Query 001523
Match_columns 1060
No_of_seqs 574 out of 3613
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 99.9 5.5E-25 1.2E-29 258.6 36.2 296 60-356 194-491 (508)
2 KOG4626 O-linked N-acetylgluco 99.9 1.2E-21 2.5E-26 225.3 19.4 246 58-349 245-490 (966)
3 KOG1840 Kinesin light chain [C 99.9 4.5E-20 9.7E-25 217.4 32.3 237 59-296 234-471 (508)
4 KOG4626 O-linked N-acetylgluco 99.9 3.2E-21 6.9E-26 221.7 15.9 248 57-350 210-457 (966)
5 TIGR00990 3a0801s09 mitochondr 99.8 3.1E-17 6.6E-22 200.1 29.2 247 61-348 327-575 (615)
6 KOG1130 Predicted G-alpha GTPa 99.7 1.1E-16 2.4E-21 178.3 20.5 281 62-352 52-352 (639)
7 TIGR00990 3a0801s09 mitochondr 99.7 9.7E-16 2.1E-20 187.1 29.0 245 65-347 160-499 (615)
8 KOG2002 TPR-containing nuclear 99.7 4.1E-16 8.9E-21 188.3 23.7 299 57-385 299-682 (1018)
9 KOG1126 DNA-binding cell divis 99.7 2.5E-16 5.4E-21 185.0 18.6 246 65-348 353-624 (638)
10 KOG1130 Predicted G-alpha GTPa 99.6 6.1E-15 1.3E-19 164.6 18.0 233 57-299 87-339 (639)
11 TIGR02521 type_IV_pilW type IV 99.6 9.3E-14 2E-18 143.1 25.5 173 60-262 26-198 (234)
12 PRK11788 tetratricopeptide rep 99.6 1E-13 2.2E-18 158.2 28.0 248 62-346 66-313 (389)
13 PRK11788 tetratricopeptide rep 99.6 3.7E-13 8.1E-18 153.6 28.7 249 61-345 31-279 (389)
14 PRK15174 Vi polysaccharide exp 99.6 1.7E-13 3.7E-18 168.8 27.0 250 62-349 107-386 (656)
15 TIGR02917 PEP_TPR_lipo putativ 99.6 8.6E-13 1.9E-17 162.5 28.8 175 64-262 21-222 (899)
16 PRK15174 Vi polysaccharide exp 99.5 6.4E-13 1.4E-17 163.8 26.5 250 59-346 70-349 (656)
17 PRK11447 cellulose synthase su 99.5 1.4E-12 3E-17 170.2 30.4 259 61-346 299-634 (1157)
18 PRK11189 lipoprotein NlpI; Pro 99.5 8.7E-13 1.9E-17 147.6 22.9 232 75-346 36-267 (296)
19 TIGR02917 PEP_TPR_lipo putativ 99.5 3.2E-12 6.8E-17 157.6 29.2 236 65-346 499-734 (899)
20 COG3063 PilF Tfp pilus assembl 99.5 1.4E-12 3E-17 138.2 20.7 170 62-261 32-201 (250)
21 KOG1155 Anaphase-promoting com 99.5 2.1E-12 4.6E-17 146.9 23.4 192 70-294 335-526 (559)
22 PRK11447 cellulose synthase su 99.5 1.6E-12 3.4E-17 169.7 24.5 244 67-343 463-739 (1157)
23 PRK09782 bacteriophage N4 rece 99.5 5.7E-12 1.2E-16 160.4 27.0 235 64-348 476-710 (987)
24 PRK12370 invasion protein regu 99.5 1.3E-11 2.7E-16 149.6 27.6 173 58-261 288-469 (553)
25 PRK12370 invasion protein regu 99.5 1.2E-11 2.5E-16 149.9 27.0 241 59-346 252-504 (553)
26 KOG1126 DNA-binding cell divis 99.4 4.9E-13 1.1E-17 157.6 13.8 236 18-297 378-613 (638)
27 KOG1839 Uncharacterized protei 99.4 2.1E-12 4.6E-17 161.4 20.1 244 5-285 908-1151(1236)
28 KOG0547 Translocase of outer m 99.4 3.8E-12 8.2E-17 145.5 19.9 246 64-349 325-571 (606)
29 KOG1155 Anaphase-promoting com 99.4 1.7E-11 3.6E-16 139.7 24.3 243 69-344 266-536 (559)
30 TIGR03302 OM_YfiO outer membra 99.4 1.7E-11 3.8E-16 131.1 22.9 179 62-260 30-230 (235)
31 TIGR02521 type_IV_pilW type IV 99.4 1.9E-11 4.2E-16 125.9 21.7 169 63-261 63-231 (234)
32 PRK09782 bacteriophage N4 rece 99.4 1.2E-11 2.7E-16 157.4 22.0 236 66-349 510-745 (987)
33 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-10 2.7E-15 130.3 26.7 176 62-262 61-265 (296)
34 KOG1941 Acetylcholine receptor 99.4 1.4E-10 3.1E-15 128.8 26.1 275 60-344 78-360 (518)
35 PRK04841 transcriptional regul 99.4 2.5E-10 5.3E-15 145.1 32.3 275 64-348 451-764 (903)
36 KOG1173 Anaphase-promoting com 99.4 2.2E-11 4.8E-16 141.6 19.9 217 58-347 305-521 (611)
37 KOG1129 TPR repeat-containing 99.3 3.2E-11 6.9E-16 132.5 18.5 240 66-349 224-463 (478)
38 KOG2002 TPR-containing nuclear 99.3 8E-11 1.7E-15 143.3 23.4 257 65-351 270-532 (1018)
39 COG3063 PilF Tfp pilus assembl 99.3 1.3E-10 2.8E-15 123.5 21.1 208 104-347 32-239 (250)
40 KOG1125 TPR repeat-containing 99.3 4.8E-11 1E-15 139.3 19.0 218 67-356 287-539 (579)
41 PRK10049 pgaA outer membrane p 99.3 4.6E-10 9.9E-15 141.0 29.3 250 61-346 45-341 (765)
42 KOG2003 TPR repeat-containing 99.3 2.3E-10 5E-15 129.3 23.4 203 104-346 487-691 (840)
43 KOG1941 Acetylcholine receptor 99.3 1.9E-10 4.1E-15 127.8 21.8 300 31-350 20-326 (518)
44 TIGR03302 OM_YfiO outer membra 99.3 5E-10 1.1E-14 119.9 23.4 181 103-343 29-231 (235)
45 PRK10049 pgaA outer membrane p 99.3 1.3E-09 2.9E-14 136.9 30.4 253 65-347 83-391 (765)
46 cd05804 StaR_like StaR_like; a 99.3 8E-10 1.7E-14 124.9 25.5 173 63-260 41-213 (355)
47 KOG2003 TPR repeat-containing 99.3 3.6E-10 7.7E-15 127.8 21.8 235 67-346 421-657 (840)
48 KOG1125 TPR repeat-containing 99.2 1.6E-10 3.5E-15 134.9 18.2 187 57-267 311-532 (579)
49 PF14938 SNAP: Soluble NSF att 99.2 8.2E-10 1.8E-14 122.9 21.9 191 64-262 33-225 (282)
50 PF13429 TPR_15: Tetratricopep 99.2 2.2E-11 4.8E-16 134.3 8.5 235 69-347 12-246 (280)
51 PF14938 SNAP: Soluble NSF att 99.2 5.2E-10 1.1E-14 124.5 19.3 227 105-344 33-266 (282)
52 PRK04841 transcriptional regul 99.2 5.3E-09 1.2E-13 133.0 30.3 195 67-266 411-606 (903)
53 KOG1173 Anaphase-promoting com 99.2 4.4E-10 9.6E-15 130.9 17.4 180 58-262 339-518 (611)
54 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.4E-13 113.1 27.0 243 68-346 38-280 (389)
55 KOG0547 Translocase of outer m 99.2 4.7E-10 1E-14 128.7 15.7 180 61-266 390-570 (606)
56 KOG1174 Anaphase-promoting com 99.1 5.1E-09 1.1E-13 118.3 23.2 246 62-349 229-505 (564)
57 KOG2076 RNA polymerase III tra 99.1 1.7E-08 3.7E-13 122.9 28.2 172 62-261 136-308 (895)
58 KOG1839 Uncharacterized protei 99.1 1.6E-11 3.6E-16 153.6 2.3 369 81-492 640-1014(1236)
59 cd05804 StaR_like StaR_like; a 99.1 6.7E-09 1.5E-13 117.4 22.4 210 64-343 5-214 (355)
60 PF13429 TPR_15: Tetratricopep 99.1 4.2E-10 9.1E-15 124.2 11.9 239 62-346 41-279 (280)
61 KOG1129 TPR repeat-containing 99.1 7.5E-10 1.6E-14 121.9 12.6 173 61-262 286-458 (478)
62 KOG0624 dsRNA-activated protei 99.1 3.7E-08 7.9E-13 109.4 25.4 263 58-349 31-375 (504)
63 TIGR00540 hemY_coli hemY prote 99.1 7.4E-08 1.6E-12 112.7 29.0 248 61-344 80-366 (409)
64 PRK10747 putative protoheme IX 99.1 5.5E-08 1.2E-12 113.5 27.7 247 61-347 80-360 (398)
65 TIGR00540 hemY_coli hemY prote 99.0 1E-07 2.2E-12 111.6 29.4 251 65-349 118-404 (409)
66 COG2956 Predicted N-acetylgluc 99.0 3.7E-08 8E-13 109.0 23.1 252 59-349 63-316 (389)
67 KOG0548 Molecular co-chaperone 99.0 1.8E-08 3.9E-13 117.4 20.1 218 64-347 223-458 (539)
68 PRK15179 Vi polysaccharide bio 99.0 2.5E-08 5.3E-13 123.5 22.7 170 65-263 48-218 (694)
69 PF13424 TPR_12: Tetratricopep 99.0 2.2E-09 4.7E-14 95.9 9.9 77 145-222 1-77 (78)
70 PF13424 TPR_12: Tetratricopep 99.0 2.7E-09 5.9E-14 95.2 10.1 78 187-265 1-78 (78)
71 PRK15359 type III secretion sy 99.0 8.9E-09 1.9E-13 103.7 13.9 110 85-221 13-122 (144)
72 KOG0550 Molecular chaperone (D 98.9 1.3E-08 2.8E-13 115.3 16.0 177 67-263 171-351 (486)
73 PRK15179 Vi polysaccharide bio 98.9 5.3E-08 1.1E-12 120.6 22.1 137 61-221 82-218 (694)
74 PRK10747 putative protoheme IX 98.9 3.3E-07 7.1E-12 107.0 27.0 238 68-347 121-393 (398)
75 PF12569 NARP1: NMDA receptor- 98.9 3.6E-07 7.8E-12 109.8 27.7 158 190-364 193-354 (517)
76 PRK15359 type III secretion sy 98.9 3E-08 6.5E-13 99.9 15.5 122 127-280 13-134 (144)
77 KOG0548 Molecular co-chaperone 98.9 9.5E-08 2.1E-12 111.5 20.7 183 63-262 255-455 (539)
78 KOG0550 Molecular chaperone (D 98.9 2.4E-08 5.1E-13 113.3 15.0 254 62-347 46-353 (486)
79 CHL00033 ycf3 photosystem I as 98.9 2.9E-08 6.2E-13 101.8 14.2 131 146-282 32-162 (168)
80 PF13525 YfiO: Outer membrane 98.9 1.5E-07 3.3E-12 100.0 20.2 175 64-253 4-198 (203)
81 KOG2076 RNA polymerase III tra 98.9 1.6E-06 3.5E-11 106.1 30.9 253 57-334 201-545 (895)
82 CHL00033 ycf3 photosystem I as 98.9 4.4E-08 9.4E-13 100.4 15.1 143 78-232 12-154 (168)
83 PLN03218 maturation of RBCL 1; 98.9 9E-07 2E-11 114.3 30.0 171 64-260 506-676 (1060)
84 PRK10370 formate-dependent nit 98.8 1.6E-07 3.4E-12 99.8 19.2 120 120-263 52-174 (198)
85 PRK10370 formate-dependent nit 98.8 7.2E-08 1.6E-12 102.3 16.4 120 78-221 52-174 (198)
86 PLN03218 maturation of RBCL 1; 98.8 8.9E-07 1.9E-11 114.4 29.4 242 63-344 540-783 (1060)
87 PRK10866 outer membrane biogen 98.8 8.2E-07 1.8E-11 97.3 24.5 180 63-257 30-236 (243)
88 KOG0495 HAT repeat protein [RN 98.8 2.9E-07 6.2E-12 108.9 21.6 201 107-349 651-851 (913)
89 KOG4162 Predicted calmodulin-b 98.8 1.2E-06 2.6E-11 105.7 25.6 250 61-347 474-786 (799)
90 PLN02789 farnesyltranstransfer 98.8 1.8E-06 3.9E-11 98.3 25.9 172 74-282 46-227 (320)
91 PRK14574 hmsH outer membrane p 98.8 1.9E-06 4.1E-11 108.8 28.4 127 70-221 73-199 (822)
92 PRK14574 hmsH outer membrane p 98.8 1.5E-06 3.3E-11 109.6 26.7 174 64-275 33-206 (822)
93 TIGR02552 LcrH_SycD type III s 98.7 2.3E-07 5E-12 90.6 15.3 103 103-221 13-115 (135)
94 KOG0553 TPR repeat-containing 98.7 8.9E-08 1.9E-12 105.6 13.5 124 61-208 77-200 (304)
95 PRK02603 photosystem I assembl 98.7 5.8E-07 1.3E-11 92.7 18.8 114 57-183 27-147 (172)
96 PRK14720 transcript cleavage f 98.7 4.3E-07 9.2E-12 114.0 20.1 223 99-350 23-258 (906)
97 PLN03081 pentatricopeptide (PP 98.7 8.9E-07 1.9E-11 110.4 22.0 196 109-344 362-557 (697)
98 PF09976 TPR_21: Tetratricopep 98.7 1.1E-06 2.4E-11 88.2 18.6 136 64-218 10-145 (145)
99 PRK02603 photosystem I assembl 98.7 7.5E-07 1.6E-11 91.9 17.6 126 145-283 31-163 (172)
100 KOG2376 Signal recognition par 98.7 2.2E-05 4.8E-10 92.9 31.3 161 66-241 80-270 (652)
101 COG5010 TadD Flp pilus assembl 98.7 5.4E-07 1.2E-11 97.9 16.6 167 58-257 60-226 (257)
102 TIGR02552 LcrH_SycD type III s 98.7 3.1E-07 6.8E-12 89.7 13.4 102 145-262 13-114 (135)
103 KOG1156 N-terminal acetyltrans 98.7 1.2E-06 2.6E-11 104.2 20.4 243 66-346 8-250 (700)
104 KOG1174 Anaphase-promoting com 98.7 1.9E-06 4.2E-11 98.0 21.1 215 19-262 258-500 (564)
105 PLN02789 farnesyltranstransfer 98.7 2.6E-06 5.7E-11 97.0 22.5 172 58-261 64-249 (320)
106 TIGR02795 tol_pal_ybgF tol-pal 98.7 4.4E-07 9.5E-12 85.6 13.6 103 150-262 3-105 (119)
107 PLN03081 pentatricopeptide (PP 98.7 1.2E-06 2.6E-11 109.2 21.5 159 67-261 261-419 (697)
108 KOG2376 Signal recognition par 98.6 2.3E-05 5.1E-10 92.7 30.1 283 62-347 107-490 (652)
109 PRK15363 pathogenicity island 98.6 7E-07 1.5E-11 91.3 15.5 102 104-221 32-133 (157)
110 PRK15363 pathogenicity island 98.6 7.1E-07 1.5E-11 91.2 15.5 102 62-179 32-133 (157)
111 PLN03088 SGT1, suppressor of 98.6 4.1E-07 8.9E-12 104.9 14.8 96 67-178 4-99 (356)
112 TIGR02795 tol_pal_ybgF tol-pal 98.6 6.4E-07 1.4E-11 84.5 13.7 104 108-221 3-106 (119)
113 KOG0553 TPR repeat-containing 98.6 2.7E-07 5.8E-12 101.9 12.5 123 104-250 78-200 (304)
114 PRK14720 transcript cleavage f 98.6 2.1E-06 4.6E-11 107.8 21.1 242 59-347 25-309 (906)
115 PF09976 TPR_21: Tetratricopep 98.6 3.1E-06 6.7E-11 85.0 17.9 123 119-260 23-145 (145)
116 COG4783 Putative Zn-dependent 98.6 1.1E-05 2.3E-10 94.1 23.6 171 63-286 304-474 (484)
117 PLN03088 SGT1, suppressor of 98.5 9.2E-07 2E-11 102.0 14.0 96 110-221 5-100 (356)
118 COG5010 TadD Flp pilus assembl 98.5 1.7E-06 3.7E-11 94.1 14.6 132 61-216 96-227 (257)
119 KOG1127 TPR repeat-containing 98.5 4E-06 8.8E-11 103.2 19.3 235 78-350 471-706 (1238)
120 KOG1585 Protein required for f 98.5 5.5E-05 1.2E-09 81.7 25.5 227 100-338 24-250 (308)
121 PLN03077 Protein ECB2; Provisi 98.5 3E-05 6.5E-10 99.1 27.7 166 149-343 554-719 (857)
122 PF13525 YfiO: Outer membrane 98.4 2.2E-05 4.8E-10 83.5 21.3 143 106-263 4-171 (203)
123 KOG0495 HAT repeat protein [RN 98.4 4.1E-05 8.9E-10 91.3 25.1 230 73-349 558-787 (913)
124 PRK10866 outer membrane biogen 98.4 4E-05 8.7E-10 84.1 23.1 174 106-339 31-236 (243)
125 KOG3617 WD40 and TPR repeat-co 98.4 2.7E-05 5.8E-10 94.2 22.7 118 59-177 852-995 (1416)
126 KOG1128 Uncharacterized conser 98.4 2E-06 4.4E-11 103.4 13.3 167 72-269 457-623 (777)
127 KOG0624 dsRNA-activated protei 98.4 3.8E-05 8.2E-10 86.0 21.8 213 102-344 33-252 (504)
128 PLN03077 Protein ECB2; Provisi 98.4 2.1E-05 4.5E-10 100.5 23.1 161 64-260 322-482 (857)
129 cd00189 TPR Tetratricopeptide 98.4 2.6E-06 5.6E-11 73.6 10.2 96 109-220 2-97 (100)
130 KOG1585 Protein required for f 98.4 5.5E-05 1.2E-09 81.7 22.0 189 65-262 31-219 (308)
131 cd00189 TPR Tetratricopeptide 98.4 3.1E-06 6.7E-11 73.1 10.2 96 67-178 2-97 (100)
132 PRK10153 DNA-binding transcrip 98.3 2E-05 4.4E-10 95.2 19.7 142 57-221 331-483 (517)
133 KOG1156 N-terminal acetyltrans 98.3 0.00014 2.9E-09 87.2 25.5 201 32-258 10-210 (700)
134 KOG3060 Uncharacterized conser 98.3 0.00051 1.1E-08 74.9 27.7 171 61-263 47-221 (289)
135 PRK10803 tol-pal system protei 98.3 9.9E-06 2.1E-10 89.9 15.1 105 65-179 142-247 (263)
136 KOG1128 Uncharacterized conser 98.3 7E-06 1.5E-10 98.9 14.5 219 70-349 403-621 (777)
137 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.3E-10 78.4 14.2 102 108-219 2-103 (120)
138 PF12895 Apc3: Anaphase-promot 98.3 5.9E-06 1.3E-10 75.2 10.5 84 77-175 1-84 (84)
139 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00037 8E-09 68.2 23.8 173 65-263 59-232 (291)
140 COG3071 HemY Uncharacterized e 98.3 0.00061 1.3E-08 78.1 28.4 246 62-348 81-361 (400)
141 KOG4162 Predicted calmodulin-b 98.3 0.00022 4.7E-09 86.9 26.0 218 26-265 322-545 (799)
142 KOG3060 Uncharacterized conser 98.2 0.00011 2.3E-09 80.1 20.6 159 78-262 25-183 (289)
143 PF13414 TPR_11: TPR repeat; P 98.2 4.8E-06 1E-10 72.4 8.5 65 106-178 2-67 (69)
144 KOG3785 Uncharacterized conser 98.2 9.2E-05 2E-09 83.2 20.2 60 193-260 153-212 (557)
145 KOG0543 FKBP-type peptidyl-pro 98.2 1.4E-05 3.1E-10 91.5 14.3 107 107-221 208-321 (397)
146 PRK10803 tol-pal system protei 98.2 2.6E-05 5.7E-10 86.6 15.8 104 108-221 143-247 (263)
147 KOG1127 TPR repeat-containing 98.2 0.00012 2.5E-09 90.8 22.4 177 57-263 484-660 (1238)
148 PF12688 TPR_5: Tetratrico pep 98.2 2.1E-05 4.5E-10 77.5 13.1 102 150-261 2-103 (120)
149 PF12895 Apc3: Anaphase-promot 98.2 9.4E-06 2E-10 73.8 9.5 84 161-259 1-84 (84)
150 PF13414 TPR_11: TPR repeat; P 98.2 9.1E-06 2E-10 70.7 8.9 64 65-136 3-67 (69)
151 KOG0543 FKBP-type peptidyl-pro 98.2 2.6E-05 5.6E-10 89.5 14.8 140 65-220 208-355 (397)
152 KOG4340 Uncharacterized conser 98.1 0.00017 3.7E-09 79.7 18.3 216 76-338 21-264 (459)
153 KOG3617 WD40 and TPR repeat-co 98.1 0.00016 3.4E-09 87.8 19.5 144 72-219 807-995 (1416)
154 PF12569 NARP1: NMDA receptor- 98.1 0.0002 4.4E-09 86.5 20.6 145 63-225 192-339 (517)
155 COG4105 ComL DNA uptake lipopr 98.0 0.0011 2.4E-08 72.7 23.8 177 64-255 33-226 (254)
156 KOG4555 TPR repeat-containing 98.0 0.00015 3.2E-09 71.9 15.2 102 65-178 43-144 (175)
157 KOG2300 Uncharacterized conser 98.0 0.0005 1.1E-08 80.2 21.6 195 70-281 328-531 (629)
158 KOG1586 Protein required for f 98.0 0.00041 8.9E-09 74.8 19.3 154 79-261 28-182 (288)
159 PRK10153 DNA-binding transcrip 98.0 0.00011 2.3E-09 89.0 17.0 140 106-273 338-488 (517)
160 KOG3785 Uncharacterized conser 98.0 0.0012 2.5E-08 74.7 22.6 109 59-177 85-213 (557)
161 KOG3616 Selective LIM binding 98.0 0.00079 1.7E-08 80.9 22.3 187 70-261 666-910 (1636)
162 KOG2300 Uncharacterized conser 97.9 0.0024 5.2E-08 74.7 25.0 249 76-340 286-552 (629)
163 COG2909 MalT ATP-dependent tra 97.9 0.0053 1.2E-07 76.5 29.5 229 109-348 417-651 (894)
164 COG4783 Putative Zn-dependent 97.9 0.00014 3E-09 85.1 15.1 135 104-262 303-437 (484)
165 KOG4555 TPR repeat-containing 97.9 0.00031 6.8E-09 69.7 15.2 101 109-221 45-145 (175)
166 COG1729 Uncharacterized protei 97.9 6.3E-05 1.4E-09 82.8 11.4 104 65-178 141-244 (262)
167 PRK11906 transcriptional regul 97.9 0.00097 2.1E-08 78.5 21.5 167 64-258 252-432 (458)
168 PF13432 TPR_16: Tetratricopep 97.9 4.7E-05 1E-09 65.6 8.1 61 153-221 1-61 (65)
169 COG4785 NlpI Lipoprotein NlpI, 97.9 0.00072 1.6E-08 72.3 18.2 206 102-344 60-266 (297)
170 PF13432 TPR_16: Tetratricopep 97.9 6.2E-05 1.3E-09 64.8 8.8 60 69-136 1-60 (65)
171 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0065 1.4E-07 59.4 24.1 230 78-347 36-268 (291)
172 PF08631 SPO22: Meiosis protei 97.9 0.0029 6.3E-08 70.8 23.9 142 75-221 3-151 (278)
173 KOG1586 Protein required for f 97.9 0.0053 1.1E-07 66.5 24.3 189 62-260 30-222 (288)
174 COG3071 HemY Uncharacterized e 97.8 0.024 5.1E-07 65.5 30.0 242 65-347 118-393 (400)
175 PF04733 Coatomer_E: Coatomer 97.8 0.00016 3.4E-09 81.5 12.2 169 67-277 104-275 (290)
176 KOG2047 mRNA splicing factor [ 97.8 0.0038 8.2E-08 75.1 23.7 268 62-347 245-582 (835)
177 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00036 7.7E-09 81.7 14.5 120 112-258 174-293 (395)
178 COG4785 NlpI Lipoprotein NlpI, 97.7 0.00071 1.5E-08 72.3 15.2 175 60-261 60-265 (297)
179 COG1729 Uncharacterized protei 97.7 0.00045 9.8E-09 76.2 13.6 102 110-221 144-245 (262)
180 PRK11906 transcriptional regul 97.7 0.00052 1.1E-08 80.7 14.9 161 109-295 257-429 (458)
181 COG4700 Uncharacterized protei 97.7 0.003 6.5E-08 66.4 18.6 161 72-263 63-223 (251)
182 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00064 1.4E-08 79.6 15.5 119 71-216 175-293 (395)
183 PRK15331 chaperone protein Sic 97.7 0.00026 5.6E-09 73.1 10.6 104 58-177 30-133 (165)
184 KOG1070 rRNA processing protei 97.7 0.0011 2.5E-08 84.7 18.2 214 102-347 1453-1666(1710)
185 PF10345 Cohesin_load: Cohesin 97.6 0.024 5.2E-07 70.3 29.1 198 60-265 54-257 (608)
186 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00019 4.1E-09 84.2 9.8 72 144-220 70-141 (453)
187 PF13512 TPR_18: Tetratricopep 97.6 0.00069 1.5E-08 68.5 12.4 104 65-178 10-128 (142)
188 COG2909 MalT ATP-dependent tra 97.6 0.007 1.5E-07 75.5 23.2 264 66-340 416-684 (894)
189 KOG2047 mRNA splicing factor [ 97.6 0.0091 2E-07 72.0 22.4 184 65-263 387-580 (835)
190 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00031 6.8E-09 82.4 9.9 72 102-178 70-141 (453)
191 COG4235 Cytochrome c biogenesi 97.5 0.0024 5.3E-08 71.4 16.4 119 102-240 151-272 (287)
192 KOG4234 TPR repeat-containing 97.5 0.00086 1.9E-08 70.9 11.9 100 152-262 98-197 (271)
193 KOG2796 Uncharacterized conser 97.5 0.0033 7.1E-08 69.0 16.4 161 62-244 174-334 (366)
194 PRK15331 chaperone protein Sic 97.5 0.00058 1.3E-08 70.6 10.2 102 102-219 32-133 (165)
195 KOG4340 Uncharacterized conser 97.5 0.0018 3.9E-08 71.9 14.2 147 66-232 45-215 (459)
196 PF13512 TPR_18: Tetratricopep 97.5 0.0019 4E-08 65.5 13.0 106 106-221 9-129 (142)
197 KOG4234 TPR repeat-containing 97.4 0.0017 3.6E-08 68.9 12.7 104 64-178 94-197 (271)
198 KOG2471 TPR repeat-containing 97.4 0.0071 1.5E-07 70.9 18.9 130 64-202 239-380 (696)
199 KOG3081 Vesicle coat complex C 97.4 0.028 6.1E-07 62.1 22.2 188 63-286 39-255 (299)
200 KOG4648 Uncharacterized conser 97.4 0.00074 1.6E-08 75.9 10.2 95 68-178 100-194 (536)
201 KOG3616 Selective LIM binding 97.4 0.053 1.1E-06 66.0 25.4 106 150-258 662-790 (1636)
202 COG4235 Cytochrome c biogenesi 97.4 0.0042 9.2E-08 69.5 15.4 106 57-178 148-256 (287)
203 PF10300 DUF3808: Protein of u 97.3 0.008 1.7E-07 72.2 18.8 180 77-279 200-393 (468)
204 KOG1070 rRNA processing protei 97.3 0.028 6E-07 72.7 23.8 174 63-262 1456-1629(1710)
205 COG5159 RPN6 26S proteasome re 97.3 0.027 5.8E-07 62.6 20.2 261 69-343 7-313 (421)
206 PF04733 Coatomer_E: Coatomer 97.3 0.0046 1E-07 69.8 14.9 139 66-233 132-273 (290)
207 KOG1915 Cell cycle control pro 97.3 0.15 3.3E-06 60.1 27.0 247 67-343 75-350 (677)
208 COG3898 Uncharacterized membra 97.3 0.077 1.7E-06 61.3 24.0 232 71-347 126-361 (531)
209 KOG2796 Uncharacterized conser 97.2 0.027 5.8E-07 62.1 19.4 139 107-262 177-315 (366)
210 PF10345 Cohesin_load: Cohesin 97.2 0.094 2E-06 65.2 27.1 272 67-344 303-606 (608)
211 PF04184 ST7: ST7 protein; In 97.2 0.053 1.1E-06 64.5 22.6 136 66-217 169-321 (539)
212 PF12968 DUF3856: Domain of Un 97.2 0.023 4.9E-07 56.0 16.3 121 106-226 6-135 (144)
213 PF13371 TPR_9: Tetratricopept 97.2 0.0017 3.7E-08 56.9 8.2 59 155-221 1-59 (73)
214 PF13374 TPR_10: Tetratricopep 97.1 0.00068 1.5E-08 52.7 4.8 41 233-273 2-42 (42)
215 KOG2610 Uncharacterized conser 97.1 0.0071 1.5E-07 68.2 14.3 165 71-259 109-273 (491)
216 PF13374 TPR_10: Tetratricopep 97.1 0.00078 1.7E-08 52.4 5.0 41 191-231 2-42 (42)
217 PF10300 DUF3808: Protein of u 97.1 0.015 3.2E-07 70.0 18.2 132 80-230 248-386 (468)
218 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4.1E-08 56.6 8.0 68 197-277 1-68 (73)
219 COG4105 ComL DNA uptake lipopr 97.1 0.043 9.3E-07 60.6 19.9 155 149-344 34-196 (254)
220 KOG4642 Chaperone-dependent E3 97.1 0.0026 5.6E-08 69.0 10.0 104 63-182 8-111 (284)
221 KOG1463 26S proteasome regulat 97.1 0.037 8.1E-07 62.8 19.4 262 66-344 49-316 (411)
222 PF14559 TPR_19: Tetratricopep 97.1 0.0014 3.1E-08 56.5 6.8 54 117-178 1-54 (68)
223 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.2E-08 56.5 6.6 54 75-136 1-54 (68)
224 PF12968 DUF3856: Domain of Un 97.1 0.024 5.2E-07 55.8 15.3 120 65-184 9-135 (144)
225 PF02259 FAT: FAT domain; Int 97.1 0.087 1.9E-06 59.6 22.6 252 66-349 30-292 (352)
226 PF09986 DUF2225: Uncharacteri 97.0 0.0067 1.4E-07 65.7 12.7 103 75-178 87-194 (214)
227 KOG1915 Cell cycle control pro 97.0 0.52 1.1E-05 55.9 28.4 190 62-260 204-431 (677)
228 COG4700 Uncharacterized protei 97.0 0.014 3.1E-07 61.4 14.4 134 66-221 90-223 (251)
229 KOG2041 WD40 repeat protein [G 97.0 0.18 3.9E-06 61.5 25.2 192 60-259 687-936 (1189)
230 KOG4648 Uncharacterized conser 96.9 0.0035 7.6E-08 70.7 9.4 96 110-221 100-195 (536)
231 PF09986 DUF2225: Uncharacteri 96.9 0.0094 2E-07 64.6 12.5 102 119-221 89-195 (214)
232 PF13281 DUF4071: Domain of un 96.9 0.13 2.7E-06 60.2 22.3 155 78-252 112-278 (374)
233 PF10602 RPN7: 26S proteasome 96.8 0.027 5.7E-07 59.3 14.1 112 145-263 32-143 (177)
234 PF08631 SPO22: Meiosis protei 96.7 0.48 1E-05 53.2 24.6 110 63-177 33-149 (278)
235 PF10602 RPN7: 26S proteasome 96.7 0.045 9.7E-07 57.6 14.9 111 104-221 33-143 (177)
236 KOG1550 Extracellular protein 96.7 0.033 7.2E-07 68.4 16.0 150 80-262 227-393 (552)
237 PF03704 BTAD: Bacterial trans 96.7 0.044 9.5E-07 54.7 14.2 112 67-186 8-133 (146)
238 COG2976 Uncharacterized protei 96.6 0.074 1.6E-06 56.6 15.9 100 149-262 89-188 (207)
239 COG2976 Uncharacterized protei 96.6 0.1 2.3E-06 55.5 16.9 101 107-221 89-189 (207)
240 KOG3081 Vesicle coat complex C 96.5 0.16 3.6E-06 56.3 18.3 169 67-274 110-278 (299)
241 PF11817 Foie-gras_1: Foie gra 96.5 0.54 1.2E-05 51.9 22.9 186 68-257 13-242 (247)
242 KOG2471 TPR repeat-containing 96.5 0.014 3.1E-07 68.5 10.6 132 105-245 238-381 (696)
243 PF04184 ST7: ST7 protein; In 96.5 0.05 1.1E-06 64.7 15.2 132 112-259 173-321 (539)
244 PF03704 BTAD: Bacterial trans 96.5 0.065 1.4E-06 53.5 14.1 111 152-270 9-133 (146)
245 KOG4642 Chaperone-dependent E3 96.4 0.012 2.6E-07 64.1 8.5 99 110-224 13-111 (284)
246 KOG1464 COP9 signalosome, subu 96.4 0.39 8.4E-06 53.4 20.1 187 78-275 40-230 (440)
247 KOG0551 Hsp90 co-chaperone CNS 96.3 0.065 1.4E-06 60.9 13.9 108 61-180 77-184 (390)
248 PF12862 Apc5: Anaphase-promot 96.2 0.072 1.6E-06 50.1 12.0 82 159-242 8-90 (94)
249 KOG0545 Aryl-hydrocarbon recep 96.1 0.046 1E-06 59.8 11.4 106 65-178 178-293 (329)
250 COG0790 FOG: TPR repeat, SEL1 96.1 0.66 1.4E-05 51.7 21.1 144 66-247 74-236 (292)
251 KOG1464 COP9 signalosome, subu 96.0 0.27 6E-06 54.5 16.5 195 65-266 65-264 (440)
252 KOG1550 Extracellular protein 96.0 0.17 3.6E-06 62.3 16.9 134 64-220 243-393 (552)
253 KOG0545 Aryl-hydrocarbon recep 95.9 0.075 1.6E-06 58.2 11.5 107 107-221 178-294 (329)
254 PF05843 Suf: Suppressor of fo 95.8 0.17 3.8E-06 56.8 14.7 131 69-221 5-137 (280)
255 PF12862 Apc5: Anaphase-promot 95.8 0.13 2.9E-06 48.3 11.5 82 117-200 8-90 (94)
256 PF02259 FAT: FAT domain; Int 95.7 0.43 9.4E-06 54.0 17.8 132 61-204 142-305 (352)
257 PF12739 TRAPPC-Trs85: ER-Golg 95.7 0.84 1.8E-05 54.3 20.7 186 150-353 209-408 (414)
258 COG0790 FOG: TPR repeat, SEL1 95.7 0.31 6.8E-06 54.2 16.1 155 71-262 47-220 (292)
259 COG5159 RPN6 26S proteasome re 95.6 0.28 6E-06 54.9 14.5 153 111-272 7-164 (421)
260 KOG0551 Hsp90 co-chaperone CNS 95.5 0.12 2.5E-06 58.9 11.4 106 104-221 78-183 (390)
261 PF04910 Tcf25: Transcriptiona 95.5 1.1 2.4E-05 52.5 20.0 152 102-263 35-223 (360)
262 PF13176 TPR_7: Tetratricopept 95.4 0.031 6.6E-07 43.2 5.0 31 151-181 1-31 (36)
263 PF08626 TRAPPC9-Trs120: Trans 95.4 0.92 2E-05 60.8 21.8 156 63-222 240-476 (1185)
264 KOG3783 Uncharacterized conser 95.4 1.2 2.7E-05 53.6 20.2 182 65-262 267-520 (546)
265 KOG2041 WD40 repeat protein [G 95.4 11 0.00023 47.1 29.2 140 71-217 740-936 (1189)
266 KOG2053 Mitochondrial inherita 95.3 2.2 4.7E-05 54.2 22.7 111 75-210 19-129 (932)
267 PF13281 DUF4071: Domain of un 95.3 1.5 3.2E-05 51.5 20.2 177 65-262 141-334 (374)
268 PF13176 TPR_7: Tetratricopept 95.3 0.038 8.2E-07 42.7 5.0 31 193-223 1-31 (36)
269 PF00515 TPR_1: Tetratricopept 95.2 0.038 8.2E-07 41.5 4.8 31 107-137 1-31 (34)
270 PF00515 TPR_1: Tetratricopept 95.1 0.043 9.3E-07 41.2 4.8 32 316-347 2-33 (34)
271 KOG2610 Uncharacterized conser 95.1 3 6.6E-05 47.9 20.9 166 154-341 108-273 (491)
272 PF00244 14-3-3: 14-3-3 protei 95.0 1.7 3.6E-05 48.0 18.9 186 67-268 3-204 (236)
273 PF05843 Suf: Suppressor of fo 95.0 0.27 5.9E-06 55.2 12.9 134 109-263 3-137 (280)
274 COG3118 Thioredoxin domain-con 94.9 0.9 2E-05 51.4 16.2 162 65-256 134-295 (304)
275 PF07719 TPR_2: Tetratricopept 94.9 0.057 1.2E-06 40.2 4.8 31 107-137 1-31 (34)
276 PF07719 TPR_2: Tetratricopept 94.8 0.059 1.3E-06 40.1 4.8 32 316-347 2-33 (34)
277 PF06552 TOM20_plant: Plant sp 94.8 0.16 3.5E-06 53.5 9.6 91 82-181 8-105 (186)
278 KOG1538 Uncharacterized conser 94.5 2 4.4E-05 52.6 18.7 165 68-259 588-773 (1081)
279 smart00101 14_3_3 14-3-3 homol 94.5 9.9 0.00022 42.3 24.3 187 68-267 4-205 (244)
280 KOG0985 Vesicle coat protein c 94.5 6.3 0.00014 50.8 23.2 98 71-181 1054-1165(1666)
281 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.32 6.8E-06 44.8 9.3 72 64-140 5-76 (80)
282 PF06552 TOM20_plant: Plant sp 94.3 0.17 3.7E-06 53.3 8.5 93 165-266 7-106 (186)
283 COG3898 Uncharacterized membra 94.3 14 0.00031 43.5 27.7 178 60-262 79-258 (531)
284 KOG2053 Mitochondrial inherita 94.3 19 0.00041 46.2 27.0 166 68-258 46-215 (932)
285 KOG0376 Serine-threonine phosp 94.2 0.055 1.2E-06 64.0 5.2 97 66-178 5-101 (476)
286 PF13428 TPR_14: Tetratricopep 94.1 0.11 2.3E-06 41.9 5.2 42 108-157 2-43 (44)
287 PF12739 TRAPPC-Trs85: ER-Golg 94.1 3 6.5E-05 49.7 19.5 177 67-264 210-401 (414)
288 KOG4322 Anaphase-promoting com 94.0 2.1 4.6E-05 50.4 17.2 189 65-261 273-470 (482)
289 PF13428 TPR_14: Tetratricopep 94.0 0.12 2.6E-06 41.5 5.2 42 66-115 2-43 (44)
290 PF08626 TRAPPC9-Trs120: Trans 93.9 2.2 4.8E-05 57.3 19.7 231 105-345 240-553 (1185)
291 PF13181 TPR_8: Tetratricopept 93.9 0.12 2.7E-06 38.5 4.9 31 316-346 2-32 (34)
292 PF13181 TPR_8: Tetratricopept 93.9 0.12 2.7E-06 38.5 4.8 31 107-137 1-31 (34)
293 KOG4322 Anaphase-promoting com 93.7 1.9 4.1E-05 50.9 16.0 148 72-223 238-385 (482)
294 COG3118 Thioredoxin domain-con 93.4 5.2 0.00011 45.5 18.3 129 109-261 136-264 (304)
295 PF13431 TPR_17: Tetratricopep 93.3 0.072 1.6E-06 40.9 2.7 34 129-170 1-34 (34)
296 KOG1308 Hsp70-interacting prot 93.2 0.085 1.8E-06 60.2 4.2 93 70-178 119-211 (377)
297 KOG1463 26S proteasome regulat 93.2 5.2 0.00011 46.2 18.0 140 79-224 102-242 (411)
298 PF13431 TPR_17: Tetratricopep 93.2 0.082 1.8E-06 40.6 2.8 34 87-128 1-34 (34)
299 KOG4814 Uncharacterized conser 93.2 12 0.00027 46.2 21.9 104 109-222 356-459 (872)
300 PF04910 Tcf25: Transcriptiona 93.1 4.1 8.8E-05 47.8 18.0 153 60-221 35-223 (360)
301 PF08424 NRDE-2: NRDE-2, neces 93.1 8.7 0.00019 44.2 20.4 148 102-262 14-183 (321)
302 KOG0985 Vesicle coat protein c 93.1 13 0.00028 48.1 22.6 175 66-266 1105-1312(1666)
303 KOG2581 26S proteasome regulat 93.0 16 0.00035 43.2 21.9 183 64-257 125-311 (493)
304 KOG0376 Serine-threonine phosp 93.0 0.13 2.9E-06 60.9 5.4 95 111-221 8-102 (476)
305 KOG4014 Uncharacterized conser 92.9 1.5 3.2E-05 46.7 12.2 158 78-267 40-238 (248)
306 KOG4814 Uncharacterized conser 92.8 7 0.00015 48.2 19.3 104 67-180 356-459 (872)
307 KOG0890 Protein kinase of the 92.4 5.5 0.00012 55.4 19.5 191 43-244 1648-1857(2382)
308 PF11817 Foie-gras_1: Foie gra 92.3 1.8 3.8E-05 47.9 13.0 93 80-176 153-245 (247)
309 PF08424 NRDE-2: NRDE-2, neces 92.2 9.3 0.0002 44.0 19.0 128 81-221 47-184 (321)
310 PF09670 Cas_Cas02710: CRISPR- 92.1 5 0.00011 47.3 17.1 139 66-222 132-272 (379)
311 KOG3783 Uncharacterized conser 91.8 25 0.00054 43.0 22.1 130 74-222 240-377 (546)
312 KOG1914 mRNA cleavage and poly 91.1 17 0.00038 44.3 19.8 53 201-261 411-463 (656)
313 KOG1538 Uncharacterized conser 90.9 16 0.00035 45.2 19.4 162 70-259 637-830 (1081)
314 COG5187 RPN7 26S proteasome re 90.6 6.8 0.00015 44.4 14.9 147 68-223 78-224 (412)
315 PF07079 DUF1347: Protein of u 90.4 20 0.00042 43.1 19.0 134 64-216 378-520 (549)
316 KOG2581 26S proteasome regulat 90.4 46 0.00099 39.6 23.4 110 64-179 168-277 (493)
317 PF11207 DUF2989: Protein of u 90.3 3.3 7.2E-05 44.7 12.0 83 161-255 118-200 (203)
318 PF10579 Rapsyn_N: Rapsyn N-te 90.2 2.5 5.4E-05 39.1 9.3 71 192-267 7-77 (80)
319 KOG1308 Hsp70-interacting prot 89.9 0.12 2.6E-06 59.0 0.9 92 114-221 121-212 (377)
320 COG4649 Uncharacterized protei 89.7 8.5 0.00018 40.9 13.9 148 72-261 46-195 (221)
321 PF04781 DUF627: Protein of un 89.4 2.3 5E-05 41.7 9.0 101 71-177 2-106 (111)
322 KOG0687 26S proteasome regulat 89.2 11 0.00023 43.5 15.3 133 82-223 81-213 (393)
323 COG5187 RPN7 26S proteasome re 89.2 27 0.00058 39.9 18.0 135 121-264 89-223 (412)
324 KOG0686 COP9 signalosome, subu 89.1 11 0.00025 44.4 15.7 105 147-259 148-255 (466)
325 KOG2561 Adaptor protein NUB1, 88.9 3.9 8.5E-05 48.3 11.9 119 65-183 163-301 (568)
326 PF04190 DUF410: Protein of un 88.9 44 0.00096 37.4 23.9 142 114-263 17-171 (260)
327 KOG2561 Adaptor protein NUB1, 88.8 9 0.0002 45.5 14.7 117 107-224 163-300 (568)
328 KOG0686 COP9 signalosome, subu 88.7 3.9 8.4E-05 48.1 11.7 105 65-176 150-256 (466)
329 KOG0687 26S proteasome regulat 88.6 12 0.00027 43.0 15.2 131 124-263 81-211 (393)
330 PF15015 NYD-SP12_N: Spermatog 88.4 5.2 0.00011 47.2 12.4 107 149-263 176-292 (569)
331 PF13174 TPR_6: Tetratricopept 88.2 0.71 1.5E-05 33.8 3.7 30 108-137 1-30 (33)
332 PF13174 TPR_6: Tetratricopept 88.1 0.68 1.5E-05 33.9 3.6 32 316-347 1-32 (33)
333 PF09670 Cas_Cas02710: CRISPR- 87.9 17 0.00036 43.0 16.8 140 108-265 132-273 (379)
334 KOG1920 IkappaB kinase complex 87.6 73 0.0016 42.4 22.7 67 194-261 955-1027(1265)
335 PF07145 PAM2: Ataxin-2 C-term 87.5 0.31 6.7E-06 32.6 1.2 13 862-874 5-17 (18)
336 PF10516 SHNi-TPR: SHNi-TPR; 87.5 1.1 2.4E-05 35.7 4.5 36 234-269 2-37 (38)
337 KOG3807 Predicted membrane pro 87.4 17 0.00038 41.9 15.4 70 59-138 178-247 (556)
338 COG4649 Uncharacterized protei 87.3 24 0.00053 37.6 15.3 133 68-219 61-195 (221)
339 KOG1920 IkappaB kinase complex 87.0 32 0.00069 45.5 19.2 67 152-219 955-1027(1265)
340 KOG1258 mRNA processing protei 86.9 76 0.0017 39.4 21.4 176 62-263 294-471 (577)
341 KOG2114 Vacuolar assembly/sort 86.8 8.7 0.00019 48.8 13.8 56 74-137 343-398 (933)
342 smart00028 TPR Tetratricopepti 86.7 0.94 2E-05 31.0 3.5 29 150-178 2-30 (34)
343 smart00028 TPR Tetratricopepti 86.6 0.96 2.1E-05 31.0 3.6 29 108-136 2-30 (34)
344 KOG3024 Uncharacterized conser 86.6 58 0.0013 37.1 18.7 136 75-216 16-152 (312)
345 KOG1497 COP9 signalosome, subu 86.3 43 0.00094 38.7 17.7 152 65-219 61-212 (399)
346 PF15015 NYD-SP12_N: Spermatog 86.2 11 0.00024 44.7 13.4 110 65-182 176-295 (569)
347 KOG2422 Uncharacterized conser 86.2 86 0.0019 38.9 21.1 175 78-263 251-449 (665)
348 KOG2422 Uncharacterized conser 86.2 36 0.00078 42.0 18.0 175 162-346 251-450 (665)
349 PF10516 SHNi-TPR: SHNi-TPR; 85.9 1.6 3.5E-05 34.8 4.7 35 108-142 2-36 (38)
350 KOG4563 Cell cycle-regulated h 85.8 3.2 7E-05 48.1 8.8 69 63-131 39-107 (400)
351 KOG4507 Uncharacterized conser 85.7 3.8 8.2E-05 50.0 9.7 104 104-221 210-313 (886)
352 KOG4507 Uncharacterized conser 84.7 6.5 0.00014 48.1 10.9 100 149-262 212-312 (886)
353 PF09613 HrpB1_HrpK: Bacterial 84.6 10 0.00022 39.6 11.2 92 59-166 4-95 (160)
354 KOG1924 RhoA GTPase effector D 83.8 2.6 5.7E-05 52.5 7.4 20 765-784 548-567 (1102)
355 KOG1258 mRNA processing protei 83.7 76 0.0016 39.4 19.5 128 104-254 294-421 (577)
356 KOG1914 mRNA cleavage and poly 83.2 1.3E+02 0.0028 37.3 21.4 141 109-263 288-431 (656)
357 PF10255 Paf67: RNA polymerase 82.8 6.9 0.00015 46.6 10.2 73 109-182 124-197 (404)
358 KOG2908 26S proteasome regulat 82.5 84 0.0018 36.7 18.0 95 158-255 84-179 (380)
359 smart00101 14_3_3 14-3-3 homol 82.0 35 0.00075 38.1 14.7 97 83-179 91-201 (244)
360 KOG0890 Protein kinase of the 81.5 65 0.0014 45.7 19.4 110 103-222 1666-1786(2382)
361 PRK13184 pknD serine/threonine 81.2 9.1 0.0002 50.1 11.3 109 115-235 483-591 (932)
362 KOG1497 COP9 signalosome, subu 80.8 82 0.0018 36.6 17.0 110 147-259 101-210 (399)
363 PF04781 DUF627: Protein of un 80.8 21 0.00046 35.1 11.1 100 155-267 2-105 (111)
364 PF12309 KBP_C: KIF-1 binding 80.8 66 0.0014 38.1 17.3 162 80-246 139-359 (371)
365 PF00244 14-3-3: 14-3-3 protei 80.7 11 0.00023 41.7 10.3 99 83-181 89-201 (236)
366 PF10952 DUF2753: Protein of u 80.5 18 0.00038 36.5 10.4 73 110-182 4-83 (140)
367 KOG0307 Vesicle coat complex C 80.3 13 0.00028 48.5 11.9 26 313-338 585-611 (1049)
368 PF04053 Coatomer_WDAD: Coatom 80.3 12 0.00027 45.1 11.4 108 72-219 268-375 (443)
369 KOG4521 Nuclear pore complex, 80.1 1.2E+02 0.0026 40.5 19.9 186 149-347 920-1135(1480)
370 KOG2114 Vacuolar assembly/sort 80.1 42 0.00092 43.0 15.8 35 60-94 363-397 (933)
371 KOG4521 Nuclear pore complex, 79.7 70 0.0015 42.5 17.7 132 59-208 914-1071(1480)
372 PF11207 DUF2989: Protein of u 79.5 6.5 0.00014 42.5 7.7 65 142-211 134-198 (203)
373 PRK13184 pknD serine/threonine 79.2 2.3E+02 0.005 37.7 26.7 97 28-137 486-582 (932)
374 COG3014 Uncharacterized protei 78.6 88 0.0019 36.6 16.5 32 65-96 58-89 (449)
375 COG5290 IkappaB kinase complex 78.6 83 0.0018 40.3 17.3 26 194-219 938-963 (1243)
376 PF09613 HrpB1_HrpK: Bacterial 77.9 25 0.00053 36.9 11.2 89 104-208 7-95 (160)
377 PF07079 DUF1347: Protein of u 77.8 1.7E+02 0.0038 35.5 23.2 52 198-258 469-520 (549)
378 COG3629 DnrI DNA-binding trans 77.7 52 0.0011 37.5 14.5 76 190-273 152-227 (280)
379 PRK10941 hypothetical protein; 77.7 19 0.0004 40.8 11.1 79 148-239 180-258 (269)
380 PF14853 Fis1_TPR_C: Fis1 C-te 76.6 12 0.00026 31.9 7.1 41 234-279 2-42 (53)
381 PF10373 EST1_DNA_bind: Est1 D 76.3 26 0.00057 38.4 11.8 62 126-203 1-62 (278)
382 PF10952 DUF2753: Protein of u 76.2 43 0.00094 33.8 11.6 76 194-269 4-86 (140)
383 COG3629 DnrI DNA-binding trans 76.0 57 0.0012 37.2 14.3 76 105-188 151-226 (280)
384 KOG0128 RNA-binding protein SA 75.7 2.2E+02 0.0047 37.0 20.1 152 60-220 108-260 (881)
385 PF04053 Coatomer_WDAD: Coatom 75.7 34 0.00074 41.4 13.3 93 69-209 299-391 (443)
386 PF10255 Paf67: RNA polymerase 75.4 18 0.00039 43.2 10.6 75 192-266 123-197 (404)
387 PRK10941 hypothetical protein; 75.0 19 0.00041 40.7 10.2 83 190-285 180-262 (269)
388 KOG0276 Vesicle coat complex C 73.2 26 0.00055 43.4 11.1 48 160-220 648-695 (794)
389 KOG0508 Ankyrin repeat protein 73.0 26 0.00056 42.2 10.8 135 65-202 245-390 (615)
390 TIGR02561 HrpB1_HrpK type III 72.4 31 0.00066 35.9 10.0 90 60-165 5-94 (153)
391 PF14561 TPR_20: Tetratricopep 72.2 27 0.00058 32.9 9.0 70 187-283 18-87 (90)
392 PF05053 Menin: Menin; InterP 71.6 62 0.0013 40.0 13.8 92 125-221 255-348 (618)
393 PF05053 Menin: Menin; InterP 71.0 53 0.0012 40.6 13.0 95 105-224 275-371 (618)
394 PF14853 Fis1_TPR_C: Fis1 C-te 70.6 26 0.00055 30.0 7.6 29 193-221 3-31 (53)
395 cd09240 BRO1_Alix Protein-inte 70.4 1.2E+02 0.0027 35.3 15.9 33 106-138 118-159 (346)
396 TIGR02710 CRISPR-associated pr 70.1 93 0.002 37.0 14.7 61 68-131 133-195 (380)
397 PF14561 TPR_20: Tetratricopep 70.0 21 0.00046 33.6 7.8 34 145-178 18-51 (90)
398 KOG0508 Ankyrin repeat protein 69.9 6.4 0.00014 47.0 5.1 135 105-244 243-390 (615)
399 PF10373 EST1_DNA_bind: Est1 D 69.9 43 0.00092 36.8 11.5 62 84-161 1-62 (278)
400 KOG3824 Huntingtin interacting 69.8 10 0.00022 43.3 6.4 67 62-136 113-179 (472)
401 KOG1310 WD40 repeat protein [G 69.0 18 0.00039 44.0 8.5 95 66-176 375-472 (758)
402 COG3014 Uncharacterized protei 68.2 2.5E+02 0.0054 33.1 18.4 29 153-181 62-90 (449)
403 PF07721 TPR_4: Tetratricopept 67.9 7.2 0.00016 28.0 3.2 24 192-215 2-25 (26)
404 PF07721 TPR_4: Tetratricopept 67.0 6.4 0.00014 28.3 2.8 25 108-132 2-26 (26)
405 KOG3364 Membrane protein invol 66.2 38 0.00083 34.8 9.0 69 62-136 29-100 (149)
406 KOG2034 Vacuolar sorting prote 65.8 1.3E+02 0.0029 39.0 15.4 59 112-181 363-421 (911)
407 TIGR02710 CRISPR-associated pr 64.6 2.3E+02 0.0049 33.9 16.4 61 195-258 134-196 (380)
408 cd09241 BRO1_ScRim20-like Prot 64.6 2.3E+02 0.0049 33.3 16.5 34 232-265 236-269 (355)
409 PF04097 Nic96: Nup93/Nic96; 64.4 3.9E+02 0.0084 33.9 21.2 19 72-90 265-283 (613)
410 PF14858 DUF4486: Domain of un 64.3 3.5E+02 0.0075 33.7 18.1 72 194-265 154-229 (542)
411 KOG4014 Uncharacterized conser 63.6 46 0.001 35.8 9.4 134 61-224 64-237 (248)
412 PF07163 Pex26: Pex26 protein; 63.6 1.1E+02 0.0025 34.9 12.9 140 109-257 37-182 (309)
413 cd09239 BRO1_HD-PTP_like Prote 63.1 2.4E+02 0.0053 33.3 16.4 33 232-264 251-283 (361)
414 PRK15180 Vi polysaccharide bio 62.8 30 0.00065 41.8 8.7 133 65-221 289-421 (831)
415 PF07271 Cytadhesin_P30: Cytad 62.4 27 0.00059 39.2 7.8 22 772-795 203-224 (279)
416 KOG4563 Cell cycle-regulated h 62.3 19 0.00042 42.1 6.9 66 107-172 41-106 (400)
417 KOG4849 mRNA cleavage factor I 62.3 36 0.00079 39.3 8.9 33 801-833 290-322 (498)
418 PF10858 DUF2659: Protein of u 62.0 92 0.002 33.1 11.0 105 67-177 95-199 (220)
419 cd09034 BRO1_Alix_like Protein 61.6 2.2E+02 0.0047 32.9 15.6 34 232-265 250-283 (345)
420 TIGR02561 HrpB1_HrpK type III 60.5 74 0.0016 33.2 10.0 86 106-207 9-94 (153)
421 COG3947 Response regulator con 59.7 57 0.0012 37.5 9.8 66 71-144 285-350 (361)
422 KOG3364 Membrane protein invol 58.6 78 0.0017 32.6 9.6 67 190-262 31-100 (149)
423 PF04190 DUF410: Protein of un 58.0 3.1E+02 0.0068 30.7 24.9 150 66-220 11-170 (260)
424 KOG0307 Vesicle coat complex C 57.8 93 0.002 41.1 12.4 30 800-829 724-753 (1049)
425 TIGR03504 FimV_Cterm FimV C-te 57.5 21 0.00046 29.4 4.6 25 69-93 3-27 (44)
426 COG3947 Response regulator con 57.1 73 0.0016 36.6 10.0 73 149-229 279-351 (361)
427 KOG3824 Huntingtin interacting 56.6 21 0.00045 41.0 5.8 60 195-262 120-179 (472)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 56.0 93 0.002 31.1 9.8 86 163-260 40-126 (126)
429 PRK14707 hypothetical protein; 55.9 3.5E+02 0.0076 38.9 17.3 194 71-266 1005-1200(2710)
430 PF10858 DUF2659: Protein of u 55.7 2.8E+02 0.0062 29.6 14.2 105 110-220 96-200 (220)
431 cd02682 MIT_AAA_Arch MIT: doma 55.5 51 0.0011 30.3 7.1 36 64-99 5-40 (75)
432 PF07163 Pex26: Pex26 protein; 55.1 1.7E+02 0.0036 33.6 12.4 141 65-215 34-182 (309)
433 KOG0276 Vesicle coat complex C 55.0 71 0.0015 39.8 10.2 48 118-178 648-695 (794)
434 KOG1924 RhoA GTPase effector D 54.0 32 0.00069 43.6 7.2 26 856-884 628-653 (1102)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 53.5 1E+02 0.0022 30.8 9.7 86 121-218 40-126 (126)
436 COG3914 Spy Predicted O-linked 53.4 2.2E+02 0.0047 35.7 13.9 111 100-221 61-172 (620)
437 KOG2034 Vacuolar sorting prote 52.8 2E+02 0.0042 37.6 13.8 58 71-139 364-421 (911)
438 KOG1310 WD40 repeat protein [G 52.5 46 0.00099 40.8 8.0 82 121-218 388-472 (758)
439 cd09243 BRO1_Brox_like Protein 52.3 2.4E+02 0.0052 33.3 13.9 32 232-263 247-278 (353)
440 cd09247 BRO1_Alix_like_2 Prote 52.3 4.5E+02 0.0097 30.8 18.0 36 232-267 252-287 (346)
441 cd02681 MIT_calpain7_1 MIT: do 52.1 90 0.002 28.7 8.2 34 64-97 5-38 (76)
442 KOG2063 Vacuolar assembly/sort 51.6 1.1E+02 0.0024 40.1 11.8 188 67-261 506-712 (877)
443 KOG0546 HSP90 co-chaperone CPR 51.3 23 0.00049 41.4 5.2 104 110-221 225-339 (372)
444 PRK14707 hypothetical protein; 51.2 1.7E+02 0.0036 41.7 13.4 195 71-269 921-1119(2710)
445 cd02683 MIT_1 MIT: domain cont 51.1 87 0.0019 28.8 8.0 37 63-99 4-40 (77)
446 cd09242 BRO1_ScBro1_like Prote 50.6 3.2E+02 0.0068 32.1 14.6 34 105-138 105-147 (348)
447 COG4976 Predicted methyltransf 49.7 22 0.00047 39.5 4.5 55 116-178 4-58 (287)
448 KOG3024 Uncharacterized conser 49.5 2.4E+02 0.0052 32.4 12.5 62 196-258 90-152 (312)
449 KOG2908 26S proteasome regulat 49.2 5.1E+02 0.011 30.6 21.5 98 116-219 84-182 (380)
450 KOG0546 HSP90 co-chaperone CPR 49.2 31 0.00067 40.3 5.8 103 152-262 225-338 (372)
451 TIGR03362 VI_chp_7 type VI sec 48.9 4.8E+02 0.01 30.2 18.7 135 76-224 110-283 (301)
452 COG5290 IkappaB kinase complex 48.7 7.5E+02 0.016 32.4 19.3 21 160-180 875-895 (1243)
453 cd09240 BRO1_Alix Protein-inte 48.6 3.1E+02 0.0066 32.1 14.1 34 315-348 255-288 (346)
454 TIGR03504 FimV_Cterm FimV C-te 48.3 27 0.00058 28.8 3.8 26 194-219 2-27 (44)
455 cd02678 MIT_VPS4 MIT: domain c 48.0 1.1E+02 0.0023 27.8 8.1 36 64-99 5-40 (75)
456 KOG2063 Vacuolar assembly/sort 47.8 1.9E+02 0.0042 38.0 13.0 111 108-222 505-622 (877)
457 KOG0994 Extracellular matrix g 47.6 9E+02 0.02 33.0 20.0 22 200-221 1534-1555(1758)
458 cd02681 MIT_calpain7_1 MIT: do 47.5 1.8E+02 0.004 26.8 9.5 31 236-266 9-39 (76)
459 COG4976 Predicted methyltransf 46.6 21 0.00046 39.5 3.8 56 199-262 3-58 (287)
460 COG1747 Uncharacterized N-term 46.3 6.9E+02 0.015 31.2 21.0 231 84-351 10-241 (711)
461 KOG4279 Serine/threonine prote 46.0 28 0.0006 44.0 5.0 106 148-263 200-317 (1226)
462 KOG2758 Translation initiation 45.7 5.2E+02 0.011 30.4 14.4 74 59-137 123-197 (432)
463 cd02682 MIT_AAA_Arch MIT: doma 45.2 2E+02 0.0043 26.6 9.2 36 233-268 6-41 (75)
464 PF04212 MIT: MIT (microtubule 45.1 92 0.002 27.4 7.1 35 64-98 4-38 (69)
465 COG2178 Predicted RNA-binding 44.9 4.5E+02 0.0098 28.7 15.5 119 152-274 32-162 (204)
466 PRK12798 chemotaxis protein; R 44.9 6.5E+02 0.014 30.5 20.8 171 69-263 116-287 (421)
467 KOG1953 Targeting complex (TRA 44.8 3E+02 0.0065 36.5 13.6 53 64-118 244-296 (1235)
468 KOG2460 Signal recognition par 44.6 4.9E+02 0.011 32.4 14.7 161 102-268 275-457 (593)
469 PF03635 Vps35: Vacuolar prote 44.5 7E+02 0.015 32.6 17.4 116 107-225 592-719 (762)
470 cd09247 BRO1_Alix_like_2 Prote 44.3 4.2E+02 0.0091 31.0 14.3 32 191-222 253-284 (346)
471 PF10938 YfdX: YfdX protein; 43.3 38 0.00083 35.1 5.0 111 67-177 4-145 (155)
472 PRK09169 hypothetical protein; 42.6 5.3E+02 0.011 37.4 16.4 72 195-266 709-780 (2316)
473 PF04212 MIT: MIT (microtubule 41.3 1.7E+02 0.0036 25.8 8.1 33 236-268 8-40 (69)
474 KOG1076 Translation initiation 40.3 9.4E+02 0.02 31.1 18.9 145 65-221 530-683 (843)
475 cd02656 MIT MIT: domain contai 40.2 1.7E+02 0.0038 26.1 8.2 35 65-99 6-40 (75)
476 PHA02537 M terminase endonucle 39.9 94 0.002 34.5 7.6 107 73-181 91-210 (230)
477 smart00745 MIT Microtubule Int 39.8 1.8E+02 0.0039 26.0 8.3 36 64-99 7-42 (77)
478 COG3914 Spy Predicted O-linked 39.8 5E+02 0.011 32.7 14.1 108 142-263 61-172 (620)
479 PF03097 BRO1: BRO1-like domai 39.6 1E+02 0.0023 35.9 8.5 35 232-266 238-272 (377)
480 PF15336 Auts2: Autism suscept 39.4 2.2E+02 0.0048 31.2 9.9 16 797-812 70-85 (212)
481 KOG3807 Predicted membrane pro 39.2 7.1E+02 0.015 29.4 18.6 58 112-179 189-246 (556)
482 KOG0128 RNA-binding protein SA 39.2 1E+03 0.022 31.3 20.0 149 104-261 110-259 (881)
483 PF07710 P53_tetramer: P53 tet 39.1 17 0.00037 29.8 1.3 15 995-1009 6-20 (42)
484 cd02684 MIT_2 MIT: domain cont 39.0 1.8E+02 0.0039 26.6 8.0 36 64-99 5-40 (75)
485 cd02679 MIT_spastin MIT: domai 37.9 1.2E+02 0.0025 28.3 6.7 34 151-184 10-43 (79)
486 PF05470 eIF-3c_N: Eukaryotic 37.4 9.7E+02 0.021 30.4 18.7 68 192-260 457-527 (595)
487 TIGR03362 VI_chp_7 type VI sec 36.9 7.2E+02 0.016 28.8 23.4 187 65-266 49-283 (301)
488 PF12854 PPR_1: PPR repeat 36.4 61 0.0013 24.7 3.9 26 149-174 7-32 (34)
489 cd09239 BRO1_HD-PTP_like Prote 36.3 4.5E+02 0.0097 31.1 12.9 33 64-96 113-154 (361)
490 PHA02537 M terminase endonucle 35.9 1.8E+02 0.0038 32.4 8.9 108 115-224 91-211 (230)
491 cd02683 MIT_1 MIT: domain cont 35.4 3.3E+02 0.0071 25.0 9.2 32 236-267 9-40 (77)
492 cd09246 BRO1_Alix_like_1 Prote 35.3 8E+02 0.017 28.8 19.3 32 232-263 246-277 (353)
493 cd09243 BRO1_Brox_like Protein 35.2 5.9E+02 0.013 30.1 13.6 31 191-221 248-278 (353)
494 COG2178 Predicted RNA-binding 34.7 6.5E+02 0.014 27.6 16.3 104 110-222 32-152 (204)
495 KOG1938 Protein with predicted 34.6 3.3E+02 0.0071 36.0 12.0 177 72-261 183-383 (960)
496 KOG2066 Vacuolar assembly/sort 34.2 1.2E+03 0.026 30.5 17.8 27 67-93 507-533 (846)
497 PF01535 PPR: PPR repeat; Int 34.0 53 0.0012 23.2 3.2 27 151-177 2-28 (31)
498 cd02679 MIT_spastin MIT: domai 33.6 1.8E+02 0.0038 27.1 7.1 36 64-99 7-42 (79)
499 TIGR00756 PPR pentatricopeptid 33.5 72 0.0016 22.9 3.9 27 151-177 2-28 (35)
500 KOG1076 Translation initiation 33.3 1.2E+03 0.026 30.2 20.0 50 214-263 634-683 (843)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.95 E-value=5.5e-25 Score=258.64 Aligned_cols=296 Identities=25% Similarity=0.293 Sum_probs=269.9
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
..+...+++..+|..|..+|+|+.|+..|++|+++..+..|.+++..+..+..+|.+|..+++|.+|+.+|++||.+.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34555667777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 140 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 140 ~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.+|.+|+.++.++.+||.+|...|+|++|..|+++|++|+++..+..++.+...+.+++.++..++++++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 001523 220 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARN 297 (1060)
Q Consensus 220 i~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La--~l~~k~~e~AeAl~~ 297 (1060)
+.....|.+++.++..+.+||.+|..+|+|.+|.++|++|+++.++..+..+..+...+..|+ +.+.+.+..+..++.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888888887776 444445555555555
Q ss_pred cCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 001523 298 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTS 356 (1060)
Q Consensus 298 ~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~~n~~~ 356 (1060)
....+- .....+++.+...|.+|+.+|..+|+|++|+++..+++..+....+..+...
T Consensus 434 ~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
T KOG1840|consen 434 EAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTV 491 (508)
T ss_pred HHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 555555 6678889999999999999999999999999999999999988776665544
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-21 Score=225.34 Aligned_cols=246 Identities=18% Similarity=0.132 Sum_probs=207.6
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+.-+..-..+++.+|.+|...+.|++|+.+|.+|+.+ .|..+.++.+||.+|+.+|..+-|+..|++||++
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 3444555667888999999999999999999999865 4777888999999999999999999999999886
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
.|....+|+|||.++...|+..+|..+|.+||.++ +..+.+++|||.+|.++|++++|..+|+++
T Consensus 316 -------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 316 -------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred -------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46678899999999999999999999999999863 445788999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 297 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~ 297 (1060)
+++. +..+.+..+||.+|.++|++++|+.+|++++.| .|..+.++.+++..+...++...|+..
T Consensus 381 l~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 381 LEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred HhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9876 667888999999999999999999999999987 366677888888777777777777765
Q ss_pred cCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 298 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 298 ~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
...++. .++..++++.+||.+|...|+..+|+.-|+++|++....-
T Consensus 445 y~rAI~------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 445 YTRAIQ------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHh------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 444332 4577889999999999999999999999999999887543
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.87 E-value=4.5e-20 Score=217.41 Aligned_cols=237 Identities=24% Similarity=0.272 Sum_probs=222.2
Q ss_pred cCCcHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLE-SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 59 ~~~s~dAraLle-lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+........+.. +|..|..+++|.+|+.+|++|+.+.+..+|.+++..+.++.+||.+|...|+|.+|..++++|++|+
T Consensus 234 G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 234 GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 444555555555 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
++..+..++.+...+.+++.++..++++++|+.+|+++++++....+.+++.++.++.+||.+|+.+|+|++|.++|++|
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 296 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~ 296 (1060)
+.+.++..+..+......+.+||..|.+++++.+|.+.|.++..|. ..+|++|+.+...+.+|+.++..++....+..
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999998899999999999999999999999999999999999 88999999999999999988887776665543
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=3.2e-21 Score=221.74 Aligned_cols=248 Identities=18% Similarity=0.148 Sum_probs=215.0
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.+.....-|-++-.+|-.+..+|+...|+..|++|+.+ +|....+|.+||.+|...+.|++|+.+|++|+.+
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34444455667777899999999999999999999966 6888999999999999999999999999999987
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 137 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 137 ~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
.|..+.++.|||.+|+.+|..+-|+..|++|+++ .|....+|+|||.++...|+..+|.++|.+
T Consensus 282 --------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 282 --------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred --------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 3667889999999999999999999999999985 566778999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001523 217 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 296 (1060)
Q Consensus 217 ALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~ 296 (1060)
||.++ +..+++.++||.+|..+|.+++|..+|+++++++ +....+..+|+.++++++...+|+.
T Consensus 346 aL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 346 ALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHH
Confidence 99987 4457889999999999999999999999999874 5556677888888888888888776
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcC
Q 001523 297 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 350 (1060)
Q Consensus 297 ~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~ 350 (1060)
.....+. -.+..++.|.++|..|..+|+...|+..|.+|+.+......
T Consensus 410 ~Ykealr------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 410 CYKEALR------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred HHHHHHh------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 5443333 34678899999999999999999999999999999887654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=3.1e-17 Score=200.14 Aligned_cols=247 Identities=14% Similarity=0.065 Sum_probs=192.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....+..++.+|.+++.+|++++|+.+|++++++ .|....++..+|.++..+|++++|+.+|++++++.
