Query 001522
Match_columns 1060
No_of_seqs 118 out of 132
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 1.7E-77 3.6E-82 650.4 27.6 279 488-921 8-289 (290)
2 PF07899 Frigida: Frigida-like 99.7 6.2E-17 1.3E-21 177.6 15.9 171 681-907 41-219 (290)
3 PRK02224 chromosome segregatio 99.2 2.8E-05 6E-10 96.9 59.0 85 162-246 317-401 (880)
4 PRK02224 chromosome segregatio 99.1 0.00012 2.5E-09 91.4 58.0 78 35-116 215-292 (880)
5 KOG0161 Myosin class II heavy 98.7 0.0042 9.1E-08 83.0 57.7 133 58-193 901-1040(1930)
6 TIGR02169 SMC_prok_A chromosom 98.7 0.00026 5.6E-09 89.7 45.2 7 1017-1023 1075-1081(1164)
7 TIGR02169 SMC_prok_A chromosom 98.7 0.00062 1.4E-08 86.3 48.5 8 1027-1034 1142-1149(1164)
8 TIGR00606 rad50 rad50. This fa 98.7 0.0042 9.2E-08 81.5 54.4 116 242-357 887-1007(1311)
9 TIGR00606 rad50 rad50. This fa 98.7 0.0072 1.6E-07 79.4 60.4 97 17-113 516-629 (1311)
10 TIGR02168 SMC_prok_B chromosom 98.6 0.0012 2.7E-08 83.3 47.4 21 422-442 1000-1020(1179)
11 KOG0161 Myosin class II heavy 98.6 0.0089 1.9E-07 80.0 55.6 51 37-87 815-867 (1930)
12 PRK03918 chromosome segregatio 98.6 0.0074 1.6E-07 75.5 59.8 44 84-127 233-276 (880)
13 TIGR02168 SMC_prok_B chromosom 98.6 0.0019 4.1E-08 81.7 46.2 6 537-542 1114-1119(1179)
14 COG1196 Smc Chromosome segrega 98.4 0.0066 1.4E-07 78.9 47.1 25 420-444 982-1006(1163)
15 COG1196 Smc Chromosome segrega 98.4 0.0046 1E-07 80.3 44.1 17 897-913 993-1009(1163)
16 KOG0995 Centromere-associated 98.2 0.032 6.9E-07 66.9 41.8 156 203-371 362-522 (581)
17 KOG0933 Structural maintenance 98.1 0.037 8E-07 69.6 41.4 42 592-633 1072-1115(1174)
18 PF10174 Cast: RIM-binding pro 97.9 0.15 3.2E-06 64.1 50.9 112 117-228 308-419 (775)
19 PF00261 Tropomyosin: Tropomyo 97.8 0.03 6.4E-07 60.8 28.2 37 295-331 133-169 (237)
20 PF00261 Tropomyosin: Tropomyo 97.7 0.062 1.3E-06 58.3 29.4 82 318-399 114-195 (237)
21 KOG0996 Structural maintenance 97.6 0.51 1.1E-05 60.8 40.9 98 209-316 374-471 (1293)
22 KOG0971 Microtubule-associated 97.5 0.57 1.2E-05 58.9 58.8 235 162-411 227-479 (1243)
23 KOG4674 Uncharacterized conser 97.5 1 2.2E-05 60.8 53.7 205 186-390 1152-1391(1822)
24 KOG4674 Uncharacterized conser 97.4 1.1 2.4E-05 60.6 51.8 58 5-65 678-735 (1822)
25 KOG0933 Structural maintenance 97.4 0.75 1.6E-05 58.6 50.9 62 49-110 324-385 (1174)
26 KOG0995 Centromere-associated 97.4 0.63 1.4E-05 56.3 37.2 36 404-439 492-527 (581)
27 KOG0976 Rho/Rac1-interacting s 97.4 0.79 1.7E-05 57.1 39.1 166 160-325 100-278 (1265)
28 COG0419 SbcC ATPase involved i 97.3 1.1 2.4E-05 57.5 57.4 24 63-86 230-253 (908)
29 KOG0250 DNA repair protein RAD 97.2 1.4 3E-05 56.8 51.8 131 88-225 322-460 (1074)
30 KOG1029 Endocytic adaptor prot 97.2 0.62 1.3E-05 57.9 31.6 23 150-172 369-391 (1118)
31 KOG0962 DNA repair protein RAD 97.1 1.8 3.9E-05 56.9 48.2 119 76-199 618-766 (1294)
32 PF10174 Cast: RIM-binding pro 97.1 1.4 3.1E-05 55.7 54.2 232 84-317 109-368 (775)
33 KOG0612 Rho-associated, coiled 97.0 2.1 4.5E-05 55.8 40.7 47 158-204 559-608 (1317)
34 PHA02562 46 endonuclease subun 97.0 1 2.2E-05 53.9 31.6 71 163-236 178-248 (562)
35 PRK11637 AmiB activator; Provi 97.0 0.6 1.3E-05 54.7 28.9 44 295-338 169-212 (428)
36 KOG0250 DNA repair protein RAD 96.9 2.5 5.5E-05 54.6 53.5 188 81-268 273-461 (1074)
37 COG0419 SbcC ATPase involved i 96.9 2.6 5.6E-05 54.2 59.1 16 314-329 563-578 (908)
38 PHA02562 46 endonuclease subun 96.8 1.5 3.1E-05 52.6 30.1 10 533-542 495-504 (562)
39 PF07888 CALCOCO1: Calcium bin 96.7 2.6 5.7E-05 51.4 43.1 16 427-442 436-451 (546)
40 KOG0964 Structural maintenance 96.5 4.2 9.2E-05 52.1 37.2 52 342-396 443-494 (1200)
41 KOG0996 Structural maintenance 96.5 5.1 0.00011 52.3 54.7 76 163-238 476-551 (1293)
42 KOG0612 Rho-associated, coiled 96.5 5.3 0.00011 52.4 38.9 52 48-99 469-521 (1317)
43 PF05483 SCP-1: Synaptonemal c 96.4 4.2 9.1E-05 50.5 54.4 33 196-228 365-397 (786)
44 PF05667 DUF812: Protein of un 96.3 4.3 9.4E-05 50.2 30.9 73 166-238 408-484 (594)
45 PF12128 DUF3584: Protein of u 96.3 7.2 0.00016 51.9 60.1 68 41-110 303-373 (1201)
46 PRK04863 mukB cell division pr 96.0 10 0.00023 51.5 40.6 41 863-907 1207-1248(1486)
47 KOG0018 Structural maintenance 95.8 9.4 0.0002 49.6 34.1 34 604-637 1055-1088(1141)
48 PF12128 DUF3584: Protein of u 95.8 11 0.00024 50.2 66.1 55 19-73 242-296 (1201)
49 PF05483 SCP-1: Synaptonemal c 95.8 7.8 0.00017 48.3 55.1 24 164-187 375-398 (786)
50 KOG1029 Endocytic adaptor prot 95.5 11 0.00023 47.7 33.6 88 306-393 472-566 (1118)
51 PF07888 CALCOCO1: Calcium bin 95.2 11 0.00024 46.2 42.2 35 337-371 367-401 (546)
52 KOG0976 Rho/Rac1-interacting s 95.1 14 0.0003 46.8 43.9 43 175-217 254-296 (1265)
53 COG1579 Zn-ribbon protein, pos 94.8 3.2 6.9E-05 46.0 19.9 105 169-273 55-161 (239)
54 PRK04778 septation ring format 94.8 14 0.0003 45.4 48.8 20 117-136 154-173 (569)
55 KOG0964 Structural maintenance 94.8 19 0.0004 46.7 41.6 33 412-444 981-1013(1200)
56 COG1579 Zn-ribbon protein, pos 94.8 6.5 0.00014 43.6 22.0 19 302-320 134-152 (239)
57 PF00038 Filament: Intermediat 94.7 9 0.00019 42.8 35.4 84 53-138 6-89 (312)
58 COG4942 Membrane-bound metallo 94.5 14 0.0003 44.1 26.3 65 180-244 38-102 (420)
59 PRK04863 mukB cell division pr 94.5 28 0.00061 47.6 42.6 20 897-916 1213-1232(1486)
60 KOG4673 Transcription factor T 94.4 19 0.00041 45.1 33.8 183 165-353 401-595 (961)
61 KOG4673 Transcription factor T 94.4 19 0.00041 45.1 35.9 38 211-248 405-442 (961)
62 PF09726 Macoilin: Transmembra 94.0 18 0.00039 45.8 26.2 26 206-231 550-575 (697)
63 KOG0971 Microtubule-associated 93.8 28 0.0006 44.9 39.5 22 896-917 1027-1048(1243)
64 COG5185 HEC1 Protein involved 93.3 24 0.00053 42.6 29.1 32 207-238 402-433 (622)
65 PF05701 WEMBL: Weak chloropla 93.0 28 0.0006 42.6 50.0 25 249-273 210-234 (522)
66 PF05701 WEMBL: Weak chloropla 92.8 29 0.00064 42.4 49.7 52 320-371 295-346 (522)
67 KOG0962 DNA repair protein RAD 92.7 49 0.0011 44.5 46.2 48 62-109 699-746 (1294)
68 PF15619 Lebercilin: Ciliary p 92.6 17 0.00037 39.1 23.6 25 283-307 169-193 (194)
69 TIGR03185 DNA_S_dndD DNA sulfu 92.5 35 0.00077 42.5 38.4 27 28-55 171-197 (650)
70 KOG0980 Actin-binding protein 91.2 58 0.0013 42.2 25.9 114 175-288 398-511 (980)
71 KOG0979 Structural maintenance 91.1 62 0.0013 42.5 25.9 44 203-246 313-356 (1072)
72 PF12718 Tropomyosin_1: Tropom 90.8 21 0.00045 36.7 17.6 64 165-228 34-100 (143)
73 PF06160 EzrA: Septation ring 90.8 50 0.0011 40.8 44.2 69 371-443 353-421 (560)
74 PF09726 Macoilin: Transmembra 90.8 58 0.0013 41.5 26.6 60 213-272 458-517 (697)
75 PF15254 CCDC14: Coiled-coil d 90.7 26 0.00056 44.5 21.1 181 21-280 358-538 (861)
76 KOG0977 Nuclear envelope prote 90.3 55 0.0012 40.5 30.1 127 102-228 91-224 (546)
77 TIGR03319 YmdA_YtgF conserved 90.3 53 0.0012 40.3 28.9 39 503-543 223-267 (514)
78 COG1340 Uncharacterized archae 90.2 40 0.00087 38.7 34.0 9 119-127 39-47 (294)
79 PF10473 CENP-F_leu_zip: Leuci 89.7 27 0.00059 36.0 17.9 79 160-238 11-89 (140)
80 KOG0979 Structural maintenance 89.6 82 0.0018 41.4 25.5 31 824-854 761-793 (1072)
81 PF07035 Mic1: Colon cancer-as 89.5 0.76 1.6E-05 48.2 6.3 81 765-849 45-130 (167)
82 PF08317 Spc7: Spc7 kinetochor 89.2 24 0.00053 40.4 18.5 12 140-151 133-144 (325)
83 TIGR03319 YmdA_YtgF conserved 89.2 56 0.0012 40.1 22.3 12 743-754 478-489 (514)
84 PF05557 MAD: Mitotic checkpoi 88.9 1.3 2.8E-05 55.4 8.8 33 177-209 271-303 (722)
85 PF08317 Spc7: Spc7 kinetochor 88.8 33 0.00071 39.4 19.1 28 179-206 215-242 (325)
86 COG2433 Uncharacterized conser 88.3 9.5 0.00021 47.1 14.9 50 36-86 330-379 (652)
87 PF05667 DUF812: Protein of un 88.1 82 0.0018 39.5 35.5 60 166-225 321-380 (594)
88 COG4942 Membrane-bound metallo 88.0 68 0.0015 38.6 24.9 7 532-538 336-342 (420)
89 PF01576 Myosin_tail_1: Myosin 87.9 0.16 3.4E-06 64.7 0.0 12 563-574 519-530 (859)
90 PRK12704 phosphodiesterase; Pr 87.7 33 0.00071 42.1 19.2 8 295-302 172-179 (520)
91 KOG0243 Kinesin-like protein [ 87.1 1.2E+02 0.0026 40.3 30.4 270 166-441 404-694 (1041)
92 COG5185 HEC1 Protein involved 86.7 86 0.0019 38.2 29.6 173 78-276 252-429 (622)
93 PF10186 Atg14: UV radiation r 86.6 36 0.00079 37.2 17.3 30 205-234 74-103 (302)
94 KOG0018 Structural maintenance 86.4 1.3E+02 0.0028 40.0 47.4 29 757-785 1054-1082(1141)
95 PF12718 Tropomyosin_1: Tropom 86.3 43 0.00093 34.4 18.7 25 298-322 110-134 (143)
96 PF13851 GAS: Growth-arrest sp 85.3 59 0.0013 35.1 19.9 104 188-302 35-138 (201)
97 TIGR03185 DNA_S_dndD DNA sulfu 85.0 1.1E+02 0.0025 38.2 37.8 16 532-547 572-587 (650)
98 PF05622 HOOK: HOOK protein; 84.4 0.31 6.6E-06 60.8 0.0 36 119-154 286-324 (713)
99 PRK00106 hypothetical protein; 84.3 1.2E+02 0.0025 37.7 29.0 25 503-529 244-268 (535)
100 PF04949 Transcrip_act: Transc 84.3 40 0.00086 35.3 14.8 43 280-322 86-128 (159)
101 PF10186 Atg14: UV radiation r 83.6 74 0.0016 34.9 18.1 7 266-272 142-148 (302)
102 PF10481 CENP-F_N: Cenp-F N-te 83.0 62 0.0013 37.0 16.7 116 159-274 18-133 (307)
103 PF13863 DUF4200: Domain of un 82.6 44 0.00096 32.6 14.1 44 99-149 3-46 (126)
104 COG4372 Uncharacterized protei 82.6 1.2E+02 0.0025 36.4 30.9 45 248-292 229-273 (499)
105 PRK04778 septation ring format 82.6 1.3E+02 0.0029 37.1 47.6 28 87-114 145-172 (569)
106 PLN03106 TCP2 Protein TCP2; Pr 82.1 2.2 4.8E-05 49.3 5.5 79 974-1055 306-396 (447)
107 PF10473 CENP-F_leu_zip: Leuci 81.8 69 0.0015 33.2 17.5 37 237-273 46-82 (140)
108 KOG0963 Transcription factor/C 81.5 1.6E+02 0.0034 37.1 41.0 61 81-141 14-76 (629)
109 PF05911 DUF869: Plant protein 81.2 1.8E+02 0.0039 37.7 29.1 150 81-246 23-172 (769)
110 COG1340 Uncharacterized archae 80.5 1.2E+02 0.0026 35.1 33.8 18 422-439 242-259 (294)
111 PF13851 GAS: Growth-arrest sp 80.2 92 0.002 33.7 20.4 74 326-399 99-173 (201)
112 PF10146 zf-C4H2: Zinc finger- 80.1 37 0.00081 37.6 13.9 80 194-273 4-83 (230)
113 PRK09039 hypothetical protein; 80.1 1.3E+02 0.0027 35.2 21.4 43 173-215 46-88 (343)
114 PF00038 Filament: Intermediat 79.8 1.1E+02 0.0024 34.3 37.7 62 214-275 53-114 (312)
115 COG3883 Uncharacterized protei 79.0 1.2E+02 0.0027 34.4 23.2 65 209-273 46-110 (265)
116 PF10146 zf-C4H2: Zinc finger- 78.4 45 0.00098 37.0 13.9 100 173-272 4-103 (230)
117 KOG0980 Actin-binding protein 77.9 2.3E+02 0.0051 37.1 26.4 63 205-274 456-518 (980)
118 PF05557 MAD: Mitotic checkpoi 77.9 0.7 1.5E-05 57.7 0.0 28 806-833 687-714 (722)
119 PF01576 Myosin_tail_1: Myosin 77.6 0.73 1.6E-05 58.9 0.0 59 75-133 215-273 (859)
120 COG2433 Uncharacterized conser 76.0 30 0.00065 43.0 12.6 12 111-122 389-400 (652)
121 KOG0804 Cytoplasmic Zn-finger 75.6 96 0.0021 37.6 16.1 18 307-324 329-346 (493)
122 PRK05563 DNA polymerase III su 75.0 90 0.002 38.6 16.6 153 759-915 212-389 (559)
123 KOG1003 Actin filament-coating 73.5 1.5E+02 0.0032 32.6 24.2 31 412-442 141-171 (205)
124 PF10168 Nup88: Nuclear pore c 72.7 1.5E+02 0.0033 37.9 18.2 29 326-354 684-712 (717)
125 PF09728 Taxilin: Myosin-like 72.0 2E+02 0.0042 33.3 39.5 46 286-331 136-181 (309)
126 TIGR00634 recN DNA repair prot 70.5 2.7E+02 0.0059 34.4 23.3 13 734-746 548-560 (563)
127 KOG3661 Uncharacterized conser 69.8 15 0.00033 45.8 8.2 125 929-1057 158-298 (1019)
128 PF10168 Nup88: Nuclear pore c 69.6 1.2E+02 0.0026 38.9 16.3 78 213-293 637-714 (717)
129 PF05622 HOOK: HOOK protein; 68.8 1.6 3.5E-05 54.6 0.0 24 86-109 243-266 (713)
130 KOG0804 Cytoplasmic Zn-finger 68.6 1.8E+02 0.0038 35.5 16.2 6 343-348 440-445 (493)
131 PF13166 AAA_13: AAA domain 68.3 3.2E+02 0.0069 34.3 23.3 27 34-60 256-289 (712)
132 COG4372 Uncharacterized protei 66.5 2.9E+02 0.0064 33.2 28.5 31 299-329 182-212 (499)
133 PRK10869 recombination and rep 66.5 3.3E+02 0.0072 33.8 25.5 13 734-746 538-550 (553)
134 KOG1937 Uncharacterized conser 66.1 3.2E+02 0.0069 33.5 32.9 158 168-331 233-403 (521)
135 KOG4643 Uncharacterized coiled 65.9 4.5E+02 0.0098 35.2 43.4 48 84-138 179-226 (1195)
136 COG4487 Uncharacterized protei 64.2 3.4E+02 0.0073 33.1 25.0 11 744-754 384-394 (438)
137 TIGR00634 recN DNA repair prot 63.7 3.6E+02 0.0079 33.3 25.7 11 534-544 462-472 (563)
138 PRK10869 recombination and rep 63.1 3.8E+02 0.0082 33.3 24.7 23 87-109 155-177 (553)
139 PF04111 APG6: Autophagy prote 63.1 87 0.0019 36.1 12.3 36 202-237 51-86 (314)
140 PF10481 CENP-F_N: Cenp-F N-te 62.6 1.8E+02 0.0039 33.4 14.1 87 231-317 20-106 (307)
141 PF15619 Lebercilin: Ciliary p 62.1 2.4E+02 0.0051 30.7 24.4 93 162-254 15-107 (194)
142 PF09787 Golgin_A5: Golgin sub 62.1 3.8E+02 0.0082 33.0 33.1 106 167-273 195-318 (511)
143 PRK14950 DNA polymerase III su 61.8 4E+02 0.0087 33.2 21.1 81 759-856 213-293 (585)
144 PF09787 Golgin_A5: Golgin sub 61.7 3.8E+02 0.0083 32.9 32.5 29 80-108 107-135 (511)
145 PF10498 IFT57: Intra-flagella 61.3 2.5E+02 0.0054 33.3 15.7 102 173-277 216-321 (359)
146 PRK14956 DNA polymerase III su 60.0 2.6E+02 0.0057 34.4 16.0 23 892-914 370-392 (484)
147 PF05010 TACC: Transforming ac 59.6 2.8E+02 0.006 30.6 28.1 105 163-271 6-111 (207)
148 PRK14959 DNA polymerase III su 58.4 4.9E+02 0.011 33.1 20.5 27 762-789 215-241 (624)
149 PF10508 Proteasom_PSMB: Prote 57.9 1.7E+02 0.0037 35.6 14.2 257 518-823 173-443 (503)
150 PF07083 DUF1351: Protein of u 56.9 3E+02 0.0065 30.2 15.6 90 117-225 42-132 (215)
151 PRK14952 DNA polymerase III su 53.6 1.8E+02 0.0039 36.5 13.6 18 896-913 368-385 (584)
152 KOG4572 Predicted DNA-binding 52.6 6.8E+02 0.015 33.0 21.2 35 204-238 998-1032(1424)
153 smart00787 Spc7 Spc7 kinetocho 52.6 4.3E+02 0.0094 30.7 26.1 43 216-258 205-247 (312)
154 PF06160 EzrA: Septation ring 52.2 5.6E+02 0.012 31.9 47.6 38 103-140 136-173 (560)
155 PF04949 Transcrip_act: Transc 51.9 3.2E+02 0.0069 29.0 15.5 60 361-431 83-142 (159)
156 PF15427 S100PBPR: S100P-bindi 51.9 6.8 0.00015 45.1 1.1 126 925-1057 230-385 (386)
157 KOG4302 Microtubule-associated 51.8 6.4E+02 0.014 32.4 42.2 117 242-367 20-143 (660)
158 PF08614 ATG16: Autophagy prot 50.9 1.8E+02 0.004 30.9 11.6 83 170-252 92-174 (194)
159 PF15066 CAGE1: Cancer-associa 50.8 5.7E+02 0.012 31.6 24.3 63 173-235 390-459 (527)
160 PRK09039 hypothetical protein; 50.5 4.8E+02 0.01 30.6 21.4 45 214-258 122-166 (343)
161 PF04156 IncA: IncA protein; 49.4 3.3E+02 0.0072 28.5 16.0 18 173-190 88-105 (191)
162 PF13870 DUF4201: Domain of un 49.1 3.4E+02 0.0073 28.4 21.1 70 65-134 20-94 (177)
163 PRK00409 recombination and DNA 47.5 4.7E+02 0.01 34.0 16.3 53 178-230 514-566 (782)
164 KOG0963 Transcription factor/C 46.7 7.3E+02 0.016 31.7 38.7 86 279-371 179-265 (629)
165 PF04111 APG6: Autophagy prote 46.7 2.6E+02 0.0056 32.4 12.6 7 566-572 293-299 (314)
166 TIGR01005 eps_transp_fam exopo 46.5 7.4E+02 0.016 31.6 21.2 25 361-385 375-399 (754)
167 KOG2236 Uncharacterized conser 46.3 1.1E+02 0.0023 37.3 9.6 22 895-916 321-342 (483)
168 KOG0994 Extracellular matrix g 45.9 9.8E+02 0.021 32.9 38.3 24 86-109 1461-1484(1758)
169 KOG1003 Actin filament-coating 45.8 4.6E+02 0.0099 29.0 24.8 98 200-297 101-198 (205)
170 KOG4023 Uncharacterized conser 44.1 8.3 0.00018 37.8 0.3 60 964-1038 38-102 (108)
171 PRK00409 recombination and DNA 43.9 4.4E+02 0.0096 34.3 15.3 56 218-273 512-567 (782)
172 TIGR01069 mutS2 MutS2 family p 43.9 3.1E+02 0.0067 35.6 13.9 54 220-273 509-562 (771)
173 PRK14965 DNA polymerase III su 43.4 5.1E+02 0.011 32.4 15.3 63 760-824 213-277 (576)
174 PF14726 RTTN_N: Rotatin, an a 43.4 79 0.0017 30.9 6.7 44 609-652 28-71 (98)
175 PRK12705 hypothetical protein; 42.6 7.7E+02 0.017 30.7 21.7 52 222-273 70-121 (508)
176 PF10234 Cluap1: Clusterin-ass 42.4 5.7E+02 0.012 29.4 14.1 49 357-405 199-247 (267)
177 KOG2150 CCR4-NOT transcription 41.8 8.3E+02 0.018 30.9 17.6 87 87-200 6-94 (575)
178 PF10267 Tmemb_cc2: Predicted 41.4 6.4E+02 0.014 30.5 15.0 100 215-323 219-318 (395)
179 PF10498 IFT57: Intra-flagella 41.2 6.8E+02 0.015 29.7 16.8 57 290-346 264-320 (359)
180 PF10046 BLOC1_2: Biogenesis o 41.0 3.4E+02 0.0074 26.2 11.6 63 47-109 3-65 (99)
181 KOG1103 Predicted coiled-coil 40.7 48 0.001 38.8 5.6 99 920-1038 379-480 (561)
182 KOG0307 Vesicle coat complex C 39.6 1.2E+02 0.0025 40.3 9.2 27 807-833 664-690 (1049)
183 PRK13729 conjugal transfer pil 39.5 2.7E+02 0.0058 34.3 11.6 42 870-911 79-120 (475)
184 TIGR02680 conserved hypothetic 39.3 1.2E+03 0.027 32.2 33.6 91 199-294 740-830 (1353)
185 COG4026 Uncharacterized protei 38.4 3.8E+02 0.0083 30.2 11.6 25 182-206 144-168 (290)
186 PF04849 HAP1_N: HAP1 N-termin 37.8 7.3E+02 0.016 29.1 23.3 219 77-313 71-304 (306)
187 PF12777 MT: Microtubule-bindi 37.8 7.1E+02 0.015 29.0 19.1 36 49-84 10-45 (344)
188 TIGR01069 mutS2 MutS2 family p 37.2 7E+02 0.015 32.5 15.5 49 179-227 510-558 (771)
189 PF05529 Bap31: B-cell recepto 37.1 2.3E+02 0.0049 30.0 9.6 60 170-229 122-182 (192)
190 KOG0972 Huntingtin interacting 36.4 4.5E+02 0.0098 30.7 12.1 97 124-227 230-327 (384)
191 smart00787 Spc7 Spc7 kinetocho 36.2 7.5E+02 0.016 28.8 26.1 150 216-372 64-228 (312)
192 PRK14963 DNA polymerase III su 35.8 9.3E+02 0.02 29.8 17.7 22 893-914 356-377 (504)
193 COG4487 Uncharacterized protei 35.6 9.2E+02 0.02 29.6 22.8 18 320-337 64-81 (438)
194 PF05278 PEARLI-4: Arabidopsis 35.4 7.2E+02 0.016 28.7 13.5 31 418-448 231-261 (269)
195 PF11559 ADIP: Afadin- and alp 35.1 5E+02 0.011 26.4 13.4 95 211-315 55-149 (151)
196 KOG0946 ER-Golgi vesicle-tethe 34.6 1.2E+03 0.027 30.8 29.8 34 233-266 727-760 (970)
197 KOG0994 Extracellular matrix g 34.6 1.4E+03 0.031 31.6 48.2 102 236-340 1504-1611(1758)
198 PTZ00234 variable surface prot 34.2 1.4E+02 0.0029 36.3 8.2 26 885-913 201-226 (433)
199 PRK10884 SH3 domain-containing 33.4 4E+02 0.0086 29.3 10.9 37 159-195 86-122 (206)
200 KOG1962 B-cell receptor-associ 33.4 5.3E+02 0.011 28.8 11.7 47 200-246 150-196 (216)
201 KOG2433 Uncharacterized conser 33.3 20 0.00043 42.6 1.2 56 985-1055 341-398 (577)
202 KOG0946 ER-Golgi vesicle-tethe 32.9 1.3E+03 0.028 30.6 29.9 19 181-199 619-637 (970)
203 PRK14971 DNA polymerase III su 31.5 1.2E+03 0.026 29.6 16.4 45 809-855 249-293 (614)
204 KOG4822 Predicted nuclear memb 31.5 91 0.002 41.6 6.4 14 34-47 320-333 (1906)
205 KOG1451 Oligophrenin-1 and rel 31.2 1.3E+02 0.0028 37.8 7.3 64 984-1048 730-806 (812)
206 KOG3629 Guanine-nucleotide rel 30.8 2.3E+02 0.005 35.3 9.2 44 587-630 131-174 (728)
207 PF14618 DUF4452: Domain of un 30.7 1.1E+02 0.0024 32.6 5.9 78 931-1010 75-153 (165)
208 KOG4786 Ubinuclein, nuclear pr 30.1 71 0.0015 40.5 5.0 15 794-808 752-766 (1136)
209 KOG3598 Thyroid hormone recept 29.9 91 0.002 42.5 6.1 28 762-789 1590-1618(2220)
210 PF10234 Cluap1: Clusterin-ass 29.9 9E+02 0.02 27.8 13.4 29 286-314 226-254 (267)
211 KOG4433 Tweety transmembrane/c 29.4 58 0.0012 39.7 4.0 98 789-888 249-367 (526)
212 KOG1853 LIS1-interacting prote 29.4 9.3E+02 0.02 27.8 18.4 145 202-359 28-172 (333)
213 TIGR03007 pepcterm_ChnLen poly 28.9 1.1E+03 0.023 28.4 20.2 29 373-401 352-380 (498)
214 PF02994 Transposase_22: L1 tr 28.1 1.5E+02 0.0034 34.9 7.2 31 418-448 140-170 (370)
215 PF09728 Taxilin: Myosin-like 27.8 1E+03 0.022 27.7 37.8 33 77-109 17-49 (309)
216 PF15397 DUF4618: Domain of un 25.9 1E+03 0.023 27.2 26.5 94 224-317 8-102 (258)
217 KOG4217 Nuclear receptors of t 25.9 2.1E+02 0.0044 35.2 7.6 55 940-996 141-196 (605)
218 PF15188 CCDC-167: Coiled-coil 25.4 3.1E+02 0.0067 26.5 7.3 56 174-229 6-64 (85)
219 KOG4270 GTPase-activator prote 25.3 1.1E+02 0.0024 38.3 5.6 17 763-779 278-294 (577)
220 KOG0905 Phosphoinositide 3-kin 25.0 1.6E+02 0.0034 39.8 6.9 30 970-999 139-172 (1639)
221 KOG0307 Vesicle coat complex C 24.7 2.1E+02 0.0045 38.2 7.9 16 637-652 579-594 (1049)
222 PF06818 Fez1: Fez1; InterPro 24.6 9.9E+02 0.022 26.5 16.8 147 118-278 4-166 (202)
223 KOG1451 Oligophrenin-1 and rel 24.2 2.2E+02 0.0048 35.8 7.6 57 919-975 573-637 (812)
224 PF14726 RTTN_N: Rotatin, an a 23.9 1.8E+02 0.0039 28.5 5.7 45 763-807 28-72 (98)
225 KOG0162 Myosin class I heavy c 23.7 3.4E+02 0.0074 35.2 9.1 89 516-612 521-611 (1106)
226 PRK13430 F0F1 ATP synthase sub 23.4 1.1E+03 0.024 26.7 12.8 153 733-896 71-236 (271)
227 PF05278 PEARLI-4: Arabidopsis 23.4 1.2E+03 0.026 27.0 15.0 23 359-381 156-178 (269)
228 PF15066 CAGE1: Cancer-associa 23.2 1.5E+03 0.033 28.2 23.4 48 259-306 392-443 (527)
229 COG5139 Uncharacterized conser 23.0 1.4E+02 0.003 34.6 5.3 65 539-606 210-292 (397)
230 PF03962 Mnd1: Mnd1 family; I 22.9 9.8E+02 0.021 25.8 13.1 62 164-233 67-128 (188)
231 PF05010 TACC: Transforming ac 22.7 1.1E+03 0.023 26.2 25.3 23 208-230 118-140 (207)
232 PF15290 Syntaphilin: Golgi-lo 22.7 1.3E+03 0.027 27.1 13.3 19 294-312 147-165 (305)
