~~~~-----------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 90 DRTT-----------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCC-----------CcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 8765 588999999999999754 457899997554
No 166
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.50 E-value=4.6e-14 Score=137.68 Aligned_cols=105 Identities=26% Similarity=0.310 Sum_probs=87.0
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--C---eEEEecccCCCCCCccccEEEEEEecC---CcEEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--S---KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALG 713 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~---~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~ 713 (1061)
+..|.|+|+|++|++|+.+ |..|.+||||.+.++ + ...+|+++++++||.|||.|.|++... ...|.|+
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3468999999999999875 778899999999974 2 245899999999999999999998733 2479999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|||++..+ +|++||++.|++... +...++|+++...
T Consensus 89 v~d~~~~~-----------~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 89 VLDYDRIG-----------KNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred EEeCCCCC-----------CCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 99999876 588999999999875 3445888888643
No 167
>PLN03008 Phospholipase D delta
Probab=99.50 E-value=1.4e-13 Score=162.58 Aligned_cols=127 Identities=18% Similarity=0.297 Sum_probs=105.3
Q ss_pred CcEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEECCe-EEE
Q 001521 4 IQKLIVEVVDARNLLPKDG------------------------------------------HGTSSPYVVIDYYGQ-RRK 40 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~ 40 (1061)
.|.|.++|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3789999999999975221 347899999999875 569
Q ss_pred eeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCC-
Q 001521 41 THTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL- 119 (1061)
Q Consensus 41 T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~- 119 (1061)
|+++++++||+|||+|.|.+.... ..|.|+|||+|.+ + +++||++.|++.++. .+...+.|++|.+....
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~----s~L~f~VkD~D~~---g-aD~IG~a~IPL~~L~-~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPF----AYLEFQVKDDDVF---G-AQIIGTAKIPVRDIA-SGERISGWFPVLGASGKP 163 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCC----ceEEEEEEcCCcc---C-CceeEEEEEEHHHcC-CCCceEEEEEccccCCCC
Confidence 999999999999999999999854 6899999999999 3 689999999999964 45567789999875432
Q ss_pred CeeeeEEEEEEEEEeCCCCC
Q 001521 120 SWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 120 ~~~~G~l~l~~~~~~~~~~~ 139 (1061)
.+..|+|+++++|.+....+
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 34568999999999976654
No 168
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.50 E-value=3.2e-14 Score=138.70 Aligned_cols=106 Identities=26% Similarity=0.437 Sum_probs=87.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..|.+||||++.+. + .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEE
Confidence 357899999999999999999999999999983 2 36789999999999999999999875432 14679999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.. . +.....|+.|..
T Consensus 92 ~d~~---~~~~~iG~~~~~~~~-~--~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRV---TKNEVIGRLVLGPKA-S--GSGGHHWKEVCN 123 (136)
T ss_pred CCCC---CCCccEEEEEECCcC-C--CchHHHHHHHHh
Confidence 9998 679999999999987 2 333446887654
No 169
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.49 E-value=1.5e-13 Score=133.62 Aligned_cols=108 Identities=22% Similarity=0.397 Sum_probs=85.9
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-C----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-G----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
+..+.|.|+|++|+||...|..|.+||||++.+. + .+++|+++++++||.|||+|.|.+...... ...|.|+||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~ 89 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVY 89 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEE
Confidence 3568999999999999999999999999999972 2 467999999999999999999998654321 347999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
|+|.. +++++||++.+.... ..+.....|+.|..
T Consensus 90 d~d~~---~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~ 123 (135)
T cd08410 90 GHNVK---SSNDFIGRIVIGQYS--SGPSETNHWRRMLN 123 (135)
T ss_pred eCCCC---CCCcEEEEEEEcCcc--CCchHHHHHHHHHh
Confidence 99988 689999999876533 22222345766554
No 170
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=4.1e-13 Score=129.81 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=97.5
Q ss_pred cEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeEEEeeccCCCC-CCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 5 QKLIVEVVDARNLLPKD--GHGTSSPYVVIDYY------GQRRKTHTAVRDL-NPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~tl-nP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.... ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999887 57899999999993 4678999987775 9999999999998654 35799999
Q ss_pred eeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
||++.. ++++||++.+++.++. . +..|++|..........|.|.+.+++
T Consensus 79 ~d~~~~----~~~~iG~~~~~l~~l~-~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG----DDDFLGQACLPLDSLR-Q---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC----CCcEeEEEEEEhHHhc-C---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 999986 5899999999999973 2 34689998765544567999998875
No 171
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=9.3e-14 Score=135.54 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=84.9
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe--CCe---EEEecccCCCCCCccccEEEEEEec--C-CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY--ASK---WIRTRTVSDSLEPRWNEQYTWKVYD--P-CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~--~~~---~~rT~~~~~~~~P~wne~~~~~v~~--~-~~~l~i~v~ 715 (1061)
.|.|.|+|++|+||.++ |..|.+||||++.+ ++. ..||++++++.||.|||.|.|.+.. . ...|.|+||
T Consensus 14 ~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 14 ANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 57899999999999875 77889999999986 332 3589999999999999999999862 2 368999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ +|++||++.+++.+. +...++|+.+..
T Consensus 91 d~~~~~-----------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 91 DKDRLS-----------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred ECCCCC-----------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999876 588999999999987 333477877754
No 172
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=2e-14 Score=153.13 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=89.5
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEEC-----CeeeeeeeeecCCCCCcccceeEEeeccC-CCCeEEEEEEeccC-
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLG-----FQVQKTKVSVTRNGTPSWNEDLLFVAAEP-FTDQLSFTLENRQH- 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~d~- 563 (1061)
|+|+|.+|+||.+| |.+|.+||||++.|- ..+.||++++ .++||+|||+|.|.+... .+..|.|+|||||.
T Consensus 182 l~v~i~ea~NLiPM-DpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPM-DPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred EEEEehhhcccccc-CCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccccc
Confidence 99999999999999 999999999999993 3678899998 999999999999987533 35589999999999
Q ss_pred CCCceeEEEEEeccccccccccccccceEEEccc
Q 001521 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 564 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
++++++|...+.+++|.+. ..+.||.|.+
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLs 288 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLS 288 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhh
Confidence 9999999999999999864 4688999876
No 173
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.48 E-value=4.4e-14 Score=137.82 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=86.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..|.+||||++.+ ++ .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~-~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL-RETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh-CCCEEEEEEEE
Confidence 45899999999999999998999999999998 32 46799999999999999999999864321 13679999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.+. +.....|+.+..
T Consensus 92 ~~~~---~~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDRL---SRNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCCC---CCCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 9998 6799999999999874 333334665443
No 174
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.48 E-value=4.9e-13 Score=128.90 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-------------eEEEecccCCCCCCcc-ccEEEEEEecCCcEEE
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-------------KWIRTRTVSDSLEPRW-NEQYTWKVYDPCTVLA 711 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-------------~~~rT~~~~~~~~P~w-ne~~~~~v~~~~~~l~ 711 (1061)
...|.+++|++|. . |..|++||||.+.+.+ +..||+++++++||+| ||.|.|.+. ....|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 3578999999996 2 6789999999999742 3579999999999999 999999985 457899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc---EEeeEEeceecCCCCCccccEEEEEE
Q 001521 712 LGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK---VYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 712 i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
|+|||++..+. ...+++||++.|+++++..+. ....||+|..+...+.. .|+|.|.+
T Consensus 77 v~V~D~~~~~~--------~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v-~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKSR--------PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHV-SGQLTFRF 136 (137)
T ss_pred EEEEecCCCCC--------ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcE-EEEEEEEe
Confidence 99999765330 002789999999999997543 34678999876654443 39998875
No 175
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=1.8e-13 Score=132.85 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=81.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY---G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+..|.+||||++.+. + .+++|+++++++||+|||+|.|.+..... .+..|.|+||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l-~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL-SEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh-CccEEEEEEE
Confidence 468999999999999999999999999999983 2 35799999999999999999999976432 2578999999
Q ss_pred eCCCCCCCCCCceeEEEEEECcc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
|++.+ +++++||++.+++..
T Consensus 92 ~~~~~---~~~~~iG~v~l~~~~ 111 (138)
T cd08408 92 NKRKM---KRKEMIGWFSLGLNS 111 (138)
T ss_pred ECCCC---CCCcEEEEEEECCcC
Confidence 99998 689999999998875
No 176
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.47 E-value=1.2e-13 Score=134.39 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=84.5
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--Ce---EEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--SK---WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~~---~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
..|.|+|+|++|++|+++ |..|.+||||.+++. +. ..+|+++++++||.|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 12 TAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 468999999999999885 778999999999963 22 45899999999999999999998632 24699999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
||++..+ +|++||++.|++.....+ .++|+.+..
T Consensus 89 ~d~~~~~-----------~~~~IG~~~l~~~~~~~~--~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVG-----------HNELIGVCRVGPNADGQG--REHWNEMLA 122 (134)
T ss_pred EECCCCC-----------CCceeEEEEECCCCCCch--HHHHHHHHH
Confidence 9999876 588999999998854333 478887754
No 177
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.47 E-value=4.5e-13 Score=130.20 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=84.0
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-C-C---eEEEecccCCCCCCccccEEEEEEec--CC-cEEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-A-S---KWIRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALG 713 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-~-~---~~~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~ 713 (1061)
+..|.|.|+|++|++|+.+ |..|.+||||.+.+ . . ...+|+++++++||.|||.|.|.+.. .. ..|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 3468999999999999875 77889999999996 2 2 23589999999999999999999863 22 479999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|||++..+ +|++||++.|........ ..++|+.|...
T Consensus 88 V~d~d~~~-----------~~~~iG~~~l~~~~~~~~-~~~~W~~l~~~ 124 (135)
T cd08410 88 VYGHNVKS-----------SNDFIGRIVIGQYSSGPS-ETNHWRRMLNS 124 (135)
T ss_pred EEeCCCCC-----------CCcEEEEEEEcCccCCch-HHHHHHHHHhC
Confidence 99998765 689999999776554432 23678877543
No 178
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.47 E-value=6.7e-13 Score=127.08 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
.|+|+|++|+ |... +..+.+||||.++++++ ..+|+++++++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5442 55788999999999888 779999999999999999999985 4578999999999875
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCc---E--EeeEEeceecCCCCCccccEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGK---V--YRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
.|++||++.++|+++..+. . ...|+++......+.+..|.|.+.+
T Consensus 75 --------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 5899999999999986432 1 2358888755421223459888764
No 179
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.47 E-value=2.7e-13 Score=131.86 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|+|+|++|++|++++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+...... ...|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~-~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD-NVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC-CCEEEEEEEE
Confidence 468999999999999999999999999999983 2 367999999999999999999998654321 3579999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
++.. +++++||++.+++..
T Consensus 91 ~~~~---~~~~~IG~~~l~~~~ 109 (134)
T cd08403 91 YDRV---GHNELIGVCRVGPNA 109 (134)
T ss_pred CCCC---CCCceeEEEEECCCC
Confidence 9998 679999999999773
No 180
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=2.7e-13 Score=129.12 Aligned_cols=99 Identities=20% Similarity=0.330 Sum_probs=83.3
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC--
Q 001521 10 EVVDARNLLPKDGHGTSSPYVVIDYYGQ-------RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA-- 80 (1061)
Q Consensus 10 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~-- 80 (1061)
-.++|++|...+..|++||||++.+.+. .++|+++++++||.|||+|.|.+.... .+.|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 3588999999999999999999999664 489999999999999999999876444 4789999999997
Q ss_pred --CCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 81 --YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 81 --~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
. +++++||++.+++.+|.... ....|++|..
T Consensus 82 ~~~---~~~d~iG~~~i~l~~l~~~~-~~~~~~~l~~ 114 (120)
T cd04048 82 KDL---SDHDFLGEAECTLGEIVSSP-GQKLTLPLKG 114 (120)
T ss_pred CCC---CCCcEEEEEEEEHHHHhcCC-CcEEEEEccC
Confidence 6 57999999999999986543 3446888843
No 181
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.46 E-value=1.3e-13 Score=134.07 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=86.9
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
..|.|.|+|++|+||+++ |..|.+||||++.+.+ ...+|+++++++||.|||.|.|++... ...|.|+|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred CCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 468999999999999885 7788999999999743 245999999999999999999998743 36899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
||++..+ +|++||++.++++.. +....+||.+...
T Consensus 88 ~d~d~~~-----------~~~~lG~~~i~l~~~--~~~~~~W~~~l~~ 122 (133)
T cd08384 88 WDKDIGK-----------SNDYIGGLQLGINAK--GERLRHWLDCLKN 122 (133)
T ss_pred EeCCCCC-----------CccEEEEEEEecCCC--CchHHHHHHHHhC
Confidence 9998765 588999999999874 3344789987643
No 182
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=3.2e-13 Score=126.54 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=84.1
Q ss_pred CCCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcccCCCC
Q 001521 349 TKGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRD 427 (1061)
Q Consensus 349 ~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~~ 427 (1061)
|.+||||+|.+++ ...+|++++++.||+|||.|.|.+.+.. ...|.|.|+|++. + ++++||.+.++|.++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~- 84 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR-KSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDA- 84 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC-CCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhh-
Confidence 4789999999998 4679999999999999999999998876 7889999999987 6 899999999999999763
Q ss_pred CCCCCCCCeeEEccCCCccccceEEEEEEe
Q 001521 428 PPDSPLAPQWYRMEGGGAYSGDLMLATWVG 457 (1061)
Q Consensus 428 ~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~ 457 (1061)
.....+||+|.+. ..|+|.++..+.
T Consensus 85 ---~~~~~~w~~L~~~--~~G~i~~~~~~~ 109 (111)
T cd04052 85 ---TSVGQQWFPLSGN--GQGRIRISALWK 109 (111)
T ss_pred ---hhccceeEECCCC--CCCEEEEEEEEe
Confidence 3346799999873 459998876553
No 183
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.45 E-value=1.9e-13 Score=132.97 Aligned_cols=103 Identities=22% Similarity=0.317 Sum_probs=84.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec--CC-cEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~v~ 715 (1061)
.+.|.|+|++|+||.++ | .+.+||||.+.+.+ .+.||++++++.||.|||.|.|.+.. .. ..|.|+||
T Consensus 14 ~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 47899999999999885 6 67899999999543 24489999999999999999999962 22 68999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|.+..+ ++++||++.|+......+...++|+.+..
T Consensus 90 ~~~~~~-----------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 90 QSGGVR-----------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred eCCCCC-----------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 998765 58899999999776665655678887753
No 184
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.44 E-value=1.6e-12 Score=124.53 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=81.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEecC----CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYDP----CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~v 714 (1061)
.+.|+|+|++|++|++. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 46899999999999874 677899999999963 2356999999999999999999975432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEE
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTY 757 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 757 (1061)
||++..+ +++||++.++|+++..+.....++
T Consensus 91 ~d~~~~~------------~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRFG------------NDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCcC------------CeeEEEEEEEcccCCCCcceEeec
Confidence 9998763 789999999999999877444443
No 185
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.44 E-value=1.8e-12 Score=125.26 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=93.1
Q ss_pred EEEEEEEeecCCCCCcccC--CCCCCCcEEEEEe------CCeEEEecccCCCC-CCccccEEEEEEecCC-cEEEEEEE
Q 001521 646 TVELGVIGCKNLLPMKTVN--GKSTTDAYVVAKY------ASKWIRTRTVSDSL-EPRWNEQYTWKVYDPC-TVLALGVF 715 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d--~~g~~dpyv~~~~------~~~~~rT~~~~~~~-~P~wne~~~~~v~~~~-~~l~i~v~ 715 (1061)
.|+|+|++|++|+.+ + ..+.+||||++++ .....||+++.++. ||.|||.|.|.+..+. ..|.++||
T Consensus 3 ~l~v~vi~a~~L~~~---~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKP---KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCC---CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEE
Confidence 689999999999875 5 4778999999997 34567999988876 9999999999998665 67999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
|++.. +|++||++.++++++..+. .+++|........ ..|.|.+.+.+
T Consensus 80 d~~~~------------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSG------------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred eCCCC------------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 99865 2889999999999997765 5788876543322 23888887765
No 186
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.43 E-value=5e-13 Score=122.90 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCCCcEEEEEECC-----eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCC----CCC
Q 001521 337 LFVRVVKARFLPTKGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRG----DVA 407 (1061)
Q Consensus 337 L~V~v~~a~~L~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~----~~~ 407 (1061)
|.|.|++|+||++.+||||++.+++ .+++|+++++|+||+|||+|+|.+.. ...|.+.|||++.+ ...
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d~~ 77 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLDGE 77 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccccc
Confidence 5799999999999999999999864 36899999999999999999999874 67999999998310 014
Q ss_pred CCCCeeEEEEEECc
Q 001521 408 APPGFLGGICFDVT 421 (1061)
Q Consensus 408 ~~d~~lG~~~i~L~ 421 (1061)
+.|++||.+.+.|.
T Consensus 78 ~~d~~~G~g~i~Ld 91 (118)
T cd08686 78 GTDAIMGKGQIQLD 91 (118)
T ss_pred CcccEEEEEEEEEC
Confidence 68999988877764
No 187
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.43 E-value=1.6e-13 Score=133.56 Aligned_cols=92 Identities=26% Similarity=0.417 Sum_probs=79.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+ .+.+||||++.+.. .+++|+++++++||.|||+|.|.+...... ...|.|+|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~-~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD-TASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC-ccEEEEEEEe
Confidence 4588999999999999988 88899999999842 367999999999999999999999754421 4689999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
++.. +++++||++.+....
T Consensus 91 ~~~~---~~~~~lG~v~ig~~~ 109 (137)
T cd08409 91 SGGV---RKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCC---CCcceEEEEEECCcc
Confidence 9988 689999999998654
No 188
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.43 E-value=1.6e-12 Score=126.35 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=85.5
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC------eEEEecccCCCCCCccccEEEEEEec---CCcEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS------KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALG 713 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~------~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~ 713 (1061)
..++|.|+|++|+||.++ +..|.+||||++.+.+ .+.||++++++.||+|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred CCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 367999999999999885 7788999999999632 23599999999999999999999973 33689999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|||.+..+ ++++||++.+++.....++ .++|+.+..