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 395 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--- 395 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 3566778889999999999999999999999976 46677899999999999999999999999998862
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
+....+++.+|.+|+.+|++++|+.+|++++.+ .+.....+.+||.++..+|++++|+.+|++++..
T Consensus 396 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 396 -----SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344678999999999999999999999999985 3445677899999999999999999999999986
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE--SKAFEQQEAARNG 298 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~--~k~~e~AeAl~~~ 298 (1060)
. +....++..+|.++..+|++++|+..|++++++.... ...+............+. .+.++.+..+...
T Consensus 463 ~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 463 F--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred C--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 3345678889999999999999999999999874321 111122221222111222 2333333333322
Q ss_pred CCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Q 001523 299 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 348 (1060)
Q Consensus 299 ~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki 348 (1060)
.... .+....++..+|.++..+|++++|+.+|++++++.++.
T Consensus 534 Al~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 534 ALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 2211 12334578889999999999999999999999997764
No 6
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-16 Score=178.26 Aligned_cols=281 Identities=15% Similarity=0.085 Sum_probs=219.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
......|-++|..|+..++|++|++|...-|-+.+.+ .+....+.+..+||.++..+|.|++|+.++.+-|.+.+++.
T Consensus 52 ~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg 129 (639)
T KOG1130|consen 52 STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG 129 (639)
T ss_pred HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh
Confidence 3445667789999999999999999988877766554 45566788899999999999999999999999999998863
Q ss_pred CCCChhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 201 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGd--------------------yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy 201 (1060)
|......+++|||.+|...|+ ++.|.++|+.-|++.+.+. +......++-+||..|
T Consensus 130 --Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTy 205 (639)
T KOG1130|consen 130 --DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTY 205 (639)
T ss_pred --HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCcee
Confidence 334567899999999998775 4667778888787776654 4455678899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001523 202 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 281 (1060)
Q Consensus 202 ~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~L 281 (1060)
+.+|+|+.|+.+.+.-|.|.++. .+....-+++.+||.++.-+|+++.|+++|+.++.+..++ |..... +.....|
T Consensus 206 YlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vE-AQscYSL 281 (639)
T KOG1130|consen 206 YLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVE-AQSCYSL 281 (639)
T ss_pred eeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHH-HHHHHHh
Confidence 99999999999999999999776 3445556789999999999999999999999999998776 333232 2333334
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcCCC
Q 001523 282 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 352 (1060)
Q Consensus 282 a~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~~ 352 (1060)
+..+.-..+.+.|+....+.+.+.....+......+++.||.+|...|..++|+.+.++.+++........
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 43333334444455444444444555555566778899999999999999999999999999988766444
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=9.7e-16 Score=187.05 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL---------- 134 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKAL---------- 134 (1060)
...++.+|.+|+.+|++++|+..|.+++++ .|....+++.+|.+|..+|+|++|+..|..++
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 446788899999999999999999999876 46667889999999999999998876554332
Q ss_pred --------------------------------------------------------------------------------
Q 001523 135 -------------------------------------------------------------------------------- 134 (1060)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (1060)
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred ---HHHHHhcC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHH
Q 001523 135 ---DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 209 (1060)
Q Consensus 135 ---eL~ek~~g--~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydE 209 (1060)
..+++... ...+....+++.+|.+|..+|++++|+.+|++++.+ .+....+++.+|.++..+|++++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 11111111 113455667888899999999999999999999874 35556788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 001523 210 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 289 (1060)
Q Consensus 210 Aie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~ 289 (1060)
|+.+|++++++. + ....+++.+|.++..+|++++|+.+|++++++ .+++... ...++.+....+
T Consensus 384 A~~~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~---~~~la~~~~~~g 447 (615)
T TIGR00990 384 AEEDFDKALKLN-----S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFS---HIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHH---HHHHHHHHHHCC
Confidence 999999998763 2 33567888999999999999999999999886 3444433 333444444433
Q ss_pred HHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 290 EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 290 e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
+..+++......+ ...+....++..+|.++..+|++++|+.+|++++++...
T Consensus 448 ~~~eA~~~~~~al------~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 448 SIASSMATFRRCK------KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred CHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 3333333221111 123445678899999999999999999999999998765
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.1e-16 Score=188.33 Aligned_cols=299 Identities=17% Similarity=0.083 Sum_probs=214.1
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH-----
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ----- 131 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yq----- 131 (1060)
........++.+|++|+.|+.+|+|++|..||.++++... + ...-.++.||.+|.+.|+++.|..+|+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----D--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----C--CccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 3456667788999999999999999999999999986511 1 122334444444444444444444444
Q ss_pred ------------------------------------------------------------------HHHHHHHHhcCCCC
Q 001523 132 ------------------------------------------------------------------KALDINERELGLDH 145 (1060)
Q Consensus 132 ------------------------------------------------------------------KALeL~ek~~g~d~ 145 (1060)
.|+.++......
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-- 449 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-- 449 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC--
Confidence 444333332221
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH--PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~--p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
--...++|+|.+++.+|++++|..+|.+|+..+......+. .......+|||+++..+++++.|.+.|..++..
T Consensus 450 -ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--- 525 (1018)
T KOG2002|consen 450 -IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--- 525 (1018)
T ss_pred -CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---
Confidence 12466899999999999999999999999998654332222 223567899999999999999999999998874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 303 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d 303 (1060)
||.+..+|..||.+....+...+|..+++.++.+ ...++..+..++.+..-..+.....+.+......+.
T Consensus 526 -----hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 526 -----HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred -----CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 5889999999998888999999999999999987 567788777777565443333322222211111111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcchhhhhhcCcc
Q 001523 304 ASIASKGHLSVSDLLDYINPSH------------DTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDE 371 (1060)
Q Consensus 304 ~~~a~~~~~svselL~~Lg~~y------------~~qGqyeEAl~~YeqALkL~~ki~~~~n~~~~~ia~ke~~~e~~d~ 371 (1060)
.. .-.-.+..||.+| ..++.+++|+..|.++|+...+..++.++.++++++++...+++|+
T Consensus 596 ~~-------~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 596 TK-------TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred cC-------CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHH
Confidence 11 0111222334433 3567788999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccc
Q 001523 372 ETHAPEPESDTDVN 385 (1060)
Q Consensus 372 ~aqv~E~~~~~~~~ 385 (1060)
|+||+|++.+....
T Consensus 669 FsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 669 FSQVREATSDFEDV 682 (1018)
T ss_pred HHHHHHHHhhCCce
Confidence 99999999955433
No 9
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.5e-16 Score=185.03 Aligned_cols=246 Identities=12% Similarity=0.051 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHHhcCCCChhHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVVLY 118 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel--------------------------~ekilg~d~p~~A~A~~~LA~ly~ 118 (1060)
...+.++|+.|+.+++|++|+++|+.+-++ +.+.+-..++.....|..+|+||-
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 378889999999999999999999987664 111122345667789999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 198 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA 198 (1060)
.+++++.|+++|++|+++ ++..+.+|..+|.=+....+||+|..+|++||.+ ++....+|+.||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 999999999999999997 3567889999999999999999999999999985 456678999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 001523 199 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 278 (1060)
Q Consensus 199 ~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al 278 (1060)
.+|.++++++.|+-+|++|+++. |........+|.++.++|+.++|+.+|++|+.+ ++.++....-.
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~l~~~~~ 563 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNPLCKYHR 563 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCchhHHHH
Confidence 99999999999999999999975 555566777999999999999999999999976 45554433333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Q 001523 279 AWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 348 (1060)
Q Consensus 279 ~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki 348 (1060)
..+.+. .++..+++... +......+..+.++..+|.+|.+.|+.+.|+..|--|+.+..+-
T Consensus 564 ~~il~~---~~~~~eal~~L------EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFS---LGRYVEALQEL------EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHh---hcchHHHHHHH------HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 333222 22222232211 11112234566789999999999999999999999999988873
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.63 E-value=6.1e-15 Score=164.57 Aligned_cols=233 Identities=18% Similarity=0.147 Sum_probs=188.9
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--------------
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-------------- 122 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGd-------------- 122 (1060)
.+++...+|...-.+|..+...|.|++|+.++.+-|.+.+.+ .+.....+++|+||.+|...|+
T Consensus 87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~ 164 (639)
T KOG1130|consen 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFN 164 (639)
T ss_pred HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhccccc
Confidence 345566667777788999999999999999999999998876 4556778999999999998765
Q ss_pred ------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 001523 123 ------FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 196 (1060)
Q Consensus 123 ------yeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~n 196 (1060)
++.|.++|+.-|++.++. .|......+|.+||..|+-+|+|+.|+.+.+.-|.|.++.. +....-.++.|
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sN 240 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSN 240 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcc
Confidence 466777777777776654 34445778999999999999999999999999999988865 44455678999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001523 197 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 276 (1060)
Q Consensus 197 LA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~ 276 (1060)
||.++..+|+|+.|+++|+.++.++.++ .+....+...+.||..|..+.++++|+.|+++-|.|.+++ .+......
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~R 316 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELR 316 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHH
Confidence 9999999999999999999999999887 4455667888899999999999999999999999999877 33344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 001523 277 AAAWLEYFESKAFEQQEAARNGT 299 (1060)
Q Consensus 277 al~~La~l~~k~~e~AeAl~~~~ 299 (1060)
+.+.|+......++..+|++...
T Consensus 317 acwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 66666666666666666655433
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=9.3e-14 Score=143.14 Aligned_cols=173 Identities=21% Similarity=0.214 Sum_probs=146.6
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
.....+..++.+|..++..|++++|+.+++++++. .+....++..+|.+|..+|++++|+.+|++++++.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 34456788999999999999999999999999865 35567899999999999999999999999999863
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 140 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 140 ~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
+....++.++|.+|..+|++++|+.+|++++... ..+.....+.++|.++...|++++|+.+|.+++.
T Consensus 96 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 ------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2335678999999999999999999999998742 2233456788899999999999999999999998
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 220 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 220 i~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.. ++ ....+..+|.++..+|++++|..++++++++
T Consensus 164 ~~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 164 ID-----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred hC-----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 22 2456778999999999999999999988765
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=1e-13 Score=158.19 Aligned_cols=248 Identities=13% Similarity=0.036 Sum_probs=179.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
......++.+|.++..+|++++|+.++++++... .........++..||.+|...|++++|+.+|.++++.
T Consensus 66 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----- 136 (389)
T PRK11788 66 PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----- 136 (389)
T ss_pred cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----
Confidence 3456678889999999999999999999887531 0111234568899999999999999999999999864
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.+....++..++.+|...|++++|++++++++..... .........+..+|.++..+|++++|+.+|+++++..
T Consensus 137 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 137 ---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred ---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 2345678899999999999999999999998774211 1112245567789999999999999999999998864
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 301 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~ 301 (1060)
+....++..+|.+|...|++++|+.+|+++++. ++.+. ......++..+...++..++.......
T Consensus 211 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 211 --------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred --------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233567788999999999999999999999875 22221 122233333333333333333221111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 302 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 302 ~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
.. ..+.. ..+..++.++..+|++++|+.+|+++++..+
T Consensus 276 ~~------~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 276 LE------EYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HH------hCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 11 01122 2347889999999999999999999998754
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=3.7e-13 Score=153.59 Aligned_cols=249 Identities=12% Similarity=0.030 Sum_probs=185.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
........|.+|..+...|++++|+.+|+++++. .+....++..+|.+|...|++++|+.++++++...
T Consensus 31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 99 (389)
T PRK11788 31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--- 99 (389)
T ss_pred hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence 3445667778899999999999999999999975 35667899999999999999999999999887631
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.........++..+|.+|...|++++|+.+|+++++. .+....++..++.++..+|++++|+++++++++.
T Consensus 100 -~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 100 -DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred -CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 1111234567899999999999999999999999873 3445678889999999999999999999998875
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~ 300 (1060)
... .........+..+|.++..+|++++|+.+|++++++ .++... ....++.++...++..+|+.....
T Consensus 171 ~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 171 GGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVR---ASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred cCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 311 112234456778999999999999999999999876 233332 333344333333333333322111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Q 001523 301 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 345 (1060)
Q Consensus 301 ~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~ 345 (1060)
... ........++..++.+|..+|++++|+.++++++++.
T Consensus 240 ~~~-----~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 240 VEE-----QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHH-----HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 111 0111234677889999999999999999999998874
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=1.7e-13 Score=168.80 Aligned_cols=250 Identities=13% Similarity=-0.005 Sum_probs=175.2
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---- 137 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~---- 137 (1060)
+.+...++.+|.++...|++++|+..|++++++ .|....++..+|.++..+|++++|+..+++++...
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~ 178 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG 178 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH
Confidence 334556788899999999999999999999876 35556678888888888888888888887665431
Q ss_pred ----------------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 001523 138 ----------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 195 (1060)
Q Consensus 138 ----------------------ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~ 195 (1060)
++....+.......+..++.++..+|++++|+..|++++.+ ++....+++
T Consensus 179 ~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~ 250 (656)
T PRK15174 179 DMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRR 250 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHH
Confidence 00000000011122344566777778888888877777763 344467788
Q ss_pred HHHHHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCC
Q 001523 196 NVAMMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 271 (1060)
Q Consensus 196 nLA~iy~~lGdydE----Aie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh 271 (1060)
+||.+|..+|++++ |+.+|++++++. |....++..+|.++..+|++++|+.+|++++++ .+++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~ 317 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDL 317 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence 99999999999986 799999998865 345678889999999999999999999999986 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 272 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 272 ~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
+... .+++.++...++..+++........ ..+.....+..+|.++...|++++|+.+|++++++.+...
T Consensus 318 ~~a~---~~La~~l~~~G~~~eA~~~l~~al~------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 318 PYVR---AMYARALRQVGQYTAASDEFVQLAR------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHH---HHHHHHHHHCCCHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5443 3344444444444444433211111 1223334566678899999999999999999999988764
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.56 E-value=8.6e-13 Score=162.54 Aligned_cols=175 Identities=21% Similarity=0.211 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------ 137 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~------ 137 (1060)
....++..|..++.+|++++|+..|.++++. .|....+++.+|.+|..+|++++|+.+++++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 6677888899999999999999999999865 35667788999999999999999999998887531
Q ss_pred ---------------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 001523 138 ---------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 196 (1060)
Q Consensus 138 ---------------------ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~n 196 (1060)
.+......+....++..+|.+|...|++++|+.+|++++.. .+....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 11111234456677888999999999999999999988874 2333567788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 197 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 197 LA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+|.++...|++++|++++++++... +....++..+|.++..+|++++|...|++++..
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8888888899999988888887753 223456677888888888888888888888765
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=6.4e-13 Score=163.78 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=176.2
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
.........++.+|..++..|++++|+..|++++++ .|....++..+|.++..+|++++|+..|++++.+.
T Consensus 70 ~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~- 140 (656)
T PRK15174 70 LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF- 140 (656)
T ss_pred HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 334444667888899999999999999999999976 46667899999999999999999999999999872
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhCCCCChhHHH
Q 001523 139 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAA 192 (1060)
Q Consensus 139 k~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~--------------------------ee~~g~d~p~~a~ 192 (1060)
|....++..+|.+|..+|++++|+..+++++... .............
T Consensus 141 -------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 141 -------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 4456678888999999999999988887665431 0000000001111
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhH----HHHHHHHHHHHHHHHcC
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeE----Aie~lqkALeI~rkllg 268 (1060)
....++.++..+|++++|+..|++++... +....++.+||.+|..+|++++ |+.+|++++++ .
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~ 280 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----N 280 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----C
Confidence 22345667777788888888888777643 3345677889999999999986 78888888876 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 269 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 269 ~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
+++.... ..++.+....++..+++....... ...+....++..+|.+|..+|++++|+..|++++....
T Consensus 281 P~~~~a~---~~lg~~l~~~g~~~eA~~~l~~al------~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 281 SDNVRIV---TLYADALIRTGQNEKAIPLLQQSL------ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 5555443 333443444444444433221111 11344556788899999999999999999999987644
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.54 E-value=1.4e-12 Score=170.24 Aligned_cols=259 Identities=15% Similarity=0.018 Sum_probs=173.7
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-----------HHHHHHHHHHHHHHcCCHHHHHHH
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-----------TAGAYSLLAVVLYHTGDFNQATIY 129 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~-----------~A~A~~~LA~ly~~lGdyeeAle~ 129 (1060)
...+...++.+|.+++.+|++++|+.+|++++++. ++... ....+..+|.++...|++++|+.+
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33456788899999999999999999999999763 22211 112334568899999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------hCCCCCh-----------
Q 001523 130 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----------TCGPSHP----------- 188 (1060)
Q Consensus 130 yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee----------~~g~d~p----------- 188 (1060)
|++++++. |....++..||.+|..+|++++|+++|++++++... .+.....
T Consensus 374 ~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 374 YQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 99999872 344678899999999999999999999999975210 0000000
Q ss_pred -------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHH
Q 001523 189 -------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 255 (1060)
Q Consensus 189 -------------~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~ 255 (1060)
.....+..+|.++...|++++|+++|++++++. +++ ..+++.+|.+|..+|++++|+..
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~~---~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PGS---VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 001234567888889999999999999999875 333 45678899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------------CCCc
Q 001523 256 EQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT--------------------------------RKPD 303 (1060)
Q Consensus 256 lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~--------------------------------~~~d 303 (1060)
|+++++. .+.++.....+..+ ....+..+.+.+..... ....
T Consensus 518 l~~al~~-----~P~~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 518 MRRLAQQ-----KPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHc-----CCCCHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9998875 34444433222211 00001111110000000 0000
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 304 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 304 ~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
....-..++....++..+|.+|.++|++++|+.+|++++++.+
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 0000001233345667888899999999999999998888654
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.53 E-value=8.7e-13 Score=147.59 Aligned_cols=232 Identities=12% Similarity=-0.001 Sum_probs=164.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 154 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~n 154 (1060)
....+..+.++..+.++|.... .+....+..++.+|.+|...|++++|+..|++++++ .|....+|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~ 103 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNY 103 (296)
T ss_pred cCCchHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 3344667888888888885421 234566889999999999999999999999999986 3556789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 001523 155 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 234 (1060)
Q Consensus 155 LA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~ 234 (1060)
+|.+|..+|++++|+..|++++++ .|....++.++|.++...|++++|++.|++++++. ++++.. .
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~ 169 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-A 169 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-H
Confidence 999999999999999999999985 34556789999999999999999999999999865 444421 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcH
Q 001523 235 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 314 (1060)
Q Consensus 235 a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~sv 314 (1060)
.+ ..++...+++++|+..|.+++... .++.... .+..+..+....++++........... ...+..
T Consensus 170 ~~---~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~--~l~~~~ 235 (296)
T PRK11189 170 LW---LYLAESKLDPKQAKENLKQRYEKL----DKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNT--ELAERL 235 (296)
T ss_pred HH---HHHHHccCCHHHHHHHHHHHHhhC----CccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcH--HHHHHH
Confidence 11 223456789999999997765331 2221111 122222222222222211111111000 112346
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 315 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 315 selL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
.++|.++|.+|.++|++++|+.+|++|+++..
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999998764
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.52 E-value=3.2e-12 Score=157.58 Aligned_cols=236 Identities=18% Similarity=0.214 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...++.+|.++...|++++|+.+|+++++. .+....++..++.++...|++++|+.++++++...
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------- 563 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN------- 563 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 445566677777777777777777777654 23445567777777777777777777777776542
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
+.....+..++.+|...|++++|+.++++++.. .+....++..+|.+|...|++++|+.+|+++++..
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 631 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--- 631 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 223455677788888888888888888777653 23334677888888888999999999888887753
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 304 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~ 304 (1060)
+ ....++..+|.++...|++++|+.+|++++++ .+++......+..+ +...+..+.+..+....
T Consensus 632 --~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~----- 695 (899)
T TIGR02917 632 --P---DSALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL-LLAAKRTESAKKIAKSL----- 695 (899)
T ss_pred --C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH-----
Confidence 2 23456777888888899999999988888765 34444433322222 12222233332222111
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 305 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 305 ~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
....+.....+..+|.++...|++++|+.+|++++....
T Consensus 696 ---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 696 ---QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred ---HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 111223345677788888889999999999988887654
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=1.4e-12 Score=138.20 Aligned_cols=170 Identities=20% Similarity=0.159 Sum_probs=151.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
...+.+.+++|.-|+.+|++..|..-+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345678889999999999999999999999976 5778889999999999999999999999999997
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+|....+++|.|..++.+|+|++|..+|++|+. .+.......++-|+|.|..++|+++.|.++|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 366788999999999999999999999999998 45667778899999999999999999999999999976
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+........++..+...|+|..|..++++...
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 33445677789999999999999998876544
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.1e-12 Score=146.88 Aligned_cols=192 Identities=20% Similarity=0.209 Sum_probs=166.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 70 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
-+|+.|..+++.++|+.+|++||++ +|....+|..+|.-|..+.+...|+..|++|+++. |...
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~Dy 398 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDY 398 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhH
Confidence 3588888999999999999999987 57788899999999999999999999999999985 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
++++.||++|..++-..-|+-||++|+++ .|...+.+..||.||.++++.++|+.+|++|+....
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------- 463 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------- 463 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-------
Confidence 89999999999999999999999999984 345567888999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001523 230 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 294 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeA 294 (1060)
....++..||.+|.+++++++|..+|++.++.. ...|...+.+..+..+|+.+..+..+..+|
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 134678899999999999999999999999976 455777788888888888776666555544
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=1.6e-12 Score=169.71 Aligned_cols=244 Identities=12% Similarity=0.045 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.+..+|..+...|++++|+.+|++++++ .|....+++.+|.+|..+|++++|+..|+++++.. +
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--------P 526 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--------P 526 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C
Confidence 4556788999999999999999999976 35566789999999999999999999999998752 3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------H------------HHhCCCCChhHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------------L------------HLTCGPSHPNTAAT 193 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei---------------------~------------ee~~g~d~p~~a~a 193 (1060)
.....++.+|.++...+++++|+.+++++... . ...+. .++.....
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~ 605 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRI 605 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchH
Confidence 33455667777777888888887776653110 0 00000 12333456
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 273 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~ 273 (1060)
+..||.+|..+|++++|+++|++++++. |....++.++|.+|..+|++++|+.+|+++++. .+++..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p~~~~ 672 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTRE--------PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----ANDSLN 672 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCChH
Confidence 7889999999999999999999999864 334567889999999999999999999987764 345554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 274 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 274 t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
....+..+ +...+..+.+..+........ ...........++..+|.++..+|++++|+.+|++|+.
T Consensus 673 ~~~~la~~-~~~~g~~~eA~~~~~~al~~~--~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 673 TQRRVALA-WAALGDTAAAQRTFNRLIPQA--KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHhhhC--ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43333322 223333333333333221111 00111112345677889999999999999999999986
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.47 E-value=5.7e-12 Score=160.41 Aligned_cols=235 Identities=17% Similarity=0.043 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+..++.+|.++.. +++++|+..|.+++... |. ......+|.++...|++++|+.+|++++... .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~-----p 540 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHD-----M 540 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-----C
Confidence 77889999999987 89999999999998653 22 1236667888889999999999999975431 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
. ...+..+|.++...|++++|+.+|++++.+ .+.....+..++..+..+|++++|+.+|++++++.
T Consensus 541 ~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 541 S----NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred C----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 1 234678899999999999999999999874 23334555567777778899999999999999875
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 303 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d 303 (1060)
|. ...+.++|.++.++|++++|+.+|++++.+ .+++... ...++.+....++..+++......
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a---~~nLG~aL~~~G~~eeAi~~l~~A-- 669 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNY---QAALGYALWDSGDIAQSREMLERA-- 669 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 23 567899999999999999999999999987 5666643 444554444444555544322211
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Q 001523 304 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 348 (1060)
Q Consensus 304 ~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki 348 (1060)
....+....++..+|.++..+|++++|+.+|++++++.+..
T Consensus 670 ----L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 670 ----HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred ----HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 12234566889999999999999999999999999988643
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=1.3e-11 Score=149.59 Aligned_cols=173 Identities=14% Similarity=0.048 Sum_probs=136.8
Q ss_pred hcCCcHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDK---------GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 128 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~q---------GdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle 128 (1060)
+..+...+..+..+|.++... +++++|+.++++|+++ .|....++..+|.++..+|++++|+.
T Consensus 288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 334444455666677766533 4488999999999876 46677899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHH
Q 001523 129 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 208 (1060)
Q Consensus 129 ~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdyd 208 (1060)
+|++|+++ .|....+++.+|.+|..+|++++|+.+|++++++ . |.....++.++.+++.+|+++
T Consensus 360 ~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~---P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 360 LFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----D---PTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCChhhHHHHHHHHHhccCHH
Confidence 99999997 2555778999999999999999999999999986 2 222334455666788899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 209 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 209 EAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+|+.++++++... .+.....+.++|.+|..+|++++|..++++.+.
T Consensus 424 eA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 424 DAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 9999999987642 133345678899999999999999999877544
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=1.2e-11 Score=149.90 Aligned_cols=241 Identities=14% Similarity=0.045 Sum_probs=171.2
Q ss_pred cCCcHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CCHHHH
Q 001523 59 ACSSADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQA 126 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~q---GdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l---------GdyeeA 126 (1060)
.....++..++..|..++.. +++++|+.+|++|+++ +|..+.++..||.+|..+ +++++|
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A 323 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKA 323 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHH
Confidence 44566788888888766554 3578999999999865 467788899999887744 348999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCC
Q 001523 127 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 206 (1060)
Q Consensus 127 le~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGd 206 (1060)
+.++++|+++ .|....++..+|.++..+|++++|+.+|++++++ .|....+++.+|.+|..+|+
T Consensus 324 ~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 324 KEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCC
Confidence 9999999987 3456778999999999999999999999999996 35556788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 001523 207 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 286 (1060)
Q Consensus 207 ydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~ 286 (1060)
+++|+.+|++++++. +.++ ..+..++.++..+|++++|+.++++++... .++++.. ...++.++.
T Consensus 388 ~~eAi~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~~~~---~~~la~~l~ 452 (553)
T PRK12370 388 LEEALQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDNPIL---LSMQVMFLS 452 (553)
T ss_pred HHHHHHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccCHHH---HHHHHHHHH
Confidence 999999999999875 3333 233445666777999999999999877541 2344432 233443443
Q ss_pred HHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 287 KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 287 k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
..++..+|....... ....+.-......++..|..+|+ +|...+++.++...
T Consensus 453 ~~G~~~eA~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 453 LKGKHELARKLTKEI------STQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred hCCCHHHHHHHHHHh------hhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 344433333221111 11122333456677777777774 77777777655544
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=4.9e-13 Score=157.62 Aligned_cols=236 Identities=17% Similarity=0.149 Sum_probs=177.6
Q ss_pred ccccCCCCchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 18 VHKVPNYDKKDGTSFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 97 (1060)
Q Consensus 18 i~k~~n~~~aea~~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ek 97 (1060)
.+..+.+.-.+.+.+|+..+...++-...-.+ ...+-...+.+ -..+-.+|++|--+++++.|+++|++|+++
T Consensus 378 ~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L--aq~Li~~~~~s--PesWca~GNcfSLQkdh~~Aik~f~RAiQl--- 450 (638)
T KOG1126|consen 378 LVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL--AQDLIDTDPNS--PESWCALGNCFSLQKDHDTAIKCFKRAIQL--- 450 (638)
T ss_pred HHHhhccccccchhHHHHHHHHHHhhHHHHHH--HHHHHhhCCCC--cHHHHHhcchhhhhhHHHHHHHHHHHhhcc---
Confidence 33334455566677776665555442211111 11111233333 346777899999999999999999999976
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 98 VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 98 ilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
++..+.+|..+|.=+..+.+|+.|..+|++||.+. +....+|+.||.+|.++++++.|+-+|++|++
T Consensus 451 -----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 451 -----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred -----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 57788999999999999999999999999999873 55678999999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 178 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 178 i~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
+ .|....++..+|.++.++|+.++|+.+|++|+.+. +....+.+..|.++..+++|++|+..++
T Consensus 518 I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 518 I--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred C--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 6 46666778889999999999999999999999865 2234567788999999999999999888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001523 258 TTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 297 (1060)
Q Consensus 258 kALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~ 297 (1060)
+.-++. ++ -......++..+...+....|+..
T Consensus 582 eLk~~v-----P~---es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 582 ELKELV-----PQ---ESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHhC-----cc---hHHHHHHHHHHHHHHccchHHHHh
Confidence 765552 33 333444455555555555555544
No 27
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=161.38 Aligned_cols=244 Identities=35% Similarity=0.536 Sum_probs=230.3
Q ss_pred CCCChhhhcccccccccCCCCchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHH
Q 001523 5 SPFRKIDVVSLVPVHKVPNYDKKDGTSFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDA 84 (1060)
Q Consensus 5 ~p~~~~dI~~LvPi~k~~n~~~aea~~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEA 84 (1060)
.+|...||+++.|+++ +..+...++...++.+......|.+.+|
T Consensus 908 s~f~~~Di~~~~p~ik------------------------------------~s~P~~~~a~~~~e~gq~~~~e~~~~~~ 951 (1236)
T KOG1839|consen 908 SEFNDSDILNLRPVIK------------------------------------HSSPTVSEAKDSPEQGQEALLEDGFSEA 951 (1236)
T ss_pred CCCCcccccccccccc------------------------------------cCCCccchhhhhhhhhhhhhcccchhhh
Confidence 7899999999999999 6677777788888889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001523 85 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 164 (1060)
Q Consensus 85 i~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGd 164 (1060)
.+ .-+++.++....+.-++..+..|..|+.++..+|++++|+.+.++|.-+.++..+.+++.....|.+++...+..++
T Consensus 952 ~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 952 YE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred hh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 99 99999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001523 165 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 244 (1060)
Q Consensus 165 yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~ 244 (1060)
...|+..+.+++.+..-.++++||..+.+..+++.++...++++.|+++++.|+.+...+.|+.+..++.++..+++++.
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 99999999999999888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001523 245 LMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 285 (1060)
Q Consensus 245 ~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~ 285 (1060)
.++++..|..+.+.++.+++..+|++|.++.....|+...-
T Consensus 1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~~T 1151 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNLST 1151 (1236)
T ss_pred hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHHhh
Confidence 99999999999999999999999999999988888886433
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.8e-12 Score=145.46 Aligned_cols=246 Identities=15% Similarity=0.065 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
-++++...|..++-.|++-.|...|.+++.+. +.....|..+|.+|....+-++....|.+|.++
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------- 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------- 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------
Confidence 48889999999999999999999999999773 344455899999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
++....+|+..|.+++-+++|++|+.-|++++.+ .|..+..+..++.+.++++++++++..|+++.+.+
T Consensus 390 -dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-- 458 (606)
T KOG0547|consen 390 -DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-- 458 (606)
T ss_pred -CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 3445677999999999999999999999999985 56778899999999999999999999999999866
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 302 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~d-h~~t~~al~~La~l~~k~~e~AeAl~~~~~~~ 302 (1060)
|....+|...|.++..+++|++|++.|.+|+++.....+-. ....+.-...+...-.+....+..+...+..+
T Consensus 459 ------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 459 ------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred ------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 55567888889999999999999999999999854321110 11111111111111123333343443333333
Q ss_pred chhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 303 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 303 d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
+ +.-..++..||.+..++|+.++|+++|++++.+.++..
T Consensus 533 D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 533 D--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred C--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 3 34456788899999999999999999999999988643
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-11 Score=139.68 Aligned_cols=243 Identities=14% Similarity=0.152 Sum_probs=182.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH---------------------------HHhcCCCChhHHHHHHHHHHHHHHcC
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKL---------------------------VAVCGPYHRMTAGAYSLLAVVLYHTG 121 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~---------------------------ekilg~d~p~~A~A~~~LA~ly~~lG 121 (1060)
-..|.+.+.+.|+++|+..|+..++.. +.++ .-+......+..+|+.|...+
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccceeeehhHHHHHH
Confidence 345888899999999999999887530 0000 011222345556788888899
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Q 001523 122 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 201 (1060)
Q Consensus 122 dyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy 201 (1060)
+.++|+.||++||++. +....++..+|.-|..+.+...|++.|++|+++ .|...++|+.||.+|
T Consensus 345 eHEKAv~YFkRALkLN--------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLN--------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAY 408 (559)
T ss_pred hHHHHHHHHHHHHhcC--------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHH
Confidence 9999999999999983 557888999999999999999999999999997 455678999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001523 202 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 281 (1060)
Q Consensus 202 ~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~L 281 (1060)
..++...=|+-||++|+.+. |...+.+..||.||.++++.++|+..|++|+.. ++.. ..++..|
T Consensus 409 eim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dte---~~~l~~L 472 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDTE---GSALVRL 472 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----cccc---hHHHHHH
Confidence 99999999999999999875 344567788999999999999999999999875 3332 2345556
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchh-hhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 282 EYFESKAFEQQEAARNGTRKPDAS-IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 282 a~l~~k~~e~AeAl~~~~~~~d~~-~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
+.++.+..+..+|.......+... ..+...+....+...|+.-+.+.++|++|-.|..+++.-
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 666665555555544333222211 112223345667777999999999999999988776654
No 30
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=1.7e-11 Score=131.10 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=148.2
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
...+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|..+|++++|+..|+++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 4457789999999999999999999999998763 4456667889999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhCCCCChhHH--------------HHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTA--------------ATYINVAM 199 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~l--------GdyeeAleyyekALei~ee~~g~d~p~~a--------------~a~~nLA~ 199 (1060)
++++....+++.+|.++..+ |++++|++.|++++.... ++.... .....+|.