233 KOG4643 Uncharacterized coiled 22.7 2.1E+03 0.045 29.6 48.9 25 91-115 200-224 (1195)
234 KOG0163 Myosin class VI heavy 22.6 1.9E+03 0.041 29.1 18.7 40 161-200 870-916 (1259)
235 KOG1820 Microtubule-associated 22.5 7.1E+02 0.015 32.8 11.9 86 801-889 363-448 (815)
236 PF09738 DUF2051: Double stran 22.5 1.2E+03 0.026 27.3 12.7 10 206-215 117-126 (302)
237 PF04625 DEC-1_N: DEC-1 protei 21.2 1E+02 0.0023 35.9 4.0 13 1014-1026 179-191 (407)
238 PF05529 Bap31: B-cell recepto 21.1 5.4E+02 0.012 27.2 9.1 25 293-317 119-143 (192)
239 PRK06771 hypothetical protein; 20.8 1E+02 0.0023 30.1 3.3 35 799-833 40-77 (93)
240 KOG0977 Nuclear envelope prote 20.5 1.8E+03 0.039 28.0 32.7 47 164-210 97-143 (546)
241 PF03233 Cauli_AT: Aphid trans 20.4 2.6E+02 0.0055 30.0 6.3 58 123-185 104-161 (163)
242 PRK06305 DNA polymerase III su 20.3 1.6E+03 0.034 27.3 14.8 77 761-854 216-292 (451)
243 PF07889 DUF1664: Protein of u 20.2 9.6E+02 0.021 24.7 11.5 53 162-214 39-91 (126)
244 TIGR02680 conserved hypothetic 20.1 2.5E+03 0.054 29.5 38.8 55 163-217 337-391 (1353)
245 KOG3741 Poly(A) ribonuclease s 20.1 3.3E+02 0.0071 34.3 7.9 8 1018-1025 175-182 (655)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=1.7e-77 Score=650.45 Aligned_cols=279 Identities=42% Similarity=0.687 Sum_probs=257.8
Q ss_pred CcccchhhhhhhcccchhhHHHHHHHhhhhhhhhhhhHHHhhhhcCCchhhHHHhhhccCCCCCCCCCcccchhHhHhHh
Q 001522 488 NEGTKQLSLQSCTMITGKNLQLLLNQHLQKHDLVFGEISHTLTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTC 567 (1060)
Q Consensus 488 ~~~~~~~~~~lc~~mDgkgL~~~i~e~~k~~~~ir~Ei~~AL~~asDPAklVLDaiegf~~~~~~~~d~e~~~~~~rrsC 567 (1060)
...+++.+..+|++|||+||+.|+++|.++.+.+|+||+.||++|+|||+||||+|+|||++.++. +.+.+...+|++|
T Consensus 8 ~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~c 86 (290)
T PF07899_consen 8 EVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRAC 86 (290)
T ss_pred CcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHH
Confidence 446889999999999999999999999999999999999999999999999999999999998766 6677889999999
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q 001522 568 ILLLEQLSSVTPEINPQVRDEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKL 647 (1060)
Q Consensus 568 ilLLEqL~~isp~i~~~VkeeA~kLA~~WK~~~~~~~en~levLGFL~lla~ygL~s~FD~dEll~L~~~va~~~~ap~L 647 (1060)
|+|||+|+.++|.|+|+||++|+++|.+||++|.
T Consensus 87 ilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~---------------------------------------------- 120 (290)
T PF07899_consen 87 ILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLD---------------------------------------------- 120 (290)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 9999999999999888888888888888888772
Q ss_pred HhhhhhhhhhhcccccCccchhhhhcccccCCCChhhHHHhhhcCCCchhhHHHHHHhhhhcCCCCCccchhhhHHHHHH
Q 001522 648 RQSLGFAEKAHGLQCSTTREARSCLSLLNKHDLGHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEK 727 (1060)
Q Consensus 648 ~~~LG~~~k~~~~~cst~~~~~~~~~~l~~~~~~~~Ev~~AL~~ApDPAklVLdaV~~f~~~~~g~~~~~~~~CVLLLE~ 727 (1060)
T Consensus 121 -------------------------------------------------------------------------------- 120 (290)
T PF07899_consen 121 -------------------------------------------------------------------------------- 120 (290)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCC
Q 001522 728 LKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF 807 (1060)
Q Consensus 728 L~~i~p~isp~vke~AkklA~~WK~ki~~~~~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL 807 (1060)
++++.++++|+||||||++|||+++||.|||++||.+||+|+|||+||++|||
T Consensus 121 ---------------------------~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl 173 (290)
T PF07899_consen 121 ---------------------------GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGL 173 (290)
T ss_pred ---------------------------hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCc
Confidence 23355688999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhcCccchHHHHHHHhcccccCCCcHHHHHHHHHhhhhhh---hcCCCChHHHhHhhHHHHHHhHHHHH
Q 001522 808 TDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIH---RKGNNSSDAKVKAMDFEVNALTFLIE 884 (1060)
Q Consensus 808 ~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dkFpPVpLLKsYL~daKka~~---~kg~nS~~aq~eA~~KEl~ALraVIK 884 (1060)
+++|||||++||++||||+||+|||+|||+|+||||||||+||+++|+++. ++++++ .++++|+++|++||++|||
T Consensus 174 ~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~vik 252 (290)
T PF07899_consen 174 SDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSVIK 252 (290)
T ss_pred hhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998654 445445 9999999999999999999
Q ss_pred HhhhcCCccccchHHHHHHHHHHHHhhhhccccCCCC
Q 001522 885 CFKENKLESSLLIENIKQRIVQLEMAKADCRRHSTPA 921 (1060)
Q Consensus 885 CIEehKLEse~p~~~LkkRI~qLeK~kaekKR~~~~~ 921 (1060)
||++||||++||+++|++||.||+++++++||+.+++
T Consensus 253 cIee~kLes~~~~~~l~kri~~Lek~~~~~kr~~~~~ 289 (290)
T PF07899_consen 253 CIEEHKLESEFPLEPLQKRIEQLEKQKADRKRAAEAA 289 (290)
T ss_pred HHHHhccccccChHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999877654
No 2
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=99.72 E-value=6.2e-17 Score=177.56 Aligned_cols=171 Identities=27% Similarity=0.373 Sum_probs=114.5
Q ss_pred ChhhHHHhhhcCCCchhhHHHHHHhhhhcCCC-----CCccchhhhHHHHHHhhhhcCCCChhHHHHHHHHHHHHHhhcC
Q 001522 681 GHNEVLQLLHLAPDPAMFVLDFIQHWKSQGTG-----FEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMG 755 (1060)
Q Consensus 681 ~~~Ev~~AL~~ApDPAklVLdaV~~f~~~~~g-----~~~~~~~~CVLLLE~L~~i~p~isp~vke~AkklA~~WK~ki~ 755 (1060)
-++||++||++|||||+||||||++||+.+.+ ...+.+++||+|||+|+.++|.++|+|+++|+++|.+||+
T Consensus 41 lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~--- 117 (290)
T PF07899_consen 41 LREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISPEISPEVKEEAKKLAEEWKS--- 117 (290)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 47899999999999999999999999986653 2335779999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCch--hhhHHHHHHHhcCccchHHHHHHH
Q 001522 756 VGTLNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTD--IVANFVRNLIGRKKHIAAIRFICA 833 (1060)
Q Consensus 756 ~~~~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~d--kmpdiIq~LI~kGkqIeAVrFi~a 833 (1060)
.++ -++.-+.-+...|+..+| +-||.. .-.++...+..-.++=.|+.+...
T Consensus 118 -----~l~------------~~~~~~~lea~gFL~lla----------~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~s 170 (290)
T PF07899_consen 118 -----KLD------------GVNNENSLEALGFLQLLA----------AFGIVSEFDEDELLKLVVSVARRKQAPELCRS 170 (290)
T ss_pred -----HHH------------hcccCCCHHHHHHHHHHH----------HcCCccccCHHHHHHHHHHhcchHhhHHHHHH
Confidence 111 222333344444444443 233332 223333444444444457777777
Q ss_pred hcccccCCCcHHHHHHHHHhhhhhhhcCCCChHHHhHhhHHHHHHhHHHHHHhhhcCCccccchHHHHH-HHHHH
Q 001522 834 FKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALTFLIECFKENKLESSLLIENIKQ-RIVQL 907 (1060)
Q Consensus 834 FgL~dkFpPVpLLKsYL~daKka~~~kg~nS~~aq~eA~~KEl~ALraVIKCIEehKLEse~p~~~Lkk-RI~qL 907 (1060)
.||+++.| ++|+..-+ +| +.+. .|++|=.++|...||+-+|-+ -|...
T Consensus 171 Lgl~~k~~------d~V~~LI~----~g------------~~ie----Av~fi~~f~L~dkfpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 171 LGLSDKMP------DIVEKLIK----KG------------KQIE----AVRFIYAFGLVDKFPPVPLLKSYLEDS 219 (290)
T ss_pred cCchhhhH------HHHHHHHH----CC------------Cccc----hHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77777752 22222211 12 2222 345678899999999977544 44443
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.16 E-value=2.8e-05 Score=96.85 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241 (1060)
Q Consensus 162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k 241 (1060)
..++..+.++...+.....+|..+...++...+++...+..+..+...+....++++..+..+.....++...+.+++..
T Consensus 317 ~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444444554444555555555554444555555555555554444444444444
Q ss_pred HHHHH
Q 001522 242 KKELE 246 (1060)
Q Consensus 242 ~kEl~ 246 (1060)
...+.
T Consensus 397 ~~~l~ 401 (880)
T PRK02224 397 RERFG 401 (880)
T ss_pred HHHHh
Confidence 33333
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.06 E-value=0.00012 Score=91.43 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=36.1
Q ss_pred hhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhh
Q 001522 35 VLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGE 114 (1060)
Q Consensus 35 ~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~E 114 (1060)
+-.+.=+|..++.........+. .+......++.+...++.-+.++..+..++.++...+.....++......+.+
T Consensus 215 l~el~~~i~~~~~~~~~l~~~l~----~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~ 290 (880)
T PRK02224 215 LAELDEEIERYEEQREQARETRD----EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544433332 22233334444444444445555555555555555555444444444444444
Q ss_pred hh
Q 001522 115 CE 116 (1060)
Q Consensus 115 c~ 116 (1060)
+.
T Consensus 291 le 292 (880)
T PRK02224 291 LE 292 (880)
T ss_pred HH
Confidence 43
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.74 E-value=0.0042 Score=82.96 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=67.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHH
Q 001522 58 KQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWL 137 (1060)
Q Consensus 58 ~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~ 137 (1060)
....+++...+.+++|.-+.+.+..+++...++.+ .+++..++++......+.+-..|..+.+.++....+.|..+.
T Consensus 901 ~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~---~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~ 977 (1930)
T KOG0161|consen 901 AEKQELEKELKELKERLEEEEEKNAELERKKRKLE---QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD 977 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444444443333333 555555555555555556666777777777777777776655
Q ss_pred H---hhhhhhhhHHHHHhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001522 138 E---KLDLKMKEVGLVEKSNDKSL----VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECE 193 (1060)
Q Consensus 138 ~---~~~lK~kel~~~~~~~~~~~----~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~ 193 (1060)
+ ++.--.+++++.-.++..++ .+-..+......+.-++...+..++..++...+++
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 33333344555444444443 12222333444444444445555544444444444
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.73 E-value=0.00026 Score=89.70 Aligned_cols=7 Identities=43% Similarity=0.890 Sum_probs=2.7
Q ss_pred ccCCccc
Q 001522 1017 LSGGQMQ 1023 (1060)
Q Consensus 1017 ~~~~~~~ 1023 (1060)
+|||+++
T Consensus 1075 lSgge~~ 1081 (1164)
T TIGR02169 1075 MSGGEKS 1081 (1164)
T ss_pred cCcchHH
Confidence 3333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=0.00062 Score=86.32 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.4
Q ss_pred cccccccc
Q 001522 1027 IASNHLRV 1034 (1060)
Q Consensus 1027 ~~~~~~~~ 1034 (1060)
++..++||
T Consensus 1142 ~~d~~~~~ 1149 (1164)
T TIGR02169 1142 YADRAIGV 1149 (1164)
T ss_pred hcceeEeE
Confidence 33444443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=0.0042 Score=81.48 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001522 242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKR--- 318 (1060)
Q Consensus 242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r--- 318 (1060)
+.+|+...+.+.++..++.-.+.+++.....+..-..++............++...+..+.....+|....+.|..=
T Consensus 887 e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~ 966 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444444445555555555555555555544444444444444445555666666666666666666666541
Q ss_pred --HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhH
Q 001522 319 --SQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLI 357 (1060)
Q Consensus 319 --~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~i 357 (1060)
-..|+..+..+......++.+..+.+..-.++..+.+.+
T Consensus 967 ~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444445554444444444444444433443333333
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=0.0072 Score=79.41 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=47.9
Q ss_pred hHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHh-----------------hhhhHHHHHHHHHHHHHHhh
Q 001522 17 KKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQ-----------------SNDADSKIRLLDQRAKEIES 79 (1060)
Q Consensus 17 k~e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~-----------------~~~~~~~~~~le~r~ke~e~ 79 (1060)
+-..|++-++.+..+|.+..-+.+-=++|.+.-.+...-+... .+.+.++.+.+.+-...+.+
T Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~ 595 (1311)
T TIGR00606 516 KLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAK 595 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666665555555444444333332222111 22333444444444445555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhh
Q 001522 80 KESDLVLAERRIKECNFELACKEKQLELVRKRIG 113 (1060)
Q Consensus 80 ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~ 113 (1060)
.++++...+.+...+..++..+.+++.-..+.|.
T Consensus 596 ~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 596 LNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555666666666666665554444
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.64 E-value=0.0012 Score=83.27 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001522 422 ERWQDLEIKERKFEERVKEFE 442 (1060)
Q Consensus 422 ~r~kELe~KekefE~rvKE~E 442 (1060)
.+..+|...-..++..+.+++
T Consensus 1000 ~q~~dL~~~~~~L~~~i~~i~ 1020 (1179)
T TIGR02168 1000 ERYDFLTAQKEDLTEAKETLE 1020 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.63 E-value=0.0089 Score=80.02 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=34.4
Q ss_pred heecchhchHHHHHHhHHHH--HHhhhhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 001522 37 NFTVQWKDLEEHLDISMKSL--EKQSNDADSKIRLLDQRAKEIESKESDLVLA 87 (1060)
Q Consensus 37 ~~~lqw~~le~h~~s~~~~~--~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~ 87 (1060)
.=+.+|=.|-++++-.-..- +.+.....-....+.+.....|++..+++..
T Consensus 815 lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~ 867 (1930)
T KOG0161|consen 815 LRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEK 867 (1930)
T ss_pred hccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999998887665554 4455555566677777777777766666644
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.57 E-value=0.0074 Score=75.45 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhH
Q 001522 84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELN 127 (1060)
Q Consensus 84 ~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~ 127 (1060)
++....+++...+++..-..++..+...|.+...++...+.+++
T Consensus 233 l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~ 276 (880)
T PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333333344333333333
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.57 E-value=0.0019 Score=81.72 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.5
Q ss_pred hhHHHh
Q 001522 537 SLVLDA 542 (1060)
Q Consensus 537 klVLDa 542 (1060)
=++||-
T Consensus 1114 ~~~lDE 1119 (1179)
T TIGR02168 1114 FCILDE 1119 (1179)
T ss_pred eEEecC
Confidence 344443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.44 E-value=0.0066 Score=78.88 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 420 LDERWQDLEIKERKFEERVKEFELR 444 (1060)
Q Consensus 420 le~r~kELe~KekefE~rvKE~Elk 444 (1060)
+..+..+|....+.+.+.+.+++.+
T Consensus 982 l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 982 LKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666644
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.40 E-value=0.0046 Score=80.29 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhhhh
Q 001522 897 IENIKQRIVQLEMAKAD 913 (1060)
Q Consensus 897 ~~~LkkRI~qLeK~kae 913 (1060)
...|+..|..+.+.+.+
T Consensus 993 ~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 993 KEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666555543
No 16
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.032 Score=66.87 Aligned_cols=156 Identities=22% Similarity=0.220 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-Hhhhhh---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 001522 203 ASSLQSLIEDYAEELESKEKLYDEIKKSIIQC-ETKLDC---KKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278 (1060)
Q Consensus 203 ~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~-~k~l~~---k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~ 278 (1060)
.-.++.+|++..++++.+=-+|......|-.- -....+ -.....-..-.+..+++ -.....+.++..++..+.+
T Consensus 362 vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~--~~l~el~~ei~~~~~~~~~ 439 (581)
T KOG0995|consen 362 VWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVK--PLLKELLDEISEELHEAEN 439 (581)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhH--HHHHHHHHHHHHHHHHHHH
Confidence 44455567777778887777777777666555 111111 00000000000111110 0112223333333333333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHhHHHHHHhH
Q 001522 279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQE-SLEGCRNEFEEKENELISVEKLI 357 (1060)
Q Consensus 279 el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~k-e~~~~~~e~e~k~keL~s~~K~i 357 (1060)
++.. .++.+......-.|...+...|+.++++++++..+...-.. +-..|..|.|..+++|-...-.+
T Consensus 440 ~~~t-----------Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 440 ELET-----------LQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 12344455555566667777788888888887777654433 33666777777777665555555
Q ss_pred HHhHHHHHHhhhHH
Q 001522 358 DKCSEELELKKKHL 371 (1060)
Q Consensus 358 e~~~kELe~kekql 371 (1060)
...+++.+...+..
T Consensus 509 ~~~m~~a~~~v~s~ 522 (581)
T KOG0995|consen 509 NTSMKEAEELVKSI 522 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 17
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.037 Score=69.60 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhc--ccchhhHHHHHHHHHhhcCCCCCChHHHHH
Q 001522 592 VAGEWKKKMRVA--EDNSLEVLGFLHLLAAYGLGPSFDGIELES 633 (1060)
Q Consensus 592 LA~~WK~~~~~~--~en~levLGFL~lla~ygL~s~FD~dEll~ 633 (1060)
+..-||..+..= |.-||.+|...+-+--|.=+|.|=-||+-.
T Consensus 1072 ~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDA 1115 (1174)
T KOG0933|consen 1072 FGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDA 1115 (1174)
T ss_pred eCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHH
Confidence 344588887654 567888888877777777788887777763
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.93 E-value=0.15 Score=64.14 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=50.2
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001522 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKEL 196 (1060)
Q Consensus 117 ~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel 196 (1060)
.++.+...+...++.-|+-..+.+--|+.+-...+.+++-=..+..+-...+.+...++...+.+..-...+|++..-.+
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433311123333334444444444444444444444444444444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522 197 VMKEKHASSLQSLIEDYAEELESKEKLYDEIK 228 (1060)
Q Consensus 197 ~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ 228 (1060)
+.+++.+.-+...|+.+..-|.-|+++++..+
T Consensus 388 d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k 419 (775)
T PF10174_consen 388 DKKERKINVLQKKIENLEEQLREKDRQLDEEK 419 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454444444444444444444444444443
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.75 E-value=0.03 Score=60.78 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKC 331 (1060)
Q Consensus 295 ~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~ 331 (1060)
+.++..++.+..+|+..-+.+...++.|+..+.+...
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~ 169 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE 169 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 4455555555555555555555555555555555444
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.69 E-value=0.062 Score=58.34 Aligned_cols=82 Identities=22% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHHH
Q 001522 318 RSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQT 397 (1060)
Q Consensus 318 r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~~ 397 (1060)
+..+...+-..++.-....+.+...++.+.++|+.-=+.+...++.|+....+....+..+..-+..|..+-++.+.+..
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae 193 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE 193 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444555555555555556666666666666666644444444444444444444444333
Q ss_pred HH
Q 001522 398 MA 399 (1060)
Q Consensus 398 ~~ 399 (1060)
..