T Consensus 90 V~~~~~~~-----------~~~~iG~v~l~~~~~~~~~-~~hW~~~l~ 125 (138)
T cd08408 90 VYNKRKMK-----------RKEMIGWFSLGLNSSGEEE-EEHWNEMKE 125 (138)
T ss_pred EEECCCCC-----------CCcEEEEEEECCcCCCchH-HHHHHHHHh
Confidence 99999865 5889999999988664322 267887753
No 189
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.5e-14 Score=144.85 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=164.1
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECC-----eeeeeeeeecCCCCCcccceeE--EeeccCC-CCeEEEEEEecc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF-----QVQKTKVSVTRNGTPSWNEDLL--FVAAEPF-TDQLSFTLENRQ 562 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~--f~v~~~~-~~~L~i~V~D~d 562 (1061)
+..+|..|++|.++ +.++..|||++..++. ...+|++.. +++||.|+|... +...++. ...+++.|.|.+
T Consensus 95 ~~~tl~~a~~lk~~-~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPM-DINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred cceeechhcccchh-hhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 89999999999999 9999999999999962 456777777 999999999754 3333332 347889999988
Q ss_pred C-CCCceeEEEEEeccccccccccccccceEEEcccC----CCccCCccceEEEEEEeeCCcccccCcccccCCCchhhh
Q 001521 563 H-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENT----NDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTAR 637 (1061)
Q Consensus 563 ~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~----~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~ 637 (1061)
. ...+++|+..+++..|...+. .....|+.-.-+ ...+.+..|.|.+++.+..
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s-------------------- 230 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERADRDEDEERGAILISLAYSS-------------------- 230 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCcccccccchhhccceeeeeccCc--------------------
Confidence 8 888999999988888765432 223344443322 1122356677777654321
Q ss_pred ccCCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe---E--EEecccCCCCCCccccEEEEEEecCC---cE
Q 001521 638 QLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK---W--IRTRTVSDSLEPRWNEQYTWKVYDPC---TV 709 (1061)
Q Consensus 638 ~~~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~---~--~rT~~~~~~~~P~wne~~~~~v~~~~---~~ 709 (1061)
...-|.|++++|..|..+ |.+|.+||||..++... . -+|.+.+++++|.||+.|.|.+...+ ..
T Consensus 231 -----~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 -----TTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred -----CCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 234688999999999987 99999999999995432 2 28999999999999999999987433 67
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEe
Q 001521 710 LALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYP 758 (1061)
Q Consensus 710 l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 758 (1061)
+.|.|+|++...+ .+++|-+...+. ..+....+|+.
T Consensus 303 v~lsvgd~~~G~s-----------~d~~GG~~~g~~--rr~~v~~h~gr 338 (362)
T KOG1013|consen 303 VALSVGDYDIGKS-----------NDSIGGSMLGGY--RRGEVHKHWGR 338 (362)
T ss_pred EEEeecccCCCcC-----------ccCCCccccccc--ccchhhcCccc
Confidence 9999999887542 558887765433 33444455554
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.43 E-value=7.2e-13 Score=121.88 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=68.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC---
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD--- 78 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~--- 78 (1061)
|.|+|++|+||+ +.+||||++.++. .+++|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999994 5699999999853 46999999999999999999999974 37899999998
Q ss_pred ----CCCCCCCCCceeEEEEEECcc
Q 001521 79 ----KAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 ----d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
|.. ++|+.+|.+.+.|+.
T Consensus 71 ~~~~d~~---~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE---GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc---CcccEEEEEEEEECH
Confidence 455 579999998888764
No 191
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=2.2e-13 Score=132.87 Aligned_cols=107 Identities=30% Similarity=0.491 Sum_probs=90.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+..... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEe
Confidence 4689999999999999998889999999999854 36799999999999999999999876531 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 116 (1061)
.+.. +++++||++.+++.+ .+.....|++|...
T Consensus 91 ~~~~---~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSV---GRNEVIGQVVLGPDS---GGEELEHWNEMLAS 123 (134)
T ss_pred cCCC---CCCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence 9987 579999999999998 33344579887764
No 192
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.42 E-value=9.3e-13 Score=124.82 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred CceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---C--eeeeeeeeecCCC-CCcccceeEEeeccCCCC-eEEEEE
Q 001521 486 PKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG---F--QVQKTKVSVTRNG-TPSWNEDLLFVAAEPFTD-QLSFTL 558 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~-nP~wne~f~f~v~~~~~~-~L~i~V 558 (1061)
|..+.|+|+|++|+||+++ +..+.+||||+|.+- . .+.||++++ +++ ||+|||+|.|++..+..+ .|.|+|
T Consensus 11 p~~~rLtV~VikarnL~~~-~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSS-STPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred CcCCeEEEEEEEccCCCcc-cCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3344599999999999998 777778999999983 2 466777777 774 699999999999765433 788889
Q ss_pred EeccC-CCCceeEEEEEecccc
Q 001521 559 ENRQH-KGSVALGVTRVPLTAV 579 (1061)
Q Consensus 559 ~D~d~-~~d~~lG~~~i~l~~l 579 (1061)
||++. +++++||++.+.....
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EeCCCCcCCceEEEEEECCccC
Confidence 99987 8999999999999764
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.42 E-value=6.6e-13 Score=126.48 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=82.5
Q ss_pred EEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-------EEecccCCCCCCccccEEEEEEe-cCCcEEEEEEEeCCC--
Q 001521 650 GVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-------IRTRTVSDSLEPRWNEQYTWKVY-DPCTVLALGVFDSWG-- 719 (1061)
Q Consensus 650 ~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-------~rT~~~~~~~~P~wne~~~~~v~-~~~~~l~i~v~d~~~-- 719 (1061)
-.++|++|++. |..|.+||||++++.+.. .||+++++++||.|||.|.|.+. +....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 35889999874 778999999999976542 69999999999999999999865 455789999999997
Q ss_pred --CCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 720 --IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 720 --~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.+ +|++||++.+++++|..+.....+++|..
T Consensus 82 ~~~~-----------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS-----------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 44 58899999999999987665577888843
No 194
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.42 E-value=1.2e-12 Score=125.05 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECCee--eeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCCc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQV--QKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGSV 567 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d~ 567 (1061)
|+|.|++|++|+.+ |..+.+||||++.++++. .||++++ ++.||.|||.|.|.+..+....|.|+|||++. ++++
T Consensus 2 lrV~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 2 VRVYVVRARNLQPK-DPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred EEEEEEECcCCCCC-CCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 79999999999998 888999999999998755 4677777 89999999999999877777899999999998 8999
Q ss_pred eeEEEEEeccccc
Q 001521 568 ALGVTRVPLTAVE 580 (1061)
Q Consensus 568 ~lG~~~i~l~~l~ 580 (1061)
+||++.+++.+..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999999765
No 195
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.42 E-value=5.3e-13 Score=130.12 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=87.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-----EEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-----WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-----~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.|.|.|.|++|++|+.. |..+.+||||.+.+.+. ..+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 47899999999999874 77889999999996542 34899999999999999999998754 478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|.+..+ ++++||++.+++++ .+...++|++|...
T Consensus 90 d~~~~~-----------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG-----------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC-----------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998765 58899999999999 44445889998654
No 196
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.41 E-value=1.5e-12 Score=124.79 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=81.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|+|+|++|++|+..+..+.+||||++.+. ...++|+++++++||.|||+|.|.........+..|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 457899999999999999888999999999983 247899999999999999999996433221124689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceec
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
++.+ ++++||++.+++.+|...
T Consensus 93 ~~~~----~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF----GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc----CCeeEEEEEEEcccCCCC
Confidence 9987 388999999999997643
No 197
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.41 E-value=6.1e-13 Score=171.72 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=102.6
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCC--cEEEEEEEeCC
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPC--TVLALGVFDSW 718 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~--~~l~i~v~d~~ 718 (1061)
-..|.|.|+|++|.+|. +..|++||||++.+|+. +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 44799999999999994 34689999999999965 779999999999999999999999876 78999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccE---EEEEEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGE---IEVAVRFI 780 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~---i~l~~~f~ 780 (1061)
.++ ++.||++.|++.++..+..++.||+|..+ | ++.|+ |++++.|+
T Consensus 2052 ~f~------------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG------------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC------------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 885 44999999999999999999999999742 2 23477 88888885
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.40 E-value=6.2e-13 Score=171.67 Aligned_cols=119 Identities=17% Similarity=0.361 Sum_probs=100.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
-|.|.|+|++|+||. +..|.+||||++.++++ ++||++++++.||+|||+|.|.+.+++. +..|+|+|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF- 2053 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc-
Confidence 389999999999997 44789999999999965 8899999999999999999999988764 57799999999999
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeE---EEEEEEEEe
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGE---VGLKIYYVD 134 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~~ 134 (1061)
+ ++.||.+.+++.++...+. ...||+|.+++ ...|. |++++.|.+
T Consensus 2054 --~-kd~~G~~~i~l~~vv~~~~-~~~~~~L~~~~---~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 --G-KSSLGKVTIQIDRVVMEGT-YSGEYSLNPES---NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred --C-CCCCceEEEEHHHHhcCce-eeeeeecCccc---ccCCCcceEEEEEEecC
Confidence 3 4589999999999876554 45799998643 23676 999999864
No 199
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.7e-13 Score=147.53 Aligned_cols=124 Identities=27% Similarity=0.471 Sum_probs=107.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC-
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP- 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~- 83 (1061)
..+.++|++|.+|.++|..|++||||.+.++..+.||++|...+||+|||.|+|..++.. .++.+.|||+|....
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHH
Confidence 467899999999999999999999999999999999999999999999999999999975 789999999886410
Q ss_pred -------CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 84 -------TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 -------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
...|||||+..|.+..|- .+.+.||.|+++...+.+.|-|++.|...-.
T Consensus 371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 135899999999988752 2346799999998889999988888776553
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.34 E-value=4.1e-12 Score=119.05 Aligned_cols=90 Identities=17% Similarity=0.335 Sum_probs=75.1
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCC
Q 001521 9 VEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAY 81 (1061)
Q Consensus 9 V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~ 81 (1061)
+-.++|++|+..|..|++||||++.+.+ ..++|+++++++||.|| +|.|.+..... .....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3466999999999999999999999854 35899999999999999 68887643221 1147899999999998
Q ss_pred CCCCCCceeEEEEEECcccee
Q 001521 82 GPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 82 ~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
++|++||++.+++.+|..
T Consensus 83 ---~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 ---GKHDLIGEFETTLDELLK 100 (110)
T ss_pred ---CCCcEEEEEEEEHHHHhc
Confidence 689999999999999863
No 201
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2e-12 Score=134.71 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=150.2
Q ss_pred ccEEEEEEEEeecCCC-----CCCcEEEEEECC-----eeeeeccccCCCCceeeeEEEEe--ccCCCCCCeEEEEEEcC
Q 001521 334 MHYLFVRVVKARFLPT-----KGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFG--RDSPESSSFLEVSVWDP 401 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-----~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~--v~~~~~~~~L~i~V~d~ 401 (1061)
...+.+++.+|++|.. ..||||+..++. .+++|++..+++||.|+|+-.+. ..+......+.+.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 4467889999999875 889999999865 46889999999999999976554 33322156778889998
Q ss_pred CCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC--------CccccceEEEEEEeccCCCCCCCccccCCC
Q 001521 402 PRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG--------GAYSGDLMLATWVGTQADDSFPDAWKTDTA 473 (1061)
Q Consensus 402 d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~--------~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~ 473 (1061)
+. +..++++|+..+.|..+..++. .....|+.-+-. -..+|.|.+++-+
T Consensus 172 ~~---~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~----------------- 228 (362)
T KOG1013|consen 172 DK---KTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAY----------------- 228 (362)
T ss_pred cc---cccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeecc-----------------
Confidence 87 7889999999999888776421 222333322111 0233444443221
Q ss_pred CCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---C--eeeeeeeeecCCCCCcccceeEEeecc
Q 001521 474 GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG---F--QVQKTKVSVTRNGTPSWNEDLLFVAAE 548 (1061)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~nP~wne~f~f~v~~ 548 (1061)
.....-|.|++++|.+|..+ |+++.+||||+..+. + .+.||.+.+ ++.||.|++.|.|.+..
T Consensus 229 -----------~s~~~~l~vt~iRc~~l~ss-Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 229 -----------SSTTPGLIVTIIRCSHLASS-DSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KTLNPEFDEEFFYDIGP 295 (362)
T ss_pred -----------CcCCCceEEEEEEeeeeecc-ccCCCCCccceeecCCCcchhhcccCcchh-ccCCccccccccccCCc
Confidence 11122389999999999999 999999999999984 2 345666666 99999999999988743
Q ss_pred CC--CCeEEEEEEeccC-CCCceeEEEEEecc
Q 001521 549 PF--TDQLSFTLENRQH-KGSVALGVTRVPLT 577 (1061)
Q Consensus 549 ~~--~~~L~i~V~D~d~-~~d~~lG~~~i~l~ 577 (1061)
-. ...+.|.|+|++. +..+++|-+..-+.
T Consensus 296 gdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cchhcceEEEeecccCCCcCccCCCccccccc
Confidence 22 3479999999988 68888887665443
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.31 E-value=8.7e-12 Score=110.74 Aligned_cols=82 Identities=30% Similarity=0.667 Sum_probs=74.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|+|+|++|+||...+..+.+||||++.+++ ..++|+++.++.+|.|+|+|.|.+.... ...|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~-- 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSF-- 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSS--
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCC--
Confidence 789999999999988888999999999977 6799999999999999999999987776 35699999999999
Q ss_pred CCCCceeEEEE
Q 001521 84 TTRNNFLGRIR 94 (1061)
Q Consensus 84 ~~~d~~lG~~~ 94 (1061)
++|++||++.
T Consensus 76 -~~~~~iG~~~ 85 (85)
T PF00168_consen 76 -GKDELIGEVK 85 (85)
T ss_dssp -SSEEEEEEEE
T ss_pred -CCCCEEEEEC
Confidence 6799999974
No 203
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.29 E-value=4e-11 Score=136.99 Aligned_cols=180 Identities=17% Similarity=0.277 Sum_probs=123.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH---HHhhhccccCCchhhHHHHHHHHHHHHcChhh-H-HHHHHHHHHHHhhccc
Q 001521 847 HAFSMRKVRANWFRIINVLAGVIDIL---RWADDTRSWKNPTATILVHALLVMLVWFPDLI-V-PTLAFYVFVIGVWNYR 921 (1061)
Q Consensus 847 ~~fs~~~~~~N~~Rl~~~~~~~~~~~---~~i~~l~~W~~P~~T~~~~~~~~~~~~~p~l~-~-p~~~~~l~~~~~~~~~ 921 (1061)
+.+|++++.+|+.||.+.+..++.++ +.+.++++|++|..|+.++++|+++|++|.+. + ..+++.++++++..|.
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl 80 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYL 80 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999998884 2 2233334444444544
Q ss_pred ccC-CCCCCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccC
Q 001521 922 FRK-RDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQA----LVTW 996 (1061)
Q Consensus 922 ~~~-~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va~~~E~~~n----l~~w 996 (1061)
.+. .+.. .... +..+.+.+....|+-.++ -.++...+..+||.|+.+.+.++.+.. .++|
T Consensus 81 ~~~p~~~~-~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f 145 (359)
T PF06398_consen 81 YRHPSPTS-SLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNF 145 (359)
T ss_pred eecCCCcc-cccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 432 1111 0000 000001111111111101 234445555899999999988888874 4579
Q ss_pred CChhHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHhh-hcCCcccCC
Q 001521 997 RDPRATGIFVGLCFVVAMIL----YLVPSKMVAMAFGFYY-LRHPMFRDR 1041 (1061)
Q Consensus 997 ~~P~~t~~~~~~l~~~~~vl----~~iP~r~i~l~~g~~~-l~~P~~~~~ 1041 (1061)
+++..|.+++.+|+++.+.+ .+||+|++++++|..+ +.||..++.
T Consensus 146 ~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 146 SDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 99999998888777666644 4689999999999443 789987754
No 204
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.3e-11 Score=115.60 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=73.6
Q ss_pred EEEEeecCCCCCcccCCCCCCCcEEEEEeCCe------EEEecccCCCCCCccccEEEEEEec-----CCcEEEEEEEeC
Q 001521 649 LGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK------WIRTRTVSDSLEPRWNEQYTWKVYD-----PCTVLALGVFDS 717 (1061)
Q Consensus 649 v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~------~~rT~~~~~~~~P~wne~~~~~v~~-----~~~~l~i~v~d~ 717 (1061)
+-.++|++|+.+ |..|.+||||++++.+. ..+|+++++++||.|| .|.|++.+ ....|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345689999875 88899999999996443 3699999999999999 68887643 357999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
+..+ +|++||++.+++++|...+
T Consensus 80 d~~~-----------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG-----------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCC
Confidence 9876 5899999999999998555
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.1e-11 Score=133.03 Aligned_cols=131 Identities=21% Similarity=0.327 Sum_probs=104.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
...+.++|+-|+||.+ +|..|++||||.+..|..+.||+++..++||+|||.|.|...+....|.+.|||+|..-..
T Consensus 294 sakitltvlcaqgl~a---kdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeeccccee---cccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 3578899999999987 6999999999999999999999999999999999999999999999999999999864310
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
.---+.....|+|||+..|-+..+... .+.||.|..+..+... +|.|+|.+..+
T Consensus 371 klrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksav-sgairlhisve 424 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSAV-SGAIRLHISVE 424 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhhc-cceEEEEEEEE
Confidence 000011334699999999999998643 3789999877554433 48887655543
No 206
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.17 E-value=5.5e-10 Score=126.26 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=156.4
Q ss_pred eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-----CCCceeEEEEEeccccccccccccccceEEEcc
Q 001521 522 QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-----KGSVALGVTRVPLTAVERRVDDRKVASRWFTFE 596 (1061)
Q Consensus 522 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 596 (1061)
+..+|..+. +.+||.|.+.|.+.......+.|++.++|.+. ...+++|++.+.++++...... ..-+.++
T Consensus 41 e~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLLLK 115 (529)
T ss_pred cccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhhcc
Confidence 455888888 99999999999888877888899999999875 5788999999999998743211 0111222
Q ss_pred cCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEE
Q 001521 597 NTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK 676 (1061)
Q Consensus 597 ~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~ 676 (1061)
. ......|.|.+.+.-.... + ....-.++|.+|.+ +|..+++|||..++
T Consensus 116 ~---~~~~~~g~iti~aee~~~~-----------~--------------~~~~~~~~~~~ld~---kd~f~ksd~~l~~~ 164 (529)
T KOG1327|consen 116 P---GKNAGSGTITISAEEDESD-----------N--------------DVVQFSFRAKNLDP---KDFFSKSDPYLEFY 164 (529)
T ss_pred c---CccCCcccEEEEeeccccc-----------C--------------ceeeeeeeeeecCc---ccccccCCcceEEE
Confidence 1 1223456666654321100 0 11112344788844 79999999999887
Q ss_pred --e-CCeEE---EecccCCCCCCccccEEEEEEe-----cCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcc
Q 001521 677 --Y-ASKWI---RTRTVSDSLEPRWNEQYTWKVY-----DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIS 745 (1061)
Q Consensus 677 --~-~~~~~---rT~~~~~~~~P~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~ 745 (1061)
+ .+.+. +|.+++++++|.|- .|.++.. ++...+.|.|||++..+ ++++||++..+++
T Consensus 165 ~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----------~~~~ig~~~tt~~ 232 (529)
T KOG1327|consen 165 KRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG-----------KHDLIGKFQTTLS 232 (529)
T ss_pred EecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC-----------CcCceeEecccHH
Confidence 3 33443 99999999999994 4555543 45588999999999876 6899999999999
Q ss_pred cccC-Cc--EEeeEEeceecCCCCCccccEEEE-------------------EEEEEecCCchhhhhhcCCCCCC-Cccc
Q 001521 746 TLET-GK--VYRNTYPLLLLGSNGMTKMGEIEV-------------------AVRFIRTSPTLDFLHVYSQPLLP-LMHH 802 (1061)
Q Consensus 746 ~l~~-~~--~~~~~~~L~~~~~~~~~~~G~i~l-------------------~~~f~~~~~~~~~~~~~~~p~~p-~~~~ 802 (1061)
++.. +. .+....|-...+.+..+..|.+.+ .+.|+-. +++.+++..|..| ..||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vg---IDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 233 ELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVG---IDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HhcccCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEE---EEEeccCCCCCCCCccee
Confidence 9963 11 112222222111112222366543 2223222 5677777788776 5699
Q ss_pred cCCccHHHHH
Q 001521 803 IKPLGMVQQE 812 (1061)
Q Consensus 803 ~~p~~~~~~~ 812 (1061)
++|-..++-+
T Consensus 310 i~p~~~N~Y~ 319 (529)
T KOG1327|consen 310 IDPHQPNPYE 319 (529)
T ss_pred cCCCCCCHHH
Confidence 9997776643
No 207
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.15 E-value=1.6e-10 Score=102.53 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=73.0
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECC---eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCC
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF---QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGS 566 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d 566 (1061)
|+|+|++|+||+.. +..+.+||||++.+++ ...+|+++. ++.+|.|+|.|.|.+..+..+.|.|+|||++. +++
T Consensus 1 L~v~I~~a~~L~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~ 78 (85)
T PF00168_consen 1 LTVTIHSARNLPSK-DSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD 78 (85)
T ss_dssp EEEEEEEEESSSSS-STTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred CEEEEEEEECCCCc-ccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence 78999999999988 7788999999999975 568999888 88999999999999887877789999999998 779
Q ss_pred ceeEEEE
Q 001521 567 VALGVTR 573 (1061)
Q Consensus 567 ~~lG~~~ 573 (1061)
++||++.
