Query 001522
Match_columns 1060
No_of_seqs 130 out of 132
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 17:48:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001522.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_821-825//hhsearch_scop/001522hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hoea1 a.4.5.63 (A:10-71) N-a 3.8 99 0.0072 4.6 2.7 30 797-826 14-44 (62)
2 d2f0ca1 b.21.1.3 (A:63-163) Ba 3.3 1.2E+02 0.0084 4.1 0.4 50 986-1052 45-98 (101)
3 d1vdla_ a.5.2.1 (A:) Ubiquitin 3.1 1.3E+02 0.0092 3.9 3.7 40 719-768 22-61 (80)
4 d1z6ra1 a.4.5.63 (A:12-81) Mlc 2.7 1.5E+02 0.011 3.3 4.1 35 789-823 11-48 (70)
5 d2p6va1 a.277.1.1 (A:582-678) 2.6 1.5E+02 0.011 3.2 5.7 54 793-854 26-79 (97)
6 d2ev0a1 a.4.5.24 (A:2-62) Mang 2.4 1.7E+02 0.012 2.9 4.0 41 783-823 6-50 (61)
7 d2fnoa1 a.45.1.1 (A:88-236) Hy 2.3 1.8E+02 0.013 2.7 0.1 26 827-852 80-106 (149)
8 d2d1ha1 a.4.5.50 (A:1-109) Hyp 2.2 1.9E+02 0.014 2.4 4.7 26 797-822 38-64 (109)
9 d1z05a1 a.4.5.63 (A:10-80) Tra 2.1 2E+02 0.014 2.4 2.9 27 797-823 22-49 (71)
10 d1iyjb2 a.171.1.1 (B:2761-2897 2.1 2E+02 0.014 2.4 0.0 16 523-538 72-87 (137)
No 1
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=3.79 E-value=99 Score=4.63 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.7
Q ss_pred CHHHHHHHHCCC-HHHHHHHHHHHHCCCCCH
Q ss_conf 217888870985-014589999872396412
Q 001522 797 QAPETCRALGFT-DIVANFVRNLIGRKKHIA 826 (1060)
Q Consensus 797 qapeLc~sLGL~-dkipdiIe~LI~kGkqIe 826 (1060)
--++|++.+||+ ..+..+|+.|++.|--.+
T Consensus 14 sr~eLa~~~gls~~TVs~~v~~L~~~GlV~e 44 (62)
T d2hoea1 14 SRVELAEELGLTKTTVGEIAKIFLEKGIVVE 44 (62)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999989399999999999998898787
No 2
>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Probab=3.35 E-value=1.2e+02 Score=4.13 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf 7898988887666556556898766899854468853101102356433----557887765666777542
Q 001522 986 PLTTRAYMPQIPASVNLHRSSPTMQHGPGVALSGGQMQFDHIASNHLRV----RANMGAGQTSNVTGNQNL 1052 (1060)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 1052 (1060)
..++.||.|-+.++--||.+.-. --+|+|-|..|. -++-+++ -|-|++.|
T Consensus 45 ~~v~~~~rP~~~qsLvGH~ag~~--------------~SFHIDi~p~GsitWWG~~~~~~---apRG~asY 98 (101)
T d2f0ca1 45 RSVPNEFCPRNRCSLVGHMVGGW--------------NAFHIDIPSSGVCQWFGPTASSG---TPRGTGTY 98 (101)
T ss_dssp CCCCGGGCCSSCEEEEEEETTSS--------------CEEEEEECTTCCCEECSCCBSSC---CEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCC--------------CEEEEEECCCCEEEEECCCCCCC---CCCCCEEE
T ss_conf 21167856643468999973888--------------42689708996489834777899---86552656
No 3
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.12 E-value=1.3e+02 Score=3.86 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 36689898755313999944799999999998842178987627899999
Q 001522 719 KCCILVLEKLKEVLPIMNPRVKGEAMKLAVEWKTKMGVGTLNSLEVLVFL 768 (1060)
Q Consensus 719 ~~cVLLLE~L~~i~p~isp~vke~AkkiA~~WK~ki~~~~~~slea~aFL 768 (1060)
..|-.||.+|..|...-.|.+...|.+. ++++-.+|.+||
T Consensus 22 ~hqQ~lLNQLrEITGIqD~q~L~~ALka----------s~Gdl~~AV~~L 61 (80)
T d1vdla_ 22 KHQQTFLNQLREITGINDAQILQQALKD----------SNGNLELAVAFL 61 (80)
T ss_dssp SCHHHHHHHHHHHSCCCCHHHHHHHHHH----------HTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH----------CCCCHHHHHHHH
T ss_conf 4899999999997377859999999980----------378899999998
No 4
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.72 E-value=1.5e+02 Score=3.32 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHCCCC--HHHHHHHHCCC-HHHHHHHHHHHHCCC
Q ss_conf 885211442--17888870985-014589999872396
Q 001522 789 LWTISEHKQ--APETCRALGFT-DIVANFVRNLIGRKK 823 (1060)
Q Consensus 789 v~~va~rkq--apeLc~sLGL~-dkipdiIe~LI~kGk 823 (1060)
+-.+..+.. .++|++.+||+ .-|..+|+.|+..|-
T Consensus 11 l~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~gl 48 (70)