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666889999999886 889999999999987521 222111 12347899
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 200 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 200 iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
+|..+|++.+|+..|+++++.+ ++++....+++.+|.++..+|++++|..+++...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999876 4556778899999999999999999999877654
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.9e-11 Score=125.90 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
.....+..+|.++..+|++++|+.+|++++++. +....++..+|.+|..+|++++|+.+|++++...
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----- 129 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----- 129 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----
Confidence 345677889999999999999999999999762 3445688999999999999999999999998742
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
..+.....+.++|.+|...|++++|+.+|.+++... +.....+..+|.++..+|++++|+.++++++...
T Consensus 130 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 199 (234)
T TIGR02521 130 -LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQTY- 199 (234)
T ss_pred -ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 223345678899999999999999999999999852 2235678899999999999999999999998862
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+.. ...+..++.++...|+.++|..+.+.+..
T Consensus 200 ----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 200 ----NQT---AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred ----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 222 34455678999999999999988776544
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=1.2e-11 Score=157.40 Aligned_cols=236 Identities=16% Similarity=0.017 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
...+.+|..+...|++++|+..|++++.. .+. ...+..+|.++...|++++|+.+|++++++.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------- 572 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------- 572 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence 34666788888999999999999987533 111 2356788999999999999999999998752
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeil 225 (1060)
+.....+..++..+..+|++++|+.+|++++++ .|. ..++.++|.++..+|++++|+.+|++++.+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~---- 639 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE---- 639 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 333455566777777889999999999999985 233 6788999999999999999999999999875
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 305 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~ 305 (1060)
|....++.++|.++..+|++++|+.+|++++++ .++++.... +++.+....++..++.......+.
T Consensus 640 ----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~---nLA~al~~lGd~~eA~~~l~~Al~-- 705 (987)
T PRK09782 640 ----PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIR---QLAYVNQRLDDMAATQHYARLVID-- 705 (987)
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 444578899999999999999999999999987 567665443 444444444444444332211111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 306 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 306 ~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
..+....+...+|.+...+.++..|.+.|+++..+.....
T Consensus 706 ----l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 706 ----DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ----cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 1245566777888888888999999999988888766544
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=1.2e-10 Score=130.31 Aligned_cols=176 Identities=18% Similarity=0.088 Sum_probs=137.0
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
...+..++.+|.+|...|++++|+..|++++++ .|....+++.+|.+|..+|++++|+..|++++++
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----- 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----- 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345788999999999999999999999999976 4667889999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.|....++.++|.+|...|++++|++.|++++++ .++++.. .....++...+++++|++.|.+++...
T Consensus 128 ---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~----~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 128 ---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR----ALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH----HHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 2455778999999999999999999999999985 2233311 111223445677888888886654321
Q ss_pred H----------HhcCCC-------------------cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 222 Q----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 222 e----------eilG~d-------------------hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
. -..+.. .+....+|++||.++..+|++++|+.+|++++++
T Consensus 196 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0 001110 1123467899999999999999999999999976
No 34
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.38 E-value=1.4e-10 Score=128.78 Aligned_cols=275 Identities=14% Similarity=0.039 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~-p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
+......+++.+++.+....++.+++.|..-.+.+-- .+. ..-..+...||.++..++.|++++++|++|+.+..
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg----t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPG----TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC----CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 3344456667777777777777777777766665421 111 12235667799999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 139 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--HPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 139 k~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d--~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
.. .|......++..||.+|..+.|+++|+-+..+|+++.....-.+ ......+++.++..|..+|++-.|.++.++
T Consensus 154 ~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 154 NN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred cc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 64 34444567899999999999999999999999999977653222 223466788999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-----
Q 001523 217 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ----- 291 (1060)
Q Consensus 217 ALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~----- 291 (1060)
|.++.... .+.+..+.++..+|.+|+.+|+.+.|..-|++|+.+...+ |+. -....++...+.......-.
T Consensus 232 a~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdr-mgqv~al~g~Akc~~~~r~~~k~~~ 307 (518)
T KOG1941|consen 232 AMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDR-MGQVEALDGAAKCLETLRLQNKICN 307 (518)
T ss_pred HHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhh-HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99998665 5667788999999999999999999999999999987665 221 11122222222211111111
Q ss_pred HHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 292 QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 292 AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
-+++....+.++....-.....+..+...++.+|+.+|.-++=...+.++-+.
T Consensus 308 Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 308 CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 11222222233333334444567788999999999998887766666555544
No 35
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=2.5e-10 Score=145.07 Aligned_cols=275 Identities=12% Similarity=-0.026 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+.....++.++...|++++|..+++++++... ..+......++..+|.++...|++++|+.++++++.+.... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g- 525 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D- 525 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-
Confidence 445555678889999999999999999987521 11222345677889999999999999999999999988754 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
.......++.++|.++..+|++++|..++++++.+.....+...+....++..+|.+++.+|++++|..++.+++.+...
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 22234567889999999999999999999999999877654333444555778999999999999999999999998764
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHH--------------------------
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA-------------------------- 277 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~a-------------------------- 277 (1060)
.. ......++..+|.++...|++++|..++.+++.+.... + .+......
T Consensus 606 ~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 606 YQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred cC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 32 22345677789999999999999999999998775432 1 11100000
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 278 -------------AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 278 -------------l~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
...++......++..++......................++..+|.+|..+|++++|..++.+|+++
T Consensus 681 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 681 KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0111111111122222211111111111111222234567777888888889988899999888888
Q ss_pred hhhh
Q 001523 345 KGNF 348 (1060)
Q Consensus 345 ~~ki 348 (1060)
....
T Consensus 761 a~~~ 764 (903)
T PRK04841 761 ANRT 764 (903)
T ss_pred hCcc
Confidence 7653
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.2e-11 Score=141.55 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=179.1
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+..-+..+-.++..|..|+..|++.+|+++|.+|-.+ ++..+.+|...|..|...|+.++|+.+|..|-+++
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 3444555778888999999999999999999999866 56778899999999999999999999999999886
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
.. - | .-+..+|.-|.++++++.|.++|.+|+.++ |.....+..+|.+.+..+.|.+|..+|+.+
T Consensus 377 ~G---~-h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 377 PG---C-H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred cC---C-c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 32 1 2 235679999999999999999999999973 333456788999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 297 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~ 297 (1060)
+...+... .+.+...-.+.+||.+|++++.+++|+.+|+++|.+. +.+
T Consensus 441 l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~-------------------------- 488 (611)
T KOG1173|consen 441 LEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKD-------------------------- 488 (611)
T ss_pred HHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCc--------------------------
Confidence 97665553 3333455678899999999999999999999998762 221
Q ss_pred cCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 298 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 298 ~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
.+++..+|.+|..+|+++.|+.+|.+||-+.+-
T Consensus 489 -----------------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 489 -----------------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred -----------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 245677888889999999999999999987664
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.2e-11 Score=132.46 Aligned_cols=240 Identities=17% Similarity=0.088 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..--++|++|+..|.+.+|.+.++.+|... ...+.+..|+.+|....+...|+..|.+.++.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------- 286 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------- 286 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--------
Confidence 334458999999999999999999999753 234578899999999999999999999998864
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeil 225 (1060)
|.....+..+|.++..++++++|+++|+.+++. ++....+.-.+|.-|+..++.+-|+.||++.|.+-
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG---- 354 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG---- 354 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc----
Confidence 555677889999999999999999999999984 44445666668888999999999999999999864
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 305 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~ 305 (1060)
... ...++|+|.|++..++++-++..|++|+.... ......+...+|+.+....++.-.+.+....
T Consensus 355 -~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl----- 420 (478)
T KOG1129|consen 355 -AQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRL----- 420 (478)
T ss_pred -CCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHH-----
Confidence 333 46789999999999999999999999998742 2233445555555544444444333322111
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 306 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 306 ~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
.........+.|.+||.+..+.|+.++|..+|..|-.+.+.++
T Consensus 421 -aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 421 -ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred -HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 1123345678899999999999999999999999888777655
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.34 E-value=8e-11 Score=143.35 Aligned_cols=257 Identities=15% Similarity=0.084 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
..++..++..|+..|+|..+..++..|+... ......+..++++|.+|+.+|+|++|..||.+++... .+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d 339 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND 339 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC
Confidence 4466778999999999999999999998764 2345678899999999999999999999999998863 22
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKC 220 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lG----dydEAie~yekALei 220 (1060)
+ ....+..||.+|...|+++.|..+|++.+.. .+....++..||.+|...+ ..++|..++.++++.
T Consensus 340 ~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 340 N--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred C--ccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 2 4567889999999999999999999999885 3455677777888888776 556677777776664
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~ 300 (1060)
. +....+|..||.+|....-+ .++.+|..|+.++......--+..+...+.+.+... ....+......++
T Consensus 410 ~--------~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g-~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLG-NIEKALEHFKSAL 479 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc-ChHHHHHHHHHHh
Confidence 3 44567788888877654444 448888888888777666544555444444433322 2222222111111
Q ss_pred CCchhhhhcC--CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcCC
Q 001523 301 KPDASIASKG--HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 351 (1060)
Q Consensus 301 ~~d~~~a~~~--~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~ 351 (1060)
.........+ ......+.+++|.+++..+++..|.+.|+.+++.++.....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 1100000000 11124467788888888888888888888888877765443
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=1.3e-10 Score=123.45 Aligned_cols=208 Identities=17% Similarity=0.135 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
...+.++..||.-|+..|++..|...+++||++ +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345678899999999999999999999999997 4667889999999999999999999999999995
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
++....+++|.|..++.+|++++|..+|.+|+.. +..+....++.|+|.|..++|+++.|..+|+++|++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 5667889999999999999999999999999874 455667789999999999999999999999999997
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 264 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 264 rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
.++.+.....+..+.+-.... -.+..+.... . .. ....++.|.....+-...|+-+.|-.|=.+..+
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~~y-~~Ar~~~~~~------~-~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAGDY-APARLYLERY------Q-QR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcccc-hHHHHHHHHH------H-hc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555544444443322222 2222221100 0 00 112234455555677888999988887766665
Q ss_pred Hhhh
Q 001523 344 VKGN 347 (1060)
Q Consensus 344 L~~k 347 (1060)
+++.
T Consensus 236 ~fP~ 239 (250)
T COG3063 236 LFPY 239 (250)
T ss_pred hCCC
Confidence 5553
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.8e-11 Score=139.32 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.-|..|..+++.|++.+|.-+|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP 350 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DP 350 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CC
Confidence 3466799999999999999999999854 6899999999999999999999999999999997 46
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------HhCCC----------------------CCh--hHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH-----------LTCGP----------------------SHP--NTA 191 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e-----------e~~g~----------------------d~p--~~a 191 (1060)
....++..||..|...|.-.+|++++.+-+..-- ...+. .++ ...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 6788999999999999999999999988765410 00000 011 223
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCC
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 271 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh 271 (1060)
.++..||.+|...|+|++|++||+.||... |.....|..||-.+..-.+..+|+..|++||++. +
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-----P-- 495 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-----P-- 495 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----C--
Confidence 556778888888888888888888887643 5556677888888888888888888888888762 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcCC
Q 001523 272 LRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQD 351 (1060)
Q Consensus 272 ~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~ 351 (1060)
....+.++||..|..+|.|.+|+.+|-.||.+.++....
T Consensus 496 -----------------------------------------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 496 -----------------------------------------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred -----------------------------------------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 223346789999999999999999999999999987655
Q ss_pred CCCCC
Q 001523 352 NNLTS 356 (1060)
Q Consensus 352 ~n~~~ 356 (1060)
...-+
T Consensus 535 ~~~~~ 539 (579)
T KOG1125|consen 535 NKAPM 539 (579)
T ss_pred ccCCc
Confidence 54433
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.32 E-value=4.6e-10 Score=141.04 Aligned_cols=250 Identities=14% Similarity=0.015 Sum_probs=169.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....+..+..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.+++++++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--- 113 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--- 113 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 4455667888999999999999999999999976 35556778899999999999999999999998862
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA--- 217 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA--- 217 (1060)
|.... +..+|.++...|++++|+..|++++++ .|....++..+|.++...++.++|+..++++
T Consensus 114 -----P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 114 -----PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred -----CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 34455 888999999999999999999999995 3444566677888888888888777666532
Q ss_pred ------------------------------------HHHHHHhcC------CCcHHHHHHHHH-HHHHHHhcCChhHHHH
Q 001523 218 ------------------------------------LKCNQRLLG------PDHIQTAASYHA-IAIALSLMEAYPLSVQ 254 (1060)
Q Consensus 218 ------------------------------------Lei~eeilG------~dhp~~a~a~~n-LA~ly~~lGdyeEAie 254 (1060)
++.++.... ...+....++.. ++ ++..+|++++|+.
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~ 258 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVIS 258 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence 222211110 011222333332 34 3457789999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCC-CcHHHHHHHHHHHHHHCCCHHH
Q 001523 255 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGH-LSVSDLLDYINPSHDTKGRNVS 333 (1060)
Q Consensus 255 ~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~-~svselL~~Lg~~y~~qGqyeE 333 (1060)
.|+++++. ++..+..........++..+..+.+........... ... ......+..|+.++.++|++++
T Consensus 259 ~~~~ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 259 EYQRLKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP-----ETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HHHHhhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHH
Confidence 98887654 222233222222334555555555554443222111 111 1112445566777889999999
Q ss_pred HHHHHHHHHHHhh
Q 001523 334 TLKRKTYVAKVKG 346 (1060)
Q Consensus 334 Al~~YeqALkL~~ 346 (1060)
|+.++++++...+
T Consensus 329 A~~~l~~~~~~~P 341 (765)
T PRK10049 329 ALTVTAHTINNSP 341 (765)
T ss_pred HHHHHHHHhhcCC
Confidence 9999998887754
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.3e-10 Score=129.27 Aligned_cols=203 Identities=14% Similarity=0.106 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
+..+.++.+.|.+-+..|++++|.+.|++||.- +.....+++|+|..+..+|++++|+++|.+.-.++..
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n-- 556 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-- 556 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh--
Confidence 444556666666767777777777777777652 3346677788888888888888888888776665432
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+..++.+|.+|..+.+..+|+++|-++..+. +.+| .++..||.+|-+.|+-.+|.+++-..+..+
T Consensus 557 ------n~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl~dlydqegdksqafq~~ydsyryf 622 (840)
T KOG2003|consen 557 ------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYF 622 (840)
T ss_pred ------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 35677778888888888888888887776654 3333 456667888888888888877766555443
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 264 RAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 341 (1060)
Q Consensus 264 rkllg~dh~~t~~al~~La~l~~--k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqA 341 (1060)
+..+....||+.++. +..+.+..+.... .-..+.....-..++.++++.|+|.+|+..|++.
T Consensus 623 --------p~nie~iewl~ayyidtqf~ekai~y~eka--------aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 623 --------PCNIETIEWLAAYYIDTQFSEKAINYFEKA--------ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred --------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH--------HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 333455667763332 2222222222211 1123445555667899999999999999999876
Q ss_pred HHHhh
Q 001523 342 AKVKG 346 (1060)
Q Consensus 342 LkL~~ 346 (1060)
.+-+.
T Consensus 687 hrkfp 691 (840)
T KOG2003|consen 687 HRKFP 691 (840)
T ss_pred HHhCc
Confidence 65444
No 43
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.31 E-value=1.9e-10 Score=127.83 Aligned_cols=300 Identities=13% Similarity=0.052 Sum_probs=221.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001523 31 SFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAY 110 (1060)
Q Consensus 31 ~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~ 110 (1060)
+++.+++..|...+. +.......-+.|-.+......+|.|.+++.+.-..++.+... .+......++
T Consensus 20 ~~~~~al~~w~~~L~-----------~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~ 86 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLE-----------KLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAY 86 (518)
T ss_pred chHHHHHHHHHHHHH-----------HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 346778888887444 222333344555566778889999999998888777776655 4556778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhH
Q 001523 111 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 190 (1060)
Q Consensus 111 ~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~ 190 (1060)
.+|+..+....+|.+++.|....+.+--...+ ..-......||.++..++.|++++++|++|+.+..... +...-
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LE 161 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DAMLE 161 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--Cceee
Confidence 99999999999999999998888775211111 12235667799999999999999999999999987654 33445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-CCCc-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcC
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL-GPDH-IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~eeil-G~dh-p~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg 268 (1060)
..++..||.+|..+.++++|+-+..+|+++..... +..+ .....+++.++..++.+|+.-+|.++.+++.++.-..
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~-- 239 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH-- 239 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--
Confidence 67889999999999999999999999999987663 2222 2345678889999999999999999999999987654
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHH
Q 001523 269 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS-----TLKRKTYVAK 343 (1060)
Q Consensus 269 ~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeE-----Al~~YeqALk 343 (1060)
.+.+.....+..++.++...++...++..+..+...-....+.....+++.-++.+.....-..+ |+++-++.++
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~le 319 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLE 319 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 35566667777888888888888777766554444333333334444556666666654444444 8888888888
Q ss_pred HhhhhcC
Q 001523 344 VKGNFYQ 350 (1060)
Q Consensus 344 L~~ki~~ 350 (1060)
+..+++.
T Consensus 320 vA~~IG~ 326 (518)
T KOG1941|consen 320 VASSIGA 326 (518)
T ss_pred HHHHhhh
Confidence 8877663
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.28 E-value=5e-10 Score=119.88 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 103 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 103 ~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
....+..++.+|..++..|+|++|+..|++++... ++++....+++.+|.+|..+|++++|+..|+++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 45667899999999999999999999999998864 4455566789999999999999999999999999863
Q ss_pred CCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH--------------HHHHH
Q 001523 183 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAAS--------------YHAIA 240 (1060)
Q Consensus 183 ~g~d~p~~a~a~~nLA~iy~~l--------GdydEAie~yekALei~eeilG~dhp~~a~a--------------~~nLA 240 (1060)
++++....+++.+|.++... |++++|++.|++++... +++.....+ ...+|
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566888999999886 88999999999998765 333322222 23567
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHH
Q 001523 241 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 320 (1060)
Q Consensus 241 ~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~ 320 (1060)
.+|..+|++.+|+..|+++++.+ ++ .+...+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~----------------------------------------~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PD----------------------------------------TPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CC----------------------------------------CcchHHHHHH
Confidence 77777777777777777766542 11 1234567889
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q 001523 321 INPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 321 Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
+|.+|..+|++++|..+++....
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998876544
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.28 E-value=1.3e-09 Score=136.90 Aligned_cols=253 Identities=11% Similarity=-0.027 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...++.+|.++...|++++|+.+++++++. .|.... +..+|.++...|++++|+..|++++++.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~------- 146 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA------- 146 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 445668899999999999999999999976 355566 8899999999999999999999999973
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------------HHHHHHHhCC-
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKR---------------------------------------ALYLLHLTCG- 184 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyek---------------------------------------ALei~ee~~g- 184 (1060)
|....++..+|.++...++.++|+..+++ |++.++....
T Consensus 147 -P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 147 -PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 44566677788888888888877766652 2222222110
Q ss_pred -CC----ChhHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 185 -PS----HPNTAATYIN-VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 185 -~d----~p~~a~a~~n-LA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
+. .+....++.. ++. +..+|++++|+..|+++++.. +..+..+..+ +|.+|..+|++++|+.+|++
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~~ll~~~-----~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQRLKAEG-----QIIPPWAQRW--VASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred cccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhhccC-----CCCCHHHHHH--HHHHHHhcCCcHHHHHHHHH
Confidence 01 1222333333 444 467799999999999987642 2224443333 68899999999999999998
Q ss_pred HHHHHHHHcCCCCHH-HHHHHHHH--HHHHHHHHHHHHHHHhcCCCCchh-----hhhcCCC--cHHHHHHHHHHHHHHC
Q 001523 259 TLQILRAKLGPDDLR-TQDAAAWL--EYFESKAFEQQEAARNGTRKPDAS-----IASKGHL--SVSDLLDYINPSHDTK 328 (1060)
Q Consensus 259 ALeI~rkllg~dh~~-t~~al~~L--a~l~~k~~e~AeAl~~~~~~~d~~-----~a~~~~~--svselL~~Lg~~y~~q 328 (1060)
+++. .+.... .......| .++..+..+.+............. .....++ ....++..++.++..+
T Consensus 298 ~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 298 LFYH-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred Hhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 8753 222210 01122222 233444444444332221111100 0000011 2334566677777777
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q 001523 329 GRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 329 GqyeEAl~~YeqALkL~~k 347 (1060)
|++++|+..+++++...+.
T Consensus 373 g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPG 391 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 7777777777777766443
No 46
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=8e-10 Score=124.94 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
......+..+..++..|++++|+.+++++++. +|....++.. +..+...|++..+...+.+++.. ..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~ 107 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WA 107 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cC
Confidence 34455667899999999999999999999875 2333344444 66666667666666666666554 23
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
..++.....+..+|.++..+|++++|+..+++++++. +....++..+|.+|+.+|++++|+.++++++....
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4566677788888999999999999999999998852 33356778889999999999999999999887652
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
. ........+..+|.++..+|++++|+.+|++++
T Consensus 180 ~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 180 C----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred C----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1 112234566788999999999999999988875
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.6e-10 Score=127.77 Aligned_cols=235 Identities=15% Similarity=0.162 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG--dyeeAle~yqKALeL~ek~~g~d 144 (1060)
.-+..+..|+..|+++.|++++. ++ ++ .+......+..+|..+++.+| +|..|..|...|+.+-
T Consensus 421 lei~ka~~~lk~~d~~~aieilk-v~---~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------- 486 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILK-VF---EK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------- 486 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHH-HH---Hh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-------
Confidence 33456888999999999998653 22 22 344555567778888888754 7899999999998762
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
...+.++.|.|.+.+..|++++|.+.|++||. ++.....+++|+|..+..+|++++|+++|.+...+.
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 23567788999999999999999999999997 456678899999999999999999999999988877
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 304 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~ 304 (1060)
...+.+++.+|.+|..+.+..+|+++|-++..+ -+.++.++ ..|+.++.+.++..+++...-..-
T Consensus 555 -----~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~il---skl~dlydqegdksqafq~~ydsy-- 619 (840)
T KOG2003|consen 555 -----LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAIL---SKLADLYDQEGDKSQAFQCHYDSY-- 619 (840)
T ss_pred -----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH---HHHHHHhhcccchhhhhhhhhhcc--
Confidence 345778899999999999999999999988765 36777654 445555666666666654322211
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 305 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 305 ~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
...+...++..+|+..|....=.++|+.||++|--+..
T Consensus 620 ----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 620 ----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred ----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 12345567788899999998888999999999865543
No 48
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.6e-10 Score=134.94 Aligned_cols=187 Identities=17% Similarity=0.111 Sum_probs=160.7
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.+..+..+++++..+|.+....++-..|+..+++++++ +|....++..||..|...|.-.+|+.++.+-|..
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN 382 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 55667888999999999999999999999999999977 5888999999999999999999999998886543
Q ss_pred HHHh-----------cC----------------------CCCh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 137 NERE-----------LG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 137 ~ek~-----------~g----------------------~d~p--~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
--.. .+ ...+ ....++..||.+|...|+|++|+.+|+.||.
T Consensus 383 ~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---- 458 (579)
T KOG1125|consen 383 KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---- 458 (579)
T ss_pred CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh----
Confidence 2000 00 0011 2356788899999999999999999999998
Q ss_pred hCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 182 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 182 ~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
..|.....|+.||..+..-.+.++|+..|++||++. |.+.++++|||..|..+|.|.+|..+|-.||.
T Consensus 459 ----v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 459 ----VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred ----cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999986 77889999999999999999999999999999
Q ss_pred HHHHHc
Q 001523 262 ILRAKL 267 (1060)
Q Consensus 262 I~rkll 267 (1060)
+.++..
T Consensus 527 mq~ks~ 532 (579)
T KOG1125|consen 527 MQRKSR 532 (579)
T ss_pred hhhccc
Confidence 987743
No 49
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.22 E-value=8.2e-10 Score=122.93 Aligned_cols=191 Identities=16% Similarity=0.072 Sum_probs=147.8
Q ss_pred HHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 64 DGRQ-LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 64 dAra-LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
++.. +..-|..|...+++++|..+|.++.++..+. .+....+.++...+.+|... ++++|+.+|++|++++...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-- 107 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence 3444 4445788889999999999999999998874 55566778888888888776 9999999999999999764
Q ss_pred CCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~l-GdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
......+.++..+|.+|... |++++|+++|++|++++.... .......++..+|.++..+|+|++|+++|+++....
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 33455788999999999999 999999999999999998753 345567888999999999999999999999988754
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.... ......-..++..+.|++.+||+..|...+++....
T Consensus 186 l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 186 LENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp CCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2221 112334456677888999999999998887776544
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=2.2e-11 Score=134.31 Aligned_cols=235 Identities=20% Similarity=0.204 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 148 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~ 148 (1060)
+.+|.+++..|++++|++++.+.+... ..+.....|..+|.+...+++++.|+..|++++..-. ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--------~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--------AN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccc--------cc
Confidence 456999999999999999997765432 1244557888899999999999999999999987632 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
...+..++.+ ...+++++|+.+++++++... + ...+..+..++...++++++.++++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~------~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDG------D---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-ccccccccccccccccccccc------c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 4456667777 688999999999988776321 1 2334556777889999999999999877422 2
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhh
Q 001523 229 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 308 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~ 308 (1060)
.......+..+|.++.+.|+.++|+..|++++++ .+++......+.|+..-..+..+..+.+...... .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------~ 210 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA------A 210 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------C
Confidence 2344567788999999999999999999999987 4777777666655532111111111122111100 0
Q ss_pred cCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 309 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 309 ~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
...+ .++..+|.+|...|++++|+.+|+++++..+.
T Consensus 211 ~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 211 PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred cCHH---HHHHHHHHHhcccccccccccccccccccccc
Confidence 1122 25677899999999999999999999886653
No 51
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.21 E-value=5.2e-10 Score=124.50 Aligned_cols=227 Identities=14% Similarity=0.095 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 001523 105 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 184 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g 184 (1060)
..+..|...|.+|...++|++|..+|.++.++..+. .+....+.+|...+.+|... ++++|+.+|++|+.++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 445677777888999999999999999999998773 33455778888888888776 99999999999999998754
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 185 PSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 185 ~d~p~~a~a~~nLA~iy~~l-GdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.....+.++..+|.+|... |++++|+++|++|+++++.. ........++..+|.++..+|+|++|+..|++.....
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4556688999999999999 99999999999999999765 2445567888999999999999999999999887653
Q ss_pred HHHcCCCCHHH--HHHHHHHHHHHHHHHHHHH-HHHhcC-CCCchhhhhcCCCcHHHHHHHHHHHHH--HCCCHHHHHHH
Q 001523 264 RAKLGPDDLRT--QDAAAWLEYFESKAFEQQE-AARNGT-RKPDASIASKGHLSVSDLLDYINPSHD--TKGRNVSTLKR 337 (1060)
Q Consensus 264 rkllg~dh~~t--~~al~~La~l~~k~~e~Ae-Al~~~~-~~~d~~~a~~~~~svselL~~Lg~~y~--~qGqyeEAl~~ 337 (1060)
...-. ....+ ......|.++.....-.+. ++.... ..+. -....-..++..|-.++. ....+.+|+.-
T Consensus 186 l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~-----F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 186 LENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS-----FASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp CCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT-----STTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred hcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 21110 11112 1223334444443332222 332221 1111 112233455666656663 34567777777
Q ss_pred HHHHHHH
Q 001523 338 KTYVAKV 344 (1060)
Q Consensus 338 YeqALkL 344 (1060)
|.+..+|
T Consensus 260 ~d~~~~l 266 (282)
T PF14938_consen 260 YDSISRL 266 (282)
T ss_dssp HTTSS--
T ss_pred HcccCcc
Confidence 7554443
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=5.3e-09 Score=132.99 Aligned_cols=195 Identities=13% Similarity=-0.047 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~-d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..+..+.+++..|++++|..++.++.+........ +......+...+|.++...|++++|..++++++..... .+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~ 487 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWY 487 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccH
Confidence 34556788889999999999999887664321101 11224556677899999999999999999999875311 122
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeil 225 (1060)
.....++..+|.++...|++++|+.++++++....... .......++.++|.++..+|++++|..++++++.+.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 22456778899999999999999999999999877643 2233456788999999999999999999999999987764
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
+...+....++..+|.++..+|++++|..++++++.+.+..
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 43444444556778999999999999999999999987643
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.4e-10 Score=130.90 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=151.7
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
..-+..-+.+++..|..|...|..++|+.+|..|-+++... -.-...+|.-|..++++.-|..+|.+|+.++
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 33445556777778999999999999999999999886421 1245678999999999999999999999985
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
|...-+++.+|.+.+..+.|.+|+.+|+.++...+.... ......-++.|||.+|.+++++++|+.+|+++
T Consensus 411 --------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 411 --------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred --------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 344567899999999999999999999999977666543 33356677899999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
|.+. +..+.++..+|.+|..+|+++.|+.+|.++|.+
T Consensus 482 L~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 482 LLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9876 445678888999999999999999999999987
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.1e-08 Score=113.08 Aligned_cols=243 Identities=13% Similarity=0.046 Sum_probs=187.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
-|-.|.-++-..+.++|+..|...++. ++...++...||.+|...|+.+.|+...+-.++-- +.....
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~q 105 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQ 105 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHH
Confidence 355688888889999999999988853 57888999999999999999999999887765531 111234
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 227 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~ 227 (1060)
...++..||.-|+..|-++.|+..|....+. ......++..|-.+|....+|++|++..++...+..+ .
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~ 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence 5678899999999999999999999887662 2233567888999999999999999999887776522 2
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh
Q 001523 228 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 307 (1060)
Q Consensus 228 dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a 307 (1060)
....++..|+.||..+....+++.|..++++|++.- +. ...+-..++.+....++.+.+.... ..+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-----~~---cvRAsi~lG~v~~~~g~y~~AV~~~-----e~v~ 241 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-----KK---CVRASIILGRVELAKGDYQKAVEAL-----ERVL 241 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-----cc---ceehhhhhhHHHHhccchHHHHHHH-----HHHH
Confidence 356788999999999999999999999999999862 22 2333344455555555555554322 2233
Q ss_pred hcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 308 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 308 ~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
..+...+.+++..|..+|.++|+.++.+.++.++++...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 455667889999999999999999999999998887654
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.7e-10 Score=128.69 Aligned_cols=180 Identities=17% Similarity=0.121 Sum_probs=147.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
+......|+.+|.+++-.++|++|+.-|++++.+ .|..+.++..++.+.+++++++++...|+.+..-+
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--- 458 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--- 458 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3444558999999999999999999999999977 57888999999999999999999999999998764
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALK 219 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~-~lGdydEAie~yekALe 219 (1060)
|....+|+..|.++..+++|++|+++|.+|+++-....+. + ..+..+.+-|.+.. -.+++..|+.++.+|++
T Consensus 459 -----P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~-v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -----PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-I-VNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -----CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-c-ccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 6678899999999999999999999999999975432110 1 11233334443322 34899999999999998
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 220 CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 220 i~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
+. |..-.++..||.+..++|+.++|+++|+++..+.+..
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 75 4456788899999999999999999999999887554
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.1e-09 Score=118.27 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=160.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
......+..+|.+++..|++++|+..|++++-+ +|.....+-..|.++...|++++-..+....+.+..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 334567888999999999999999999998754 467777777778888888888776666655555421
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
..+.-++--+.+++...+|..|+.+.+++++. .+....+++.-|.++..+|+.++|+-.|+.|..+.
T Consensus 298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 12344555666677777888888888887774 33345667777888888888888888888777665
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH------HcC-------------------------CC
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA------KLG-------------------------PD 270 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk------llg-------------------------~d 270 (1060)
|....+|..|-.+|...|++.+|......++..+.. ++| ++
T Consensus 365 --------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 365 --------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred --------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 556677777777777777777777666665554421 111 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 271 DLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 271 h~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
..........|...++...+.-.-+... -.+. .-..++..||.++..++.+.+|+.+|..||++.++..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~---------L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKH---------LIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHH---------Hhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 2222222222222222221111111110 0011 1235678899999999999999999999999988643
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.13 E-value=1.7e-08 Score=122.91 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=139.4
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
..+.+.++..|+.++.+|++++|+.++.++++. .|....+|+.||.+|..+|+.++|+.....|-.+.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---- 203 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---- 203 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC----
Confidence 556889999999999999999999999999976 47778899999999999999999999988876652
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+. ....|..++.....+|++.+|.-||.+|++. .|......+.-+.+|.++|++..|++.|.+++...
T Consensus 204 -p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 204 -PK---DYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD 271 (895)
T ss_pred -CC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 22 2366888999999999999999999999985 34457788899999999999999999999998875
Q ss_pred HHhcCCCc-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 222 QRLLGPDH-IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 222 eeilG~dh-p~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
- +.. ..........+..+...++.+.|++.+..++.
T Consensus 272 p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 272 P----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred C----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2 111 22233344556667777777777777777766
No 58
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.12 E-value=1.6e-11 Score=153.63 Aligned_cols=369 Identities=45% Similarity=0.609 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001523 81 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 160 (1060)
Q Consensus 81 yeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~ 160 (1060)
.++|.+++.+++-.....++..+....-++.. +.++...+++.+|..+-++++++.+..++.++|+++..|..++..++
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~ 718 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPY 718 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeee
Confidence 44788888888877766666665555545444 99999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001523 161 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 240 (1060)
Q Consensus 161 ~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA 240 (1060)
+...+++|+.+-.+++.++...++..++..+..|.+.+.+-...+ +-++++++.+++...+..+.+|...+.+ +.|+
T Consensus 719 dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln 795 (1236)
T KOG1839|consen 719 DGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALN 795 (1236)
T ss_pred cccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHH
Confidence 999999999999999999999998888888888777777766666 8899999999999999989888887777 5555
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHH
Q 001523 241 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 320 (1060)
Q Consensus 241 ~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~ 320 (1060)
.++--++. |...-+..+++++.. ....+.+. .....++..+....+.....++.+
T Consensus 796 ~~ls~~~~---av~~~~t~~~~~ka~---------------------~~~~~~~~-~g~~k~~~S~~s~~~l~~s~L~~~ 850 (1236)
T KOG1839|consen 796 CLLSVMEA---AVQKEQTTLEILKAK---------------------DLRTQDAA-AGTPKPDASISSKGHLSVSDLLKY 850 (1236)
T ss_pred HHhhcccc---cCCCccchHHHHhhh---------------------hhhhhhhc-cCCCCcccccccccccchhHHHHh
Confidence 55444332 333333333332221 00001111 145556666677778888888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcchhhhhhcCcccccCCCCCCCCccccCCCCCcchhhHHHH
Q 001523 321 INPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESSDEETHAPEPESDTDVNQGSSIPFQQQELVVE 400 (1060)
Q Consensus 321 Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~~n~~~~~ia~ke~~~e~~d~~aqv~E~~~~~~~~~~~~~~~~~~~~~~~ 400 (1060)
|..-....+.+......+.++......... +..+.....+....-.++...+.. +.+.+... ..-...
T Consensus 851 I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~i~~~~r~~~~e~~-~~ks~f~~--~Di~~~ 918 (1236)
T KOG1839|consen 851 ITADSKNKFTAAHDVKSRETILLKNGKSKI---------AVEKLEKKKRELQKPARNYDFESS-EPKSEFND--SDILNL 918 (1236)
T ss_pred ccccccccccchhhhhHHHHHhhhcccchh---------HHHHHHHHhhhcchhhhhcccccc-CCCCCCCc--cccccc
Confidence 866555556666666666666664444322 222222222222222222222111 11111111 000000
Q ss_pred HhhccCCCc--cc---cccccccccCCCCCccc-cccCCCCCCCccccccCccccccccccccccccccccccccCCCCC
Q 001523 401 ESAVEKPNI--TE---EISSAIHEEGDDGWQPV-QRLRSAGSYGRRLKQRRATIGKVHSYQKRNADAVIDYSSAKSSHHS 474 (1060)
Q Consensus 401 ~~~~~~~~~--~~---~~~~~~~~~~d~g~~~~-~~~rs~~~~~~~~~~~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1060)
...++.... .+ ....-++.-.+|||+++ .+++|.+.-++..+.++|..++.|.+..+......|+...++. .
T Consensus 919 ~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~--~ 996 (1236)
T KOG1839|consen 919 RPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQ--Q 996 (1236)
T ss_pred ccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHh--c
Confidence 011111111 11 11112455569999987 4588889999999999999999999999999999999877654 5
Q ss_pred CceeecccCccCCCCCCC
Q 001523 475 SRYYLLKKRAVSHGSSAD 492 (1060)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (1060)
-+++..+.|..+-.++.+
T Consensus 997 ~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 997 RKACIISERVLGKDSPNT 1014 (1236)
T ss_pred ccceeeechhccCCCHHH
Confidence 578889999888766444
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=6.7e-09 Score=117.42 Aligned_cols=210 Identities=17% Similarity=0.066 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+..+..+|..+...|+++.|...+.++.+.... ...........|.++...|++++|+.+++++++..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------ 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDY------ 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence 3556777888999999999998888888776532 23445567788999999999999999999998862
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
|....++.. +..+..+|++..+...+.+++.. ....++.....+..+|.++..+|++++|+..+++++++.
T Consensus 74 --P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 144 (355)
T cd05804 74 --PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-- 144 (355)
T ss_pred --CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 223344444 66677777766666666666553 234567777888899999999999999999999999975
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 303 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d 303 (1060)
++. ..++..+|.+|...|++++|+.++++++.... ..+.
T Consensus 145 ---p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~-----~~~~------------------------------ 183 (355)
T cd05804 145 ---PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD-----CSSM------------------------------ 183 (355)
T ss_pred ---CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC-----CCcc------------------------------
Confidence 222 45678899999999999999999998876531 1100
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 304 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 304 ~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
.....+..++.++..+|++++|+.+|++++.
T Consensus 184 ---------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 ---------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred ---------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1112355677788888888888888888743
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.10 E-value=4.2e-10 Score=124.20 Aligned_cols=239 Identities=22% Similarity=0.200 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
..+...+..+|.+....+++++|+..|++++... +.....+..++.+ ...+++++|+.+++++.+...
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--- 108 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG--- 108 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc--------ccccccccccccc-ccccccccccccccccccccc---
Confidence 3344566668899999999999999999998652 2244456667777 688999999999988765421
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
. ...+..+..++...++++++...++++.... ..+.....+..+|.++...|++++|+++|++++++.
T Consensus 109 ---~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 109 ---D---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ---c---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1 2334556778899999999999999977421 223456778899999999999999999999999986
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 301 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~ 301 (1060)
++ ...+...++.++...|+++++...++...+.. +.++..+..+ +......++..+|+.....
T Consensus 177 -----P~---~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~l---a~~~~~lg~~~~Al~~~~~- 239 (280)
T PF13429_consen 177 -----PD---DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDAL---AAAYLQLGRYEEALEYLEK- 239 (280)
T ss_dssp -----TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHH---HHHHHHHT-HHHHHHHHHH-
T ss_pred -----CC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHH---HHHhccccccccccccccc-
Confidence 33 34556678899999999999877776655543 2333333333 2223333333333322111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 302 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 302 ~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
....++.-..++..+|.++...|++++|..+++++++...
T Consensus 240 -----~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 240 -----ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -----HHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccC
Confidence 1112334456788999999999999999999999887543
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=7.5e-10 Score=121.86 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=134.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
-..+...+..+|+++...+++++|.++|+.++++ ++...++...+|.-|+.-++.+-|+.||++.|++-
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--- 354 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--- 354 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc---
Confidence 3445556666777888888888888888887755 45566677777888888888888888888888762
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
..+ .+.++|+|.|.+..++++-++..|++|+....+ ....+.+|+|||.+....|++.-|.++|+-||.-
T Consensus 355 --~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 355 --AQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred --CCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 223 456889999999999999999999999886532 3446788999999999999999999998887753
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+++...++.|||.+..+.|+.++|..+|..|-..
T Consensus 425 --------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 425 --------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred --------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3556788999999999999999998888877554
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=3.7e-08 Score=109.39 Aligned_cols=263 Identities=17% Similarity=0.072 Sum_probs=168.6
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
...+..++...+++|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|++
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel- 101 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL- 101 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-
Confidence 3456678889999999999999999999999999865 5788889999999999999999999999999887
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------HhCC-C-----
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH--------------------------LTCG-P----- 185 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e--------------------------e~~g-~----- 185 (1060)
.|+.+.+....|.+++++|.+++|+.-|...|.--- ...+ .
T Consensus 102 -------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 102 -------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred -------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 367788888999999999999999998888775310 0000 0
Q ss_pred ---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 001523 186 ---------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 256 (1060)
Q Consensus 186 ---------d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~l 256 (1060)
-.+..+..+...|.||...|+..+|+.-++.+-++. . +....++.++.+++..|+.+.++...
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 011122233334444444555555544444443332 1 12345566677777777777777777
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHhcC--C--CCc--------------------
Q 001523 257 QTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF---------EQQEAARNGT--R--KPD-------------------- 303 (1060)
Q Consensus 257 qkALeI~rkllg~dh~~t~~al~~La~l~~k~~---------e~AeAl~~~~--~--~~d-------------------- 303 (1060)
+++|++ +++|-.-.-.+..|..+..... +..+.+..+. . .+.
T Consensus 247 RECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 247 RECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 777664 5666543333333322111111 1111111000 0 000
Q ss_pred --------hhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 304 --------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 304 --------~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
-.......++-.++|...+.+|.....|+.|+.-|++|+++..+..
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 0001223344567888889999999999999999999998765433
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.06 E-value=7.4e-08 Score=112.71 Aligned_cols=248 Identities=13% Similarity=-0.006 Sum_probs=166.9
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....++..+..|...+..|+++.|++.+.++.+. .+.....+...|.++..+|+++.|..++.++.+..
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--- 148 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--- 148 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 3446777888999999999999999999887654 23344566788999999999999999999987642
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
++. ...+....+.++...|++++|+..+++.++. .|....++..++.+|..+|++++|++++.+.++.
T Consensus 149 --p~~--~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 149 --GND--NILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred --CcC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 122 1223445699999999999999999998874 3444567888999999999999999888776632
Q ss_pred H---------------HHhc----C-----------CCcH----HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 221 N---------------QRLL----G-----------PDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 221 ~---------------eeil----G-----------~dhp----~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
. ...+ . ...+ .....+..+|..+...|++++|...++++++..
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--- 293 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--- 293 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---
Confidence 0 0000 0 0011 134567778899999999999999999998862
Q ss_pred cCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHH--HHHHHHHHHHHHCCCHHHHHHHHHH--H
Q 001523 267 LGPDDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTY--V 341 (1060)
Q Consensus 267 lg~dh~~t~-~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svs--elL~~Lg~~y~~qGqyeEAl~~Yeq--A 341 (1060)
+++.... ..+..+..+..+....+.... +.....++.-. .++..+|.++.++|++++|..+|++ +
T Consensus 294 --pd~~~~~~~~l~~~~~l~~~~~~~~~~~~--------e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 294 --GDDRAISLPLCLPIPRLKPEDNEKLEKLI--------EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred --CCcccchhHHHHHhhhcCCCChHHHHHHH--------HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 3333211 111111111111111111111 11111223333 6777889999999999999999984 5
Q ss_pred HHH
Q 001523 342 AKV 344 (1060)
Q Consensus 342 LkL 344 (1060)
++.
T Consensus 364 ~~~ 366 (409)
T TIGR00540 364 CKE 366 (409)
T ss_pred hhc
Confidence 444
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.06 E-value=5.5e-08 Score=113.48 Aligned_cols=247 Identities=15% Similarity=0.025 Sum_probs=163.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....++..+..|...+..|+|++|++.+.++-+. .+.+ ...+...+.+...+|+++.|..+|.++.+..
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--- 148 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA--- 148 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 3446777888999999999999999777665432 1122 2233444666699999999999999998652
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
++. ........+.++...|++++|+.++++.++. .|....++..++.+|...|++++|++.+.+..+.
T Consensus 149 --~~~--~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 149 --DND--QLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred --Ccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 111 1223334589999999999999999998874 3444577888999999999999999777665532
Q ss_pred H-------------------HHh---------------cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 221 N-------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 221 ~-------------------eei---------------lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
. ... .....+....+...+|..+...|+.++|...++++++.
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---- 292 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---- 292 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 1 000 00011223345667799999999999999999888763
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 267 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 267 lg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
+.++.....+..+ .....+.+.... ....+.++.-.+++..+|.++...|++.+|..+|++++++.+
T Consensus 293 --~~~~~l~~l~~~l---~~~~~~~al~~~--------e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 293 --QYDERLVLLIPRL---KTNNPEQLEKVL--------RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred --CCCHHHHHHHhhc---cCCChHHHHHHH--------HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3345433333322 111111211111 111223445556778888888888888888888888887754
Q ss_pred h
Q 001523 347 N 347 (1060)
Q Consensus 347 k 347 (1060)
.
T Consensus 360 ~ 360 (398)
T PRK10747 360 D 360 (398)
T ss_pred C
Confidence 3
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.04 E-value=1e-07 Score=111.58 Aligned_cols=251 Identities=12% Similarity=0.003 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...++..|..+..+|+++.|..++.++.+.. ++.. ..+....+.++...|++++|+..+++.++..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------- 183 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMA------- 183 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 3445667899999999999999999997542 1111 1234456999999999999999999888762
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------H--------HHhC-----C----------CCCh----hH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------L--------HLTC-----G----------PSHP----NT 190 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei-------~--------ee~~-----g----------~d~p----~~ 190 (1060)
|....++..++.+|...|+|++|++.+.+.++. + .... . ...+ ..
T Consensus 184 -P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 184 -PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred -CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 444567889999999999999999888776632 0 0000 0 0011 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCC
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 270 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~d 270 (1060)
...+..+|..+...|++++|++.++++++.. ++....... ..........++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5677889999999999999999999999865 333221101 11233334457888888888887765 577
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Q 001523 271 DL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 348 (1060)
Q Consensus 271 h~--~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki 348 (1060)
++ ....++.|+.+..+ ..+.+........... ..+.. ..+..+|.++.++|+.++|..+|++++...-.+
T Consensus 332 ~~~~~ll~sLg~l~~~~~-~~~~A~~~le~a~a~~------~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHG-EFIEAADAFKNVAACK------EQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred ChhHHHHHHHHHHHHHcc-cHHHHHHHHHHhHHhh------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 78 77778888875433 3444333322101111 12222 235589999999999999999999998876554
Q ss_pred c
Q 001523 349 Y 349 (1060)
Q Consensus 349 ~ 349 (1060)
.
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 3
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=3.7e-08 Score=109.04 Aligned_cols=252 Identities=13% Similarity=0.032 Sum_probs=183.3
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH--RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~--p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
..++...++.+.+|..|..+|..+.|+++.+..++. ++. .....++..||.-|+..|-++.|+..|....+.
T Consensus 63 ~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 63 QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 345556677888999999999999999987766643 222 234678899999999999999999999887763
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 137 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 137 ~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
- .....++..|-.+|....+|++|++..++...+-.+ .....++..|+.||..+....+++.|+..+.+
T Consensus 137 ~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 137 G--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred h--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 224567888999999999999999999887775322 23566788999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001523 217 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 296 (1060)
Q Consensus 217 ALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~ 296 (1060)
|++.. +...++-..+|.++...|+|+.|++.++.+++. ++..+......|..++...++.++...
T Consensus 206 Alqa~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 206 ALQAD--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHhhC--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99865 444566677999999999999999988887764 444455566666666666666555433
Q ss_pred hcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 297 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 297 ~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
....... .. .-.++...++..-..+.-.+.|..+..+-++-.+++.
T Consensus 271 fL~~~~~----~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 271 FLRRAME----TN---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHH----cc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 2211111 11 1123344555666666777778888877777666544
No 67
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.8e-08 Score=117.45 Aligned_cols=218 Identities=16% Similarity=0.135 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+...-.+|...+...+|+.|++.|..++++. ..+..+.+.|.+|+.+|.|.+.+..+.++++...+...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra- 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA- 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-
Confidence 35566778999999999999999999999884 33457788999999999999999999998876543211
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hC----------------CCCChhHHHHHHHHHHHHHHCC
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL--TC----------------GPSHPNTAATYINVAMMEEGLG 205 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee--~~----------------g~d~p~~a~a~~nLA~iy~~lG 205 (1060)
+.-.++.++..+|..|..+++|+.|+.+|++++.-... .. .--.+..+.-...-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 22236667777889999999999999999998875321 00 0012222333334455555555
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001523 206 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE 285 (1060)
Q Consensus 206 dydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~ 285 (1060)
+|..|+.+|.+|+... |..+..|.|.|.||.++|.+..|+.-.+.++++
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----------------------- 421 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL----------------------- 421 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------------------
Confidence 6666665555555432 344455555555555555555555555555443
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 286 SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 286 ~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
++.+...|..-|.++..+.+|++|++.|++++++..+
T Consensus 422 -------------------------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 422 -------------------------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 3445555666677777778888888888888777643
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=2.5e-08 Score=123.47 Aligned_cols=170 Identities=15% Similarity=0.033 Sum_probs=144.4
Q ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 65 GRQLLESS-KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 65 AraLlelA-~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
++.++..+ .+....|....+...+-+++++.. +++....++.+||.+...+|.+++|+.+++.++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~------ 116 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVR-----RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF------ 116 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH-----hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC------
Confidence 34444433 455566777777777777777654 346778999999999999999999999999999984
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
|+...+..+++.++.+++++++|+..+++++.. .|+.+.+++.+|.++..+|++++|+++|++++..
T Consensus 117 --Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 117 --PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred --CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 667889999999999999999999999999984 5667889999999999999999999999999872
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
++....++..+|.++..+|+.++|...|+++++..
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34556788999999999999999999999999874
No 69
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.99 E-value=2.2e-09 Score=95.85 Aligned_cols=77 Identities=38% Similarity=0.528 Sum_probs=70.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
|+.++.+++++|.+|..+|+|++|+++|++++++ .+..+.+++.++.++.++|.+|..+|++++|+++|++|+++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5778999999999999999999999999999999 6666777788899999999999999999999999999999875
No 70
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.98 E-value=2.7e-09 Score=95.25 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
|+.++.++.++|.+|..+|+|++|+.+|++++++ .+..|.+++.++.++.+||.++..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5778999999999999999999999999999999 66678888889999999999999999999999999999999763
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=8.9e-09 Score=103.70 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001523 85 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 164 (1060)
Q Consensus 85 i~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGd 164 (1060)
..+|++++++ .|. .++.+|.++...|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 3567777765 233 2567899999999999999999999876 35568899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 165 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 165 yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+++|+.+|++++.+ .+....+++++|.++..+|++++|+..|++++.+.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 45567889999999999999999999999999976
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-08 Score=115.35 Aligned_cols=177 Identities=17% Similarity=0.132 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG---- 142 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g---- 142 (1060)
.-+..+.++...|++++|+..-...+++ +...+.+++..|.+++..++.+.|+.+|+++|.+-.....
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 3445688899999999999887777765 4667889999999999999999999999999987422110
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
...+.....+-.-|.-.++.|+|.+|.++|..||.+-.. +....+.+|.++|.++..+|+..+|+.-...|+.|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 012344566677788889999999999999999997322 234467889999999999999999999999999976
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
+.++.+|...|.|+..+++|++|.+.|++|++.-
T Consensus 318 -------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 -------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999999999874
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=5.3e-08 Score=120.58 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=124.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
-..++..++.+|.+...+|.+++|+.+++.++++ .|+...++.++|.++.+++++++|+..+++++..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---- 149 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---- 149 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----
Confidence 3445788999999999999999999999999987 4788899999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.|+.+.+++.+|.++..+|+|++|+++|++++. .++....++..+|.++..+|+.++|...|++|++.
T Consensus 150 ----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 150 ----GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366788999999999999999999999999997 35566789999999999999999999999999997
Q ss_pred H
Q 001523 221 N 221 (1060)
Q Consensus 221 ~ 221 (1060)
.