T Consensus 79 ~~iG~~~ 85 (85)
T PF00168_consen 79 ELIGEVK 85 (85)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
Confidence 9999873
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.11 E-value=4.6e-10 Score=102.64 Aligned_cols=101 Identities=37% Similarity=0.718 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|......+.++|||.+.+.+ ..++|.++.++.||.|+|.|.|.+.... ...|.|+|||.+.. +
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~---~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRF---S 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCC---C
Confidence 579999999998877778999999999988 8999999999999999999999998843 47899999999988 4
Q ss_pred CCceeEEEEEECccceecCceeeEEEec
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
++.++|.+.+++.++.........|++|
T Consensus 75 ~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999976233445568764
No 209
>PLN02270 phospholipase D alpha
Probab=99.09 E-value=8e-10 Score=131.33 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=106.5
Q ss_pred ceEEEEEEEeecCCCCCcc---------------cCCCCCCCcEEEEEeCCeEE-EecccCCC-CCCccccEEEEEEecC
Q 001521 644 VGTVELGVIGCKNLLPMKT---------------VNGKSTTDAYVVAKYASKWI-RTRTVSDS-LEPRWNEQYTWKVYDP 706 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~---------------~d~~g~~dpyv~~~~~~~~~-rT~~~~~~-~~P~wne~~~~~v~~~ 706 (1061)
-|.|.|+|++|++|+.++. ....+.|||||.|.+++.++ ||+++.+. .||.|||.|.+++.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3889999999999975310 11246789999999999988 99999885 6999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 707 ~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
.+.++|+|.|.+.++ ..+||++.||+.+|..|...+.|+++.....+-.+....|+++++|+.-
T Consensus 87 ~~~v~f~vkd~~~~g------------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG------------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC------------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999987 5599999999999999998899999987654333332479999999864
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=99.08 E-value=9.2e-10 Score=125.87 Aligned_cols=118 Identities=18% Similarity=0.283 Sum_probs=92.2
Q ss_pred cEEEEEEEEeeCCCC-----CCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 5 QKLIVEVVDARNLLP-----KDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~-----~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
..|.|+|+.|.++.. .+.....||||+|.+.| .+++|++..|+.||.|||+|.|.+..++. ..|+|+
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEEE
Confidence 579999999998741 12245679999999954 46788888889999999999999998873 579999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|+|.. .+|+|+|+..+|+..|.. +.++++|..+....-..-.|.+++.|
T Consensus 486 V~D~D~~---~~ddfiGQ~~LPv~~Lr~----GyR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEVS---TADAFCGQTCLPVSELIE----GIRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCCC---CCCcEEEEEecchHHhcC----CceeEeccCCCcCCCCCceEEEEEEe
Confidence 9999987 579999999999999632 45688888755333234566666665
No 211
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.06 E-value=2.7e-11 Score=136.60 Aligned_cols=129 Identities=27% Similarity=0.502 Sum_probs=107.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--------------------------C-----eEEEeeccCCCCCCeeec
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY--------------------------G-----QRRKTHTAVRDLNPTWNE 54 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--------------------------~-----~~~~T~~~~~tlnP~W~e 54 (1061)
.|.|.+.+|+||.++|.+|.+|||+...+- | -.+-|.+.++|+||.|+|
T Consensus 115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E 194 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence 455777899999999999999999998760 1 013488899999999999
Q ss_pred eeEEeecCCCCCCCCeEEEEEeeCCCCCC------------------------------CCC---CceeEEEEEECccce
Q 001521 55 ALEFNVGKPPQVFTDMFELNIFHDKAYGP------------------------------TTR---NNFLGRIRLSSSQFV 101 (1061)
Q Consensus 55 ~f~f~v~~~~~~~~~~L~v~v~d~d~~~~------------------------------~~~---d~~lG~~~v~l~~l~ 101 (1061)
.|.|.+.+.. ...+++-+||+|.-.+ ++. |||||++.+++.++.
T Consensus 195 kF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 195 KFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred heeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 9999999987 6789999999986522 234 899999999999986
Q ss_pred ecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCC
Q 001521 102 KKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 102 ~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~ 139 (1061)
..| .++||.|++++..++++|.+++.+.+.......
T Consensus 272 ~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 272 PDG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred cch--HHHHhccCcccccccccceEEEEEEEeeecccc
Confidence 655 357999999999999999999999998865543
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.02 E-value=1.1e-09 Score=103.94 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=77.9
Q ss_pred EEEEEEEeeCCCCCCC--CC--CCCcEEEEEECC---eEEEeeccCCCCC--CeeeceeEEeecCCC-------------
Q 001521 7 LIVEVVDARNLLPKDG--HG--TSSPYVVIDYYG---QRRKTHTAVRDLN--PTWNEALEFNVGKPP------------- 64 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~--~g--~~dPyv~v~~~~---~~~~T~~~~~tln--P~W~e~f~f~v~~~~------------- 64 (1061)
|+|.|.+|+++...+. .| ++||||++.+.+ .+++|.+..+++| |.||+.|.|.+.-..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 8999999999654433 55 599999999964 6799999999999 999999999876521
Q ss_pred -------CCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceec
Q 001521 65 -------QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 65 -------~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
......|.++|||.|.+ ++|++||++.++|..+.+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~---s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKF---SPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECccc---CCCCcceEEEEEhhhcccc
Confidence 11257899999999999 6899999999999986543
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.02 E-value=2e-09 Score=98.57 Aligned_cols=91 Identities=34% Similarity=0.708 Sum_probs=80.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ---RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|......+..+|||++.+.+. .++|+++.++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~- 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF- 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCc-
Confidence 47899999999988776678999999999764 899999999999999999999998875 48899999999987
Q ss_pred CCCCCceeEEEEEECcccee
Q 001521 83 PTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~ 102 (1061)
+.+.++|.+.+++.++..
T Consensus 77 --~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 --GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred --cCCceeEEEEEEHHHccc
Confidence 468999999999988654
No 214
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.99 E-value=2.7e-09 Score=97.43 Aligned_cols=99 Identities=29% Similarity=0.462 Sum_probs=84.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|.|++|++|... ...+..+|||.+.+.+ ...+|.++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 47899999999763 4566899999999888 78899999999999999999999997 6788999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEccccc-CCcEEeeEEec
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLE-TGKVYRNTYPL 759 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 759 (1061)
.+.+||++.+++..+. .+.....|++|
T Consensus 75 --------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 4789999999999997 44444667664
No 215
>PLN02270 phospholipase D alpha
Probab=98.98 E-value=3.8e-09 Score=125.66 Aligned_cols=127 Identities=17% Similarity=0.311 Sum_probs=103.9
Q ss_pred CcEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECC-eEEEeeccCCC-CCCeeeceeEEeecCC
Q 001521 4 IQKLIVEVVDARNLLPKD------------------GHGTSSPYVVIDYYG-QRRKTHTAVRD-LNPTWNEALEFNVGKP 63 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~-~~~~T~~~~~t-lnP~W~e~f~f~v~~~ 63 (1061)
.|.|.|+|.+|++|+..+ ..+++||||+|.+++ ...||+++.+. .||.|+|+|++.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 488999999999997531 136789999999988 67899999885 6999999999999987
Q ss_pred CCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCe-eeeEEEEEEEEEeCCCCC
Q 001521 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW-IQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 64 ~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~~~~~~~ 139 (1061)
. ..+.|.|.|.|.++ ..+||.+.+|+.+++. ++..+.||++.....+.. ..-+|+++++|++....+
T Consensus 87 ~----~~v~f~vkd~~~~g----~~~ig~~~~p~~~~~~-g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 87 A----SNIIFTVKDDNPIG----ATLIGRAYIPVEEILD-GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred c----ceEEEEEecCCccC----ceEEEEEEEEHHHhcC-CCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 6 78999999999993 5699999999999765 455778999877543322 334999999999965543
No 216
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.95 E-value=3.9e-09 Score=100.29 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=75.4
Q ss_pred EEEEEEEeecCCC---------CCCcEEEEEECC---eeeeeccccCCCC--ceeeeEEEEeccC---------------
Q 001521 337 LFVRVVKARFLPT---------KGSPVVKIAVAN---SRVESKPARRTSC--FEWDQTFAFGRDS--------------- 387 (1061)
Q Consensus 337 L~V~v~~a~~L~~---------~~dPyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 387 (1061)
|+|.|.+|+|++. .+||||++.+.+ .+++|.+.++++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 499999999976 5789999999999 9999999988655
Q ss_pred --------CCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcccCCC
Q 001521 388 --------PESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLR 426 (1061)
Q Consensus 388 --------~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~ 426 (1061)
.. ...|.|+|||.|. ++.|++||++.++|..+...
T Consensus 82 ~~~~~~e~~~-~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKI-PPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEec-CcEEEEEEEECcc---cCCCCcceEEEEEhhhcccc
Confidence 22 6899999999998 78999999999999988873
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.94 E-value=8.6e-09 Score=120.77 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=90.9
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPK------DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.|.+|... +.....||||+|.+-| .+++|+++.++.||.|||+|.|.+..++. ..|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL---Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL---ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc---cEEE
Confidence 46799999999887421 1123359999999843 67899999999999999999999998763 5799
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|||+|.. ++++|+|+..+|+..|.. +.+|++|..+....-..-.|.+++.|
T Consensus 546 f~V~D~D~~---~~ddfiGq~~lPv~~Lr~----GyR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 546 IEVREYDMS---EKDDFGGQTCLPVSELRP----GIRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEecCCC---CCCCeEEEEEcchhHhcC----CceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999999988 579999999999999643 45699998654332223355555544
No 218
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.93 E-value=6.5e-09 Score=95.09 Aligned_cols=91 Identities=30% Similarity=0.474 Sum_probs=78.7
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe---EEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK---WIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~---~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 722 (1061)
|.|.|+.|++|... +..+..+|||.+++++. ..+|+++.++.||.||+.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67999999999763 33457899999998775 67999999999999999999999987 799999999998764
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
.+.+||.+.+++.++..+.
T Consensus 78 ----------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----------CCceeEEEEEEHHHcccCc
Confidence 4889999999999987655
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=98.90 E-value=1.4e-08 Score=116.41 Aligned_cols=120 Identities=21% Similarity=0.321 Sum_probs=90.5
Q ss_pred ceEEEEEEEeecCCCC-C-cccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLP-M-KTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~-~-~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~ 715 (1061)
...|.|+|+++++++. . +..+.....||||.|.+.| ...+|.+..++.||.|||.|.|++..|. ..|.|.|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999999852 1 1112334679999999544 2347877778999999999999999877 78999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|+|... .|+|||+..+|++.|..|- +..||..+..... ....|-++|+
T Consensus 488 D~D~~~-----------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l---~~~~Ll~~f~ 535 (537)
T PLN02223 488 DYEVST-----------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKAC---SSTMLLTRFK 535 (537)
T ss_pred ecCCCC-----------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCC---CCceEEEEEE
Confidence 999765 5889999999999999987 5678876543222 2245555554
No 220
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=1.7e-08 Score=118.13 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=92.0
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPK------DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.+.++... +.....||||+|.+-| .+++|++..++.||.|||+|.|.+..+++ ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEE
Confidence 36799999999986421 2233579999999943 56799999999999999999999998774 6899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|+|+|.. .+|+|+|+..+|+..|. . +.+.++|..+....-..-.|.+++.+
T Consensus 545 f~V~d~d~~---~~ddfiGQ~~lPv~~Lr-~---GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDIN---EKDDFGGQTCLPVSEIR-Q---GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCC---CCCCEEEEEEcchHHhh-C---ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999987 57999999999999963 2 45678887765333233466666655
No 221
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-08 Score=117.87 Aligned_cols=119 Identities=21% Similarity=0.414 Sum_probs=95.0
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECC-----eEEEee-ccCCCCCCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 6 KLIVEVVDARNLLPKDG----HGTSSPYVVIDYYG-----QRRKTH-TAVRDLNPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~----~g~~dPyv~v~~~~-----~~~~T~-~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
.|.|+|..+.++.+.-. +..+||||.|.+-| ...+|+ +..|+-||.|+|+|+|.+..+++ .-|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 69999999997654432 35789999999955 578999 55778999999999999999885 6799999
Q ss_pred eeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
+|+|.. ++|||+|+..+|+..|. . +.+-++|..+....-..-.|.+++.+.+
T Consensus 694 ~d~d~~---~~ddF~GQ~tlP~~~L~-~---GyRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 694 HDYDYI---GKDDFIGQTTLPVSELR-Q---GYRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EecCCC---CcccccceeeccHHHhh-C---ceeeeeecCCCCccccceeEEEEEEEec
Confidence 999998 68999999999999963 2 4556888876444445567777777653
No 222
>PLN02952 phosphoinositide phospholipase C
Probab=98.81 E-value=4.8e-08 Score=114.66 Aligned_cols=120 Identities=22% Similarity=0.252 Sum_probs=92.5
Q ss_pred ceEEEEEEEeecCCCCCc---ccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMK---TVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~---~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.|++|+.-. ..|.....||||.|...+ ...+|+++.++.||.|||.|.|++..+. ..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999999985311 112223459999999543 4559999999999999999999998775 7899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|+|..+ .|+++|+..+|++.|..|. +++||.... |. ..+...|-++|.
T Consensus 549 ~D~D~~~-----------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE-----------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC-----------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998865 5889999999999999988 488996543 32 236667777764
No 223
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.80 E-value=3.7e-08 Score=115.17 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=91.2
Q ss_pred CcEEEEEEEEeeCCC---CC---CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLL---PK---DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~---~~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.+.++. +. +.....||||+|.+.| .+++|+++.++.||.|||+|.|.+..++. ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL---AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL---ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce---eEEE
Confidence 457999999998752 11 1234579999999943 57899999999999999999999988763 6799
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|.|||+|.. ..|+|+|+..+|+..|. . +.+.++|..+....-..-.|.+++.+
T Consensus 528 f~V~d~D~~---~~ddfigq~~lPv~~Lr-~---GyR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMS---EKDDFGGQTCLPVWELS-Q---GIRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCC---CCCcEEEEEEcchhhhh-C---ccceEEccCCCcCCCCCeeEEEEEEe
Confidence 999999987 57999999999999963 2 45678887754332233466666654
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.79 E-value=1.5e-08 Score=89.77 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=71.7
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 7 LIVEVVDARNLLPKD---GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
|.|+|..|+|+...+ ..+++||||.+++++ ++.||++ +.||.|||+|.|.+.. ..++.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 689999999998887 578899999999988 4889988 4799999999999953 47899999998654
Q ss_pred CCCCCceeEEEEEECccceec
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
..--+|...+.+.+|.+.
T Consensus 72 ---~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 72 ---QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ---eecceeeehhhHHHHHHH
Confidence 356789999998887653
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=5.1e-08 Score=113.66 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=95.6
Q ss_pred cEEEEEEEEeeCCC---CCC---CCCCCCcEEEEEECC-----eEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeEE
Q 001521 5 QKLIVEVVDARNLL---PKD---GHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~---~~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L~ 72 (1061)
..|+|+|+.|.+|. ..+ .....||||+|.+-| .+++|+++.++.||.| ||+|.|.+..++. ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL---A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL---ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce---eEEE
Confidence 47999999999873 111 233479999999843 5689999999999999 9999999988773 6899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|.|+|+|.. +.|+|+|+..+|+..|. . +.+.++|.......-....|.+++.+.+.
T Consensus 508 f~V~D~d~~---~~d~figq~~lPv~~Lr-~---GYR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDND---TQNDFAGQTCLPLPELK-S---GVRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCCC---CCCCEEEEEEcchhHhh-C---CeeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999987 57999999999999973 2 55678887765444345678888887653
No 226
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.71 E-value=3.9e-08 Score=108.65 Aligned_cols=122 Identities=20% Similarity=0.396 Sum_probs=100.0
Q ss_pred CcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeccCCCCCCeee-ceeEEeecCCCCCCCCeEEEEEeeCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWN-EALEFNVGKPPQVFTDMFELNIFHDKAY 81 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~-e~f~f~v~~~~~~~~~~L~v~v~d~d~~ 81 (1061)
-|.|.|+|+.|++|+-+|. ....|.||.+++++..++|.+..+++||.|| +.|.|.|.+.++. ++.|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlq-deplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQ-DEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhc-cCCeeEEEeccccc
Confidence 3789999999999999986 4467999999999999999999999999998 7899999987654 68999999999999
Q ss_pred CCCCCCceeEEEEEECccceecC---------ceeeEEEeccccCCCCeeeeEEEEEEE
Q 001521 82 GPTTRNNFLGRIRLSSSQFVKKG---------EEALIYYPLEKKSLLSWIQGEVGLKIY 131 (1061)
Q Consensus 82 ~~~~~d~~lG~~~v~l~~l~~~~---------~~~~~w~~L~~~~~~~~~~G~l~l~~~ 131 (1061)
+.+|-||.+.++++.|.-.. ....-|||+.+.- ...+|||.+-+.