T d1z6ra1 11 YRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHL 48 (70)
T ss_dssp HHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999949928999999989499999999999998899
No 5
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.65 E-value=1.5e+02 Score=3.21 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=38.4
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11442178888709850145899998723964127788977145556887178999999745
Q 001522 793 SEHKQAPETCRALGFTDIVANFVRNLIGRKKHIAAIRFICAFKLTDIAKPEAIFKQYLDDNI 854 (1060)
Q Consensus 793 a~rkqapeLc~sLGL~dkipdiIe~LI~kGkqIeAVrFi~aFgL~dkFpPVpLLKsYL~daK 854 (1060)
+...++|+... .+-.+|+.||+- -|+|=.|.....-.-+|||=|-|=.||+.+=
T Consensus 26 s~~~~spe~~~------~Vr~LV~~L~~~--~i~~EEF~~~Lq~~lns~pqP~lvPFLK~sL 79 (97)
T d2p6va1 26 SSGKQSTETAA------NVKELVQNLLDG--KIEAEDFTSRLYRELNSSPQPYLVPFLKRSL 79 (97)
T ss_dssp TSSSSCHHHHH------HHHHHHHHHHTT--SSCHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred CCCCCCCHHHH------HHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 48898934889------999999999838--8689999999999865999722399899706
No 6
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=2.42 E-value=1.7e+02 Score=2.86 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCC---CCHHHHHHHHCCCH-HHHHHHHHHHHCCC
Q ss_conf 9999998852114---42178888709850-14589999872396
Q 001522 783 VEIVELLWTISEH---KQAPETCRALGFTD-IVANFVRNLIGRKK 823 (1060)
Q Consensus 783 del~~Lv~~va~r---kqapeLc~sLGL~d-kipdiIe~LI~kGk 823 (1060)
+++++-+...... -...+|++.||+.. -+.+.|+.|...|-
T Consensus 6 EdYLk~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~Gl 50 (61)
T d2ev0a1 6 EDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEY 50 (61)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999983589750999999958995159999999988899
No 7
>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.32 E-value=1.8e+02 Score=2.69 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCCCCCCC-HHHHHHHHH
Q ss_conf 77889771455568871-789999997
Q 001522 827 AIRFICAFKLTDIAKPE-AIFKQYLDD 852 (1060)
Q Consensus 827 AVrFi~aFgL~dkFpPV-pLLKsYL~d 852 (1060)
-|-|+.---|+++|||+ |+|++.--.
T Consensus 80 ivt~~Lw~tMtdr~P~l~~~L~~~AP~ 106 (149)
T d2fnoa1 80 IVTAILWTTVADRFPAIKGIIEDTSPI 106 (149)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCH
T ss_conf 999999999998753304566504843
No 8
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=2.17 E-value=1.9e+02 Score=2.43 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.8
Q ss_pred CHHHHHHHHCCC-HHHHHHHHHHHHCC
Q ss_conf 217888870985-01458999987239
Q 001522 797 QAPETCRALGFT-DIVANFVRNLIGRK 822 (1060)
Q Consensus 797 qapeLc~sLGL~-dkipdiIe~LI~kG 822 (1060)
...+|+..+|+. .-+..+|..|..+|
T Consensus 38 t~~eLa~~~~i~~~tvs~~l~~L~~~G 64 (109)
T d2d1ha1 38 TSEELADIFKLSKTTVENSLKKLIELG 64 (109)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 899999998856769999999999789
No 9
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=2.13 E-value=2e+02 Score=2.36 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=23.7
Q ss_pred CHHHHHHHHCCCH-HHHHHHHHHHHCCC
Q ss_conf 2178888709850-14589999872396
Q 001522 797 QAPETCRALGFTD-IVANFVRNLIGRKK 823 (1060)
Q Consensus 797 qapeLc~sLGL~d-kipdiIe~LI~kGk 823 (1060)
-.++|+..+|++. -+..+|..|++.|-
T Consensus 22 sr~eLa~~~glS~~Tv~~~l~~L~~~Gl 49 (71)
T d1z05a1 22 SRIDLSKESELAPASITKITRELIDAHL 49 (71)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 8999999988788789999999998898
No 10
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.13 E-value=2e+02 Score=2.36 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCHHH
Q ss_conf 4578853113894356
Q 001522 523 GEISHTLTKACDPASL 538 (1060)
Q Consensus 523 ~Ei~~AL~~asDPAkl 538 (1060)
.+|.-||..|+||+-|
T Consensus 72 ael~eale~a~Dp~~l 87 (137)
T d1iyjb2 72 AELYAAVQDASDPEHL 87 (137)
T ss_dssp ----------------
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999999838987999
Done!