BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001522
(1060 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7XUZ6|SKIT6_MOUSE Selection and upkeep of intraepithelial T-cells protein 6 OS=Mus
musculus GN=Skint6 PE=2 SV=1
Length = 1240
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 176 ELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235
E KE+ L+ I+S IE + K S+QS IE+ +LE+K L + IK SI
Sbjct: 278 EKKERLLKIIQSRIESSSVDQETKALLLESIQSSIENSTVDLETKVWLLESIKSSIQNSS 337
Query: 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295
+ K+ LE ++SI +++L +E LES+Q ++ +L +K+ L ++ ++
Sbjct: 338 VDPETKELLLERIKSSIENSTVDLGTKEWLLESIQSSIQSSSVDLGTKKMLLKIIQSSIQ 397
Query: 296 KYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEF 343
+ I KE ++ I+ S +L KE L+ +Q S+EG E
Sbjct: 398 SFSVYIGTKEWLLERVQSSIQSSSVDLGTKELLLEIIQSSIEGYSVEL 445
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 44/366 (12%)
Query: 44 DLEEHLDISMKSL----EKQSNDADSKIRLLDQRAKEIESKESD-----LVL--AERRIK 92
DLE+ D+ +KS+ + S D + K RLL IES D L+L + I+
Sbjct: 255 DLEKK-DMLLKSIKSRFQSSSVDPEKKERLLKIIQSRIESSSVDQETKALLLESIQSSIE 313
Query: 93 ECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVE---------EWLEKLDLK 143
+L K LE ++ I + + KE L +K S+E EWL +
Sbjct: 314 NSTVDLETKVWLLESIKSSIQNSSVDPETKELLLERIKSSIENSTVDLGTKEWLLESIQS 373
Query: 144 MKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHA 203
+ V+ K L+ + +++ I+ F I KE L +++SSI+ +L KE
Sbjct: 374 SIQSSSVDLGTKKMLL--KIIQSSIQSFSVYIGTKEWLLERVQSSIQSSSVDLGTKELLL 431
Query: 204 SSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEE 263
+QS IE Y+ EL +E L I SI L K+ +++ Q+SI S+
Sbjct: 432 EIIQSSIEGYSVELGIEELLSKIILSSIQSSRVDLGIKELLVKICQSSIQSTSV------ 485
Query: 264 EKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323
LE+ + +V++ ++ + S L+ +K + + I+ + I+ +
Sbjct: 486 -ILETKEWLVKIFQSNIQSSSMDLETKVWLVKFFQSSIQSSSMDLGTIKWLV-------- 536
Query: 324 LKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSD 383
K VQ +++ R + E K L ++ I S KK L VI++S S
Sbjct: 537 ------KNVQSNIQSSRVDLETKRMLLEIIQSSIQNSSVHRGTKKMLLKVIQSSIQSFSV 590
Query: 384 ECESNE 389
+ E+ E
Sbjct: 591 DLETKE 596
>sp|P02564|MYH7_RAT Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=2 SV=2
Length = 1935
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 58/377 (15%)
Query: 114 ECECELQLKEG-------ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD--QRRL 164
E E L+ +EG E N +K +E L + D +M++ K N +VD Q L
Sbjct: 1546 EAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQA----KRNHLRVVDSLQTSL 1601
Query: 165 ENLIKDFCEQIELKEK---DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
+ + E + +K+K DL ++ + + +K SLQSL++D +L+
Sbjct: 1602 DAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAV 1661
Query: 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281
+ D++K++I E + + + ELE + + E +R +L E EL
Sbjct: 1662 RANDDLKENIAIVERRNNLLQAELEELRAVV--------------EQTERSRKLAEQELI 1707
Query: 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRN 341
E++ + + N +K+ + L + Q + V+E+++ CRN
Sbjct: 1708 ETSERVQLLHSQNTSLIN----------------QKKKMDADLSQLQTE-VEEAVQECRN 1750
Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
EEK + I+ ++ +EEL+ ++ +E + + + LD + +A
Sbjct: 1751 A-EEKAKKAITDAAMM---AEELKKEQDTSAHLERMKNNMEQTIKDLQHRLDEAEQIA-- 1804
Query: 402 YLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKN 461
LK +KQ L+ + E +LE ++++ E VK E+ I+ + E+ KN
Sbjct: 1805 ----LKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKN 1860
Query: 462 LELKEKKLSNNLHLQVK 478
L L+ + L + L L+VK
Sbjct: 1861 L-LRLQDLVDKLQLKVK 1876
>sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2
Length = 1935
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 166/377 (44%), Gaps = 58/377 (15%)
Query: 114 ECECELQLKEG-------ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD--QRRL 164