T Consensus 194 ~a 195 (237)
T PF00261_consen 194 FA 195 (237)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.51 Score=60.84 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522 209 LIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLD 288 (1060)
Q Consensus 209 ~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~ 288 (1060)
+|++++.++..+...+.....+++....+++.. |.. +...+.-.+++++.-.+++...++-.+.-..++.
T Consensus 374 ~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~---lK~-------~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~ 443 (1293)
T KOG0996|consen 374 EIKERAKELKNKFESLKKKFQDLEREDVKREEK---LKR-------LTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQ 443 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHH
Confidence 344455555444444444444444444444222 222 2222333333344444444333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 289 AMKEEMKKYFNDIELKEREFNGIRKCIE 316 (1060)
Q Consensus 289 ~~e~~~~~~~ke~e~KekEl~~~~k~ie 316 (1060)
.++.++..+-...+.-+++|..++..+.
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444443
No 22
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.51 E-value=0.57 Score=58.92 Aligned_cols=235 Identities=23% Similarity=0.270 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241 (1060)
Q Consensus 162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k 241 (1060)
.+|++++.+|++.|+...-. +++=-.+-+||+.--.|++..+.=--.++...-...+++...+++.+.--.=-+..
T Consensus 227 ~eLr~QvrdLtEkLetlR~k----R~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~ 302 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLK----RAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERY 302 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777665543211 11111222333333333333332222233333445555555555544443333455
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 001522 242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKY-----------FNDIELKEREFNG 310 (1060)
Q Consensus 242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~-----------~ke~e~KekEl~~ 310 (1060)
+.|+.-+.+.|+=..-.-|.-|..-++.+.+++.--.++++.+..++-.+.+|++. +|.++.. +.
T Consensus 303 k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqq----N~ 378 (1243)
T KOG0971|consen 303 KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQ----NA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHH----HH
Confidence 67777788888777777788888899999999888888888888888777777543 4444432 22
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHH------HHHH
Q 001522 311 IRKCIEKRSQELTLKEKQ-LKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAA------ELSD 383 (1060)
Q Consensus 311 ~~k~ie~r~kELe~KEkq-l~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~k------el~~ 383 (1060)
+.|.-=.|+-+|-.-+|+ +.-.+++++-+..|+. +|......+-.++...|+.--.| ..+|. +.|.
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~----eL~r~kE~Lsr~~d~aEs~iadl---kEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELE----ELRRQKERLSRELDQAESTIADL---KEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcHHHHHH
Confidence 233333456666666665 4444555555555543 45566666666666666655555 33332 3366
Q ss_pred HhhhhhhhhhHHHHHHHHhHHHHHHHHH
Q 001522 384 ECESNELELDLIQTMAIGYLKQLKEKEK 411 (1060)
Q Consensus 384 e~EsKeKele~~~~~~~~~~ke~e~kek 411 (1060)
.+-+|.-++|.+.+.+++-.-+++..+.
T Consensus 452 qLtdknlnlEekVklLeetv~dlEalee 479 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLEALEE 479 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777776666555443
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.47 E-value=1 Score=60.84 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=121.6
Q ss_pred HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh---------------------------
Q 001522 186 RSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL--------------------------- 238 (1060)
Q Consensus 186 ~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l--------------------------- 238 (1060)
.+-|-..+++.+--++++..+..+...+.....+-.+.+++.+..+-.++...
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN 1231 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESN 1231 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhH
Confidence 33344444444444555555555555555566666666666665555555222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHHHH-----HHHHHH
Q 001522 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM---KKYFNDIELK-----EREFNG 310 (1060)
Q Consensus 239 ~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~---~~~~ke~e~K-----ekEl~~ 310 (1060)
...+++++.....+.++..+++..+..+.-.+..+..-..++.-+..+++.++.++ +.++.++..+ -.+++.
T Consensus 1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~k 1311 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEK 1311 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 12244444555555566666666655555555555555555555555555555544 2334444444 233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhh
Q 001522 311 IRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNEL 390 (1060)
Q Consensus 311 ~~k~ie~r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeK 390 (1060)
....|+.-..+|+.+++++.++.+.+....+.+..+++.|.--......++++++.+...|.-.+....+.+.++..+.+
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~ 1391 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKK 1391 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666678888888888888888888888888888888888888888888888888885444444444444444443
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.44 E-value=1.1 Score=60.55 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=45.4
Q ss_pred cchhhhhhhhHhhHHHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHH
Q 001522 5 DNNKEELRLAESKKEILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADS 65 (1060)
Q Consensus 5 ~~~~~~l~l~~~k~e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~ 65 (1060)
+++.+.+.+++-|=++|++.++...+.+-++. =+-++|.+++-.-...+...+.++..
T Consensus 678 ~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~---er~~~l~~~i~~~~q~~~~~s~eL~~ 735 (1822)
T KOG4674|consen 678 EKLKNELNLAKEKLENLEKNLELTKEEVETLE---ERNKNLQSTISKQEQTVHTLSQELLS 735 (1822)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999999999999888887665 45677888777777777777777763
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.75 Score=58.61 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHh
Q 001522 49 LDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRK 110 (1060)
Q Consensus 49 ~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~ 110 (1060)
++-....++.....+..-.+.|.++++.+..-+..++.++....+..+-++..++.++-+..
T Consensus 324 l~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~ 385 (1174)
T KOG0933|consen 324 LNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTA 385 (1174)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444444445556666667777666667777777777777777777777765554
No 26
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.63 Score=56.33 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 404 KQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVK 439 (1060)
Q Consensus 404 ke~e~kekefeskEk~le~r~kELe~KekefE~rvK 439 (1060)
.+.+.+++++..++-.+.-.+++.+...+..+....
T Consensus 492 ~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~ 527 (581)
T KOG0995|consen 492 KEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELD 527 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665555555555555555554444333
No 27
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.36 E-value=0.79 Score=57.08 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 001522 160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD 239 (1060)
Q Consensus 160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~ 239 (1060)
+.++++++|-.|....-.+|-+.-+++--|..-.-.+..-+++++....+.+++..+|-.|--++--.-.++.-....|.
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence 44556667777766666777777777777777777777777777777777777777777776666655555555555554
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HhhhhhHHHHHHHHHHHH---HHHHHHHHHHHH
Q 001522 240 CKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR----------ENELDSKEEKLDAMKEEM---KKYFNDIELKER 306 (1060)
Q Consensus 240 ~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r----------~~el~~~~~e~~~~e~~~---~~~~ke~e~Kek 306 (1060)
....+++-+-....+..+.++-+=+++.+-..+...+ ..++.+..+++-.-...| +.++--++.+++
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~ 259 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDM 259 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHH
Confidence 4455554444444444444444433333322222111 111122233333222222 344555555666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001522 307 EFNGIRKCIEKRSQELTLK 325 (1060)
Q Consensus 307 El~~~~k~ie~r~kELe~K 325 (1060)
.++..-|.|++.+.+|+.+
T Consensus 260 ~lq~sak~ieE~m~qlk~k 278 (1265)
T KOG0976|consen 260 DLQASAKEIEEKMRQLKAK 278 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655555555544444443
No 28
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.30 E-value=1.1 Score=57.46 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHH
Q 001522 63 ADSKIRLLDQRAKEIESKESDLVL 86 (1060)
Q Consensus 63 ~~~~~~~le~r~ke~e~ke~~~~~ 86 (1060)
+......++++.++++.-....+.
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.21 E-value=1.4 Score=56.81 Aligned_cols=131 Identities=19% Similarity=0.297 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHH-------hhhhhhhhHHHHHhhhhhhh-H
Q 001522 88 ERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE-------KLDLKMKEVGLVEKSNDKSL-V 159 (1060)
Q Consensus 88 ~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~-------~~~lK~kel~~~~~~~~~~~-~ 159 (1060)
++++.+..-|....+.++..+| ..++..+.+.+.++-++.+.+- ..+..++.++-..+...+++ +
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r-------~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~ 394 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEAR-------KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGS 394 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333444444444444444444 6666666666666655555544 33444444444444444455 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH
Q 001522 160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD 225 (1060)
Q Consensus 160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e 225 (1060)
.+.+.++.++.|..+.+..+.+..+.+.+++.+..++...+..+..++.+|..+.+.++..-.++.
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~ 460 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELK 460 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888888888888888888888777777777776555444444443333
No 30
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.62 Score=57.85 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=15.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHH
Q 001522 150 VEKSNDKSLVDQRRLENLIKDFC 172 (1060)
Q Consensus 150 ~~~~~~~~~~~~~~~e~~~~~~~ 172 (1060)
.+..++++|.+|++||+++.+-.
T Consensus 369 ~qlElekqLerQReiE~qrEEer 391 (1118)
T KOG1029|consen 369 AQLELEKQLERQREIERQREEER 391 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677778888887776544
No 31
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.15 E-value=1.8 Score=56.95 Aligned_cols=119 Identities=21% Similarity=0.148 Sum_probs=65.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH--------------hhhhhhh---------hhhhhhhhhhHhhHHH
Q 001522 76 EIESKESDLVLAERRIKECNFELACKEKQLELVR--------------KRIGECE---------CELQLKEGELNLVKKS 132 (1060)
Q Consensus 76 e~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r--------------~~i~Ec~---------~El~~ke~~L~~~~~~ 132 (1060)
++.+++.-+..--+-+.+...+|+.-+.++..-| +-|+.|. +.+.+++. -.++.
T Consensus 618 ~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee-~ef~~-- 694 (1294)
T KOG0962|consen 618 ELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEE-VEFIK-- 694 (1294)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHH-HHHHH--
Confidence 3344444444444444555555555555555544 4666654 44555544 34443
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhhhh------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001522 133 VEEWLEKLDLKMKEVGLVEKSNDKSL------VDQRRLEN-LIKDFCEQIELKEKDLRKIRSSIEECEKELVMK 199 (1060)
Q Consensus 133 i~e~~~~~~lK~kel~~~~~~~~~~~------~~~~~~e~-~~~~~~~ele~keke~~~~~k~Ie~~~kel~~K 199 (1060)
+...++++.--++.+..+.+.+.. ...+.+.. .++.+++.+...+++++.+...|+...-+++.-
T Consensus 695 --~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~ 766 (1294)
T KOG0962|consen 695 --KLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDD 766 (1294)
T ss_pred --HHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHH
Confidence 333467777666666555554332 22333333 556666777777777777777777666555443
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.14 E-value=1.4 Score=55.67 Aligned_cols=232 Identities=20% Similarity=0.256 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-HHHH
Q 001522 84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-VDQR 162 (1060)
Q Consensus 84 ~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-~~~~ 162 (1060)
++.....+.....|.+---.++..+|+.+++-...+.+-...|.....+|+...+.++.|+-.-.....+ ... .-..
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~--~~~~~~~~ 186 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED--NEALRRIR 186 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh--hHHHHHHH
Confidence 4455666666677777777777777777777778888888888888888888888776665543211110 111 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH----
Q 001522 163 RLENLIKDFCEQIELKEKDLRKIRSSI-------------EECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD---- 225 (1060)
Q Consensus 163 ~~e~~~~~~~~ele~keke~~~~~k~I-------------e~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e---- 225 (1060)
+.+..+..+.--++.+++++...+..+ +...+-++.|++...++++.++..-.|+......++
T Consensus 187 ~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~ 266 (775)
T PF10174_consen 187 EAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA 266 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 455555555555666666663221111 122334445555566665555554444444432222
Q ss_pred ---HHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001522 226 ---EIKKSIIQ-------CETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMK 295 (1060)
Q Consensus 226 ---~~~ke~e~-------~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~ 295 (1060)
...+.++. -..+++.-.-+|.-+...+..+.++++....+....+..|+.-..++-.+.-+-..+...++
T Consensus 267 ~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve 346 (775)
T PF10174_consen 267 DRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVE 346 (775)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11112221 11234444555555556667777777777777777777777666666665555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001522 296 KYFNDIELKEREFNGIRKCIEK 317 (1060)
Q Consensus 296 ~~~ke~e~KekEl~~~~k~ie~ 317 (1060)
.+.-.++.+...++-..+.++.
T Consensus 347 ~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 347 ALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555555533
No 33
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.05 E-value=2.1 Score=55.84 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhhh
Q 001522 158 LVDQRRLENLIKDFCEQIELKEK---DLRKIRSSIEECEKELVMKEKHAS 204 (1060)
Q Consensus 158 ~~~~~~~e~~~~~~~~ele~kek---e~~~~~k~Ie~~~kel~~Ke~~~~ 204 (1060)
+.+...++-..+++++++..... ++..+...++..+..|-...+.++
T Consensus 559 ~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~ 608 (1317)
T KOG0612|consen 559 SEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLR 608 (1317)
T ss_pred HHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777666655 555555555555555444444333
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.01 E-value=1 Score=53.88 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 001522 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCET 236 (1060)
Q Consensus 163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k 236 (1060)
.++..++.+..++...+.+++..+..|+...+.+. .....++.+++.+..+....+.+++.++.++.....
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555555555544432 223334444444444444444444444444444433
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.00 E-value=0.6 Score=54.74 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001522 295 KKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEG 338 (1060)
Q Consensus 295 ~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~ 338 (1060)
..++.++.....++......++....+|+..-.+++.....+..
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444455544444444444444444444443333333
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.90 E-value=2.5 Score=54.59 Aligned_cols=188 Identities=16% Similarity=0.238 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 001522 81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160 (1060)
Q Consensus 81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~ 160 (1060)
|+..-..++..+.|..++.-++.......+.|++-.-...+-+..+..+...|++...+-+-.--|++...++++.-.+.
T Consensus 273 W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 273 WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333333333333333333333444444444444444444555566666655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 001522 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKEL-VMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLD 239 (1060)
Q Consensus 161 ~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel-~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~ 239 (1060)
-..++..+.+++..+..+.+..+...+.|....+++ ..-...+..++..++-+..|+|--+-++..++.+...+..++.
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999888887 4456666666666666666666666677777777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001522 240 CKKKELELTQTSIIELSLELHLEEEKLES 268 (1060)
Q Consensus 240 ~k~kEl~~~e~~i~e~~~ele~kEk~~e~ 268 (1060)
...+++..+++.|....+.++..-..+..
T Consensus 433 ~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 433 EEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666544443
No 37
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.87 E-value=2.6 Score=54.15 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001522 314 CIEKRSQELTLKEKQL 329 (1060)
Q Consensus 314 ~ie~r~kELe~KEkql 329 (1060)
.++.+.+++......+
T Consensus 563 ~le~~~~~l~~~~~~~ 578 (908)
T COG0419 563 QLEDRLQELKELLEEL 578 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.76 E-value=1.5 Score=52.58 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=5.7
Q ss_pred CCchhhHHHh
Q 001522 533 CDPASLVLDA 542 (1060)
Q Consensus 533 sDPAklVLDa 542 (1060)
.+|.-++||-
T Consensus 495 ~~~~~lilDE 504 (562)
T PHA02562 495 VDTNLLILDE 504 (562)
T ss_pred CCcCeEEEec
Confidence 4566666653
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.66 E-value=2.6 Score=51.35 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001522 427 LEIKERKFEERVKEFE 442 (1060)
Q Consensus 427 Le~KekefE~rvKE~E 442 (1060)
|.....++...+.-++
T Consensus 436 l~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 436 LQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 40
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=4.2 Score=52.12 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=31.9
Q ss_pred HHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHH
Q 001522 342 EFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQ 396 (1060)
Q Consensus 342 e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~ 396 (1060)
+...++.++.+.--++.....|+..+++.+ |..-+.+...++..+-.++..+
T Consensus 443 e~~~r~~~~~~~~~~~k~~~del~~~Rk~l---WREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 443 ETKGRMEEFDAENTELKRELDELQDKRKEL---WREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666677777888888888 6554555444444444444333
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=5.1 Score=52.30 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
.++..+.++.++|.-..+++-..+.++++..-+|.--........+.++++-.-|......+++.+-.|......|
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666666667777777767777776666666653333333333333343344443333333333333333333
No 42
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.45 E-value=5.3 Score=52.35 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHhhhhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 001522 48 HLDISMKSLEKQSNDAD-SKIRLLDQRAKEIESKESDLVLAERRIKECNFELA 99 (1060)
Q Consensus 48 h~~s~~~~~~~~~~~~~-~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~ 99 (1060)
-++++...+..+..++. +...++-...++++.+..+.+....+.+..+++++
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~ 521 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLE 521 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777766666666 45556666677777777766666555555544443
No 43
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.38 E-value=4.2 Score=50.47 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522 196 LVMKEKHASSLQSLIEDYAEELESKEKLYDEIK 228 (1060)
Q Consensus 196 l~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ 228 (1060)
|.+.+..+...++.+.-++.||.-|-..++++.
T Consensus 365 L~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt 397 (786)
T PF05483_consen 365 LTTEQQRLKKNEDQLKILTMELQKKSSELEEMT 397 (786)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444445555555555566666666666554
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.34 E-value=4.3 Score=50.19 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 166 NLIKDFCEQIELKEKDL----RKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 166 ~~~~~~~~ele~keke~----~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
..+.+|..+|+.....| +..+........+...+-.++..+...+.+...|+..|+..+..+..+++...+..
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44556666776654433 33333334444444456777788888889999999999999999888888877664
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.25 E-value=7.2 Score=51.87 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=35.3
Q ss_pred chhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHhHHhHHHHHh
Q 001522 41 QWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAE---RRIKECNFELACKEKQLELVRK 110 (1060)
Q Consensus 41 qw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~---~~~ee~~~el~~Kek~l~~~r~ 110 (1060)
+|+++-+.++.-.+.+......+.+++..++++-..++..- ++.+. .+..+...+++.++.++..+-.
T Consensus 303 ~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~--i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~ 373 (1201)
T PF12128_consen 303 EIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDAD--IEQLIARVDQLPEWRNELENLQEQLDLLTS 373 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655555555566666666555554321 22222 2223555555655555555443
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.01 E-value=10 Score=51.52 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.0
Q ss_pred CChHHHhHhhHHHHHHhHHHHHHhhh-cCCccccchHHHHHHHHHH
Q 001522 863 NSSDAKVKAMDFEVNALTFLIECFKE-NKLESSLLIENIKQRIVQL 907 (1060)
Q Consensus 863 nS~~aq~eA~~KEl~ALraVIKCIEe-hKLEse~p~~~LkkRI~qL 907 (1060)
.++....+.++.++..++..|+--+. +. .+.+.+-..|...
T Consensus 1207 ~~p~et~e~Le~ei~rl~~~L~e~Er~L~----~s~eEVa~~l~~r 1248 (1486)
T PRK04863 1207 DDPVEAIEQMEIELSRLTEELTSREQKLA----ISSESVANIIRKT 1248 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence 45666778899999999999988877 33 4454444444433
No 47
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=9.4 Score=49.60 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.1
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 001522 604 EDNSLEVLGFLHLLAAYGLGPSFDGIELESLLDI 637 (1060)
Q Consensus 604 ~en~levLGFL~lla~ygL~s~FD~dEll~L~~~ 637 (1060)
|+-.+.||+.|.-+-.|.=+|-|=-||+-.-++.
T Consensus 1055 GEKTvAaLALLFaihsy~PaPFfvlDEiDAALDn 1088 (1141)
T KOG0018|consen 1055 GEKTVAALALLFAIHSYKPAPFFVLDEIDAALDN 1088 (1141)
T ss_pred cHHHHHHHHHHHHhccCCCCCceehhhHHHHhhh
Confidence 5666888888888888899999988888866654
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.81 E-value=11 Score=50.19 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q 001522 19 EILRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQR 73 (1060)
Q Consensus 19 e~~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r 73 (1060)
+.+|..++.+..+-+++..+..|=+.|-.++..+...++.....+..+...+...
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEE 296 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6677788888888888888888888777777777777766666665555444444
No 49
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.79 E-value=7.8 Score=48.30 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001522 164 LENLIKDFCEQIELKEKDLRKIRS 187 (1060)
Q Consensus 164 ~e~~~~~~~~ele~keke~~~~~k 187 (1060)
++.+++-++.+|..+..+++++-+
T Consensus 375 ~ed~lk~l~~eLqkks~eleEmtk 398 (786)
T PF05483_consen 375 NEDQLKILTMELQKKSSELEEMTK 398 (786)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555555566666655555443
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=11 Score=47.67 Aligned_cols=88 Identities=26% Similarity=0.285 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHh----hH
Q 001522 306 REFNGIRKCIEKRSQELTLKEKQLKCVQESLEGC---RNEFEEKENELISVEKLIDKCSEELELKKKHLCVIEN----SA 378 (1060)
Q Consensus 306 kEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~~---~~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~----~~ 378 (1060)
-+++++.+.++.++.|...+.-++.+.+..+.-. ..++..+.|...+.-+.-..+..+|+....+-+.|-. .+
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql 551 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL 551 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766666666655554332 3455566665555555555666677766666554443 33
Q ss_pred HHHHHHhhhhhhhhh
Q 001522 379 AELSDECESNELELD 393 (1060)
Q Consensus 379 kel~~e~EsKeKele 393 (1060)
.++.++-+||..+.+
T Consensus 552 delskE~esk~~eid 566 (1118)
T KOG1029|consen 552 DELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHhhh
Confidence 444455555544444
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.20 E-value=11 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHH
Q 001522 337 EGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1060)
Q Consensus 337 ~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekql 371 (1060)
+....+++.-..++..+.+++...-+|-+..++++
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455455555544444444444444
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.08 E-value=14 Score=46.82 Aligned_cols=43 Identities=30% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001522 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217 (1060)
Q Consensus 175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~EL 217 (1060)
|+.....|....+.|++.+++|+.|...|.-.-+..+++|+++
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~ 296 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKEL 296 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555666777778888888888888777777667777776654
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.84 E-value=3.2 Score=46.03 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001522 169 KDFCEQIELKEKDLRKIRSSIEECEKELVM--KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1060)
Q Consensus 169 ~~~~~ele~keke~~~~~k~Ie~~~kel~~--Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~ 246 (1060)
.++..+....+.++.+++.-|..-...+.. .++.++.+..+|.-.-..+.+.+.++.....+++...+++......+.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444422 245555555555444444455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 247 LTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 247 ~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
..++.+.+....++..-..+......+
T Consensus 135 ~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 135 RLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444433333333333
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.79 E-value=14 Score=45.38 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=10.8
Q ss_pred hhhhhhhhhhHhhHHHHHHH
Q 001522 117 CELQLKEGELNLVKKSVEEW 136 (1060)
Q Consensus 117 ~El~~ke~~L~~~~~~i~e~ 136 (1060)
+.+-+.+-.++..-+.|+..
T Consensus 154 k~ll~~~~~~G~a~~~le~~ 173 (569)
T PRK04778 154 KSLLANRFSFGPALDELEKQ 173 (569)
T ss_pred HHHHhcCccccchHHHHHHH
Confidence 55555555555555555433
No 55
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.78 E-value=19 Score=46.74 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 412 QFHSLKEALDERWQDLEIKERKFEERVKEFELR 444 (1060)
Q Consensus 412 efeskEk~le~r~kELe~KekefE~rvKE~Elk 444 (1060)
.|.+-...+..|..||.-=.+.+.+-+..++++
T Consensus 981 nfseQre~L~~R~eELd~s~~sI~eLi~vLdqr 1013 (1200)
T KOG0964|consen 981 NFSEQRESLKKRQEELDRSKDSILELITVLDQR 1013 (1200)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHh
Confidence 355556677888888888888888888888764
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.76 E-value=6.5 Score=43.65 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001522 302 ELKEREFNGIRKCIEKRSQ 320 (1060)
Q Consensus 302 e~KekEl~~~~k~ie~r~k 320 (1060)
...++.|.+.+..++..+.
T Consensus 134 ~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 134 ERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.72 E-value=9 Score=42.80 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=51.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHH
Q 001522 53 MKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKS 132 (1060)
Q Consensus 53 ~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~ 132 (1060)
+..+-+++-..-.|-|.||..++.++..-..+.... -.++..--..=+.++..+|..|+.+..|-..-+.+++-....
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 345556666666777888888877665544444332 223333344456778888888888888877777777777777
Q ss_pred HHHHHH
Q 001522 133 VEEWLE 138 (1060)
Q Consensus 133 i~e~~~ 138 (1060)
+.+...
T Consensus 84 ~~~~r~ 89 (312)
T PF00038_consen 84 LEDLRR 89 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775544
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.52 E-value=14 Score=44.11 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 001522 180 KDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKE 244 (1060)
Q Consensus 180 ke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kE 244 (1060)
++++.+++.|+...+++..-.+.+..++++|..+-.++..-+.++-+-...+...+++|......