T Consensus 81 ---sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivk 134 (1169)
T KOG1031|consen 81 ---SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVK 134 (1169)
T ss_pred ---ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEE
Confidence 56899999999998764331 1223599988743 225788776543
No 227
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.68 E-value=1.3e-07 Score=110.89 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=83.8
Q ss_pred ceEEEEEEEeecCCCCCccc---CCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTV---NGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~---d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.+++++....+ +.....||||.|.+.+ ...||++..++.||.|||.|.|++.-|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999997531111 2233579999999533 2348898899999999999999999776 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+|+|... +|+|+|+..||+..|..|- +..+|....
T Consensus 548 ~d~d~~~-----------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINE-----------KDDFGGQTCLPVSEIRQGI---HAVPLFNRK 582 (598)
T ss_pred EECCCCC-----------CCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence 9998765 5889999999999999987 356886554
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.67 E-value=2.1e-07 Score=108.61 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=92.2
Q ss_pred ceEEEEEEEeecCCCC---CcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCcc-ccEEEEEEecCC-cEEEEE
Q 001521 644 VGTVELGVIGCKNLLP---MKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRW-NEQYTWKVYDPC-TVLALG 713 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~---~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~w-ne~~~~~v~~~~-~~l~i~ 713 (1061)
...|.|+|+++++|+. ....+.....||||.|.+.+ ...||+++.++.||.| ||.|.|.+..+. ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999999731 11112233479999999533 3459999999999999 999999999776 899999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
|+|+|..+ .|++||+..||++.|..|- +..+|......... ..+|-+.+.+...
T Consensus 510 V~D~d~~~-----------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDT-----------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCC-----------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 99998765 4889999999999999887 35688655433222 2556666666543
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=1.4e-08 Score=115.34 Aligned_cols=92 Identities=23% Similarity=0.483 Sum_probs=81.3
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE-------EecccCCCCCCccccEEEEEEe-cCC----cEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-------RTRTVSDSLEPRWNEQYTWKVY-DPC----TVL 710 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~-------rT~~~~~~~~P~wne~~~~~v~-~~~----~~l 710 (1061)
+-..|-|.|+.|+++.++ |.+|-|||||+|++++... ||+++++|+||+|+|.|+|.|. ++| ..|
T Consensus 945 n~q~L~veVlhA~diipL---D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPL---DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred cccchhhhhhcccccccc---CCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 345778899999999997 9999999999999998764 9999999999999999999998 454 689
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEccccc
Q 001521 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLE 748 (1061)
Q Consensus 711 ~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 748 (1061)
.++|||+|-+. .+||-|++.+-|..+.
T Consensus 1022 ~FTVMDHD~L~-----------sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDYLR-----------SNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccceec-----------ccccchHHHHhhCCCC
Confidence 99999999987 3779999999988874
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-07 Score=109.74 Aligned_cols=120 Identities=22% Similarity=0.330 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeE-----EEec-ccCCCCCCccccEEEEEEecCC-cEEEEEEEeC
Q 001521 646 TVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKW-----IRTR-TVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDS 717 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~-----~rT~-~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~ 717 (1061)
.|.|.|++++|+.+..... .+..+||||.|+..|-. .+|+ +..++.||.|+|.|+|++..|. +-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887632112 23468999999966543 3899 4557899999999999999887 8899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|..+ +|+|+|+..+|+++|..|- + -.||.......... -+|-+.+.++
T Consensus 697 d~~~-----------~ddF~GQ~tlP~~~L~~Gy--R-hVpL~~~~G~~~~~-asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----------KDDFIGQTTLPVSELRQGY--R-HVPLLSREGEALSS-ASLFVRIAIV 744 (746)
T ss_pred CCCC-----------cccccceeeccHHHhhCce--e-eeeecCCCCccccc-eeEEEEEEEe
Confidence 9876 6999999999999999887 3 35776543222222 4454555443
No 231
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.65 E-value=7.7e-08 Score=85.33 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=72.0
Q ss_pred EEEEEEEeeCCCCCcc---cCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccCCCC
Q 001521 491 LRATVIEAQDILPPVA---ALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGS 566 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d---~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~~~d 566 (1061)
|.|+|..|+|+.-. + ..+.+||||.+++++ ++.||++. .||.|||+|.|.+. ....+.|.|||+.+...
T Consensus 1 L~I~V~~~RdvdH~-~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~ 73 (109)
T cd08689 1 LTITITSARDVDHI-ASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQP 73 (109)
T ss_pred CEEEEEEEecCccc-cchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEec--CCcEEEEEEEeCCCCee
Confidence 67999999999877 5 467799999999986 48888865 49999999999983 45589999999877777
Q ss_pred ceeEEEEEeccccccc
Q 001521 567 VALGVTRVPLTAVERR 582 (1061)
Q Consensus 567 ~~lG~~~i~l~~l~~~ 582 (1061)
-.+|..-+.+++|...
T Consensus 74 ~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 74 VPVGLLWLRLSDIAEE 89 (109)
T ss_pred cceeeehhhHHHHHHH
Confidence 7999999999998643
No 232
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.65 E-value=2.7e-07 Score=108.04 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=84.0
Q ss_pred ceEEEEEEEeecCCCC--Cc-ccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLP--MK-TVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~--~~-~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.++++.- -+ ..+.....||||.|.+.+ ...||+++.++.||.|||.|.|.+.-|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998531 11 112334579999999542 3459999999999999999999998776 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCC
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGS 764 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 764 (1061)
+|+|..+ .|+|||+..+|++.|..|- +..+|.....
T Consensus 531 ~d~D~~~-----------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g 566 (581)
T PLN02222 531 HEYDMSE-----------KDDFGGQTCLPVWELSQGI---RAFPLHSRKG 566 (581)
T ss_pred EECCCCC-----------CCcEEEEEEcchhhhhCcc---ceEEccCCCc
Confidence 9998765 4889999999999999887 3568865543
No 233
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=104.77 Aligned_cols=121 Identities=29% Similarity=0.440 Sum_probs=99.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCcccc-EEEEEEecCC---cEEEEEEEeCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNE-QYTWKVYDPC---TVLALGVFDSWG 719 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne-~~~~~v~~~~---~~l~i~v~d~~~ 719 (1061)
.|.|.|.|.-|++|+.|+. .....|.||.+++++..++|.+..+++||.||. -|.|.|.|.. ..|.|.++|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 3789999999999999832 245689999999999999999999999999985 7889998643 789999999999
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEccccc----------CCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLE----------TGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
.+ .++.||+|.|.+..|- .|.+...|+|..+.- .|. +|+|.+-++..
T Consensus 80 ys-----------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkvd 136 (1169)
T KOG1031|consen 80 YS-----------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKVD 136 (1169)
T ss_pred cc-----------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEEe
Confidence 87 3779999999998862 345788999987642 232 38888766653
No 234
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.58 E-value=2.1e-07 Score=107.03 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=91.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeccCCCCCCeee-ceeEEeecCCCCCCCCeEEEEEee
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHTAVRDLNPTWN-EALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~tlnP~W~-e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..|.|.|+.|+.|+. .+.|.+.|||.|.+-| ..++|.++.|++||+|| |.|+|.+.+++ -..|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence 568899999999974 4467788999999833 34556666899999999 99999999998 4789999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCC
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 136 (1061)
.|.+ +...|||++.+|+..+. . +.+-++|.......-.-..|.+.+...+..
T Consensus 1141 eDmf---s~~~FiaqA~yPv~~ik-~---GfRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1141 EDMF---SDPNFLAQATYPVKAIK-S---GFRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cccc---CCcceeeeeecchhhhh-c---cceeeecccCchhhhhhhhheeeeEecccc
Confidence 9999 45679999999999863 3 334577766431111234566666666543
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.47 E-value=5.2e-07 Score=103.95 Aligned_cols=99 Identities=22% Similarity=0.448 Sum_probs=82.1
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-----CCeEE-EecccCCCCCCccc-cEEEEEEecCC-cEEEEEEEe
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWI-RTRTVSDSLEPRWN-EQYTWKVYDPC-TVLALGVFD 716 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~-rT~~~~~~~~P~wn-e~~~~~v~~~~-~~l~i~v~d 716 (1061)
-.|.|.|++|+.|+. .+.|.+.|||.|.+ +...+ +|.++.+.+||+|| |.|+|.|++|. ..|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999973 56777889999994 33344 44555678999999 99999999988 899999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.|.++. ++ |||++..|+..|..|- +..||+.
T Consensus 1141 eDmfs~----------~~-FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFSD----------PN-FLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccCC----------cc-eeeeeecchhhhhccc---eeeeccc
Confidence 999872 34 9999999999999886 4678853
No 236
>PLN02352 phospholipase D epsilon
Probab=98.34 E-value=2.7e-06 Score=101.74 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=92.2
Q ss_pred CcEEEEEEEEeeCCCCC----CC-CCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 4 IQKLIVEVVDARNLLPK----DG-HGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~----d~-~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
.|.|.++|.+|+-+... +. ....||||+|.+++ ...|| .+.-||.|+|+|.+.+.... +..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec
Confidence 38899999999844322 11 12239999999988 56688 56669999999999998875 3579999987
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCC
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~ 139 (1061)
. ..+||.+.+|+.+|+......+.||++.....+.....+|+++++|.+....+
T Consensus 83 ---~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 83 ---K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred ---C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence 1 46899999999998765454778999877543332225999999999976653
No 237
>PLN02352 phospholipase D epsilon
Probab=98.29 E-value=5.2e-06 Score=99.31 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=91.7
Q ss_pred ceEEEEEEEeecCCCCC-cccCC-CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCC
Q 001521 644 VGTVELGVIGCKNLLPM-KTVNG-KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWG 719 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~-~~~d~-~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 719 (1061)
-|.|.++|++|+-+... ...+. ....||||.|.+++.++ || .+..||.|||.|.+++.++. +.++|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 48899999999733210 00011 11239999999999988 88 55669999999999999888 789999999
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-EeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKV-YRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+ ..+||++.||+.+|..|.. .+.|+++.....+-... ..|++.++|++-.
T Consensus 83 -~------------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -K------------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAE 133 (758)
T ss_pred -C------------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhh
Confidence 2 4499999999999998865 78999998765433322 4899999998653
No 238
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.29 E-value=6.9e-06 Score=93.63 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=128.5
Q ss_pred eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCC-CCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEc
Q 001521 362 SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRG-DVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440 (1061)
Q Consensus 362 ~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~-~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 440 (1061)
...+|.++.+.+||.|-+.|.....-.. .+.|.+.++|.+.. .++...+|+|++...+.++...... ..-+.+
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~-vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----~~~l~~ 114 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEK-VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----TGPLLL 114 (529)
T ss_pred cccceeeeeccCCccceeeechhheeee-eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----hhhhhc
Confidence 3568999999999999999988876666 88999999997652 1356789999999999988874211 111122
Q ss_pred cC-CCccccceEEEEEEeccCCCCCCCccccCCCCCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEE
Q 001521 441 EG-GGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQL 519 (1061)
Q Consensus 441 ~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~l 519 (1061)
+. .....|.|.+...-. .+ ... ...-..+|++|... |..+++|||..+.-
T Consensus 115 ~~~~~~~~g~iti~aee~-----------~~---------------~~~--~~~~~~~~~~ld~k-d~f~ksd~~l~~~~ 165 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEED-----------ES---------------DND--VVQFSFRAKNLDPK-DFFSKSDPYLEFYK 165 (529)
T ss_pred ccCccCCcccEEEEeecc-----------cc---------------cCc--eeeeeeeeeecCcc-cccccCCcceEEEE
Confidence 22 223456666633210 00 001 23334568999998 99999999998865
Q ss_pred --C----CeeeeeeeeecCCCCCcccceeEEee----ccCCCCeEEEEEEeccC-CCCceeEEEEEecccccc
Q 001521 520 --G----FQVQKTKVSVTRNGTPSWNEDLLFVA----AEPFTDQLSFTLENRQH-KGSVALGVTRVPLTAVER 581 (1061)
Q Consensus 520 --g----~~~~kT~~~~~~t~nP~wne~f~f~v----~~~~~~~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~ 581 (1061)
+ ...++|++.+ ++++|.|.... ... ....+..+.+.+||++. ++++++|++..++.++..
T Consensus 166 ~~~d~s~~~~~~tEv~~-n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 166 RVDDGSTQMLYRTEVVK-NTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ecCCCceeeccccceec-cCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 2 2577889888 99999998732 211 11223578899999999 888999999999998864
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.96 E-value=5.9e-06 Score=99.25 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=88.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
+|+|.|-|..|++|.--..+.-+||||+..+-- .+.||+++.+|.||.|||.+.+.-...+....++|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 689999999999996555577899999999832 578999999999999999998874443323357899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEecccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 116 (1061)
+.. ..+.|||.+.++|.++-...+ ...||+|...
T Consensus 1603 ~~~---~en~~lg~v~i~L~~~~l~kE-~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGL---LENVFLGGVNIPLLKVDLLKE-SVGWYNLGAC 1636 (1639)
T ss_pred cce---eeeeeeeeeecchhhcchhhh-hcceeecccc
Confidence 988 678999999999998544333 3369998764
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.96 E-value=0.0032 Score=69.80 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=152.1
Q ss_pred EEEEEEEeecCCC--CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEecc-------CCCCCCeEEEEEEcCCCCCCC
Q 001521 337 LFVRVVKARFLPT--KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRD-------SPESSSFLEVSVWDPPRGDVA 407 (1061)
Q Consensus 337 L~V~v~~a~~L~~--~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~~L~i~V~d~d~~~~~ 407 (1061)
+.|.|+++++.+. ...-+|+.+++|....|..+..+..|.||..+.+.++ ..+ ..+|++++|-.|.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~-~tPiKl~c~a~~~~--~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQ-RTPIKLQCFAVDGS--T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhcc-CCceEEEEEEecCC--C
Confidence 6789999999987 4556788899999999999999999999999999853 233 78899999987721 2
Q ss_pred CCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC----CccccceEEEEEEeccCCC---CC--------CCccccCC
Q 001521 408 APPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG----GAYSGDLMLATWVGTQADD---SF--------PDAWKTDT 472 (1061)
Q Consensus 408 ~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~----~~~~G~i~l~~~~~~~~d~---~~--------~~~~~~~~ 472 (1061)
+..+.||++.+||..+......+....+.||+|-+. .+.+-+|.+.+.+-..... .+ +.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999998822222234578899999876 2234567776655433221 00 00000000
Q ss_pred CCCc----------ccccccc-------cCCceEEEEEEEEEeeCCCCCc-----ccCCCCCeEEEEEECCeeeeeeeee
Q 001521 473 AGNV----------NSKAKVY-------VSPKLWYLRATVIEAQDILPPV-----AALKEASFTIKAQLGFQVQKTKVSV 530 (1061)
Q Consensus 473 ~~~~----------~~~~~~~-------~~~~l~~L~V~V~~a~~L~~~~-----d~~~~~dpyv~v~lg~~~~kT~~~~ 530 (1061)
+... ......+ ....+..|.|++..|+||.... +..+....|....+-+..+.|..-.
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0000 0000000 0234556999999999997651 1113356677777766666666554
Q ss_pred cCCCCCcc--cceeEEeeccC---------CCCeEEEEEEeccCCCCceeEEEEEeccccccc
Q 001521 531 TRNGTPSW--NEDLLFVAAEP---------FTDQLSFTLENRQHKGSVALGVTRVPLTAVERR 582 (1061)
Q Consensus 531 ~~t~nP~w--ne~f~f~v~~~---------~~~~L~i~V~D~d~~~d~~lG~~~i~l~~l~~~ 582 (1061)
...+|.| ++...+.+... ....|.|.++- .+..||.+.|++..+...
T Consensus 239 -~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 239 -SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred -ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----CCcEEEEEEEEhhhccCC
Confidence 5667755 33222433211 22367777774 577899999999998643
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.88 E-value=1.7e-05 Score=95.58 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=83.4
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEEC-----CeeeeeeeeecCCCCCcccceeEEee---ccCCCCeEEEEEEec
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLG-----FQVQKTKVSVTRNGTPSWNEDLLFVA---AEPFTDQLSFTLENR 561 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v---~~~~~~~L~i~V~D~ 561 (1061)
.|.|.|..|++|+-. ..+..+||||+.++. ..+.||+++. +|.||.|||.+.+.- ....+..|.++||..
T Consensus 1525 ~LtImV~H~K~L~~L-qdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALL-QDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred eEEEEhhhhcccccc-cCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 399999999999776 677889999999995 2467888888 999999999887652 122245899999998
Q ss_pred cC-CCCceeEEEEEeccccccccccccccceEEEccc
Q 001521 562 QH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 562 d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
++ ..+.++|.+.|+|.++...++ ...||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhh----hcceeeccc
Confidence 88 889999999999999876533 458999965
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.63 E-value=9e-05 Score=68.00 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=75.4
Q ss_pred EEEEEEeecCCC------------------CCCcEEEEEE----CCeeeeeccccCCCCceeeeEEEEecc--------C
Q 001521 338 FVRVVKARFLPT------------------KGSPVVKIAV----ANSRVESKPARRTSCFEWDQTFAFGRD--------S 387 (1061)
Q Consensus 338 ~V~v~~a~~L~~------------------~~dPyv~v~~----~~~~~kT~~~~~t~nP~Wne~f~f~v~--------~ 387 (1061)
.|.|++|.+|.. ..++||++.+ ++...+|+++-++=-|.|+..++|++. +
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge 81 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE 81 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence 466677776652 5689999985 337889999999999999999999965 1
Q ss_pred -------CCCCCeEEEEEEcCCCCCC-------CCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEc
Q 001521 388 -------PESSSFLEVSVWDPPRGDV-------AAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440 (1061)
Q Consensus 388 -------~~~~~~L~i~V~d~d~~~~-------~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 440 (1061)
+. ...+.++||+.+.+.. -.+|-.||.+.|++.+|..+ ......||++
T Consensus 82 ~~sLAElLe-~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 82 AISLAELLE-SAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred cccHHHHhh-cceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 22 7789999999765321 23566899999999999985 5566788875
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.60 E-value=0.008 Score=66.73 Aligned_cols=236 Identities=9% Similarity=0.163 Sum_probs=154.9
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccC-------CCCeEEEEEEeccC
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP-------FTDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~V~D~d~ 563 (1061)
+.|.|++|+|.+.. ..-...|..+++++...|..+. .+..|.||..+.+.+... ....|++++|-.+.