E E L+ +EG E N +K +E L + D +M++ K N +VD Q L
Sbjct: 1546 EAEASLEHEEGKILRAQLEFNQIKAEMERKLAEKDEEMEQA----KRNHLRVVDSLQTSL 1601
Query: 165 ENLIKDFCEQIELKEK---DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
+ + E + +K+K DL ++ + + +K SLQSL++D +L+
Sbjct: 1602 DAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAV 1661
Query: 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281
+ D++K++I E + + + ELE + + E +R +L E EL
Sbjct: 1662 RANDDLKENIAIVERRNNLLQAELEELRAVV--------------EQTERSRKLAEQELI 1707
Query: 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRN 341
E++ + + N +K+ E L + Q + V+E+++ CRN
Sbjct: 1708 ETSERVQLLHSQNTSLIN----------------QKKKMEADLSQLQTE-VEEAVQECRN 1750
Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
EEK + I+ ++ +EEL+ ++ +E + + + LD + +A
Sbjct: 1751 A-EEKAKKAITDAAMM---AEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIA-- 1804
Query: 402 YLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKN 461
LK +KQ L+ + E +LE ++++ E VK E+ I+ + E+ KN
Sbjct: 1805 ----LKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKN 1860
Query: 462 LELKEKKLSNNLHLQVK 478
L L+ + L + L L+VK
Sbjct: 1861 L-LRLQDLVDKLQLKVK 1876
>sp|Q9BE39|MYH7_BOVIN Myosin-7 OS=Bos taurus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 166/377 (44%), Gaps = 58/377 (15%)
Query: 114 ECECELQLKEG-------ELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD--QRRL 164
E E L+ +EG E N +K +E L + D +M++ K N +VD Q L
Sbjct: 1546 EAEASLEQEEGKILRAQLEFNQIKAEMERKLAEKDEEMEQA----KRNHLRVVDSLQTSL 1601
Query: 165 ENLIKDFCEQIELKEK---DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221
+ + E + +K+K DL ++ + + +K SLQSL++D +L+
Sbjct: 1602 DAETRSRNEALRVKKKMEGDLNEMEIQLSHANRLAAEAQKQVKSLQSLLKDTQIQLDDAV 1661
Query: 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281
+ D++K++I E + + + ELE + + E +R +L E EL
Sbjct: 1662 RANDDLKENIAIVERRNNLLQAELEELRAVV--------------EQTERSRKLAEQELI 1707
Query: 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRN 341
E++ + + N +K+ E L + Q + V+E+++ CRN
Sbjct: 1708 ETSERVQLLHSQNTSLIN----------------QKKKMEADLSQLQTE-VEEAVQECRN 1750
Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
EEK + I+ ++ +EEL+ ++ +E + + + LD + +A
Sbjct: 1751 A-EEKAKKAITDAAMM---AEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIA-- 1804
Query: 402 YLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKN 461
LK +KQ L+ + E +LE ++++ E VK E+ I+ + E+ KN
Sbjct: 1805 ----LKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKN 1860
Query: 462 LELKEKKLSNNLHLQVK 478
L L+ + L + L L+VK
Sbjct: 1861 L-LRLQDLVDKLQLKVK 1876
>sp|Q640L5|CCD18_MOUSE Coiled-coil domain-containing protein 18 OS=Mus musculus GN=Ccdc18
PE=2 SV=1
Length = 1455
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 36/266 (13%)
Query: 210 IEDYAEELESKEKLYDEIKKS-------IIQCETKLDCKKKELELTQTSIIELS-LELHL 261
++ Y EEL EK +K+ + Q + LD K ELE T S+ EL L+ H
Sbjct: 874 MDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELERLQHHT 933
Query: 262 EEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQE 321
E E E++Q K +A++ E++ +++ R+ +R ++K
Sbjct: 934 ETELTETMQ---------------KREALENELQNAHGELKSTLRQLQELRDVLQKAQLS 978
Query: 322 LTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAEL 381
L K +K + L C+ E E+K+ ELI +++ + + + EL+ + + ++ + E
Sbjct: 979 LEEKYTTIKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREH 1038
Query: 382 SDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE---------- 431
E E ++L+ T+ L +LKE KQ SL E L + L KE
Sbjct: 1039 RGEMEQKIIKLE--GTLEKSEL-ELKECNKQVESLNEKLQNAKEQLREKEFIMLQNEQEI 1095
Query: 432 RKFEERVKEFELREKEIESIRKAVED 457
+ ++ ++ + R KE+ES+ K ED
Sbjct: 1096 SQLKKEIERTQQRMKEMESVIKEQED 1121
>sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein 2 OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=hmw2 PE=1 SV=1