T Consensus 218 ~ 218 (694)
T PRK15179 218 I 218 (694)
T ss_pred h
Confidence 6
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.92 E-value=3.3e-07 Score=107.03 Aligned_cols=238 Identities=9% Similarity=-0.050 Sum_probs=163.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~-A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
++..+.....+|+++.|..+|.++.+.. +.. .......+.++...|++++|+..++++++.. |
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------P 184 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--------P 184 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------C
Confidence 3344666699999999999999998542 222 2233345899999999999999999998762 4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHh---------------CCCCChhHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLT---------------CGPSHPNTAA 192 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei-------------------~ee~---------------~g~d~p~~a~ 192 (1060)
....++..++.+|...|+|++|++.+.+..+. .... .....+....
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 44677888999999999999999777665532 0000 0001122345
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCH
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 272 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~ 272 (1060)
+...+|..+...|+.++|...++++++. ..++.....+ +. ...++.++++..+++.++. .++++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~~ 328 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDTP 328 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCCH
Confidence 6677899999999999999999999873 2344333222 22 2458999999888877755 47777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 273 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 273 ~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
....++..+....+. ...++......... .++. ..+..++.++.++|+.++|..+|++++.+..+
T Consensus 329 ~l~l~lgrl~~~~~~-~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 329 LLWSTLGQLLMKHGE-WQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 776666666554433 33333332222111 1222 34568999999999999999999999987643
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=3.6e-07 Score=109.78 Aligned_cols=158 Identities=17% Similarity=0.045 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
..++++.||..|...|++++|++++++|++.. |.....|...|.+|...|++.+|..+++.|..+ +
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L------D 258 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL------D 258 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC------C
Confidence 46788999999999999999999999999854 566788999999999999999999999888765 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchhhhhcCCCc-H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Q 001523 270 DDLRTQDAAAWLEYFESKAFEQQEAARN-GTRKPDASIASKGHLS-V--SDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 345 (1060)
Q Consensus 270 dh~~t~~al~~La~l~~k~~e~AeAl~~-~~~~~d~~~a~~~~~s-v--selL~~Lg~~y~~qGqyeEAl~~YeqALkL~ 345 (1060)
...+.+.....-.++..+..+.++.+.. .+.... ....... + .......|.+|.++|++..|+..|..+.+.+
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV---DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1223333333333444444555444332 121111 1111111 2 2223446899999999999999999999999
Q ss_pred hhhcCCCCCCCCCCcchhh
Q 001523 346 GNFYQDNNLTSPDGSSKEV 364 (1060)
Q Consensus 346 ~ki~~~~n~~~~~ia~ke~ 364 (1060)
..+..+.=..|.+-..+.+
T Consensus 336 ~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 336 DDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred HHHhcccccHHHHHHhhcc
Confidence 9999888888877555543
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=3e-08 Score=99.87 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCC
Q 001523 127 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 206 (1060)
Q Consensus 127 le~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGd 206 (1060)
..+|++++++. |.. +..+|.++..+|++++|+.+|++++.+ .|....+++++|.++..+|+
T Consensus 13 ~~~~~~al~~~--------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSVD--------PET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHcC--------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 45677777762 332 567899999999999999999999884 46668899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001523 207 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 280 (1060)
Q Consensus 207 ydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~ 280 (1060)
+++|+.+|++++.+. +....+++++|.++..+|++++|+..|++++++ .++++.....+..
T Consensus 74 ~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~p~~~~~~~~~~~ 134 (144)
T PRK15359 74 YTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----SYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHH
Confidence 999999999999864 445678999999999999999999999999987 5777666544443
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9.5e-08 Score=111.50 Aligned_cols=183 Identities=21% Similarity=0.206 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--h
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--E 140 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek--~ 140 (1060)
.+.-.+...+-.|+..|.+.+.+..+..+++...... .+...++.++..+|..|..+++|+.|+.+|+++|.-.+. .
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 4445566678888888888888888888887654332 223456778888999999999999999999999875432 0
Q ss_pred c----------------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC
Q 001523 141 L----------------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 204 (1060)
Q Consensus 141 ~----------------g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l 204 (1060)
. ..-.+..+.-...-|..++..|+|..|+.+|.+|+.. .|.....|.|.|.||..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 0 0123344555667799999999999999999999883 577899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 205 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 205 GdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
|.+..|+...++++++ ++.....|..-|.++..+.+|++|++.|+++++.
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999986 3677889999999999999999999999999886
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-08 Score=113.29 Aligned_cols=254 Identities=16% Similarity=0.060 Sum_probs=177.2
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE- 140 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~- 140 (1060)
..++.....+|..++.+.+|.+|+..|..|++++ |..+..|.+.+.+|+..|+|++|+..+++.+++-...
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~ 117 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS 117 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc
Confidence 4467788889999999999999999999999884 4558889999999999999999998887776541000
Q ss_pred ----------------------c-------------------C--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 141 ----------------------L-------------------G--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 141 ----------------------~-------------------g--~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
+ . .+.|....+...-+.|+..++++++|+...-..++
T Consensus 118 k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 118 KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 0 0 00022233333445555566666666555444444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHHHhcCC
Q 001523 178 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI---------QTAASYHAIAIALSLMEA 248 (1060)
Q Consensus 178 i~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp---------~~a~a~~nLA~ly~~lGd 248 (1060)
+ +.....+++.-|.+++..++.+.|+.+|+++|.+. ++|. .....+..-|.-.++.|+
T Consensus 198 l--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-----pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 198 L--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred c--------ccchhHHHHhcccccccccchHHHHHHHhhhhccC-----hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 2 34456677788999999999999999999999865 4433 334455566777889999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHH
Q 001523 249 YPLSVQHEQTTLQILRAKLGPDDLRT-QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT 327 (1060)
Q Consensus 249 yeEAie~lqkALeI~rkllg~dh~~t-~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~ 327 (1060)
|.+|.+.|..+|.+ ++++..+ ..++.+.+......+...+++.... ............|...|.+|..
T Consensus 265 y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~------~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 265 YRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCN------EALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhh------hhhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999987 4554433 2334444444444444444443221 1122234567889999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 001523 328 KGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 328 qGqyeEAl~~YeqALkL~~k 347 (1060)
++++++|++.|++++++...
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 99999999999999997665
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=2.9e-08 Score=101.77 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeil 225 (1060)
...+.+++++|.++..+|++++|+.+|++++.+. .++.....++.++|.+|..+|++++|+.+|++++.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3467889999999999999999999999999863 2334456789999999999999999999999999874221
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 282 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La 282 (1060)
+..+...+.++.++|..+..+|++++|+.++++++..+++.++.++........++.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 111233444555555555599999999999999999999998888766655555554
No 80
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.87 E-value=1.5e-07 Score=100.04 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+..+|..|..++..|+|.+|+..|++++..+ +.++....+.+.+|.+++..|+|++|+..|++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998775 6678889999999999999999999999999999875 6
Q ss_pred CChhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhCC---------CCChhHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCG---------PSHPNTAATYINVAMMEEG 203 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lG-----------dyeeAleyyekALei~ee~~g---------~d~p~~a~a~~nLA~iy~~ 203 (1060)
.++....+++.+|.+++.+. ...+|+..|+..+..+-..-- .-...++.--+.+|..|..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999877653 234677777776665311000 0011123334668999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHH
Q 001523 204 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 253 (1060)
Q Consensus 204 lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAi 253 (1060)
.|.|..|+..++.+++.+ ++.+....++..|+.+|..+|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999987 666777889999999999999988553
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.87 E-value=1.6e-06 Score=106.15 Aligned_cols=253 Identities=15% Similarity=0.121 Sum_probs=163.2
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
+..+... ..+..++....++|++.+|+-+|.+|+++ .|......+..+.+|..+|++..|+..|++++.+
T Consensus 201 HL~p~d~--e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 201 HLNPKDY--ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred hcCCCCh--HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 3444444 56777788888999999999999999876 3556778888888999999999999988888776
Q ss_pred HHHh--------------------------------cC-CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 001523 137 NERE--------------------------------LG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY------ 177 (1060)
Q Consensus 137 ~ek~--------------------------------~g-~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe------ 177 (1060)
.-.. .. .........++.++.+|.....++.|+.+......
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 3200 00 00000112233445555555555555544433322
Q ss_pred ----------------HHH-------------H---hCC----------------C--CChhHHHHHHHHHHHHHHCCCH
Q 001523 178 ----------------LLH-------------L---TCG----------------P--SHPNTAATYINVAMMEEGLGNV 207 (1060)
Q Consensus 178 ----------------i~e-------------e---~~g----------------~--d~p~~a~a~~nLA~iy~~lGdy 207 (1060)
++. . +.. . ...+....++.++.+|...|+|
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 000 0 000 0 0122346688899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 001523 208 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 287 (1060)
Q Consensus 208 dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k 287 (1060)
.+|+.+|-.+...- ....+..|+.+|.||..+|.+++|+++|.+++.+ .+++.+ ++..|+.++++
T Consensus 431 ~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D---~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 431 KEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDNLD---ARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCchh---hhhhHHHHHHh
Confidence 99999998876532 2233678999999999999999999999999987 466654 45555556666
Q ss_pred HHHHHHHHHhcCCC--Cch-hhhhcCCCcHHHHHHHHHHHHHHCCCHHHH
Q 001523 288 AFEQQEAARNGTRK--PDA-SIASKGHLSVSDLLDYINPSHDTKGRNVST 334 (1060)
Q Consensus 288 ~~e~AeAl~~~~~~--~d~-~~a~~~~~svselL~~Lg~~y~~qGqyeEA 334 (1060)
++...+++...... ++. ............++.....+|...|+.++=
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 66666665543331 121 112222334556777888899999998873
No 82
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=4.4e-08 Score=100.43 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=104.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
...|..+...+...++. ......+.+++.+|.++..+|++++|+.+|++++.+. .++.....++.++|.
T Consensus 12 ~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~ 80 (168)
T CHL00033 12 DKTFTIVADILLRILPT------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGL 80 (168)
T ss_pred ccccccchhhhhHhccC------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHH
Confidence 34455555555444322 2234567889999999999999999999999999873 234446678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 232 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~ 232 (1060)
+|..+|++++|+.+|++++.+.... ...+...+.++.++|..+..+|++++|+.++.+++.++++..+.++...
T Consensus 81 ~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 81 IHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999862211 0112223344444555555999999999999999999988877766443
No 83
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.85 E-value=9e-07 Score=114.34 Aligned_cols=171 Identities=11% Similarity=-0.017 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
+...+..+...|...|++++|+.+|.+..+. .-.|+ ..+|..|...|...|++++|.+.|.+...... +
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~---g- 574 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETH---P- 574 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC---C-
Confidence 3445555566677777777777777665432 11122 34666667777777777777777666544210 0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
-.++ ..+|+.|..+|.+.|++++|+++|+++.+. +......+|..|...|.+.|++++|+++|++..+..
T Consensus 575 i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-- 644 (1060)
T PLN03218 575 IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-- 644 (1060)
T ss_pred CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Confidence 1121 345666667777777777777777665542 111123456666667777777777777776655421
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
-.++ ..+|..|...|.+.|++++|.+++++..
T Consensus 645 ----v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 645 ----VKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred ----CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1111 2345556666666777777766666554
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=1.6e-07 Score=99.76 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 001523 120 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 199 (1060)
Q Consensus 120 lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~ 199 (1060)
.++.++++..++++++. .|.....|..||.+|..+|++++|+.+|++++.+ .+....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778888888888876 3556778999999999999999999999999885 3445677888898
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 200 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 200 iy-~~lGd--ydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
++ ...|+ +++|++++++++++. +....++.+||.++..+|+|++|+.++++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 64 67777 589999999998865 3445678889999999999999999999988773
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=7.2e-08 Score=102.35 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=103.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
.++.++++..++++++. .|....+|..||.+|..+|++++|+..|++|+.+. ++...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 56667888888888765 57778899999999999999999999999999973 456788999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 158 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 158 lY-~~lGd--yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
++ ...|+ +++|++.+++++++ ++....++++||.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999995 45557889999999999999999999999999876
No 86
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.84 E-value=8.9e-07 Score=114.41 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
.+...+..+...|...|++++|.++|.+...... .-.++ ..+|..|...|...|++++|+++|++..+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------ 608 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------ 608 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------
Confidence 3456777788999999999999999998875311 11232 457888889999999999999999987653
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
+......+|+.+...|.+.|++++|+++|++..+. | -.++ ..+|..|...|...|++++|+++|++..+..
T Consensus 609 -gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G- 679 (1060)
T PLN03218 609 -NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQG- 679 (1060)
T ss_pred -CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-
Confidence 11224567999999999999999999999987763 1 1233 4578889999999999999999999987532
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La--~l~~k~~e~AeAl~~~~~ 300 (1060)
......+|..|..+|.+.|++++|.++|++.... -+.++ ..+ +..|. ++..+..+.+..+.....
T Consensus 680 ------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vvt---yN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 680 ------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VST---MNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred ------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HHH---HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1112457888999999999999999999876432 11222 222 22232 333333444333322111
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 301 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 301 ~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
.....++ ..+|..+-..|.+.|++++|..++.+.++.
T Consensus 747 ------~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 747 ------RLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred ------HcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0111122 345666668899999999999999888663
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.83 E-value=8.2e-07 Score=97.31 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
..+..+|..|..++..|+|++|+..|++++... +..+....+.+.||.+|+.+++|++|+.++++.++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----- 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----- 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----
Confidence 357779999999999999999999999998764 5567777889999999999999999999999999985
Q ss_pred CCChhHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhC---------CCCChhHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTC---------GPSHPNTAATYI 195 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lG---------------d---yeeAleyyekALei~ee~~---------g~d~p~~a~a~~ 195 (1060)
++++....+++.+|.++..++ + ..+|+..|++.++.+-..- ..-...++.--+
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999998875554 1 2456666766665421100 000112233445
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 196 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 196 nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
.+|..|.+.|+|.-|+.-++.+++-+ ++.+....++..|+..|..+|..++|..+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 78899999999999999999999877 5667788899999999999999999987654
No 88
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.82 E-value=2.9e-07 Score=108.89 Aligned_cols=201 Identities=15% Similarity=0.033 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
.++|+.-+.+.+.+++.++|+.+++++|+.+ |.....|..+|+++..+++.+.|.+.|...+..
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-------- 714 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-------- 714 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------
Confidence 3455555555555555555555555555543 334455555555555555555555555555442
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
-|...-.+..|+.+-...|+.-+|...+.++.-- +|.....|...-.+-.+.|..+.|...+.+||+-+
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--- 783 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--- 783 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 1333344555555555555555555555554331 12233344444444556666666666666666654
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 267 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 267 lg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
+.....+....+|.-.-+.......|+..... -..++..+|.++....++++|..+|.+++++.+
T Consensus 784 --p~sg~LWaEaI~le~~~~rkTks~DALkkce~-------------dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 784 --PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-------------DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred --CccchhHHHHHHhccCcccchHHHHHHHhccC-------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 23233333333333222222222223322221 123577889999999999999999999999988
Q ss_pred hhc
Q 001523 347 NFY 349 (1060)
Q Consensus 347 ki~ 349 (1060)
.++
T Consensus 849 d~G 851 (913)
T KOG0495|consen 849 DNG 851 (913)
T ss_pred ccc
Confidence 755
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=1.2e-06 Score=105.74 Aligned_cols=250 Identities=18% Similarity=0.097 Sum_probs=173.8
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
+..+-.++|.++.-|..+++.+.|.++.++++++- ....+.+|..||.++...+++.+|+....-+++-+...
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 44445788999999999999999999999999872 13456799999999999999999999999998876442
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------------------
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH---------------------------------------- 180 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e---------------------------------------- 180 (1060)
++. +..-..+-...++.++|+..+...|.+++
T Consensus 547 ~~l--------~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVL--------MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhh--------chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 111 11111122223444444444444433333
Q ss_pred ---HhC----------------CCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001523 181 ---LTC----------------GPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 239 (1060)
Q Consensus 181 ---e~~----------------g~d~p--~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nL 239 (1060)
... ++++. .....+...|..+...++.++|.-++.+|-.+. +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 100 01111 112345567888888999999999999998876 5567889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCchhhhhcCCCcHHHH
Q 001523 240 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHLSVSDL 317 (1060)
Q Consensus 240 A~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeA--l~~~~~~~d~~~a~~~~~svsel 317 (1060)
|.++..+|++.+|.+.|..|+.+ +++|.....+++.+..-.. ....++. +... .-.-.+...++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle~G-~~~la~~~~~L~d--------alr~dp~n~ea 756 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLELG-SPRLAEKRSLLSD--------ALRLDPLNHEA 756 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHH--------HHhhCCCCHHH
Confidence 99999999999999999999987 7888877666554432221 1111111 1111 11223456688
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 318 LDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 318 L~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
|+++|.++.++|+.++|..+|.-|+++..+
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998765
No 90
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=1.8e-06 Score=98.34 Aligned_cols=172 Identities=9% Similarity=0.128 Sum_probs=135.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001523 74 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKSY 152 (1060)
Q Consensus 74 ~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG-dyeeAle~yqKALeL~ek~~g~d~p~~a~ay 152 (1060)
++...+++++|+..+.++|++ .|....++...+.++..+| ++++|+.++.+++.. .+....++
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW 109 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIW 109 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHh
Confidence 355678999999999999977 4777889999999999998 689999999999886 34556789
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001523 153 GDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 230 (1060)
Q Consensus 153 ~nLA~lY~~lGdy--eeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp 230 (1060)
+..+.++..+|+. ++++.++.+++++ ++....++...+.++..+|++++|++++.++|++. +
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~ 173 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------V 173 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------C
Confidence 9999999888874 7889999999874 46667899999999999999999999999999864 3
Q ss_pred HHHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 001523 231 QTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 282 (1060)
Q Consensus 231 ~~a~a~~nLA~ly~~l---Gdy----eEAie~lqkALeI~rkllg~dh~~t~~al~~La 282 (1060)
....+++..+.++..+ |.+ ++++.+..+++.+ .+++...+..+.++.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGLF 227 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHH
Confidence 3356777777777665 333 3677777777776 466666665555553
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=1.9e-06 Score=108.77 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 70 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
.++.++...|++++|+.++++++. ..+.....+..+|.+|..+|+|++|+.+|+++++.. |...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~--------p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~ 136 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS--------SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNP 136 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCH
Confidence 666777777888888888888871 123334555566888888899999999999888762 3335
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.++..++.+|...+++++|++.+++++.. .+. ...+..++.++..+++..+|++.|+++++..
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAER--------DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhccc--------Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 55667788888899999999888888764 222 2223455666666777777999998888764
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.75 E-value=1.5e-06 Score=109.63 Aligned_cols=174 Identities=10% Similarity=0.063 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+...+..+.+.+++|+++.|+..|+++++. .|....+...++.++...|++++|+.++++++. +
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------S 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------C
Confidence 4557889999999999999999999999976 344432333888888889999999999999982 1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
.+.....+..+|.+|..+|+|++|+++|+++++. .|....++..|+.+|...++.++|++.+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 1223455666688999999999999999999985 33335666788999999999999999999988754
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 275 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~ 275 (1060)
+. ...+..++.++..++++.+|++.|+++++. .++.....
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~~ 206 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEVL 206 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 22 222344566666678887799999999887 46655543
No 93
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.3e-07 Score=90.58 Aligned_cols=103 Identities=23% Similarity=0.227 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 103 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 103 ~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
+|....++..+|.++...|++++|+.++++++.+. +....++.++|.+|..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 46667889999999999999999999999998862 445778999999999999999999999999884
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 183 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 183 ~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.+.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34457788999999999999999999999999875
No 94
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=8.9e-08 Score=105.58 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=105.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....|+.|-..|.-++..++|++|+..|.+||++ .|..+..|.+.|.+|.++|.|+.|++.++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4456888888999999999999999999999977 5788899999999999999999999999999997
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 208 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdyd 208 (1060)
++...++|..||.+|..+|+|++|++.|++||++ +|+......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999996 2333344555555555444443
No 95
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.74 E-value=5.8e-07 Score=92.69 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=88.0
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
........+..++.+|..+...|++++|+.+|++++.+.. +......++..+|.+|..+|++++|+.+|++++.+
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445566788899999999999999999999999998742 23345678999999999999999999999999987
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhC
Q 001523 137 NERELGLDHPDTMKSYGDLAVFYYRLQH-------TELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 137 ~ek~~g~d~p~~a~ay~nLA~lY~~lGd-------yeeAleyyekALei~ee~~ 183 (1060)
. +.....+..+|.+|..+|+ +++|+.+|+++++.+.+..
T Consensus 102 ~--------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 102 N--------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred C--------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3 3346677788888887766 4555555555555544433
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=4.3e-07 Score=113.96 Aligned_cols=223 Identities=6% Similarity=-0.043 Sum_probs=160.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 99 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 99 lg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.+...+....++..|..+|...+++++|+..++.+++. +|.....|+.+|.+|...+++.+|.-. .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34677888999999999999999999999999988875 466788899999999999999888766 55554
Q ss_pred HHHhCC-----------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Q 001523 179 LHLTCG-----------PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 247 (1060)
Q Consensus 179 ~ee~~g-----------~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lG 247 (1060)
+..... .+....-.+++.||.||..+|++++|...|++++++. +..+.++.++|..|..+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 322100 0123333688999999999999999999999999975 45577899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH
Q 001523 248 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 325 (1060)
Q Consensus 248 dyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k--~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y 325 (1060)
++++|++++.+|+..+-..- ..... .-.|..++... .++....+...... ......+.+++.-|-..|
T Consensus 164 dL~KA~~m~~KAV~~~i~~k--q~~~~--~e~W~k~~~~~~~d~d~f~~i~~ki~~------~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKK--QYVGI--EEIWSKLVHYNSDDFDFFLRIERKVLG------HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhh--cchHH--HHHHHHHHhcCcccchHHHHHHHHHHh------hhccchhHHHHHHHHHHH
Confidence 99999999999999864331 11111 12233333221 11121111110000 001224566777788889
Q ss_pred HHCCCHHHHHHHHHHHHHHhhhhcC
Q 001523 326 DTKGRNVSTLKRKTYVAKVKGNFYQ 350 (1060)
Q Consensus 326 ~~qGqyeEAl~~YeqALkL~~ki~~ 350 (1060)
...+++++++.+++.+|++..+...
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchh
Confidence 9999999999999999999887544
No 97
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.69 E-value=8.9e-07 Score=110.37 Aligned_cols=196 Identities=13% Similarity=0.008 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p 188 (1060)
++..|...|.+.|++++|...|++..+ . ...+|+.|...|.+.|++++|+++|++.++. | -.|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~P 424 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAP 424 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCC
Confidence 344444555555555555554443321 1 1234666666666666666666666665442 1 112
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcC
Q 001523 189 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg 268 (1060)
+ ..++..+-..+...|++++|.++|+...+.. + -.+ ....|..+..+|.+.|++++|.+.+++. .-
T Consensus 425 d-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~~ 490 (697)
T PLN03081 425 N-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----R-IKP-RAMHYACMIELLGREGLLDEAYAMIRRA-------PF 490 (697)
T ss_pred C-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----C-CCC-CccchHhHHHHHHhcCCHHHHHHHHHHC-------CC
Confidence 2 3345556666666677777766666655421 1 111 1234566677777777777777766532 11
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 269 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 269 ~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
..+..++.++... +...+..+.++......... .+.....|..|..+|.+.|++++|.+.+++..+.
T Consensus 491 ~p~~~~~~~Ll~a-~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 491 KPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCHHHHHHHHHH-HHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 1122222222211 11222223222222211111 1122345788899999999999999999775543
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=1.1e-06 Score=88.16 Aligned_cols=136 Identities=21% Similarity=0.134 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+...|..+...+..++...+...+.+.+.-. ++.+....+...+|.+++..|+|++|+..|++++... .
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 35566777777778999999888777776542 4455667889999999999999999999999998852 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekAL 218 (1060)
+......+...||.++..+|+|++|+..++... ........+..+|.+|..+|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 334456678899999999999999999986521 233455677889999999999999999999875
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=7.5e-07 Score=91.88 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=99.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
.+..+.+++++|.+|...|++++|+.+|++++.+.. +......++.++|.+|..+|++++|+.+|++++.+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--- 102 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 455678899999999999999999999999998632 233346789999999999999999999999999864
Q ss_pred cCCCcHHHHHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLM-------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 283 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~l-------GdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~ 283 (1060)
+.....+..+|.+|..+ ++++.|+..|+++++.+++.+..++..+..+..|+..
T Consensus 103 -----p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 -----PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred -----cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 22345566667777665 5578888888888888888777666666666666643
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.2e-05 Score=92.91 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN-------- 137 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~-------- 137 (1060)
...|+.|.|+++++..++|+..+.- + ++....++...|.+++++|+|++|+..|+..++-.
T Consensus 80 ~~~fEKAYc~Yrlnk~Dealk~~~~-~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 80 SFFFEKAYCEYRLNKLDEALKTLKG-L----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred hhhHHHHHHHHHcccHHHHHHHHhc-c----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 3347999999999999999998872 1 11223467778999999999999999998874321
Q ss_pred ---------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC-------hhHHHHHH
Q 001523 138 ---------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYI 195 (1060)
Q Consensus 138 ---------------ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~-------p~~a~a~~ 195 (1060)
.+............++|.|.++...|+|.+|++.+++|+.++.+.+..++ ..+..+..
T Consensus 149 r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 149 RANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 01111122335678899999999999999999999999999887654332 22456778
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001523 196 NVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 241 (1060)
Q Consensus 196 nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ 241 (1060)
.|+.++..+|+.++|...|...+... ..+.+..+.+-+||-.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhh
Confidence 89999999999999999999887753 2344445555555443
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=5.4e-07 Score=97.88 Aligned_cols=167 Identities=14% Similarity=0.090 Sum_probs=135.2
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
....+.+... +.++..+...|+-+.+..+..+++. .++.....+..+|......|+|.+|+..++++..+
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l- 129 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL- 129 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-
Confidence 3344444445 7788899999999999888887653 23444556666999999999999999999999886
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
.|..+.+++.+|.+|.+.|++++|..-|.+++++.. ....++.|||..|...|+++.|..++..+
T Consensus 130 -------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 130 -------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--------NEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred -------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------CCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 355688999999999999999999999999999742 22467899999999999999999999988
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
.... .....+..||+.+...+|++.+|.....
T Consensus 195 ~l~~--------~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 195 YLSP--------AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HhCC--------CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6532 2234577899999999999999977544
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3.1e-07 Score=89.67 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
+|....++..+|.++...|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 3455677899999999999999999999998884 34456888999999999999999999999998864
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+.....++.+|.+|...|++++|+.+|++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334667888999999999999999999999987
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=1.2e-06 Score=104.16 Aligned_cols=243 Identities=11% Similarity=0.090 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..+|..+.-++..++|...++..++.|.. .+.-...+...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 45777888888999999999999988863 3455667888999999999999999999999874 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeil 225 (1060)
+.-.-+|..+|.++....+|++|+++|+.|+.+ .++...++..|+.+..++++|+-..+.-.+.+++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 233457889999999999999999999999995 34557889999999999999999888888777765
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 305 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~ 305 (1060)
+.....|..+|..+...|++..|...++...+...............++..-.....+.+..+.++...... ...
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-e~~ 214 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-EKQ 214 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-hhH
Confidence 455667888999999999999999988766655432211111111122211122222233333333221111 001
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 306 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 306 ~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
+. +-.......+.++..++++++|...|...+...+
T Consensus 215 i~-----Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 215 IV-----DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HH-----HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 11 1112334567788889999999988877665444
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.9e-06 Score=97.96 Aligned_cols=215 Identities=15% Similarity=0.083 Sum_probs=140.6
Q ss_pred cccCCCCchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 19 HKVPNYDKKDGTSFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 98 (1060)
Q Consensus 19 ~k~~n~~~aea~~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~eki 98 (1060)
...++++..+++..|...+.+-..+...-.+.. .....+...+.-++--+..++...+|..|+.+..++++.
T Consensus 258 ~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~----~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---- 329 (564)
T KOG1174|consen 258 TLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD----YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS---- 329 (564)
T ss_pred HhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH----HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc----
Confidence 444666777777777776665443222111100 001111222344555566777888888888888888865
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 99 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 99 lg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.+....++...|.++..+++.++|+-.|+.|..+. |....+|..|-.+|...|++.+|.-....++..
T Consensus 330 ----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 330 ----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred ----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 34556688888888888888888888888888764 456778888888888888888888777766665
Q ss_pred HHH------hCC----------------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001523 179 LHL------TCG----------------------PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 230 (1060)
Q Consensus 179 ~ee------~~g----------------------~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp 230 (1060)
+.. +.| ...|....+-..+|.++...|++.+++.+++++|..+. +
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D-- 470 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----D-- 470 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----c--
Confidence 322 011 01344455566677777777777777777777776551 1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 231 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 231 ~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
...+..||.++...+.+++|..+|..||.+
T Consensus 471 --~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 471 --VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 123456777777777777777777777765
No 105
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=2.6e-06 Score=96.98 Aligned_cols=172 Identities=10% Similarity=0.076 Sum_probs=133.9
Q ss_pred hcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKAL 134 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qG-dyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdy--eeAle~yqKAL 134 (1060)
+........++..++.++..+| ++++|+.++.++++. ++....+|++.+.++..+|+. ++++.++.+++
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 3444555667778888998888 689999999999965 467778899999999999874 77888888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC---CCH----
Q 001523 135 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNV---- 207 (1060)
Q Consensus 135 eL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l---Gdy---- 207 (1060)
++ ++....++...+.++..+|+|++|++++.+++++ ++....+++..+.++..+ |.+
T Consensus 136 ~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 136 SL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred Hh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccH
Confidence 76 3567889999999999999999999999999985 344567888888887766 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 001523 208 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 208 dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~----lGdyeEAie~lqkALe 261 (1060)
++++++..+++.+. |....+++.++.++.. +++..+|...+.++++
T Consensus 200 e~el~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 200 DSELKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 47888888888765 3445667778888877 4556677777766554
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.65 E-value=4.4e-07 Score=85.60 Aligned_cols=103 Identities=12% Similarity=0.079 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
.+++.+|..+...|++++|+++|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 468899999999999999999999998752 2344456788999999999999999999999999865 444
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 230 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+....++..+|.++..+|++++|+.+++++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555677899999999999999999999999887
No 107
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.65 E-value=1.2e-06 Score=109.18 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.+..+...|...|++++|..+|.+.. .....+|+.|...|...|++++|+.+|++..+. + -.+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~p 323 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSI 323 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC
Confidence 34445678888888888888887542 123457888888888899999988888876542 1 112
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG 226 (1060)
...+|..+..+|...|++++|.+.+..+++. + ......++..|..+|.+.|++++|.+.|++..+
T Consensus 324 -d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------- 388 (697)
T PLN03081 324 -DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------- 388 (697)
T ss_pred -CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------
Confidence 2346777888888888888888888777653 1 112234566777777778888888777776432
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 227 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 227 ~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+ ...+|..|...|.+.|+.++|+++|++..+
T Consensus 389 ~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 389 K----NLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 123566677777777777777777776543
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.3e-05 Score=92.73 Aligned_cols=283 Identities=14% Similarity=0.026 Sum_probs=169.4
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHhcCCCChhHHHHHHHHHHHHH
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKL-----------------------VAVCGPYHRMTAGAYSLLAVVLY 118 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~-----------------------ekilg~d~p~~A~A~~~LA~ly~ 118 (1060)
..+-..+...|.+++.+|+|++|+..|+..++-. .+............+++.|.++.
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI 186 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 3334466678999999999999999999874420 01111122335678999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDH-------PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL---------- 181 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~-------p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee---------- 181 (1060)
..|+|.+|++.+++|++++++.+..++ .++..+...|+.++..+|+.++|...|...+.....
T Consensus 187 ~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~N 266 (652)
T KOG2376|consen 187 ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVN 266 (652)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhc
Confidence 999999999999999999877654332 135667889999999999999999999887764110
Q ss_pred ----hCC-----C----------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHH----------------
Q 001523 182 ----TCG-----P----------------------SHPNTAATYINVAMMEEGLGNVHVALRYL---------------- 214 (1060)
Q Consensus 182 ----~~g-----~----------------------d~p~~a~a~~nLA~iy~~lGdydEAie~y---------------- 214 (1060)
..+ . .+...-.++.|.+.+.+..+..+.+.+..
T Consensus 267 NLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll 346 (652)
T KOG2376|consen 267 NLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL 346 (652)
T ss_pred chhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH
Confidence 000 0 01111234455555555555544444332
Q ss_pred -----------HHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Q 001523 215 -----------HKALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP--DDLRTQDAAAW 280 (1060)
Q Consensus 215 -----------ekALei~eeilG~dhp~-~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~--dh~~t~~al~~ 280 (1060)
.++.+...... ..|+. ...+.+.++.+...+|+++.|++.+...+......+.. ..|.+..+...
T Consensus 347 ~~~t~~~~~~~~ka~e~L~~~~-~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~ 425 (652)
T KOG2376|consen 347 QEATKVREKKHKKAIELLLQFA-DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVA 425 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHH
Confidence 11222221111 12232 24566778888999999999999988665444333322 23444333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 281 LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 281 La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
|.+- .+....+.+....+.. ...........+..++..++....+.|+-++|...|++.++....
T Consensus 426 l~~~-~~~~~~a~~vl~~Ai~-~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 426 LYYK-IKDNDSASAVLDSAIK-WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred HHHh-ccCCccHHHHHHHHHH-HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 3222 1111111111110000 000011112345566777777778889999999999999886654
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=7e-07 Score=91.25 Aligned_cols=102 Identities=15% Similarity=0.020 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
.......+.+|..++..|++++|+..|+-+..+ ++.....+++||.++..+|+|++|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 567788999999999999999999999988776 3667889999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.++....++++|.||...|+.+.|++.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 24456889999999999999999999999999987
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=7.1e-07 Score=91.19 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
..+-..+|.+|..++..|++++|+.+|+-+..+ ++.....|++||.++..+|+|.+|+..|.+|+.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---- 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---- 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence 566778999999999999999999999988765 57889999999999999999999999999999872
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
++....+.++|.||+.+|+.+.|++.|+.++.++
T Consensus 100 ----~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 ----IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4457789999999999999999999999999987
No 111
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.62 E-value=4.1e-07 Score=104.92 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.|+..|..++..|+|++|+.+|.+|+++ .+....+++++|.+|..+|++++|+.++++|+.+. +
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------P 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c
Confidence 3667899999999999999999999976 35667899999999999999999999999999973 4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
....+|+.+|.+|+.+|+|++|+.+|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999986
No 112
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=6.4e-07 Score=84.47 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 187 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~ 187 (1060)
.+++.+|..+...|++++|+.+|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 578899999999999999999999998753 3444456788999999999999999999999999752 344
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 188 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 188 p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+....++..+|.++..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4456778999999999999999999999999875
No 113
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.7e-07 Score=101.91 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
...+.-+..-|.-++..++|++|+..|.+||++ .|..+..|+|.|.+|.++|.|+.|++-++.|+.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345667778899999999999999999999997 3556788999999999999999999999999995
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChh
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 250 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdye 250 (1060)
++....+|..||.+|..+|++++|++.|++||++. ++.. ....+|..+-.++++-.
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~Ne---~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDNE---SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCcH---HHHHHHHHHHHHhcCCC
Confidence 67789999999999999999999999999999976 3333 33444554444444433
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2.1e-06 Score=107.84 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=165.8
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
..+.....++..++..+...+++++|++++..+++. .|....+|+.+|.+|...+++++|... .++.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 345566778888999999999999999999988855 577888999999999999999888776 6655543
Q ss_pred Hhc-----------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCH
Q 001523 139 REL-----------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 207 (1060)
Q Consensus 139 k~~-----------g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdy 207 (1060)
... -.+.+..-.+++.||.||..+|++++|...|++++++ ++..+.+++++|..|... ++
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 211 0112233468899999999999999999999999995 366788999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhcC---------------CCcH-----------------HHHHHHHHHHHHHHhcCChhHHHHH
Q 001523 208 HVALRYLHKALKCNQRLLG---------------PDHI-----------------QTAASYHAIAIALSLMEAYPLSVQH 255 (1060)
Q Consensus 208 dEAie~yekALei~eeilG---------------~dhp-----------------~~a~a~~nLA~ly~~lGdyeEAie~ 255 (1060)
++|++++.+|+..+-..-. .+.. .....+.-|=.+|...++|++++.+
T Consensus 166 ~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 166 EKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999886532100 0000 0112222333677778888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHH
Q 001523 256 EQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTL 335 (1060)
Q Consensus 256 lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl 335 (1060)
++.+|++. +.+ ..++..|+.++.+.+ .+|..+.+.+ .+..+-.....+..|+
T Consensus 246 LK~iL~~~-----~~n---~~a~~~l~~~y~~kY-------------------~~~~~~ee~l-~~s~l~~~~~~~~~~i 297 (906)
T PRK14720 246 LKKILEHD-----NKN---NKAREELIRFYKEKY-------------------KDHSLLEDYL-KMSDIGNNRKPVKDCI 297 (906)
T ss_pred HHHHHhcC-----Ccc---hhhHHHHHHHHHHHc-------------------cCcchHHHHH-HHhccccCCccHHHHH
Confidence 88887762 222 122333333332211 1123333333 3333334446778899
Q ss_pred HHHHHHHHHhhh
Q 001523 336 KRKTYVAKVKGN 347 (1060)
Q Consensus 336 ~~YeqALkL~~k 347 (1060)
..|++.+.+...
T Consensus 298 ~~fek~i~f~~G 309 (906)
T PRK14720 298 ADFEKNIVFDTG 309 (906)
T ss_pred HHHHHHeeecCC
Confidence 999888877554
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=3.1e-06 Score=84.97 Aligned_cols=123 Identities=18% Similarity=0.095 Sum_probs=98.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 198 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA 198 (1060)
..++...+...+++.+.-. ++.+....+...+|.+++..|++++|+..|++++... .+......+.+.||
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 5788888877777666542 4455667888999999999999999999999998842 23344566788999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 199 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 199 ~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
.++..+|++++|+..++.. .........+..+|.+|..+|++++|...|++||
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999652 2234455677789999999999999999999875
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.1e-05 Score=94.14 Aligned_cols=171 Identities=16% Similarity=0.098 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
......|..|..++..|++++|+..++..+.. .|+....+...+.++...++..+|++.+++++.+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----- 370 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD----- 370 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Confidence 34456778888899999999999988885533 46777788888999999999999999999998863
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
|.......++|.+|+..|++.+|+.++.+.+. ..++....|..||..|..+|+..+|...
T Consensus 371 ---P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 371 ---PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred ---CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 44466788999999999999999988888776 4566677888899999999987766443
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES 286 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~ 286 (1060)
.|..|...|++++|+..+..+.+. .+.+.+.....-..+.....
T Consensus 431 ----------------~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 431 ----------------RAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred ----------------HHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHHH
Confidence 355666788999999888877654 34555555555444444433
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.51 E-value=9.2e-07 Score=102.04 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 189 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~ 189 (1060)
+...|..++..|+|++|+.+|++|+++. +....+++++|.+|..+|++++|+.++++++.+ .+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 4567888899999999999999999862 445778999999999999999999999999996 344
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
...+++++|.+|+.+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999875
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.7e-06 Score=94.08 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=112.6
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
...+...+..+|+..+..|+|.+|+..++++..+ .|....+|+.+|.+|.+.|+++.|...|.+++++.
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--- 164 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--- 164 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---
Confidence 3445556666899999999999999999999865 46778999999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
+....+++|||..|+-.|+++.|..++..+... ......+..||+.+...+|++++|.....+
T Consensus 165 -----~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 -----PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -----cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 234567999999999999999999999998762 233456788999999999999999876654
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=4e-06 Score=103.16 Aligned_cols=235 Identities=13% Similarity=0.012 Sum_probs=174.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
+.+...|+..|-+++++ ++..+.++..||.+|+..-+...|..+|++|.++ ++..+.+.-.++.
T Consensus 471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~ad 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASAD 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHH
Confidence 34567788888888765 4678899999999999999999999999999887 2345677788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 237 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~ 237 (1060)
.|.+..+++.|...+..+-+.... ......+..+|..|...+++.+|+..|+.|++.. |....++.
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~ 600 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWL 600 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHH
Confidence 999999999999885554443211 1123445569999999999999999999999864 66678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhhhcCCCcHHH
Q 001523 238 AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD-ASIASKGHLSVSD 316 (1060)
Q Consensus 238 nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d-~~~a~~~~~svse 316 (1060)
.||.+|...|+|.-|++.|.+|..+ .+.+ .......+.++...++..+++......+. ..........+.+
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s---~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL-----RPLS---KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc-----CcHh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999998765 3333 33333344445555555554433222111 1122233456788
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcC
Q 001523 317 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 350 (1060)
Q Consensus 317 lL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~ 350 (1060)
++..++..+..+|=+.+|..+++++++.+--+..
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988776543
No 120
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.5e-05 Score=81.70 Aligned_cols=227 Identities=17% Similarity=0.055 Sum_probs=159.9
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 100 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 100 g~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
..+....+..|..-+.+|....+|++|...+.+|.+.++... .....+.+|-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355566677888889999999999999999999998877643 233467889999999999999999999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 180 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 180 ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
.+.+ .++.+..-..-|.-....-+.++|+.+|++++.+.+.- .....-...+..+++++.+..+|.+|...+++-
T Consensus 102 ~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 8865 44445444445555567788999999999999998543 222334456778899999999999999988887
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001523 260 LQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 338 (1060)
Q Consensus 260 LeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~Y 338 (1060)
.-+..+.-.-....-......|.++....+..++........+.... ...-...+.+|-..| ..|+.+++-...
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 66665553333443444455566777777777776655432222222 222334455554444 457777655443
No 121
>PLN03077 Protein ECB2; Provisional
Probab=98.48 E-value=3e-05 Score=99.10 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
..+|+.|...|...|+.++|+++|++..+. | -.|+ ..++..+-..|...|++++|+++|+...+.. .-
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi 621 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SI 621 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CC
Confidence 446778888888888888888888886652 1 1222 2345556667888899999999998876433 11
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhh
Q 001523 229 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 308 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~ 308 (1060)
.| ....|..+..+|.+.|++++|.+++++. . ..+ +..++.++..... ..+..+.++........+
T Consensus 622 ~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~-----~~p-d~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l------ 686 (857)
T PLN03077 622 TP-NLKHYACVVDLLGRAGKLTEAYNFINKM-P-----ITP-DPAVWGALLNACR-IHRHVELGELAAQHIFEL------ 686 (857)
T ss_pred CC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-C-----CCC-CHHHHHHHHHHHH-HcCChHHHHHHHHHHHhh------
Confidence 22 2356778899999999999998887753 1 122 3444444333221 112222222111111111
Q ss_pred cCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 309 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 309 ~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
.+.....|..|+.+|...|++++|....+...+
T Consensus 687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 122334688899999999999999988865443
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.45 E-value=2.2e-05 Score=83.54 Aligned_cols=143 Identities=20% Similarity=0.157 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
....++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.+|+..|+|++|+..|++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45688999999999999999999999998875 5567788999999999999999999999999998863 4
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhcCCCcH--------------HHHHHHHHHH
Q 001523 186 SHPNTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCNQRLLGPDHI--------------QTAASYHAIA 240 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lG-----------dydEAie~yekALei~eeilG~dhp--------------~~a~a~~nLA 240 (1060)
.++....+++.+|.+++.+. ...+|+..|+..+..+ +++. ..+.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999876543 3447777777777654 3322 1233345678
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 001523 241 IALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 241 ~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
..|.++|.|..|+..++.+++-+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC
Confidence 88999999999999998887764
No 123
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.45 E-value=4.1e-05 Score=91.27 Aligned_cols=230 Identities=16% Similarity=0.075 Sum_probs=160.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 001523 73 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 152 (1060)
Q Consensus 73 ~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay 152 (1060)
..--..|..++-..++++|+..+ |..-..|...+.-++..|+...|...+.+|.+.. +....++
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiw 621 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIW 621 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHH
Confidence 33345567777777777777653 3344566677778888889999888888887752 3344556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001523 153 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 232 (1060)
Q Consensus 153 ~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~ 232 (1060)
..--.+.+...+++.|..+|.++..+ ..+..+|+.-+.+...+++.++|++++++||+.+ +..
T Consensus 622 laavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f 684 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDF 684 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------Cch
Confidence 66666777888889998888888763 1235677778888889999999999999999876 556
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCC
Q 001523 233 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHL 312 (1060)
Q Consensus 233 a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~ 312 (1060)
...|..+|.++..+++.+.|...|...++.+ +..+..+..+..|..... ..-.+..+... ....++
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWllLakleEk~~-~~~rAR~ildr--------arlkNP 750 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWLLLAKLEEKDG-QLVRARSILDR--------ARLKNP 750 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHHHHHHHHHHhc-chhhHHHHHHH--------HHhcCC
Confidence 6788889999999999999999888887764 555555555554433222 22222332211 111234
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 313 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 313 svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
....+|...-.+-.+.|+.+.|.....+||+-+.+..
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 4445565666666888999999999999999887654
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.42 E-value=4e-05 Score=84.12 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
....++..|..++..|+|++|+..|++++... +..+....+...+|.+|+++++|++|+.+|++.++. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 45567888999999999999999999998864 455667778899999999999999999999999986 45
Q ss_pred CChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----------
Q 001523 186 SHPNTAATYINVAMMEEGLG---------------N---VHVALRYLHKALKCNQRLLGPDHIQTAASYH---------- 237 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lG---------------d---ydEAie~yekALei~eeilG~dhp~~a~a~~---------- 237 (1060)
+++....+++.+|.++..++ + ..+|+..|++.++.+ +++.....+..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78888999999998875554 1 235666676666654 34333333332
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCc
Q 001523 238 ----AIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 313 (1060)
Q Consensus 238 ----nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~s 313 (1060)
.+|..|.+.|+|..|+.-++..++-+ ++...
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---------------------------------------------p~t~~ 210 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY---------------------------------------------PDTQA 210 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC---------------------------------------------CCCch
Confidence 34444444444444444443333221 12334
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001523 314 VSDLLDYINPSHDTKGRNVSTLKRKT 339 (1060)
Q Consensus 314 vselL~~Lg~~y~~qGqyeEAl~~Ye 339 (1060)
..+++..+..+|...|..++|..+..
T Consensus 211 ~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 211 TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56778888999999999998877653
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.7e-05 Score=94.18 Aligned_cols=118 Identities=18% Similarity=0.100 Sum_probs=76.3
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hcCCCChh----------HHHHHHHHHHHHHHcCCHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA---VCGPYHRM----------TAGAYSLLAVVLYHTGDFNQ 125 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ek---ilg~d~p~----------~A~A~~~LA~ly~~lGdyee 125 (1060)
.+.-..-.++|..|..+...++.+.|++||+++-..+.. .+.. +|. .-..|.+-|..+...|+.+.
T Consensus 852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 344445668889999999999999999999986322111 1111 111 12467778888889999999
Q ss_pred HHHHHHHHHHHHHHhc-----CCC--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 126 ATIYQQKALDINEREL-----GLD--------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 126 Ale~yqKALeL~ek~~-----g~d--------~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
|+.+|..|-+.+.... |.. ......+.+.||..|...|++.+|+.+|.+|..
T Consensus 931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999998877653220 100 001123456677777777777777777766543
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=2e-06 Score=103.42 Aligned_cols=167 Identities=21% Similarity=0.255 Sum_probs=138.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
+..|...||+-.=-.+|++|.++... ..+.|.+.+|...+..++|.+|.++++.++++. +.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhH
Confidence 56777788887778888888888643 245577888888888999999999999999983 556788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 231 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~ 231 (1060)
|+.+|.++.++++++.|.++|.+++.+ .|+...+++||+..|...++-.+|...+++|+++. ..|+.
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~ 588 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQ 588 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCe
Confidence 999999999999999999999999884 46678999999999999999999999999999976 23443
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
+ +.|.-.+..+.|.+++|++.|++.+.+.+...++
T Consensus 589 i---WENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 589 I---WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred e---eechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 3 4444566679999999999999999987766533
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=3.8e-05 Score=86.04 Aligned_cols=213 Identities=17% Similarity=0.062 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
.++..+.-.+.||.-++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.++|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 44566677889999999999999999999999985 4677889999999999999999999999999985
Q ss_pred hCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC-CCc------HHHHHHHHHHHHHHHhcCChhHHHH
Q 001523 182 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG-PDH------IQTAASYHAIAIALSLMEAYPLSVQ 254 (1060)
Q Consensus 182 ~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG-~dh------p~~a~a~~nLA~ly~~lGdyeEAie 254 (1060)
.|+...+....|.++..+|++++|..-|+.+|...-.... .++ ......+......+...|++..|+.
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 5677888899999999999999999999998874310000 000 0111122233444556789999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHH
Q 001523 255 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST 334 (1060)
Q Consensus 255 ~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEA 334 (1060)
+....|++. +-+ +..+..-+.++...++...|+.. .....+...+..+.++.++.+++..|+.+.+
T Consensus 177 ~i~~llEi~-----~Wd---a~l~~~Rakc~i~~~e~k~AI~D------lk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 177 MITHLLEIQ-----PWD---ASLRQARAKCYIAEGEPKKAIHD------LKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHHHHHhcC-----cch---hHHHHHHHHHHHhcCcHHHHHHH------HHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 988888763 211 12222222333333333333321 1222222223345555666666666666555
Q ss_pred HHHHHHHHHH
Q 001523 335 LKRKTYVAKV 344 (1060)
Q Consensus 335 l~~YeqALkL 344 (1060)
+.-.++.|++
T Consensus 243 L~~iRECLKl 252 (504)
T KOG0624|consen 243 LKEIRECLKL 252 (504)
T ss_pred HHHHHHHHcc
Confidence 5544444443
No 128
>PLN03077 Protein ECB2; Provisional
Probab=98.39 E-value=2.1e-05 Score=100.48 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
+...+..+...|...|++++|.++|++... + ....|+.+...|.+.|++++|+.+|++..+.. ..+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~P 387 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAVSWTAMISGYEKNGLPDKALETYALMEQDN---VSP 387 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCC
Confidence 445556667777777888887777766421 1 13467777777888888888888777654321 111
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
+ ..++..+-..+...|++++|.+++..+++. | ......++..|..+|.+.|++++|++.|++..+
T Consensus 388 d----~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-----g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 452 (857)
T PLN03077 388 D----EITIASVLSACACLGDLDVGVKLHELAERK-----G--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE---- 452 (857)
T ss_pred C----ceeHHHHHHHHhccchHHHHHHHHHHHHHh-----C--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----
Confidence 1 123444455666777777777777766553 1 112245667788888888888888888876422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
.+ ..+|..+...|...|++++|+.+|++.+
T Consensus 453 ---~d----~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 453 ---KD----VISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred ---CC----eeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 2356667777888888888888888765
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=2.6e-06 Score=73.59 Aligned_cols=96 Identities=36% Similarity=0.532 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p 188 (1060)
+++.+|.++...|++++|+.+++++++.. +....++..+|.+|...+++++|+.+|++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998863 2233678999999999999999999999998852 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 189 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
....++..+|.++..+|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 130
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=5.5e-05 Score=81.72 Aligned_cols=189 Identities=15% Similarity=0.024 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
+..+..-+..|....+|++|..++.+|.+-.+.. ......+.+|-..|.+...+..+.++..+|++|..++.+...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs-- 106 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS-- 106 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--
Confidence 3344445678888999999999999999877654 233456788999999999999999999999999999987543
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
++.+..-..-|.=....-+.++|+.+|++++.+.+... ........+..++++|....+|++|-..+.+-..+....
T Consensus 107 -pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 107 -PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred -cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 44444444444445567789999999999999987632 333445667788999999999999999888866665544
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
- ........+..+-.+|+...+|..|...++.+.++
T Consensus 184 ~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 184 D--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred h--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 1 22233344555556677788999999999987765
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=3.1e-06 Score=73.09 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.++.+|..++..|++++|+.+++++++.. +....++..+|.++...+++++|+.+|++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46778999999999999999999998762 2334788999999999999999999999998863 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367899999999999999999999998764
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.33 E-value=2e-05 Score=95.19 Aligned_cols=142 Identities=15% Similarity=0.057 Sum_probs=109.9
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH--------H
Q 001523 57 QAACSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN--------Q 125 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGd---yeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdye--------e 125 (1060)
...+...+|..++..|..++.+++ +..|+.+|++|+++ +|..+.++..|+.+|.....+. +
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 345677899999999999987766 78999999999977 5788888888888886653332 3
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCC
Q 001523 126 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 205 (1060)
Q Consensus 126 Ale~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lG 205 (1060)
+....++++.+ ...+....+|.-+|..+...|++++|..+|++|+++. +. +.+|..+|.++...|
T Consensus 403 a~~~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G 467 (517)
T PRK10153 403 LSTELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKG 467 (517)
T ss_pred HHHHHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcC
Confidence 33333333222 1122235678888999999999999999999999962 32 578999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 001523 206 NVHVALRYLHKALKCN 221 (1060)
Q Consensus 206 dydEAie~yekALei~ 221 (1060)
++++|+++|++|+.+.