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 44555555555555555555555555555555555555555555554444444444444433333
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.51 E-value=28 Score=47.61 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHhhhhccc
Q 001522 897 IENIKQRIVQLEMAKADCRR 916 (1060)
Q Consensus 897 ~~~LkkRI~qLeK~kaekKR 916 (1060)
++.|...|..+.....++-+
T Consensus 1213 ~e~Le~ei~rl~~~L~e~Er 1232 (1486)
T PRK04863 1213 IEQMEIELSRLTEELTSREQ 1232 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776654
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.40 E-value=19 Score=45.13 Aligned_cols=183 Identities=22% Similarity=0.204 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001522 165 ENLIKDFCEQIELKEKDL-------RKIRSSIEECEKELVMKEK--HASSLQSLIEDYAEELESKEKLYDEIKKSIIQCE 235 (1060)
Q Consensus 165 e~~~~~~~~ele~keke~-------~~~~k~Ie~~~kel~~Ke~--~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~ 235 (1060)
..+.++++-.+-..||.+ |+.++++-...++|..+-- .|..-...|.+++.|=|-.-|+.-.. .-.=
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q----s~iI 476 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ----SAII 476 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHH
Confidence 344455555544444444 3444444444444444321 22223334555555544444433322 1222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCI 315 (1060)
Q Consensus 236 k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~i 315 (1060)
|+|-.+.|+-+-.....++++++|++.+..+..+.+.-+.-++.+-.-..+...+..+.+...-.....-.+|+++-..+
T Consensus 477 kKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 477 KKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55666667767677777888888988888888877666555555544333444444455555555555555666655555
Q ss_pred HHHHHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHhHHHH
Q 001522 316 EKRSQELTL---KEKQLKCVQESLEGCRNEFEEKENELISV 353 (1060)
Q Consensus 316 e~r~kELe~---KEkql~~~~ke~~~~~~e~e~k~keL~s~ 353 (1060)
+--..++.+ |+..++ +.+.+.....+.-++.+|...
T Consensus 557 qat~d~a~~Dlqk~nrlk--Qdear~~~~~lvqqv~dLR~~ 595 (961)
T KOG4673|consen 557 QATNDEARSDLQKENRLK--QDEARERESMLVQQVEDLRQT 595 (961)
T ss_pred HHhhhhhhhhHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Confidence 554444444 333333 556666666777776666543
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.37 E-value=19 Score=45.08 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001522 211 EDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELT 248 (1060)
Q Consensus 211 e~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~ 248 (1060)
++++.-+-..||.|....++-+-.+++++..++||...
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 56667777777888888888888888887778887743
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.02 E-value=18 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001522 206 LQSLIEDYAEELESKEKLYDEIKKSI 231 (1060)
Q Consensus 206 ~e~~ie~~~~ELE~Kek~~e~~~ke~ 231 (1060)
+|.||..+--||..||.++..+..++
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.82 E-value=28 Score=44.95 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHhhhhcccc
Q 001522 896 LIENIKQRIVQLEMAKADCRRH 917 (1060)
Q Consensus 896 p~~~LkkRI~qLeK~kaekKR~ 917 (1060)
..|-|+..|.+||..+++.|-+
T Consensus 1027 tmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 1027 TMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 3689999999999999988744
No 64
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.26 E-value=24 Score=42.57 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 207 QSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 207 e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
..++.+..++||-+=.+|+.....|-..+.++
T Consensus 402 ~leaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 402 KLEAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 34466777777777778887776666554443
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.05 E-value=28 Score=42.60 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 249 QTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 249 e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
......|..+++..++.++....++
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666655555
No 66
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.84 E-value=29 Score=42.37 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHH
Q 001522 320 QELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHL 371 (1060)
Q Consensus 320 kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekql 371 (1060)
..|.....+...+...+++...+++.-..++...+.....-...+.+.+.++
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL 346 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL 346 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 3444444445555555555555555555555555544443333333333333
No 67
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.67 E-value=49 Score=44.48 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 001522 62 DADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 62 ~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
.+.+.-..+..=+..++..++.|+.+..-..-.-.++.+.++.+.+.+
T Consensus 699 ~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~ 746 (1294)
T KOG0962|consen 699 KIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELE 746 (1294)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHH
Confidence 333333444444555555666666555555544445555555555555
No 68
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.63 E-value=17 Score=39.14 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 283 KEEKLDAMKEEMKKYFNDIELKERE 307 (1060)
Q Consensus 283 ~~~e~~~~e~~~~~~~ke~e~KekE 307 (1060)
...+++.+..++..+-.-+..|+++
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444444444444443
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.52 E-value=35 Score=42.52 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHhhhchhheecchhchHHHHHHhHHH
Q 001522 28 AHAQANSVLNFTVQWKDLEEHLDISMKS 55 (1060)
Q Consensus 28 ~~~qas~~l~~~lqw~~le~h~~s~~~~ 55 (1060)
+.+-.+++|.+.+ -..|..|++.....
T Consensus 171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~ 197 (650)
T TIGR03185 171 LKEAIEVLLGLDL-IDRLAGDLTNVLRR 197 (650)
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHHHHHH
Confidence 5555677778877 77778887775544
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.16 E-value=58 Score=42.16 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001522 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIE 254 (1060)
Q Consensus 175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e 254 (1060)
+..-..+.+.-+..|++.+++--..+.....+..-+.+++.+=-..-.+++.+++.+++-++-+....++.....+++++
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666655555555555555555544433334456666666666666665555555555566666
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522 255 LSLELHLEEEKLESLQRIVRLRENELDSKEEKLD 288 (1060)
Q Consensus 255 ~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~ 288 (1060)
..++...-+.+.++..+-++.-+.++..+..+++
T Consensus 478 ~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 478 LQRAAGRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555555555544444444333333
No 71
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.13 E-value=62 Score=42.45 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001522 203 ASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1060)
Q Consensus 203 ~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~ 246 (1060)
+..+++++++..+.+|++.+.-+.+++.|+.-++.|.....+|.
T Consensus 313 ~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 313 LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445555555555555555555555555555555544444443
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.78 E-value=21 Score=36.66 Aligned_cols=64 Identities=28% Similarity=0.355 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522 165 ENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHA---SSLQSLIEDYAEELESKEKLYDEIK 228 (1060)
Q Consensus 165 e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~---~~~e~~ie~~~~ELE~Kek~~e~~~ 228 (1060)
+..|..|...+...+.+++.+...+......+...+++. +.+.+.|.-+-++|+.-++.+....
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666655555555555544332 2333334444444444444444333
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.77 E-value=50 Score=40.76 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 371 LCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEFEL 443 (1060)
Q Consensus 371 le~ie~~~kel~~e~EsKeKele~~~~~~~~~~ke~e~kekefeskEk~le~r~kELe~KekefE~rvKE~El 443 (1060)
+..+...+..+...++....-+-..+..+.....++. .++.....+...+..|...|+....++..+..
T Consensus 353 l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~----~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 353 LKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE----EIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445444444444444433333333 33344556677777777778777777777764
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.76 E-value=58 Score=41.48 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=44.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001522 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRI 272 (1060)
Q Consensus 213 ~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ 272 (1060)
.-.+|..+.++.|+++..+-...+....-+.-+...|+.+.+-.+.....|+||...++.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777776667777778888887777777778887776654
No 75
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.71 E-value=26 Score=44.54 Aligned_cols=181 Identities=21% Similarity=0.279 Sum_probs=113.6
Q ss_pred HHHhHHHHHHhhhchhheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001522 21 LRRSYDLAHAQANSVLNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELAC 100 (1060)
Q Consensus 21 ~~~~~~~~~~qas~~l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~ 100 (1060)
+.|-+.++++= -|.|-.+.-=.|++.|...++--++-.---|+++.|.|+++.+|-|..++.-+-
T Consensus 358 ~qRLitEvE~c-islLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~-------------- 422 (861)
T PF15254_consen 358 VQRLITEVEAC-ISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGS-------------- 422 (861)
T ss_pred HHHHHHHHHHH-HHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCC--------------
Confidence 45566677654 457777788889999999999999888888999999999999986665544321
Q ss_pred hHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001522 101 KEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEK 180 (1060)
Q Consensus 101 Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~kek 180 (1060)
.+|..||-+-.. ||++ |..++++..+.++....
T Consensus 423 ------------~~~n~El~sLqS-lN~~----------------------------------Lq~ql~es~k~~e~lq~ 455 (861)
T PF15254_consen 423 ------------QDCNLELFSLQS-LNMS----------------------------------LQNQLQESLKSQELLQS 455 (861)
T ss_pred ------------cccchhhHHHHH-HHHH----------------------------------HHHHHHHHHHhHHHHHH
Confidence 245555544332 3333 23455555555666555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 001522 181 DLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELH 260 (1060)
Q Consensus 181 e~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele 260 (1060)
.-+++.|.|+....| -..+.+.+.-|+.++.+-++.++-.-.++ +-|++...-.+..+.-.|+
T Consensus 456 kneellk~~e~q~~E--------------nk~~~~~~~ekd~~l~~~kq~~d~e~~ri---k~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 456 KNEELLKVIENQKEE--------------NKRLRKMFQEKDQELLENKQQFDIETTRI---KIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred hHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHH
Confidence 555555555544433 11245566666776766666666655555 5666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 001522 261 LEEEKLESLQRIVRLRENEL 280 (1060)
Q Consensus 261 ~kEk~~e~~~k~ie~r~~el 280 (1060)
.-|++-....-.+..|..++
T Consensus 519 ~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 519 ASEKENQILGITLRQRDAEI 538 (861)
T ss_pred HHHhhhhHhhhHHHHHHHHH
Confidence 66665555544554454444
No 76
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.29 E-value=55 Score=40.49 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=88.1
Q ss_pred HHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-------HHHHHHHHHHHHHHHH
Q 001522 102 EKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-------VDQRRLENLIKDFCEQ 174 (1060)
Q Consensus 102 ek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-------~~~~~~e~~~~~~~~e 174 (1060)
+.++.-.|+.|+|-.++.-.-+.++.....++.+....++-+++++...+.++...+ .+..-+.+.++.|..+
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888887788888888877777665333 2334456777777777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 001522 175 IELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIK 228 (1060)
Q Consensus 175 le~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ 228 (1060)
+..+.++..-++..|..-.++|+..---+...+-.+..+.++|.-....++...
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI 224 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEI 224 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 777777777777777777776655433333344445566666666666555443
No 77
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.28 E-value=53 Score=40.28 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=23.4
Q ss_pred chhhHHHHHHHhhhhhhhhhhhHHHhhhhcC-Cc-----hhhHHHhh
Q 001522 503 TGKNLQLLLNQHLQKHDLVFGEISHTLTKAC-DP-----ASLVLDAM 543 (1060)
Q Consensus 503 DgkgL~~~i~e~~k~~~~ir~Ei~~AL~~as-DP-----AklVLDai 543 (1060)
+|.+.+-| +..-..+.|=++.|.+..-|+ || |++.|..|
T Consensus 223 eGrnir~~--e~~tgvd~iiddtp~~v~ls~fdp~rreia~~~l~~l 267 (514)
T TIGR03319 223 EGRNIRAL--ETLTGVDLIIDDTPEAVILSGFDPVRREIARMALEKL 267 (514)
T ss_pred CcchHHHH--HHHhCceEEEcCCCCeEEecCCchHHHHHHHHHHHHH
Confidence 55666655 445556677777777755444 66 45555544
No 78
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.16 E-value=40 Score=38.70 Aligned_cols=9 Identities=56% Similarity=0.597 Sum_probs=3.4
Q ss_pred hhhhhhhhH
Q 001522 119 LQLKEGELN 127 (1060)
Q Consensus 119 l~~ke~~L~ 127 (1060)
+.++|-+||
T Consensus 39 ~~ekRdeln 47 (294)
T COG1340 39 LAEKRDELN 47 (294)
T ss_pred HHHHHHHHH
Confidence 333333333
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.66 E-value=27 Score=36.04 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 160 DQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 160 ~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
+.++.++.-+-+...+...+-+++-.+..-+.-..+.+...+....++.+|+..+.++...+-+++..+.+-+...+.+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555666666666666666666666666666666666555444444433
No 80
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.60 E-value=82 Score=41.43 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=14.4
Q ss_pred cchHHHHHHHhcccccCCC--cHHHHHHHHHhh
Q 001522 824 HIAAIRFICAFKLTDIAKP--EAIFKQYLDDNI 854 (1060)
Q Consensus 824 qIeAVrFi~aFgL~dkFpP--VpLLKsYL~daK 854 (1060)
.|+|-+++-..+..-.|-- -.+|+.-+++.+
T Consensus 761 ~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k 793 (1072)
T KOG0979|consen 761 NIEAERKIEKLEDNISFLEAREDLLKTALEDKK 793 (1072)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544443333322 145566555555
No 81
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.55 E-value=0.76 Score=48.23 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHHHHhhhccccccChHHHHHHHHhhhc-cc----chHHHHHHhCCchhhhHHHHHHHhcCccchHHHHHHHhccccc
Q 001522 765 LVFLQLLGTFELVASFNRVEIVELLWTISE-HK----QAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDI 839 (1060)
Q Consensus 765 ~aFLqLLa~FGI~seFd~deL~~Lv~~ia~-rk----qapeLc~sLGL~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dk 839 (1060)
...|+.+..|++.++ .-.+.-++++... +. -+...++.||..+ ..+|+.|+.+|+.++|++|+...+-++.
T Consensus 45 ~~~L~qllq~~Vi~D--Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIPD--SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccCC--cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 355777888888763 4444444444432 11 2344555555433 2466889999999999999999999999
Q ss_pred CCCcHHHHHH
Q 001522 840 AKPEAIFKQY 849 (1060)
Q Consensus 840 FpPVpLLKsY 849 (1060)
+||.-+|.+=
T Consensus 121 ~~~~~fLeAA 130 (167)
T PF07035_consen 121 VPARKFLEAA 130 (167)
T ss_pred CCHHHHHHHH
Confidence 9997776653
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.21 E-value=24 Score=40.38 Aligned_cols=12 Identities=17% Similarity=-0.136 Sum_probs=5.2
Q ss_pred hhhhhhhHHHHH
Q 001522 140 LDLKMKEVGLVE 151 (1060)
Q Consensus 140 ~~lK~kel~~~~ 151 (1060)
+..|..|-+=+.
T Consensus 133 l~aK~~WYeWR~ 144 (325)
T PF08317_consen 133 LEAKKMWYEWRM 144 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 83
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.18 E-value=56 Score=40.11 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhc
Q 001522 743 AMKLAVEWKTKM 754 (1060)
Q Consensus 743 AkklA~~WK~ki 754 (1060)
|..||.+.+.+|
T Consensus 478 ~~~la~~i~~~i 489 (514)
T TIGR03319 478 AVVLARDIAKKI 489 (514)
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 84
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.86 E-value=1.3 Score=55.44 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH
Q 001522 177 LKEKDLRKIRSSIEECEKELVMKEKHASSLQSL 209 (1060)
Q Consensus 177 ~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ 209 (1060)
..-++|+...+.++..+.+..+-++.++..+..
T Consensus 271 ~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~ 303 (722)
T PF05557_consen 271 EELKHLRQSQENVELLEEEKRSLQRKLERLEEL 303 (722)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666776666666555555544433
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.81 E-value=33 Score=39.39 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=10.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhH
Q 001522 179 EKDLRKIRSSIEECEKELVMKEKHASSL 206 (1060)
Q Consensus 179 eke~~~~~k~Ie~~~kel~~Ke~~~~~~ 206 (1060)
..++......|+...+++...+.++..+
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=9.5 Score=47.09 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred hheecchhchHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHH
Q 001522 36 LNFTVQWKDLEEHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVL 86 (1060)
Q Consensus 36 l~~~lqw~~le~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~ 86 (1060)
++.|+-|+-=-||---+...--+-.++..+|.+.+|.+..+.=- |+|-+.
T Consensus 330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~r 379 (652)
T COG2433 330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVER 379 (652)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHH
Confidence 67788898888999888888888889999999999888776332 455443
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.05 E-value=82 Score=39.48 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHH
Q 001522 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYD 225 (1060)
Q Consensus 166 ~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e 225 (1060)
....+-..++...+++++.+...|+....++++-...+..+..++++...+.+..++++.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666667777777777776666666555555555555555444444444444
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.04 E-value=68 Score=38.56 Aligned_cols=7 Identities=14% Similarity=0.117 Sum_probs=2.6
Q ss_pred cCCchhh
Q 001522 532 ACDPASL 538 (1060)
Q Consensus 532 asDPAkl 538 (1060)
|+-|+.+
T Consensus 336 A~AdG~V 342 (420)
T COG4942 336 AIADGRV 342 (420)
T ss_pred eecCceE
Confidence 3333333
No 89
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.86 E-value=0.16 Score=64.69 Aligned_cols=12 Identities=42% Similarity=0.393 Sum_probs=0.0
Q ss_pred hHhHhHHHHHHh
Q 001522 563 IRRTCILLLEQL 574 (1060)
Q Consensus 563 ~rrsCilLLEqL 574 (1060)
.|++|--=|+.|
T Consensus 519 ~Rr~~qr~l~~l 530 (859)
T PF01576_consen 519 TRRNHQRQLESL 530 (859)
T ss_dssp ------------
T ss_pred HHHhhHHHHHHH
Confidence 567766555554
No 90
>PRK12704 phosphodiesterase; Provisional
Probab=87.72 E-value=33 Score=42.10 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 001522 295 KKYFNDIE 302 (1060)
Q Consensus 295 ~~~~ke~e 302 (1060)
..+++.++
T Consensus 172 ~~~~~~~~ 179 (520)
T PRK12704 172 AVLIKEIE 179 (520)
T ss_pred HHHHHHHH
Confidence 33333333
No 91
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.08 E-value=1.2e+02 Score=40.28 Aligned_cols=270 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhhhhhHHHHH--------------H
Q 001522 166 NLIKDFCEQIELKEKDLRKIRSSIEECEKELVM--KEKHASSLQSLIEDYAEELESKEKLYDEIK--------------K 229 (1060)
Q Consensus 166 ~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~--Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~--------------k 229 (1060)
..++++..+++.+.-++.+.+.....-.-+=.- .++++......|+++..||+.++++|..++ +
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 230 SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309 (1060)
Q Consensus 230 e~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~ 309 (1060)
+.+.+..+|.-.-.+|...+..+......|..++.-+...-+.-.........+...++.+...+..++.-+..+.+.-.
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d 563 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDD 563 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhh
Q 001522 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCR-NEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESN 388 (1060)
Q Consensus 310 ~~~k~ie~r~kELe~KEkql~~~~ke~~~~~-~e~e~k~keL~s~~K~ie~~~kELe~kekqle~ie~~~kel~~e~EsK 388 (1060)
.-+.-|..--++|-..-+.+...+..--+.. ..+......-.+-.-..-.-+..+..+-.+.-.+..++-+..+.+...
T Consensus 564 ~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~ 643 (1041)
T KOG0243|consen 564 DNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQEV 643 (1041)
T ss_pred ccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001522 389 ELELDLIQTMAIGYLKQLKE-KEKQFHSLKEALDERWQDLEIKERKFEERVK---EF 441 (1060)
Q Consensus 389 eKele~~~~~~~~~~ke~e~-kekefeskEk~le~r~kELe~KekefE~rvK---E~ 441 (1060)
. ...+++....+.. ....+.+++..++.=.+......+.+..+.. ++
T Consensus 644 ~------k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~ 694 (1041)
T KOG0243|consen 644 L------KKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEI 694 (1041)
T ss_pred H------hhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
No 92
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.68 E-value=86 Score=38.24 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=86.0
Q ss_pred hhhhhhHHHHHHH-HHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 001522 78 ESKESDLVLAERR-IKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK 156 (1060)
Q Consensus 78 e~ke~~~~~~~~~-~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~ 156 (1060)
+.-|++|+..=.+ +..+++++++++-+.+.+-..|.|. .++..+...|......+-.-..++..= ++
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~-----------~~ 319 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENY-----------VN 319 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHH-----------HH
Confidence 4455666654333 3367788899988888777666664 223333332222211111000000000 11
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001522 157 SL-VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMK---EKHASSLQSLIEDYAEELESKEKLYDEIKKSII 232 (1060)
Q Consensus 157 ~~-~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~K---e~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e 232 (1060)
.+ +|-.+-=..+..+-.+++.||.++.+.+.-|.+..+++.-+ =-.++.+..+-+++..||+--.-+.+++.++|-
T Consensus 320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 22 22222235566667777777777777777777777765543 123344444444455555544444455555444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001522 233 QCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR 276 (1060)
Q Consensus 233 ~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r 276 (1060)
+..-.. .+..+.++-+=.++.+...+|..+
T Consensus 400 ~~~lea--------------q~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 400 SRKLEA--------------QGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred hHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 444444 344444444444555555555443
No 93
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.61 E-value=36 Score=37.25 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001522 205 SLQSLIEDYAEELESKEKLYDEIKKSIIQC 234 (1060)
Q Consensus 205 ~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~ 234 (1060)
.+...|+.+-++++.+.+.+++++..+..+
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.43 E-value=1.3e+02 Score=40.01 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHHHhhhccccccChHHH
Q 001522 757 GTLNSLEVLVFLQLLGTFELVASFNRVEI 785 (1060)
Q Consensus 757 ~~~~slea~aFLqLLa~FGI~seFd~deL 785 (1060)
|++.++.|+|+|=-+-+|.=++=|--||+
T Consensus 1054 GGEKTvAaLALLFaihsy~PaPFfvlDEi 1082 (1141)
T KOG0018|consen 1054 GGEKTVAALALLFAIHSYKPAPFFVLDEI 1082 (1141)
T ss_pred ccHHHHHHHHHHHHhccCCCCCceehhhH
Confidence 34578999999988888888888877765
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.32 E-value=43 Score=34.44 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 298 FNDIELKEREFNGIRKCIEKRSQEL 322 (1060)
Q Consensus 298 ~ke~e~KekEl~~~~k~ie~r~kEL 322 (1060)
..+++.++..|+......+.+..+|
T Consensus 110 ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 110 AEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444443344444333
No 96
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.30 E-value=59 Score=35.15 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001522 188 SIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLE 267 (1060)
Q Consensus 188 ~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e 267 (1060)
.|.+..+.....++.+..+..+...+++-|...+++.++.++.+..-.+... .+......+...++++.
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~-----------~L~~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ-----------SLQNLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 3444444444445556666666666777777777777777766665544331 22233334444566666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001522 268 SLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIE 302 (1060)
Q Consensus 268 ~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e 302 (1060)
...++.+.-..++.....+-+.+...|...+-++.
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555555555555555555544
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.04 E-value=1.1e+02 Score=38.19 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=10.0
Q ss_pred cCCchhhHHHhhhccC
Q 001522 532 ACDPASLVLDAMEGFY 547 (1060)
Q Consensus 532 asDPAklVLDaiegf~ 547 (1060)
+..+..+|+|.--|++
T Consensus 572 ~~~~~p~iiD~p~~~l 587 (650)
T TIGR03185 572 SGRRLPVIIDTPLGRL 587 (650)
T ss_pred cCCCCCEEEcCCcccc
Confidence 3445667777766665
No 98
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.36 E-value=0.31 Score=60.81 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=0.0
Q ss_pred hhhhhhhhHhhHHHHHHHHH---hhhhhhhhHHHHHhhh
Q 001522 119 LQLKEGELNLVKKSVEEWLE---KLDLKMKEVGLVEKSN 154 (1060)
Q Consensus 119 l~~ke~~L~~~~~~i~e~~~---~~~lK~kel~~~~~~~ 154 (1060)
|.....+..-.+|++..+.+ ..+-.+.+++.-.+.|
T Consensus 286 L~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKL 324 (713)
T PF05622_consen 286 LQAEAREARALRDELDELREKADRADKLENEVEKYKKKL 324 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555533 3333344444433333
No 99
>PRK00106 hypothetical protein; Provisional
Probab=84.35 E-value=1.2e+02 Score=37.74 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=11.7
Q ss_pred chhhHHHHHHHhhhhhhhhhhhHHHhh
Q 001522 503 TGKNLQLLLNQHLQKHDLVFGEISHTL 529 (1060)
Q Consensus 503 DgkgL~~~i~e~~k~~~~ir~Ei~~AL 529 (1060)
+|.+.+-|-. .-..+.|=++.|.+.
T Consensus 244 eGrNir~~E~--~tGvdliiddtp~~v 268 (535)
T PRK00106 244 EGRNIRTLES--LTGIDVIIDDTPEVV 268 (535)
T ss_pred CcchHHHHHH--HhCceEEEcCCCCeE
Confidence 4555554432 333444555555443
No 100
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=84.31 E-value=40 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 280 LDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQEL 322 (1060)
Q Consensus 280 l~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kEL 322 (1060)
+.-.-+.++...++.+-+-+-+.-|++|+......|....++=
T Consensus 86 v~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK 128 (159)
T PF04949_consen 86 VEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEK 128 (159)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444455555566666666666665554433
No 101
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.60 E-value=74 Score=34.87 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001522 266 LESLQRI 272 (1060)
Q Consensus 266 ~e~~~k~ 272 (1060)
+..+++.
T Consensus 142 l~~~r~~ 148 (302)
T PF10186_consen 142 LARRRRQ 148 (302)
T ss_pred HHHHHHH
Confidence 3333333
No 102
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.95 E-value=62 Score=36.96 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 159 VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 159 ~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
-|-.+||.++++|.++-.-++=++|...-.++-...+.+........+.++--.+++..+..++.-+-+.-++-.++-++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 34556788888888887777777777777777777776666666777777766667666777776666667777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001522 239 DCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274 (1060)
Q Consensus 239 ~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie 274 (1060)
.+.+..|.+-+.+|+-+..++..-+-.++--+...-
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777666666666666665555555555554444443
No 103
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=82.61 E-value=44 Score=32.62 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHH
Q 001522 99 ACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGL 149 (1060)
Q Consensus 99 ~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~ 149 (1060)
-.|+.++..+. ..|.+++.++...+..+..+...|.-++..|..
T Consensus 3 i~kkre~~~~~-------~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 3 IEKKREMFLVQ-------LALDTKREEIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 556666666666655555554444444444443
No 104
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.60 E-value=1.2e+02 Score=36.40 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001522 248 TQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKE 292 (1060)
Q Consensus 248 ~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~ 292 (1060)
....|..+.+.+..+-.++..+--.|..|+.++.+.+.+..-.+.