T Consensus 2 ivl~i~egr~F~~~----~~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQR----PRHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCC----CCccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 57889999999865 3356789999999999999777 899999999887765321 23489999999884
Q ss_pred --CCCceeEEEEEecccc---ccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCccc-----ccCC--
Q 001521 564 --KGSVALGVTRVPLTAV---ERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAH-----VCSD-- 631 (1061)
Q Consensus 564 --~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~-----~~~d-- 631 (1061)
+..+.+|.+.++|... ..+ ......+||+|-+.+.+-.+..-+|.+.+.+............ ...+
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~--~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~ 154 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEK--NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQ 154 (340)
T ss_pred CCCcceeccEEEEEcccccccccc--ccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCccc
Confidence 8899999999999998 322 1235789999988433333456678888877643221000000 0000
Q ss_pred ---------Cchhhh-----------ccC----CCCceEEEEEEEeecCCCCCcccC---CCCCCCcEEEEEeCCeEEEe
Q 001521 632 ---------YRPTAR-----------QLW----KPPVGTVELGVIGCKNLLPMKTVN---GKSTTDAYVVAKYASKWIRT 684 (1061)
Q Consensus 632 ---------~~~~~~-----------~~~----~~~~g~l~v~v~~a~~L~~~~~~d---~~g~~dpyv~~~~~~~~~rT 684 (1061)
..+..- |+- ..+.-.|.|++-.|.+|..+.-.. ..+.+.-|....+-+.-+.|
T Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~ 234 (340)
T PF12416_consen 155 GHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTT 234 (340)
T ss_pred CCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEe
Confidence 000000 000 123456788888898886541111 11234555566666667888
Q ss_pred cccCCCCCCcc--ccEEEEEEec----------CCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC
Q 001521 685 RTVSDSLEPRW--NEQYTWKVYD----------PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 685 ~~~~~~~~P~w--ne~~~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
...+...+|.| ++...+.++. ....|.|.++.. +..||.+.|++..+-.
T Consensus 235 ~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----------------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 235 EPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----------------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----------------CcEEEEEEEEhhhccC
Confidence 88888888877 3444466652 225677887763 5589999999999854
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.44 E-value=0.00018 Score=86.03 Aligned_cols=88 Identities=17% Similarity=0.323 Sum_probs=73.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEE-EEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVV-IDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~-v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|...+++++|+ ++ ..|||.. +++|.+.+||.+.++|+||+||+...|.+.... ....++.|||.+.+
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 121 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETNRL- 121 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecCCC-
Confidence 478899999988 33 3588655 567889999999999999999999999998876 35579999999999
Q ss_pred CCCCCceeEEEEEECccceecC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKG 104 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~ 104 (1061)
++++.+|.+++++.++...+
T Consensus 122 --s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 --SKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred --CHHHhhhheeecHhhccHHH
Confidence 78999999999988865543
No 245
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00036 Score=75.40 Aligned_cols=109 Identities=20% Similarity=0.338 Sum_probs=86.3
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEE-eCCeEE----EecccCCCCCCccccEEEEEEecCCcEEEEEEEe
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK-YASKWI----RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFD 716 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~-~~~~~~----rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d 716 (1061)
...|.|+|.|++|++|.+ |. .....++|||.|+ +++..+ +|+...+|++|.+-.+..|.-.-+...|.++||-
T Consensus 266 d~~g~l~vEii~ar~l~~-k~-~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVV-KP-GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccc-cC-CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 457899999999999987 21 1233689999999 444332 8889999999999889999888888999999996
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc-EEeeEEeceec
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK-VYRNTYPLLLL 762 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 762 (1061)
.-.-. +++.|+|-+.|-+.+|.... ....||+|..-
T Consensus 344 dygRm----------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRM----------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccc----------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 43322 47889999999999998766 56789998654
No 246
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.34 E-value=0.00019 Score=65.89 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=77.3
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeccCCCCCCeeeceeEEeecC----C--
Q 001521 7 LIVEVVDARNLLPKDG-------------HGTSSPYVVIDY----YGQRRKTHTAVRDLNPTWNEALEFNVGK----P-- 63 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~-------------~g~~dPyv~v~~----~~~~~~T~~~~~tlnP~W~e~f~f~v~~----~-- 63 (1061)
|.|.|++|.+|..... .=.-++||++.+ ++...+|+++.++.-|.|+-+++|.+.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678888888864321 113489999986 4478999999999999999999998761 0
Q ss_pred ------CCCCCCeEEEEEeeCCCCCC-------CCCCceeEEEEEECccceecCceeeEEEec
Q 001521 64 ------PQVFTDMFELNIFHDKAYGP-------TTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 64 ------~~~~~~~L~v~v~d~d~~~~-------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
+.+...++.++||+...-+. ..+|-.||.+.||+.+|+....-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11124678999999875422 124558999999999987764444459874
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.29 E-value=0.00041 Score=82.96 Aligned_cols=87 Identities=10% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccEEEEEEEEeecCCCCCCcEEE-EEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCe
Q 001521 334 MHYLFVRVVKARFLPTKGSPVVK-IAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGF 412 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~~~dPyv~-v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~ 412 (1061)
.++..+++++|+ ..-.|+|.. +++|.+++||.+.++|+||+||+...|.+.... .....+.|||++. +..+++
T Consensus 53 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~s~n~l 126 (644)
T PLN02964 53 SGIALLTLVGAE--MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG-PHLARISVFETNR---LSKNTL 126 (644)
T ss_pred cCeEEEEeehhh--hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC-cceEEEEEEecCC---CCHHHh
Confidence 678889999997 233577665 566779999999999999999999999988776 6778999999998 899999
Q ss_pred eEEEEEECcccCCC
Q 001521 413 LGGICFDVTEIPLR 426 (1061)
Q Consensus 413 lG~~~i~L~~l~~~ 426 (1061)
+|.|.+||.++..+
T Consensus 127 v~~~e~~~t~f~~k 140 (644)
T PLN02964 127 VGYCELDLFDFVTQ 140 (644)
T ss_pred hhheeecHhhccHH
Confidence 99999999887763
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.00026 Score=76.46 Aligned_cols=110 Identities=24% Similarity=0.436 Sum_probs=88.6
Q ss_pred CCCCcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 1 MAAIQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 1 ~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
|..+|.|.|.|++|++|..+.. ...++|||+|.+- + .+.+|+...+|++|-+.+...|.-..+. ..|.+.
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~t 340 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGT 340 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEE
Confidence 7789999999999999987754 4478999999982 2 5789999999999999888888777664 789999
Q ss_pred Eee-CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 75 IFH-DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 75 v~d-~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
||- +.++ -++.|+|.+.+-+++|-........||+|.+..
T Consensus 341 v~gdygRm---d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRM---DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred Eecccccc---chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 997 4566 457899999999999754443556799887643
No 249
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.03 E-value=0.00073 Score=57.54 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=65.2
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEE--EEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 8 IVEVVDARNLLPKDG-HGTSSPYVV--IDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 8 ~V~v~~a~~L~~~d~-~g~~dPyv~--v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
-|+|+.+++|.-... +..+.-|++ +.+.+ ..++|++.....||.+.|+|.|.+...... +-.|.|.|+. ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~-~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQ-TVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhcc-ceEEEEEeec--cC--
Confidence 378889999853322 223333655 34444 689999999999999999999998876532 5688899988 33
Q ss_pred CCCCceeEEEEEECccc
Q 001521 84 TTRNNFLGRIRLSSSQF 100 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l 100 (1061)
.|...||.+.+.++++
T Consensus 77 -~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 77 -PRKRTIGECSLSLRTL 92 (103)
T ss_pred -CccceeeEEEeecccC
Confidence 5688999999999985
No 250
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.74 E-value=0.0026 Score=54.32 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=67.7
Q ss_pred EEEEEEeeCCCCCcccCCCCCeEEEEEEC-C--eeeeeeeeecCCCCCcccceeEEeeccCC--CCeEEEEEEeccCCCC
Q 001521 492 RATVIEAQDILPPVAALKEASFTIKAQLG-F--QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQHKGS 566 (1061)
Q Consensus 492 ~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-~--~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~d~~~d 566 (1061)
-|+|++|+||.-...-+..+..|++-.+- . -..||.... +..||+|.|+|.|.+.... .-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCcc
Confidence 47889999996441334456678776552 3 345565555 8999999999999876444 3377788886 22788
Q ss_pred ceeEEEEEeccccccccccccccceEEE
Q 001521 567 VALGVTRVPLTAVERRVDDRKVASRWFT 594 (1061)
Q Consensus 567 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 594 (1061)
+.||.|.+.++++... ...+|.+
T Consensus 80 e~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-----Hhhhhhc
Confidence 8999999999988642 3456654
No 251
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.50 E-value=0.024 Score=55.18 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=91.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCC--CCCCc--EEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCC----------CCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGH--GTSSP--YVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP----------QVFT 68 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~--g~~dP--yv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~----------~~~~ 68 (1061)
....|+++|..++-....-.. +..+. ++-+.+++|+|+|+.+..+.+|.++|.|-|.+.... ....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 345689999998876433211 33333 555667999999999999999999999999987653 1124
Q ss_pred CeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCe---eeeEEEEEEEEEeCC
Q 001521 69 DMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW---IQGEVGLKIYYVDIV 136 (1061)
Q Consensus 69 ~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~---~~G~l~l~~~~~~~~ 136 (1061)
+.+++.|---|.. +...++|...++-..++..+... .+++++-.+.... ..|-|.+++++++..
T Consensus 87 ~pihivli~~d~~---~~~~Lv~s~~ldWR~vL~s~~~~-~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPS---GETTLVGSHFLDWRKVLCSGNGS-TSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCC---CceEeeeeceehHHHHhccCCCc-cceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6788888888877 34589999999988876655421 1444333333333 679999999999853
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.44 E-value=0.0031 Score=68.77 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEe---C--CeEEEecccCCCCCCccccEEEEEEec---CC---------c
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---A--SKWIRTRTVSDSLEPRWNEQYTWKVYD---PC---------T 708 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~--~~~~rT~~~~~~~~P~wne~~~~~v~~---~~---------~ 708 (1061)
.|++.|++|.+++.. .+....|-|+.+.+ + .+..+|.+++++.+|.|+|.|.+.+.. .+ .
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 567788888887542 22334678888872 2 234599999999999999999999974 22 3
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCc-cccEEEEEEEEE
Q 001521 709 VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMT-KMGEIEVAVRFI 780 (1061)
Q Consensus 709 ~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~-~~G~i~l~~~f~ 780 (1061)
-+.|++|....+. ..|.++|.+.|.|..|++.......|+|++. ++ ..|.|++.++..
T Consensus 445 g~kfeifhkggf~----------rSdkl~gt~nikle~Len~cei~e~~~l~DG----RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN----------RSDKLTGTGNIKLEILENMCEICEYLPLKDG----RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccc----------cccceeceeeeeehhhhcccchhhceecccc----ccccCCeeEEEEEEe
Confidence 5899999987765 2599999999999999988877888999753 22 238898888885
No 253
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.18 E-value=0.0036 Score=68.26 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=92.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---C--CeEEEeeccCCCCCCeeeceeEEeecCCCCC--------CCCeE
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY---Y--GQRRKTHTAVRDLNPTWNEALEFNVGKPPQV--------FTDMF 71 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~--~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~--------~~~~L 71 (1061)
..|.+.|+++.+++.....---|-|+++.+ + .++-+|.++++|.+|.++|.|.+.+...... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 356677888887754432223467999887 2 2678999999999999999999988773322 12457
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCC
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 136 (1061)
.|++|+...+. ++|.++|.+.+.+..| +..-+....++|.+.. ..+.|.|.+++......
T Consensus 447 kfeifhkggf~--rSdkl~gt~nikle~L-en~cei~e~~~l~DGR--K~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 447 KFEIFHKGGFN--RSDKLTGTGNIKLEIL-ENMCEICEYLPLKDGR--KAVGGKLEVKVRIRQPI 506 (523)
T ss_pred eEEEeeccccc--cccceeceeeeeehhh-hcccchhhceeccccc--cccCCeeEEEEEEeccc
Confidence 89999998774 6799999999999875 3333334567776532 34689999999887643
No 254
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.72 E-value=0.054 Score=52.85 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHHHHHHHHHHHc
Q 001521 851 MRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWF 900 (1061)
Q Consensus 851 ~~~~~~N~~Rl~~~~~~~~~~~~~i~~l~~W~~P~~T~~~~~~~~~~~~~ 900 (1061)
.++++.=..|++.+++.+-..+..++.+++|++|..|.+++++.++++.-
T Consensus 61 ydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 61 YDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 34555556667777778888899999999999999999999887776554
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.59 E-value=0.15 Score=49.85 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=84.8
Q ss_pred CceEEEEEEEEEeeCCCCCcc-cCCCCCeE--EEEEECCeeeeeeeeecCCCCCcccceeEEeeccCC------------
Q 001521 486 PKLWYLRATVIEAQDILPPVA-ALKEASFT--IKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPF------------ 550 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d-~~~~~dpy--v~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 550 (1061)
+...||.+.|..++-...-.+ ..+..+.. +-+.+++|.++|+.+. -+.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhc
Confidence 445579999999886543201 11333444 4445589999999998 8999999999999886553
Q ss_pred -CCeEEEEEEeccC-CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeC
Q 001521 551 -TDQLSFTLENRQH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDG 617 (1061)
Q Consensus 551 -~~~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~ 617 (1061)
.+.+.+.|.-.|. +...++|.-.++...+....... ...-+.|.+......-..|-+.+++.+-+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~--~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS--TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCc--cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 2367777776665 55689999999999887543211 12224454432233346788888887643
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.10 E-value=0.036 Score=66.12 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEE-C------CeeeeeeeeecCCCCCcccc-eeEEe-eccCCCCeEEEEEEe
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQL-G------FQVQKTKVSVTRNGTPSWNE-DLLFV-AAEPFTDQLSFTLEN 560 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~l-g------~~~~kT~~~~~~t~nP~wne-~f~f~-v~~~~~~~L~i~V~D 560 (1061)
.|.|+|++|.-|..+ + ...||+|.+ | ...+||+++..++.||+|+| .|.|. |..|.-..|+|.||+
T Consensus 704 t~sV~VISgqFLSdr-k----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDR-K----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eEEEEEEeeeecccc-c----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 499999999999765 3 347999998 3 25678888887899999998 47774 556666789999998
Q ss_pred ccCCCCceeEEEEEecccccc
Q 001521 561 RQHKGSVALGVTRVPLTAVER 581 (1061)
Q Consensus 561 ~d~~~d~~lG~~~i~l~~l~~ 581 (1061)
. ...+||+-.+|+..|..
T Consensus 779 E---ggK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 779 E---GGKFIGQRILPVDGLNA 796 (1189)
T ss_pred c---CCceeeeeccchhcccC
Confidence 5 57899999999998864
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.00 E-value=0.14 Score=50.71 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=64.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|+|+++.++.-.+ .+|-||.+.+ |++ ...|+.+.. .++.|||.+.|++.-.+...+..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 56899999999987543 4688999876 443 234554443 6799999999988766555578999999997
Q ss_pred CCCCC-CCCCceeEEEEEECcc
Q 001521 79 KAYGP-TTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~-~~~d~~lG~~~v~l~~ 99 (1061)
..... ......+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 64210 0112468999998876
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.68 E-value=0.17 Score=51.10 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=63.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|+|+.+.+|... ....+-||.+.+ |++ ...|+.+.-+.++.|||.+.|++.-.++..+..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999762 234667888755 553 34565555556799999999987665554478999999997
Q ss_pred CCCCC-------------CCCCceeEEEEEECcc
Q 001521 79 KAYGP-------------TTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~-------------~~~d~~lG~~~v~l~~ 99 (1061)
..... .+.+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 54310 0123577777777665
No 259
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.30 E-value=0.28 Score=48.57 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|.|+.+.++... ..+|.||++.+ |++.. .|+.+. ..++.|||-+.|++. .|.+..|.|+||+.
T Consensus 10 ~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 10 LRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred eEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 89999999998754 34688988876 55433 344333 367999999888764 34466999999997
Q ss_pred cC-C----CCceeEEEEEecccc
Q 001521 562 QH-K----GSVALGVTRVPLTAV 579 (1061)
Q Consensus 562 d~-~----~d~~lG~~~i~l~~l 579 (1061)
.. . ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 64 1 225689999887763
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.53 E-value=0.42 Score=48.32 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=58.8
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|+|+.+.+|... ....+.||++.| |++.. .|+... ...++.|||.+.|++. .|.+..|.|.||+.
T Consensus 10 f~i~i~~~~~~~~~---~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 10 FSITLHKISNLNAA---ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred EEEEEEEeccCccC---CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 89999999999863 234677888766 65433 444333 3567999999888764 44566999999987
Q ss_pred cC-C----------------CCceeEEEEEeccc
Q 001521 562 QH-K----------------GSVALGVTRVPLTA 578 (1061)
Q Consensus 562 d~-~----------------~d~~lG~~~i~l~~ 578 (1061)
.. . ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 54 1 13577877777665
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.42 E-value=0.37 Score=47.98 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=64.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|++....++...+ ....+-||.+.+ |++ ...|.......++.|||...|++.-.++..+..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 46788899988876522 234667777765 443 23444443336899999999987655544468999999998
Q ss_pred CCCCCCCCCceeEEEEEECcc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
+.... .++..||.+.++|-+
T Consensus 87 ~~~~~-~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGS-KKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCC-CcceEEEEEeEEeEc
Confidence 76510 135789999999877
No 262
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.32 E-value=0.13 Score=54.34 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=79.8
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..|.|.+++.++++|+-... +-+-+-||++..+.+ +.||.+......=.|.|+|+..+.+. ..+.+-||.|+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 45899999999999965432 456788999999874 66777777777778999999998874 56889999998
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
.. .++++.-..-+.+..+..... +.-+.|.- +.+|.+-+++.+.+.
T Consensus 124 pq---~RHKLC~~g~l~~~~v~rqsp--d~~~Al~l-----ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 124 PQ---RRHKLCHLGLLEAFVVDRQSP--DRVVALYL-----EPRGQPPLRLPLADP 169 (442)
T ss_pred ch---hhccccccchhhhhhhhhcCC--cceeeeec-----ccCCCCceecccCCh
Confidence 77 455543222233333222222 22233322 347888888887763
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.70 E-value=0.41 Score=47.63 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEE
Q 001521 23 HGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLS 96 (1061)
Q Consensus 23 ~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~ 96 (1061)
...+|-||++.+ ++. ...|+.+.-+..+.|||...|++.-.+...+..|.|+|||.+.. ++...+|.+.++
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~---~~~~~vg~~~~~ 103 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT---GKAVPFGGTTLS 103 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC---CCceEEEEEEEe
Confidence 345788999876 443 23566665566789999999998776655578999999998765 356789999999
Q ss_pred CccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 97 SSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 97 l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
|-+- .+ ++ .+|...+.+....