T Consensus 468 ~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 468 DNRLAADAYSTAFNLR 483 (517)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999999875
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=0.00014 Score=87.21 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001523 32 FFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYS 111 (1060)
Q Consensus 32 lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~ 111 (1060)
+|-.+++.+..=..--++-+++++- ......+.++-.+|..+...|+-++|..+.+.++.. +.....+|.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwH 79 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHH
Confidence 4555666555422222222333221 244455678888899999999999999999998853 455567999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHH
Q 001523 112 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 191 (1060)
Q Consensus 112 ~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a 191 (1060)
.+|.++....+|++|+.+|+.||.+ .++...++..|+.+...+++|+-....-.+.+++ .+..-
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~r 143 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQR 143 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhH
Confidence 9999999999999999999999987 2456788999999999999999988887777774 34445
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
..|..+|..+...|++..|...++.-.................+......++...|.+++|++++..
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 6788899999999999999999888776654222222333445555667777888888888777654
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00051 Score=74.88 Aligned_cols=171 Identities=17% Similarity=0.107 Sum_probs=128.5
Q ss_pred CcHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 61 SSADGRQLLE-SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 61 ~s~dAraLle-lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
..++...+++ .....+..|+.+-|..++.+..+.+ |..-++...-|..+...|+|++|+++|...|+-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--- 115 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--- 115 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---
Confidence 3445555555 4567788999999999988876543 344456677788899999999999999887752
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 140 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 140 ~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
+|....++-.--.+...+|+--+|++.+..-++.+ +....+|..|+.+|...|+|++|.-||++.+-
T Consensus 116 -----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 116 -----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred -----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34444455555566778888889999888888765 22367899999999999999999999999886
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHH
Q 001523 220 CNQRLLGPDHIQTAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 220 i~eeilG~dhp~~a~a~~nLA~ly~~lG---dyeEAie~lqkALeI~ 263 (1060)
+. |.....+..+|.+++-+| ++.-|.++|.+++++.
T Consensus 183 ~~--------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ--------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 54 333445566777776555 6677999999999884
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=9.9e-06 Score=89.94 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=92.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 65 GRQLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 65 AraLlelA~~y-l~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
....|..|..+ +..|+|++|+..|++.++.+ ++......++++||.+|+..|+|++|+.+|++++..+ +
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46778888876 66899999999999999774 5556677899999999999999999999999999875 5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
+++....+++.+|.+|..+|++++|..+|+++++.+
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 677889999999999999999999999999998853
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=7e-06 Score=98.92 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=144.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 70 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
.++..++..|-...|+..|++.- .+.....||...|+..+|....++-++- +...
T Consensus 403 ~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~ 457 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDP 457 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcc
Confidence 35777777777777777666543 4556677888888888888777665541 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
..|..+|.+ -.=..+|++|.++.... .+.+...+|......++|.++.++++.++++.
T Consensus 458 ~lyc~LGDv-------~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------- 515 (777)
T KOG1128|consen 458 RLYCLLGDV-------LHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN-------- 515 (777)
T ss_pred hhHHHhhhh-------ccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------
Confidence 344444444 44445666666654322 24466667887888899999999999999875
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc
Q 001523 230 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK 309 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~ 309 (1060)
+.....|+.+|.++.+++++..|..+|..++.+ .++|...+..+.. .+....+..++......++... .
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls~---ayi~~~~k~ra~~~l~EAlKcn---~ 584 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLST---AYIRLKKKKRAFRKLKEALKCN---Y 584 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhhH---HHHHHhhhHHHHHHHHHHhhcC---C
Confidence 556778999999999999999999999988876 5777655544433 3333333333333222222111 1
Q ss_pred CCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhc
Q 001523 310 GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 310 ~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~ 349 (1060)
.+. .++.+.-.+....|.+++|+..|.+.+.+.....
T Consensus 585 ~~w---~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 585 QHW---QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred CCC---eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 122 2344555566889999999999999998887644
No 137
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.29 E-value=1.5e-05 Score=78.40 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 187 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~ 187 (1060)
.+++.+|.++-.+|+.++|+.+|++++.. +.+......++..+|..|..+|++++|+..+++++..+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36778888888888888888888888774 34445567788888888888888888888888877631 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 188 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 188 p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.........++.++..+|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22445556678888888888888888877664
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=5.9e-06 Score=75.18 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 001523 77 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 156 (1060)
Q Consensus 77 ~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA 156 (1060)
++|+|++|+.+|+++++... ..+ ....++.||.+|+.+|+|++|+.++++ +... +....+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 47899999999999998742 122 556777899999999999999999999 4432 23456677889
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 001523 157 VFYYRLQHTELALKYVKRA 175 (1060)
Q Consensus 157 ~lY~~lGdyeeAleyyekA 175 (1060)
.++..+|+|++|+++|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.27 E-value=0.00037 Score=68.21 Aligned_cols=173 Identities=27% Similarity=0.278 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.......+..+...+++..+...+..++.. .........+..++.++...+++..|+..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 445566677777888888888877777653 113455667777788888888888888877777764211
Q ss_pred ChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 145 ~p~~a~ay~nLA~-lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
. .......+. ++...|++++|..+|.+++... .........+..++..+...+++++|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 112223333 7778888888888888875421 001234455556666677788888888888888776522
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
. ....+..++.++...+++..|...+..++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 34556677788888888888888777777653
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.27 E-value=0.00061 Score=78.10 Aligned_cols=246 Identities=17% Similarity=0.043 Sum_probs=158.4
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
...++.....|..-+..|+|.+|++...++-+. .+.-..+|..-+.+-..+|+++.|-.|+.++-+..
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~---- 148 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA---- 148 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC----
Confidence 345667777888889999999999999886543 34445567777888899999999999999987752
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC- 220 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei- 220 (1060)
+ .+....+...+.++..+|++..|..-..++++. .+.....+.....+|...|+|.+...++.+..+.
T Consensus 149 -~--~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 149 -G--DDTLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred -C--CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 1 225667888999999999999999999998884 3333455666788999999998888777543221
Q ss_pred ------------------HHHhcCC-CcHH--------------HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 221 ------------------NQRLLGP-DHIQ--------------TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 221 ------------------~eeilG~-dhp~--------------~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
..+.-.. .... .......++.-+..+|++++|.+..+++++-.
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---- 293 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---- 293 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----
Confidence 0010000 0000 01223345677788999999999988887641
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 268 GPDDLRTQDAAAWLEYFESKAFEQ-QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 268 g~dh~~t~~al~~La~l~~k~~e~-AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
.++.. ...+..+.-+.... .+.+. .....++.-..++..||.+|.+.+.+.+|..+++.|++...
T Consensus 294 --~D~~L---~~~~~~l~~~d~~~l~k~~e---------~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 294 --WDPRL---CRLIPRLRPGDPEPLIKAAE---------KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred --cChhH---HHHHhhcCCCCchHHHHHHH---------HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 12221 11111111111111 11110 01111223336777788888888888888888887777666
Q ss_pred hh
Q 001523 347 NF 348 (1060)
Q Consensus 347 ki 348 (1060)
+.
T Consensus 360 s~ 361 (400)
T COG3071 360 SA 361 (400)
T ss_pred Ch
Confidence 53
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.27 E-value=0.00022 Score=86.92 Aligned_cols=218 Identities=17% Similarity=0.112 Sum_probs=149.8
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 26 KKDGTSFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM 105 (1060)
Q Consensus 26 ~aea~~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~ 105 (1060)
++.-+.++.+++..|..+..+...+=. ...-.....+.++.++..|...|.-..|+.+.++.+.+.+ ...+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~----~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps~ 392 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQ----ALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPSD 392 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCCc
Confidence 456677788888888775443332210 1112234466788889999999998899988888876532 1233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ----HTELALKYVKRALYLLHL 181 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lG----dyeeAleyyekALei~ee 181 (1060)
....++.-..|+...+.++++++|.++++..+... .......+|..+|.+|..+- ...+=..+..++++.+++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 44455556667778899999999999999977432 22345677888888886542 223333333444443333
Q ss_pred hC--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 182 TC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 182 ~~--g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
.. ++.++ .+.+.||.-|..+++.+.|+++.++++++. + ...+.++..||.++...+++.+|+.....+
T Consensus 470 av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~---~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 470 AVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALN----R---GDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----C---CccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 21 22333 667889999999999999999999999873 1 234678888999999999999999999888
Q ss_pred HHHHHH
Q 001523 260 LQILRA 265 (1060)
Q Consensus 260 LeI~rk 265 (1060)
++.+..
T Consensus 540 l~E~~~ 545 (799)
T KOG4162|consen 540 LEEFGD 545 (799)
T ss_pred HHHhhh
Confidence 876644
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00011 Score=80.09 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
..+-++-++++.+.+.....- ...++....+-.+..+....|+.+-|..++.+..+-+ +.+ .++...-|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S---~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGS---KRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCC---hhHHHHHHH
Confidence 345667777777776655433 1223445567777888888999999999988765543 222 345566788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 237 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~ 237 (1060)
.+...|+|++|+++|+..++ ++|....++-.--.+...+|+--+|++.+.+-++.+ .....+|.
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~ 158 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH 158 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence 89999999999999999887 456556666666667778899899999999888876 33457899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 238 AIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 238 nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.|+.+|...|+|++|.-+|++.+-+
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999988765
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.24 E-value=4.8e-06 Score=72.41 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 178 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lG-dyeeAleyyekALei 178 (1060)
.+.+|..+|.+++..|+|++|+.+|.+++++ ++....+++++|.+|..+| ++++|++++++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999998 3567889999999999999 799999999999985
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=9.2e-05 Score=83.21 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
-...||.+.+..-.|++|++.|+++|. +.+.....-..+|.||.++.-|+-+.+.++--|
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 345677777777778888888877765 335555555668888888888877766555444
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.4e-05 Score=91.53 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p-------~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
+.....-|..|+..|+|..|...|++|+..+......+.. ....+++|||.||.++++|.+|+.++.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 3445667999999999999999999999987633222211 24567899999999999999999999999985
Q ss_pred HHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 180 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 180 ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.+....+++.-|.+|..+|+|+.|+..|++++++.
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45567899999999999999999999999999976
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.21 E-value=2.6e-05 Score=86.57 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=90.6
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 108 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 108 ~A~~~LA~ly-~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
..++..|..+ +..|+|++|+..|++.+..+ +++.....+++.+|.+|+..|+|++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5677777766 56799999999999999875 4555567889999999999999999999999999863 46
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
++....+++.+|.+|..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77788999999999999999999999999998865
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.21 E-value=0.00012 Score=90.81 Aligned_cols=177 Identities=12% Similarity=0.014 Sum_probs=121.5
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.+.-+..-|..+-.+|.+|...-+...|.++|.+|.++ ++..+.+...++..|....+++.|......+-+.
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 44555666777888899998888999999999999876 3455667777888888888888887764443332
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 137 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 137 ~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
... ......+..+|..|...+++..|+..|+.|+.. +|....++..||.+|...|+|.-|++.|.+
T Consensus 556 a~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 556 APA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred chH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 111 111223344777777777777777777777763 455667777777777777777777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 217 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 217 ALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
|..+. |......+..|.+...+|+|.+|+..+...+..+
T Consensus 622 As~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 622 ASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred hHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 76653 3344555666777777777777777776665544
No 148
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=2.1e-05 Score=77.53 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
.+.+++|.++..+|+.++|+.+|++++.. |........+++.+|..|..+|++++|+..+++++... ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 36789999999999999999999999984 44566677899999999999999999999999998743 332
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 230 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
.........++.++..+|++++|+.++..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555688899999999999998877664
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=9.4e-06 Score=73.84 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=65.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001523 161 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 240 (1060)
Q Consensus 161 ~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA 240 (1060)
.+|+|+.|+.+|+++++.... .+ ....++.||.+|+.+|+|++|+.++++ +... +....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999986421 22 455677899999999999999999998 4433 22355666789
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 001523 241 IALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 241 ~ly~~lGdyeEAie~lqkA 259 (1060)
.++..+|+|++|+.+|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.17 E-value=9.1e-06 Score=70.67 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDI 136 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG-dyeeAle~yqKALeL 136 (1060)
+..++.+|.+++..|+|++|+.+|.+++++ ++....+++++|.+|+.+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 668889999999999999999999999987 4777889999999999999 799999999999986
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.6e-05 Score=89.50 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-------MTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p-------~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
|...-+.|+.|+..|+|..|...|++|+..+....+.+.. ....++.+||.||..+++|.+|+.++.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 4556678999999999999999999999887643322221 23457899999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV-ALRYLHK 216 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydE-Aie~yek 216 (1060)
.+....+++.-|.+|..+|+|+.|+..|++++++. |..-.+...|..+.....++.+ ..++|.+
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999962 2233444555555544433333 3555555
Q ss_pred HHHH
Q 001523 217 ALKC 220 (1060)
Q Consensus 217 ALei 220 (1060)
.+..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 5443
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00017 Score=79.73 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=138.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001523 76 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 155 (1060)
Q Consensus 76 l~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nL 155 (1060)
..-.+|+.|++++..-.+. .+.....+..||.||++..+|..|..+|.+.-.+ +|.........
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5566788888777655432 4556678899999999999999999999987665 46666667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH----------HHHHHh-CCC-------------CChhHHHHHHHHHHHHHHCCCHHHHH
Q 001523 156 AVFYYRLQHTELALKYVKRAL----------YLLHLT-CGP-------------SHPNTAATYINVAMMEEGLGNVHVAL 211 (1060)
Q Consensus 156 A~lY~~lGdyeeAleyyekAL----------ei~ee~-~g~-------------d~p~~a~a~~nLA~iy~~lGdydEAi 211 (1060)
|..++..+.+..|+....... ++...+ +.. .....+...++.|.+.++.|+|+.|.
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 888888888888887654332 221100 000 01234566778888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 001523 212 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 291 (1060)
Q Consensus 212 e~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~ 291 (1060)
+-|+.|++.. ...+ ..-+++|.+++..++|+.|+.+..+.++.-. .+||....-+.
T Consensus 165 qkFqaAlqvs-----Gyqp---llAYniALaHy~~~qyasALk~iSEIieRG~----r~HPElgIGm~------------ 220 (459)
T KOG4340|consen 165 QKFQAALQVS-----GYQP---LLAYNLALAHYSSRQYASALKHISEIIERGI----RQHPELGIGMT------------ 220 (459)
T ss_pred HHHHHHHhhc-----CCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----hcCCccCccce------------
Confidence 8888887753 2223 2345678888888888888887776655421 24443321110
Q ss_pred HHHHHhcCCCCchhh---h-hcCCCcHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001523 292 QEAARNGTRKPDASI---A-SKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 338 (1060)
Q Consensus 292 AeAl~~~~~~~d~~~---a-~~~~~svselL~~Lg~~y~~qGqyeEAl~~Y 338 (1060)
...++... . .-....+.++++.-+.++.+.|+++.|.+.+
T Consensus 221 -------tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 221 -------TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred -------eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 00011000 0 0001135567777888889999999887665
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00016 Score=87.81 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=93.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-------------------HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKAL-------------------AKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 132 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekAL-------------------el~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqK 132 (1060)
|.+...+|.+++|+.+|++.- ++++. .|....-..|++.|..+...++.+.|++||++
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 444555666666666666543 33321 23344567899999999999999999999998
Q ss_pred HHHHHHHh---cCCCChhH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----CCCC--------
Q 001523 133 ALDINERE---LGLDHPDT----------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-----CGPS-------- 186 (1060)
Q Consensus 133 ALeL~ek~---~g~d~p~~----------a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~-----~g~d-------- 186 (1060)
+-....++ +. +.|.. -..|.--|..+...|+.+.|+.+|..|-+.+... .|..
T Consensus 884 ~~~hafev~rmL~-e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLK-EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred cCChHHHHHHHHH-hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH
Confidence 63221110 00 11111 1345567888888999999999999887764321 1111
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
......+.+.||+.|...|++.+|+.+|.+|-.
T Consensus 963 esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 011124567899999999999999988876543
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.07 E-value=0.0002 Score=86.51 Aligned_cols=145 Identities=19% Similarity=0.061 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
....+++.+|..|...|++++|+.++.+||+. .|.....|...|.+|.+.|++.+|..++..|..+-
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD----- 258 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD----- 258 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-----
Confidence 34578888999999999999999999999965 68889999999999999999999999999998762
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d---~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
...--+-...+..+.+.|+.++|.+.+..-..--. .... .....+.....|.+|.++|++..|+..|..+++
T Consensus 259 ---~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 259 ---LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ---hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11223345567788899999999987654322100 0001 112345556779999999999999999999999
Q ss_pred HHHHhc
Q 001523 220 CNQRLL 225 (1060)
Q Consensus 220 i~eeil 225 (1060)
++....
T Consensus 334 ~f~~~~ 339 (517)
T PF12569_consen 334 HFDDFE 339 (517)
T ss_pred HHHHHh
Confidence 987764
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.05 E-value=0.0011 Score=72.65 Aligned_cols=177 Identities=17% Similarity=0.184 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
-+..||..|...++.|+|++|+..|+.+.... +..+..-.+...++.+++..++|++|+.+..+-+.++ +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 36789999999999999999999999887432 5566778899999999999999999999999999885 6
Q ss_pred CChhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCC------------ChhHHHHHHHHHHHHHHCCC
Q 001523 144 DHPDTMKSYGDLAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPS------------HPNTAATYINVAMMEEGLGN 206 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lG-----dyeeAleyyekALei~ee~~g~d------------~p~~a~a~~nLA~iy~~lGd 206 (1060)
.|++...+++..|.+++..= |...+...+...-++..+.-... ....+.--+.+|..|.+.|.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67888888999998887532 33333333333322222211000 01112233567889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHH
Q 001523 207 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 255 (1060)
Q Consensus 207 ydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~ 255 (1060)
+--|+..++++++-. ++....-.++..|..+|..+|-.++|...
T Consensus 183 ~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 183 YVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999999999998865 33345567788899999999999998654
No 156
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00015 Score=71.93 Aligned_cols=102 Identities=24% Similarity=0.219 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.+.+-..|..+...|+++.|++.|.++|.++ |..+.+|++.|..|..+|+.++|++-+.+|+++. ++.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 3455557889999999999999999999885 6778999999999999999999999999999985 344
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
......++..-|.+|..+|+.+.|..-|+.|-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 4556788999999999999999999999999876
No 157
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0005 Score=80.15 Aligned_cols=195 Identities=17% Similarity=0.104 Sum_probs=145.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 70 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fekALel~ekilg~--d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
.+..+-+-.|++.+|++-...+.+.+.+.-++ -....+...+.+|......+.|+.|+..|..|+++.... ..
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl 402 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DL 402 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HH
Confidence 35667788999999999999999988765321 123456788899999999999999999999999986542 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d-------~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.+-+..|+|..|.+.++-+.-. ++++.. ++. ....+.+++..|...+.++++.||...+.+.|++
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 5666788999999987755433 333332 222 2234567788888899999999999999999998
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 281 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~L 281 (1060)
.... .....++..+..|+.+....|+..++....+-++++.++. +|++..+.....+
T Consensus 475 anae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~ 531 (629)
T KOG2300|consen 475 ANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSIL 531 (629)
T ss_pred cchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHH
Confidence 7221 1123345667789999999999999999999999998877 5666555444433
No 158
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00041 Score=74.78 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001523 79 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 158 (1060)
Q Consensus 79 GdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~l 158 (1060)
+.|++|.++|.+|- +.|....++..|=..|.+|-++..+.. ...+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aa----------------------n~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAA----------------------NMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHH----------------------HHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 46667766666664 444455666777777777777655542 223466677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001523 159 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 237 (1060)
Q Consensus 159 Y~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l-GdydEAie~yekALei~eeilG~dhp~~a~a~~ 237 (1060)
|.+. +.++|..+++++++|+...+ .-...+..+..+|.+|... .++++|+.+|++|-+.+..- ......-.++.
T Consensus 84 ykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~l 158 (288)
T KOG1586|consen 84 YKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLL 158 (288)
T ss_pred hhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHH
Confidence 7654 99999999999999987754 2334466778899999865 99999999999999887422 11222346777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 001523 238 AIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 238 nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
..|.....+++|.+|+..|++...
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999887654
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.00011 Score=89.01 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH--------HHHHHHHH
Q 001523 106 TAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKR 174 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGd---yeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdye--------eAleyyek 174 (1060)
.+..++..|.-|...++ +.+|+.+|++|+++ +|+.+.++..++.+|.....+. .|.+.+++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44556677777776655 88999999999987 4667788888888776653332 23333333
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 001523 175 ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 254 (1060)
Q Consensus 175 ALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie 254 (1060)
++.+ ...+....++..+|.++...|++++|..+|++|+++. + .+.+|..+|.++...|++++|+.
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 2221 0122234678888999999999999999999999975 2 25688899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH
Q 001523 255 HEQTTLQILRAKLGPDDLR 273 (1060)
Q Consensus 255 ~lqkALeI~rkllg~dh~~ 273 (1060)
+|++|+.+ .+.++.
T Consensus 475 ~~~~A~~L-----~P~~pt 488 (517)
T PRK10153 475 AYSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHHhc-----CCCCch
Confidence 99999987 566664
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0012 Score=74.68 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=71.0
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHhcCCCChh----------HHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK----------LVAVCGPYHRM----------TAGAYSLLAVVLY 118 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel----------~ekilg~d~p~----------~A~A~~~LA~ly~ 118 (1060)
..+...++....+|-+++..|.|.+|..+..+|-+. ..+. .+... ..+-...||.+++
T Consensus 85 ~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl--ndEk~~~~fh~~LqD~~EdqLSLAsvhY 162 (557)
T KOG3785|consen 85 NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL--NDEKRILTFHSSLQDTLEDQLSLASVHY 162 (557)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--CcHHHHHHHHHHHhhhHHHHHhHHHHHH
Confidence 455566777888899999999999988876665221 1111 11111 1223345566666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
..-.|++|++.|.+.|. +.+.....-.++|.||+++.-|+-+.+.+.--|.
T Consensus 163 mR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 66677777777777665 3566666777899999999999888776654443
No 161
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.98 E-value=0.00079 Score=80.90 Aligned_cols=187 Identities=16% Similarity=0.076 Sum_probs=113.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---
Q 001523 70 ESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--- 140 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fek------ALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~--- 140 (1060)
.-|.+|-...++++|+++|++ |+++.+-.+ .......-..-|.-+.+.|+++.|+.+|-+|-.+.+.+
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 345566666777888887765 444433222 12233344455777788899999998887654332211
Q ss_pred cC--------------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHH-------------HHhCCCCC
Q 001523 141 LG--------------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKR------ALYLL-------------HLTCGPSH 187 (1060)
Q Consensus 141 ~g--------------~d~p~~a~ay~nLA~lY~~lGdyeeAleyyek------ALei~-------------ee~~g~d~ 187 (1060)
.+ .+.......|..++.-|...|+|+.|.++|-+ |+.++ .+-.+ .
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~--~ 820 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHG--P 820 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcC--c
Confidence 00 01111233466778888888888888887754 33332 22222 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhc---------CCCcHH-HHHHHHHHHHHHHhcCChhH
Q 001523 188 PNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRLL---------GPDHIQ-TAASYHAIAIALSLMEAYPL 251 (1060)
Q Consensus 188 p~~a~a~~nLA~iy~~lGdydEAie~y------ekALei~eeil---------G~dhp~-~a~a~~nLA~ly~~lGdyeE 251 (1060)
..+...|...|.-+...|+|.+|.++| .+|+.++.+.. +..|+. .......+|.-|...|+...
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence 345567777788888889988888777 45665554431 112222 23556678888888999998
Q ss_pred HHHHHHHHHH
Q 001523 252 SVQHEQTTLQ 261 (1060)
Q Consensus 252 Aie~lqkALe 261 (1060)
|..+|.+|-+
T Consensus 901 ae~~flea~d 910 (1636)
T KOG3616|consen 901 AEEHFLEAGD 910 (1636)
T ss_pred HHHHHHhhhh
Confidence 8887766543
No 162
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0024 Score=74.70 Aligned_cols=249 Identities=13% Similarity=-0.033 Sum_probs=156.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh
Q 001523 76 LDKGKLEDAVTYGTKALAKLVAVCGPY--HR----MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL--DHPD 147 (1060)
Q Consensus 76 l~qGdyeEAi~~fekALel~ekilg~d--~p----~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~--d~p~ 147 (1060)
+..|-|++|.++-.+++...++....+ .+ .....+-++..|-.-.|++.+|++....+.+.+.+..++ -...
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 356788999999999998876653322 11 123456677888888999999999999999998775431 1122
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 227 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~ 227 (1060)
.+.+.+.+|......+.|+.|...|..|++...+. ...+.+..|||..|...|+-+. + .++++.. ++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed---~-y~~ld~i----~p 432 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAED---L-YKALDLI----GP 432 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHH---H-HHHHHhc----CC
Confidence 56777888998899999999999999999875432 2346667789999999887543 2 2333332 22
Q ss_pred C-------cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001523 228 D-------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL-RTQDAAAWLEYFESKAFEQQEAARNGT 299 (1060)
Q Consensus 228 d-------hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~-~t~~al~~La~l~~k~~e~AeAl~~~~ 299 (1060)
. +...+.+++..|...+.++++.||..++.+.|++... ++.. .+...+..|..+..-.++..++.....
T Consensus 433 ~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana---ed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 433 LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA---EDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 2 1234566777888889999999999999999998621 1211 122222233333322322222221111
Q ss_pred CCCchhhhhcCCCcHHHHHHHHHHHHHHCCC--HHHHHHHHHH
Q 001523 300 RKPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 340 (1060)
Q Consensus 300 ~~~d~~~a~~~~~svselL~~Lg~~y~~qGq--yeEAl~~Yeq 340 (1060)
..........+++-.......+..+|...|+ -+.+.+.|.+
T Consensus 510 pamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 510 PAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1111111222233333334456677777787 5556666655
No 163
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.94 E-value=0.0053 Score=76.46 Aligned_cols=229 Identities=11% Similarity=-0.055 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINEREL-GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 187 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~-g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~ 187 (1060)
.....|+......+|.+|..+..++......-. .......+.....-|.+....|++++|+++.+.++...-.. ..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~ 493 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AY 493 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cc
Confidence 344557777788999999999988876654310 11122345555667888889999999999999999864332 23
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 188 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 188 p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
...+.++..+|.+..-+|++++|+.+.+.+.+++++.. .......+.+..+.++..+|+. |.....++....+...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~--~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQV--ARAEQEKAFNLIREQH 569 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999999987652 2223344556678899999933 3333333333333322
Q ss_pred CCC---CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCchhhhhcCCC-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001523 268 GPD---DLRTQDAAAWLEYFESK-AFEQQEAARNGTRKPDASIASKGHL-SVSDLLDYINPSHDTKGRNVSTLKRKTYVA 342 (1060)
Q Consensus 268 g~d---h~~t~~al~~La~l~~k-~~e~AeAl~~~~~~~d~~~a~~~~~-svselL~~Lg~~y~~qGqyeEAl~~YeqAL 342 (1060)
... |......+..+.+.... ....+++. ...........+. ...-.+..|+.++..+|++++|.....+..
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear----~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEAR----LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhh----hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222 22222333333322222 11111111 1111111111111 122233589999999999999999998888
Q ss_pred HHhhhh
Q 001523 343 KVKGNF 348 (1060)
Q Consensus 343 kL~~ki 348 (1060)
.+....
T Consensus 646 ~l~~~~ 651 (894)
T COG2909 646 RLLLNG 651 (894)
T ss_pred HHhcCC
Confidence 776654
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.00014 Score=85.09 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
+....++|..|..++..|++++|+..++..+.. .|+....+-..+.++...++..+|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 455678999999999999999999999985543 3556677788999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.|......+++|.+|...|++.+|+..++..+.-. +.....|..||..|..+|+..+|...+.+.+.+
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 34446778899999999999999999998877633 455677888999999999999998877766554
No 165
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00031 Score=69.72 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p 188 (1060)
.+-.-|..+...|+++.|++.|.++|.++ |..+.+|+|-+..|.-+|+.++|++-+.+|+++. |....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 44556778888999999999999999986 5568899999999999999999999999999974 44455
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 189 NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
....++...|.+|..+|+-+.|..-|+.|.++-
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 667889999999999999999999999987764
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=6.3e-05 Score=82.83 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
+..+|..|.-++..|+|.+|...|..-++.+ ++......++++||.+++.+|+|+.|...|..+++-+ ++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~ 210 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PK 210 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CC
Confidence 3458999999999999999999999988764 6677889999999999999999999999999998854 66
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
++....+++.||.+..++|+.++|...|+++++.
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999885
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=97.91 E-value=0.00097 Score=78.47 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=122.7
Q ss_pred HHH--HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C------CHHHHHHH
Q 001523 64 DGR--QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G------DFNQATIY 129 (1060)
Q Consensus 64 dAr--aLlelA~~yl~qGd---yeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l---G------dyeeAle~ 129 (1060)
++. .+|..|...+.++. .+.|+.+|.+|+... .-+|..+.+|..+|.|++.. | +..+|..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 677 77888888877765 456777888887331 23688899999999999875 2 23445555
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHH
Q 001523 130 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 209 (1060)
Q Consensus 130 yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydE 209 (1060)
.++|+++ .+..+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|.+....|+.++
T Consensus 327 A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 327 LDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHH
Confidence 5555554 2345788999999999999999999999999985 57788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 210 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 210 Aie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
|++++++|+++. + .........+..-.+.....++|+.+|-+
T Consensus 391 a~~~i~~alrLs-----P--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQLE-----P--RRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhccC-----c--hhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999864 1 11222333333313345667788886654
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=4.7e-05 Score=65.57 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 153 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 153 ~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+.+|..++..|+|++|+.+|+++++ ..|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3689999999999999999999988 467789999999999999999999999999999865
No 169
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=0.00072 Score=72.26 Aligned_cols=206 Identities=12% Similarity=0.013 Sum_probs=134.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
.....+..++..|.+|-..|-+.-|..-|.++|.+. |....+++.||..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 345678889999999999999999999999999983 677889999999999999999999999999885
Q ss_pred hCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH-HHH
Q 001523 182 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ-TTL 260 (1060)
Q Consensus 182 ~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq-kAL 260 (1060)
+|..-.+..|.|..++--|+|+-|.+-+.+-.... +.+|.....+ .| -...-+..+|...+. ++.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-----~~DPfR~LWL-Yl---~E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-----PNDPFRSLWL-YL---NEQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-----CCChHHHHHH-HH---HHhhCCHHHHHHHHHHHHH
Confidence 45555677889999999999999988876654432 4444332211 11 123345566655433 222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 261 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 340 (1060)
Q Consensus 261 eI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~Yeq 340 (1060)
..-+.. -........|+.+..+.. .+++..... +.... ...+.+++.+||..|...|+.++|...|+-
T Consensus 195 ~~d~e~-----WG~~iV~~yLgkiS~e~l--~~~~~a~a~--~n~~~---Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 195 KSDKEQ-----WGWNIVEFYLGKISEETL--MERLKADAT--DNTSL---AEHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred hccHhh-----hhHHHHHHHHhhccHHHH--HHHHHhhcc--chHHH---HHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 211111 111111112221111110 111111111 11111 124678999999999999999999999998
Q ss_pred HHHH
Q 001523 341 VAKV 344 (1060)
Q Consensus 341 ALkL 344 (1060)
|+..
T Consensus 263 aian 266 (297)
T COG4785 263 AVAN 266 (297)
T ss_pred HHHH
Confidence 8764
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=6.2e-05 Score=64.81 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
|.+|..++..|+|++|+.+|+++++ ..|....+++.+|.++..+|++++|+.+|++++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999984 46889999999999999999999999999999986
No 171
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.89 E-value=0.0065 Score=59.42 Aligned_cols=230 Identities=22% Similarity=0.194 Sum_probs=149.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
.+.+..+...+..++..... ......+..++..+...+++..+...+..++.. .........+..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 45666666666666544210 124568888999999999999999999998874 112446778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 236 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~-iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~ 236 (1060)
++...+++..|+..+.+++..... . .......+. ++...|++++|..+|.+++... +........+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 170 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEAL 170 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHH
Confidence 999999999999999998874211 1 122233344 8999999999999999996622 1012344555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCchhhhhcCCCcH
Q 001523 237 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF--EQQEAARNGTRKPDASIASKGHLSV 314 (1060)
Q Consensus 237 ~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~--e~AeAl~~~~~~~d~~~a~~~~~sv 314 (1060)
..++..+...+++..|+..+.+++...... .......+........ ..+........... +..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~ 235 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDN 235 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------ccc
Confidence 666666888999999999999998875332 1112222222222221 22111111111100 113
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 315 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 315 selL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
...+..++..+...+++++|...+.++++....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345666777777778899999999988887775
No 172
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.87 E-value=0.0029 Score=70.77 Aligned_cols=142 Identities=19% Similarity=0.126 Sum_probs=98.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-hc-CCCC----hh
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINER-EL-GLDH----PD 147 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG-dyeeAle~yqKALeL~ek-~~-g~d~----p~ 147 (1060)
...+|+++.|..++.++-.+............+..++++|.-....+ +++.|..++++|++++.. .. ...+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887642222234467889999999999999 999999999999999755 11 1122 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
...++..|+.+|...+.++...+ ..+++......++ +++.... ..+-.+. ..++.+++.+.+.+.+.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l~il~-~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKLEILL-KSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHHHHHh-ccCChhHHHHHHHHHHHhc
Confidence 56788999999999998865444 4455555555443 3333221 2222222 2788888888888777643
No 173
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0053 Score=66.52 Aligned_cols=189 Identities=13% Similarity=-0.006 Sum_probs=129.3
Q ss_pred cHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 62 SADGRQLL-ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 62 s~dAraLl-elA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
..+|..++ .-|..|....++..|=..|.++-++..+. ....+.+..|...+.+|.. ++..+|..+++++++++...
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhh
Confidence 33444444 45677888889999999999999887765 2333556677777777765 59999999999999998764
Q ss_pred cCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~l-GdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.. -...+..+..||.+|..- .++++|+.+|++|-+.+.... .....-.++...|..-..+++|.+|+..|++...
T Consensus 107 Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 107 GR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 223455677899999764 999999999999999875421 2233346677788888899999999999998765
Q ss_pred HHHHhcCCC-cHHHH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 220 CNQRLLGPD-HIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 220 i~eeilG~d-hp~~a-~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
..- +.. -...+ .-++.-|.|++...+.-.+...+++..
T Consensus 183 ~s~---~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 183 SSL---DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred Hhc---cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 431 111 01112 233455666666566655544444433
No 174
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.82 E-value=0.024 Score=65.50 Aligned_cols=242 Identities=14% Similarity=0.031 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.-.++.-+.....+|+++.|-.|+.++-+.. . ......+..++.++..+|+++.|..-..+++++.
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------- 183 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELA------G-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT------- 183 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccC------C-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-------
Confidence 3445556788889999999999999987652 1 2345577788999999999999999999988863
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHhCCCC-Chh--------------H
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-------------------LHLTCGPS-HPN--------------T 190 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei-------------------~ee~~g~d-~p~--------------~ 190 (1060)
+....++.....+|...|+|.....++.+.-+. +.+..... ... .
T Consensus 184 -pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 184 -PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred -cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 344566777889999999999888777543321 11111000 000 0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCC
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 270 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~d 270 (1060)
..+...++.-+...|+.++|.+..+++++.. .++. .+..++. ..-++...=++..++.++. .++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~~--l~~~d~~~l~k~~e~~l~~-----h~~ 326 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIPR--LRPGDPEPLIKAAEKWLKQ-----HPE 326 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHhh--cCCCCchHHHHHHHHHHHh-----CCC
Confidence 2234456777889999999999999998753 2222 1111221 2456666655555555544 356
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 271 DLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 271 h~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
++....+++.|++-.+..++....+.... .. ......+..+|.++.++|+..+|...+++++.+...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl-~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAAL-KL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHH-hc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 67777777777666665555555554211 11 122355788999999999999999999999955443
No 175
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.80 E-value=0.00016 Score=81.54 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
..+..|.++...|++++|++++.+. ...++...+-.+|..+++++.|.+.++.+.++ ..|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 4455567777788888887776543 22345566777888899999998877765433 122
Q ss_pred hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 147 DTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lG--dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
...+....|++.+..| .+.+|..+|++..+ .......+++.+|.++..+|+|++|.+.+++++...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--- 231 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--- 231 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---
Confidence 2333334444555555 58888888877433 122345667889999999999999999988876532
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHcCCCCHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDA 277 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeE-Aie~lqkALeI~rkllg~dh~~t~~a 277 (1060)
+....++.|++.+...+|+..+ +.+++.+.... .+.|+.+...
T Consensus 232 -----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~~~~ 275 (290)
T PF04733_consen 232 -----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLVKDL 275 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHHHHH
Confidence 3345677788888888888844 44444443222 5677755433
No 176
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.79 E-value=0.0038 Score=75.10 Aligned_cols=268 Identities=11% Similarity=-0.012 Sum_probs=161.3
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------c------CCCChhHHHHHHHHH
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV---------------------C------GPYHRMTAGAYSLLA 114 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~eki---------------------l------g~d~p~~A~A~~~LA 114 (1060)
...+..+..+|..|...|.|+.|...|++++.....+ . +.+..+....-..++
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 3346677779999999999999999999998752111 0 000000000111111
Q ss_pred ------------------------------HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001523 115 ------------------------------VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 164 (1060)
Q Consensus 115 ------------------------------~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGd 164 (1060)
.+-...|+..+-+..|.+|+....-... .......+..+|.+|...|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCc
Confidence 1111235566666666666654322111 11245678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----hcCCCcHHHH------H
Q 001523 165 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR----LLGPDHIQTA------A 234 (1060)
Q Consensus 165 yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee----ilG~dhp~~a------~ 234 (1060)
.+.|...|++|...--. .-.+++.+|++.|.+.....+++.|+.+.+.|...-.. .+...++... .
T Consensus 403 l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred HHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999875211 23456889999999999999999999999998764321 2222333322 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcH
Q 001523 235 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 314 (1060)
Q Consensus 235 a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~sv 314 (1060)
++..++.+....|-++.-...|.+.+++. -..| .+..+.+.+........+++....+.+... ..+.+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLr-----iaTP---qii~NyAmfLEeh~yfeesFk~YErgI~LF----k~p~v 546 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLR-----IATP---QIIINYAMFLEEHKYFEESFKAYERGISLF----KWPNV 546 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccC----CCccH
Confidence 34445555555666666666666666553 1223 344555666666666666665544443322 23445
Q ss_pred HHHHHHH-HH--HHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 315 SDLLDYI-NP--SHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 315 selL~~L-g~--~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
.++|... .. ....-.+.+.|..+|+|||+.++-
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 5555332 11 123335677899999999997663
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.75 E-value=0.00036 Score=81.73 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHH
Q 001523 112 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 191 (1060)
Q Consensus 112 ~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a 191 (1060)
.|-.++...++++.|+.+|++..+. .|. +...|+.+|...++-.+|++.+.+++.. .+...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3445556678999999888886543 233 4556899999999999999999999963 34457
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
..+...|..+...++++.|+.+.++|+.+. |....+|+.||.+|..+|+|+.|+..+..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 888899999999999999999999999976 66778899999999999999999876653
No 178
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=0.00071 Score=72.32 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=121.8
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
....+|..++++|..|-..|-..-|+--|.++|.+ .|..+.+++.||..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence 34557888999999999999999999999999987 4788999999999999999999999999999887
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHH-------------HHHHHHHHHHH----
Q 001523 140 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-------------ATYINVAMMEE---- 202 (1060)
Q Consensus 140 ~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a-------------~a~~nLA~iy~---- 202 (1060)
+|..-.+..|.|..++.-|+|.-|.+-+.+-.+. .+.+|... .+..+|..-+.
T Consensus 129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH
Confidence 3445567788899999999999998877654432 11222111 11112222111
Q ss_pred ----------HCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 203 ----------GLGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 203 ----------~lGdydEAie~yekALei~eeilG~dhp----~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
.+|+..+ ..+++++.+.. .+.. ....+|+.||..|...|+.++|..+|+-|+.
T Consensus 199 e~WG~~iV~~yLgkiS~-e~l~~~~~a~a-----~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWGWNIVEFYLGKISE-ETLMERLKADA-----TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhhHHHHHHHHhhccH-HHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1122111 11222222221 1222 2346788999999999999999999986654
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00045 Score=76.23 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 189 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~ 189 (1060)
+|+.|.-++..|+|..|...|+.-++.+ +.......+++.||.+++.+|+|+.|..+|..+.+-+ ++++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 7899999999999999999999998865 5667788999999999999999999999999988842 45677
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
...+++.||.+...+|+.++|...|+++++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 78999999999999999999999999998866
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=97.71 E-value=0.00052 Score=80.68 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 001523 109 AYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRAL 176 (1060)
Q Consensus 109 A~~~LA~ly~~lGd---yeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~l---------GdyeeAleyyekAL 176 (1060)
.++..|...+..+. .++|+.+|.+|+... .-.|..+.+|..+|.|++.. .+..+|.+..++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 44666776666553 567777888887321 23577889999999998765 23456677777777
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 001523 177 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 256 (1060)
Q Consensus 177 ei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~l 256 (1060)
++ ++..+.++..+|.++...++++.|+..|++|+.+. |..+.+++..|.++...|+.++|.+++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 34457888999999999999999999999999875 677889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001523 257 QTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA 295 (1060)
Q Consensus 257 qkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl 295 (1060)
++|+++ .|..........|+..+.....+.+-++
T Consensus 396 ~~alrL-----sP~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 396 DKSLQL-----EPRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred HHHhcc-----CchhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 999987 4555555555666633333333333333
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.003 Score=66.37 Aligned_cols=161 Identities=17% Similarity=0.032 Sum_probs=115.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
+....+.=|.+.+.+-..+.+++. -+..-.+.||..+..+|++.+|..+|++++.-. .......
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~A---------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~ 126 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIA---------PTVQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAM 126 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHH
Confidence 334444445555555455554442 223456789999999999999999999998742 1223556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 231 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~ 231 (1060)
+..++...+..+++..|...+++..+.-- ..........+|+.|..+|++.+|...|+.++..+ +. .
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg--~ 193 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PG--P 193 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC--H
Confidence 88899999999999999999998877421 11123445678999999999999999999999876 11 1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+.++ .+..+.++|+.++|...|....+..
T Consensus 194 ~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 194 QARIY--YAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHH--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence 23333 5788889999999988776665544
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00064 Score=79.61 Aligned_cols=119 Identities=24% Similarity=0.187 Sum_probs=98.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 150 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ 150 (1060)
+-..+...++++.|+.+|++..+. +|. +...||.++...++..+|+..+.+++.. .+....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445556678899999888886532 233 5567899999999999999999999954 234477
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
.+...|..+...++++.|++++++|..+ .|....+|+.||.+|..+|+|++|+..+..
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8889999999999999999999999985 466788999999999999999999977764
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=97.68 E-value=0.00026 Score=73.11 Aligned_cols=104 Identities=12% Similarity=-0.013 Sum_probs=86.7
Q ss_pred hcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 58 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 58 i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
.+-+...-..+|..|.-++.+|++++|..+|+-..-+ ++...+.+..||.++..+++|++|+..|-.|..+.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445666778999999999999999999999766532 34556788999999999999999999999998763
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
. ++ ....+.+|.||+.+|+.+.|+.+|+.++.
T Consensus 102 ~-----~d---p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 K-----ND---YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred c-----CC---CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2 22 23478899999999999999999999987
No 184
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.68 E-value=0.0011 Score=84.66 Aligned_cols=214 Identities=14% Similarity=0.006 Sum_probs=150.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
.+|..+..|...-..+...++.++|...+++||....-..+......+.+|.||=..| |.-+.-.+.|++|.+++.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd- 1528 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD- 1528 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc-
Confidence 3577777777777778889999999999999998651111122345677777777766 455677788888888642
Q ss_pred hCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 182 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 182 ~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
....|..|.-+|..-+++++|.++|+..++-+. +....|..+|..++.+.+-+.|...+++||+
T Consensus 1529 --------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 --------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred --------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 246788899999999999999999999888662 3456777789999999999999999999998
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 262 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 341 (1060)
Q Consensus 262 I~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqA 341 (1060)
.+.+ ..|.....-.+.|.+-+ ...+..+.++.+... .++.-.++|.-+...-.+.|+.+.+...|+++
T Consensus 1593 ~lPk---~eHv~~IskfAqLEFk~-GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPK---QEHVEFISKFAQLEFKY-GDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcch---hhhHHHHHHHHHHHhhc-CCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 7643 34555554444443322 222333333333222 23344567777777778888888899999988
Q ss_pred HHHhhh
Q 001523 342 AKVKGN 347 (1060)
Q Consensus 342 LkL~~k 347 (1060)
+.+.-.
T Consensus 1661 i~l~l~ 1666 (1710)
T KOG1070|consen 1661 IELKLS 1666 (1710)
T ss_pred HhcCCC
Confidence 876544
No 185
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.64 E-value=0.024 Score=70.34 Aligned_cols=198 Identities=17% Similarity=0.097 Sum_probs=137.4
Q ss_pred CCcHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTAL-DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl-~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
....+++..+.+|.+++ ...++++|+.++.+++.++++ .........+...++.+|...+... |+.+++++++.++
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 34568999999999998 789999999999999988765 1222334566778899999988777 9999999999886
Q ss_pred HhcCCCChhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 139 RELGLDHPDTMKSYGDL-AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 139 k~~g~d~p~~a~ay~nL-A~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
.. .+.....++..+ ..++...+++..|++.++....+..... +....+.+....|.+....+..+++++.++++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 222333444444 3344344899999999999998776432 33334455556678888889899999999999
Q ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHH--HHhcCChhHHHHHHHHHHHHHHH
Q 001523 218 LKCNQRL--LGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 218 Lei~eei--lG~dhp~~a~a~~nLA~l--y~~lGdyeEAie~lqkALeI~rk 265 (1060)
....... .+..++....++..+-.+ +...|++..+...+++.-+.+..
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8777644 122244444444444433 45677877887777655554433
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.63 E-value=0.00019 Score=84.17 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
..|....+++|+|.+|+.+|+|++|+.+|++|+++ .+++.....+++|+|.+|..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999996 3344433467999999999999999999999999996
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.62 E-value=0.00069 Score=68.54 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...++..|...+..|+|++|++.|+.....+ +..+....+...||.+|+..++|++|+..+++.+++. +.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 5678999999999999999999998876543 4556677899999999999999999999999999984 77
Q ss_pred ChhHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 178 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGd---------------yeeAleyyekALei 178 (1060)
|+..-.+++..|.+++.+.. ..+|...|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 88899999999999998876 66677777766664
No 188
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.61 E-value=0.007 Score=75.46 Aligned_cols=264 Identities=14% Similarity=-0.029 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~eki-lg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
+..+..|.....+.+|.+|..+..++......- .+......+.+....|.+....|++++|+++.+.++...-. ..
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AA 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---cc
Confidence 345556888889999999999988887654321 00112234566677888999999999999999999987533 22
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
....+.++..+|.+..-+|++++|+.+.+++.++.++.. .......+.+..+.++..+|+...|. -.++.......
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 233567789999999999999999999999999887753 23444567778899999999433332 22222222221
Q ss_pred cCCC---cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001523 225 LGPD---HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 301 (1060)
Q Consensus 225 lG~d---hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~ 301 (1060)
.... |.....++..+..++.+ ++.+..-....+.+........ .........|+.+....++.+++.......
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~-~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQP-LLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccch-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111 22233444344444433 6777666666666643332222 222222235555555555555554432221
Q ss_pred CchhhhhcCCCcHHHHHHHHHHH-HHHCCCHHHHHHHHHH
Q 001523 302 PDASIASKGHLSVSDLLDYINPS-HDTKGRNVSTLKRKTY 340 (1060)
Q Consensus 302 ~d~~~a~~~~~svselL~~Lg~~-y~~qGqyeEAl~~Yeq 340 (1060)
.........+..+....+.+..+ ...+|++.+|.....+
T Consensus 645 ~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 645 ERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11111121233333333333333 4788999998887766
No 189
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.56 E-value=0.0091 Score=71.97 Aligned_cols=184 Identities=17% Similarity=0.074 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----h
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER----E 140 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek----~ 140 (1060)
...+...|..|...|+++.|..+|++|.+.-- +.-.+.+.+|..-|..-....+++.|+.+.++|..+-.. .
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 45667789999999999999999999986521 122456888999999999999999999999999765211 1
Q ss_pred cCCCChhH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001523 141 LGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 214 (1060)
Q Consensus 141 ~g~d~p~~------a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~y 214 (1060)
+...++-. ..++..++.+....|-++.....|++.+++.- .+..+-.|.|..+....-|++|.+.|
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222322 34455566666667777777777777777521 12345567888888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 215 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 215 ekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
++.+.++.= +.-.++...|......-..--..+.|..+|++||+.+
T Consensus 535 ErgI~LFk~---p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 535 ERGISLFKW---PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred HcCCccCCC---ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 888776621 1222333444333333333346677888888887754
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.53 E-value=0.00031 Score=82.37 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=63.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
..|..+.+++++|.+|+.+|+|++|+..|++||++. +++.....+|+|+|.+|..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357788999999999999999999999999999983 444333367999999999999999999999999996
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0024 Score=71.36 Aligned_cols=119 Identities=20% Similarity=0.135 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYL 178 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lG---dyeeAleyyekALei 178 (1060)
.+|..+.-|..||.+|+.+|++..|...|.+|+++. ++...++..+|.+++.+. .-.+|...+++++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 357888999999999999999999999999999984 334566777887777654 457889999999984
Q ss_pred HHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001523 179 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 240 (1060)
Q Consensus 179 ~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA 240 (1060)
++....+++.||..++..|+|.+|...++..++.. ..+.+....+-..++
T Consensus 223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia 272 (287)
T COG4235 223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIA 272 (287)
T ss_pred --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHH
Confidence 45567889999999999999999999999988865 344444443333333
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00086 Score=70.93 Aligned_cols=100 Identities=19% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 231 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~ 231 (1060)
+-.-|.-++..|+|++|..-|..||+++.... ......+|.|.|.++..++.++.|++-.-+|+++. +.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------ch
Confidence 33457778899999999999999999876543 24456788899999999999999999999999986 56
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+..++...|.+|.++..|++|++-|++.+++
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 6778888999999999999999999998876
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0033 Score=68.99 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
.......+.++.+++-.|.|.-...++.+.++. +.+........||.+.++.||.+.|..+|++.-+...++.
T Consensus 174 KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 174 KRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 345677888899999999999999999998863 2345566778899999999999999999998776655443
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+.. ....+..+.+.+|...++|..|...|.+++.. ++..+.+-++-|.|+..+|+..+|++.++.++.+.
T Consensus 247 ~~q--~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 247 GLQ--GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred ccc--hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 322 35667889999999999999999999888763 44556778899999999999999999999988865
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Q 001523 222 QRLLGPDHIQTAASYHAIAIALS 244 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~ 244 (1060)
+.+...-...++|..+|.
T Consensus 317 -----P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 -----PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred -----CccchhhhHHHHHHHHHH
Confidence 344434445556655543
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.50 E-value=0.00058 Score=70.58 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
-........+..|.-++..|++++|..+|+-...+ ++.....+..||.++..+++|++|+..|..|..+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34567788999999999999999999999765543 123456689999999999999999999999987632
Q ss_pred hCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 182 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 182 ~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
+++ ...+..|.||..+|+..+|+.+|+.++.
T Consensus 103 ----~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 ----NDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----CCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 222 3467899999999999999999999887
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0018 Score=71.91 Aligned_cols=147 Identities=14% Similarity=0.045 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------H
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL----------D 135 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKAL----------e 135 (1060)
..+-.+|.+|+...+|..|-.+|++.-.+ +|.........|..++..+.|..|+....... +
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 34556799999999999999999987655 46666666667777777777777776544332 2
Q ss_pred HHHHhc--CCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH
Q 001523 136 INEREL--GLD------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 201 (1060)
Q Consensus 136 L~ek~~--g~d------------~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy 201 (1060)
+-..+. ..| ....+...++.|.+.++.|+|+.|++-|+.|++. +...+ -.-+++|.++
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqp---llAYniALaH 188 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQP---LLAYNLALAH 188 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCc---hhHHHHHHHH
Confidence 211110 000 1235667889999999999999999999999985 22333 3447899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 001523 202 EGLGNVHVALRYLHKALKCNQRLLGPDHIQT 232 (1060)
Q Consensus 202 ~~lGdydEAie~yekALei~eeilG~dhp~~ 232 (1060)
+..|+++.|+++.-+.++.-- .+||..