T Consensus 229 ~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leq 273 (499)
T COG4372 229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ 273 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555444444444333
No 105
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.59 E-value=1.3e+02 Score=37.12 Aligned_cols=28 Identities=7% Similarity=0.016 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHhhhhh
Q 001522 87 AERRIKECNFELACKEKQLELVRKRIGE 114 (1060)
Q Consensus 87 ~~~~~ee~~~el~~Kek~l~~~r~~i~E 114 (1060)
+..++.++.+.|-.+.-.||..-..|+.
T Consensus 145 l~~~y~~~rk~ll~~~~~~G~a~~~le~ 172 (569)
T PRK04778 145 LKDLYRELRKSLLANRFSFGPALDELEK 172 (569)
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHH
Confidence 3333444444444444444444433333
No 106
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=82.14 E-value=2.2 Score=49.30 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=38.4
Q ss_pred hhhccCCCCCcCCCCCCCCCCCcccccccccCCCCccCCCC---ccc--------cCCcccchhccccccccc-cCCCCC
Q 001522 974 QLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPG---VAL--------SGGQMQFDHIASNHLRVR-ANMGAG 1041 (1060)
Q Consensus 974 ~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~ 1041 (1060)
+.+-+| .|.+--+-..||+-.+...-|--.|.+||||- |.+ .++--.-|.+.+||.||+ ...-.|
T Consensus 306 ~~~lGN---si~q~m~m~~~pfn~~gd~hh~~~~~~Q~f~f~~dhlipva~s~~~~gdynLnfsiSSg~~gfNRGtLQSN 382 (447)
T PLN03106 306 QIQLGN---SIPQPISTNSHPFSSIGDHHHHHHHQHQHFSFVPDHLIPVATSNASGGDFNLNFTISSGLAGFNRGTLQSN 382 (447)
T ss_pred ccccCC---CCCCccccCCCcccccccccccccccccccCCcCCccccccccCCCCCccceeeEeecccccccccccccC
Confidence 335566 33333233333443333344445566777752 211 112223357889999984 333344
Q ss_pred cccccCCCcccccc
Q 001522 1042 QTSNVTGNQNLHHF 1055 (1060)
Q Consensus 1042 ~~~~~~~~~~~~~~ 1055 (1060)
-++++.+-+.||+|
T Consensus 383 S~sh~s~~~~lqr~ 396 (447)
T PLN03106 383 STSHQSLLPHLQRF 396 (447)
T ss_pred CCcccccchHHHhh
Confidence 44444455555555
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.78 E-value=69 Score=33.21 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 237 KLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 237 ~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
+-+..+++++..+..+.....++...+-.+...+.+-
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555544444444444443
No 108
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.49 E-value=1.6e+02 Score=37.14 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhh--hhhhHhhHHHHHHHHHhhh
Q 001522 81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLK--EGELNLVKKSVEEWLEKLD 141 (1060)
Q Consensus 81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~k--e~~L~~~~~~i~e~~~~~~ 141 (1060)
..|++-+++..++-..+|.+.......-|+.+-|-.+|++-. +-.++++...+---+.++|
T Consensus 14 ~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD 76 (629)
T KOG0963|consen 14 RFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEID 76 (629)
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888887666666666532 3334445444444433333
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.17 E-value=1.8e+02 Score=37.67 Aligned_cols=150 Identities=18% Similarity=0.236 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 001522 81 ESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVD 160 (1060)
Q Consensus 81 e~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~ 160 (1060)
|.+...++...+.-...=..-+....-+.+-+-||.+.|..-+.+-.+.... -+--|..|.+..+.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~------~~~~~s~e~e~~~~-------- 88 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHE------AVAKKSKEWEKIKS-------- 88 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH------HHHHHhHHHHHHHH--------
Confidence 3444444444444333333334455556667788887665554444443111 12224455555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 001522 161 QRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC 240 (1060)
Q Consensus 161 ~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~ 240 (1060)
+|+..+.++.+++....-+.....+.+..+.+-+..-.......+.+|..+...|++-+|+.-.++-++-...++|+-
T Consensus 89 --~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 89 --ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777766666666666677778888888888888888888888888887766
Q ss_pred hHHHHH
Q 001522 241 KKKELE 246 (1060)
Q Consensus 241 k~kEl~ 246 (1060)
+-.|.+
T Consensus 167 r~~E~~ 172 (769)
T PF05911_consen 167 RNEERE 172 (769)
T ss_pred HHHHHH
Confidence 655544
No 110
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.50 E-value=1.2e+02 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001522 422 ERWQDLEIKERKFEERVK 439 (1060)
Q Consensus 422 ~r~kELe~KekefE~rvK 439 (1060)
.+++.|.++.+....+.+
T Consensus 242 k~ik~l~~~~~~~~~~~~ 259 (294)
T COG1340 242 KKIKALRAKEKAAKRREK 259 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555544443333
No 111
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.25 E-value=92 Score=33.72 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHhhhHHH-HHHhhHHHHHHHhhhhhhhhhHHHHHH
Q 001522 326 EKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLC-VIENSAAELSDECESNELELDLIQTMA 399 (1060)
Q Consensus 326 Ekql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~kekqle-~ie~~~kel~~e~EsKeKele~~~~~~ 399 (1060)
++++..+.-+.+.....|..-+.|-+.....|...+-++.-+----- ..++.+..+...+|.++.+|.+.....
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555555555555566666666655543321111 356667777777888887777655543
No 112
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.15 E-value=37 Score=37.62 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 194 KELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 194 kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
+++..|-.++..+..+|-.-++.++..++-+.+..++.+.....-....++|..|...|..+-..+..-+..-+.++..+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555566666666666666666666666666677777777777776655555444444444444
No 113
>PRK09039 hypothetical protein; Validated
Probab=80.15 E-value=1.3e+02 Score=35.21 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001522 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAE 215 (1060)
Q Consensus 173 ~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ 215 (1060)
.++..++++++.....|.....-|.........++..|..+-.
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~ 88 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA 88 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555555555555555554444444444444444444333
No 114
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.85 E-value=1.1e+02 Score=34.32 Aligned_cols=62 Identities=31% Similarity=0.274 Sum_probs=31.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001522 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRL 275 (1060)
Q Consensus 214 ~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~ 275 (1060)
..+|..-.++++....+-....-++.....+++.....+++........+..+.+.++.++.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 34444444555555444444444444445555555555555555555555555555555543
No 115
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.95 E-value=1.2e+02 Score=34.45 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 209 LIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 209 ~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
+.-++-++|++...++++....+....+++..-..++...+..|.+....|.....-|..|.|.+
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333433333334444444444444444444443
No 116
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.36 E-value=45 Score=36.97 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001522 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSI 252 (1060)
Q Consensus 173 ~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i 252 (1060)
.++..|-.+|.++...|-.....++..++++.....+++.+..|=..-..++-.+..+|...+.-+..-+.+-+..++.+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666555555544333333333333333333333333333333333333333
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 001522 253 IELSLELHLEEEKLESLQRI 272 (1060)
Q Consensus 253 ~e~~~ele~kEk~~e~~~k~ 272 (1060)
.-...++.-...++...+++
T Consensus 84 ~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444433
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.94 E-value=2.3e+02 Score=37.07 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 001522 205 SLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVR 274 (1060)
Q Consensus 205 ~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie 274 (1060)
+-+.-|.+..++...+.-+++++++.....+++.+++.+-+++. .+|+.+.-.+++..++.+.
T Consensus 456 ~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l-------~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 456 SAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL-------RQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 33333444555566666677777777777666666665554443 3444445455555555543
No 118
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.90 E-value=0.7 Score=57.73 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=19.7
Q ss_pred CCchhhhHHHHHHHhcCccchHHHHHHH
Q 001522 806 GFTDIVANFVRNLIGRKKHIAAIRFICA 833 (1060)
Q Consensus 806 GL~dkmpdiIq~LI~kGkqIeAVrFi~a 833 (1060)
+++..+++.|+.-|...+.|+|.==+.+
T Consensus 687 ~~~~~~~~~i~~~v~~~~siP~FLaalT 714 (722)
T PF05557_consen 687 EFSPELEDLIEFWVEERNSIPAFLAALT 714 (722)
T ss_dssp CCHHCTHHHHHHHTTTS--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 5667899999999999999998543333
No 119
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.61 E-value=0.73 Score=58.90 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHH
Q 001522 75 KEIESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSV 133 (1060)
Q Consensus 75 ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i 133 (1060)
.++...-..++..+..+..+.+....-..||..++..+++..+.-..-..+|......+
T Consensus 215 ~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~ 273 (859)
T PF01576_consen 215 SENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHEL 273 (859)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHH
Confidence 34444444455555555555565666667777777777777766555555555444333
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=30 Score=43.02 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.3
Q ss_pred hhhhhhhhhhhh
Q 001522 111 RIGECECELQLK 122 (1060)
Q Consensus 111 ~i~Ec~~El~~k 122 (1060)
.|+||......+
T Consensus 389 ~l~eal~~~~e~ 400 (652)
T COG2433 389 PLAEALSKVKEE 400 (652)
T ss_pred cHHHHHHHHHhh
Confidence 445554444333
No 121
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.65 E-value=96 Score=37.62 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001522 307 EFNGIRKCIEKRSQELTL 324 (1060)
Q Consensus 307 El~~~~k~ie~r~kELe~ 324 (1060)
+|++.++-++..+.+++.
T Consensus 329 qleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 445555555554444443
No 122
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=75.00 E-value=90 Score=38.62 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=80.6
Q ss_pred CchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCc--hhhhHHHHHHHhcCccchHHHHHHHh--
Q 001522 759 LNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFT--DIVANFVRNLIGRKKHIAAIRFICAF-- 834 (1060)
Q Consensus 759 ~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~--dkmpdiIq~LI~kGkqIeAVrFi~aF-- 834 (1060)
++.-+|+..|.-+..|| ....+.+++..++..+ .......|+.+++-. ..+-++++.|+..|+.+. +|+..+
T Consensus 212 G~~R~al~~Ldq~~~~~-~~~It~~~V~~vlg~~-~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~--~~l~~L~~ 287 (559)
T PRK05563 212 GGMRDALSILDQAISFG-DGKVTYEDALEVTGSV-SQEALDDLVDAIVEGDVAKALKILEELLDEGKDPN--RFIEDLIY 287 (559)
T ss_pred CCHHHHHHHHHHHHHhc-cCCCCHHHHHHHhCCC-CHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHH--HHHHHHHH
Confidence 45678999998888897 5567777777766533 334456777777554 366777888888777553 222111
Q ss_pred --------cccccCC----CcHHHHHHHHHhhhhhh-------hcCCCChHHHhHhhHHHHHHhHHHHHHhhhc--CCcc
Q 001522 835 --------KLTDIAK----PEAIFKQYLDDNISDIH-------RKGNNSSDAKVKAMDFEVNALTFLIECFKEN--KLES 893 (1060)
Q Consensus 835 --------gL~dkFp----PVpLLKsYL~daKka~~-------~kg~nS~~aq~eA~~KEl~ALraVIKCIEeh--KLEs 893 (1060)
....... +...+..+.+.++..+. ..-.........+.+..+..-.++++....- ....
T Consensus 288 ~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~~~~~~~~ 367 (559)
T PRK05563 288 YLRDLLLVKTSPELEILDESTENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEY 367 (559)
T ss_pred HHHHHHHHhhcCcccccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhccCCccc
Confidence 1111100 01112222222221100 0000000011112234444445566665532 2455
Q ss_pred ccchHHHHHHHHHHHHhhhhcc
Q 001522 894 SLLIENIKQRIVQLEMAKADCR 915 (1060)
Q Consensus 894 e~p~~~LkkRI~qLeK~kaekK 915 (1060)
..+++.|.+||.+|+..-..-+
T Consensus 368 ~~~~~~~~~~~~~l~~~~~~~~ 389 (559)
T PRK05563 368 DTELEVLLQRVEQLEQELKQLK 389 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHhcc
Confidence 5667899999999999886543
No 123
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.52 E-value=1.5e+02 Score=32.61 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 412 QFHSLKEALDERWQDLEIKERKFEERVKEFE 442 (1060)
Q Consensus 412 efeskEk~le~r~kELe~KekefE~rvKE~E 442 (1060)
.++..-+.+..++++-+.+.+-++-+|..++
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLe 171 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLE 171 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 3333444444455555555555554444443
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.74 E-value=1.5e+02 Score=37.94 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhHHHHH
Q 001522 326 EKQLKCVQESLEGCRNEFEEKENELISVE 354 (1060)
Q Consensus 326 Ekql~~~~ke~~~~~~e~e~k~keL~s~~ 354 (1060)
+.|...+..-+..-..++.+.++++..+.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 125
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=71.96 E-value=2e+02 Score=33.32 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 286 KLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKC 331 (1060)
Q Consensus 286 e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~ 331 (1060)
+-..+...++.....|+.++.-|..+.+..+..++=+..|=.+...
T Consensus 136 eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 136 ENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445677788889999999999999888777766555444444333
No 126
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.52 E-value=2.7e+02 Score=34.39 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=9.1
Q ss_pred CCChhHHHHHHHH
Q 001522 734 IMNPRVKGEAMKL 746 (1060)
Q Consensus 734 ~isp~vke~Akkl 746 (1060)
.+++.+++.|+.+
T Consensus 548 ~~t~~~~~~A~~l 560 (563)
T TIGR00634 548 EKSDLTLAHAQEL 560 (563)
T ss_pred CccHHHHHHHHHH
Confidence 5677777777765
No 127
>KOG3661 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.76 E-value=15 Score=45.78 Aligned_cols=125 Identities=22% Similarity=0.154 Sum_probs=66.8
Q ss_pred hhhhcCCcccCCCCCCCCCCCCCC--CCCCccCCCCCCCccCCCCchhhhc-cCCCCCcCCCCCCCCCCCcccccccccC
Q 001522 929 QLASRNNYNIGTSTPTNQPVPSHT--NQPQHSGINHSIGFSASREQPQLQN-NYKRPRIEPLTTRAYMPQIPASVNLHRS 1005 (1060)
Q Consensus 929 ~~~s~~~~~~~~s~~~~~~~~~~~--~q~~~~~~~~~~~~~~~~~~~~~~~-~~kr~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1060)
+.+-.|+-.|++-.-|-++.+.++ +|.-+-++-+++. -...+-|.+-. +-||||++|-.+-| .|-+.++|-..
T Consensus 158 q~~nmn~p~~~s~pgtvt~~~~~~t~Aqsnl~n~~~~~s-d~~~~~p~~~~p~rkrpr~d~~~~~p---~i~~~~~g~~G 233 (1019)
T KOG3661|consen 158 QNANMNNPMIKSEPGTVTALPLHPTRAQSNLWNPQGPLS-DGPGSLPLSIAPVRKRPRHDPGAPSP---GILQDSDGLSG 233 (1019)
T ss_pred hHhhccCCccccCCcceecCCCCCccccCCCcCCCCCCC-CCCCCcchhhccccCCCCCCCCCCCC---ccccccccccC
Confidence 566777888874322222222221 3333444444321 11222233333 35999999877766 67777888888
Q ss_pred CCCcc--CCCCccccCCcccch--hcccccc-------ccccCCCCCc--ccccCCCcccccccc
Q 001522 1006 SPTMQ--HGPGVALSGGQMQFD--HIASNHL-------RVRANMGAGQ--TSNVTGNQNLHHFQY 1057 (1060)
Q Consensus 1006 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~ 1057 (1060)
++.-+ .+|+.-++--|---| -||-|.- .|-||-|.|- ..|---+|--.|||-
T Consensus 234 ~~~~~~~~qq~Irf~k~QeeqW~plYDaN~~eL~~LqvhV~ADKGFNys~nDncFVnQKKNHFQv 298 (1019)
T KOG3661|consen 234 SYLDPYSNQQSIRFQKHQEEQWAPLYDANYKELPMLQVHVDADKGFNYSVNDNCFVNQKKNHFQV 298 (1019)
T ss_pred CccCcccCccceeccccchhccccccccCcCcccceEEEEecccCcccccCCceeeecccceeEE
Confidence 88776 666776666666666 4454431 1223332222 223334566668874
No 128
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.63 E-value=1.2e+02 Score=38.90 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001522 213 YAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKE 292 (1060)
Q Consensus 213 ~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~ 292 (1060)
..+||+.-..++..++..|+..+++++.+...++. +-....+...+-+.|.+.++..+.....++....++++.|++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~---~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES---QKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444333331 111112223444555555555555555555555555555444
Q ss_pred H
Q 001522 293 E 293 (1060)
Q Consensus 293 ~ 293 (1060)
.
T Consensus 714 ~ 714 (717)
T PF10168_consen 714 I 714 (717)
T ss_pred h
Confidence 3
No 129
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=68.79 E-value=1.6 Score=54.64 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHH
Q 001522 86 LAERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 86 ~~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
.++.+++....|+..++..+...+
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~ 266 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLK 266 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.63 E-value=1.8e+02 Score=35.51 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001522 343 FEEKEN 348 (1060)
Q Consensus 343 ~e~k~k 348 (1060)
++++++
T Consensus 440 LqEQlr 445 (493)
T KOG0804|consen 440 LQEQLR 445 (493)
T ss_pred HHHHHH
Confidence 333333
No 131
>PF13166 AAA_13: AAA domain
Probab=68.27 E-value=3.2e+02 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=19.3
Q ss_pred chhheecc-------hhchHHHHHHhHHHHHHhh
Q 001522 34 SVLNFTVQ-------WKDLEEHLDISMKSLEKQS 60 (1060)
Q Consensus 34 ~~l~~~lq-------w~~le~h~~s~~~~~~~~~ 60 (1060)
+.-.||-| |..|+.||+..........
T Consensus 256 ~~CpfC~q~~l~~~~~~~l~~~f~~~~~~~~~~l 289 (712)
T PF13166_consen 256 DTCPFCQQEPLSEERKERLEKYFDEEYEKLIEEL 289 (712)
T ss_pred CcCCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777 6889999988776654443
No 132
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.52 E-value=2.9e+02 Score=33.25 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 299 NDIELKEREFNGIRKCIEKRSQELTLKEKQL 329 (1060)
Q Consensus 299 ke~e~KekEl~~~~k~ie~r~kELe~KEkql 329 (1060)
..+.+.+.+|....+.|+.+.++|...-...
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~ 212 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAA 212 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 133
>PRK10869 recombination and repair protein; Provisional
Probab=66.50 E-value=3.3e+02 Score=33.83 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=8.5
Q ss_pred CCChhHHHHHHHH
Q 001522 734 IMNPRVKGEAMKL 746 (1060)
Q Consensus 734 ~isp~vke~Akkl 746 (1060)
.+++.++..|+.+
T Consensus 538 ~~t~~~~~~A~eL 550 (553)
T PRK10869 538 EVTRNTLANAKEL 550 (553)
T ss_pred CCCHHHHHHHHHH
Confidence 4566667777665
No 134
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.07 E-value=3.2e+02 Score=33.51 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHhhhhhhHHH
Q 001522 168 IKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIK---KSIIQCETKLDCKKKE 244 (1060)
Q Consensus 168 ~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~---ke~e~~~k~l~~k~kE 244 (1060)
+.++..+++.- .++.+.++--.+.=++|+++.+++++.++++|-. +.+|+.-++... --++....+++...+.
T Consensus 233 ~eel~eq~een-eel~ae~kqh~v~~~ales~~sq~~e~~selE~l---lklkerl~e~l~dgeayLaKL~~~l~~~~~~ 308 (521)
T KOG1937|consen 233 VEELTEQNEEN-EELQAEYKQHLVEYKALESKRSQFEEQNSELEKL---LKLKERLIEALDDGEAYLAKLMGKLAELNKQ 308 (521)
T ss_pred HHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHhHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 56666666555 5566667777788888899999999888888733 333443333221 1111111111111111
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 245 LELTQTSIIELSLELHLEEEKLESLQ----------RIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKC 314 (1060)
Q Consensus 245 l~~~e~~i~e~~~ele~kEk~~e~~~----------k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ 314 (1060)
..-...+.+..+.-+..+..++.... ..|..-+..|.+...+....+..-..++++++.--+..- ++.
T Consensus 309 ~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~--rk~ 386 (521)
T KOG1937|consen 309 MEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ--RKV 386 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH--HHH
Confidence 11111222222222222222222222 223223333444444444444444555666665555433 777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001522 315 IEKRSQELTLKEKQLKC 331 (1060)
Q Consensus 315 ie~r~kELe~KEkql~~ 331 (1060)
+..|++|+-.+-+..+.
T Consensus 387 ytqrikEi~gniRKq~~ 403 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQ 403 (521)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 78888888766655443
No 135
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.86 E-value=4.5e+02 Score=35.19 Aligned_cols=48 Identities=31% Similarity=0.409 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHH
Q 001522 84 LVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLE 138 (1060)
Q Consensus 84 ~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~ 138 (1060)
+-+++.+|--..-|++.|=..+-.+| -||+-.+.++.-.++++++|.-
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr-------~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLR-------NELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33667777777777777765555554 7888888888888888887744
No 136
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.15 E-value=3.4e+02 Score=33.12 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=5.7
Q ss_pred HHHHHHHHhhc
Q 001522 744 MKLAVEWKTKM 754 (1060)
Q Consensus 744 kklA~~WK~ki 754 (1060)
+++...||.+.
T Consensus 384 k~~~~~~kk~E 394 (438)
T COG4487 384 KAIIRAWKKRE 394 (438)
T ss_pred HHHHHHHHHHH
Confidence 44555565544
No 137
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.67 E-value=3.6e+02 Score=33.32 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=5.8
Q ss_pred CchhhHHHhhh
Q 001522 534 DPASLVLDAME 544 (1060)
Q Consensus 534 DPAklVLDaie 544 (1060)
+|.-+|+|-+.
T Consensus 462 ~~~~lilDEp~ 472 (563)
T TIGR00634 462 AVTTLIFDEVD 472 (563)
T ss_pred CCCEEEEECCC
Confidence 45566666443
No 138
>PRK10869 recombination and repair protein; Provisional
Probab=63.10 E-value=3.8e+02 Score=33.33 Aligned_cols=23 Identities=4% Similarity=-0.062 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHH
Q 001522 87 AERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 87 ~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
...++.+++.++....++|..++
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~ 177 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQ 177 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.06 E-value=87 Score=36.09 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 001522 202 HASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETK 237 (1060)
Q Consensus 202 ~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~ 237 (1060)
.+..++.+.+++.+||+..+++.++..+++...+.+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555544444444333
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=62.63 E-value=1.8e+02 Score=33.44 Aligned_cols=87 Identities=23% Similarity=0.250 Sum_probs=50.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 231 IIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNG 310 (1060)
Q Consensus 231 ~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~ 310 (1060)
|...+.+++..+||-.-++=+++.+-..|+--.++++....++..-.+++-++...++.++...+.+.-++.+|+-++..
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 33444444444444444444455555555555555666666665555555566666666777777777777777777666
Q ss_pred HHHHHHH
Q 001522 311 IRKCIEK 317 (1060)
Q Consensus 311 ~~k~ie~ 317 (1060)
.++.+..
T Consensus 100 lEgQl~s 106 (307)
T PF10481_consen 100 LEGQLNS 106 (307)
T ss_pred HHHHHHH
Confidence 5544433
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.12 E-value=2.4e+02 Score=30.66 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCK 241 (1060)
Q Consensus 162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k 241 (1060)
+.|.+.+.++...+.....|....+..=--..+.|..-+..=..+-..|..+.+|+.....++-..+.......+++...
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444444333322223333222222233333455666666666666555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 001522 242 KKELELTQTSIIE 254 (1060)
Q Consensus 242 ~kEl~~~e~~i~e 254 (1060)
..++....+.+.-
T Consensus 95 ~~el~k~~~~l~~ 107 (194)
T PF15619_consen 95 DEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.09 E-value=3.8e+02 Score=32.96 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHhhhhhHHHHHH-------------
Q 001522 167 LIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA----EELESKEKLYDEIKK------------- 229 (1060)
Q Consensus 167 ~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~----~ELE~Kek~~e~~~k------------- 229 (1060)
.+..+..... -..++-...+.+.+....++.-....+..+.+..+|- .-|..|||-++.++.
T Consensus 195 ~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~ 273 (511)
T PF09787_consen 195 ERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS 273 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch
Confidence 3444444444 2234444555555555555555555555555555442 556677777776664
Q ss_pred -HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 230 -SIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 230 -e~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
+++..+.+.+-...+++..+.+|..+..+++..+.++.+....+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~ 318 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESF 318 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 13333334444445555555555555555555555544444333
No 143
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.83 E-value=4e+02 Score=33.22 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCchhhhHHHHHHHhcCccchHHHHHHHhcccc
Q 001522 759 LNSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTD 838 (1060)
Q Consensus 759 ~~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~d 838 (1060)
++.-.++..|+-++.|+ ....+.+.+..++.... ...+-++|+.+.. |..-.|++++..+ +..
T Consensus 213 Gdlr~al~~LekL~~y~-~~~It~e~V~~ll~~s~--------------~~~vf~Lidal~~-~d~~~al~~l~~L-~~~ 275 (585)
T PRK14950 213 GSMRDAENLLQQLATTY-GGEISLSQVQSLLGISG--------------DEEVKALAEALLA-KDLKAALRTLNAV-AAD 275 (585)
T ss_pred CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHhcCCC--------------HHHHHHHHHHHHc-CCHHHHHHHHHHH-HHc
Confidence 45668888898888886 23455555555544322 1233444444433 4455555555444 234
Q ss_pred cCCCcHHHHHHHHHhhhh
Q 001522 839 IAKPEAIFKQYLDDNISD 856 (1060)
Q Consensus 839 kFpPVpLLKsYL~daKka 856 (1060)
+..|+.||...++..+..