T Consensus 104 lFd~--~g-----~L----------r~G~~~l~lw~~~ 124 (159)
T cd08397 104 LFNK--DG-----TL----------RRGRQKLRVWPDV 124 (159)
T ss_pred eECC--CC-----cE----------ecCCEEEEEEeCC
Confidence 8762 11 22 1777777777444
No 264
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.65 E-value=0.22 Score=52.77 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=85.2
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCC
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGI 720 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 720 (1061)
...|.|.++++.++||.-.. ...+-..+-||++.++.+ ..||.+......-.|.|.|..++.. .+++.+-||.|+.-
T Consensus 48 s~tGiL~~H~~~GRGLr~~p-~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTP-QQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccCh-hccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34699999999999995421 111335789999998765 4578777777778899999988763 46899999999864
Q ss_pred CCCCCCCCCCCCCCcc--eEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecCCchhhhhhcCCCCCC
Q 001521 721 FEGENGSMETTRPDCR--IGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLP 798 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~~~~~~~~~~~~p~~p 798 (1061)
. ++.+ +| .|.+..+..... .+-+.|+. ...|.+.+++.|. +..+.|-+..+|
T Consensus 126 ~-----------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~l------ePrgq~~~r~~~~------Dp~av~rR~~~P 179 (442)
T KOG1452|consen 126 R-----------RHKLCHLG--LLEAFVVDRQSP-DRVVALYL------EPRGQPPLRLPLA------DPEAVTRRTVNP 179 (442)
T ss_pred h-----------hccccccc--hhhhhhhhhcCC-cceeeeec------ccCCCCceecccC------ChHHHhhcccCc
Confidence 3 2333 44 333333322110 22333322 2348999999997 666666677777
Q ss_pred Cc
Q 001521 799 LM 800 (1061)
Q Consensus 799 ~~ 800 (1061)
+.
T Consensus 180 rl 181 (442)
T KOG1452|consen 180 RL 181 (442)
T ss_pred cc
Confidence 64
No 265
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.55 E-value=0.19 Score=60.37 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=68.2
Q ss_pred ccEEEEEEEEeecCCC-CCCcEEEEEECC-------eeeeecccc-CCCCceeee-EEEEeccCCCCCCeEEEEEEcCCC
Q 001521 334 MHYLFVRVVKARFLPT-KGSPVVKIAVAN-------SRVESKPAR-RTSCFEWDQ-TFAFGRDSPESSSFLEVSVWDPPR 403 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-~~dPyv~v~~~~-------~~~kT~~~~-~t~nP~Wne-~f~f~v~~~~~~~~L~i~V~d~d~ 403 (1061)
.+.|.|+|+++.=|.. +...||+|..-| ..+||++.. ++.||+|+| .|.|...-+.+-..|.|-|++.
T Consensus 702 A~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE-- 779 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE-- 779 (1189)
T ss_pred EeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc--
Confidence 4578899999998876 888999999866 357888765 489999987 5888744333378999999997
Q ss_pred CCCCCCCCeeEEEEEECcccCC
Q 001521 404 GDVAAPPGFLGGICFDVTEIPL 425 (1061)
Q Consensus 404 ~~~~~~d~~lG~~~i~L~~l~~ 425 (1061)
...+||.-.+++..+..
T Consensus 780 -----ggK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 -----GGKFIGQRILPVDGLNA 796 (1189)
T ss_pred -----CCceeeeeccchhcccC
Confidence 36799999999887766
No 266
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.76 E-value=3.1 Score=40.55 Aligned_cols=124 Identities=14% Similarity=0.238 Sum_probs=80.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeecc-CCCCCCeeeceeEEeecCCC----C-CCCCeEEEE
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ---RRKTHTA-VRDLNPTWNEALEFNVGKPP----Q-VFTDMFELN 74 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~-~~tlnP~W~e~f~f~v~~~~----~-~~~~~L~v~ 74 (1061)
+-.+.|+|++..+++. ...--||+...++. ...|... ..+-.-.|||+|.+.+.-.. . .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3567899999999866 12334555544443 2344443 22334789999998764321 1 224678999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecC-ceeeEEEeccccCCCCeeeeEEEEEEEEEeCCC
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKG-EEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVP 137 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 137 (1061)
|+....- ++...+|.+.++|+++.... .....-++|... ......|++.+.+....+
T Consensus 82 v~~~~~~---~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGS---GKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCC---CccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECcc
Confidence 9998643 23369999999999987753 344455777664 234678888888887544
No 267
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.45 E-value=1.5 Score=38.38 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECcccee
Q 001521 24 GTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 24 g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
|.++-.+++.+++ ...+|.-... .+..|++.|.|.+.. +++|+|.||-.|-- .+.|-..+.|++...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-----sRELEI~VywrD~R------slCav~~lrLEd~~~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-----SRELEIAVYWRDWR------SLCAVKFLKLEDERH 74 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-----ccEEEEEEEEecch------hhhhheeeEhhhhcc
Confidence 3467889999987 5666655433 588999999999987 47899999988754 467888888888321
Q ss_pred cCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 103 KGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 103 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+ .-.+|. .+|.+...+.|
T Consensus 75 -~----~~~~le-------pqg~l~~ev~f 92 (98)
T cd08687 75 -E----VQLDME-------PQLCLVAELTF 92 (98)
T ss_pred -c----ceeccc-------cccEEEEEEEe
Confidence 1 223333 37777777776
No 268
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.45 E-value=1.8 Score=43.67 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe---EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ---RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..++|+|..+.++... ......-||++.+ |++ ..+|+...-+.++.|||.+.|++.-.++.....|.|.||+..
T Consensus 10 ~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4578899998755332 2222335666544 443 236666666678999999999987766555789999999974
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.32 E-value=1.1 Score=44.45 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=59.6
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|.+....++... .....+.||++.+ |++.. .|.... ...++.|||.+.|.+. .|.+..|.|.||+.
T Consensus 10 ~~i~i~~~~~~~~~--~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 10 LRIKIHGITNINLL--DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred eEEEEEeecccccc--CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 78888888887652 1234677888866 54321 222222 2368999999888753 44566999999998
Q ss_pred cC-C--CCceeEEEEEecccc
Q 001521 562 QH-K--GSVALGVTRVPLTAV 579 (1061)
Q Consensus 562 d~-~--~d~~lG~~~i~l~~l 579 (1061)
+. + .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 76 3 468999999998764
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.19 E-value=0.77 Score=46.43 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=65.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeccC--C--CCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQR----RKTHTAV--R--DLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~--~--tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
..+.|+|..+.+++........|-||.+.+ |++. ..|+... + ...+.|||.+.|.+.-.++..+.+|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 568899999999987765556888999876 5432 2443321 1 2257799999998876554446799999
Q ss_pred EeeCCCCCCC------CCCceeEEEEEECcc
Q 001521 75 IFHDKAYGPT------TRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 75 v~d~d~~~~~------~~d~~lG~~~v~l~~ 99 (1061)
||+......+ ..+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9997654100 034688888888766
No 271
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=91.06 E-value=0.047 Score=55.22 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccCC
Q 001521 980 LGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDR 1041 (1061)
Q Consensus 980 l~~va~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~~ 1041 (1061)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+-=|.+...
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33455567888999999999999999999988888888888777766655555666665544
No 272
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=90.80 E-value=5 Score=39.07 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=73.8
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCee---eeeeeeecCCCCCcccceeEEeeccCC--------CCeEEEEE
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQV---QKTKVSVTRNGTPSWNEDLLFVAAEPF--------TDQLSFTL 558 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~~~--------~~~L~i~V 558 (1061)
.+.+.|++..+++.. ....||+..-|+.. ..|......+..-.||+.|.+.+.... ...+.|.|
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 488999999998753 34456777666543 555544435667899999987754221 22788888
Q ss_pred EeccC-CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEe
Q 001521 559 ENRQH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCF 615 (1061)
Q Consensus 559 ~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l 615 (1061)
+.... ++...+|.+.|+|+++.... ......-+.|... ......+.+++.+
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~~----~~~~a~L~isi~~ 134 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANED--EEPITVRLLLKKC----KKSNATLSISISL 134 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcC--CCcEEEEEeCccC----CCCCcEEEEEEEE
Confidence 88754 33369999999999987532 1123344666551 2344566666654
No 273
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=90.78 E-value=0.89 Score=45.23 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCCCcEEEEE--eCCeEE----EecccCCCCCCccccEEEEEEe--c--CCcEEEEEEEeCCCCCCCCCCCCCCCCCCcc
Q 001521 667 STTDAYVVAK--YASKWI----RTRTVSDSLEPRWNEQYTWKVY--D--PCTVLALGVFDSWGIFEGENGSMETTRPDCR 736 (1061)
Q Consensus 667 g~~dpyv~~~--~~~~~~----rT~~~~~~~~P~wne~~~~~v~--~--~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~ 736 (1061)
..+|-||.+. .|++.+ .|..+.-+..+.|||-.+|+|. | ..+.|.|+|||.+..+ +...
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-----------~~~~ 96 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-----------KAVP 96 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-----------CceE
Confidence 3477787765 566544 6666665677899999999987 3 3489999999986543 4668
Q ss_pred eEEEEEEccc
Q 001521 737 IGKVRIRIST 746 (1061)
Q Consensus 737 lG~~~i~l~~ 746 (1061)
||.+.++|=+
T Consensus 97 vg~~~~~lFd 106 (159)
T cd08397 97 FGGTTLSLFN 106 (159)
T ss_pred EEEEEEeeEC
Confidence 9999888755
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.36 E-value=1.3 Score=44.91 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=62.5
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeee--c-CCCCCcccceeEEeec---cCCCCeEEEEE
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSV--T-RNGTPSWNEDLLFVAA---EPFTDQLSFTL 558 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~--~-~t~nP~wne~f~f~v~---~~~~~~L~i~V 558 (1061)
++|+|..+.+++.. ......|-||++.+ |++.. .|+... + -...+.|||-+.|.+. .|.+..|.|.+
T Consensus 10 ~~i~v~~~h~~~~~-~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 10 LSVTVSSLHRIPPT-WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred EEEEEEEeecCChH-HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 89999999999987 65556888988876 55433 333211 0 1235779998888763 34566999999
Q ss_pred EeccC-C---------CCceeEEEEEecccc
Q 001521 559 ENRQH-K---------GSVALGVTRVPLTAV 579 (1061)
Q Consensus 559 ~D~d~-~---------~d~~lG~~~i~l~~l 579 (1061)
|+... . .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99765 3 457899999888764
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.64 E-value=2.1 Score=43.27 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee---eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEecc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ---KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENRQ 562 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~d 562 (1061)
++|+|+.+..+ .. +.......||++.| |++.. +|.... .+.++.|||-+.|++. .|....|.|.||+..
T Consensus 12 friki~~~~~~-~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDIP-VL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeeccc-Cc-CCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 78888888643 33 33334457777755 54432 444444 5667999998888764 344669999999974
Q ss_pred C
Q 001521 563 H 563 (1061)
Q Consensus 563 ~ 563 (1061)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
No 276
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.79 E-value=2.6 Score=38.40 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
+.+.+...++..-......++-||.+.+ |++ ...|+.+.-...+.|||...|++.-.+...+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 6677777777755443334588999876 553 3355555545568999999998776655557899999999653
No 277
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=84.65 E-value=11 Score=33.27 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccc
Q 001521 669 TDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTL 747 (1061)
Q Consensus 669 ~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l 747 (1061)
++-.|+++++++.+ .|.-.. -.+..|++.|++++. .+..|+|.||=.|.- .+.|-..+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~R--------------slCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDWR--------------SLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecch--------------hhhhheeeEhhhh
Confidence 56789999999877 565543 357889999998874 567899999977642 2566667777774
Q ss_pred cCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 748 ETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 748 ~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
..+ ...+|. ..|.+..+++|
T Consensus 73 ~~~----~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 73 RHE----VQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ccc----ceeccc--------cccEEEEEEEe
Confidence 322 233442 23778777777
No 278
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.52 E-value=4.5 Score=39.45 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred EeeccCCC-CCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCC----ceeEEEEEECcc
Q 001521 40 KTHTAVRD-LNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRN----NFLGRIRLSSSQ 99 (1061)
Q Consensus 40 ~T~~~~~t-lnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d----~~lG~~~v~l~~ 99 (1061)
.|....-+ .++.|||.+.|.+.-.+...+..|.|.||+.+.. ... ..||.+.++|-+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~---~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK---KKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS---TTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC---CccccceeEEEEEEEEeEC
Confidence 56555555 7999999999987554443468999999998766 233 689999999877
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.37 E-value=5.9 Score=36.03 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=46.6
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
+.+.+....+.... .....++.||++.+ |++.. .|+.+. -...+.|||-+.|++. .|.+..|.|.+|+.
T Consensus 13 ~~~~~~~~~~~~l~-~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLN-WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcc-cccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 56667777777654 33333688988877 55433 343332 4556899998888764 34466999999986
Q ss_pred cC
Q 001521 562 QH 563 (1061)
Q Consensus 562 d~ 563 (1061)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 43
No 280
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=82.56 E-value=9.1 Score=41.59 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCcEEEEEECCeeeeeccccCCCCc--eeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCe
Q 001521 335 HYLFVRVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCF--EWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGF 412 (1061)
Q Consensus 335 ~~L~V~v~~a~~L~~~~dPyv~v~~~~~~~kT~~~~~t~nP--~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~ 412 (1061)
-.|-|.|.+-.++.....-|++++.|...++|..+.-+..= .-++.....++.- ...|.|.|+-+.. .+..-
T Consensus 58 F~LLVeI~EI~~i~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc--DnTLkI~lfKKkL----vkk~h 131 (508)
T PTZ00447 58 FYLLVKINEIFNINKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC--DETLRVDLFTTKL----TKKVH 131 (508)
T ss_pred eeEEEEehhhhccccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec--CceEEEEEEeccc----cceeE
Confidence 45778888888888888999999999999999655432222 4456666666665 6899999998865 68888
Q ss_pred eEEEEEECcc-cCCCCCCCCCCCCeeEEccCCCccccceEEEEE
Q 001521 413 LGGICFDVTE-IPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATW 455 (1061)
Q Consensus 413 lG~~~i~L~~-l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~ 455 (1061)
||.+.+++.. +..+ .--.++||.+...+...+.|.|+..
T Consensus 132 IgdI~InIn~dIIdk----~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 132 IGQIKIDINASVISK----SFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred EEEEEecccHHHHhc----cCCccceEEEecCCceeeeEEEEeh
Confidence 9999999874 4442 2224799999877667788888654
No 281
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=82.15 E-value=3.7 Score=40.03 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=42.8
Q ss_pred EEeCCeEE-----EecccCCC-CCCccccEEEEEEe--c--CCcEEEEEEEeCCCCCCCCCCCCCCCCCC----cceEEE
Q 001521 675 AKYASKWI-----RTRTVSDS-LEPRWNEQYTWKVY--D--PCTVLALGVFDSWGIFEGENGSMETTRPD----CRIGKV 740 (1061)
Q Consensus 675 ~~~~~~~~-----rT~~~~~~-~~P~wne~~~~~v~--~--~~~~l~i~v~d~~~~~~~~~~~~~~~~~d----~~lG~~ 740 (1061)
++.|++.+ .|..+.-+ .++.|||.+.|++. + ..+.|.|+||..+... .. ..||.+
T Consensus 10 ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----------~~~~~~~~lgw~ 78 (142)
T PF00792_consen 10 LYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----------KSKKKKVPLGWV 78 (142)
T ss_dssp EEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----------TT--EEEEEEEE
T ss_pred EEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----------ccccceeEEEEE
Confidence 33566543 45555555 79999999999986 2 3489999999976643 12 689999
Q ss_pred EEEcccc
Q 001521 741 RIRISTL 747 (1061)
Q Consensus 741 ~i~l~~l 747 (1061)
.++|=+.
T Consensus 79 n~~lFd~ 85 (142)
T PF00792_consen 79 NLPLFDY 85 (142)
T ss_dssp EEESB-T
T ss_pred EEEeECC
Confidence 9987665
No 282
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.75 E-value=25 Score=35.40 Aligned_cols=104 Identities=12% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCcEEEEEECCe-EEEeeccC--CCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccce
Q 001521 25 TSSPYVVIDYYGQ-RRKTHTAV--RDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFV 101 (1061)
Q Consensus 25 ~~dPyv~v~~~~~-~~~T~~~~--~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~ 101 (1061)
+..-|+++.++++ ..+|+... .+..=.++|.|.+.+...+ +.|.++||..... ++..|+++.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P----esi~l~i~E~~~~----~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP----ESIKLEIYEKSGL----SDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC----CEEEEEEEEccCc----cceEEEEEEeeCCCCc
Confidence 4466999999884 45555442 2333457899999998876 7899999998864 5889999999976532
Q ss_pred ec---CceeeEEEeccccC-------------------CCCeeeeEEEEEEEEEeCC
Q 001521 102 KK---GEEALIYYPLEKKS-------------------LLSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 102 ~~---~~~~~~w~~L~~~~-------------------~~~~~~G~l~l~~~~~~~~ 136 (1061)
.. ......|+...... ......|.|.+++.|....
T Consensus 108 ~~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~ 164 (168)
T PF15625_consen 108 VHTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE 164 (168)
T ss_pred ccccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence 22 11023344432211 1123569999999988754
No 283
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=77.79 E-value=48 Score=33.87 Aligned_cols=60 Identities=10% Similarity=0.188 Sum_probs=42.5
Q ss_pred eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECc
Q 001521 37 QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98 (1061)
Q Consensus 37 ~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~ 98 (1061)
..++|.+...+.+|.|+|++.+.+...... ...|.|++++...... .....+|-+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k-~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDK-GEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccC-CCCCceEEEEEeec
Confidence 367899999999999999999988775422 5789998888554311 11245676666663
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.02 E-value=11 Score=38.67 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECcc
Q 001521 38 RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 38 ~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
.+.|.+..++.+|.|+|+|.+.+..... .+..|.|++++...-....++..+|-+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~-~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLF-PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCC-TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhc-ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4677788888999999999998876542 257999999996654210112577777777665
No 285
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=71.96 E-value=17 Score=36.56 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=53.1
Q ss_pred CCCcEEEEEeCCeEE-EecccC--CCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEc
Q 001521 668 TTDAYVVAKYASKWI-RTRTVS--DSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744 (1061)
Q Consensus 668 ~~dpyv~~~~~~~~~-rT~~~~--~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l 744 (1061)
+..-|+++.++++.+ +|+... ....-.||+.|.+.+...-..|.|.||..... .+..|+++.+|+
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~------------~~~~la~v~vpv 103 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL------------SDRLLAEVFVPV 103 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc------------cceEEEEEEeeC
Confidence 345688999999887 554433 33445568999999987668999999997763 388999999997
Q ss_pred ccccC
Q 001521 745 STLET 749 (1061)
Q Consensus 745 ~~l~~ 749 (1061)
-....