T Consensus 189 y~~~qyasALk~iSEIieRG~----r~HPEl 215 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGI----RQHPEL 215 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhh----hcCCcc
Confidence 999999999999998887542 356643
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.46 E-value=0.0019 Score=65.49 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
....++.-|...+..|+|.+|++.|+....-+ +-.+....+...||.+|+..++|++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 35678889999999999999999998876543 334556788999999999999999999999999986 57
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 001523 186 SHPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 221 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lGd---------------ydEAie~yekALei~ 221 (1060)
.|+.+-.+++..|.+++.+.. ..+|...|++.+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 888889999999999998876 667777777777655
No 197
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0017 Score=68.86 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+..+-..|.-++..|+|++|..-|..||+++... .......+|.+.|.++..++.++.|+..+.+|+++.
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------ 164 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------ 164 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------
Confidence 35566677999999999999999999999997543 224567788999999999999999999999999983
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
|....++...|.+|..+..|++|++-|.+.+++
T Consensus 165 --pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 --PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred --chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 556778888999999999999999999999885
No 198
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0071 Score=70.92 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM--TAGAYSLLAVVLYHTGDFNQATIYQQKALD-INERE 140 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~--~A~A~~~LA~ly~~lGdyeeAle~yqKALe-L~ek~ 140 (1060)
.+..++.++..++..|+|..|.+++...- +.+..-+...+. ...++++||.+++.+|.|..+..+|.+||+ .+.++
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999988775432 221111111222 355678999999999999999999999996 44443
Q ss_pred cCC---------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH
Q 001523 141 LGL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 202 (1060)
Q Consensus 141 ~g~---------d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~ 202 (1060)
... .......+++|+|..|...|+.-.|.++|.++...+.. . ...|..||.|+.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----n---PrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----N---PRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----C---cHHHHHHHHHHH
Confidence 221 11134678999999999999999999999999998754 1 245566666654
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.028 Score=62.10 Aligned_cols=188 Identities=15% Similarity=0.077 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHH-----------HHHhcCCCChhHHHHHHHHHHHH
Q 001523 63 ADGRQLLESSKTALDKGKLE--------------DAVTYGTKALAK-----------LVAVCGPYHRMTAGAYSLLAVVL 117 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdye--------------EAi~~fekALel-----------~ekilg~d~p~~A~A~~~LA~ly 117 (1060)
.+......+++.|+.+|.|. .|+..+...++. .+.+.+.........+..-|.+|
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 45556666777788887764 344444333221 11111122222334556668899
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 001523 118 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 197 (1060)
Q Consensus 118 ~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nL 197 (1060)
.+-|++++|+....+...+ .+...--.++.++.+++-|...++++.++... .++..|
T Consensus 119 ~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQL 175 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQL 175 (299)
T ss_pred hcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHH
Confidence 9999999999988773322 23333446777888999999998888876322 233445
Q ss_pred HHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHH
Q 001523 198 AMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 273 (1060)
Q Consensus 198 A~iy~~----lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~ 273 (1060)
|..|.. .+++.+|.-+|++.-+ . .+.+...+..+|.|+..+|+|++|...++.+|.- ...++.
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~-------k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d~~dpe 242 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSE-------K-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----DAKDPE 242 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhc-------c-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----cCCCHH
Confidence 544443 3456666666665432 1 2345667888999999999999999999999875 345566
Q ss_pred HHHHHHHHHHHHH
Q 001523 274 TQDAAAWLEYFES 286 (1060)
Q Consensus 274 t~~al~~La~l~~ 286 (1060)
++..+..++....
T Consensus 243 tL~Nliv~a~~~G 255 (299)
T KOG3081|consen 243 TLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHhC
Confidence 6555544444433
No 200
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.40 E-value=0.00074 Score=75.91 Aligned_cols=95 Identities=21% Similarity=0.144 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
+-+.|+.|+.+|.|++|+.+|.+++.. +|.....+.+.|.+|+.+..|..|..-+..|+.+.. .
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------L 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------H
Confidence 456799999999999999999999865 466777889999999999999999999999999853 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
...+|...|.+-..+|...+|.+-|+.+|++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 6788999999999999999999999999986
No 201
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.37 E-value=0.053 Score=66.01 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyek------ALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
..|-..|.+|.+..++++|++||++ |+++.+-.+ .......--..|.-+...|+++.|+.+|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 4456677888888899999999875 444443322 2233444455677788888888888777544322111
Q ss_pred ---hcCC--------------CcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 224 ---LLGP--------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 224 ---ilG~--------------dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
..+. +.......|-.+|.-|...|+|+-|.++|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 1111 0001112344577778888888888777654
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0042 Score=69.49 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=90.5
Q ss_pred HhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 001523 57 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKA 133 (1060)
Q Consensus 57 ~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG---dyeeAle~yqKA 133 (1060)
++.....+++.+..+|.+|+.+|++..|...|.+|+++. +.....+..+|.+++.+. .-.+|...++++
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 455667778899999999999999999999999999883 556678888888888764 456888999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 134 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 134 LeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
+.+ ++....+++.||..++..|+|.+|+..++..++.
T Consensus 220 l~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 220 LAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred Hhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 886 3456788999999999999999999999999886
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.33 E-value=0.008 Score=72.25 Aligned_cols=180 Identities=13% Similarity=-0.026 Sum_probs=118.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 77 DKGKLEDAVTYGTKALAKLVAVCGPYHRMT---AGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 77 ~qGdyeEAi~~fekALel~ekilg~d~p~~---A~A~~~LA~ly~~----lGdyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
-.||-+.+++++.++.+. ..+ ..+.. .-.|+..-..+.. ....+.|.+.+...+.. .|+-.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence 458888888888887642 111 11111 1111111111111 23445565555555544 34556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
..+...|.++...|+.++|++.|++++....+. ......+++.+|.++..+.+|++|.++|.+.++.. .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------K 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------c
Confidence 678899999999999999999999988543221 12234678899999999999999999999888742 2
Q ss_pred HHHHHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001523 230 IQTAASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDLRTQDAAA 279 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdy-------eEAie~lqkALeI~rkllg~dh~~t~~al~ 279 (1060)
...+...+..|.|+...|+. ++|..+|+++-.+..+..|..-+.-..+..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~R 393 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIR 393 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Confidence 34555667789999999999 788888888877777666655443333333
No 204
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.33 E-value=0.028 Score=72.74 Aligned_cols=174 Identities=14% Similarity=0.020 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
..+..++..-..+++.++.++|++.+++||....-.-+..-.....+|.+|=.. -|.-+.-.+.|++|.+++.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd---- 1528 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCD---- 1528 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcc----
Confidence 334455555666778999999999999999764100001111233444444443 4666777788888888752
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
...+|..|.-+|..-+.+++|.++|++.++-+.+ ....|..+|..++.+.+-+.|..++++||....
T Consensus 1529 -----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred -----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 3567889999999999999999999999987642 356788899999999999999999999999874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 223 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 223 eilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+ .+|. ......|.+.++.|+-+.+..+|+..+..
T Consensus 1596 k---~eHv---~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1596 K---QEHV---EFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred h---hhhH---HHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 3 2343 44556689999999999999988877664
No 205
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.027 Score=62.59 Aligned_cols=261 Identities=13% Similarity=0.011 Sum_probs=151.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAK----LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL--- 141 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel----~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~--- 141 (1060)
+++|+......++++|+..|.+.|.. -++. ....-.+...|+.+|...|++..--+......+.+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 56788888899999999999998865 1211 123345677899999999987654444433332222110
Q ss_pred --------------CCCC-hh--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 142 --------------GLDH-PD--------------------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 142 --------------g~d~-p~--------------------~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
..+. ++ ....-..+..+|+..|.|.+|+....-.+.-+++.. +
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--D 160 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--D 160 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--C
Confidence 0010 00 112224566777778888888877777766666543 4
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
.+.....+..-..+|....+..++...+..|...+...+-+.. ..+..-..-|.+.+...+|.-|..||-++++-+...
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq-lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l 239 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ-LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL 239 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH-HHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence 4555556666677777777777777777766666544433211 122223334566677889999999999999876433
Q ss_pred cCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
Q 001523 267 LGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVA 342 (1060)
Q Consensus 267 lg~dh~~t~~al~~La--~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y--~~qGqyeEAl~~YeqAL 342 (1060)
..+......+.++. .+.....+.-.++........ .......+++..++.+| +...+|..|+.-|..-+
T Consensus 240 --~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~-----~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 240 --KMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK-----HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred --cchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh-----hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 44444433333322 222223333333322211111 01123456666777777 55677888888887655
Q ss_pred H
Q 001523 343 K 343 (1060)
Q Consensus 343 k 343 (1060)
.
T Consensus 313 ~ 313 (421)
T COG5159 313 H 313 (421)
T ss_pred c
Confidence 4
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.27 E-value=0.0046 Score=69.84 Aligned_cols=139 Identities=24% Similarity=0.176 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG--dyeeAle~yqKALeL~ek~~g~ 143 (1060)
+.+.....+|+..++++.|.+.++.+.++ ..+..-+....|++....| .+.+|...|++..+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------- 196 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------- 196 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------
Confidence 34444678899999999999888776432 2233333444455555556 588899888885332
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQ 222 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdy-dEAie~yekALei~e 222 (1060)
.+.....++.+|.+++.+|+|++|.+.+++++. ..+....++.|++.+...+|+. +.+.+++.+.....
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~- 266 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN- 266 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT-
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC-
Confidence 233567799999999999999999999999875 2345577899999999999998 55666766654433
Q ss_pred HhcCCCcHHHH
Q 001523 223 RLLGPDHIQTA 233 (1060)
Q Consensus 223 eilG~dhp~~a 233 (1060)
++|+.+.
T Consensus 267 ----p~h~~~~ 273 (290)
T PF04733_consen 267 ----PNHPLVK 273 (290)
T ss_dssp ----TTSHHHH
T ss_pred ----CCChHHH
Confidence 6676543
No 207
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.15 Score=60.14 Aligned_cols=247 Identities=15% Similarity=0.068 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
..+..|..-..++++..|...|++||+. + ......+...+.+-+.......|...+.+|+.++ |
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--------P 138 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--------P 138 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------c
Confidence 4445566666777777777777777743 1 2334456666667777777777777777777664 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHHhCCCCChhHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL--------------------------LHLTCGPSHPNTAATYINVAMM 200 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei--------------------------~ee~~g~d~p~~a~a~~nLA~i 200 (1060)
..-..++..-.+--.+|+..-|...|++-+.. +++.. .-||. ...+...|..
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV-~~HP~-v~~wikyarF 216 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV-LVHPK-VSNWIKYARF 216 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-eeccc-HHHHHHHHHH
Confidence 23344444444444555555555555543322 11110 12443 4567788888
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 001523 201 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 280 (1060)
Q Consensus 201 y~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~ 280 (1060)
-...|+..-|...|..|++.. | +.......+...|..-..+..++.|...|+-||+.. .. ..+..+...
T Consensus 217 E~k~g~~~~aR~VyerAie~~----~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk--~raeeL~k~ 285 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFL----G-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PK--GRAEELYKK 285 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc--ccHHHHHHH
Confidence 889999999999999998876 2 233344555566777777888888888888877653 11 122333333
Q ss_pred HHHHHHHHHHHH---HHHHhcCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 281 LEYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 343 (1060)
Q Consensus 281 La~l~~k~~e~A---eAl~~~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALk 343 (1060)
+..+..+.++.. .++. ..........-..++.--+.+...-.+-...|+.+.-.+.|++|+.
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv-~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIV-GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHHHHHHhcchhhhHHHHh-hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 333333332221 1111 1111111112222333334444444555777999998899998875
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.25 E-value=0.077 Score=61.28 Aligned_cols=232 Identities=12% Similarity=-0.061 Sum_probs=140.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 150 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ 150 (1060)
.++..+..|+|+.|.+-|+..+.- .....--+..|-.--..+|+++.|..|-.++.... +...+
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~d--------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~W 189 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLDD--------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPW 189 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC--------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCch
Confidence 356666778888888877766632 22222223333333456788888888888887654 33445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~--a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
+....-...+..|+|+.|+++.+....... .+.+-.+... .+..-+... ..-+...|.+...+++++.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~------- 259 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA------- 259 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC-------
Confidence 555555667788999999999887765422 2222222222 222222222 2345777888888887765
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCchhh
Q 001523 229 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGTRKPDASI 306 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~--l~~k~~e~AeAl~~~~~~~d~~~ 306 (1060)
++..-.-..-+..|+..|+..++-..++.+.+. .-|+.++.++....- .-....+.++.+. ..
T Consensus 260 -pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~ar~gdta~dRlkRa~~L~--sl------ 324 (531)
T COG3898 260 -PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRARSGDTALDRLKRAKKLE--SL------ 324 (531)
T ss_pred -CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHhcCCCcHHHHHHHHHHHH--hc------
Confidence 333444455688999999999999999988875 678887666554321 1111111111111 11
Q ss_pred hhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 307 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 307 a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
.+...+.....+.....-|+|..|...-+.+..+..+
T Consensus 325 ----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 325 ----KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred ----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 1233455666777778889999988887777766553
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.027 Score=62.11 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
..+.+.++.++.-+|+|.-.+..+.+.++. +.+........||.+.++.||.+.|..||++.-+....+.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 357788899999999999999999998873 22334455678999999999999999999987765544432
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
-........+.+.+|...++|..|...|.+++... +..+.+..+-|.|+..+|+..+|++.++.++++
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22345667889999999999999999999887643 344566778899999999999999999888876
No 210
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.23 E-value=0.094 Score=65.17 Aligned_cols=272 Identities=15% Similarity=0.061 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC---------------hhHHHHHHHHHHHHHHcCCHHHHHH
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH---------------RMTAGAYSLLAVVLYHTGDFNQATI 128 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~---d~---------------p~~A~A~~~LA~ly~~lGdyeeAle 128 (1060)
.++-.|..++..+..+.|.+++.++++..++.... .. .....++..++.+...++++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 34445777888888889999999999998876510 00 0123455677888888999999999
Q ss_pred HHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHHHHHC
Q 001523 129 YQQKALDINERELGL-DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC---GPSHPNTAATYINVAMMEEGL 204 (1060)
Q Consensus 129 ~yqKALeL~ek~~g~-d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~---g~d~p~~a~a~~nLA~iy~~l 204 (1060)
....+.....+.... .......+++..|..+...|+.+.|+.+|.+.+....... +........+..|+..++...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 999888876543221 1223567788999999999999999999986553332211 122333456677888888877
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC-CCcHH--HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHH
Q 001523 205 GNVHVALRYLHKALKCNQRLLG-PDHIQ--TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL-RAKLGPDDLRTQDAAAW 280 (1060)
Q Consensus 205 GdydEAie~yekALei~eeilG-~dhp~--~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~-rkllg~dh~~t~~al~~ 280 (1060)
+.-.....-+.++++..+.... ..... .+.++...+.-....-.+.++..+++++++.+ ... +.... +..++..
T Consensus 463 ~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~-~n~~l-~~~~L~l 540 (608)
T PF10345_consen 463 SSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL-GNSQL-LAILLNL 540 (608)
T ss_pred cccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh-ccchH-HHHHHHH
Confidence 7654432223333332211111 11112 22222222222223345568999999999998 433 33222 2222222
Q ss_pred HH--HHHHHHHHHHHHHHh----cCCCCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 281 LE--YFESKAFEQQEAARN----GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 281 La--~l~~k~~e~AeAl~~----~~~~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
+. ++....++..+.... ..+.++ ..+.....-+-..+...|..+|+.++|.....+.-++
T Consensus 541 m~~~lf~~~~~e~~~~s~~a~~~A~k~~d----~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 541 MGHRLFEGDVGEQAKKSARAFQLAKKSSD----YSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 22 221222222222111 111100 0111111223345677789999999999988876554
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.19 E-value=0.053 Score=64.48 Aligned_cols=136 Identities=19% Similarity=0.097 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
+.-.++.....+..+...-+++.++||++. ++.+.+|..||.-. .....+|+++|++|++..+..++.+.
T Consensus 169 r~Aq~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 169 RPAQEIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhh
Confidence 344444555577889999999999999883 66778888777532 34478999999999998776654321
Q ss_pred -----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHH
Q 001523 146 -----------------PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 208 (1060)
Q Consensus 146 -----------------p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdyd 208 (1060)
.-...+...||.|..++|+.++|++.++..++.. ...+...++.+|..++..++.|.
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHH
Confidence 1124566789999999999999999999988742 12235678999999999999999
Q ss_pred HHHHHHHHH
Q 001523 209 VALRYLHKA 217 (1060)
Q Consensus 209 EAie~yekA 217 (1060)
++..++.+-
T Consensus 313 d~q~lL~kY 321 (539)
T PF04184_consen 313 DVQALLAKY 321 (539)
T ss_pred HHHHHHHHh
Confidence 999888773
No 212
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.18 E-value=0.023 Score=55.97 Aligned_cols=121 Identities=20% Similarity=0.114 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 106 TAGAYSLLAVVL--YHTGDFNQATIYQQKALDINERELGLDHP----DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 106 ~A~A~~~LA~ly--~~lGdyeeAle~yqKALeL~ek~~g~d~p----~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
.+.+|..|+..- +.-|.|++|..-+++|+++.+.+...... -.+-++..|+..+..+|+|++++....++|..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 455666665544 44589999999999999998665433211 246778899999999999999999999999998
Q ss_pred HHhCCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001523 180 HLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 180 ee~~g~d---~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG 226 (1060)
.+..... -...+.+-++.|..+..+|+.++|+..|+.+-+...+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7653221 1234556678899999999999999999999887765543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0017 Score=56.89 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 155 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 155 LA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
|..+|...++|++|++++++++.+ +|.....+..+|.+|..+|++++|++.|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457899999999999999999996 45567889999999999999999999999999865
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.15 E-value=0.00068 Score=52.74 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHH
Q 001523 233 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 273 (1060)
Q Consensus 233 a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~ 273 (1060)
+.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999999974
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0071 Score=68.22 Aligned_cols=165 Identities=15% Similarity=-0.011 Sum_probs=127.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 150 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ 150 (1060)
.+.+++..|++.+|...+.+.|+ ++|....++..--.+++.+|+...-...+++.+... ..+.|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 45556677777777777777764 456666677777788888999998888888877643 345565677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 230 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp 230 (1060)
+...++..+...|-|++|.+..++++++ ++..+.+...++.++...|++.++.++..+.-...+.. ..
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hH
Confidence 7788899999999999999999999986 34456778889999999999999999998876554321 12
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 231 QTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 231 ~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
.....|...|.++...+.|+.|++.|.+-
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 23455677888899999999999999853
No 216
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.14 E-value=0.00078 Score=52.41 Aligned_cols=41 Identities=39% Similarity=0.522 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 231 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~ 231 (1060)
+.++.+||.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56889999999999999999999999999999999999874
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.015 Score=69.98 Aligned_cols=132 Identities=20% Similarity=0.032 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001523 80 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 159 (1060)
Q Consensus 80 dyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY 159 (1060)
+.+.|.+++...++. +|.-+-.+...|.++...|+.++|++.|++++....... .-...+++.+|.++
T Consensus 248 ~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCH 315 (468)
T ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHH
Confidence 445555555555433 477778899999999999999999999999885432211 12346789999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcH
Q 001523 160 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 230 (1060)
Q Consensus 160 ~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdy-------dEAie~yekALei~eeilG~dhp 230 (1060)
..+.+|++|.++|.+.++. +....+...+..|.|+...|+. ++|.++|.++-.+..+..|...|
T Consensus 316 ~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999998773 3444567778899999999999 88888888887777665554433
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0019 Score=56.59 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=56.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 001523 197 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 276 (1060)
Q Consensus 197 LA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~ 276 (1060)
|..+|...++|++|++++++++.+. |.....+..+|.++..+|++.+|...|+++++. .+++.....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHHH
Confidence 4678999999999999999999875 445677888999999999999999999999976 456554443
Q ss_pred H
Q 001523 277 A 277 (1060)
Q Consensus 277 a 277 (1060)
+
T Consensus 68 ~ 68 (73)
T PF13371_consen 68 L 68 (73)
T ss_pred H
Confidence 3
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.13 E-value=0.043 Score=60.55 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
+..+++-|...+..|+|++|.++|+..... -+..+..-.++..++.++++.+++++|+.++++-+... +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 556788888889999999999999987753 23445567888999999999999999999999988876 78
Q ss_pred cHHHHHHHHHHHHHHHhc-----CChh---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001523 229 HIQTAASYHAIAIALSLM-----EAYP---LSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~l-----Gdye---EAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~ 300 (1060)
|+....+++..|.++... .|.. +|+..|++.++-+ |+...+..+...+.++....
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~L------------ 166 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDAL------------ 166 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHH------------
Confidence 888888888888887643 2222 2333333333322 44444444444443332221
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 301 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 301 ~~d~~~a~~~~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL 344 (1060)
+.--..+|..|.+.|.+..|+..++..++-
T Consensus 167 --------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 167 --------------AGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred --------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 112234566666666666666666665554
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0026 Score=69.04 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
..+..+-+.|+.|+...+|..|+..|.+||.+ .|..+..|.+.|.+|+++.+++.+..-.++|+++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------ 73 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------ 73 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------
Confidence 34667778899999999999999999999966 5788889999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
.++.+..++.+|.++.....|++|+..+.+|+.+.+..
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999987764
No 221
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.037 Score=62.79 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly-~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...+++|..|...|++++-..+....-..+..+ .....+.....|-..+ ..-+.++.-+..+..+++...+.. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 357789999999999988777666655544332 1123334433333333 334566777888888888765421 1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
.......-..|..+|+..++|.+|+......+.-+++.. +.......+..=...|+.+.+..+|...+..|...+..+
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 112234456789999999999999999999888777754 445556666667888899999999999888887766555
Q ss_pred cCCCcHH-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCC
Q 001523 225 LGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTRK 301 (1060)
Q Consensus 225 lG~dhp~-~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~--k~~e~AeAl~~~~~~ 301 (1060)
+-+ |. .+..-..=|.++....+|.-|..||-+|++-+... .++......+.++..++- ...+.-.++......
T Consensus 202 Ycp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~ 277 (411)
T KOG1463|consen 202 YCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLA 277 (411)
T ss_pred ccC--HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHH
Confidence 432 22 22333344667777799999999999999887554 344455545444433332 222222222211111
Q ss_pred CchhhhhcCCCcHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
Q 001523 302 PDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAKV 344 (1060)
Q Consensus 302 ~d~~~a~~~~~svselL~~Lg~~y--~~qGqyeEAl~~YeqALkL 344 (1060)
+. ......+++..++.++ +...+|..|+.-|+.-+.-
T Consensus 278 l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~ 316 (411)
T KOG1463|consen 278 LK------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAE 316 (411)
T ss_pred Hh------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhc
Confidence 11 1123345667777777 4557788888888776653
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0014 Score=56.53 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=46.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 117 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 117 y~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
++..|+|++|+.+|++++.. .|....++..+|.+|...|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 3556788999999999999999999999998873
No 223
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0015 Score=56.47 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=47.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
++..|+|++|+.+|++++.. +|....++..+|.+|...|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999976 4677889999999999999999999999998875
No 224
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.07 E-value=0.024 Score=55.79 Aligned_cols=120 Identities=21% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~---d~-p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
++..+..|...+.-|-|++|..-|++|+++...+-.. || -..+.++..|+..+..+|+|++++....++|..+.+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 3444556777888999999999999999987655222 11 1246678899999999999999999999999998764
Q ss_pred cCCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 001523 141 LGLD---HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 184 (1060)
Q Consensus 141 ~g~d---~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g 184 (1060)
.... -..++.+.++-|..+..+|+.++|+..|+.+-++..+..|
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 3222 1235666788899999999999999999999998876554
No 225
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.06 E-value=0.087 Score=59.64 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~-A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
...+..+...+..++++++..+..++.......+....... ..+|..|.. +..+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~-lq~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK-LQQLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhccc--------
Confidence 45555677777999999999999999887654432211111 222222222 22233444444443221100
Q ss_pred ChhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDL-AVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 145 ~p~~a~ay~nL-A~lY~~lGdyeeAleyyekALei~ee~~g--~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+. ....+ -..-.++.....-....+..+.+....+. ......+..+..++.+....|+++.|..++.++....
T Consensus 101 -~~---~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 101 -PQ---DLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred -HH---HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 00 00000 01111111112222233333333222221 1244567889999999999999999999999887643
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001523 222 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 222 eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe-I~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~ 300 (1060)
... ......+.+..+.+++..|+..+|+..++..+. ......+...... ...++.+ ....
T Consensus 177 ~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~ 237 (352)
T PF02259_consen 177 PSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE--LKSGLLE-------------SLEV 237 (352)
T ss_pred Ccc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH--Hhhcccc-------------cccc
Confidence 111 111334556678999999999999999988777 3222211111100 0000000 0000
Q ss_pred CCchhhhhcCCCcHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHhhhhc
Q 001523 301 KPDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 349 (1060)
Q Consensus 301 ~~d~~~a~~~~~svselL~~Lg~~y~~q------GqyeEAl~~YeqALkL~~ki~ 349 (1060)
..............+.++..+|...... +.+++++.+|++++++.+..+
T Consensus 238 ~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 238 ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 0000011111223567788888888777 889999999999999988655
No 226
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.04 E-value=0.0067 Score=65.69 Aligned_cols=103 Identities=19% Similarity=0.109 Sum_probs=84.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHH
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTM 149 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d-----~p~~a 149 (1060)
+.....+++|+..|.-|+-..+.. +.++...+.++..+|++|..+|+-+....++++|++.+++.+... ..+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 344557889999999888765433 456668899999999999999999999999999999987765332 22456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.+++.+|.+++++|++++|+.+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999999998873
No 227
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.52 Score=55.86 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---- 137 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~---- 137 (1060)
.++...++.-|+.-...|+...|...|.+|++.+. ++......+...|..-..+..++.|...|+-||+..
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 35566777788888999999999999999998763 234445566667777777888888888888777642
Q ss_pred -----------HHhcCC---------------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 138 -----------ERELGL---------------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 138 -----------ek~~g~---------------------d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
++.+|. ++|....++..+-.+....|+-+.-.+.|++|+.-.......
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ek 358 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEK 358 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHH
Confidence 111111 233345566777777777899999999999998732110000
Q ss_pred CC-hhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 186 SH-PNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 186 d~-p~~a~a~~nLA~i-y~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
.. ...+..++|.+.. -....+.+.+.+.|+.+|++. ...+...+..+...|.....+.+...|.+.+-.|+
T Consensus 359 r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 359 RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 00 0112333344332 235789999999999999865 23344556666666666666666666666655554
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.014 Score=61.45 Aligned_cols=134 Identities=15% Similarity=0.064 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..-+.+|..+...|++.+|...|++++.- -.......+..++...+..+++..|...+++..+.... .
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa---~-- 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA---F-- 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---c--
Confidence 34566899999999999999999999842 12334567889999999999999999998887765311 1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
........+|.+|..+|++++|...|+.++..+ +. .......+..+..+|+.++|..-|....+..
T Consensus 158 -r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 -RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred -CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 123346678999999999999999999999853 11 2344557888999999999988887766654
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.18 Score=61.54 Aligned_cols=192 Identities=15% Similarity=0.072 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK-----LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA- 133 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel-----~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKA- 133 (1060)
.+.+..+.+-.+|...+..-.++-|+..|-+.-.. .+++ ..+..--...|.+-..-|+|++|.+.|..+
T Consensus 687 EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 687 EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 34455666667787777777888888777665322 1111 001111123445555567888887777543
Q ss_pred -----HHHHHHh------------c--CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HhCC--
Q 001523 134 -----LDINERE------------L--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH--------LTCG-- 184 (1060)
Q Consensus 134 -----LeL~ek~------------~--g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e--------e~~g-- 184 (1060)
+++..++ . +.++.....++.++|..+..+..|++|.+||.++-.... +.++
T Consensus 762 rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~L 841 (1189)
T KOG2041|consen 762 RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGEL 841 (1189)
T ss_pred hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhH
Confidence 3332221 1 234455778899999999999999999999976532200 0010
Q ss_pred ----CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHHHHHHhcCCCcHHHHHHHHHHHH
Q 001523 185 ----PSHPNTAATYINVAMMEEGLGNVHVALRYLHK-------------------ALKCNQRLLGPDHIQTAASYHAIAI 241 (1060)
Q Consensus 185 ----~d~p~~a~a~~nLA~iy~~lGdydEAie~yek-------------------ALei~eeilG~dhp~~a~a~~nLA~ 241 (1060)
..-++....+-.+|.++...|..++|.+.|.+ |++++++. .-+.+.......+.
T Consensus 842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAA 918 (1189)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHH
Confidence 01122233455678888888888888777632 33333222 11222222333344
Q ss_pred HHHhcCChhHHHHHHHHH
Q 001523 242 ALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 242 ly~~lGdyeEAie~lqkA 259 (1060)
-+...++.-+|++.++++
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 455667777777777766
No 230
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.92 E-value=0.0035 Score=70.68 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 189 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~ 189 (1060)
+...|+-|+.+|.|++|+++|.+++.+. |...-.+.|.|.+|+++.+|..|..-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 4567999999999999999999999873 4455678899999999999999999999999863 33
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
...+|...|.+...+|+..+|.+-++.+|++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 57889999999999999999999999999875
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.92 E-value=0.0094 Score=64.56 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=82.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-----ChhHHHH
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-----HPNTAAT 193 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d-----~p~~a~a 193 (1060)
....+++|+..|.-|+-.++- .+.++...+.++..+|++|..+|+.+....++++|++.+.+.+... ......+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345788999999988877654 3445567899999999999999999888889999988887654322 2344678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
++.+|.++.+.|++++|..+|.+++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 8899999999999999999999988743
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.92 E-value=0.13 Score=60.20 Aligned_cols=155 Identities=13% Similarity=0.022 Sum_probs=98.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
...|..|...+.++|...++.++...-.......+|=..|....+|+.-+.+.+..-.+ ...+......+...+|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 45555666677777777666654433344566677777899999999888877655433 11122334556778888
Q ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhc
Q 001523 158 FYYR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 158 lY~~---lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l---------GdydEAie~yekALei~eeil 225 (1060)
++.+ .|+.++|+..+..++.. .......++..+|++|-.+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 99999999999887653 1223345677788887542 235666666666666431
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCChhHH
Q 001523 226 GPDHIQTAASYHAIAIALSLMEAYPLS 252 (1060)
Q Consensus 226 G~dhp~~a~a~~nLA~ly~~lGdyeEA 252 (1060)
....-.|++.++...|...+.
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred ------cccchHHHHHHHHHcCCcccc
Confidence 112334667777767764443
No 233
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.76 E-value=0.027 Score=59.28 Aligned_cols=112 Identities=18% Similarity=0.094 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
......++..+|..|.+.|++++|++.|.++.+.+. .....+..++++-++....+++.....++.++-.+....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 345778899999999999999999999999887532 334567888899999999999999999999998887653
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+..........-|..+...++|.+|.+.|-.++..+
T Consensus 107 --~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 107 --GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred --chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2222222333445667778899999999888776543
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.72 E-value=0.48 Score=53.19 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-h-cCCCC----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 63 ADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVA-V-CGPYH----RMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 135 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qG-dyeEAi~~fekALel~ek-i-lg~d~----p~~A~A~~~LA~ly~~lGdyeeAle~yqKALe 135 (1060)
..++.+|..|...+..+ ++++|..++++|++++.. . ....+ .....++..|+.+|...+.++...+ ..++++
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~ 111 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence 45889999999999999 999999999999999754 1 11122 3456788999999999988764444 444555
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 136 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 136 L~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
..+...+ +++... +..+-.+. ..++.+++.+.+.+++.
T Consensus 112 ~l~~e~~-~~~~~~--~L~l~il~-~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 112 LLESEYG-NKPEVF--LLKLEILL-KSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHhCC-CCcHHH--HHHHHHHh-ccCChhHHHHHHHHHHH
Confidence 5544333 232221 12222222 25666666666655544
No 235
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.66 E-value=0.045 Score=57.60 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
..+..++..+|..|...|+++.|++.|.++.+.+. .....+..+.++-.+....++|.....++.++-.+.....
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999877542 2334678888999999999999999999999999876622
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+..........-|..+...++|.+|.+.|-.++.-.
T Consensus 108 --d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 108 --DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred --hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 223333444556777888999999999998876544
No 236
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.65 E-value=0.033 Score=68.37 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001523 80 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 154 (1060)
Q Consensus 80 dyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l-----GdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~n 154 (1060)
+...|..+|+.+.+. ....+...+|.+|..- .+.+.|+.+|+.+..-+.+..... ...+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccH
Confidence 356778888777654 3456778888888764 689999999999988322211011 2346788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcC
Q 001523 155 LAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 155 LA~lY~~lG-----dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lG---dydEAie~yekALei~eeilG 226 (1060)
+|.+|.... +++.|+.+|.++-+. .+ ..+.+.||.+|.... ++.+|.++|..|....
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998843 678899999988774 22 356778999988766 5779999999887632
Q ss_pred CCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 001523 227 PDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 227 ~dhp~~a~a~~nLA~ly~~----lGdyeEAie~lqkALeI 262 (1060)
...+++++|.||.. .-+...|..+|+++.+.
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 24567778888764 34778899999988764
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.044 Score=54.75 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 132 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d--------------~p~~A~A~~~LA~ly~~lGdyeeAle~yqK 132 (1060)
.+...|......|+.+.++..+.+++.++.--+-.+ ......++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344456666777888888888888888754221111 112345777888899999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 133 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 133 ALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
++.+ +|..-.++..+-.+|..+|+..+|+.+|++....+.+.+|..
T Consensus 88 ~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9987 355677899999999999999999999999999888765543
No 238
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.074 Score=56.60 Aligned_cols=100 Identities=14% Similarity=-0.011 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
..+...+|..+...+++++|+..++.++..-. +......+-.+||++...+|++++|+..+.... +
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~ 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------E 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------c
Confidence 44456788899999999999999999986421 233345667889999999999999998887543 2
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 229 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+..........|.++...|+-++|...|+++++.
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3344555567899999999999999999999986
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.1 Score=55.52 Aligned_cols=101 Identities=18% Similarity=0.027 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
..+...+|..+...+++++|+..++.++..- .|......+-.+||.+...+|.+++|+..+.....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--------- 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--------- 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence 4456678899999999999999999998653 22333456678899999999999999987765332
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+..........|.++..+|+-++|+..|++++...
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23344555678999999999999999999999863
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.16 Score=56.30 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.+..-|.+|+.-|++++|++...+... ..+...--.++.++.+++-|...+++..++.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~-------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGEN-------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 344557889999999999988776332 223334456777888899999999988887432
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG 226 (1060)
.++..||..+...- .+-+-++.|+-++++..+. .+.+..+++.+|.|+..+|+|++|...++.||.-.
T Consensus 170 ---~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----- 237 (299)
T ss_pred ---HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 23444555444321 1111134444444444432 33456788899999999999999999999999854
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHH
Q 001523 227 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 274 (1060)
Q Consensus 227 ~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t 274 (1060)
.....++.|+-.+....|.-.++..-+-.-+.. ..+.|+.+
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~----~~p~h~~v 278 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKDAEVTERNLSQLKL----SHPEHPFV 278 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh----cCCcchHH
Confidence 233567778888888899887776655433332 24566544
No 241
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.51 E-value=0.54 Score=51.91 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHHcC--------------CH
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DF 123 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d---~-------p~~A~A~~~LA~ly~~lG--------------dy 123 (1060)
-+.+.++++..|+..+|+.-|++-+..+....+.. . ...+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 45567899999999999999999999887775541 1 122333444555544432 13
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 124 NQATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 124 eeAle~yqKALeL~ek~~g-~d-------------------~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
..|..+...--+.++.... ++ .+.....+..+.........-...++++.+|+..+....
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3343333333333333310 00 000011111111111122344567888999998887754
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
.......+...+|..|+..|+|++|+++|+.+...+++- ........++..|..|+..+|+.++.+.+.-
T Consensus 173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344556677899999999999999999999997766532 3344456778889999999999887766543
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.014 Score=68.50 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 001523 105 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALY-LLHL 181 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~--~a~ay~nLA~lY~~lGdyeeAleyyekALe-i~ee 181 (1060)
+...++...+..++..|+|.+|.+.+... .+.+...+...+. ....++|||.++++++.|.-+..+|.+||+ .+.+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999877543 2222211112222 345578999999999999999999999996 4433
Q ss_pred hCCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 001523 182 TCGP---------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 245 (1060)
Q Consensus 182 ~~g~---------d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~ 245 (1060)
+... .......+++|.|..|...|+.-.|.++|.++...+.+. .+.|..||.|+..
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHH
Confidence 3211 112235788999999999999999999999999988432 3467777777753
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.50 E-value=0.05 Score=64.68 Aligned_cols=132 Identities=18% Similarity=0.131 Sum_probs=98.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----
Q 001523 112 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH---- 187 (1060)
Q Consensus 112 ~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~---- 187 (1060)
.+-.-.++..+.++-+++.++||++. ++.+.+|..||.- ...-..+|+++|+++++..+..++...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 33344456678999999999999984 5567777777652 233468899999999988766554321
Q ss_pred -------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 001523 188 -------------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 254 (1060)
Q Consensus 188 -------------p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie 254 (1060)
.-...+...||+|..++|+.++|++.+++.++... ..+...++.+|..++..+++|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 11245667899999999999999999999887541 12345688899999999999999988
Q ss_pred HHHHH
Q 001523 255 HEQTT 259 (1060)
Q Consensus 255 ~lqkA 259 (1060)
.+.+-
T Consensus 317 lL~kY 321 (539)
T PF04184_consen 317 LLAKY 321 (539)
T ss_pred HHHHh
Confidence 77653
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.065 Score=53.51 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC--------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--------------HPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d--------------~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
+...|......++.+.++..+++++.++.-.+-.+ ......++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33445555667788888888888888765322111 1122456677888999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCC
Q 001523 218 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 270 (1060)
Q Consensus 218 Lei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~d 270 (1060)
+.+. |..-.++..+-.+|..+|++.+|+.+|+++...+.+-+|..
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9875 44556778889999999999999999999999998877764
No 245
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.012 Score=64.07 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 189 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~ 189 (1060)
+..-|..|+.-..|+.|+..|.+|+.+ .|..+..|.|-|.||+++.+|+.+.+-.++|+++ .++
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 344566777788999999999999987 4667788999999999999999999999999996 467
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
.+...+.||..+.....|++|+..+++|..+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999998887654
No 246
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.38 E-value=0.39 Score=53.41 Aligned_cols=187 Identities=12% Similarity=0.036 Sum_probs=128.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 78 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
..+.++|+.-|++++++- |....+-..++..+-.+++.+++|++...+|.+.|...+.....++. -.+.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHH
Confidence 447899999999999874 33445566789999999999999999999999999887655444432 223334433
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTA 233 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp----~~a 233 (1060)
.-....+.+.-.++|+..|+.++... +......+-..||.+|+..|.|.+-...+++.-.-++.-.|.++. ...
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 33445566667777877777665543 333344555679999999999999888888877766555454432 344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 001523 234 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 275 (1060)
Q Consensus 234 ~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~ 275 (1060)
.+|..--.+|-.+.+-..-..+|++++.+...+ .||...
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlIm 230 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIM 230 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHH
Confidence 555444566777777777777888888874332 455443
No 247
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.065 Score=60.88 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=93.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
....|..+-+.|+-|+...+|..|+..|.+.|+.- . .+....+.+|.+.|.+.+.+|+|..|+.-+.+|+.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34467888889999999999999999999998652 1 444567889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 141 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 180 (1060)
Q Consensus 141 ~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e 180 (1060)
.|....+|+.=|.|++.+.++++|..+++..+.+..
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 355688999999999999999999999999887643
No 248
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.22 E-value=0.072 Score=50.07 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=63.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001523 159 YYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 237 (1060)
Q Consensus 159 Y~~lGdyeeAleyyekALei~ee~~g~d-~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~ 237 (1060)
..+.|+|..|++.+.+.++......... ......++.++|.++...|++++|+..+++|+++.++. .+......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3578999999999999999876644222 12356678899999999999999999999999999887 44455555555
Q ss_pred HHHHH
Q 001523 238 AIAIA 242 (1060)
Q Consensus 238 nLA~l 242 (1060)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.046 Score=59.77 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR----------MTAGAYSLLAVVLYHTGDFNQATIYQQKAL 134 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p----------~~A~A~~~LA~ly~~lGdyeeAle~yqKAL 134 (1060)
..++.+.|+.++.+|+|.+|...|+.|+...+.+.-...| .....+.+++.|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999876654322222 234578899999999999999999999888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 135 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 135 eL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.. ++....+|+.-|.+....-+.++|..-|.++|++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 75 4667899999999999999999999999999985
No 250
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.10 E-value=0.66 Score=51.67 Aligned_cols=144 Identities=18% Similarity=0.104 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 001523 66 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 66 raLlelA~~yl~----qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~----lGdyeeAle~yqKALeL~ 137 (1060)
...+.++.+|.. ..+..+|+.+|+.+.+ .....+.+.||.+|.. ..++.+|..+|++|.+.-
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 566667777754 3457888888885543 3455688889999988 458999999999998752
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHH----CCC
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 206 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lG-------dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~----lGd 206 (1060)
+..-..+...+|.+|..-. +...|+.+|.++.... ...+.++||.+|.. ..+
T Consensus 144 -------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 144 -------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred -------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 2111445778888887642 2236777777766542 35678889988865 348
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Q 001523 207 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 247 (1060)
Q Consensus 207 ydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lG 247 (1060)
+.+|..+|.+|.+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 899999999997742 2 45566777 555555
No 251
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.99 E-value=0.27 Score=54.53 Aligned_cols=195 Identities=9% Similarity=0.005 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
-.++-++..+++.+|+|++-...|.+.|...+.....++... ..+.+-..-....+.+--.++|+..|+.++....
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKN-- 140 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYISTSKNMDLLQEFYETTLDALKDAKN-- 140 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhc--
Confidence 345667789999999999999999999987665433332221 1112211112233444455666666666554322
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p----~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
...+...-..||.+|+..++|.+-.+.+++.-..++...|.++. ....+|..--.+|..+.+-.+-..+|++++.+
T Consensus 141 eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 141 ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh
Confidence 12234445679999999999999888888877777665554432 34555655667888888888888999999998
Q ss_pred HHHhcCCCcHHHHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 221 NQRLLGPDHIQTAA-SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 221 ~eeilG~dhp~~a~-a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
...+ -||.+.. +...=|..+.+.|+|++|..-|-+|++-+.+.
T Consensus 221 KSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 221 KSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 7554 3554443 33345667788899999988887777665443
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.17 Score=62.33 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 001523 64 DGRQLLESSKTALD-----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKA 133 (1060)
Q Consensus 64 dAraLlelA~~yl~-----qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG-----dyeeAle~yqKA 133 (1060)
.....+.+|.+|+. ..|.+.|+.+|+.+.+-+.+.. +.....+.+.||.+|.... ++..|+.+|.++
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 34455555666543 4689999999999987322110 1113347889999999853 678899999988
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC----CC
Q 001523 134 LDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GN 206 (1060)
Q Consensus 134 LeL~ek~~g~d~p~~a~ay~nLA~lY~~lG---dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l----Gd 206 (1060)
-++ . ...+.+.||.+|..-. ++.+|.+||..|... .+ ..++++||.||..- .+
T Consensus 320 A~~-------g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 320 AEL-------G---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred Hhc-------C---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCC
Confidence 765 1 3456888999988765 578899999888763 12 46778899888753 57
Q ss_pred HHHHHHHHHHHHHH
Q 001523 207 VHVALRYLHKALKC 220 (1060)
Q Consensus 207 ydEAie~yekALei 220 (1060)
...|..+|+++.+.
T Consensus 380 ~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHHc
Confidence 88999999998874
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.075 Score=58.22 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---DHPD-------TMKSYGDLAVFYYRLQHTELALKYVKRAL 176 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~---d~p~-------~a~ay~nLA~lY~~lGdyeeAleyyekAL 176 (1060)
..++..-|+-++.+|+|.+|...|+.|+..++.+.-. ..+. ..-.+.|++.|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999887655322 2222 23457899999999999999999999888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 177 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 177 ei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
. .++....+|+..|.+....=+.++|.+-|+++|++.
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 7 367778999999999999999999999999999864
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.78 E-value=0.17 Score=56.80 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~-lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
....+.....+..+.|+.+|.+|++ .......+|...|.+.++ .++.+.|...|+.+++.+. .
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~--- 68 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----S--- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T---
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----C---
Confidence 3344555555668899999999972 223445678888888667 5677779999999998762 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~-~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
....+......+...++.+.|..+|++++..+ .... .-.+|..........|+++....+++++.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSL------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34445556677889999999999999998742 1111 23456666677777788888888888777765
No 255
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.75 E-value=0.13 Score=48.25 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=61.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 001523 117 LYHTGDFNQATIYQQKALDINERELGLD-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 195 (1060)
Q Consensus 117 y~~lGdyeeAle~yqKALeL~ek~~g~d-~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~ 195 (1060)
..+.|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++.. +......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4568999999999999999876643322 123566788999999999999999999999999998864 3333444444
Q ss_pred HHHHH
Q 001523 196 NVAMM 200 (1060)
Q Consensus 196 nLA~i 200 (1060)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44443
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.73 E-value=0.43 Score=54.00 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=97.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 001523 61 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD-INER 139 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALe-L~ek 139 (1060)
....+..++..+.+....|+++.|..++.++..... ........+....+.+++..|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 566778899999999999999999999998876421 11122456777889999999999999999999888 3322
Q ss_pred h-------------------------cCCCChhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 140 E-------------------------LGLDHPDTMKSYGDLAVFYYRL------QHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 140 ~-------------------------~g~d~p~~a~ay~nLA~lY~~l------GdyeeAleyyekALei~ee~~g~d~p 188 (1060)
. ........+.++..+|.....+ +.+++++.+|.+++.+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 1 0112234677788888888888 88899999999998863 3
Q ss_pred hHHHHHHHHHHHHHHC
Q 001523 189 NTAATYINVAMMEEGL 204 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~l 204 (1060)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455677777766543
No 257
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.71 E-value=0.84 Score=54.26 Aligned_cols=186 Identities=12% Similarity=-0.045 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQ 222 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdy-------dEAie~yekALei~e 222 (1060)
..+..||.+++.+++|+.|..+|+.+..-+.... .....+.++-..|.++...+.. ++...+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 4567899999999999999999999887654311 1233455555666666666643 477788888888776
Q ss_pred HhcC---CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001523 223 RLLG---PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR---TQDAAAWLEYFESKAFEQQEAAR 296 (1060)
Q Consensus 223 eilG---~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~---t~~al~~La~l~~k~~e~AeAl~ 296 (1060)
.... .......++....+.++..++.+.+|...+-+..... + ..+.. .+.++..++++.
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~---l-~~~l~~~~~alllE~~a~~~----------- 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEI---L-ESDLRPFGSALLLEQAAYCY----------- 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH---H-hhhhhhHhhHHHHHHHHHhh-----------
Confidence 6211 1112445677778888999999988887666555432 1 11111 222333333332
Q ss_pred hcCCCCchhhhhcC-CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhcCCCC
Q 001523 297 NGTRKPDASIASKG-HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 353 (1060)
Q Consensus 297 ~~~~~~d~~~a~~~-~~svselL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki~~~~n 353 (1060)
............. ....+--+..-|..|.+.|+...|+.+|.+|+.++....+..-
T Consensus 352 -~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~W~~~ 408 (414)
T PF12739_consen 352 -ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKGWSLI 408 (414)
T ss_pred -cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 0000000000000 1122223344577789999999999999999999997665433
No 258
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.66 E-value=0.31 Score=54.24 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=108.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l----GdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.+......+++..|...+.++-.. ....+...++.+|..- .+..+|+.+|+.+.+.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------- 106 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------- 106 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------
Confidence 344445677888888888887652 1126777888888764 4678899988855442
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLH 215 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~----lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lG-------dydEAie~ye 215 (1060)
....+.++||.+|.. ..++.+|..+|++|.+. .+.....+.++||.+|..-. +...|+.+|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 235678889999987 45899999999999874 22222455778888887642 2236777777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 001523 216 KALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 216 kALei~eeilG~dhp~~a~a~~nLA~ly~~----lGdyeEAie~lqkALeI 262 (1060)
++.... ...+...||.+|.. ..++.+|..+|+++-+.
T Consensus 180 ~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 180 KAAELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 766543 34567788888864 34889999999988764
No 259
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.28 Score=54.91 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 001523 111 SLLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 186 (1060)
Q Consensus 111 ~~LA~ly~~lGdyeeAle~yqKALeL----~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d 186 (1060)
..+|.-....+++++|+..|.+.|.- -++. ....-.+..+|+.+|...|++..-.+......+.+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--- 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--- 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---
Confidence 34566667788999999999888764 1111 112345678999999999999877666666655554432
Q ss_pred ChhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy-~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
.+....+...|-..+ .....++.-+..+..+++.+.+- .........-..+..++.+.|.|.+|+......+..+++
T Consensus 80 k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 80 KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 344444443333332 34556778888888887766432 111222334456888999999999999999988888877
Q ss_pred HcCCCCH
Q 001523 266 KLGPDDL 272 (1060)
Q Consensus 266 llg~dh~ 272 (1060)
.-+.-..
T Consensus 158 ~DDK~~L 164 (421)
T COG5159 158 YDDKINL 164 (421)
T ss_pred hcCccce
Confidence 6444333
No 260
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.12 Score=58.91 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
..++.-|..-|+-|+...+|..|+..|.++|..- -.|....+..|.|-|.+.+.+|+|..|+.-+.+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3467788888999999999999999999998752 2333446788999999999999999999999999984
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.|..+.+++.=|.|++.+.++++|..+.++.+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56678899999999999999999999999887765
No 261
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.45 E-value=1.1 Score=52.45 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=107.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------CCChhHHHHHHHHHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG---------------------LDHPDTMKSYGDLAVFYY 160 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g---------------------~d~p~~a~ay~nLA~lY~ 160 (1060)
.+|.-..++..++.++.++|++..|.+++++||-.+++... ..+.....+++.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999988764311 122335566777788889
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001523 161 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 239 (1060)
Q Consensus 161 ~lGdyeeAleyyekALei~ee~~g~d-~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nL 239 (1060)
+.|-+..|+++++-.+.+ .+. +| ..+++.+=....+.++|+-=+++++.......+. .........+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 999999999999888775 222 33 3445556666677788877777777655421100 000112344566
Q ss_pred HHHHHhcCCh---------------hHHHHHHHHHHHHH
Q 001523 240 AIALSLMEAY---------------PLSVQHEQTTLQIL 263 (1060)
Q Consensus 240 A~ly~~lGdy---------------eEAie~lqkALeI~ 263 (1060)
|.+++.+++- +.|...+++|+..+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 7778888877 89999999998875
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.44 E-value=0.031 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
++.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999977544
No 263
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.42 E-value=0.92 Score=60.83 Aligned_cols=156 Identities=20% Similarity=0.075 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC----C----------------
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D---------------- 122 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lG----d---------------- 122 (1060)
..+|..-.+|..|+..|++.+|+..|.+|+.+++.. .|+.+.+.|+-.++.+....+ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 457777788999999999999999999999998876 778888888888776654321 1
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcC---CCCh--hHHHHHHHHHHHHHH
Q 001523 123 ------------------------------------FNQATIYQQKALDINERELG---LDHP--DTMKSYGDLAVFYYR 161 (1060)
Q Consensus 123 ------------------------------------yeeAle~yqKALeL~ek~~g---~d~p--~~a~ay~nLA~lY~~ 161 (1060)
...-...+.+++.+|.+... ...| -..++...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11122355556666555421 1112 244666677777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 162 LQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 162 lG--------------------dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+. .-.++.+++.+++.+..... ...+.+..|..+|.+|..+|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 76 67888888888888754433 456678899999999999999999888888887766
Q ss_pred H
Q 001523 222 Q 222 (1060)
Q Consensus 222 e 222 (1060)
.
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
No 264
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=1.2 Score=53.65 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
+..++..++++...|+.+.|+.+++.++....+ ......++.+|+++..+.+|.+|..++....+...