T Consensus 276 g~~~~~il~~L~~~lR~L 293 (585)
T PRK14950 276 GADLRQFTRDLVEYLRQV 293 (585)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 556777777666666643
No 144
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.71 E-value=3.8e+02 Score=32.91 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHhHHHH
Q 001522 80 KESDLVLAERRIKECNFELACKEKQLELV 108 (1060)
Q Consensus 80 ke~~~~~~~~~~ee~~~el~~Kek~l~~~ 108 (1060)
...+.-.+..++.++-.|+...+.++..+
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666555
No 145
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.28 E-value=2.5e+02 Score=33.29 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHhhhhhhHHHHHHH
Q 001522 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDE----IKKSIIQCETKLDCKKKELELT 248 (1060)
Q Consensus 173 ~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~----~~ke~e~~~k~l~~k~kEl~~~ 248 (1060)
++|.. |++.++..-......+..=..+|..+..+|....+.+++.||.+-. ...+......++....+.....
T Consensus 216 kDWR~---hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRS---HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543 3333333333334444445556666667777666777777665443 2333333333343333333334
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001522 249 QTSIIELSLELHLEEEKLESLQRIVRLRE 277 (1060)
Q Consensus 249 e~~i~e~~~ele~kEk~~e~~~k~ie~r~ 277 (1060)
-..+.++..+|...-.+++.+..+++.|-
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444444443
No 146
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.04 E-value=2.6e+02 Score=34.42 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=18.2
Q ss_pred ccccchHHHHHHHHHHHHhhhhc
Q 001522 892 ESSLLIENIKQRIVQLEMAKADC 914 (1060)
Q Consensus 892 Ese~p~~~LkkRI~qLeK~kaek 914 (1060)
..+.+.+.|-.||..||+.....
T Consensus 370 ~~~~~~~~l~~r~~~le~~~~~~ 392 (484)
T PRK14956 370 LTYPSLAGLLDKINHLILMVQGS 392 (484)
T ss_pred cccCCHHHHHHHHHHHHHHhcCC
Confidence 44456789999999999988754
No 147
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=59.58 E-value=2.8e+02 Score=30.61 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhhhhhh
Q 001522 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEE-LESKEKLYDEIKKSIIQCETKLDCK 241 (1060)
Q Consensus 163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~E-LE~Kek~~e~~~ke~e~~~k~l~~k 241 (1060)
.+...+..+-.+...++.+...+++.++..... -.+...+-.+++..+.. ++.++++......++...-+..+..
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~----~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~ 81 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKE----NQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQA 81 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHH
Confidence 344455555555555555555555555543333 22333333333333222 3345555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001522 242 KKELELTQTSIIELSLELHLEEEKLESLQR 271 (1060)
Q Consensus 242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k 271 (1060)
-..|++++.+|....+..+--..-+++..+
T Consensus 82 ~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 82 YADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666665544444444444
No 148
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.36 E-value=4.9e+02 Score=33.14 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhccccccChHHHHHHH
Q 001522 762 LEVLVFLQLLGTFELVASFNRVEIVELL 789 (1060)
Q Consensus 762 lea~aFLqLLa~FGI~seFd~deL~~Lv 789 (1060)
-.|+..|.-++.+|-. ..+.+.+..++
T Consensus 215 R~Al~lLeqll~~g~~-~It~d~V~~~l 241 (624)
T PRK14959 215 RDSMSLLGQVLALGES-RLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHHHHhcCC-CcCHHHHHHHh
Confidence 3566666433333321 34455554444
No 149
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=57.93 E-value=1.7e+02 Score=35.64 Aligned_cols=257 Identities=18% Similarity=0.244 Sum_probs=121.1
Q ss_pred hhhhhhhHHHh----hhhcCCchhhHHHhhhccCCCCCCCCCcccchhHhHhHhHHHHHHhhhcCCCC-ChhhHHHHHHH
Q 001522 518 HDLVFGEISHT----LTKACDPASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEI-NPQVRDEAMKV 592 (1060)
Q Consensus 518 ~~~ir~Ei~~A----L~~asDPAklVLDaiegf~~~~~~~~d~e~~~~~~rrsCilLLEqL~~isp~i-~~~VkeeA~kL 592 (1060)
.+.+|--+... ...+++-+..|.++ |++..-....+ .+...++-+|+-+|-+|.. +|.- .-=++.-..+.
T Consensus 173 ~~~vR~Rv~el~v~i~~~S~~~~~~~~~s--gll~~ll~eL~--~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~ 247 (503)
T PF10508_consen 173 SDIVRCRVYELLVEIASHSPEAAEAVVNS--GLLDLLLKELD--SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDK 247 (503)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHhc--cHHHHHHHHhc--CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHH
Confidence 34455555543 23445555555541 34332222222 2567889999999999977 3332 11122222222
Q ss_pred HHHHHHhhhhcccch-hhHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhhhHHHHhhhhhhhhhhcccccCccch---
Q 001522 593 AGEWKKKMRVAEDNS-LEVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLGFAEKAHGLQCSTTREA--- 668 (1060)
Q Consensus 593 A~~WK~~~~~~~en~-levLGFL~lla~ygL~s~FD~dEll~L~~~va~~~~ap~L~~~LG~~~k~~~~~cst~~~~--- 668 (1060)
=... +....++| +..+-+..++..||-...++...+...+ |. |.+...+...+.+...
T Consensus 248 L~~~---l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~---------p~------~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 248 LSNL---LQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY---------PA------FLERLFSMLESQDPTIREV 309 (503)
T ss_pred HHHH---HhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH---------HH------HHHHHHHHhCCCChhHHHH
Confidence 2222 22223333 3333222222333333333555544322 11 2222222223333222
Q ss_pred -hhhhcccccCCCChhhHHHhh-hcCCCchhhHHHHHHhhhhcCCCCCccchhhhHHHHHHhhhhcCCCChhHHHHHHHH
Q 001522 669 -RSCLSLLNKHDLGHNEVLQLL-HLAPDPAMFVLDFIQHWKSQGTGFEEDNVKCCILVLEKLKEVLPIMNPRVKGEAMKL 746 (1060)
Q Consensus 669 -~~~~~~l~~~~~~~~Ev~~AL-~~ApDPAklVLdaV~~f~~~~~g~~~~~~~~CVLLLE~L~~i~p~isp~vke~Akkl 746 (1060)
-.+++.+++.. +=..+| ...++..+-||.++.++...+ ...-.+..|.+|..+....++..-++...+
T Consensus 310 A~dtlg~igst~----~G~~~L~~~~~~~~~~~l~~~~~~~~~~------~~~lk~r~l~al~~il~~~~~~~~~~i~~~ 379 (503)
T PF10508_consen 310 AFDTLGQIGSTV----EGKQLLLQKQGPAMKHVLKAIGDAIKSG------STELKLRALHALASILTSGTDRQDNDILSI 379 (503)
T ss_pred HHHHHHHHhCCH----HHHHHHHhhcchHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 12344455332 222233 444556677788777665432 123455567777766443344556667799
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHhhhccccccChHH--HHHHHHhhhccc-chHHHHHHhCCchhhhHHHHHHHhcCc
Q 001522 747 AVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFNRVE--IVELLWTISEHK-QAPETCRALGFTDIVANFVRNLIGRKK 823 (1060)
Q Consensus 747 A~~WK~ki~~~~~~slea~aFLqLLa~FGI~seFd~de--L~~Lv~~ia~rk-qapeLc~sLGL~dkmpdiIq~LI~kGk 823 (1060)
...|=..++...... .|+.++ -.-|.+=. .++++..++.|. ....+| ..|+||+.|.++.-
T Consensus 380 ~~~w~~~~~~~~~~~----~l~~~~-----~qPF~elr~a~~~~l~~l~~~~Wg~~~i~-------~~~gfie~lldr~~ 443 (503)
T PF10508_consen 380 TESWYESLSGSPLSN----LLMSLL-----KQPFPELRCAAYRLLQALAAQPWGQREIC-------SSPGFIEYLLDRST 443 (503)
T ss_pred HHHHHHHhcCCchHH----HHHHHh-----cCCchHHHHHHHHHHHHHhcCHHHHHHHH-------hCccHHhhhcCCCC
Confidence 999999887654322 222221 23333222 344555555553 233344 46788888877654
No 150
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=56.95 E-value=3e+02 Score=30.15 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=54.5
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001522 117 CELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKE 195 (1060)
Q Consensus 117 ~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~ke 195 (1060)
++-+.-+..||-+.+.|++. ++.+.+++ .--..++..++++...+..-...++...+.+|...++
T Consensus 42 k~aKk~rA~LNKl~k~id~~--------------RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 42 KDAKKDRAELNKLKKAIDDK--------------RKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567788777666643 44444444 4555677788888888887777877777777777665
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhhHH
Q 001522 196 LVMKEKHASSLQSLIEDYAEELESKEKLYD 225 (1060)
Q Consensus 196 l~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e 225 (1060)
..+..+..-|.+...+...-...|+
T Consensus 108 -----~k~~~i~~~~~~~~~~~~v~~~~fe 132 (215)
T PF07083_consen 108 -----EKREKIKEYFEEMAEEYGVDPEPFE 132 (215)
T ss_pred -----HHHHHHHHHHHHHHHHcCCChHHHh
Confidence 3344444445555544443333444
No 151
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.56 E-value=1.8e+02 Score=36.50 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHhhhh
Q 001522 896 LIENIKQRIVQLEMAKAD 913 (1060)
Q Consensus 896 p~~~LkkRI~qLeK~kae 913 (1060)
+...|..||.+|+.....
T Consensus 368 ~~~~~~~~~~~le~~~~~ 385 (584)
T PRK14952 368 AESALLQRVERIETRLDM 385 (584)
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 357789999999877653
No 152
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=52.63 E-value=6.8e+02 Score=33.01 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 001522 204 SSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKL 238 (1060)
Q Consensus 204 ~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l 238 (1060)
...+.+...+.-++|+|.|+++.+.++++.....+
T Consensus 998 kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 998 KEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556667777777777766666655544
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.62 E-value=4.3e+02 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001522 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE 258 (1060)
Q Consensus 216 ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~e 258 (1060)
||..-..++.+...+++...+++.....++..+...|++...+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433333
No 154
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.17 E-value=5.6e+02 Score=31.91 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=22.2
Q ss_pred HhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhh
Q 001522 103 KQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKL 140 (1060)
Q Consensus 103 k~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~ 140 (1060)
..+..+++.-.+|.+.+-..+..++.--+.+++.-..+
T Consensus 136 ~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 136 EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Confidence 34444555555555777777777777666666554333
No 155
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=51.91 E-value=3.2e+02 Score=29.00 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 361 SEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQLKEKEKQFHSLKEALDERWQDLEIKE 431 (1060)
Q Consensus 361 ~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~~~~~~~~ke~e~kekefeskEk~le~r~kELe~Ke 431 (1060)
-+|++.-++.+|.+-..++-+-.-+..|++++..-++.|.+..++ ...|-.++.+|-...
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke-----------K~~Lv~~L~eLv~eS 142 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE-----------KAQLVTRLMELVSES 142 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345555566666666666777777788998888888888776654 234555666655543
No 156
>PF15427 S100PBPR: S100P-binding protein
Probab=51.87 E-value=6.8 Score=45.07 Aligned_cols=126 Identities=21% Similarity=0.102 Sum_probs=66.4
Q ss_pred hhhHhhhhcCCcccCCCCCCCCCCCCCC-CCCCccCCCCCCCccCCCCchhhhccCCCCCcCCCCCCCCCCCccc-----
Q 001522 925 TIQLQLASRNNYNIGTSTPTNQPVPSHT-NQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPA----- 998 (1060)
Q Consensus 925 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~-~q~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~----- 998 (1060)
+|....+.+|...+.+|+....|++.+. +++.++++.-.- -+..-..-.|-+-+.+-.+|.-+|+|.+
T Consensus 230 tp~~~ss~~n~gshk~s~e~r~pv~sSss~k~~vldkDsgk------~k~~EkRlGKviPvLq~k~Rt~vp~fSqseLE~ 303 (386)
T PF15427_consen 230 TPSTGSSWRNGGSHKSSCEMRSPVVSSSSKKQDVLDKDSGK------MKGHEKRLGKVIPVLQTKTRTNVPTFSQSELEQ 303 (386)
T ss_pred CCCccccccCcccccCCceecccccccccccceeeccccch------hhhhhhhcccccccccccccccCCccchHHHHH
Confidence 3333334566666888888888877765 444566653210 0000001111122223334433344433
Q ss_pred -------ccccccCCCC-ccCCCCccc-------cCCcccch-----hcccccccccc----CCCCCcccccCCCccccc
Q 001522 999 -------SVNLHRSSPT-MQHGPGVAL-------SGGQMQFD-----HIASNHLRVRA----NMGAGQTSNVTGNQNLHH 1054 (1060)
Q Consensus 999 -------~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 1054 (1060)
.+..|+.-|+ +|-+|..-+ +.-|-+.| -+.|||-+||- -|.-.||---.++ -+|.
T Consensus 304 qK~iYl~~Vi~Hi~~p~~snqG~~gEL~aLMdqV~~~qn~~WQHPSDLT~RNY~rfRqkplqr~SLtqWv~rN~r-s~~R 382 (386)
T PF15427_consen 304 QKQIYLDSVIAHIEDPVDSNQGPLGELYALMDQVHHMQNPKWQHPSDLTMRNYARFRQKPLQRYSLTQWVDRNMR-SHHR 382 (386)
T ss_pred HHHHHHHHHHhhcCCCcccccchHHHHHHHHHHHHhccCCCCCChHHhhhhhhhhhhcCCccccCHHHHHHhcch-hhhh
Confidence 2344666552 233343211 33445666 46788888863 5778999877775 7888
Q ss_pred ccc
Q 001522 1055 FQY 1057 (1060)
Q Consensus 1055 ~~~ 1057 (1060)
||+
T Consensus 383 Fq~ 385 (386)
T PF15427_consen 383 FQR 385 (386)
T ss_pred hcc
Confidence 986
No 157
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.80 E-value=6.4e+02 Score=32.45 Aligned_cols=117 Identities=23% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001522 242 KKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQ- 320 (1060)
Q Consensus 242 ~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~k- 320 (1060)
.-+|+.|=+.|+|...+...+-.+++....++-. ..++.-.+....+..++..=+.++...+-.+.....
T Consensus 20 ~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~---------~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~ 90 (660)
T KOG4302|consen 20 LNELQKIWDEIGESETERDKKLLRLEQECLEIYK---------RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSII 90 (660)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3447777777777777776665555554444411 233333334455556666666666666666654321
Q ss_pred ------HHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHhHHHHHHh
Q 001522 321 ------ELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELK 367 (1060)
Q Consensus 321 ------ELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~~kELe~k 367 (1060)
.-.....+|.++...++....+..++.+++..+..+++.=|.+|--.
T Consensus 91 ~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 91 GEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12245567788888888888888888888888888888777776555
No 158
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.94 E-value=1.8e+02 Score=30.94 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001522 170 DFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQ 249 (1060)
Q Consensus 170 ~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e 249 (1060)
++.-++-....++......+......+..-+.++..++..|..+..+|.-|.+-++.++-++....-++...++.+...+
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555666666666667777777777777777777777776666655554444443
Q ss_pred HHH
Q 001522 250 TSI 252 (1060)
Q Consensus 250 ~~i 252 (1060)
..=
T Consensus 172 ~En 174 (194)
T PF08614_consen 172 EEN 174 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 159
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=50.81 E-value=5.7e+02 Score=31.60 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHhhhh---hHHHHHHHHHHHH
Q 001522 173 EQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLI----EDYAEELESKEK---LYDEIKKSIIQCE 235 (1060)
Q Consensus 173 ~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~i----e~~~~ELE~Kek---~~e~~~ke~e~~~ 235 (1060)
+-+..+..-+.-+++.+++++++-++-+-++..+.... |.|+.|++.|.| ++-++.+.+-.++
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKe 459 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKE 459 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhH
Confidence 33444444445555555555555555555555555542 678899999988 4556666655544
No 160
>PRK09039 hypothetical protein; Validated
Probab=50.52 E-value=4.8e+02 Score=30.60 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 001522 214 AEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLE 258 (1060)
Q Consensus 214 ~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~e 258 (1060)
..+|......+.+....|...+.+++..+..+..++..|.....+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444444443333
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.38 E-value=3.3e+02 Score=28.46 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 001522 173 EQIELKEKDLRKIRSSIE 190 (1060)
Q Consensus 173 ~ele~keke~~~~~k~Ie 190 (1060)
..+....++++..++.+.
T Consensus 88 ~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 162
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=49.10 E-value=3.4e+02 Score=28.44 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHH
Q 001522 65 SKIRLLDQRAKEIES-----KESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVE 134 (1060)
Q Consensus 65 ~~~~~le~r~ke~e~-----ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~ 134 (1060)
.....++.+.+..|. ..-||+-++.+...|..-++.+.++|..++..++--.--|-.-+..|..+.....
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 2368999999999999999999999998886665555444444444444433333
No 163
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.54 E-value=4.7e+02 Score=34.00 Aligned_cols=53 Identities=32% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001522 178 KEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKS 230 (1060)
Q Consensus 178 keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke 230 (1060)
-..+++.+-..++...++++.+..++.....+++.+-++++.+.+++++.+.+
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555544433
No 164
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=46.71 E-value=7.3e+02 Score=31.65 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhH
Q 001522 279 ELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLK-EKQLKCVQESLEGCRNEFEEKENELISVEKLI 357 (1060)
Q Consensus 279 el~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~K-Ekql~~~~ke~~~~~~e~e~k~keL~s~~K~i 357 (1060)
+...++..+...+.-+.+....++.+...+..-.+......-+++++ +.+......++..-..+|+. .+..|
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~-------aq~ri 251 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELED-------AQQRI 251 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33444445555566666777777777777766666666666666666 55555544444444444433 34444
Q ss_pred HHhHHHHHHhhhHH
Q 001522 358 DKCSEELELKKKHL 371 (1060)
Q Consensus 358 e~~~kELe~kekql 371 (1060)
..--.|.+.++-|+
T Consensus 252 ~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 252 VFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 165
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.69 E-value=2.6e+02 Score=32.37 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=2.7
Q ss_pred HhHHHHH
Q 001522 566 TCILLLE 572 (1060)
Q Consensus 566 sCilLLE 572 (1060)
+|-+||-
T Consensus 293 AlK~lLt 299 (314)
T PF04111_consen 293 ALKYLLT 299 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 166
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.50 E-value=7.4e+02 Score=31.64 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=12.7
Q ss_pred HHHHHHhhhHHHHHHhhHHHHHHHh
Q 001522 361 SEELELKKKHLCVIENSAAELSDEC 385 (1060)
Q Consensus 361 ~kELe~kekqle~ie~~~kel~~e~ 385 (1060)
..++...+++++..+..+..+...+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554433
No 167
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=1.1e+02 Score=37.31 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHHHhhhhccc
Q 001522 895 LLIENIKQRIVQLEMAKADCRR 916 (1060)
Q Consensus 895 ~p~~~LkkRI~qLeK~kaekKR 916 (1060)
|+=|.-++.-.+++|++..|.|
T Consensus 321 fSDDEkEaeak~~kKQrk~r~~ 342 (483)
T KOG2236|consen 321 FSDDEKEAEAKQMKKQRKRRSK 342 (483)
T ss_pred cchHHHHHHHHHHHHHhhcccc
Confidence 4445555556666665554444
No 168
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.93 E-value=9.8e+02 Score=32.94 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHH
Q 001522 86 LAERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 86 ~~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
....+.++-++|+++-=++++.+-
T Consensus 1461 as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777776666666554
No 169
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=45.84 E-value=4.6e+02 Score=29.04 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=37.9
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 001522 200 EKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENE 279 (1060)
Q Consensus 200 e~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~e 279 (1060)
+...+.-+..|.++.+++-.....+......-+....+.+.-+.++...-+.+.+--+.-+.-|+.+....++++--+..
T Consensus 101 eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 101 EERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence 33333334444455555555444444443333333333322222322222233333333333344444444444433333
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 001522 280 LDSKEEKLDAMKEEMKKY 297 (1060)
Q Consensus 280 l~~~~~e~~~~e~~~~~~ 297 (1060)
+...+.+-..+...++.+
T Consensus 181 l~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 181 LEEAKEKYEEAKKELDET 198 (205)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 170
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.12 E-value=8.3 Score=37.83 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=48.6
Q ss_pred CCccCCCCchhhhccCCCCCcCCCCCCCCCCCcccccccccCCCCccCCCCccccCCcccch-----hccccccccccCC
Q 001522 964 IGFSASREQPQLQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFD-----HIASNHLRVRANM 1038 (1060)
Q Consensus 964 ~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 1038 (1060)
.-.++....++..-+|=|+.++|..+||.+|||-- |.-|-||--.|+ |+-.-|+|.-|+-
T Consensus 38 ~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn---------------~d~Y~Gdye~F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 38 IDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFN---------------GDQYCGDYELFFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred eeccchhhhHHHHHhcCChhhcCCCCCCCCccccc---------------CccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 44466677788889999999999999998899887 777888888886 7777888875543
No 171
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.93 E-value=4.4e+02 Score=34.26 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=34.9
Q ss_pred HhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 218 ESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 218 E~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
..-..+++.+...++..+++++.+..+++.....++....+++.+.++++..+..+
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444677777777777777766666666666666666666666655555554444
No 172
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.88 E-value=3.1e+02 Score=35.58 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 220 KEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 220 Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
-+.+++.+..+++..+++++.+..+++.....+++...+++.+.++++..++.+
T Consensus 509 ~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555555544444
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.45 E-value=5.1e+02 Score=32.37 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCc--hhhhHHHHHHHhcCcc
Q 001522 760 NSLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFT--DIVANFVRNLIGRKKH 824 (1060)
Q Consensus 760 ~slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~--dkmpdiIq~LI~kGkq 824 (1060)
+--.|+..|.-+.+|+= ...+.+++..++..+.+. ..-.|+.++.-. ..+-.+++.|+..|..
T Consensus 213 ~lr~al~~Ldqliay~g-~~It~edV~~llG~~~~~-~l~~ll~al~~~d~~~al~~l~~l~~~G~~ 277 (576)
T PRK14965 213 SMRDSLSTLDQVLAFCG-DAVGDDDVAELLGVVDRR-LLLDISAAVFGRDTRALLEIVERVDEFGYN 277 (576)
T ss_pred CHHHHHHHHHHHHHhcc-CCCCHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34478888877777753 346677776665554432 344555555443 3555666666666655
No 174
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.37 E-value=79 Score=30.90 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhhhHHHHhhhh
Q 001522 609 EVLGFLHLLAAYGLGPSFDGIELESLLDIVAQHRQTSKLRQSLG 652 (1060)
Q Consensus 609 evLGFL~lla~ygL~s~FD~dEll~L~~~va~~~~ap~L~~~LG 652 (1060)
+.+=|.+|+--||+-+....++++.|+..+++|..|....+.+|
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG 71 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIG 71 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHcc
Confidence 45567889999999999999999999999999999999999887
No 175
>PRK12705 hypothetical protein; Provisional
Probab=42.55 E-value=7.7e+02 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV 273 (1060)
Q Consensus 222 k~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i 273 (1060)
+++.+++.++...+.++..++..|+.+.+.++....+|..+++++......+
T Consensus 70 ~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 70 QEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444444444444444444444444444433
No 176
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.38 E-value=5.7e+02 Score=29.39 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHhHHHHHHhhhHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHhHHH
Q 001522 357 IDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYLKQ 405 (1060)
Q Consensus 357 ie~~~kELe~kekqle~ie~~~kel~~e~EsKeKele~~~~~~~~~~ke 405 (1060)
|+++..||+-.+|.|.....-==...+|+|.-|.||...=...-.+...
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555553222111133556666555555444444333333
No 177
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=41.76 E-value=8.3e+02 Score=30.90 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHH
Q 001522 87 AERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLEN 166 (1060)
Q Consensus 87 ~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~ 166 (1060)
+++.|.-|.+-+...=..|+.+=.+...|. .-+|..+ .+-||.++|.|.-.+|+
T Consensus 6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~--------n~sqkeK------------------~e~DLKkEIKKLQRlRd 59 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSAN--------NVSQKEK------------------LESDLKKEIKKLQRLRD 59 (575)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--------ChhHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 566777777777777667776666666664 2233322 33456677788888999
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001522 167 LIKDFC--EQIELKEKDLRKIRSSIEECEKELVMKE 200 (1060)
Q Consensus 167 ~~~~~~--~ele~keke~~~~~k~Ie~~~kel~~Ke 200 (1060)
+|+--. .+++-| ..|-.-|++||-.|.++..=|
T Consensus 60 QIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vE 94 (575)
T KOG2150|consen 60 QIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVE 94 (575)
T ss_pred HHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 998877 567766 567777889999888765433
No 178
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.40 E-value=6.4e+02 Score=30.48 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=63.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001522 215 EELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM 294 (1060)
Q Consensus 215 ~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~ 294 (1060)
+||..-......+..+++..+.++ ..++......+.|-+-..+..|.++.+. ++.-.+|+..++-++..|++.|
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~---~~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQY---QREYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHH
Confidence 444444444444444444444444 4445555455555444555556665553 3555777778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 295 KKYFNDIELKEREFNGIRKCIEKRSQELT 323 (1060)
Q Consensus 295 ~~~~ke~e~KekEl~~~~k~ie~r~kELe 323 (1060)
.+...+ +-+++.+.+..+..|+..||
T Consensus 293 ~Yqs~e---RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 293 AYQSYE---RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHH---HHhHHHHHHHHHHHHHHHHH
Confidence 887655 55888888888888888887
No 179
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.19 E-value=6.8e+02 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.386 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 001522 290 MKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEK 346 (1060)
Q Consensus 290 ~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~~~~e~e~k 346 (1060)
+..+++..+.+|.....+|.+.+..+.....-+...-.+|..+..+++.-..+.+++
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666665555555555555555555554444444444
No 180
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.00 E-value=3.4e+02 Score=26.21 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=52.7
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 001522 47 EHLDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDLVLAERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 47 ~h~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
.-|..+...|...........++|+.-++....+=.++...-..+.-...++..|-.+|.---
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l 65 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL 65 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888888899999999999999999999888888888888888887777666
No 181
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=40.71 E-value=48 Score=38.79 Aligned_cols=99 Identities=25% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCChhhhHhhhhcCCcccCCCCCCCCCCCCCCCCCCccCCCCCCCccCCCCchhhhccCCCCCcCCCCCCCCC-CCccc
Q 001522 920 PAPSATIQLQLASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQLQNNYKRPRIEPLTTRAYM-PQIPA 998 (1060)
Q Consensus 920 ~~p~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~-~~~~~ 998 (1060)
++|.+..+..++.- ..+-.+-+|-..+++...+.| --+.|+|-+.+-|.+.+.--||--.|.-..|+| +.+..