Length = 1818
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 192/406 (47%), Gaps = 70/406 (17%)
Query: 78 ESKESDLVLAERRIKE--CNFELACKEKQLELV--RKRIGECECELQLKEGELNL-VKKS 132
+ KE+DL++ E+++++ +FE +EKQ EL +K + + +L+ KE ELN +K
Sbjct: 511 DQKENDLLIFEKQLRQYQADFENEIEEKQNELFASQKSLQKSFTQLKNKEAELNQKAQKI 570
Query: 133 VEEWL-------EKLDLKM---KEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDL 182
E+W DL++ E +++ K L + + +N + + + K+ +L
Sbjct: 571 AEDWAHLKQNKHHHADLEIFLEGEFNHLQQEKHKLLEARTQFDNRVSLLSARFKQKQAEL 630
Query: 183 RKIRSSIEEC------EKELVMKEKHASSLQSLIEDYAEELESKEKLYDE----IKKSII 232
K + S+E+ E+E V E+ + +E E L K +DE I K +
Sbjct: 631 VKQKQSLEQLTAAFNKEQEAV--ERDWKDRLANLEKQKEMLGDKVHQFDENSLNISKKLA 688
Query: 233 QCETKLDCKKKELELTQTSIIELSLE------LHLEEEKLESLQRIVRLRENELD-SKEE 285
+ E + K+KELE Q +LSL+ L L+ +KL + RL EL+ SKE
Sbjct: 689 ERELAIKFKEKELEAAQK---QLSLDNNNNAGLKLQLDKLSESLKTERL---ELEASKER 742
Query: 286 KLDAMKEEMKK---YFNDIELKEREFNGIRKCIEKRSQELTLK-EKQLKCVQESLEGCRN 341
LD E ++ Y +D++ + E K +EK QE K E++LK E L +
Sbjct: 743 ILDFYDESSRRIADYESDLQARLAEV----KTLEKNQQETAAKSERELKVALEKLNQAKK 798
Query: 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIG 401
F + I ++L++ S + +L +K +++N AEL + E ELE
Sbjct: 799 AFLQ-----IRKQQLLEIASVKQQLAQK-ANLLKNQQAELDKQTE--ELE--------AA 842
Query: 402 YLKQ---LKEKEKQFHSLK---EALDERWQDLEIKERKFEERVKEF 441
+L+Q KE EK HS+K E L+ L K+R+F E V F
Sbjct: 843 FLEQDTDKKELEKALHSVKSKQELLERERSFLLQKQREFAEHVAGF 888
>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1
PE=1 SV=1
Length = 1120
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 107/454 (23%), Positives = 210/454 (46%), Gaps = 65/454 (14%)
Query: 21 LRRSYDLAHAQANSVLNFTVQWKDLEE---HLDISMKSLEKQSNDADSKIRLLDQRAKEI 77
L++ L +A+ + + Q++ ++E H+ +++++L+ + +L Q +
Sbjct: 194 LKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSR 253
Query: 78 ESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWL 137
+ L E + + E + K+L L+RK + E E ++ ++ LN +S+++ L
Sbjct: 254 TGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLL 313
Query: 138 EKLDLKMKEVGLVEKSNDKSLVDQRRL---ENLIKDFCEQIELKEKDLRKIRSSIEECEK 194
E L K GL K+ ++ RRL E + +E KEK+ +R EE +
Sbjct: 314 EMLQSK----GLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLR---EEMHR 366
Query: 195 --ELVMKEKHASSLQSLIEDYAEELESKEK----LYDEIKKSIIQCETKLDCKKKELELT 248
E +LQ++IE ++ S E+ L +EI+ +++ L +++E E+
Sbjct: 367 RFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ--MLKSNGALSSEEREEEMK 424
Query: 249 QTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREF 308
Q +E++ K ++ +L+E EL SK DA EE+KK
Sbjct: 425 Q-------MEVYRSHSKFMK-NKVEQLKE-ELSSK----DAQGEELKKR----------A 461
Query: 309 NGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKK 368
G++ I + QEL+ K+ +L +Q LE N+F + + +E+ K
Sbjct: 462 AGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSD--------------SKQHIEVLK 507
Query: 369 KHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKE--KEK-----QFHSLKEALD 421
+ L E AA L E ++ L L+ +TM KQ+++ +EK + H LK+ LD
Sbjct: 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLD 567
Query: 422 ERWQDLEIKERKFEERVKEFELREKEIESIRKAV 455
+ + + + ++K E ++ +EK++ S+++ V
Sbjct: 568 VKERKVNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,686,815
Number of Sequences: 539616
Number of extensions: 16625462
Number of successful extensions: 121980
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 4055
Number of HSP's that attempted gapping in prelim test: 81065
Number of HSP's gapped (non-prelim): 19598
length of query: 1060
length of database: 191,569,459
effective HSP length: 128
effective length of query: 932
effective length of database: 122,498,611
effective search space: 114168705452
effective search space used: 114168705452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)