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd------ 334 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD------ 334 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh------
Confidence 345566688888888888899999888873222 12345778899999999999999998887766531
Q ss_pred ChhHHHH-HHHHH-HHH--------HHcCCHHHHHHHHHHHHHHHHH---------------------------------
Q 001523 145 HPDTMKS-YGDLA-VFY--------YRLQHTELALKYVKRALYLLHL--------------------------------- 181 (1060)
Q Consensus 145 ~p~~a~a-y~nLA-~lY--------~~lGdyeeAleyyekALei~ee--------------------------------- 181 (1060)
...+ |..++ .|| ...|+-++|..+++.+..+...
T Consensus 335 ---WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P 411 (546)
T KOG3783|consen 335 ---WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASP 411 (546)
T ss_pred ---hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccch
Confidence 1111 11111 121 1123334443333333222111
Q ss_pred ---------------------------hC-CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001523 182 ---------------------------TC-GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 233 (1060)
Q Consensus 182 ---------------------------~~-g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a 233 (1060)
.. ..+..+...-+..+|.++..+|+-..|..+|+.+++-. .....++....
T Consensus 412 ~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~P 490 (546)
T KOG3783|consen 412 YYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVP 490 (546)
T ss_pred HHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhhcccccccc
Confidence 00 00112223345678999999999999999999988663 22234566677
Q ss_pred HHHHHHHHHHHhcCC-hhHHHHHHHHHHHH
Q 001523 234 ASYHAIAIALSLMEA-YPLSVQHEQTTLQI 262 (1060)
Q Consensus 234 ~a~~nLA~ly~~lGd-yeEAie~lqkALeI 262 (1060)
.+++.||.+|+.+|. ..+|..++.+|-+.
T Consensus 491 fA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 491 FALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 899999999999999 99999999988765
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.36 E-value=11 Score=47.05 Aligned_cols=140 Identities=16% Similarity=0.081 Sum_probs=84.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------HHHHHHh--------------cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTKA------LAKLVAV--------------CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 130 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekA------Lel~eki--------------lg~d~p~~A~A~~~LA~ly~~lGdyeeAle~y 130 (1060)
.|.+-..-|+|++|.++|..+ +++..++ -+.++.....++.++|..+..+..+++|.+||
T Consensus 740 ~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777777777543 2332221 12345566789999999999999999999999
Q ss_pred HHHHHHH------------------HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Q 001523 131 QKALDIN------------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR------------------ 174 (1060)
Q Consensus 131 qKALeL~------------------ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyek------------------ 174 (1060)
.+.-... -+.+..+ ...+-.||..+...|.-++|.+.|.+
T Consensus 820 ~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~----s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 820 SYCGDTENQIECLYRLELFGELEVLARTLPED----SELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWG 895 (1189)
T ss_pred HhccchHhHHHHHHHHHhhhhHHHHHHhcCcc----cchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 8753221 1112222 23345577777777777777766643
Q ss_pred -HHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 175 -ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 217 (1060)
Q Consensus 175 -ALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekA 217 (1060)
|.++.++. .-+......-..+.-+...++.-+|++.+++|
T Consensus 896 ~avelaq~~---~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 896 EAVELAQRF---QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHhc---cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 22333222 22333333444555667778888888888776
No 266
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.32 E-value=2.2 Score=54.17 Aligned_cols=111 Identities=21% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 154 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~n 154 (1060)
....++|.+|+....+.++. +|....+...-|..+.++|++++|..++ +++... +.+ .-..+..
T Consensus 19 ~ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHH
Confidence 35667788888877777754 5777778888899999999999999444 344332 122 2345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 001523 155 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 210 (1060)
Q Consensus 155 LA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEA 210 (1060)
+-.+|.+++++++|..+|++++.. .|. ...++.+=.+|.+.+.|.+-
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999884 233 44555666666666666543
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.30 E-value=1.5 Score=51.50 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhc
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~---lGdyeeAle~yqKALeL~ek~~ 141 (1060)
+..+..+-..|....+|+.-+++.+..-.+- ..+-.....+...+|.++.+ .|+.++|+..+..++.-.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---- 212 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---- 212 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----
Confidence 3445555556777777777666665543331 01122344566778888888 899999999998875532
Q ss_pred CCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 212 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~l---------GdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie 212 (1060)
......++..+|.+|..+ ..+++|+.+|.++.++- .....-.|++.++...|.-.+...
T Consensus 213 ---~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---------~~~Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 213 ---ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---------PDYYSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred ---CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---------ccccchHHHHHHHHHcCCcccchH
Confidence 223456788888888653 23566666666666642 122344678888888887554443
Q ss_pred HHHHHH-HHHHHhcCCC----cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 213 YLHKAL-KCNQRLLGPD----HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 213 ~yekAL-ei~eeilG~d----hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
-+++.. .+. ...|.. ....-..+-.++.+....|++++|.+++++++.+
T Consensus 281 el~~i~~~l~-~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLS-SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHH-HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333333 222 111111 1111112234566777899999999999998875
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.28 E-value=0.038 Score=42.72 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
++.+||.+|..+|+|++|+++|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999977644
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.25 E-value=0.038 Score=41.51 Aligned_cols=31 Identities=35% Similarity=0.616 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+.+|+++|.+|..+|++++|+.+|++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4689999999999999999999999999973
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.11 E-value=0.043 Score=41.20 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 316 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 316 elL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
.+|..+|.+|..+|++++|+.+|++++++.+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999999764
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=3 Score=47.90 Aligned_cols=166 Identities=13% Similarity=-0.060 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 001523 154 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 233 (1060)
Q Consensus 154 nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a 233 (1060)
.-+.+++..|++.+|....++.|+ ++|....+...--.+++.+|+.+.-...+++.+... ..+-|...
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s 175 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS 175 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH
Confidence 344556677777777777777766 455555555556666777777777777777666532 23445555
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCc
Q 001523 234 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 313 (1060)
Q Consensus 234 ~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~s 313 (1060)
...-.++..+...|-|++|++..++++++ .+.+.-...+...+........+..+-++..... - ......
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi-----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-W----r~s~ml 245 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQI-----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-W----RQSWML 245 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccC-----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-h----hhhhHH
Confidence 55556677777888888888888888776 3333333333333322222222222222111110 0 011111
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 314 VSDLLDYINPSHDTKGRNVSTLKRKTYV 341 (1060)
Q Consensus 314 vselL~~Lg~~y~~qGqyeEAl~~YeqA 341 (1060)
.+.-|...+..|.+.+.|+.|+..|..-
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 2233455666777778888888888653
No 272
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.04 E-value=1.7 Score=47.98 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~-lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
.++.+|+++.+.|+|++.+.+.++++... ......=.+.|..+|.. .|....+...+.....-.+ +...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccch
Confidence 46678999999999999999999998762 22333444555555533 2333333333332222111 1111
Q ss_pred hhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCCCC--Chh-HHHHHHHHHHHHHHC-----C-----CHHHHH
Q 001523 146 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEGL-----G-----NVHVAL 211 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdy-eeAleyyekALei~ee~~g~d--~p~-~a~a~~nLA~iy~~l-----G-----dydEAi 211 (1060)
... ..+..-| .... ++=..++..++.+....+-+. ... .+..+-..|..|..+ | -.++|.
T Consensus 73 ~~~----~~~i~~y--k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQ----VKLIKDY--KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111 1111111 1111 233445566666655533221 111 222223345554422 1 247899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHcC
Q 001523 212 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 212 e~yekALei~eeilG~dhp~~a~a~~nLA~ly~-~lGdyeEAie~lqkALeI~rkllg 268 (1060)
+.|++|+.++...+.+.||.......|.+..|. .+|+.++|....++|++.....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999888999988888888887764 589999999999999988766543
No 273
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.01 E-value=0.27 Score=55.24 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCCC
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 187 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~-lGdyeeAleyyekALei~ee~~g~d~ 187 (1060)
+|..+.....+.+..+.|...|.+|+.. ......+|...|.+.+. .++.+.|...|+++++.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------ 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------
Confidence 4555566666777789999999998631 12245678888988777 56666699999999986522
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 188 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 188 p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
....+......+...++.+.|..+|++++... ........+|......-...|+.+.....++++.+++
T Consensus 69 --~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 --DPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 23444455577789999999999999998753 1112123455555666677888888888777776653
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.9 Score=51.36 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
....+..+...+..|++.+|...|..+++.. +....+...|+.+|...|+.+.|...+...=.-.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~------- 198 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA------- 198 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-------
Confidence 3455667888899999999999999999763 4457788999999999999999888775421110
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
.......+..--.++.+.....+....-++ +. .+|....+.+.||..|...|++++|++++-..+....
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~-~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-- 267 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRR-LA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-- 267 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHH-HH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--
Confidence 000111100111222222222222221111 11 2455567788999999999999999999877766532
Q ss_pred cCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 256 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~lGdyeEAie~l 256 (1060)
+..+ ..+...|-.++...|.-+.+...|
T Consensus 268 -~~~d---~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 268 -GFED---GEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred -cccC---cHHHHHHHHHHHhcCCCCHHHHHH
Confidence 1111 123334455555566444443333
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.86 E-value=0.057 Score=40.16 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+.+++.+|.+|+.+|++++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4688999999999999999999999999873
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.80 E-value=0.059 Score=40.09 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 316 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 316 elL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
+++..+|.+|..+|++++|+.+|++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999998764
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.80 E-value=0.16 Score=53.54 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001523 82 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 158 (1060)
Q Consensus 82 eEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdy---eeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~l 158 (1060)
+.|++.++..+.. +|..+.++++-|.++..+.++ .++..+++.|+.-+++.+.- .|....+++++|.+
T Consensus 8 E~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA 78 (186)
T PF06552_consen 8 EHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHH
Confidence 4455555544433 466678888888888777555 34556666665555443221 36678899999999
Q ss_pred HHHcCC----HHHHHHHHHHHHHHHHH
Q 001523 159 YYRLQH----TELALKYVKRALYLLHL 181 (1060)
Q Consensus 159 Y~~lGd----yeeAleyyekALei~ee 181 (1060)
|..++. ..+|..+|++|...+++
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 987653 45666777776666554
No 278
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.52 E-value=2 Score=52.62 Aligned_cols=165 Identities=15% Similarity=0.038 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAK---------LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK------ 132 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel---------~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqK------ 132 (1060)
+-.+|...+..-+++-|++.|.++-.+ .+.......| --..+|.++...|.|.+|.+.|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P----~~iLlA~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP----NDLLLADVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence 334566666666777777777765432 1111001112 224678889999999999999876
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 001523 133 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 212 (1060)
Q Consensus 133 ALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie 212 (1060)
|++++.. .-++.++.-|+..|.-++-..+.++--+..... ..|. .-|.++...|+.++|+.
T Consensus 664 AlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePk------aAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 664 ALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPK------AAAEMLISAGEHVKAIE 724 (1081)
T ss_pred HHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcH------HHHHHhhcccchhhhhh
Confidence 4444322 124556666666676666555555444433322 1222 23667788899999886
Q ss_pred HH------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 213 YL------HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 213 ~y------ekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
.. +-++++.+++. ......+..++..+..+..+..|.+.|++.
T Consensus 725 i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 725 ICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred hhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 54 44555554431 122334555666666677777777766653
No 279
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=94.49 E-value=9.9 Score=42.33 Aligned_cols=187 Identities=16% Similarity=0.066 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~-lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
+..+|++.-+.++|++.+.+..+++++.. + ......-.+.|..+|.. .|....+...+.. ++.-+...+ ..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--NE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--ch
Confidence 45678888999999999999998876421 0 12333445556666644 4666666665554 222111111 11
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHHHHC-----CC-----HHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH---PNTAATYINVAMMEEGL-----GN-----VHVALRY 213 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~---p~~a~a~~nLA~iy~~l-----Gd-----ydEAie~ 213 (1060)
. ...+..-|. ..=-++-..++...+.+....+-+.. ...+..+-..|..|..+ |+ .++|.+.
T Consensus 76 ~----~~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 D----HVASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 111111111 11123445567777777766544321 11222223345544432 22 4589999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHc
Q 001523 214 LHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 214 yekALei~eeilG~dhp~~a~a~~nLA~ly~-~lGdyeEAie~lqkALeI~rkll 267 (1060)
|++|++++...+.+.||.......|.+..|. -+++.++|....++|++-....+
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~l 205 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAEL 205 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999887778889988877778777765 56999999988888887665443
No 280
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=6.3 Score=50.81 Aligned_cols=98 Identities=21% Similarity=0.145 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCC--------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTK------ALAKLVAVCGP--------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fek------ALel~ekilg~--------d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.|.+....+-|++|...|++ |++.+....+. ..-.....|..||.+....|...+|++-|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 36666666777777777654 22221111110 01123468899999999999999999988776
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 137 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 137 ~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
++ ...|...-.+..+.|.|++-++|+..|.+..++
T Consensus 1131 -------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1131 -------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred -------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 22 234667777888999999999999888765433
No 281
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.44 E-value=0.32 Score=44.79 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 140 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~ 140 (1060)
.++..++.|..++.+.+.++|+..++++|+.. .+.+....++..|..+|...|+|.+++.+..+-+++.++.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999874 3456778899999999999999999999999999888764
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.32 E-value=0.17 Score=53.33 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001523 165 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 241 (1060)
Q Consensus 165 yeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdy---dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ 241 (1060)
|+.|.+.++..+.. +|..+..+++.|.++..+.++ .++.+++++|+.-+++.+. -+|....++++||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 45566666655542 466678888888888877555 3466666666555544321 12556788889999
Q ss_pred HHHhcC----ChhHHHHHHHHHHHHHHHH
Q 001523 242 ALSLME----AYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 242 ly~~lG----dyeEAie~lqkALeI~rkl 266 (1060)
+|..++ +..+|..+|++|...+++.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 987654 4557777777777777654
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.32 E-value=14 Score=43.46 Aligned_cols=178 Identities=19% Similarity=0.117 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
.....++..+..|.+..-.|+-..|.++-.++-.+.. .|.+ .-++..-++.-...|+|+.|..-|+..+..
T Consensus 79 rKRdrgyqALStGliAagAGda~lARkmt~~~~~lls----sDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--- 149 (531)
T COG3898 79 RKRDRGYQALSTGLIAAGAGDASLARKMTARASKLLS----SDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD--- 149 (531)
T ss_pred HHhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhh----ccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---
Confidence 3445667777788888899999999999988876643 2322 234445567777889999999999877653
Q ss_pred hcCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001523 140 ELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 140 ~~g~d~p~~-a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekAL 218 (1060)
|++ ..-+..|-.--.++|+++.|..|.+++.... +....+...+=...+..|+|+.|+++.+...
T Consensus 150 ------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 150 ------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred ------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 322 1122233333457899999999999998753 2333444444445668899999999998776
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHH
Q 001523 219 KCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 219 ei~eeilG~dhp~~a~a~~nLA~ly~~-lGdyeEAie~lqkALeI 262 (1060)
... ..+.+-.....+-..-+..... .-+...|.....+++++
T Consensus 216 ~~~--vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL 258 (531)
T COG3898 216 AAK--VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL 258 (531)
T ss_pred HHH--hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 543 2223322222222222333222 23566677777777665
No 284
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.29 E-value=19 Score=46.21 Aligned_cols=166 Identities=17% Similarity=0.106 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
....|..++++|++++|..+++ ++... +.+ .-..+..+-.+|..++++++|..+|++++..+ |.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le-~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~ 109 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLE-ALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS 109 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHh-hhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc
Confidence 3446888999999999995544 43321 122 34567788899999999999999999998763 32
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHHHHHhc
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK--ALKCNQRLL 225 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek--ALei~eeil 225 (1060)
...+..+=.+|.+.+.|.+-.+. |+++++.. + ..+. ..|..+..+.......+.+..-.-. |-..++...
T Consensus 110 -eell~~lFmayvR~~~yk~qQka---a~~LyK~~-p-k~~y--yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF-P-KRAY--YFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC-C-cccc--hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 34455556677777777655443 33343322 1 2222 2233344444444444444431111 111111111
Q ss_pred CCC-c-HHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 226 GPD-H-IQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 226 G~d-h-p~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
... . ...+.... .-.++..+|++++|...+..
T Consensus 182 ~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 182 EKKGKIESEAEIIL-YLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHH
Confidence 111 1 11222222 23456678999999988753
No 285
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.24 E-value=0.055 Score=63.99 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..+-..|..++.-++|+.|+.+|.+|+++ ++..+..+.+.+.++...++|..|+.-+.+|+++ .
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------d 68 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------D 68 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------C
Confidence 34445678888999999999999999987 5777888889999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
|....+|+.-|.+++.++++.+|+..|+....+
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 778899999999999999999999999888775
No 286
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.13 E-value=0.11 Score=41.87 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 157 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~ 157 (1060)
.++..+|.+|..+|++++|+.+|+++++.. |+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 468899999999999999999999999973 445566666664
No 287
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.13 E-value=3 Score=49.66 Aligned_cols=177 Identities=14% Similarity=-0.061 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 139 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdy-------eeAle~yqKALeL~ek 139 (1060)
.+-.+|..++..++|+.|...|+.+.+-+... ......+.++-..|.++...+.. +....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34457999999999999999999988766421 22344566777777777777743 3777888888888776
Q ss_pred hcC---CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 001523 140 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 211 (1060)
Q Consensus 140 ~~g---~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~---~a~a~~nLA~iy--~~lGdydEAi 211 (1060)
... .......++....+.++...+.|.+|...+-++...+.. .... .+..+-.+|.+| ........-.
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~~ 363 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPGL 363 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCccc
Confidence 211 112245677788888899999998888877776654210 1111 344455566665 1110000000
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 001523 212 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 264 (1060)
Q Consensus 212 e~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~r 264 (1060)
. .....+.-+..-|.-|.+.|+...|+.+|.+|+.++.
T Consensus 364 ~---------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 364 T---------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred h---------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0 0111222333456778899999999999999999875
No 288
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=2.1 Score=50.44 Aligned_cols=189 Identities=14% Similarity=-0.037 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.+.++..|.++....++-+|..++.+++-.+.+- ........++..++.++..-+.--.++-+.-+++....+. ..+
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ld 349 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SLD 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-ccc
Confidence 5567778899999999999999888887654432 3445667788888888888888778888877777766553 222
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH------HHCCCHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME------EGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy------~~lGdydEAie~yekAL 218 (1060)
...+..-.++|..+..+|..++|+..+..++....-.+|.+.. +.+++..++|+ ....+++.+.+++++|-
T Consensus 350 -yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr--ara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~ 426 (482)
T KOG4322|consen 350 -YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR--ARAIFVFANCTLAFALSCANESLDGFPRYLDLAQ 426 (482)
T ss_pred -hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc--ceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHH
Confidence 2345556788999999999999999999999887655443322 22222222221 14567788888898888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhH---HHHHHHHHHH
Q 001523 219 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL---SVQHEQTTLQ 261 (1060)
Q Consensus 219 ei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeE---Aie~lqkALe 261 (1060)
.++.+. .-|..+.++++-+|..|-..|+.++ +...|++++.
T Consensus 427 ~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 427 SIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 888776 5577788899999999999998765 3444555443
No 289
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.98 E-value=0.12 Score=41.54 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 115 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ 115 (1060)
..++.+|..|..+|++++|+++|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778899999999999999999999976 4666778877775
No 290
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.92 E-value=2.2 Score=57.34 Aligned_cols=231 Identities=14% Similarity=0.034 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C-C----------------
Q 001523 105 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q-H---------------- 164 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~l---G-d---------------- 164 (1060)
...+....+|.+|...|++..|+.+|.+|+.+++.. .|+...+.++-.++.+..-+ | +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 456788899999999999999999999999998763 45555566655554433221 1 0
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhC---CCCCh--hHHHHHHHHHHHHHH
Q 001523 165 ------------------------------------TELALKYVKRALYLLHLTC---GPSHP--NTAATYINVAMMEEG 203 (1060)
Q Consensus 165 ------------------------------------yeeAleyyekALei~ee~~---g~d~p--~~a~a~~nLA~iy~~ 203 (1060)
...=.+.+++++.+|.+.. .+..+ -.+.+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 1111224444444444432 11122 234666777777777
Q ss_pred CC--------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 204 LG--------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 204 lG--------------------dydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.. .-.++.+++.+++.+.... -...+....|..+|.+|..+|-..++.-+++.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 7788888899988876432 2445677899999999999999999888888887766
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC-CCc-HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001523 264 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG-HLS-VSDLLDYINPSHDTKGRNVSTLKRKTYV 341 (1060)
Q Consensus 264 rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~-~~s-vselL~~Lg~~y~~qGqyeEAl~~YeqA 341 (1060)
-..+...+..+...+..+...+.-..+. .. ........... ... ...++..+-.+.++.+++..++.+.-..
T Consensus 476 ~~~l~~~~~s~~~lL~~~~~~Ygi~~~~-~~-----~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~L 549 (1185)
T PF08626_consen 476 VPGLIHWHQSYRSLLEELCKGYGISLDP-ES-----SSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLL 549 (1185)
T ss_pred ccccCCcchHHHHHHHHHhccCcccCCc-cc-----cccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4332111211111111111111000000 00 00000000000 111 2456777777889999999998888666
Q ss_pred HHHh
Q 001523 342 AKVK 345 (1060)
Q Consensus 342 LkL~ 345 (1060)
|+-.
T Consensus 550 L~~~ 553 (1185)
T PF08626_consen 550 LRTY 553 (1185)
T ss_pred HHHH
Confidence 6644
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.91 E-value=0.12 Score=38.51 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Q 001523 316 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 316 elL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ 346 (1060)
.+|..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999976
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.86 E-value=0.12 Score=38.54 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+.+|+.+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3588999999999999999999999999985
No 293
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=1.9 Score=50.86 Aligned_cols=148 Identities=14% Similarity=0.002 Sum_probs=98.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
.+.....+...+|-.+..+--.......|.+.....+..+..|.++....++-.|...+.+++-.+.+ +........+
T Consensus 238 ~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sV 315 (482)
T KOG4322|consen 238 KWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSV 315 (482)
T ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHH
Confidence 33344444444443333222222223334455555667777888888888888888888887655432 2223446677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
+..++.++.+-+.--.+..+.-+++..+.+.. .+...+..-.+||..+..+|..++|+..++.|+....-
T Consensus 316 LL~~ae~~~~g~~a~l~lplaL~~~~~~sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~ 385 (482)
T KOG4322|consen 316 LLTIAEARESGDTACLNLPLALMFEFKRSEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILV 385 (482)
T ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh
Confidence 78888888888888888888888887766643 22334556678899999999999999999999887643
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=5.2 Score=45.46 Aligned_cols=129 Identities=16% Similarity=0.067 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p 188 (1060)
..+.-+.-....|++.+|...|..++... +....+...|+.+|...|+.+.|...+...=.-... +..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~----~~~ 203 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD----KAA 203 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----hHH
Confidence 33445566778899999999999999874 334667889999999999999998887652211000 000
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 189 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
....+... ++.......+...+-.++ . ..|....+.+.||..|...|++++|.+++-..+.
T Consensus 204 ~~l~a~i~---ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 204 HGLQAQIE---LLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHH---HHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01111112 222222222222222211 1 1244456777899999999999999988755443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.33 E-value=0.072 Score=40.91 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 001523 129 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 170 (1060)
Q Consensus 129 ~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAle 170 (1060)
+|++||++ +|....+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788886 46778999999999999999999963
No 296
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.24 E-value=0.085 Score=60.20 Aligned_cols=93 Identities=26% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 70 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
-.+.-.+..|.+++|++.|..++.+ .+..+..|...|.++..++....|+.-|..|+.+. ++.+
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------~Dsa 182 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------PDSA 182 (377)
T ss_pred HHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC--------cccc
Confidence 3466677888899999999999865 57788888999999999999999999999998873 4455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.-|-.-|.....+|+|++|..+++.++++
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 66667778888889999999999988875
No 297
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=5.2 Score=46.17 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 001523 79 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 158 (1060)
Q Consensus 79 GdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~l 158 (1060)
+.+..-+.++..+++.+.+. ...-.....-..|..+|+..++|.+|+......+.-+++. .|...+..++..=..+
T Consensus 102 ~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 44556667777777765543 1111223345578899999999999999999998887765 4445566777777888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 159 YYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 159 Y~~lGdyeeAleyyekALei~ee~~g~d~p~~-a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
|+.+.+..+|...+.-|-......+. .|.. +..-..=|.++....+|.-|..||-+|++-+...
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~ 242 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL 242 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence 99999999999888877766555543 2332 3333445777777899999999999999887554
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.19 E-value=0.082 Score=40.60 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 001523 87 YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 128 (1060)
Q Consensus 87 ~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle 128 (1060)
+|++||++ +|....+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788866 58889999999999999999999863
No 299
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=12 Score=46.21 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 188 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p 188 (1060)
.+.+-|.-+++..+|..++++|...+..+..- ..+...+....+|+.||..+.+.+.|.+++++|-+. ++
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------DR 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------cc
Confidence 44556667778899999999999998875321 223456889999999999999999999999999774 22
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 189 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 189 ~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
........+-.+....|+-++|+.++........
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 2333444455666778889999999888776653
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.14 E-value=4.1 Score=47.77 Aligned_cols=153 Identities=16% Similarity=0.043 Sum_probs=107.4
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLY 118 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~---------------------d~p~~A~A~~~LA~ly~ 118 (1060)
...-...+|++++.++..+|++..|.+++++||-.+++.+.. .++....+++.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 344567799999999999999999999999999887643211 12334567777788888
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 001523 119 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 198 (1060)
Q Consensus 119 ~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA 198 (1060)
+.|-+..|+++++-.+.+- +. .+-..+++.|-....+.++|+--++.++.......+. .....-...+.+|
T Consensus 115 ~RG~~rTAlE~~KlLlsLd-----p~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLD-----PD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhcC-----CC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 8999999999998888762 22 1234455666666678888887777777655421110 0000113456778
Q ss_pred HHHHHCCCH---------------HHHHHHHHHHHHHH
Q 001523 199 MMEEGLGNV---------------HVALRYLHKALKCN 221 (1060)
Q Consensus 199 ~iy~~lGdy---------------dEAie~yekALei~ 221 (1060)
.+++.+++- ++|.+.+++|+...
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888888 89999999998865
No 301
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.13 E-value=8.7 Score=44.19 Aligned_cols=148 Identities=13% Similarity=-0.009 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 001523 102 YHRMTAGAYSLLAVVLYHTGD------------FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 169 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly~~lGd------------yeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAl 169 (1060)
.+|....+|..+....-..-. .+.-+.+|++||+. .+++..+... +-.++....+-++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~~L~l~---~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSERLLLG---YLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhCCHHHHH
Confidence 456666666666655444322 34445556666654 2334333333 334445666777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHH
Q 001523 170 KYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAI 239 (1060)
Q Consensus 170 eyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d----------hp~~a~a~~nL 239 (1060)
+-+++++.. .+....+...|...-......-.+.+....|.+++.......... ......++..+
T Consensus 86 ~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 86 KKWEELLFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 777777764 223444444454444444455678899999999998876654332 23456777888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 001523 240 AIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 240 A~ly~~lGdyeEAie~lqkALeI 262 (1060)
+..+...|..+.|+..++-.+++
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHH
Confidence 88999999999999999988876
No 302
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=13 Score=48.14 Aligned_cols=175 Identities=16% Similarity=0.118 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 145 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~ 145 (1060)
..+-.+|...++.|...+|++-|-+|- +| ..|...-.+....|.|++-+.|++-|.+-.++- .
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~- 1167 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---Y- 1167 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---c-
Confidence 356667888999999999999887762 22 356666777788899999998888776554321 0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHH
Q 001523 146 PDTMKSYGDLAVFYYRLQHTELALKYV----------------KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 209 (1060)
Q Consensus 146 p~~a~ay~nLA~lY~~lGdyeeAleyy----------------ekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydE 209 (1060)
+-..|-.+|.+.++..+-.+++ +..+--..+++ -....-+..||..+..+|+|+.
T Consensus 1168 -----id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~----y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1168 -----IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLL----YSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred -----chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHH----HHHhhhHHHHHHHHHHHHHHHH
Confidence 1112223333333333332221 11100000000 0012334567888888899998
Q ss_pred HHHHHHHHHHHH--HH---------------hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 210 ALRYLHKALKCN--QR---------------LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 210 Aie~yekALei~--ee---------------ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
|.+..++|-... ++ +-|-.-.-.+.-+-.|-..|...|-|++-+.+++.+|-+-+..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 888877763321 11 0111111122334556677888888888888888777665443
No 303
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=16 Score=43.17 Aligned_cols=183 Identities=16% Similarity=0.126 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~eki-lg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
+|..++.....++.+.+|.+|..+-...+...... ....+-..+..|+.+..+|...|+...-...+...+.... +.
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lr 202 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT--LR 202 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hc
Confidence 34444444455566789999998887766542110 0001233567888999999999997766666666555532 23
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
.+....+...+.|-..|..-+.|+.|.....++..- + ...+...++.++.+|.+..-+++|..|.+++..|+...
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka- 277 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA- 277 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC-
Confidence 344455666777788888888899988877665421 0 01233668888999999999999999999999998866
Q ss_pred HhcCCCcHHH---HHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 223 RLLGPDHIQT---AASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 223 eilG~dhp~~---a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
+.+... -.+...+..+-..+|++.+-..+.+
T Consensus 278 ----pq~~alGf~q~v~k~~ivv~ll~geiPers~F~Q 311 (493)
T KOG2581|consen 278 ----PQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQ 311 (493)
T ss_pred ----cchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcC
Confidence 222211 1222233344456788876544433
No 304
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.97 E-value=0.13 Score=60.89 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhH
Q 001523 111 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 190 (1060)
Q Consensus 111 ~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~ 190 (1060)
-.-|.-++.-+.|+.|+..|.+|+++ ++..+..+.+-+.++.+.++|..|+.-+.+|+++ .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34455666778999999999999997 4667888889999999999999999999999984 5778
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+.+|+.-|.++..++++.+|+..|+....+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 8999999999999999999999999887765
No 305
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.87 E-value=1.5 Score=46.66 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=97.8
Q ss_pred cCCHHHHHH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 78 KGKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 78 qGdyeEAi~-~fekALel~ekilg~d~p~~A~A~~~LA~ly~~-----lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
+|+|-++++ -|++|.++++..+.. ...+..++.+|..+.. .++...|+++|..+-+. ....+
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCde--n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~a 107 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDE--NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQA 107 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHH
Confidence 345545443 466666666655433 2345667777765554 45788999999888663 23556
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHH---------------------
Q 001523 152 YGDLAVFYYRL-----Q--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG--------------------- 203 (1060)
Q Consensus 152 y~nLA~lY~~l-----G--dyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~--------------------- 203 (1060)
..++|.+++.- + +.++|++|+.++.++ . ...+.++|..+|..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl-------~---~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL-------E---DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAEL 177 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC-------C---CchHHHHHHHHHhccchhhcccCCCCCCCcchhhh
Confidence 77888877642 2 367888888888764 1 12334444444443
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHc
Q 001523 204 ---LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 204 ---lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~----lGdyeEAie~lqkALeI~rkll 267 (1060)
..+.++|.++..+|-++. ...+.-|+.+.|.. -.+.++|..+-.+|+++.+.+.
T Consensus 178 ~~~~kDMdka~qfa~kACel~----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 355677777766665542 23455566666653 2466789989889988876653
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=7 Score=48.25 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
.++..|.-.+...+|..++++|...+...-.. ..+...+.....|+.||..+.+.+.|.+++++|-+.- +
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d--------~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD--------R 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------c
Confidence 45667888899999999999999998764321 3345568899999999999999999999999997752 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 180 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~e 180 (1060)
...-....+-.+...-+.-++|+.+......+..
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 2233344455555667888999998887766543
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.41 E-value=5.5 Score=55.40 Aligned_cols=191 Identities=19% Similarity=0.096 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 001523 43 FVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 122 (1060)
Q Consensus 43 ~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGd 122 (1060)
.+.+++....+..........-++.+++.|++....|+++.|..++-.|.+. ....++...|.+++..|+
T Consensus 1648 pILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1648 PILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGD 1717 (2382)
T ss_pred HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhcc
Confidence 3444444444444344557778999999999999999999999988888754 256688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCCChhHH
Q 001523 123 FNQATIYQQKALDINERELG---------LDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTA 191 (1060)
Q Consensus 123 yeeAle~yqKALeL~ek~~g---------~d~p~~a~ay~nLA~lY~~lGdy--eeAleyyekALei~ee~~g~d~p~~a 191 (1060)
-..|+.++++.+..+..... ........+...++......+++ +.-+++|..+.++..+..+ .+-..+
T Consensus 1718 ~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~-~hy~l~ 1796 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED-KHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC-ceeeHH
Confidence 99999999999987643211 11111233455566666666664 4456788888887553221 122222
Q ss_pred HHHH-----HHHHHHHHCCCHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001523 192 ATYI-----NVAMMEEGLGNVHV---ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 244 (1060)
Q Consensus 192 ~a~~-----nLA~iy~~lGdydE---Aie~yekALei~eeilG~dhp~~a~a~~nLA~ly~ 244 (1060)
..|. ..+..+...|++.. |+-+|.+++....+..-..-|.....|..+|..+.
T Consensus 1797 ~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~ 1857 (2382)
T KOG0890|consen 1797 KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHIS 1857 (2382)
T ss_pred HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhc
Confidence 1111 11222334556655 55555566554322221223444444555444443
No 308
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.33 E-value=1.8 Score=47.92 Aligned_cols=93 Identities=18% Similarity=0.042 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 001523 80 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 159 (1060)
Q Consensus 80 dyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY 159 (1060)
.-...+.++.+|++.+.+. ...+....+...||..|+..|+|++|+.+|+.+...+++. .-......++..+..|+
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH
Confidence 3446788889999888765 3456677788899999999999999999999998877652 22344667788899999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 001523 160 YRLQHTELALKYVKRAL 176 (1060)
Q Consensus 160 ~~lGdyeeAleyyekAL 176 (1060)
..+|+.+..+.+.-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 99999998887765543
No 309
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.19 E-value=9.3 Score=43.97 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001523 81 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 160 (1060)
Q Consensus 81 yeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~ 160 (1060)
.+..+.+|++||+. ++.....+..+-.++....+-++...-+++++... +..+.+...|...-...+
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 34556667777755 23333333333344455567777777777777652 345556666665555555
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 161 RLQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 161 ~lGdyeeAleyyekALei~ee~~g~d----------~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
..-.+......|.+++..+....... ....+.++.++...+...|..+.|+..++..+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66678999999999999876654322 23456777888889999999999999999999876
No 310
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.10 E-value=5 Score=47.32 Aligned_cols=139 Identities=16% Similarity=0.052 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~L--A~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
...+..+..++..++|..|.++|...+.. + ..... ...+..| |..++..-+|.+|.+++++.+......
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 45566788999999999999999998764 1 22212 3344444 556677889999999999887653210
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
......+..+..+ -++...+.............-....+..++..|.--..+|+|+.|...+-+++++..
T Consensus 203 --~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 203 --NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred --HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 0001111112111 122222222222211110000122333444445555678999999999999998763
No 311
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=25 Score=43.04 Aligned_cols=130 Identities=14% Similarity=-0.094 Sum_probs=82.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 001523 74 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 153 (1060)
Q Consensus 74 ~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~ 153 (1060)
.+...+..+. ..+.+++...... .|..+.....-|..+...|+.+.|+.++..++....+ .-...+++
T Consensus 240 ~~~~~p~~d~--~~~~~~Ll~~~~~----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~f 307 (546)
T KOG3783|consen 240 FVLGTPNPDG--EECEKALKKYRKR----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVF 307 (546)
T ss_pred HHcCCCCccH--HHHHHHhHHHHHh----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHH
Confidence 3344444444 3344444444333 3455666777788888889999999999999883322 12355788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHH
Q 001523 154 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE--------GLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 154 nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~--------~lGdydEAie~yekALei~e 222 (1060)
.+|.++..+.+|..|..++....++. +...+..-+..|.||. ..|+-++|..+++...++..
T Consensus 308 E~aw~~v~~~~~~~aad~~~~L~des-------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~ 377 (546)
T KOG3783|consen 308 ERAWLSVGQHQYSRAADSFDLLRDES-------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 99999999999999999998877642 2222222233334432 34577777777766655543
No 312
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.12 E-value=17 Score=44.32 Aligned_cols=53 Identities=17% Similarity=0.003 Sum_probs=25.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 201 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 201 y~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
|+..++..-|...|+-.|..+ ++.+.....| ...+..+++-..|..+|++++.
T Consensus 411 y~cskD~~~AfrIFeLGLkkf-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKF-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHh
Confidence 344555555555555555443 3334333333 2333445555555555555544
No 313
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.93 E-value=16 Score=45.22 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 70 ESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 70 elA~~yl~qGdyeEAi~~fek------ALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+|..+..+|+|.+|.++|.+ |++++... -++.++.-|+..|.-++-..+.++-.+.+....
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-- 704 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-- 704 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC--
Confidence 457788888999999888865 34433211 234566666777777666666666555544322
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYV------KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK- 216 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyy------ekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek- 216 (1060)
.|. ..|.++...|+.++|+... +-++++.+++. ......+..++..+..+..+.-|.+.|++
T Consensus 705 -ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 705 -EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred -CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 121 1356666777777777643 34455544321 11122233333333344444444444333
Q ss_pred ------------------HHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 217 ------------------ALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 217 ------------------ALei~eeilG~dhp~-~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
|..++++ ||. ....|+-.|..+....+|++|.+.|-+|
T Consensus 774 gD~ksiVqlHve~~~W~eAFalAe~-----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 774 GDLKSLVQLHVETQRWDEAFALAEK-----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccHHHHhhheeecccchHhHhhhhh-----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2222221 222 2234555666667777777777766655
No 314
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=6.8 Score=44.36 Aligned_cols=147 Identities=10% Similarity=-0.017 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
-+..+........-++-++-+.+.++..+... .....+.++.++|..|.+.++.+.+.+++.+.++-.... .-..+
T Consensus 78 kfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiD 153 (412)
T COG5187 78 KFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKID 153 (412)
T ss_pred ehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchh
Confidence 34444444444445666677777776665442 245678999999999999999999999999988765432 22344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
...+-..||.+|..+.-.++.++.....+ ++ |.+....-......|.......+|.+|..++-.++.-++.
T Consensus 154 v~l~kiRlg~~y~d~~vV~e~lE~~~~~i---Ek--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 154 VFLCKIRLGLIYGDRKVVEESLEVADDII---EK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHH---Hh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 56666778888866554555554444433 33 2232222233333566777788899999888888776543
No 315
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.36 E-value=20 Score=43.13 Aligned_cols=134 Identities=17% Similarity=0.166 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHH--
Q 001523 64 DGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI--YQQKALDINE-- 138 (1060)
Q Consensus 64 dAraLlelA~~yl~qGd-yeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle--~yqKALeL~e-- 138 (1060)
.+.-++..|.-+...|. -++|+.+++.+++.. .++. .+ .+.-.. +-...|.+|+. .+-+.+.+-.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-----~yD~---ec-~n~v~~-fvKq~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-----NYDI---EC-ENIVFL-FVKQAYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----cccH---HH-HHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35566777888999988 778888888887652 1111 11 111111 11123444432 2333333211
Q ss_pred HhcCCC--ChhHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 001523 139 RELGLD--HPDTMKSYGDL--AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 214 (1060)
Q Consensus 139 k~~g~d--~p~~a~ay~nL--A~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~y 214 (1060)
...|-. ........+.| |..++.+|+|.++.-|..-..++. | ...+|..+|.++....+|++|..++
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111111 11122333344 566778999999998887777652 3 3578889999999999999999998
Q ss_pred HH
Q 001523 215 HK 216 (1060)
Q Consensus 215 ek 216 (1060)
+.
T Consensus 519 ~~ 520 (549)
T PF07079_consen 519 QK 520 (549)
T ss_pred Hh
Confidence 75
No 316
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=46 Score=39.64 Aligned_cols=110 Identities=15% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 143 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~ 143 (1060)
.+..++.+...|-..|+...-..++..-+... .++.+....+...+.|=..|...+.|++|.....++.--- ..
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~ 241 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE----AA 241 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc----cc
Confidence 46777888888888898877777776666543 3445667788888999999999999999988877654210 01
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 144 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 144 d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
.....++.++.+|.+..-+++|..|.+|+.+|+...
T Consensus 242 snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 242 SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 223678889999999999999999999999998853
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.34 E-value=3.3 Score=44.67 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=59.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001523 161 RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 240 (1060)
Q Consensus 161 ~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA 240 (1060)
.+-.-++|+..|.++- +......+...+.||..|. ..+.++|+.+|.++|++.. .++.....++..||
T Consensus 118 sr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLa 185 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLA 185 (203)
T ss_pred hccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHH
Confidence 3333456666554432 3344456788888998877 6789999999999999873 22233456788899
Q ss_pred HHHHhcCChhHHHHH
Q 001523 241 IALSLMEAYPLSVQH 255 (1060)
Q Consensus 241 ~ly~~lGdyeEAie~ 255 (1060)
.+|..+|+++.|.-+
T Consensus 186 s~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 186 SIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHhcchhhhhhh
Confidence 999999999998654
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.18 E-value=2.5 Score=39.06 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
.-...-|.-++...+.++|+..++++|+.. .+.+....++-.|..+|...|+|.+++.+...-+++.+++-
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334445666678889999999999999876 34456777888899999999999999999888888876653
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.93 E-value=0.12 Score=58.99 Aligned_cols=92 Identities=24% Similarity=0.310 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHH
Q 001523 114 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 193 (1060)
Q Consensus 114 A~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a 193 (1060)
|.-.+..|.++.|+++|..|+.+ .+..+..|...+.++..+++...|+.-|..|+.+ +++.+.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 33344578899999999999886 4667888999999999999999999999999985 4556677
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
|-.-|.....+|+|.+|..++..++++.
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 7778899999999999999999888753
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.71 E-value=8.5 Score=40.90 Aligned_cols=148 Identities=11% Similarity=-0.034 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
|..|++.+.-.++-..|..||++.. .+..++|+..|...-+ ......| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~lek----tg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLEK----TGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHHh----cCCCcch--HHH
Confidence 4455666666666666777766543 3445566655544322 1112222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 229 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a--~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh 229 (1060)
....|.+....|+...|+.+|.++-.- ...|... .+...-|.++...|-|++-.... +.+-+..+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCC
Confidence 667778888888888888888775441 1122222 23444566666777766543333 23334556
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 230 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 230 p~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+....+...||...++.|++.+|..+|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777888888888888888888876543
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.37 E-value=2.3 Score=41.71 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=61.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l----GdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
+|..++.+|++-+|+++.+..+.... .+......+..-|.+++.+ .+.+-=..|+.-+++-+.+.... .|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 57788999999999999999886632 2233335556667766554 34444445555555555443222 34
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
..+..++.||.-+.....|+++....+++|.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566777777665555555666665555554
No 322
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=11 Score=43.49 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001523 82 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 161 (1060)
Q Consensus 82 eEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~ 161 (1060)
++-++-+.+.++-.++.+|. .....++..+|..|.+.|+-+.|++++++..+-.-.. ....+..-+...||.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 34455566677766665443 4678899999999999999999999999887653322 2234556666778887765
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 001523 162 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 223 (1060)
Q Consensus 162 lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ee 223 (1060)
. +--.+..++|-.++++-+.-+..+...+| .|.......+|.+|..+|-.++.-+..
T Consensus 157 ~---~lV~~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 157 H---DLVTESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred H---HHHHHHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4 33444445555555553221222333444 677777788999999999888776543
No 323
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=27 Score=39.86 Aligned_cols=135 Identities=9% Similarity=0.073 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 001523 121 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 200 (1060)
Q Consensus 121 GdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~i 200 (1060)
..-++-++-+.+.++-.+...| ......++.|+|..|...++.+.+.+.+.+.+.-...+. -..+...+...||.+
T Consensus 89 kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~ 164 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLI 164 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHh
Confidence 3445555666666665554322 345788999999999999999999999999887655443 234455566778888
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 001523 201 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 264 (1060)
Q Consensus 201 y~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~r 264 (1060)
|..+.-.++.++.....++ +-...+......+| .|.......+|.+|-.++-.++..+.
T Consensus 165 y~d~~vV~e~lE~~~~~iE---kGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 165 YGDRKVVEESLEVADDIIE---KGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hccHHHHHHHHHHHHHHHH---hCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 8766555555555444433 22112222333444 46666777888888888877776554
No 324
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=11 Score=44.42 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---QR 223 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~---ee 223 (1060)
.+-.++..+|..|...|+++.|+++|-++-..+.. ....+..+.|+-.+-..+|+|..-..+..+|.... ..
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 35678999999999999999999999998887643 34567888889888899999998888888876652 11
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 224 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 224 ilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
. ...-+..+.|+..| +.+.+++|..|..+|-.+
T Consensus 223 ~-~q~v~~kl~C~agL--a~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 L-AQEVPAKLKCAAGL--ANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred H-HHhcCcchHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence 0 01112234455444 445566888888877644
No 325
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.92 E-value=3.9 Score=48.35 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINE 138 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~---d~p~~A~A~~~LA~ly~~lGdy---eeAle~yqKALeL~e 138 (1060)
+..+++.|+.++....|.+|+.++-.|-+.+-..... .--..+..-..+-+||+.+.+. ..|..-+.+|-+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 4567778999999999999999998887776433100 0011223334556777776653 345554444444443
Q ss_pred Hhc-----------CCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 139 REL-----------GLDHPD---TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 139 k~~-----------g~d~p~---~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
..+ +.+.|. +++.+...|.+.+.+|+-++|.++++.|...+.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 333 344444 345567789999999999999999999998877654
No 326
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.88 E-value=44 Score=37.43 Aligned_cols=142 Identities=15% Similarity=0.035 Sum_probs=79.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCCChhHHH
Q 001523 114 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAA 192 (1060)
Q Consensus 114 A~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdye-eAleyyekALei~ee~~g~d~p~~a~ 192 (1060)
|..+...|++.-|.++..-.++.+.+.....+ .....+++.++.....-+ +-.++..+|++.. +. +........
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~ 91 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPE 91 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHH
Confidence 34445556666666666666666655322222 223456676766665433 4556777888876 32 333334567
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCChhHHHHHHHHHH
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKA-----------LKCNQRLLGPDHIQTAASYH-AIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekA-----------Lei~eeilG~dhp~~a~a~~-nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
.+..+|..|+..|++.+|..+|-.+ +..+... +..+ ....+. .....|...++...|...+..-+
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~~~--e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GYPS--EADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cCCc--chhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7888999999999999999988321 1111111 1111 122232 33345677899999988887766
Q ss_pred HHH
Q 001523 261 QIL 263 (1060)
Q Consensus 261 eI~ 263 (1060)
+.+
T Consensus 169 ~~~ 171 (260)
T PF04190_consen 169 SKL 171 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 327
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.79 E-value=9 Score=45.50 Aligned_cols=117 Identities=16% Similarity=0.033 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERE----LGLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLL 179 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~----~g~d~p~~a~ay~nLA~lY~~lGdy---eeAleyyekALei~ 179 (1060)
+..++..|.+.+....|.+|+..+..|-+.+... +.. -..++..-..+.+||+.+.+. ..|..-+.+|-+-+
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~-VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLEL-VDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHh-hcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3455667788888899999998888886665321 111 112444556778888887764 45655555555554
Q ss_pred HHhCCC-----------CChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 180 HLTCGP-----------SHPNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 180 ee~~g~-----------d~p~~---a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
...+|. ..|.. ...+...|.+.+.+|+-++|.++++.|.....++
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 444443 33433 4556678999999999999999999998877655
No 328
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.72 E-value=3.9 Score=48.11 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--LG 142 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~--~g 142 (1060)
-+.+.++|..|+..|+++.|++.|.++-+.+.. ....+..+.++-.+-..+|+|..-..+..+|....... ..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence 567888999999999999999999998877754 35677888888889999999999998888887652100 00
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 176 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekAL 176 (1060)
..-+ ..+.+.-|.+...+++|..|..+|..+.
T Consensus 225 q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 225 QEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111 2334445555566679999999887654
No 329
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=12 Score=43.05 Aligned_cols=131 Identities=10% Similarity=0.042 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHH
Q 001523 124 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 203 (1060)
Q Consensus 124 eeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~ 203 (1060)
++=++-+.+.++-.++..|. .....++.+.|..|++.|+-+.|++.+.+.++-.-... ...+...+...||..|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhcc
Confidence 33445555555555554443 45788999999999999999999999998877544432 234556667788888765
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 204 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 204 lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
..-.. +.+++|-.+.++-...+..+...+| .|..+....+|.+|-.+|-.++..+
T Consensus 157 ~~lV~---~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVT---ESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHH---HHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 44333 3444444444443333334445555 4666667788888888888777654
No 330
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.35 E-value=5.2 Score=47.24 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC------hhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH------PNT----AATYINVAMMEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~------p~~----a~a~~nLA~iy~~lGdydEAie~yekAL 218 (1060)
..+-..=|..++++++|..|.--|..||+++.+-..... .++ ..+.-.|..||..+++.+.|+.+..+++
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344455567778889999999999999998765321111 111 2344578999999999999999999888
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 219 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 219 ei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+. |.+...+...|.+++.+.+|.+|...+--+.-++
T Consensus 256 ~ln--------P~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 256 NLN--------PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred hcC--------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 5566677788999999999999988777665554
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.16 E-value=0.71 Score=33.83 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
.+++.+|.+|..+|++++|+.+|+++++.+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 378999999999999999999999998753
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.14 E-value=0.68 Score=33.95 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Q 001523 316 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 347 (1060)
Q Consensus 316 elL~~Lg~~y~~qGqyeEAl~~YeqALkL~~k 347 (1060)
+++..+|.+|..+|++++|+.+|++.++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999987654
No 333
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.94 E-value=17 Score=43.01 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV--FYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~--lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
.-....+..++..++|..|...+...+.. + ... .. ...+..|+. .++..-++++|.++++..+......
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 34556777888999999999999988763 1 111 11 345555544 4556778899999999887642210
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 186 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
......+..+..+ -++...+.............-.......++..|.=-...|+|+.|...+-++++++.+
T Consensus 203 --~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 --NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred --HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0001111112211 1222222222222111100001222233333344444689999999999889987654
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.60 E-value=73 Score=42.44 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKAL------KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekAL------ei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
+..-|.+|...|+.++|++.|+.+. .++.+..... ......-..|+.-+..++++-+|.+.+++.+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 3456778888999999999887654 3333322111 11222224566677788888888776665543
No 335
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=87.52 E-value=0.31 Score=32.61 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 001523 862 NGNSNVPEFIPGP 874 (1060)
Q Consensus 862 ~~~~~~~~f~p~~ 874 (1060)
.+||++.||||+.
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999973
No 336
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.47 E-value=1.1 Score=35.70 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 234 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 234 ~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
.+|..||.+-...++|++|+.-|+++|++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 468889999999999999999999999999887654
No 337
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.35 E-value=17 Score=41.87 Aligned_cols=70 Identities=23% Similarity=0.139 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
.|+.+..+.-+++-....+..+..+-++...+||++ .+..+.+|..||.--. --.-+|..++++||+..+
T Consensus 178 tCd~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 178 TCDTDFLRPEDEIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE 247 (556)
T ss_pred eccccccChHHHHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH
Confidence 455555666666666777777888888888888876 3566777777775433 346778888888887643
No 338
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.27 E-value=24 Score=37.61 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
.|.-+.-+...+..++|+..|...-+. ..-..-.-+.+..|.+....|+-..|..+|.++-... ..|.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lekt------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~ 128 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKT------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQ 128 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcc
Confidence 344566667788999999888765432 2222234567788999999999999999998875431 1222
Q ss_pred HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 148 TM--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 148 ~a--~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.. .+...-|.++...|-|++-.... +.+.++.++....+.-.||..-++.|+|.+|..+|.....
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22 23455677788888887655433 3344567888888899999999999999999999998765
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.98 E-value=32 Score=45.54 Aligned_cols=67 Identities=18% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALY------LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALe------i~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
+..-|.+|...|+.++|++.|+.+.. +..+.. .........-..|+.-+..++++-+|-+.+.+.+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 45567888888889999888876543 333322 12222333335667777778887777776665543
No 340
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.85 E-value=76 Score=39.40 Aligned_cols=176 Identities=15% Similarity=0.006 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 141 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~ 141 (1060)
..+-..+..........|+++...-+|++++--+. ..-..|...+......|+..-|-..+.++.++..+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-- 363 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-- 363 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC--
Confidence 33444455555666788999999999999986653 23457778888888889999999999999888632
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
....+...-+.+-...|++..|...|++...- .+....+-..-+.+...+|+.+.+.. +...+...