T Consensus 379 ~~PP~e~~lala~e-~P~E~ggcP~~ie~~VpmPsP-----l~S~GsslspS~~ASSSlt~~pcSSPV~~k~llGssaSS 452 (561)
T KOG1103|consen 379 PAPPPEARLALAAE-FPTEKGGCPRAIEPAVPMPSP-----LMSIGSSLSPSLPASSSLTPRPCSSPVKKKPLLGSSASS 452 (561)
T ss_pred CCCCchhccccccc-CccccCCCCCCCCCCCCCCCc-----ccccccccCCCCcccccCCCCCCCCccccccccccccCC
Q ss_pred ccccccCCCCccCCCCcc--ccCCcccchhccccccccccCC
Q 001522 999 SVNLHRSSPTMQHGPGVA--LSGGQMQFDHIASNHLRVRANM 1038 (1060)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1038 (1060)
|++- |-.|-.|-||.||.-+.-.|||
T Consensus 453 --------------p~~qssyqvginqrfhaaRhkf~aqad~ 480 (561)
T KOG1103|consen 453 --------------PAVQSSYQVGINQRFHAARHKFAAQADM 480 (561)
T ss_pred --------------hhhhhhhhhcchhhhhhccchhhhcccC
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.56 E-value=1.2e+02 Score=40.27 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=18.5
Q ss_pred CchhhhHHHHHHHhcCccchHHHHHHH
Q 001522 807 FTDIVANFVRNLIGRKKHIAAIRFICA 833 (1060)
Q Consensus 807 L~dkmpdiIq~LI~kGkqIeAVrFi~a 833 (1060)
|.-++..+..-|-..|.--.|..|+--
T Consensus 664 l~~~~~~yanllasQG~~~~A~~~l~~ 690 (1049)
T KOG0307|consen 664 LAKKFSEYANLLASQGALAAAMSFLPL 690 (1049)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhhcCc
Confidence 444666777777777777777777643
No 183
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.47 E-value=2.7e+02 Score=34.29 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=24.7
Q ss_pred HhhHHHHHHhHHHHHHhhhcCCccccchHHHHHHHHHHHHhh
Q 001522 870 KAMDFEVNALTFLIECFKENKLESSLLIENIKQRIVQLEMAK 911 (1060)
Q Consensus 870 eA~~KEl~ALraVIKCIEehKLEse~p~~~LkkRI~qLeK~k 911 (1060)
....++|.+|+.=...+.-..-+.+--++.++..+.+|+.+-
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345677777765444333333333434667888888887665
No 184
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.34 E-value=1.2e+03 Score=32.25 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 001522 199 KEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLREN 278 (1060)
Q Consensus 199 Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~ 278 (1060)
.++.+..++.+|.++-.+|...+.++......+........+...+. .+..-..++..-+..+......++....
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~-----dL~~A~~~l~~A~~~~~~a~~~l~~a~~ 814 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDR-----SLRAAHRRAAEAERQAESAERELARAAR 814 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555544444333333333333322 2333334444444445555555555555
Q ss_pred hhhhHHHHHHHHHHHH
Q 001522 279 ELDSKEEKLDAMKEEM 294 (1060)
Q Consensus 279 el~~~~~e~~~~e~~~ 294 (1060)
++......+......+
T Consensus 815 ~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 815 KAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444444
No 185
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.42 E-value=3.8e+02 Score=30.19 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=10.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhH
Q 001522 182 LRKIRSSIEECEKELVMKEKHASSL 206 (1060)
Q Consensus 182 ~~~~~k~Ie~~~kel~~Ke~~~~~~ 206 (1060)
|++++++-+..-++|+.+|.++...
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333333
No 186
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.84 E-value=7.3e+02 Score=29.11 Aligned_cols=219 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHHhhhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 001522 77 IESKESDLVLAERRIKECNFELACKEKQLELVRKRIGECECELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDK 156 (1060)
Q Consensus 77 ~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r~~i~Ec~~El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~ 156 (1060)
+|.||+|+++..+==....+.=..-..+...+. .+|.....++.+.+-+|. ...+|=.+-.+...
T Consensus 71 LeEkerDLelaA~iGqsLl~~N~~L~~~~~~le-------~~L~~~~e~v~qLrHeL~--------~kdeLL~~ys~~~e 135 (306)
T PF04849_consen 71 LEEKERDLELAARIGQSLLEQNQDLSERNEALE-------EQLGAALEQVEQLRHELS--------MKDELLQIYSNDDE 135 (306)
T ss_pred HHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHHhcCcHhh
Q ss_pred hhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 001522 157 SLVDQRRLE---------------NLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKE 221 (1060)
Q Consensus 157 ~~~~~~~~e---------------~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Ke 221 (1060)
+-.....-. ..++.+-+.++..+.+....+.+......+-.+.|.+ ....|.+.|++|-.--
T Consensus 136 e~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An 212 (306)
T PF04849_consen 136 ESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEAN 212 (306)
T ss_pred hcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcc
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001522 222 KLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDI 301 (1060)
Q Consensus 222 k~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~~~~~ke~ 301 (1060)
.++..+..+|..+......+.+|+.+...+|-..-..++..=-.-+..+..+..-..--..+..++..++....+...-+
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 001522 302 ELKEREFNGIRK 313 (1060)
Q Consensus 302 e~KekEl~~~~k 313 (1060)
..-..|+...++
T Consensus 293 ~EaQEElk~lR~ 304 (306)
T PF04849_consen 293 HEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHhhC
No 187
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.81 E-value=7.1e+02 Score=28.97 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=20.1
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhH
Q 001522 49 LDISMKSLEKQSNDADSKIRLLDQRAKEIESKESDL 84 (1060)
Q Consensus 49 ~~s~~~~~~~~~~~~~~~~~~le~r~ke~e~ke~~~ 84 (1060)
+..|...+..+..+|..+.-.|++..++.+..=..+
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555443333
No 188
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.18 E-value=7e+02 Score=32.49 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 001522 179 EKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEI 227 (1060)
Q Consensus 179 eke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~ 227 (1060)
..+++.+-..++...++++.+..+++....+++..-++|+.+.+++++.
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443
No 189
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.06 E-value=2.3e+02 Score=30.03 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522 170 DFCEQIELKEKDLRKIRSSIEECEKELVM-KEKHASSLQSLIEDYAEELESKEKLYDEIKK 229 (1060)
Q Consensus 170 ~~~~ele~keke~~~~~k~Ie~~~kel~~-Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~k 229 (1060)
-+..++...++..++.++..+...+.-+. ..........+|+++-+||+.++++++.+++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544443332211 1122223333444444444444444444333
No 190
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=36.39 E-value=4.5e+02 Score=30.70 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=52.6
Q ss_pred hhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 001522 124 GELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSL-VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKH 202 (1060)
Q Consensus 124 ~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~-~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~ 202 (1060)
.|.+.++.+|++ +-+..+-.-+.+-++| .....+.+.=+-+..||+..=-+|+...-........-..-.--
T Consensus 230 ~QM~s~~~nIe~-------~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 230 EQMNSMHKNIEQ-------KVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666652 3344444444445555 55555555555555666555555554443333222222222233
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHHH
Q 001522 203 ASSLQSLIEDYAEELESKEKLYDEI 227 (1060)
Q Consensus 203 ~~~~e~~ie~~~~ELE~Kek~~e~~ 227 (1060)
..++.+...+.+.|+|.+..+.+++
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777778888887777765
No 191
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.19 E-value=7.5e+02 Score=28.80 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=69.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHH-------------HHhhh
Q 001522 216 ELESKEKLYDEIKKSIIQCETKLDCKKKELELTQT--SIIELSLELHLEEEKLESLQRIVRL-------------RENEL 280 (1060)
Q Consensus 216 ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~--~i~e~~~ele~kEk~~e~~~k~ie~-------------r~~el 280 (1060)
-||+-.==+.++.+.|..=+.-+..-+.+.. ..+ .|.||...=.--..-.....+.+.. |.+-+
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~-~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kll 142 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETL-INNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLL 142 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666655555544444433 111 4555553221111112222222211 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHHh
Q 001522 281 DSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKC 360 (1060)
Q Consensus 281 ~~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~~ 360 (1060)
+++...+..--..|+.=.+.+.-....+.++.-.+..+...|...-.+|..++.+++.|..+ +|...+..+...
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~------eL~~lk~~l~~~ 216 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT------ELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH------HHHHHHHHHHHH
Confidence 33333333322233333333444444455555555566667777777777777777777532 233334444444
Q ss_pred HHHHHHhhhHHH
Q 001522 361 SEELELKKKHLC 372 (1060)
Q Consensus 361 ~kELe~kekqle 372 (1060)
..+++.+.+++.
T Consensus 217 ~~ei~~~~~~l~ 228 (312)
T smart00787 217 LQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHH
Confidence 445555555553
No 192
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.83 E-value=9.3e+02 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHHHHhhhhc
Q 001522 893 SSLLIENIKQRIVQLEMAKADC 914 (1060)
Q Consensus 893 se~p~~~LkkRI~qLeK~kaek 914 (1060)
-+.+++.|-.||..||+.-+..
T Consensus 356 ~~~~~~~~~~r~~~le~~~~~~ 377 (504)
T PRK14963 356 PAPAPADLTQRLNRLEKEVRSL 377 (504)
T ss_pred cCCCHHHHHHHHHHHHHHhccC
Confidence 4556799999999999998853
No 193
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.57 E-value=9.2e+02 Score=29.62 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 001522 320 QELTLKEKQLKCVQESLE 337 (1060)
Q Consensus 320 kELe~KEkql~~~~ke~~ 337 (1060)
++|..++.++....++..
T Consensus 64 kel~~~~~q~~~~k~~~~ 81 (438)
T COG4487 64 KELSQLEEQLINQKKEQK 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544444
No 194
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=35.39 E-value=7.2e+02 Score=28.69 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 418 EALDERWQDLEIKERKFEERVKEFELREKEI 448 (1060)
Q Consensus 418 k~le~r~kELe~KekefE~rvKE~ElkeKq~ 448 (1060)
..+..|+-+|+.+--.+..++.-+.+|.+.|
T Consensus 231 ~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 231 TEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555554444
No 195
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.15 E-value=5e+02 Score=26.41 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001522 211 EDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAM 290 (1060)
Q Consensus 211 e~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~~~~~e~~~~ 290 (1060)
+.+...+-.++.+++.....++....+++....++...+.......+++...+..+.....++.--..-+.....+...
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~- 133 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH- 133 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 291 KEEMKKYFNDIELKEREFNGIRKCI 315 (1060)
Q Consensus 291 e~~~~~~~ke~e~KekEl~~~~k~i 315 (1060)
++..|++|++.....+
T Consensus 134 ---------e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ---------ELRKKEREIEKLKERL 149 (151)
T ss_pred ---------HHHHHHHHHHHHHHHh
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.62 E-value=1.2e+03 Score=30.82 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=17.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001522 233 QCETKLDCKKKELELTQTSIIELSLELHLEEEKL 266 (1060)
Q Consensus 233 ~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~ 266 (1060)
+-....+.+.+|++.-.-..+.+....+...+++
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666665555555554444444333
No 197
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.61 E-value=1.4e+03 Score=31.56 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=58.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 236 TKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIV------RLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFN 309 (1060)
Q Consensus 236 k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~i------e~r~~el~~~~~e~~~~e~~~~~~~ke~e~KekEl~ 309 (1060)
..|-.-..+++-.-+.|.+.+..|-..+-.+..-+-.| .+++++..+ .-+.++..++..+.-|+.-++-..
T Consensus 1504 l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~---~A~~v~~~ae~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1504 LELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARS---RAEDVKGQAEDVVEALEEADVAQG 1580 (1758)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666667777777777766666654433333 223322222 223455566677777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001522 310 GIRKCIEKRSQELTLKEKQLKCVQESLEGCR 340 (1060)
Q Consensus 310 ~~~k~ie~r~kELe~KEkql~~~~ke~~~~~ 340 (1060)
..++-|+.-...+..-...|..++.+...-+
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677776655555555666666665554433
No 198
>PTZ00234 variable surface protein Vir12; Provisional
Probab=34.17 E-value=1.4e+02 Score=36.30 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=14.0
Q ss_pred HhhhcCCccccchHHHHHHHHHHHHhhhh
Q 001522 885 CFKENKLESSLLIENIKQRIVQLEMAKAD 913 (1060)
Q Consensus 885 CIEehKLEse~p~~~LkkRI~qLeK~kae 913 (1060)
|-.=++=+..|.+..| +..|++=+..
T Consensus 201 Cp~YfkC~~kYdP~~L---L~kL~kC~~~ 226 (433)
T PTZ00234 201 STDYADCSTKYNPNPL---ITELAKCKTQ 226 (433)
T ss_pred CCchhhcCcccCHHHH---HHHHhccccc
Confidence 4333344456777666 5666554443
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.39 E-value=4e+02 Score=29.28 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001522 159 VDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKE 195 (1060)
Q Consensus 159 ~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~ke 195 (1060)
+....++.++..+..++...+.+++.+.........+
T Consensus 86 s~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~ 122 (206)
T PRK10884 86 STTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE 122 (206)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566677777777777777777776665544444
No 200
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.38 E-value=5.3e+02 Score=28.83 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=33.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001522 200 EKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELE 246 (1060)
Q Consensus 200 e~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~ 246 (1060)
+.+........+++-.|++.+.++++..+++++-..||.++.-.|.+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eyd 196 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYD 196 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 33444555556677788888888888888888877777777766654
No 201
>KOG2433 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.32 E-value=20 Score=42.57 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCcccccccccCCCCccCCCCccccCCcccchh-cccccccccc-CCCCCcccccCCCcccccc
Q 001522 985 EPLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDH-IASNHLRVRA-NMGAGQTSNVTGNQNLHHF 1055 (1060)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1055 (1060)
-.-++|||.---+| -|+|+-.+-. +|. +-.-|+|.++ ++-.|----+.|+-+||||
T Consensus 341 nLP~srPyfrrsna-----------~~f~~E~~~~----~~~~irnpH~~l~ps~~~~G~iy~VnG~Y~YhHY 398 (577)
T KOG2433|consen 341 NLPSSRPYFRRSNA-----------LAFHSESARL----TKKLIRNPHLSLTPSYQPVGEIYTVNGPYNYHHY 398 (577)
T ss_pred CCCCCchhhhhhhh-----------hhcCCchhhc----ccccccCCccccCCCCCccceEEEecCcchhHHH
Confidence 34467887754444 3566655544 463 4456999987 5566777788999999999
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=1.3e+03 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=7.8
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 001522 181 DLRKIRSSIEECEKELVMK 199 (1060)
Q Consensus 181 e~~~~~k~Ie~~~kel~~K 199 (1060)
+|-+..++.+..-..+.+.
T Consensus 619 ~f~kL~kele~~i~k~ls~ 637 (970)
T KOG0946|consen 619 EFKKLFKELEGLIAKLLSS 637 (970)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3334444444444444333
No 203
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.54 E-value=1.2e+03 Score=29.65 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHhcCccchHHHHHHHhcccccCCCcHHHHHHHHHhhh
Q 001522 809 DIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNIS 855 (1060)
Q Consensus 809 dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dkFpPVpLLKsYL~daKk 855 (1060)
+.+-++++.+.. |+.-.|+..+..+ |..+++|.-||...+...|.
T Consensus 249 ~~iF~L~dai~~-~~~~~al~ll~~L-l~~g~~~~~iL~~L~~~fRd 293 (614)
T PRK14971 249 DYYFRLTDALLA-GKVSDSLLLFDEI-LNKGFDGSHFITGLASHFRD 293 (614)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 455566655544 5666777766554 36788887666655555553
No 204
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=31.53 E-value=91 Score=41.58 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=8.3
Q ss_pred chhheecchhchHH
Q 001522 34 SVLNFTVQWKDLEE 47 (1060)
Q Consensus 34 ~~l~~~lqw~~le~ 47 (1060)
|+-+.-+-|.+=||
T Consensus 320 s~~~~~~g~~~r~d 333 (1906)
T KOG4822|consen 320 SVCEGFLGWWPRED 333 (1906)
T ss_pred hhhhhhccCCcccc
Confidence 34566666766554
No 205
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=31.18 E-value=1.3e+02 Score=37.79 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=40.6
Q ss_pred cCCCCCCCCCCCcccccccccCCCCc--------cCCCCccccC----Ccccchhcc-ccccccccCCCCCcccccCC
Q 001522 984 IEPLTTRAYMPQIPASVNLHRSSPTM--------QHGPGVALSG----GQMQFDHIA-SNHLRVRANMGAGQTSNVTG 1048 (1060)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1048 (1060)
.-|.+++.|.|.-.++++-|+++++- +-.|+|.-+. |++ |+|.+ +|-.|.-..-.||-++-+..
T Consensus 730 f~~~~~~~~l~~t~ps~~~~~~~~~~~rk~k~lyAc~a~h~selsf~~gt~-f~nv~~S~e~Gwl~GtLnGktglip~ 806 (812)
T KOG1451|consen 730 FTSLTRQNYLRGTLPSSSMGTTYKYLSRRVKTLYACTADHHSELSFEPGTI-FTNVYESNEDGWLVGTLNGKTGLIPS 806 (812)
T ss_pred CCcccccccCCCCCCcccccCCCccccccccceeccCCCCcccccccCcce-eeeecccCCCCceeeecCCCcccCcc
Confidence 45667777777777788888887753 2234443333 333 44444 88888777777777776543
No 206
>KOG3629 consensus Guanine-nucleotide releasing factor [Signal transduction mechanisms]
Probab=30.84 E-value=2.3e+02 Score=35.33 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhhcccchhhHHHHHHHHHhhcCCCCCChHH
Q 001522 587 DEAMKVAGEWKKKMRVAEDNSLEVLGFLHLLAAYGLGPSFDGIE 630 (1060)
Q Consensus 587 eeA~kLA~~WK~~~~~~~en~levLGFL~lla~ygL~s~FD~dE 630 (1060)
+-|+.+-.-|-+.--.|--.+-.-+..|.++-.+|-...-.+.-
T Consensus 131 ~naI~il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~~e~r 174 (728)
T KOG3629|consen 131 QNAIRILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELR 174 (728)
T ss_pred HHHHHHHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCcccch
Confidence 44566677777776666433334455555555566555554433
No 207
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=30.73 E-value=1.1e+02 Score=32.62 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=37.8
Q ss_pred hhcCCcccCCCCCCCCCCCCCCCCCCccCCCCCCCccCCCCchh-hhccCCCCCcCCCCCCCCCCCcccccccccCCCCc
Q 001522 931 ASRNNYNIGTSTPTNQPVPSHTNQPQHSGINHSIGFSASREQPQ-LQNNYKRPRIEPLTTRAYMPQIPASVNLHRSSPTM 1009 (1060)
Q Consensus 931 ~s~~~~~~~~s~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1060)
++.+.++..+.+|...|+..+ +|+ +.|+.+.-++.++.+-.+ +++..|=++-.---+|+.||-|+|+.-.-++||..
T Consensus 75 ~~s~rsSlsS~SP~~SP~q~~-~~~-~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vsSPp~ 152 (165)
T PF14618_consen 75 SKSNRSSLSSNSPSSSPTQHQ-IQP-TPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVSSPPP 152 (165)
T ss_pred cccCccccccCCCCCCccccc-ccc-CCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccCCCCC
Confidence 344455555545544443211 222 444555443334333333 22333333221122356789999977778888855
Q ss_pred c
Q 001522 1010 Q 1010 (1060)
Q Consensus 1010 ~ 1010 (1060)
-
T Consensus 153 S 153 (165)
T PF14618_consen 153 S 153 (165)
T ss_pred C
Confidence 3
No 208
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=30.05 E-value=71 Score=40.53 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=6.9
Q ss_pred cccchHHHHHHhCCc
Q 001522 794 EHKQAPETCRALGFT 808 (1060)
Q Consensus 794 ~rkqapeLc~sLGL~ 808 (1060)
.+..-++....+.|+
T Consensus 752 ~~E~~~~~~~~~~LS 766 (1136)
T KOG4786|consen 752 KREEDDRIAAKLQLS 766 (1136)
T ss_pred hhccccchhhhhhhh
Confidence 333445555555543
No 209
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=29.94 E-value=91 Score=42.51 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-hhhccccccChHHHHHHH
Q 001522 762 LEVLVFLQLL-GTFELVASFNRVEIVELL 789 (1060)
Q Consensus 762 lea~aFLqLL-a~FGI~seFd~deL~~Lv 789 (1060)
...||+|.|= .+-|+|.-....+|..-|
T Consensus 1590 ~tTWalLllqii~sGtvdm~~nnelftTv 1618 (2220)
T KOG3598|consen 1590 VTTWALLLLQIIFSGTVDMVRNNELFTTV 1618 (2220)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHH
Confidence 4668887664 445777766666655533
No 210
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.93 E-value=9e+02 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 286 KLDAMKEEMKKYFNDIELKEREFNGIRKC 314 (1060)
Q Consensus 286 e~~~~e~~~~~~~ke~e~KekEl~~~~k~ 314 (1060)
|.+.++.+++.++..+..|-+=+.-.+.+
T Consensus 226 EyEklE~EL~~lY~~Y~~kfRNl~yLe~q 254 (267)
T PF10234_consen 226 EYEKLEEELQKLYEIYVEKFRNLDYLEHQ 254 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55556666666666666666654444333
No 211
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=29.42 E-value=58 Score=39.71 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred HHhhhcccchHHHHHHhCCch---hhhHHHHHHHhcCccchHHHHHH--HhcccccCCCcHHHHHH---HHHhhhhh--h
Q 001522 789 LWTISEHKQAPETCRALGFTD---IVANFVRNLIGRKKHIAAIRFIC--AFKLTDIAKPEAIFKQY---LDDNISDI--H 858 (1060)
Q Consensus 789 v~~ia~rkqapeLc~sLGL~d---kmpdiIq~LI~kGkqIeAVrFi~--aFgL~dkFpPVpLLKsY---L~daKka~--~ 858 (1060)
++.|+|---..+|.-+.|++| .--++|-++..+- +.-+-|-| ...=+..-||.+-|+.. +.+++... .
T Consensus 249 ~lvisWl~~gl~la~sVa~sDFC~~Pd~y~~~~~~~~--l~t~~~~~yl~c~~t~~NpF~qrL~~sq~al~~~~~~va~l 326 (526)
T KOG4433|consen 249 ALVISWLSLGLELASSVALSDFCVDPDDYVLNMVEEY--LSTDILLYYLACSPTHSNPFQQRLTESQRALNNMQSQVAGL 326 (526)
T ss_pred HHHHHHHHHhhhHHHHhhhhhhccChHHHHHHhhhcc--cchhHHhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666788888888887 5556777776665 55555554 55667777777777653 33444211 1
Q ss_pred -hc------C-CCChHHH---hHhhHHHHHHhHHHHHHhhh
Q 001522 859 -RK------G-NNSSDAK---VKAMDFEVNALTFLIECFKE 888 (1060)
Q Consensus 859 -~k------g-~nS~~aq---~eA~~KEl~ALraVIKCIEe 888 (1060)
+. + .++..|- -..+.+-+.+|-|...|=.=
T Consensus 327 ~r~~v~~f~~~q~~L~Av~~dLn~te~nl~qLtAlvdCr~l 367 (526)
T KOG4433|consen 327 LRMAVPLFPAAQDPLLAVQEDLNSTERNLHQLTALVDCRSL 367 (526)
T ss_pred HHhhhhccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 11 1 1122122 24466667777777777443
No 212
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.38 E-value=9.3e+02 Score=27.77 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 001522 202 HASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELD 281 (1060)
Q Consensus 202 ~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r~~el~ 281 (1060)
|+....+++.+.-+--.--|+.++..-..++...++++...-.|. .|++-...+++...-+.-.....|+
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~----------~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLT----------TEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhHHHHHHhHHH
Q 001522 282 SKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELTLKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDK 359 (1060)
Q Consensus 282 ~~~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe~KEkql~~~~ke~~~~~~e~e~k~keL~s~~K~ie~ 359 (1060)
.-.-+...|+.+..+++.+++-.-..|+--...-..-+.+++++ |+.-.+.+.-.++|+.+++.=|++++..-++
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr---LnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR---LNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 213
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.93 E-value=1.1e+03 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHhhHHHHHHHhhhhhhhhhHHHHHHHH
Q 001522 373 VIENSAAELSDECESNELELDLIQTMAIG 401 (1060)
Q Consensus 373 ~ie~~~kel~~e~EsKeKele~~~~~~~~ 401 (1060)
..+..+..|..+.+..+..++.....++.