T Consensus 104 P~~~~ 108 (168)
T PF15625_consen 104 PGSTV 108 (168)
T ss_pred CCCcc
Confidence 66543
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=68.75 E-value=13 Score=34.24 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=52.1
Q ss_pred EEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCC----CCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceec
Q 001521 29 YVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQV----FTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 29 yv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~----~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
||.+.+-. +.+.|.++. ..||.+|-+-.|.|...+.. .+..+.|+++..-.. ....+|.+.+++..+++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~----d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS----DFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-----EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC----CeEEEEEEEeechhhhcC
Confidence 56666644 667777776 78999999999988765321 246789999886532 468999999999998754
Q ss_pred Cc-eeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 104 GE-EALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 104 ~~-~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
.. ....-..|.+. .+..-|.|.+.+.+..
T Consensus 77 ~~~~i~~~~~l~g~--~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 77 NGERIHGSATLVGV--SGEDFGTLEYWIRLRV 106 (107)
T ss_dssp -S--EEEEEEE-BS--SS-TSEEEEEEEEEEE
T ss_pred CCceEEEEEEEecc--CCCeEEEEEEEEEecC
Confidence 43 33333444433 2336788888887653
No 287
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=68.66 E-value=47 Score=34.06 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=40.8
Q ss_pred eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCC---ceeEEEEEEC
Q 001521 37 QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRN---NFLGRIRLSS 97 (1061)
Q Consensus 37 ~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d---~~lG~~~v~l 97 (1061)
..++|.+...+.+|.|+|++.+.+..... .+..|.|++++..... ++| ..+|-+.++|
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~--~kd~~e~pfg~s~lpL 113 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNE--AKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhC-CCeEEEEEEEeecccc--ccCCCCCceEEEEEee
Confidence 46788888888999999999998876542 2679999998865431 123 3455555554
No 288
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=67.42 E-value=7 Score=48.29 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=79.1
Q ss_pred CCCCcEEEEEeCCeEE-EecccCCC-CCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEc
Q 001521 667 STTDAYVVAKYASKWI-RTRTVSDS-LEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744 (1061)
Q Consensus 667 g~~dpyv~~~~~~~~~-rT~~~~~~-~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l 744 (1061)
...++|+.+.+....+ +|..+.+. -+|.|++.|.....+....+++.|-+.+..|. ...+|.++++.
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~-----------s~~w~~v~~s~ 204 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGW-----------SKRWGRVKISF 204 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccc-----------eeEEEEeccch
Confidence 3479999999888776 88888887 88999999988888888999999999877652 56999999999
Q ss_pred ccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEe
Q 001521 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 745 ~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 781 (1061)
..+..+.....|+++.....+-..+.-.+.+.+.|..
T Consensus 205 ~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 205 LQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred hhhhccccccceeeeeccCCccccCCcccceEEeeEe
Confidence 9998877778899887654433222123444455543
No 289
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=66.82 E-value=17 Score=37.12 Aligned_cols=60 Identities=5% Similarity=-0.005 Sum_probs=35.2
Q ss_pred eeeeeccccCCCCceeeeEEEEeccC--CCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcc
Q 001521 362 SRVESKPARRTSCFEWDQTFAFGRDS--PESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTE 422 (1061)
Q Consensus 362 ~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~ 422 (1061)
..+.|.+...+.+|.|+|+|-+.+.. .. ..-|.+++++...+..-.++..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~-~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFP-KHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCT-TEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcc-cEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35678888999999999999887633 33 78999999996542111112789999999986
No 290
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=66.10 E-value=46 Score=36.43 Aligned_cols=112 Identities=12% Similarity=0.224 Sum_probs=77.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCe--eeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPT--WNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~--W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|-|.|.+-.++ .-...-|+.++.|...++|..+.-+..-+ -.+.....+...+ .+|++.||-..-.
T Consensus 60 LLVeI~EI~~i-----~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcD----nTLkI~lfKKkLv--- 127 (508)
T PTZ00447 60 LLVKINEIFNI-----NKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCD----ETLRVDLFTTKLT--- 127 (508)
T ss_pred EEEEehhhhcc-----ccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecC----ceEEEEEEecccc---
Confidence 55666665555 23457899999999999997775444433 3455666666654 7899999988776
Q ss_pred CCCceeEEEEEECcc-ceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 85 TRNNFLGRIRLSSSQ-FVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~-l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
+..-||.+.+.+.. +....-...+||-+.+.+ +..+.|.+++.-+.
T Consensus 128 -kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG---q~~cRIqLSFhKL~ 174 (508)
T PTZ00447 128 -KKVHIGQIKIDINASVISKSFPKNEWFVCFKDG---QEICKVQMSFYKIQ 174 (508)
T ss_pred -ceeEEEEEEecccHHHHhccCCccceEEEecCC---ceeeeEEEEehhhh
Confidence 46789999999874 555444456799986543 45777777766444
No 291
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.92 E-value=1.9 Score=51.47 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceec
Q 001521 25 TSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 25 ~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
.-+||+.|.+.- +...+.+...+..|.|+++|.+.+.. +..+.|.|+..... ..+.+..++++..+++...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-----~~~~~i~v~~~~~~---~~~~~~a~~~~~~e~~k~~ 98 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-----GGAKNIIVLLKSPD---PKALSEAQLSLQEESQKLL 98 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-----CCceEEEEEecCCc---chhhHHHhHHHHHHHHHHH
Confidence 458999998865 33355557889999999999999776 36788999987755 4566666666666654432
Q ss_pred CceeeEEEeccccCCCCeeeeEEEEEEEEEeCCC
Q 001521 104 GEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVP 137 (1061)
Q Consensus 104 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 137 (1061)
.....-|..+++ .|.+...+.+....+
T Consensus 99 ~~~~~~w~~~~~-------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 99 ALEQRLWVLIEE-------LGTLLKPAALTGTLE 125 (694)
T ss_pred hhhhhhcccccc-------ccceeeeecccCcCC
Confidence 223445876544 577777777666433
No 292
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=64.76 E-value=30 Score=40.55 Aligned_cols=120 Identities=15% Similarity=0.230 Sum_probs=80.0
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
.++|.|.+.+||... ..+-=.||.+...+.+..|.... ..-|.|..+=.|.-.+|.-++++.+|.+....
T Consensus 342 smevvvmevqglksv-----apnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestgv---- 411 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV-----APNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV---- 411 (1218)
T ss_pred eeeEEEeeecccccc-----CCCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeeccee----
Confidence 467888999999643 22345799999999988887654 44699999888888888889999999876432
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
-.-.|.-||+|.+.-..-.... ..|+.+...++..... =.|.|+++...+
T Consensus 412 ----laledkelgrvil~ptpns~ks--~ewh~mtvpknsqdqd-lkiklavrmdkp 461 (1218)
T KOG3543|consen 412 ----LALEDKELGRVILQPTPNSAKS--PEWHTMTVPKNSQDQD-LKIKLAVRMDKP 461 (1218)
T ss_pred ----EEeechhhCeEEEecCCCCcCC--ccceeeecCCCCcCcc-ceEEEEEeccCC
Confidence 0025889999988533222222 4577665443322211 346667666544
No 293
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=62.68 E-value=9.8 Score=43.78 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=38.2
Q ss_pred ceEEEEEEccc-ccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecCCc
Q 001521 736 RIGKVRIRIST-LETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPT 785 (1061)
Q Consensus 736 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~~~ 785 (1061)
.+|+|.||+.. +..+...+.|||+......+... |.| |.++|+...++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~-~~l-lk~~~~~~~VL 49 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGE-GLI-IKVSSEENFVL 49 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCc-ceE-EEEEeeeceec
Confidence 48999999999 67777778999998876555444 888 89999887666
No 294
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=58.68 E-value=16 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=33.5
Q ss_pred ECcccCCCCCCCCCCCCeeEEccCC----CccccceEEEEEEeccCCCCC
Q 001521 419 DVTEIPLRDPPDSPLAPQWYRMEGG----GAYSGDLMLATWVGTQADDSF 464 (1061)
Q Consensus 419 ~L~~l~~~~~~~~~~~~~w~~L~~~----~~~~G~i~l~~~~~~~~d~~~ 464 (1061)
|++.+.. +|++.+.++|..|.+. ...+|++.+++.+-.+.|+..
T Consensus 2 DlgtVY~--qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~ 49 (72)
T PF08151_consen 2 DLGTVYN--QPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPP 49 (72)
T ss_pred ceeeeec--CCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCC
Confidence 5566666 4679999999999876 357899999988776666644
No 295
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=58.23 E-value=46 Score=30.65 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=48.3
Q ss_pred EEEEEeCC-eEEEecccCCCCCCccccEEEEEEecC--------CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEE
Q 001521 672 YVVAKYAS-KWIRTRTVSDSLEPRWNEQYTWKVYDP--------CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRI 742 (1061)
Q Consensus 672 yv~~~~~~-~~~rT~~~~~~~~P~wne~~~~~v~~~--------~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i 742 (1061)
||.+.+-. +..-|.++. ..+|.+|-.-.|.|.-. ...+.|+++... + .....||.+.|
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g----------~d~~tla~~~i 68 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--G----------SDFETLAAGQI 68 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---S----------S-EEEEEEEEE
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--c----------CCeEEEEEEEe
Confidence 56666433 444555554 89999998877777621 278999999865 2 14779999999
Q ss_pred EcccccC--CcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 743 RISTLET--GKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 743 ~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
++..+-. +........|.... |. ..|.|...++..
T Consensus 69 ~l~~ll~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 69 SLRPLLESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp --SHHHH--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred echhhhcCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 9999863 22334455554332 22 459998887765
No 296
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=58.08 E-value=24 Score=40.42 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHH---HHHHhcccCCChhHHHHHHHHHHHHHHHHhh
Q 001521 975 RVQTLLGDFAAQG---ERVQALVTWRDPRATGIFVGLCFVVAMILYL 1018 (1061)
Q Consensus 975 ~vQ~~l~~va~~~---E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~ 1018 (1061)
++-..|+.+-.++ +++-++++|++|..|..+++++..+++..++
T Consensus 14 ~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 14 RLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 3444556666666 8999999999998776655555555444443
No 297
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=52.40 E-value=39 Score=40.81 Aligned_cols=60 Identities=27% Similarity=0.438 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccC
Q 001521 978 TLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRD 1040 (1061)
Q Consensus 978 ~~l~~va~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~ 1040 (1061)
.++=-++.+...|.-|-+|++|+.|..|+.+-+++.++=+++|.-+++|+.- +.+|..|.
T Consensus 103 tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~l---i~~P~~r~ 162 (642)
T PF11696_consen 103 TVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIAL---ILSPPARS 162 (642)
T ss_pred ehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccccc
Confidence 3444556666778888899999999999998888888888888766655543 34455554
No 298
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=52.05 E-value=32 Score=35.09 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=41.6
Q ss_pred eeeeeccccCCCCceeeeEEEEec--cCCCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECc
Q 001521 362 SRVESKPARRTSCFEWDQTFAFGR--DSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVT 421 (1061)
Q Consensus 362 ~~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~ 421 (1061)
..++|-+.+.+.+|.|+|++-+.+ .... ..-|.+++++.-... -.....+|.+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~-k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKD-KGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCC-CeeEEEEEEEeeecc-CCCCCceEEEEEeec
Confidence 367899999999999999998876 3445 889999888853310 011256777777764
No 299
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=51.56 E-value=1.5 Score=51.13 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=52.9
Q ss_pred cEEEEEEEEeecCCC---------CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCC
Q 001521 335 HYLFVRVVKARFLPT---------KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGD 405 (1061)
Q Consensus 335 ~~L~V~v~~a~~L~~---------~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~ 405 (1061)
++....++.|.+++. ..++++...++.+.++|+....+.+|+|||. +|.+.+.+....
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~------------ 346 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRY------------ 346 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHH------------
Confidence 344455666666643 7899999999999999999999999999998 666666541111
Q ss_pred CCCCCCeeEEEEEECcc
Q 001521 406 VAAPPGFLGGICFDVTE 422 (1061)
Q Consensus 406 ~~~~d~~lG~~~i~L~~ 422 (1061)
....++|.+.++|.+
T Consensus 347 --l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 347 --LGNKIVGYCELDLND 361 (975)
T ss_pred --Hhhhccccccccccc
Confidence 245567777776665
No 300
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=51.49 E-value=92 Score=32.00 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=40.2
Q ss_pred EEEecccCCCCCCccccEEEEEEec---CCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcc
Q 001521 681 WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIS 745 (1061)
Q Consensus 681 ~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~ 745 (1061)
..+|.+.+.+.+|.|+|.+.+.+.- ...-|.++++....... .++ ....+|-.-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~---kd~----~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEA---KDK----SEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccc---cCC----CCCceEEEEEeee
Confidence 4588888999999999999998872 34678888877543210 000 1346888888875
No 301
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=50.30 E-value=1.4e+02 Score=34.18 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCCcEEEEEeCCeEEEecccC--C--CCC-Cccc-c--EEEEEEe------c-C-----CcEEEEEEEeCCCCCCCCCCC
Q 001521 668 TTDAYVVAKYASKWIRTRTVS--D--SLE-PRWN-E--QYTWKVY------D-P-----CTVLALGVFDSWGIFEGENGS 727 (1061)
Q Consensus 668 ~~dpyv~~~~~~~~~rT~~~~--~--~~~-P~wn-e--~~~~~v~------~-~-----~~~l~i~v~d~~~~~~~~~~~ 727 (1061)
.+-+||.|++.+-..+|..+- . +.+ |.-+ - .|.++-. . + ...|+|.||-.....
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~------ 108 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGS------ 108 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCC------
Confidence 467899999998877666553 1 111 1111 1 3333321 1 1 157999999855422
Q ss_pred CCC-CCCCcceEEEEEEcccccCCc-----EEeeEEeceecCCCCCc-cccEEEEEEEEEecC
Q 001521 728 MET-TRPDCRIGKVRIRISTLETGK-----VYRNTYPLLLLGSNGMT-KMGEIEVAVRFIRTS 783 (1061)
Q Consensus 728 ~~~-~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~-~~G~i~l~~~f~~~~ 783 (1061)
.+. +..-.+||+++|+|. ++... .+.-|..+-..+.++.+ ...+|+|.++-+++.
T Consensus 109 tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 109 TCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred cccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 111 124679999999987 33222 45678877655332221 236899999888774
No 302
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=48.82 E-value=3.2e+02 Score=31.37 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=56.9
Q ss_pred CCeEEEEEECCeeeeeeeeec---CCCCC-cccc---eeEEeec------cC-----CCCeEEEEEEeccC-------CC
Q 001521 511 ASFTIKAQLGFQVQKTKVSVT---RNGTP-SWNE---DLLFVAA------EP-----FTDQLSFTLENRQH-------KG 565 (1061)
Q Consensus 511 ~dpyv~v~lg~~~~kT~~~~~---~t~nP-~wne---~f~f~v~------~~-----~~~~L~i~V~D~d~-------~~ 565 (1061)
+..||+|+|.+...+|..+.= .+.++ .-+. .|++.-. .+ ....|+|.||.-.. ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 467999999887777774431 11121 1111 3443311 11 01479999998543 35
Q ss_pred CceeEEEEEeccccccccccccccceEEEcccCCCc-cCCccceEEEEEEe
Q 001521 566 SVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDE-KRAYKGRVHLRLCF 615 (1061)
Q Consensus 566 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~-~~~~~G~i~l~i~l 615 (1061)
..+||.+.|+|.---........+..|+.+-+.... ......+++|.+..
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~ 166 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRA 166 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEec
Confidence 689999999987221111111346779888663221 12234566665543
No 303
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=46.10 E-value=59 Score=33.03 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=35.7
Q ss_pred EeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC--CCCCceeEEEEEECc
Q 001521 40 KTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP--TTRNNFLGRIRLSSS 98 (1061)
Q Consensus 40 ~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~--~~~d~~lG~~~v~l~ 98 (1061)
-|.++....+|.|+|++.+.+.... .....|.|++++-+.-.. ......+|-+.++|-
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l-~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADL-TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCcc-CCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 3444444489999999999885433 236799999999664410 012345555555544
No 304
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=42.75 E-value=75 Score=37.47 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=69.5
Q ss_pred EEEEEEEEeecCCC---CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCe
Q 001521 336 YLFVRVVKARFLPT---KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGF 412 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~---~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~ 412 (1061)
.+.|.|.+..+|.. ..=-||...+.|.+.+|.-.. ...|.|+..-.|...++ -..+.+.+|....+.....|+-
T Consensus 342 smevvvmevqglksvapnrivyctmevegeklqtdqae-askp~wgtqgdfstthp--lpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP--LPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeeEEEeeeccccccCCCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC--CceeEEEEEeecceeEEeechh
Confidence 46677888888865 444699999999888887654 45699999999998887 6788888888654211235667
Q ss_pred eEEEEEECcccCCCCCCCCCCCCeeEEccC
Q 001521 413 LGGICFDVTEIPLRDPPDSPLAPQWYRMEG 442 (1061)
Q Consensus 413 lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~ 442 (1061)
+|++.+-- .|++...+.|+.+.-
T Consensus 419 lgrvil~p-------tpns~ks~ewh~mtv 441 (1218)
T KOG3543|consen 419 LGRVILQP-------TPNSAKSPEWHTMTV 441 (1218)
T ss_pred hCeEEEec-------CCCCcCCccceeeec
Confidence 78776632 234566678887653
No 305
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.73 E-value=73 Score=29.34 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001521 959 NEIVRARYDKLRTLGAR 975 (1061)
Q Consensus 959 ~~~~~~~~~~l~~~~~~ 975 (1061)
.+++..++.+|+.++..
T Consensus 38 ~e~L~~kV~aLKsLs~d 54 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLD 54 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778888888887663
No 306
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.24 E-value=2.4e+02 Score=29.99 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhh
Q 001521 982 DFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVP 1020 (1061)
Q Consensus 982 ~va~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP 1020 (1061)
++...+-.++.++.=+|+..+..+.+.+++.+.+..+.-
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn 170 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFN 170 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 566666677777778888888888888887777764433
No 307
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=37.27 E-value=28 Score=43.27 Aligned_cols=83 Identities=7% Similarity=0.087 Sum_probs=67.3
Q ss_pred CCcEEEEEECC-eeeeeccccCC-CCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcccCCCCC
Q 001521 351 GSPVVKIAVAN-SRVESKPARRT-SCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDP 428 (1061)
Q Consensus 351 ~dPyv~v~~~~-~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~~~ 428 (1061)
.++|+.+.+.. ...+|..+.+. .+|.|.+.|+...... ...+.+.|.+.+. .+.-..+|.+.++...+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~---~G~s~~w~~v~~s~~~~~~--- 209 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV---PGWSKRWGRVKISFLQYCS--- 209 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc---ccceeEEEEeccchhhhhc---
Confidence 58999999988 56678777676 8999999999988887 6889999988877 4558899999999988887
Q ss_pred CCCCCCCeeEEccCC
Q 001521 429 PDSPLAPQWYRMEGG 443 (1061)
Q Consensus 429 ~~~~~~~~w~~L~~~ 443 (1061)
......|+++-+.
