Query 001522
Match_columns 1060
No_of_seqs 130 out of 132
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 17:41:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_821-825//hhsearch_pdb/001522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 66.8 11.6 55 492-547 473-531 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 64.8 12.8 19 517-535 600-618 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 34.7 27.9 59 139-197 1907-1965(3245)
4 1c1g_A Tropomyosin; contractIl 1.0 1 1 31.1 41.7 278 164-441 4-281 (284)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 25.2 28.4 63 178-240 2012-2074(3245)
6 3na7_A HP0958; flagellar bioge 1.0 1 1 25.0 22.7 27 409-435 137-163 (256)
7 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 20.8 17.0 27 19-45 87-116 (1080)
8 1lq7_A Alpha3W; three helix bu 1.0 1 1 15.7 4.7 53 298-350 4-60 (67)
9 2wq4_A Lectin; LUNG, pathogen, 1.0 1 1 15.4 -1.5 62 988-1049 51-114 (156)
10 2v71_A Nuclear distribution pr 1.0 1 1 15.3 17.3 126 343-468 5-141 (189)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=66.76 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=25.8
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC-CCCHHHHHHHHHCCC
Q ss_conf 01222110125424578999773211145---664578853113-894356888542259
Q 001522 492 KQLSLQSCTMITGKNLQLLLNQHLQKHDL---VFGEISHTLTKA-CDPASLVLDAMEGFY 547 (1060)
Q Consensus 492 ~~~~~~lc~~mDgkgL~~~i~e~~k~~~~---ir~Ei~~AL~~a-sDPAklVLDaiegf~ 547 (1060)
.+-..+||.+.--..||-|.|.|....+. .+..|....-.. .|.. -++|.|+++.
T Consensus 473 ~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~-~~~~lie~~~ 531 (1184)
T 1i84_S 473 INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQ-PCIELIERPT 531 (1184)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCH-HHHHTTSCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHCCC
T ss_conf 4439999889988999999987654999999996499750136577828-9999983789
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=64.85 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 1145664578853113894
Q 001522 517 KHDLVFGEISHTLTKACDP 535 (1060)
Q Consensus 517 ~~~~ir~Ei~~AL~~asDP 535 (1060)
+.|.+..++...|+.|++|
T Consensus 600 N~d~l~~~~~~ll~~s~~~ 618 (1184)
T 1i84_S 600 NMDPLNDNVTSLLNQSSDK 618 (1184)
T ss_dssp HHCCCCHHHHHHHHTCSCH
T ss_pred CCCCCCHHHHHHHHHCCHH
T ss_conf 2573219999999958539
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=34.68 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64433346778874101324788899999999999999989999999764999999998
Q 001522 139 KLDLKMKEVGLVEKSNDKSLVDQRRLENLIKDFCEQIELKEKDLRKIRSSIEECEKELV 197 (1060)
Q Consensus 139 ~l~lK~kel~~~~~~~~k~~~~~~~~e~~i~~~~~e~e~keke~~~~~k~Ie~~~keL~ 197 (1060)
-+.-|.+++...+.++...+.|..+-...+.++-.++..++.+++...+..+.-..++.
T Consensus 1907 ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999889999999999999999999989999999999999999999
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=31.09 Aligned_cols=278 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999899999997649999999988887666678779998999974456389999989998744335587
Q 001522 164 LENLIKDFCEQIELKEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDCKKK 243 (1060)
Q Consensus 164 ~e~~i~~~~~e~e~keke~~~~~k~Ie~~~keL~~Ke~~~~~~e~~ie~~~~ElE~Kek~~e~~~keie~~~k~~e~k~k 243 (1060)
|...+..+..+|......++.....+..-..++..-+..+......+...-.++..-...+......+......+.....
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998876888999999999999999988988899999999999999999999999999999999999998987798
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88987987999888876679988999999999773321289989999999998887889988987778998999877988
Q 001522 244 ELELTQTSIIELSLELHLEEEKLESLQRIVRLRENELDSKEEKLDAMKEEMKKYFNDIELKEREFNGIRKCIEKRSQELT 323 (1060)
Q Consensus 244 El~~~e~~~~e~~~ele~kEk~~e~~~k~ie~r~~el~~k~~e~~~~e~~~~~~~ke~e~KekEl~~~~k~ie~r~kELe 323 (1060)
++......+.....++..-...+......+..-...+.....+.......+......+......+......+..-..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 84 DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999998898899889889999999999998888899999988877751066799999999999998888998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998899896443345678999976799997588968999886567879985678977875344555668999998867
Q 001522 324 LKEKQLKCVQESLEGCRNEFEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAELSDECESNELELDLIQTMAIGYL 403 (1060)
Q Consensus 324 ~KEkql~~~~~e~~~~~~e~e~k~kEL~s~eK~ie~~~kELesKekqle~ie~~~kel~~e~EsKeKele~~q~~~~~~~ 403 (1060)
.-...+..+...+.............+......+.....++......+......+..+...+..-..+++.....+....
T Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 243 (284)
T 1c1g_A 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 243 (284)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988998888899899989878879999999999999999999975877888999999999999988898998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999888889999999999999999999999988
Q 001522 404 KQLKEKEKQFHSLKEALDERWQDLEIKERKFEERVKEF 441 (1060)
Q Consensus 404 ke~e~kEkefeskEk~le~r~kELe~Kekefe~rvKE~ 441 (1060)
..+......+......+..--..+.--..+++.....+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 244 RSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999988999999999999974
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999997649999999988887666678779998999974456389999989998744335
Q 001522 178 KEKDLRKIRSSIEECEKELVMKEKHASSLQSLIEDYAEELESKEKLYDEIKKSIIQCETKLDC 240 (1060)
Q Consensus 178 keke~~~~~k~Ie~~~keL~~Ke~~~~~~e~~ie~~~~ElE~Kek~~e~~~keie~~~k~~e~ 240 (1060)
|..++...+......+.+|..++..+..+++.+..+-.+.+..-.+-+..+.+++.|..+++.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999999999999
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999888889999999999999999999
Q 001522 409 KEKQFHSLKEALDERWQDLEIKERKFE 435 (1060)
Q Consensus 409 kEkefeskEk~le~r~kELe~Kekefe 435 (1060)
...++..+...++..+.+++.......
T Consensus 137 ~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 137 LEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=15.4
Q ss_pred HHHHHHH---HHHHHHHHCHHHEECCHHCH
Q ss_conf 9999869---99997000122200131205
Q 001522 19 EILRRSY---DLAHAQANSVLNFTVQWKDL 45 (1060)
Q Consensus 19 ~~~~~~~---~~~~~qas~~l~~~lqw~~l 45 (1060)
.+|+.-| |.|..-+.+||+--=-|+.|
T Consensus 87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l 116 (1080)
T 2dfs_A 87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQL 116 (1080)
T ss_dssp HHHHHHHHTTCCCEEEETTEEEEECCSSCC
T ss_pred HHHHHHHHHCCCCHHCCCCEEEEECCCCCC
T ss_conf 999999985577310257426883697544
No 8
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=1.00 E-value=1 Score=15.67 Aligned_cols=53 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 878899889877789989--99877988999988998964433--456789999767
Q 001522 298 FNDIELKEREFNGIRKCI--EKRSQELTLKEKQLKCVQESLEG--CRNEFEEKENEL 350 (1060)
Q Consensus 298 ~ke~e~KekEl~~~~k~i--e~r~kELe~KEkql~~~~~e~~~--~~~e~e~k~kEL 350 (1060)
++-++.|++-|++..+.. +.|+.||+.|=.++.-...+++. ..+.+++.++.|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkl 60 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKL 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 689999999999999981587528999988999999999837875233899999999
No 9
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=1.00 E-value=1 Score=15.37 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 989888--87666556556898766899854468853101102356433557887765666777
Q 001522 988 TTRAYM--PQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRVRANMGAGQTSNVTGN 1049 (1060)
Q Consensus 988 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1060)
++|+++ -+-+++--|..+----.--.-+--+-|.|-|--.|+--++-+...--+||+++.|+
T Consensus 51 sgnnfpg~~fai~t~qg~~a~g~ftysskipe~sgrmpftlva~~~~~s~vs~ik~qw~~irgs 114 (156)
T 2wq4_A 51 TGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSGVTFVKGQWKSVRGS 114 (156)
T ss_dssp ECSSSCEEEEEEEETTEEEEEEEEECSSSSCSSCCCCCEEEEEEEEGGGTCCCEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEECCCEEEECCEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 5787887069998558688605166203177656866568999997047816864244113252
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=15.25 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899997679999758896899988656787998567897-------7875344555668999998867779999998888
Q 001522 343 FEEKENELISVEKLIDKCSEELELKKKHLCVIENSAAEL-------SDECESNELELDLIQTMAIGYLKQLKEKEKQFHS 415 (1060)
Q Consensus 343 ~e~k~kEL~s~eK~ie~~~kELesKekqle~ie~~~kel-------~~e~EsKeKele~~q~~~~~~~ke~e~kEkefes 415 (1060)
|-+...++..++.........+.-.+.+|+.+..+.+++ +...+.+.+++.++...+....-.|..+-....+
T Consensus 5 f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89889999999999999999999999999999998999999999999999988999999999899999999999999988
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8----9999999999999999999999988889999999999788766677888753
Q 001522 416 L----KEALDERWQDLEIKERKFEERVKEFELREKEIESIRKAVEDRSKNLELKEKK 468 (1060)
Q Consensus 416 k----Ek~le~r~kELe~Kekefe~rvKE~ElkeKe~es~ek~~e~~~ke~E~ke~q 468 (1060)
- -..+...+-.|.........++.++|..--.++...+....-...++.+=++
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ 141 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ 141 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999997128889998999659999989889
Done!