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777776666655
No 214
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.15 E-value=1.5e+02 Score=34.86 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 418 EALDERWQDLEIKERKFEERVKEFELREKEI 448 (1060)
Q Consensus 418 k~le~r~kELe~KekefE~rvKE~ElkeKq~ 448 (1060)
..|..|+.+++.+-...+.++.+++...+.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 3455566666665555666666555444433
No 215
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=27.78 E-value=1e+03 Score=27.67 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=16.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 001522 77 IESKESDLVLAERRIKECNFELACKEKQLELVR 109 (1060)
Q Consensus 77 ~e~ke~~~~~~~~~~ee~~~el~~Kek~l~~~r 109 (1060)
+.+-+..+..+-.++.+...+.-.-.+++....
T Consensus 17 l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~ 49 (309)
T PF09728_consen 17 LSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQ 49 (309)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555554444444444
No 216
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.94 E-value=1e+03 Score=27.23 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001522 224 YDEIKKSIIQCETKLDCKKKELELTQTSIIELSLELHLEEEKLESLQRIVRLR-ENELDSKEEKLDAMKEEMKKYFNDIE 302 (1060)
Q Consensus 224 ~e~~~ke~e~~~k~l~~k~kEl~~~e~~i~e~~~ele~kEk~~e~~~k~ie~r-~~el~~~~~e~~~~e~~~~~~~ke~e 302 (1060)
+++..+......+.=....+++.+++++--..++.+=.+-..+.+....+++. .+++.....++.+.++.+++.+..++
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444488888899999999998888888899999999988 44577878888888888999998888
Q ss_pred HHHHHHHHHHHHHHH
Q 001522 303 LKEREFNGIRKCIEK 317 (1060)
Q Consensus 303 ~KekEl~~~~k~ie~ 317 (1060)
-...++++.-.....
T Consensus 88 ~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877775544433
No 217
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=25.94 E-value=2.1e+02 Score=35.24 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCccCCCC-chhhhccCCCCCcCCCCCCCCCCCc
Q 001522 940 TSTPTNQPVPSHTNQPQHSGINHSIGFSASRE-QPQLQNNYKRPRIEPLTTRAYMPQI 996 (1060)
Q Consensus 940 ~s~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~kr~~~~~~~~~~~~~~~ 996 (1060)
+|+|.+|.||+ -||++++.=...+..-+.+ +...+-.+--|++..-++++|.|-+
T Consensus 141 ~ss~~sPttpa--fqpp~~~~wd~~a~~~~~p~~a~~~~~~~~~~~p~fs~~~~p~~~ 196 (605)
T KOG4217|consen 141 PSSPPSPTTPA--FQPPHSDLWDATAPGHFNPSQALENDFMPNPRLPLFSGPPSPPHF 196 (605)
T ss_pred CCCCCCCCCCC--CCCCCCccccccCccccCchhhhhcCCCCcccCccccCCCCCCCC
Confidence 44443333433 3666777655442222322 1112222233456666777777655
No 218
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.38 E-value=3.1e+02 Score=26.51 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHhhhhhHHHHHH
Q 001522 174 QIELKEKDLRKIRSSIEECEKELVMK---EKHASSLQSLIEDYAEELESKEKLYDEIKK 229 (1060)
Q Consensus 174 ele~keke~~~~~k~Ie~~~kel~~K---e~~~~~~e~~ie~~~~ELE~Kek~~e~~~k 229 (1060)
||+..|..+...+..++.-...|.+. ...+++++++...+.+-+..-|+++..+++
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444444444444444443332 122334444444444444444444444433
No 219
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=25.32 E-value=1.1e+02 Score=38.26 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhccccc
Q 001522 763 EVLVFLQLLGTFELVAS 779 (1060)
Q Consensus 763 ea~aFLqLLa~FGI~se 779 (1060)
=++.||..|+.|-=+..
T Consensus 278 yli~flA~v~~~~~vNK 294 (577)
T KOG4270|consen 278 YLIRFLADVVEKEHVNK 294 (577)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 34556666555544433
No 220
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.05 E-value=1.6e+02 Score=39.76 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCchhhhccCCCCCcC--CCCCCCCC--CCcccc
Q 001522 970 REQPQLQNNYKRPRIE--PLTTRAYM--PQIPAS 999 (1060)
Q Consensus 970 ~~~~~~~~~~kr~~~~--~~~~~~~~--~~~~~~ 999 (1060)
..||..|+...-|+|- |...-||. |-++|+
T Consensus 139 sk~p~~~~v~~~~~~~~~P~p~Ppy~s~pg~pP~ 172 (1639)
T KOG0905|consen 139 SKQPAAQSVSLLPDMYFVPPPLPPYTSVPGVPPQ 172 (1639)
T ss_pred CCCccccccccCcccCcCCCCCCccccCCCCCCC
Confidence 3355555555555544 44444443 444443
No 221
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.71 E-value=2.1e+02 Score=38.19 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHhhhhHHHHhhhh
Q 001522 637 IVAQHRQTSKLRQSLG 652 (1060)
Q Consensus 637 ~va~~~~ap~L~~~LG 652 (1060)
.+++.++..+||..||
T Consensus 579 t~~~~~~~~elc~~Lg 594 (1049)
T KOG0307|consen 579 TYAQTDEFSELCDMLG 594 (1049)
T ss_pred HhcchhhHHHHHHHHH
Confidence 3344466677777776
No 222
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.61 E-value=9.9e+02 Score=26.51 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001522 118 ELQLKEGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELV 197 (1060)
Q Consensus 118 El~~ke~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~ 197 (1060)
|+=-|-|+..+.+.-+.|.+-++..|..||=.... .+++..-.+..++............+..+|+
T Consensus 4 evCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~--------------ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE 69 (202)
T PF06818_consen 4 EVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRA--------------QLRELRAELRNKESQIQELQDSLRTKQLELE 69 (202)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH------------HHhhhhhhHHH----HHHHHHHHHHHHHHHhh
Q 001522 198 MKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ------------CETKLDCKKKE----LELTQTSIIELSLELHL 261 (1060)
Q Consensus 198 ~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~------------~~k~l~~k~kE----l~~~e~~i~e~~~ele~ 261 (1060)
.=+.++.-...+++-+-+.+-..+.++..++..+.. ....-+..... +......++.+..+|..
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001522 262 EEEKLESLQRIVRLREN 278 (1060)
Q Consensus 262 kEk~~e~~~k~ie~r~~ 278 (1060)
..+..+.....++....
T Consensus 150 er~~~e~q~~~Fe~ER~ 166 (202)
T PF06818_consen 150 ERQRREEQRSSFEQERR 166 (202)
T ss_pred HHHhHHHHHHHHHHHHH
No 223
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=24.16 E-value=2.2e+02 Score=35.82 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=27.4
Q ss_pred CCCCChhhhHhhhhcCCcccCCCCCC-CCCCCCCC-------CCCCccCCCCCCCccCCCCchhh
Q 001522 919 TPAPSATIQLQLASRNNYNIGTSTPT-NQPVPSHT-------NQPQHSGINHSIGFSASREQPQL 975 (1060)
Q Consensus 919 ~~~p~~~~~~~~~s~~~~~~~~s~~~-~~~~~~~~-------~q~~~~~~~~~~~~~~~~~~~~~ 975 (1060)
.++|++.|+++.-+|.++.|.+|+|- ..+++.-| .-.+..+||-.+.++.+.+++.+
T Consensus 573 ~S~~~pvP~~R~laRR~~~is~p~~~~~r~~~~~t~~~~~~~~E~~~~~In~~~ts~sSpp~~~~ 637 (812)
T KOG1451|consen 573 SSFGSPVPNGRPLARRSFGISTPSPITSRSRSPKTPGIGFDVGELGDFQINNNRSSLTSPPGIAP 637 (812)
T ss_pred ccCCCCCCCCCccccccCCccCCCcccCCCCCccCCCccccchhhhcCCCCCcccccCCCCCCCC
Confidence 33444444555556656666544433 22222211 12336677776655555555433
No 224
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=23.87 E-value=1.8e+02 Score=28.46 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCC
Q 001522 763 EVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGF 807 (1060)
Q Consensus 763 ea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL 807 (1060)
+..-|.+|+--||..+....++++.|+..++.+.-|+.+.+.+|-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~ 72 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA 72 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH
Confidence 455688999999999999999999999999999999999998884
No 225
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.67 E-value=3.4e+02 Score=35.19 Aligned_cols=89 Identities=17% Similarity=0.314 Sum_probs=58.1
Q ss_pred hhhhhhhhhHHHhhhhcCCc--hhhHHHhhhccCCCCCCCCCcccchhHhHhHhHHHHHHhhhcCCCCChhhHHHHHHHH
Q 001522 516 QKHDLVFGEISHTLTKACDP--ASLVLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSSVTPEINPQVRDEAMKVA 593 (1060)
Q Consensus 516 k~~~~ir~Ei~~AL~~asDP--AklVLDaiegf~~~~~~~~d~e~~~~~~rrsCilLLEqL~~isp~i~~~VkeeA~kLA 593 (1060)
++.+.+..+|..-|+.+.+| ..+.=|.+++--..+..- --..|+.+-+.|.|.||+-.|.-=.++|---+|-.
T Consensus 521 rNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~dskrRP~T-----ag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~p 595 (1106)
T KOG0162|consen 521 RNRDVLFKDLIELMQTSENPFLKSLFPENVDADSKRRPPT-----AGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSP 595 (1106)
T ss_pred cchhHHHHHHHHHHhccchHHHHHhCchhhcccccCCCCC-----chhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCC
Confidence 35667788888899999998 333333333322111110 12357899999999999988876555665567888
Q ss_pred HHHHHhhhhcccchhhHHH
Q 001522 594 GEWKKKMRVAEDNSLEVLG 612 (1060)
Q Consensus 594 ~~WK~~~~~~~en~levLG 612 (1060)
.||-..++. +.++.||
T Consensus 596 nD~ee~~V~---HQveYLG 611 (1106)
T KOG0162|consen 596 NDWEESRVK---HQVEYLG 611 (1106)
T ss_pred ccHHHHHHH---HHHHhcc
Confidence 899888753 4455555
No 226
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=23.39 E-value=1.1e+03 Score=26.68 Aligned_cols=153 Identities=11% Similarity=0.029 Sum_probs=72.6
Q ss_pred CCCChhHHHHHH-HHHHHHHhhcCCCCCchHHHHHHHHHHhhhccccccC-h----HHHHHHHHhhhcccchHHHHHHhC
Q 001522 733 PIMNPRVKGEAM-KLAVEWKTKMGVGTLNSLEVLVFLQLLGTFELVASFN-R----VEIVELLWTISEHKQAPETCRALG 806 (1060)
Q Consensus 733 p~isp~vke~Ak-klA~~WK~ki~~~~~~slea~aFLqLLa~FGI~seFd-~----deL~~Lv~~ia~rkqapeLc~sLG 806 (1060)
..++|.+.+-.. .++..|-.-- +-.+++--|--.|.|.++.+-+ - ++|..+...+ ...|+|...|.
T Consensus 71 ~kv~~~~~~~~~~~v~~rWs~~~-----dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l---~~~~~l~~~L~ 142 (271)
T PRK13430 71 GKVSPATLEVVSDAVRQRWSRPR-----DLADALEELGVRALLASAEAQGALDDVEDELFRLGRIL---ASNPELRLALS 142 (271)
T ss_pred ccCCHHHHHHHHHHHHhhccCch-----hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HcCHHHHHHHh
Confidence 446666655333 3444576522 2233333344445566665443 2 3333333333 34566666664
Q ss_pred Cchhh-----hHHHHHHHhcCccchHHHHHHHhcccccCCCc-HHHHHHHHHhhhhhhhc-CCCChHHHhHhhHHHHHHh
Q 001522 807 FTDIV-----ANFVRNLIGRKKHIAAIRFICAFKLTDIAKPE-AIFKQYLDDNISDIHRK-GNNSSDAKVKAMDFEVNAL 879 (1060)
Q Consensus 807 L~dkm-----pdiIq~LI~kGkqIeAVrFi~aFgL~dkFpPV-pLLKsYL~daKka~~~k-g~nS~~aq~eA~~KEl~AL 879 (1060)
.+.+ -.++..+....=.-..++|+...-=-.+++.+ .|+..|.+-+.....+. +. ..+-..-.+.+...|
T Consensus 143 -~p~i~~e~K~~ll~~l~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~--VtSA~pLs~~q~~~L 219 (271)
T PRK13430 143 -DRAAPAEAKRELLARLLYGKVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVAT--VTTAVPLSDEQKQRL 219 (271)
T ss_pred -CCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEE--EEecCCCCHHHHHHH
Confidence 2222 25677776643344455666544334445444 66777776655422111 10 011122234566667
Q ss_pred HHHHHHhhhcCCccccc
Q 001522 880 TFLIECFKENKLESSLL 896 (1060)
Q Consensus 880 raVIKCIEehKLEse~p 896 (1060)
...++-+-.++++-.+.
T Consensus 220 ~~~L~k~~g~~V~l~~~ 236 (271)
T PRK13430 220 AAALSRIYGRPVHLNSE 236 (271)
T ss_pred HHHHHHHHCCceEEEee
Confidence 77776655445544433
No 227
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.38 E-value=1.2e+03 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=11.7
Q ss_pred HhHHHHHHhhhHHHHHHhhHHHH
Q 001522 359 KCSEELELKKKHLCVIENSAAEL 381 (1060)
Q Consensus 359 ~~~kELe~kekqle~ie~~~kel 381 (1060)
.-+.+|++-.=+++|....+.+.
T Consensus 156 ~~l~DLesa~vkV~WLR~~L~Ei 178 (269)
T PF05278_consen 156 ATLKDLESAKVKVDWLRSKLEEI 178 (269)
T ss_pred HHHHHHHHcCcchHHHHHHHHHH
Confidence 33445555555555555544443
No 228
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.24 E-value=1.5e+03 Score=28.18 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHH
Q 001522 259 LHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEM----KKYFNDIELKER 306 (1060)
Q Consensus 259 le~kEk~~e~~~k~ie~r~~el~~~~~e~~~~e~~~----~~~~ke~e~Kek 306 (1060)
++..-.-+...++.+...+++-+.+..++++|+... +++..++..|.+
T Consensus 392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 444445566666666666666677777888877644 444555554443
No 229
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=1.4e+02 Score=34.63 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=49.6
Q ss_pred HHHhhhccCCCCCCCCCcccchhHhHhHhHHHHHHhhh------------------cCCCCChhhHHHHHHHHHHHHHhh
Q 001522 539 VLDAMEGFYPPHSREGDMEFDVSIIRRTCILLLEQLSS------------------VTPEINPQVRDEAMKVAGEWKKKM 600 (1060)
Q Consensus 539 VLDaiegf~~~~~~~~d~e~~~~~~rrsCilLLEqL~~------------------isp~i~~~VkeeA~kLA~~WK~~~ 600 (1060)
|||.|.||..|.. |......-|+++-.-.|.-|-. ||+...++|+--|..|..+|-.-|
T Consensus 210 iLdsVr~WLEPLP---D~SlP~~~IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~A~~LV~eWtrpI 286 (397)
T COG5139 210 ILDSVRGWLEPLP---DKSLPNIKIQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRPI 286 (397)
T ss_pred hHHHHHhhhccCC---CCCCcchHHHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHHHHHHHHHhhccc
Confidence 7999999998865 4444566678886666665521 599999999999999999998877
Q ss_pred hhcccc
Q 001522 601 RVAEDN 606 (1060)
Q Consensus 601 ~~~~en 606 (1060)
-.-..|
T Consensus 287 ik~s~n 292 (397)
T COG5139 287 IKPSGN 292 (397)
T ss_pred cCcCCC
Confidence 544443
No 230
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.87 E-value=9.8e+02 Score=25.81 Aligned_cols=62 Identities=29% Similarity=0.351 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001522 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQ 233 (1060)
Q Consensus 164 ~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~ELE~Kek~~e~~~ke~e~ 233 (1060)
++..++.+..+++..+.....+...|+........- .+-..+.++|+..++++..++.+++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666554331111 12223445555555555555555553
No 231
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.72 E-value=1.1e+03 Score=26.20 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Q 001522 208 SLIEDYAEELESKEKLYDEIKKS 230 (1060)
Q Consensus 208 ~~ie~~~~ELE~Kek~~e~~~ke 230 (1060)
..++++...|..-+..|+.++.+
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555445555555433
No 232
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.70 E-value=1.3e+03 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001522 294 MKKYFNDIELKEREFNGIR 312 (1060)
Q Consensus 294 ~~~~~ke~e~KekEl~~~~ 312 (1060)
++.+|.++-.+-+.|++.-
T Consensus 147 iQKYFvDINiQN~KLEsLL 165 (305)
T PF15290_consen 147 IQKYFVDINIQNKKLESLL 165 (305)
T ss_pred HHHHHhhhhhhHhHHHHHH
Confidence 4445556666666665544
No 233
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.69 E-value=2.1e+03 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhHHhHHHHHhhhhhh
Q 001522 91 IKECNFELACKEKQLELVRKRIGEC 115 (1060)
Q Consensus 91 ~ee~~~el~~Kek~l~~~r~~i~Ec 115 (1060)
.-+|..||+-++.+|...|--|+|-
T Consensus 200 ll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 200 LLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777655544
No 234
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.63 E-value=1.9e+03 Score=29.12 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHH
Q 001522 161 QRRLENLIKDFCEQIEL-------KEKDLRKIRSSIEECEKELVMKE 200 (1060)
Q Consensus 161 ~~~~e~~~~~~~~ele~-------keke~~~~~k~Ie~~~kel~~Ke 200 (1060)
-..+...|+++++-++. ..++++...+.-+.+.+-|.+|+
T Consensus 870 ~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~ 916 (1259)
T KOG0163|consen 870 ANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKE 916 (1259)
T ss_pred hhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33455666666666553 45566666666666666655543
No 235
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=22.54 E-value=7.1e+02 Score=32.83 Aligned_cols=86 Identities=9% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHhCCchhhhHHHHHHHhcCccchHHHHHHHhcccccCCCcHHHHHHHHHhhhhhhhcCCCChHHHhHhhHHHHHHhH
Q 001522 801 TCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNISDIHRKGNNSSDAKVKAMDFEVNALT 880 (1060)
Q Consensus 801 Lc~sLGL~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dkFpPVpLLKsYL~daKka~~~kg~nS~~aq~eA~~KEl~ALr 880 (1060)
.|.+-+|.+.++.|++.|-....+|..==+..---.+.++.|...-+.-++......-.-.|+ +..+...--..++.
T Consensus 363 ~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D---~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 363 ILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIND---TDKDVRKAALEAVA 439 (815)
T ss_pred HHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccC---CcHHHHHHHHHHHH
Confidence 344556667777777777777777765422222223333333333333333333322222222 22334444456778
Q ss_pred HHHHHhhhc
Q 001522 881 FLIECFKEN 889 (1060)
Q Consensus 881 aVIKCIEeh 889 (1060)
+|++|+.+-
T Consensus 440 ~v~k~~Ge~ 448 (815)
T KOG1820|consen 440 AVMKVHGEE 448 (815)
T ss_pred HHHHHhhHH
Confidence 888888763
No 236
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.54 E-value=1.2e+03 Score=27.25 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001522 206 LQSLIEDYAE 215 (1060)
Q Consensus 206 ~e~~ie~~~~ 215 (1060)
+.+.++++.+
T Consensus 117 Lkd~lee~eE 126 (302)
T PF09738_consen 117 LKDKLEELEE 126 (302)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 237
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=21.24 E-value=1e+02 Score=35.89 Aligned_cols=13 Identities=23% Similarity=-0.117 Sum_probs=9.7
Q ss_pred CccccCCcccchh
Q 001522 1014 GVALSGGQMQFDH 1026 (1060)
Q Consensus 1014 ~~~~~~~~~~~~~ 1026 (1060)
-.++.+++||||-
T Consensus 179 ~df~a~~~rQf~P 191 (407)
T PF04625_consen 179 PDFFAQLQRQFWP 191 (407)
T ss_pred HHHHHHHHHHhCC
Confidence 3566788899993
No 238
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.12 E-value=5.4e+02 Score=27.22 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 293 EMKKYFNDIELKEREFNGIRKCIEK 317 (1060)
Q Consensus 293 ~~~~~~ke~e~KekEl~~~~k~ie~ 317 (1060)
++-..++++...+...+...+..+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~ 143 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAES 143 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555555554444433
No 239
>PRK06771 hypothetical protein; Provisional
Probab=20.82 E-value=1e+02 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHhCCchh---hhHHHHHHHhcCccchHHHHHHH
Q 001522 799 PETCRALGFTDI---VANFVRNLIGRKKHIAAIRFICA 833 (1060)
Q Consensus 799 peLc~sLGL~dk---mpdiIq~LI~kGkqIeAVrFi~a 833 (1060)
-.++..+|+.+- +++=|..|+..|+.|.||+...+
T Consensus 40 ~~I~~~~Gi~~~~~~~~~e~~~Li~~Gkki~AIK~~Re 77 (93)
T PRK06771 40 QLITKEMGIVDREPPVNKELRQLMEEGQTVTAVKRVRE 77 (93)
T ss_pred HHHHHHcCCCCCcccccHHHHHHHHcCCchHHHHHHHH
Confidence 567888898764 67788999999999999998764
No 240
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.48 E-value=1.8e+03 Score=28.00 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Q 001522 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLI 210 (1060)
Q Consensus 164 ~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~i 210 (1060)
++..+++...+....+.++...+-++.+..+.++.+++++.+-...+
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~ 143 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKL 143 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555455555555555555555555555555555554444444
No 241
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=20.37 E-value=2.6e+02 Score=29.99 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=40.9
Q ss_pred hhhhHhhHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001522 123 EGELNLVKKSVEEWLEKLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKI 185 (1060)
Q Consensus 123 e~~L~~~~~~i~e~~~~~~lK~kel~~~~~~~~~~~~~~~~~e~~~~~~~~ele~keke~~~~ 185 (1060)
..++++++.+.+.. -|-.+|+...+.|.+++.-.+.++..|+++.+.|...+..+..+
T Consensus 104 ~k~~~~l~~L~e~s-----nki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 104 QKQLKLLPTLEEIS-----NKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred hhHHHHHHHHHHHH-----HHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555554444433 27778888888888888777788888888888888877766544
No 242
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=20.29 E-value=1.6e+03 Score=27.28 Aligned_cols=77 Identities=8% Similarity=-0.017 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhhhccccccChHHHHHHHHhhhcccchHHHHHHhCCchhhhHHHHHHHhcCccchHHHHHHHhcccccC
Q 001522 761 SLEVLVFLQLLGTFELVASFNRVEIVELLWTISEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIA 840 (1060)
Q Consensus 761 slea~aFLqLLa~FGI~seFd~deL~~Lv~~ia~rkqapeLc~sLGL~dkmpdiIq~LI~kGkqIeAVrFi~aFgL~dkF 840 (1060)
--.|+..|+-++.|. ....+.+.+..++... ..+.+-++++ .|..|..-.|++++..+ +..+.
T Consensus 216 lr~a~~~Lekl~~~~-~~~It~~~V~~l~~~~--------------~~~~vf~L~~-ai~~~d~~~al~~l~~L-~~~g~ 278 (451)
T PRK06305 216 LRDAESLYDYVVGLF-PKSLDPDSVAKALGLL--------------SQDSLYTLDE-AITTQNYAQALEPVTDA-MNSGV 278 (451)
T ss_pred HHHHHHHHHHHHHhc-cCCcCHHHHHHHHCCC--------------CHHHHHHHHH-HHHcCCHHHHHHHHHHH-HHcCc
Confidence 346677777766662 1234555444443211 2234444442 33444444455444333 23455
Q ss_pred CCcHHHHHHHHHhh
Q 001522 841 KPEAIFKQYLDDNI 854 (1060)
Q Consensus 841 pPVpLLKsYL~daK 854 (1060)
.|+.||...+.--|
T Consensus 279 ~~~~iL~~L~~~fR 292 (451)
T PRK06305 279 APAHFLHDLTLFFR 292 (451)
T ss_pred CHHHHHHHHHHHHH
Confidence 56655444333333
No 243
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.18 E-value=9.6e+02 Score=24.70 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001522 162 RRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYA 214 (1060)
Q Consensus 162 ~~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~ 214 (1060)
+.+.+-...+.++++....-+.++++.+..+=.-|..|.-....+...|.+.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444333333333333333333333
No 244
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.12 E-value=2.5e+03 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001522 163 RLENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEEL 217 (1060)
Q Consensus 163 ~~e~~~~~~~~ele~keke~~~~~k~Ie~~~kel~~Ke~~~~~~e~~ie~~~~EL 217 (1060)
+++..++.+.+.+..+..+++.-+...+....++..-+..+....+.++....++
T Consensus 337 el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 337 RARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444444444444444444444444333333
No 245
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=20.11 E-value=3.3e+02 Score=34.34 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=3.9
Q ss_pred cCCcccch
Q 001522 1018 SGGQMQFD 1025 (1060)
Q Consensus 1018 ~~~~~~~~ 1025 (1060)
.||+.+|.
T Consensus 175 ~gG~~y~~ 182 (655)
T KOG3741|consen 175 LGGTQYFY 182 (655)
T ss_pred CCceEEEe
Confidence 34555554
Done!