T Consensus 210 --~~~~~~~~~Il~~ 222 (887)
T KOG1329|consen 210 --GHRIGGWFPILDN 222 (887)
T ss_pred --cccccceeeeecc
Confidence 3556788887543
No 308
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=36.52 E-value=99 Score=31.39 Aligned_cols=44 Identities=7% Similarity=0.163 Sum_probs=34.1
Q ss_pred eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCC
Q 001521 37 QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAY 81 (1061)
Q Consensus 37 ~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~ 81 (1061)
....|.+...+.+|.|+|++.+.+...... ...|.|+.++-+.-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~-~hHLlFtF~Hvs~~ 97 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTD-NHHLLFTFYHISCQ 97 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCC-CeEEEEEEEEeecc
Confidence 356788888899999999999888765322 57899999996543
No 309
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=33.97 E-value=1.3e+02 Score=30.81 Aligned_cols=43 Identities=7% Similarity=0.194 Sum_probs=33.9
Q ss_pred eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 37 QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 37 ~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
....|.+..++.+|.|.|++.+.+...... ...|.|+.|+-+.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~-~hHLlFtFyHvsc 98 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHE-KHHLLFTFYHVSC 98 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCC-CeeEEEEEEeecc
Confidence 466788888889999999998887765322 5789999999653
No 310
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=32.60 E-value=49 Score=38.21 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001521 852 RKVRANWFRIINVLAGVID 870 (1061)
Q Consensus 852 ~~~~~N~~Rl~~~~~~~~~ 870 (1061)
+.+..|...|.....-++.
T Consensus 192 ~~l~~n~~~L~~~~~~~~~ 210 (395)
T cd05137 192 QIIEHNWERLISLTEEIWK 210 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788877776554433
No 311
>PF14851 FAM176: FAM176 family
Probab=32.07 E-value=1.9e+02 Score=28.47 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhccccCCchhhHHHHHHHH
Q 001521 867 GVIDILRWADDTRSWKNPTATILVHALLV 895 (1061)
Q Consensus 867 ~~~~~~~~i~~l~~W~~P~~T~~~~~~~~ 895 (1061)
...+...+| |.+|-+.++.|+.-+
T Consensus 7 nsLaaya~I-----~~~PE~~aLYFv~gV 30 (153)
T PF14851_consen 7 NSLAAYAHI-----RDNPERFALYFVSGV 30 (153)
T ss_pred HHHHHHHHH-----HhChHHHHHHHHHHH
Confidence 344555555 888988777655433
No 312
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=31.28 E-value=80 Score=38.42 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHhhhcC
Q 001521 977 QTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVA---MILYLVPSKMVAMAFGFYYLRH 1035 (1061)
Q Consensus 977 Q~~l~~va~~~E~~~nl~~w~~P~~t~~~~~~l~~~~---~vl~~iP~r~i~l~~g~~~l~~ 1035 (1061)
+.+|-=+..++..++.+..|.+|..|..|+++.+.+. .+.|++|.-+++++.+....|+
T Consensus 493 kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 493 KELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566778888999999999999977665444333 2456677766666655544444
No 313
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=30.82 E-value=1.2e+02 Score=30.74 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCCCcccceeEEeeccCC--CCeEEEEEEeccC------CCCceeEEEEEeccc
Q 001521 532 RNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQH------KGSVALGVTRVPLTA 578 (1061)
Q Consensus 532 ~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~d~------~~d~~lG~~~i~l~~ 578 (1061)
...+|.|+|+|.+.++... ...|.|++++... .....+|.+.+||-+
T Consensus 61 ~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 61 YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3489999999988776554 4589999988653 225577777777664
No 314
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.90 E-value=2.3e+02 Score=35.52 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHhh
Q 001521 1004 IFVGLCFVVAMI-LYLVPSKMVAMAFGFYY 1032 (1061)
Q Consensus 1004 ~~~~~l~~~~~v-l~~iP~r~i~l~~g~~~ 1032 (1061)
+|+++.+.+-++ ++|||.+||+|+.-.|+
T Consensus 78 ~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 78 FFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333344 44599999998855553
No 315
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=29.03 E-value=4.4e+02 Score=26.37 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=55.4
Q ss_pred EEEEEEeecCCCCCCcEEEEEEC---------C-e-eeeeccccC-----CCCceeeeEEEEecc--CCCCCCeEEEEEE
Q 001521 338 FVRVVKARFLPTKGSPVVKIAVA---------N-S-RVESKPARR-----TSCFEWDQTFAFGRD--SPESSSFLEVSVW 399 (1061)
Q Consensus 338 ~V~v~~a~~L~~~~dPyv~v~~~---------~-~-~~kT~~~~~-----t~nP~Wne~f~f~v~--~~~~~~~L~i~V~ 399 (1061)
.-.|..|.+.. ..+-||+..+. + . ...|.+.+. +..-.||.-|++... .+.....|.|+|+
T Consensus 5 ~G~I~~a~~f~-~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~ 83 (168)
T PF07162_consen 5 IGEIESAEGFE-EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVY 83 (168)
T ss_pred EEEEEEEECCC-CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEE
Confidence 34577888776 44668876651 1 2 455555432 344679998887753 3331589999999
Q ss_pred cCCCCCCCCCCCeeEEEEEECc
Q 001521 400 DPPRGDVAAPPGFLGGICFDVT 421 (1061)
Q Consensus 400 d~d~~~~~~~d~~lG~~~i~L~ 421 (1061)
..|. ++++.+.|+..+.|-
T Consensus 84 ~~D~---~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 84 SLDS---WGRDRVEGYGFCHLP 102 (168)
T ss_pred EEcc---cCCeEEeEEeEEEeC
Confidence 9998 889999999888763
No 316
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=28.16 E-value=3.6e+02 Score=26.15 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCCCCcEEEEEECCeeeeeccccCCCCceeeeEEEEec------------cCCCCCCeEEEEEEcCCCCCCCCCCCeeEE
Q 001521 348 PTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGR------------DSPESSSFLEVSVWDPPRGDVAAPPGFLGG 415 (1061)
Q Consensus 348 ~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v------------~~~~~~~~L~i~V~d~d~~~~~~~d~~lG~ 415 (1061)
+.+.|-|..|.+-|+.++|+...-.-==.++|.|.|.. ..++ .+.+.|+++-... .....|+.
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le-~e~~~iELiQl~~----~~g~iLA~ 91 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLE-DETVYIELIQLVP----PAGEILAY 91 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhh-cCcEEEEEEEEeC----CCCcEEEE
Confidence 34788999999999999998865332224799999873 2233 7788888887644 23778888
Q ss_pred EEEECcccCC
Q 001521 416 ICFDVTEIPL 425 (1061)
Q Consensus 416 ~~i~L~~l~~ 425 (1061)
..-++.|+..
T Consensus 92 ye~n~rDfLf 101 (140)
T PF14909_consen 92 YEENTRDFLF 101 (140)
T ss_pred EeccccceEc
Confidence 8888888776
No 317
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=28.07 E-value=2e+02 Score=29.24 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=29.4
Q ss_pred eeeeeeeeecCCCCCcccceeEEeeccCC--CCeEEEEEEecc
Q 001521 522 QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQ 562 (1061)
Q Consensus 522 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~d 562 (1061)
....|.+.. .+.+|.|+|++-+.++... ...|.|+.+...
T Consensus 54 ~~~~S~V~y-Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTY-HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEE-eCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 345666777 8999999999987766554 347888888754
No 318
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=27.87 E-value=4.2e+02 Score=25.66 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=57.8
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCC-cccceeEEeeccC------------CCCeEEEE
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTP-SWNEDLLFVAAEP------------FTDQLSFT 557 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP-~wne~f~f~v~~~------------~~~~L~i~ 557 (1061)
|.|+-+.|-|.-.. ..-|.|..|.+-++..+|+... ..=| .|+|.|.|.-..+ ..+.+.++
T Consensus 4 L~i~aVTCPGv~L~----~~~~vyL~v~~lg~~~~T~~~p--pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC----DKGDVYLSVCILGQYKRTRCLP--PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEecCCeEeC----CCCCEEEEEEEcccEeecccCC--CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 45555555554333 3468999999999999998664 2333 4688887753222 23478888
Q ss_pred EEeccCCCCceeEEEEEeccccc
Q 001521 558 LENRQHKGSVALGVTRVPLTAVE 580 (1061)
Q Consensus 558 V~D~d~~~d~~lG~~~i~l~~l~ 580 (1061)
++.+....+..|+..+-+++++.
T Consensus 78 LiQl~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 78 LIQLVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EEEEeCCCCcEEEEEeccccceE
Confidence 88876644788888888888865
No 319
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=27.63 E-value=16 Score=43.01 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCC
Q 001521 23 HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAY 81 (1061)
Q Consensus 23 ~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~ 81 (1061)
.-+.+|++...++.+.++|+....+.+|+|||. .+.+.+.+. ...|...|.+++.+
T Consensus 302 ~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqs--n~~l~~kiv~~~~~ 357 (975)
T KOG2419|consen 302 LFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQS--NRYLGNKIVGYCEL 357 (975)
T ss_pred ccCCCchheeecchhhhhhhhhccccccccccc-ccccccchh--hHHHhhhccccccc
Confidence 346789999999999999999999999999997 666555432 34455555555555
No 320
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.53 E-value=1.8e+02 Score=25.59 Aligned_cols=37 Identities=11% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhH
Q 001521 965 RYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRA 1001 (1061)
Q Consensus 965 ~~~~l~~~~~~vQ~~l~~va~~~E~~~nl~~w~~P~~ 1001 (1061)
+++.+.+.+..++..-..+...-.+++.-.-|+.=..
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~ 68 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555556666666666765433
No 321
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=6e+02 Score=25.01 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=46.9
Q ss_pred CCCCcEEEEEE--CC--------e---EEEeeccCCCCCC-eeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCce
Q 001521 24 GTSSPYVVIDY--YG--------Q---RRKTHTAVRDLNP-TWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNF 89 (1061)
Q Consensus 24 g~~dPyv~v~~--~~--------~---~~~T~~~~~tlnP-~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~ 89 (1061)
--+|-||+.++ ++ + .+.|.-.+.-.|| +||=-++..++...-..=..|.+.||..|-+ ++|..
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~---G~d~v 100 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHS---GKDCV 100 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcC---Cccee
Confidence 35688888876 21 1 1222222233455 6887777776665434346799999999988 68988
Q ss_pred eEEEEEECcc
Q 001521 90 LGRIRLSSSQ 99 (1061)
Q Consensus 90 lG~~~v~l~~ 99 (1061)
.|-..+.+--
T Consensus 101 ~GYg~~hiP~ 110 (187)
T KOG4027|consen 101 TGYGMLHIPT 110 (187)
T ss_pred eeeeeEecCc
Confidence 8877776543
No 322
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=27.36 E-value=1.3e+02 Score=37.65 Aligned_cols=107 Identities=20% Similarity=0.340 Sum_probs=66.1
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEE----eCCeEE----EecccCCCCCCccccEEEEEEecC----CcEEEEE
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAK----YASKWI----RTRTVSDSLEPRWNEQYTWKVYDP----CTVLALG 713 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~----~~~~~~----rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~ 713 (1061)
.++++++++.++ +.....|-+|.|. .|++.. .|.-+....+|.||+...|+++-. .+.|.|.
T Consensus 344 ~frI~l~~is~~------n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~ 417 (1076)
T KOG0904|consen 344 PFRIKLVGISKV------NLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLA 417 (1076)
T ss_pred ceEEEEeecccc------CCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheee
Confidence 578888888766 3444567777666 455443 455555588999999999988732 3778888
Q ss_pred EEeCCCC-CCC----CCCCCCCCCCCcceEEEEEEccc----ccCCcEEeeEEe
Q 001521 714 VFDSWGI-FEG----ENGSMETTRPDCRIGKVRIRIST----LETGKVYRNTYP 758 (1061)
Q Consensus 714 v~d~~~~-~~~----~~~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~ 758 (1061)
||-.-.. .++ +.+.+.....+..||-|.+.|-+ |..|+..-+-++
T Consensus 418 i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~ 471 (1076)
T KOG0904|consen 418 IYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWP 471 (1076)
T ss_pred eeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecC
Confidence 8875211 110 11222233467789999888765 455664333334
No 323
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.34 E-value=1.7e+02 Score=27.26 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHH
Q 001521 967 DKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRAT 1002 (1061)
Q Consensus 967 ~~l~~~~~~vQ~~l~~va~~~E~~~nl~~w~~P~~t 1002 (1061)
+.|++-+..+|..-..+-...-+++--+-|.+-...
T Consensus 60 ~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 60 DELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444555555556666778776654
No 324
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=27.10 E-value=1.1e+02 Score=38.18 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=49.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE----CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY----YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~----~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
.-++|+++.+.++.- ....|-+|.|.. |++ ...|+-+..+.+|.||+.++|.+.-.+......|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 457888888776632 234577777765 442 345555665789999999999987666544678888888
Q ss_pred eC
Q 001521 77 HD 78 (1061)
Q Consensus 77 d~ 78 (1061)
--
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 74
No 325
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.71 E-value=47 Score=40.24 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=39.4
Q ss_pred CCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCC
Q 001521 350 KGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPP 402 (1061)
Q Consensus 350 ~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d 402 (1061)
..+||+.|.+.- +...+.+.+.+..|.|+++|...+.. ...+.|.|++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~---~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA---GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec---CCceEEEEEecC
Confidence 458888888876 34456667889999999999999766 668889998863
No 326
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=25.41 E-value=23 Score=35.39 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=0.0
Q ss_pred HHhcccCCChhHHHHHHHHHHHHHHHHhh
Q 001521 990 VQALVTWRDPRATGIFVGLCFVVAMILYL 1018 (1061)
Q Consensus 990 ~~nl~~w~~P~~t~~~~~~l~~~~~vl~~ 1018 (1061)
+++++.|++|..|..++.++.++.+++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~ 29 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWL 29 (169)
T ss_dssp -----------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHH
Confidence 46789999999998877766664444433
No 327
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=25.25 E-value=30 Score=42.67 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=55.8
Q ss_pred ccEEEEEEEEeecCCCCCCcEEEEEECC-----eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCC
Q 001521 334 MHYLFVRVVKARFLPTKGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPR 403 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~ 403 (1061)
++.+.|.+.+|..|.....-||...+.. -+.+|+++.+|..|.||+.|+..+... +.+.|..++++.
T Consensus 758 ygflh~~vhsat~lkqs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeeccccccccccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcccc
Confidence 7889999999999998888899987754 477899999999999999999998874 455566777654
No 328
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=23.56 E-value=6.1e+02 Score=25.35 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=53.6
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEE---------CC-e-EEEeeccCC-----CCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 9 VEVVDARNLLPKDGHGTSSPYVVIDY---------YG-Q-RRKTHTAVR-----DLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 9 V~v~~a~~L~~~d~~g~~dPyv~v~~---------~~-~-~~~T~~~~~-----tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
=.|..|.+. ...+-||+-.+ .+ . ...|.+... +-.-.||--|++.+.......-..|.
T Consensus 6 G~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 367778765 23467888776 12 3 455555533 23457998888776655433236899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECc
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSS 98 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~ 98 (1061)
|+||..|.. +++...|=..+.|-
T Consensus 80 l~V~~~D~~---gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 80 LQVYSLDSW---GRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEccc---CCeEEeEEeEEEeC
Confidence 999999999 67888866665553
No 329
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=22.27 E-value=41 Score=41.58 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=50.9
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
|.+.+.+++|..|+. ...-||...+. ..+.+|+++.+|..|.||++|+..+-.. +.+++.+++.+
T Consensus 759 gflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-----qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 759 GFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-----QSSRLEKTEKS 828 (1112)
T ss_pred cceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-----cccchhhhccc
Confidence 667888888888743 34679887662 2678999999999999999999888764 34557777765
Q ss_pred CC
Q 001521 80 AY 81 (1061)
Q Consensus 80 ~~ 81 (1061)
.-
T Consensus 829 ~~ 830 (1112)
T KOG4269|consen 829 TP 830 (1112)
T ss_pred ch
Confidence 43
No 330
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=22.16 E-value=3.1e+02 Score=28.04 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=29.1
Q ss_pred eeeeeeeeecCCCCCcccceeEEeeccCC--CCeEEEEEEecc
Q 001521 522 QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQ 562 (1061)
Q Consensus 522 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~d 562 (1061)
....|.+.. .+.+|.|+|++-+.++... ...|.|+.+...
T Consensus 56 ~~~~s~V~y-h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLH-HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEE-cCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 345666777 8899999999877665443 447888888754
No 331
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=21.92 E-value=6.8e+02 Score=23.66 Aligned_cols=90 Identities=8% Similarity=0.014 Sum_probs=55.6
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEec---CCcEEEEEEEeCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIF 721 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~d~~~~~ 721 (1061)
.|.+.=+.-.+++.+ +.+|.+.||+.|.-++..+ .|........-.=...+.+.+.. ..-.+.|.+|+.....
T Consensus 5 ~l~L~~I~l~~iP~f---~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNF---NSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTS---TTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCcc---CCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 455555555677665 5677899999999998887 33333222111111233333331 2367899999977422
Q ss_pred CCCCCCCCCCCCCcceEEEEEEccccc
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLE 748 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~ 748 (1061)
...+.+.++.+.-.=+.
T Consensus 82 ----------~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 ----------MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ----------CCCEEEEEEEEEGGGSB
T ss_pred ----------cccCeEEEEEEeeeeee
Confidence 13668999999988887
No 332
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.22 E-value=4.6e+02 Score=26.80 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHhhccCCCCcc--------chHHHHHHHHHHHH
Q 001521 811 QEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAF--------SMRKVRANWFRIIN 863 (1061)
Q Consensus 811 ~~~lr~~~~~~~~~~l~~~epp~~~~vv~~~ld~~~~~f--------s~~~~~~N~~Rl~~ 863 (1061)
.+..-+.+++.+...++...|+ .| ++| ...| -..+.+.|+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~lst~RpW--~e----f~d--~~~fs~P~s~s~a~sRi~~Nl~yF~~ 71 (187)
T KOG3142|consen 19 VESISSRAKQTIQSGLSTRRPW--SE----FFD--RSAFSRPRSLSDATSRIKRNLSYFRV 71 (187)
T ss_pred hhhHHHHHHHHHHHHHhccCCH--HH----HHc--ccccCCCccHHHHHHHHHHHHHHHHH
Confidence 4445555666677777776662 22 544 3334 24556666666554
No 333
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.53 E-value=5.1e+02 Score=21.74 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001521 964 ARYDKLRTLGARVQTLLGDFAAQGERVQALVTW 996 (1061)
Q Consensus 964 ~~~~~l~~~~~~vQ~~l~~va~~~E~~~nl~~w 996 (1061)
++.+.+.......+..+..++..++++.+...|
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445566678889999999999999
Done!