T Consensus 364 -----~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~ 429 (577)
T KOG1258|consen 364 -----KTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI 429 (577)
T ss_pred -----CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh
Confidence 23344555666777889999999999987763 24455555566777788899888874 22222221
Q ss_pred HHhcCCCcHH-HHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHH
Q 001523 222 QRLLGPDHIQ-TAASYHAIAIAL-SLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 222 eeilG~dhp~-~a~a~~nLA~ly-~~lGdyeEAie~lqkALeI~ 263 (1060)
..|..+.. ....+...+... .-.++.+.|...+.+++++.
T Consensus 430 --~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 430 --YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred --cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 11223332 234444555543 45678889999988888763
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=8.7 Score=48.78 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 74 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 74 ~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+++....|+-|+ .+++.. +.+....+.++...|..++..|+|++|..+|-+++...
T Consensus 343 iL~kK~ly~~Ai-------~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 343 ILFKKNLYKVAI-------NLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHhhhHHHHH-------HHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 444454455544 444433 23445677888999999999999999999999998764
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.70 E-value=0.94 Score=31.04 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 150 ~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.++.++|.+|..++++++|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36789999999999999999999999874
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.62 E-value=0.96 Score=30.98 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.++..+|.+|..++++++|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 344
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=58 Score=37.14 Aligned_cols=136 Identities=14% Similarity=0.028 Sum_probs=87.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 001523 75 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 154 (1060)
Q Consensus 75 yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~n 154 (1060)
....|+|=+|.++|+..+-...+. ..+.......+.-+.++...++..-|..+.-..++.+++..- .+...-..+
T Consensus 16 ~~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~---ad~~~~~an 90 (312)
T KOG3024|consen 16 SIELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEV---ADSLLKVAN 90 (312)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHh---hHhHHHHHH
Confidence 345668888888887776554443 344555666777788888888888888877777777655211 111222346
Q ss_pred HHHHHHHcCCHHHHH-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 155 LAVFYYRLQHTELAL-KYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 155 LA~lY~~lGdyeeAl-eyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
++.+....+.-+..+ .+.+++++...+.. .........+..||..++..+++.+|..+|-.
T Consensus 91 l~~ll~e~~~~eper~~~v~raikWS~~~~-~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 91 LAELLGEADPSEPERKTFVRRAIKWSKEFG-EGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 666666666554444 45567777655531 22222345677799999999999999999854
No 345
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.32 E-value=43 Score=38.72 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.+.++.+-...+..-..+-...+....+...+..--......+.+...||.+|...++|..|...+.- +.+-.-....+
T Consensus 61 srqllsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d 139 (399)
T KOG1497|consen 61 SRQLLSLFDVELSILEDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYD 139 (399)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhh
Confidence 44555444333333344444444444444432211112345677888999999999999988876532 21110000112
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.......+..+|.+|...++..+|..|..++--+.... .+...........|+++...++|-+|...|.+...
T Consensus 140 ~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 140 VEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778899999999999999999998876554332 12222334445568888889999888877776544
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.21 E-value=11 Score=44.69 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------hh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH------RM----TAGAYSLLAVVLYHTGDFNQATIYQQKAL 134 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~------p~----~A~A~~~LA~ly~~lGdyeeAle~yqKAL 134 (1060)
.++.+.-|..++.+++|..|.--|..||+++.+..-... .+ ...+...|..||..+++.+.|+.+..+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 345555677888899999999999999998765321111 11 12355678999999999999999999988
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 135 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 135 eL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
.+ +|....-+...|.|+..+.+|.+|..-+.-|.-++--.
T Consensus 256 ~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 256 NL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred hc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 34455667788999999999999999888777666443
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=86 Score=38.95 Aligned_cols=175 Identities=14% Similarity=0.005 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC----------
Q 001523 78 KGKLEDAVTYGTKALAKLVA----VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------- 143 (1060)
Q Consensus 78 qGdyeEAi~~fekALel~ek----ilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~---------- 143 (1060)
...|++|...|.-|.....- .+-..+|.-...+..+|.++..+|+.+.|..+.+++|-.+.+...+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577888888777765421 0112467788899999999999999999999999999887765321
Q ss_pred ---CCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001523 144 ---DHP---DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHK 216 (1060)
Q Consensus 144 ---d~p---~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d-~p~~a~a~~nLA~iy~~lGdydEAie~yek 216 (1060)
.++ ....+++..-..+...|-+..|.++++-.+.+ .+. +|.. +.+.+-.......+|+==+++++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~--~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLG--ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchh--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 12333334445556789999999999887775 222 3322 222222223334444444444443
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHH
Q 001523 217 ALKCNQRLLGPDHIQTAASYHAIAIALSLMEA---YPLSVQHEQTTLQIL 263 (1060)
Q Consensus 217 ALei~eeilG~dhp~~a~a~~nLA~ly~~lGd---yeEAie~lqkALeI~ 263 (1060)
.-... .+. .-+.... -..||..|..... .+.|...+.+|+.++
T Consensus 404 ~e~~n-~l~--~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENMN-KLS--QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhhc-cHh--hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 32211 110 0111111 2245666665554 566777888887764
No 348
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=36 Score=42.02 Aligned_cols=175 Identities=14% Similarity=0.027 Sum_probs=101.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHh----CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 001523 162 LQHTELALKYVKRALYLLHLT----CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--------- 228 (1060)
Q Consensus 162 lGdyeeAleyyekALei~ee~----~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d--------- 228 (1060)
...|++|...|.-|...+.-. .-..+|..+..+..+|.++..+|+.+-|.++.+++|-...+++.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345788888888777764220 0124677788999999999999999999999999998887765432
Q ss_pred ----cH---HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001523 229 ----HI---QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTR 300 (1060)
Q Consensus 229 ----hp---~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~d-h~~t~~al~~La~l~~k~~e~AeAl~~~~~ 300 (1060)
++ ....+++..-..+.+.|-+..|.++++-.+.+ ++. +|.....+.-...+..+.++.-..+.+...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 11223333334455788888999888876665 444 554333322222223333333222221110
Q ss_pred C-CchhhhhcCCCcHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhh
Q 001523 301 K-PDASIASKGHLSVSDLLDYINPSHDTKGR---NVSTLKRKTYVAKVKG 346 (1060)
Q Consensus 301 ~-~d~~~a~~~~~svselL~~Lg~~y~~qGq---yeEAl~~YeqALkL~~ 346 (1060)
. -.... .+.+. .-..|+..|..+.. -+.|+..+.+|++.+.
T Consensus 406 ~~n~l~~----~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 406 NMNKLSQ----LPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhccHhh----cCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0 00000 11111 11234555555555 4569999999999887
No 349
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.93 E-value=1.6 Score=34.76 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g 142 (1060)
.+|..||.+....++|++|+.-|+++|++.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 47889999999999999999999999999877643
No 350
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.77 E-value=3.2 Score=48.11 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 131 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yq 131 (1060)
..+..++..|+.++.+++++.|...|..|..++..++|..+.....+++..|..++..++++.+.-.+-
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 346678889999999999999999999999999999999999999999999999999988877665443
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.75 E-value=3.8 Score=49.97 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
+..+..++.-+..++.+|+.-+|..++..|+.+... +. .-.++..||.++.+.|...+|--.+..|+.
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~------ 277 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HN-KDIALLSLATVLHRAGFSADAAVILHAALD------ 277 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----cc-ccchhhhHHHHHHHcccccchhheeehhcc------
Confidence 333333333344445579999999999999987532 21 223577899999999999999877766655
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+.+....-++.+|.+|.+++.|.....+|..+.+..
T Consensus 278 --dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 278 --DADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred --CCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 333344457889999999999999999998877653
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.67 E-value=6.5 Score=48.08 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 149 MKSYGDLAVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 227 (1060)
Q Consensus 149 a~ay~nLA~lY~-~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~ 227 (1060)
.+.+.+++..|+ .+|+.-+|..++..++-.... +. .-.++..||.++.+.|...+|--.+..|+.-+
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~-kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------ 279 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HN-KDIALLSLATVLHRAGFSADAAVILHAALDDA------ 279 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----cc-ccchhhhHHHHHHHcccccchhheeehhccCC------
Confidence 345566776665 579999999999999875322 21 23467789999999999999988887776644
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 228 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 228 dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
+.....++.++.++..+++|.....+|..+++.
T Consensus 280 --~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 --DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred --ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333444778899999999999888888877654
No 353
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.60 E-value=10 Score=39.61 Aligned_cols=92 Identities=20% Similarity=0.131 Sum_probs=69.7
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~e 138 (1060)
.|...-...|++....-+..++.+++..++...- .+ .|....+...-|.++...|+|.+|+.+++.+.+
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALr-vL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--- 72 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLDALR-VL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--- 72 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHHHHH-Hh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---
Confidence 3444556678888888889999999988775443 32 477788888999999999999999999998643
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHH
Q 001523 139 RELGLDHPDTMKSYGDLAVFYYRLQHTE 166 (1060)
Q Consensus 139 k~~g~d~p~~a~ay~nLA~lY~~lGdye 166 (1060)
+.+....+--.++.|++.+++.+
T Consensus 73 -----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 -----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----cCCCChHHHHHHHHHHHHcCChH
Confidence 23445556667888888888754
No 354
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.80 E-value=2.6 Score=52.54 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=11.8
Q ss_pred ccceeeccCCCCCCCCcccC
Q 001523 765 SAVAINMTLPPGPGAVTAVA 784 (1060)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~ 784 (1060)
+|+.++-++||-|++.||++
T Consensus 548 PPlpggag~PPPPpplPg~a 567 (1102)
T KOG1924|consen 548 PPLPGGAGPPPPPPPLPGIA 567 (1102)
T ss_pred CCCCCCCCCCccCCCCCccc
Confidence 35566666666666666554
No 355
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.74 E-value=76 Score=39.44 Aligned_cols=128 Identities=14% Similarity=-0.041 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
......|..........|+++.....|++++--+- ..-..+...+......|+.+-|-..+.++.++...
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-- 363 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-- 363 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC--
Confidence 34455666666677778999999999999987652 24567888888888889999999888888887532
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 254 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie 254 (1060)
....+...-|.+....|+++.|...|+.+..-+ +....+-..-+.....+|+.+.+..
T Consensus 364 -----~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 -----KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -----CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH
Confidence 233455566888889999999999999887643 3344444444556677888877764
No 356
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.17 E-value=1.3e+02 Score=37.30 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCC
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGd---yeeAleyyekALei~ee~~g~ 185 (1060)
.+...+.+|...|+...|-..-.++..++++......-.....|+.++..-...-+ ++.-.+++.+++.+...
T Consensus 288 yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~---- 363 (656)
T KOG1914|consen 288 YLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI---- 363 (656)
T ss_pred HHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc----
Confidence 34455666677777666555555555555442111111122233333332222222 44555566666655322
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 186 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
+...+++++-..-.+..-...|...|.+|.+.-. +..|..++.++ .=|...++..-|...|+-.|..+
T Consensus 364 ---~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 364 ---DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred ---CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc
Confidence 2223344444444455556778888888766431 12233333332 12456899999999998887754
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.85 E-value=6.9 Score=46.56 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINE-RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~e-k~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
++..|..++..+|||..|++.+.-. ++.+ ..+.....-....++.+|.+|+.+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778889999999999876543 2211 12222333456778999999999999999999999998765543
No 358
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=84 Score=36.74 Aligned_cols=95 Identities=9% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001523 158 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 237 (1060)
Q Consensus 158 lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~ 237 (1060)
+..+.++.++|++++++..+....... ......+...+|+++...|+..++.+.+.+.-.......+-. +.+-..|+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e--~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKE--PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHH
Confidence 345667999999999999887766432 234566777899999999999999999998877765553332 32344455
Q ss_pred HHHHH-HHhcCChhHHHHH
Q 001523 238 AIAIA-LSLMEAYPLSVQH 255 (1060)
Q Consensus 238 nLA~l-y~~lGdyeEAie~ 255 (1060)
.++.- |...|++..+..+
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 55554 4566787655443
No 359
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=81.99 E-value=35 Score=38.12 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 83 DAVTYGTKALAKLVAVCGPYH---RMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 83 EAi~~fekALel~ekilg~d~---p~~A~A~~~LA~ly~~lGd----------yeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
+=..++..++.+....+-+.. ......+...|..|+.+-. .++|...|++|+++....+.+.+|...
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 445567777777766544322 2233344456777766533 358899999999998877778888888
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYR-LQHTELALKYVKRALYLL 179 (1060)
Q Consensus 150 ~ay~nLA~lY~~-lGdyeeAleyyekALei~ 179 (1060)
....|.+.+|+. +++.++|.+..++|+.-.
T Consensus 171 gLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 171 GLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788888877775 599999998888887754
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.50 E-value=65 Score=45.69 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=81.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 103 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 103 ~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
....+.+|..+|.+.+..|+++.|..++-.|.+.. ...++...|..++..|+-..|+.++++.+..+...
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 46788999999999999999999999998887742 45678899999999999999999999999775432
Q ss_pred CCCC---------ChhHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Q 001523 183 CGPS---------HPNTAATYINVAMMEEGLGNVH--VALRYLHKALKCNQ 222 (1060)
Q Consensus 183 ~g~d---------~p~~a~a~~nLA~iy~~lGdyd--EAie~yekALei~e 222 (1060)
+... ......+...++......++++ +-+.+|+.+.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1111 1111234555566666666644 44678888888764
No 361
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.22 E-value=9.1 Score=50.11 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=69.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHH
Q 001523 115 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 194 (1060)
Q Consensus 115 ~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~ 194 (1060)
.++.....|++|+..|++...-+ +....-.++.+.+|..+..+-.-..--+.|.+||..+..+.+ .+..---|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHH
Confidence 34444455666666665544332 122233566777887776543333333677777777777653 33334457
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 001523 195 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 235 (1060)
Q Consensus 195 ~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a 235 (1060)
..-|.+|..+|+|++-+++|.-|++.+ +.||.+...
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 591 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRL 591 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence 788999999999999999999999877 566655443
No 362
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.81 E-value=82 Score=36.56 Aligned_cols=110 Identities=13% Similarity=-0.038 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG 226 (1060)
..+.+...||.+|.+-++|..|...+.- +..-.-...-+.......+..+|++|...++..+|..+..++--+....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 4677888999999999999998876542 1110000000223346778899999999999999999998875443222
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001523 227 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 259 (1060)
Q Consensus 227 ~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkA 259 (1060)
.+...........|+++-..++|-+|.+.|-+.
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222334577777788887776655543
No 363
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.80 E-value=21 Score=35.13 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=61.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhcCCCcH
Q 001523 155 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRLLGPDHI 230 (1060)
Q Consensus 155 LA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~l----GdydEAie~yekALei~eeilG~dhp 230 (1060)
+|.-++..|++-+|++..+..+....+ +......+...|.++..+ .+.+-=..|+..+++.+.+...- .+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 467788999999999999998875322 222234556667777543 45666667777777777554322 23
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 231 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 231 ~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
..+..++.||.- -....+|++++..+++.+
T Consensus 76 ~~A~~L~~la~~-------l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 76 DSAHSLFELASQ-------LGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHh
Confidence 445555555544 344556666666555443
No 364
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=80.78 E-value=66 Score=38.10 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh----
Q 001523 80 KLEDAVTYGTKALAKLVAV-----CGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP---- 146 (1060)
Q Consensus 80 dyeEAi~~fekALel~eki-----lg~d~p~~A~A~~~LA~ly~~l----GdyeeAle~yqKALeL~ek~~g~d~p---- 146 (1060)
+|++|..+|..++..+.+. +.+.-.....+...++.+|..+ .+.+.-+.+.++=+++++.....-.+
T Consensus 139 ~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~ 218 (371)
T PF12309_consen 139 DFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYL 218 (371)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q ss_pred --------hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhCCCCChhH--------
Q 001523 147 --------DTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNT-------- 190 (1060)
Q Consensus 147 --------~~a~ay~nLA~lY~~lGd--------------------yeeAleyyekALei~ee~~g~d~p~~-------- 190 (1060)
.++.+|..|-.+.....+ ...|+.+|+.-+..+....+...+..
T Consensus 219 ~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~ 298 (371)
T PF12309_consen 219 NLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRP 298 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHH
Q ss_pred -HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Q 001523 191 -AATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 246 (1060)
Q Consensus 191 -a~a~~nLA~iy~~l---------GdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~l 246 (1060)
..+++.+|++|.+. +.+.+++.+|+.+++.+ ..|+........--.+...+
T Consensus 299 ~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~-----~~~~~~~~~~~~El~l~~EM 359 (371)
T PF12309_consen 299 YLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYC-----EKHPEAAEEFEEELELCREM 359 (371)
T ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHH-----HhChhhHHHHHHHHHHHHHH
No 365
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.68 E-value=11 Score=41.73 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 83 DAVTYGTKALAKLVAVCGP---YHRMTAGAYSLLAVVLYHTG----------DFNQATIYQQKALDINERELGLDHPDTM 149 (1060)
Q Consensus 83 EAi~~fekALel~ekilg~---d~p~~A~A~~~LA~ly~~lG----------dyeeAle~yqKALeL~ek~~g~d~p~~a 149 (1060)
+=..++..++.+....+-+ +.......+...|..|+.+- -.++|...|++|+.++...+.+.+|...
T Consensus 89 EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rL 168 (236)
T PF00244_consen 89 ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRL 168 (236)
T ss_dssp HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHH
Confidence 3445566666665553322 11222333444677666631 2378999999999999988888899888
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 001523 150 KSYGDLAVFYYR-LQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 150 ~ay~nLA~lY~~-lGdyeeAleyyekALei~ee 181 (1060)
....|.+..|+. +|+.++|++..++|++....
T Consensus 169 gl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 169 GLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 888888888765 89999999999999886544
No 366
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.54 E-value=18 Score=36.46 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---Chh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLD---HPD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d---~p~----~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
+..+|...+..+++-.|+-+|++|+.+.++..... ..+ ......|||..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999988763111 111 23456899999999999999999999887765443
No 367
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.33 E-value=13 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHCCCHHH-HHHHH
Q 001523 313 SVSDLLDYINPSHDTKGRNVS-TLKRK 338 (1060)
Q Consensus 313 svselL~~Lg~~y~~qGqyeE-Al~~Y 338 (1060)
.+.+++..||......|++.. |+.+|
T Consensus 585 ~~~elc~~Lg~rl~~~g~~~~~a~lcY 611 (1049)
T KOG0307|consen 585 EFSELCDMLGDRLENAGDLTSAAILCY 611 (1049)
T ss_pred hHHHHHHHHHHHHhhccchhhhhhHHh
Confidence 455666667666666664333 44444
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.29 E-value=12 Score=45.07 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 151 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~a 151 (1060)
-+.....++++++.++.... ++... -| ......++..+..+|-.+.|+...+.- ..
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~-----i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~ 323 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPN-----IP--KDQGQSIARFLEKKGYPELALQFVTDP----------------DH 323 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HH
T ss_pred HHHHHHcCChhhhhhhhhhh-hhccc-----CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HH
Confidence 34456788899877766411 11100 01 223556777777888877776654321 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.+.|| .++|+++.|.+..++. + ....|..||.+...+|+++-|.++|+++-+
T Consensus 324 rFeLA---l~lg~L~~A~~~a~~~----------~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 324 RFELA---LQLGNLDIALEIAKEL----------D---DPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHH---HHCT-HHHHHHHCCCC----------S---THHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhHHH---HhcCCHHHHHHHHHhc----------C---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 33444 4778887777654321 1 234677888888899999988888887643
No 369
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=1.2e+02 Score=40.50 Aligned_cols=186 Identities=14% Similarity=0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------hCCCC--ChhH-HHHHHHHHHHHHHCCCH
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------------------TCGPS--HPNT-AATYINVAMMEEGLGNV 207 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee------------------~~g~d--~p~~-a~a~~nLA~iy~~lGdy 207 (1060)
....+.+|.+|...|+..+|+.+|.+|..-.-+ ..|.. .+.. ...|...-+++..-+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 345677899999999999999999998764211 00111 1111 23333444555555666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 001523 208 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 287 (1060)
Q Consensus 208 dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k 287 (1060)
+.++++..+|++.. +.+.+..+..+.++=.-+..+|.+-+|...+-+ .++......++..|....-+
T Consensus 1000 E~vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHh
Confidence 66666666665543 455666777776666667778888777654432 23333333444444322222
Q ss_pred HHHHHHHHHhcCCCCch--------hhhhcCCCcHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHhhh
Q 001523 288 AFEQQEAARNGTRKPDA--------SIASKGHLSVSDLLDYINPSHDTKGRNVS-TLKRKTYVAKVKGN 347 (1060)
Q Consensus 288 ~~e~AeAl~~~~~~~d~--------~~a~~~~~svselL~~Lg~~y~~qGqyeE-Al~~YeqALkL~~k 347 (1060)
.++...-....-..... .........-...|..|-..+..+++|.+ |-.+|+.++++...
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 22211110000000000 00000011112345555566688899988 55778888888765
No 370
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=42 Score=43.02 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK 94 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel 94 (1060)
+....+..+...|..++.+|++++|..+|-+++..
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 33444556666789999999999999999999865
No 371
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=70 Score=42.49 Aligned_cols=132 Identities=18% Similarity=0.100 Sum_probs=71.7
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCC----HHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL------YHTGD----FNQATI 128 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly------~~lGd----yeeAle 128 (1060)
.+.-...-.-+.+|.+|+..|+..+|+.+|.+|+.-.- .. .++..+-.-. ...|+ -..|++
T Consensus 914 wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g----e~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lh 984 (1480)
T KOG4521|consen 914 WCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFG----EG-----NALRKLVYFLLPKRFSVADGKTPSEELTALH 984 (1480)
T ss_pred hhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccc----cH-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHH
Confidence 33334444556789999999999999999999975421 10 0111111000 01121 122445
Q ss_pred HHHHHHHHHHHh----------------cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHH
Q 001523 129 YQQKALDINERE----------------LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 192 (1060)
Q Consensus 129 ~yqKALeL~ek~----------------~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~ 192 (1060)
||.++++++++. .+.+.+..+..+.++=..+..+|.|-+|.+.+-+- ++....-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrd 1055 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHH
Confidence 555555554432 34556666666776666677777777665544321 12222344
Q ss_pred HHHHHHHHHHHCCCHH
Q 001523 193 TYINVAMMEEGLGNVH 208 (1060)
Q Consensus 193 a~~nLA~iy~~lGdyd 208 (1060)
++..|-.+++..|+++
T Consensus 1056 cLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHhccchH
Confidence 5566666666666654
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.47 E-value=6.5 Score=42.49 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 211 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAi 211 (1060)
+....+.+...+.||..|. ..+.++|+.+|.++|++... ++.....++..||.+|..+|++++|-
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3334456788888998776 67899999999999998643 32334677889999999999999884
No 373
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.23 E-value=2.3e+02 Score=37.69 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=63.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 001523 28 DGTSFFSFSLKWWSLFVSSFELFFINSLQQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTA 107 (1060)
Q Consensus 28 ea~~lfs~AL~~W~~~~~af~l~li~al~~i~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A 107 (1060)
-+.++|.+|+..++.+...|.. ...-.++.+..|..++.+..-..--+.|.+||..+++.. +.+...
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 552 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPG-----------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAP 552 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCC-----------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCc
Confidence 3567788888888886654431 111123455556555544333333356777777766653 334455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
--|...|.+|..+|+|++-++.|.-|++.+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 567788899999999999999999998875
No 374
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.57 E-value=88 Score=36.62 Aligned_cols=32 Identities=13% Similarity=-0.059 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLV 96 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~e 96 (1060)
...-++.|..++..++|.+....|..|-..++
T Consensus 58 il~~L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 58 LLWDLQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred HHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 33445578899999999988887776655543
No 375
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.55 E-value=83 Score=40.27 Aligned_cols=26 Identities=27% Similarity=0.040 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
+..-|.+|...|++.+|...|+.|+.
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~m 963 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALM 963 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888777776654
No 376
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.95 E-value=25 Score=36.86 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 183 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~ 183 (1060)
......+..+..+-...++.+.+...+... ..+ .|.....-..-|.++...|+|.+|+.+|+....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~AL-rvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDAL-RVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHH-HHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 345566777777778888999888877544 433 355677778889999999999999999998654
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 001523 184 GPSHPNTAATYINVAMMEEGLGNVH 208 (1060)
Q Consensus 184 g~d~p~~a~a~~nLA~iy~~lGdyd 208 (1060)
..+....+.-.++.|+..+|+..
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 23333344445888888888753
No 377
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.83 E-value=1.7e+02 Score=35.54 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=41.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 198 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 198 A~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
|..++.+|+|.++.-+-.-..+++ | ...+|..+|.++....+|.+|..+++.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 445778999999988877776665 3 356788899999999999999988764
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.73 E-value=52 Score=37.53 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
...++..++..+...|+++.+++.+++.+.+. +..-..|..|-..|...|+...|+..|++.-+....-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD--------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 35677889999999999999999999888754 4455677788889999999999999999988877666676
Q ss_pred CCHH
Q 001523 270 DDLR 273 (1060)
Q Consensus 270 dh~~ 273 (1060)
+-..
T Consensus 224 ~P~~ 227 (280)
T COG3629 224 DPAP 227 (280)
T ss_pred CccH
Confidence 6443
No 379
>PRK10941 hypothetical protein; Provisional
Probab=77.66 E-value=19 Score=40.77 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 227 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~ 227 (1060)
..+.+.+|-.+|...++++.|+.+.+..+.+ .++++ .-+...|.+|.++|.+..|..-++.-++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 5677889999999999999999999999986 33443 445568999999999999999999888876 5
Q ss_pred CcHHHHHHHHHH
Q 001523 228 DHIQTAASYHAI 239 (1060)
Q Consensus 228 dhp~~a~a~~nL 239 (1060)
+.+........+
T Consensus 247 ~dp~a~~ik~ql 258 (269)
T PRK10941 247 EDPISEMIRAQI 258 (269)
T ss_pred CchhHHHHHHHH
Confidence 555444443333
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.65 E-value=12 Score=31.95 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 001523 234 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 279 (1060)
Q Consensus 234 ~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~ 279 (1060)
.+++.||..+.++|+|++|..+.+.+|++ .|++........
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Confidence 36778999999999999999999999988 566665544433
No 381
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.31 E-value=26 Score=38.40 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHH
Q 001523 126 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 203 (1060)
Q Consensus 126 Ale~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~ 203 (1060)
|+.+|.+|+.+. |.....|+.||.++...|+.-.|+-+|-+++.. ..|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 788999999985 667889999999999999999999999999853 2343 5567788888777
No 382
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.24 E-value=43 Score=33.79 Aligned_cols=76 Identities=11% Similarity=-0.025 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp-------~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
+..+|......+++-.|+-+|++|+.+.++....... .......|||..++.+|+-+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999998877422111 123456799999999999999999999887766555
Q ss_pred cCC
Q 001523 267 LGP 269 (1060)
Q Consensus 267 lg~ 269 (1060)
...
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 443
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.01 E-value=57 Score=37.18 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 001523 105 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 184 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g 184 (1060)
....++..++..+...|+++.++..+++.+.+ +|..-..|..+-..|...|+...|+..|++.-....+..|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678899999999999999999999988875 4555677888899999999999999999999887666555
Q ss_pred CCCh
Q 001523 185 PSHP 188 (1060)
Q Consensus 185 ~d~p 188 (1060)
.+..
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 5443
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.74 E-value=2.2e+02 Score=36.98 Aligned_cols=152 Identities=11% Similarity=-0.046 Sum_probs=83.4
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL-YHTGDFNQATIYQQKALDINE 138 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly-~~lGdyeeAle~yqKALeL~e 138 (1060)
........+..+-.++...|++++-...-.++-+++ +..+.+..-|. ...++ ...++..++...|.+||.-+.
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~ekal~dy~ 181 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWL-KDELSMTQSEERKEVEELFEKALGDYN 181 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHH-HHHHhhccCcchhHHHHHHHHHhcccc
Confidence 333344455666777788888887555444444332 22233222222 12222 223677788888888876432
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001523 139 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 139 k~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekAL 218 (1060)
.. ....+.+......+..+...++|+.-...|.++|...--+.. .-......|.-+-..|...-..++-+.++...+
T Consensus 182 ~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 182 SV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred cc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 001112233333444456678899999999999986543332 223345566666666666555566666666665
Q ss_pred HH
Q 001523 219 KC 220 (1060)
Q Consensus 219 ei 220 (1060)
.+
T Consensus 259 ~~ 260 (881)
T KOG0128|consen 259 KQ 260 (881)
T ss_pred hc
Confidence 54
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.69 E-value=34 Score=41.38 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 148 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~ 148 (1060)
...+..+..+|-.+.|+.+.+.-- ..+.|| ...|+++.|.+..++. + .
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D~~----------------~rFeLA---l~lg~L~~A~~~a~~~----------~---~ 346 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTDPD----------------HRFELA---LQLGNLDIALEIAKEL----------D---D 346 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS-HH----------------HHHHHH---HHCT-HHHHHHHCCCC----------S---T
T ss_pred HHHHHHHHHCCCHHHHHhhcCChH----------------HHhHHH---HhcCCHHHHHHHHHhc----------C---c
Confidence 345666777887777776543322 223333 4678888777654321 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHH
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 209 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydE 209 (1060)
...|..||...+.+|+++-|+++|+++-. +..|..+|...|+.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHH
Confidence 34688999999999999999999988644 2345666677777543
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.41 E-value=18 Score=43.16 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
-++..|.+++..+|+|..|++.++..---...++..-.......++.+|.+|..+++|.+|++.|...|-...+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778899999999999999886532111112222233455678899999999999999999999988776554
No 387
>PRK10941 hypothetical protein; Provisional
Probab=75.01 E-value=19 Score=40.72 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
..+.+.+|=.+|...++++.|+.+.+..+.+. ++++. -+...|.+|.++|.+..|..-|+..++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD-----PEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 45678899999999999999999999999875 55553 34456999999999999999888887764 6
Q ss_pred CCHHHHHHHHHHHHHH
Q 001523 270 DDLRTQDAAAWLEYFE 285 (1060)
Q Consensus 270 dh~~t~~al~~La~l~ 285 (1060)
+++....+...+..+.
T Consensus 247 ~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 247 EDPISEMIRAQIHSIE 262 (269)
T ss_pred CchhHHHHHHHHHHHh
Confidence 7777666665554443
No 388
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=26 Score=43.42 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 160 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 160 ~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.++|+++.|..+..++-. ..-|..||.+....|++..|.++|.+|..+
T Consensus 648 l~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 456666666655444322 223556777778888888888888777654
No 389
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=72.99 E-value=26 Score=42.22 Aligned_cols=135 Identities=21% Similarity=0.112 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhc---CCCChhHHHHHHH-------HHHHHHHcCCHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALD-KGKLEDAVTYGTKALAKLVAVC---GPYHRMTAGAYSL-------LAVVLYHTGDFNQATIYQQKA 133 (1060)
Q Consensus 65 AraLlelA~~yl~-qGdyeEAi~~fekALel~ekil---g~d~p~~A~A~~~-------LA~ly~~lGdyeeAle~yqKA 133 (1060)
..++-.+|..|.. ..|.-.|+.++.++++...... .+..+......+. ...+-...++.+ .+-.++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHH
Confidence 4445556665553 4467889999999998865410 0111111111111 111222222322 233467
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH
Q 001523 134 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 202 (1060)
Q Consensus 134 LeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~ 202 (1060)
|-+.++++++.|++........|.+|...|+++..+++..-||.+.++.+.+-.+.++..+...+.++.
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 778889999999988777778899999999999999999999999999888888888888888887764
No 390
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.41 E-value=31 Score=35.86 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 60 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 60 ~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
|...-...+++....-+..++.+++..++.. +..+ .|....+...-|.++...|+|.+|+..++...+-
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--- 73 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--- 73 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc---
Confidence 4444455667777777778999998876654 3332 3667778888999999999999999999887542
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCCH
Q 001523 140 ELGLDHPDTMKSYGDLAVFYYRLQHT 165 (1060)
Q Consensus 140 ~~g~d~p~~a~ay~nLA~lY~~lGdy 165 (1060)
.+....+...++.|++.+||.
T Consensus 74 -----~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -----AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -----CCCchHHHHHHHHHHHhcCCh
Confidence 222344555678888888775
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.17 E-value=27 Score=32.92 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 187 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 187 ~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
+|....+.+.||..+...|++++|++.+..++...... +-+.|.+.+-..+++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-----------------------~~~~ar~~ll~~f~~---- 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-----------------------EDDAARKRLLDIFEL---- 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-----------------------CCCHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------------cccHHHHHHHHHHHH----
Confidence 56667889999999999999999999888776643110 223444444444443
Q ss_pred cCCCCHHHHHHHHHHHH
Q 001523 267 LGPDDLRTQDAAAWLEY 283 (1060)
Q Consensus 267 lg~dh~~t~~al~~La~ 283 (1060)
+|..|+.+...+..|..
T Consensus 71 lg~~~plv~~~RRkL~~ 87 (90)
T PF14561_consen 71 LGPGDPLVSEYRRKLAS 87 (90)
T ss_dssp H-TT-HHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHH
Confidence 37777777766666543
No 392
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.56 E-value=62 Score=40.01 Aligned_cols=92 Identities=15% Similarity=-0.011 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH
Q 001523 125 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR--LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 202 (1060)
Q Consensus 125 eAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~--lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~ 202 (1060)
+-..+-++.|.++-... .-.....++.+||.+--- ...-..++++|.+|+...+..++..| ..-|..+|-.|+
T Consensus 255 e~~~lqq~lLw~lyd~g--hl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~y 329 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMG--HLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYY 329 (618)
T ss_dssp HHHHHHHHHHHHHHHTT--TTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC--chhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHH
Confidence 33444455555543321 222356778888877653 23356789999999999998886433 455677999999
Q ss_pred HCCCHHHHHHHHHHHHHHH
Q 001523 203 GLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 203 ~lGdydEAie~yekALei~ 221 (1060)
+.++|.+|+.++-+|-...
T Consensus 330 R~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 330 RHKRYREALRSWAEAADVI 348 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998886654
No 393
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.97 E-value=53 Score=40.57 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 105 MTAGAYSLLAVVLYHT--GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~l--GdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
....++.+||.+.-.. ..-..++.+|.+|+...+..++..| ..-|..+|-.|++.++|.+|+.++-+|-..+...
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456777777766542 3356789999999999998887665 4457889999999999999999888876654321
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 183 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 183 ~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei 224 (1060)
+-..+-.+.|++.++|+.++
T Consensus 352 ----------------------nY~reDeEiYKEfleIAneL 371 (618)
T PF05053_consen 352 ----------------------NYSREDEEIYKEFLEIANEL 371 (618)
T ss_dssp ----------------------B--GGGHHHHHHHHHHHHTH
T ss_pred ----------------------ccCccHHHHHHHHHHHHHHH
Confidence 01234567788888877443
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.61 E-value=26 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 193 TYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 193 a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.++.||..++++|+|++|..+.+.+|++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999975
No 395
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=70.44 E-value=1.2e+02 Score=35.34 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH
Q 001523 106 TAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINE 138 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGd---------yeeAle~yqKALeL~e 138 (1060)
.+.+++++|.+|..++. +.+|..+|++|--+++
T Consensus 118 ka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~ 159 (346)
T cd09240 118 KVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFN 159 (346)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Confidence 45677888887766542 5778888988876654
No 396
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.11 E-value=93 Score=37.02 Aligned_cols=61 Identities=13% Similarity=-0.000 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH--HHHHHcCCHHHHHHHHH
Q 001523 68 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA--VVLYHTGDFNQATIYQQ 131 (1060)
Q Consensus 68 LlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA--~ly~~lGdyeeAle~yq 131 (1060)
...+++.++..++|..|..+|.+++... +..........+..|+ ..++..-++++|.+++.
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3336778999999999999999998552 1122233344555554 45566788999999998
No 397
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.97 E-value=21 Score=33.57 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=27.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
+|....+.+.+|..+...|++++|++.+..++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556788999999999999999999998877764
No 398
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=69.93 E-value=6.4 Score=47.04 Aligned_cols=135 Identities=24% Similarity=0.210 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHcCCHHHHH--------HH
Q 001523 105 MTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINEREL----GLDHPDTMKSYGDLAVFYYRLQHTELAL--------KY 171 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~l-GdyeeAle~yqKALeL~ek~~----g~d~p~~a~ay~nLA~lY~~lGdyeeAl--------ey 171 (1060)
....++-.||..|... .|.-.|+.+++++++....-. ....... .++.-|.+.-+..+-+ +.
T Consensus 243 ~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p-----~~ay~~~re~~~~~elE~lv~D~d~~ 317 (615)
T KOG0508|consen 243 SRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEP-----VLAYGYGREVNNREELEELVEDPDEM 317 (615)
T ss_pred hHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCc-----hhhhhhhhhcCCHHHHHHHhcChHHH
Confidence 3456777777777543 357789999999988765410 1111111 1222222222221111 22
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 001523 172 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 244 (1060)
Q Consensus 172 yekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~ 244 (1060)
-.++|-+.++++|+.|+++.......|.+|..+|+++..+++++-||.+.++.+.+-.+.++..+...+.++.
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 3466777788899999988776667899999999999999999999999999988888888888887777664
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.91 E-value=43 Score=36.77 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 001523 84 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 161 (1060)
Q Consensus 84 Ai~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~ 161 (1060)
|+.+|.+|+.+. |.....|+.||.++...|+.-.|+-+|-+++.. ..| ...+..||..++..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHH
Confidence 788999999884 778899999999999999999999999999854 223 35677788887776
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.85 E-value=10 Score=43.33 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 62 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
..+|...+..|......|+.++|..+|..|+++ .|....++..+|.......+.-+|-.+|-+||.+
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 345777777888889999999999999999987 3666778999999999999999999999999887
No 401
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=68.96 E-value=18 Score=44.02 Aligned_cols=95 Identities=18% Similarity=0.044 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINERELG 142 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l---GdyeeAle~yqKALeL~ek~~g 142 (1060)
+.++..|.-.+..+....|+..|.+++.. .+.....|.+.|.+++.. |+.-.|+.-...|+++
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------ 440 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------ 440 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------
Confidence 33444444445555667778888877754 356677788888888775 4555666666666654
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001523 143 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 176 (1060)
Q Consensus 143 ~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekAL 176 (1060)
.+-...+++.|+.++..++++.+|+.+...+.
T Consensus 441 --n~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 441 --NPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 35678899999999999999999998765443
No 402
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.19 E-value=2.5e+02 Score=33.09 Aligned_cols=29 Identities=7% Similarity=-0.137 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 153 GDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 153 ~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
.+-|.+++..++|.+....+..+-..++.
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 45588888888988888777666555443
No 403
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.91 E-value=7.2 Score=27.99 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLH 215 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~ye 215 (1060)
.++++||.++..+|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889999999999999999876
No 404
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.99 E-value=6.4 Score=28.25 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQK 132 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqK 132 (1060)
.++..||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999998763
No 405
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.18 E-value=38 Score=34.75 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 62 SADGRQLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 136 (1060)
Q Consensus 62 s~dAraLlelA~~yl~qGdy---eEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL 136 (1060)
.......|.+|+++....+- .+.+.+++..++. ......-...+.||.-++++++|++|+.|....|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55566788888888766544 4555555555531 233345678899999999999999999999988875
No 406
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.76 E-value=1.3e+02 Score=39.03 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 112 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 112 ~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee 181 (1060)
.+-.+|...|+|++|+++.+..-+ ..-.++...|..|+..++|..|.++|-+.+.-+++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 445688899999998887765421 13346788899999999999999999887665543
No 407
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=64.59 E-value=2.3e+02 Score=33.88 Aligned_cols=61 Identities=10% Similarity=-0.205 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHHHhcCChhHHHHHHHH
Q 001523 195 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA--IAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 195 ~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~n--LA~ly~~lGdyeEAie~lqk 258 (1060)
..++..++..++|..|...|.+++... ...+.......+.. .|..++..-++++|..++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345667889999999999999988652 11111222333444 44555789999999999874
No 408
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=64.58 E-value=2.3e+02 Score=33.32 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
.+.+++..|......+++-+++.+++.|+..+.+
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455666777777777888888888887775543
No 409
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.42 E-value=3.9e+02 Score=33.88 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001523 72 SKTALDKGKLEDAVTYGTK 90 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fek 90 (1060)
..+++-.|+|+.|+.++.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 4667788999999998877
No 410
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=64.31 E-value=3.5e+02 Score=33.74 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLG----PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALei~eeilG----~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
.++++.-+...|.-.++++++.-+....+.... ..-++....|..+..+|...|.+.+|..+.++++.-..+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 467888888999999999999887666554321 123566788889999999999999999999998875544
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=63.64 E-value=46 Score=35.82 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=86.5
Q ss_pred CcHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----C--CHHHHHH
Q 001523 61 SSADGRQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----G--DFNQATI 128 (1060)
Q Consensus 61 ~s~dAraLlelA~~yl-----~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~l-----G--dyeeAle 128 (1060)
+...+...|..|..++ ..+++..|+++|..+.+ .....++.++|.+++.- + +..+|++
T Consensus 64 en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----------~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~ 133 (248)
T KOG4014|consen 64 ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----------ANIPQACRYLGLLHWNGEKDRKADPDSEKAER 133 (248)
T ss_pred ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----------cCCHHHHhhhhhhhccCcCCccCCCCcHHHHH
Confidence 3444556666665443 34567788888877764 24456888888888753 2 3778999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH------------------------cCCHHHHHHHHHHHHHHHHHhCC
Q 001523 129 YQQKALDINERELGLDHPDTMKSYGDLAVFYYR------------------------LQHTELALKYVKRALYLLHLTCG 184 (1060)
Q Consensus 129 ~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~------------------------lGdyeeAleyyekALei~ee~~g 184 (1060)
|+.+|-++- ...+.++|...|+. ..+.++|.++..+|.++
T Consensus 134 y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel------ 197 (248)
T KOG4014|consen 134 YMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL------ 197 (248)
T ss_pred HHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc------
Confidence 998887651 12334444444433 35667777777776664
Q ss_pred CCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHh
Q 001523 185 PSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 185 ~d~p~~a~a~~nLA~iy~~l----GdydEAie~yekALei~eei 224 (1060)
++ ..+.-|+.++|..- .+-++|..|-.+|.++.++.
T Consensus 198 -~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 198 -DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred -CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33 45667788887542 46789999999999987665
No 412
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.62 E-value=1.1e+02 Score=34.93 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-----CChhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 109 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-----DHPDTMKSYGDLA-VFYYRLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 109 A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~-----d~p~~a~ay~nLA-~lY~~lGdyeeAleyyekALei~ee~ 182 (1060)
.+-.-|..+.-.-||..|++.++++++.+...... ...+.-..++-+| .++.++++|.+++.+..+-.+.-++.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 33444566666789999999999999887321111 1122333444454 56778999999988776655432221
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 001523 183 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 257 (1060)
Q Consensus 183 ~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lq 257 (1060)
.+ .++-.--.+|.+.+.+...++.-..-|..-....-++...++. ..|-.++.=+|.+++|+++..
T Consensus 117 ----Pp---kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaE--LyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 ----PP---KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAE--LYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ----CH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHH--HHHHHHHhccccHHHHHHHHh
Confidence 22 2332234457788998888777666555321110011111222 235556667899999988764
No 413
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=63.13 E-value=2.4e+02 Score=33.25 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 264 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~r 264 (1060)
.+.+++..|..+...+++-+++.+|+.|+..++
T Consensus 251 ~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 251 ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777788888888888777543
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.80 E-value=30 Score=41.76 Aligned_cols=133 Identities=18% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
++..-+.....+..|+.-.|-+-...+|... +.........+.++.++|+|+.|...+.-+-.+. +..
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~ 356 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTT 356 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCC
Confidence 3334444455677899988888777777543 2233344567888999999999998876655443 211
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+ .+...+-..++.+|++++|....+..|.- + ...++.. ..-|.....+|-+++|.-++++.+.+.
T Consensus 357 ~----~~~~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~---~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 357 D----STLRCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVL---TVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred c----hHHHHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhe---eeecccHHHHhHHHHHHHHHHHHhccC
Confidence 1 22333445567788999998877665541 1 1223322 222334456677888888888877664
No 415
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=62.42 E-value=27 Score=39.16 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.8
Q ss_pred cCCCCCCCCcccCCCCcccccCCC
Q 001523 772 TLPPGPGAVTAVAPWPVNMTLHPR 795 (1060)
Q Consensus 772 ~~~~~~~~~~~~~~~p~n~~~~~~ 795 (1060)
+-| |+..+||+.||| +|+.|||
T Consensus 203 ~RP-G~~~~PgmtprP-G~~~~Pg 224 (279)
T PF07271_consen 203 QRP-GFTPHPGMTPRP-GMTPHPG 224 (279)
T ss_pred CCC-CCCCCCCCCCCC-CCCCCCC
Confidence 444 899999999999 7999988
No 416
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.34 E-value=19 Score=42.05 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 172 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyy 172 (1060)
+.-+...|+-.+.+++|++|...|..|..++..++|..+..+..+++.+|..++.+++++.+.-.+
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445567788899999999999999999999999999999999999999999999999888776544
No 417
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=62.33 E-value=36 Score=39.31 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCCccCCC
Q 001523 801 PTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPP 833 (1060)
Q Consensus 801 ~~~~p~~~sp~~~~~~~~~~~~~~~~~~~~y~p 833 (1060)
|.-.||-.|||-+-|+|-..|.-.|==||.+||
T Consensus 290 ppRP~m~l~phl~gppPga~pPaph~NpaffpP 322 (498)
T KOG4849|consen 290 PPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPP 322 (498)
T ss_pred CCCcccccCcccCCCCCCCCCCCcccCcccCCC
Confidence 555677778887776655444444445666766
No 418
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=62.02 E-value=92 Score=33.05 Aligned_cols=105 Identities=14% Similarity=0.015 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 146 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p 146 (1060)
+.+++-..-...|.|.+|.+++.+.++. ..+.+...+|..+++|.+...+-.--++--.+..+.+.-...+..|
T Consensus 95 A~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kP 168 (220)
T PF10858_consen 95 AALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKP 168 (220)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCc
Confidence 4445555667789999999999999876 3456778889999998887755433333333333333222334556
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 147 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 147 ~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
..+.+-...|..-...|.-.+|+++++..+.
T Consensus 169 FWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 169 FWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 6666666667777788999999999988776
No 419
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=61.57 E-value=2.2e+02 Score=32.93 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 265 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rk 265 (1060)
.+.+++.+|..+...+++-+|+.+++.|+..++.
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777777665443
No 420
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.48 E-value=74 Score=33.15 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 001523 106 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 185 (1060)
Q Consensus 106 ~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~ 185 (1060)
....+..+..+-...++.+++...+.. +..+ .|.....-..-|.++...|+|.+|+..++...+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 344555555555568888888877654 4433 3555666777899999999999999999887652
Q ss_pred CChhHHHHHHHHHHHHHHCCCH
Q 001523 186 SHPNTAATYINVAMMEEGLGNV 207 (1060)
Q Consensus 186 d~p~~a~a~~nLA~iy~~lGdy 207 (1060)
.+......-.++.|+..+|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 122233334478888888874
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.68 E-value=57 Score=37.47 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
.+..|...|.+.+|+++.++++.+ ++..-..+..|-.+|..+|+--.|...|.+.-+.+++.+|-+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 467778888888888888888755 456666777777888888888888888887777766655544
No 422
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.59 E-value=78 Score=32.60 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 190 TAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdy---dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
...+.+++|.++....+. .+.+.+++..++ . ......-.+.+.||..+.++++|++|+.|....++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456788899988876554 455556655554 1 122234567788999999999999999999988876
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.05 E-value=3.1e+02 Score=30.75 Aligned_cols=150 Identities=12% Similarity=0.013 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCC
Q 001523 66 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGLD 144 (1060)
Q Consensus 66 raLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdye-eAle~yqKALeL~ek~~g~d 144 (1060)
..++.=|..+++.|++..|.++..-.++.+.+... +........|+.++.....-+ +-..+..+|+... +. +..
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~---~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~ 85 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSED---PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSY 85 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCC
Confidence 34555678888999999999988888887776421 222234467777777765433 4566777777776 32 333
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhCCCCChhHHHHHH-HHHHHHHHCCCHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALY--------LLHLTCGPSHPNTAATYI-NVAMMEEGLGNVHVALRYLH 215 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe--------i~ee~~g~d~p~~a~a~~-nLA~iy~~lGdydEAie~ye 215 (1060)
.......+..+|..|++.+++.+|..+|-.+-. +.........+.....+. +.-..|...++...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333567789999999999999999998843211 111000001111223333 23334777899999998887
Q ss_pred HHHHH
Q 001523 216 KALKC 220 (1060)
Q Consensus 216 kALei 220 (1060)
.-++.
T Consensus 166 ~f~~~ 170 (260)
T PF04190_consen 166 TFTSK 170 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 424
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.76 E-value=93 Score=41.07 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=20.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcCCCc
Q 001523 800 LPTVNPMCSSPHQPYPSPPSTPNMMQPLPF 829 (1060)
Q Consensus 800 ~~~~~p~~~sp~~~~~~~~~~~~~~~~~~~ 829 (1060)
++..-|.|.+||-+.+.|+..|-|.+|+++
T Consensus 724 ~~~~qP~~~~p~~~~~~~~~~~~~~~P~~~ 753 (1049)
T KOG0307|consen 724 IGVTQPQCYSPTTQASTPGNQPPMAPPYPN 753 (1049)
T ss_pred CCcCCCccccCCCCCCCCCCCCCcCCCCcC
Confidence 555667778787666556666667777775
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.51 E-value=21 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALA 93 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALe 93 (1060)
+.+|+.|...|+++.|+..+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999984
No 426
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.07 E-value=73 Score=36.64 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
...++..+..|...|.+.+|+++.++++.+ ++..-..+..|-.+|..+|+--.|...|++.-+..+.-+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 344566678889999999999999999985 555667778888899999999999999988777776666644
Q ss_pred c
Q 001523 229 H 229 (1060)
Q Consensus 229 h 229 (1060)
-
T Consensus 351 v 351 (361)
T COG3947 351 V 351 (361)
T ss_pred c
Confidence 3
No 427
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=56.65 E-value=21 Score=41.00 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 195 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 195 ~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.+.|.-....|+.++|..+|+.|+++. ++++ .++..+|.....-++.-+|-++|-+||.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlala-----P~~p---~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALA-----PTNP---QILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcC-----CCCH---HHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 344555667899999999999999986 4554 56777898888889999999999999887
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.97 E-value=93 Score=31.06 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 001523 163 QHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 241 (1060)
Q Consensus 163 GdyeeAleyyekALei~ee~-~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ 241 (1060)
+.-..-...+++++..+... .-.+++....++...|... ..+.+.|+....- ..|.. .+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~---~IG~~---~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSK---GIGTK---LALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHH---TTSTT---BHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHc---CccHH---HHHHHHHHHH
Confidence 44555667888888876442 1123455555555555432 2778888765442 23433 4567778899
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 001523 242 ALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 242 ly~~lGdyeEAie~lqkAL 260 (1060)
.+...|++.+|...|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 429
>PRK14707 hypothetical protein; Provisional
Probab=55.91 E-value=3.5e+02 Score=38.86 Aligned_cols=194 Identities=11% Similarity=-0.051 Sum_probs=115.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 148 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~--A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~ 148 (1060)
+++++....++-++-.+-.-++.+..++ ...+.... --..++.++..+.++.+.-.+-.-+..+...+........
T Consensus 1005 vAN~LNALSKWPd~~~Cr~AA~~LA~rL--a~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~ 1082 (2710)
T PRK14707 1005 MANALNALSKWLQMPVCAATVEALAARL--SNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRN 1082 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHh--ccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHH
Confidence 4566666667766555555566666554 22333332 2346777888888887766666666666554432212112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 228 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~d 228 (1060)
+..-..++.++..+-+|-+.-.+-+-++.+...+.....+........++.++..+.+|-....+=.-+..+..++....
T Consensus 1083 Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~ 1162 (2710)
T PRK14707 1083 ALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAP 1162 (2710)
T ss_pred hhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccch
Confidence 23335677888888888887777778888877766554554445556777777777777766666666666665553333
Q ss_pred cHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 229 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 229 hp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
....+..-..+|..+-.+-++.+...+-+-++.+....
T Consensus 1163 ~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rl 1200 (2710)
T PRK14707 1163 GLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERA 1200 (2710)
T ss_pred hhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhh
Confidence 22223333456666666666666555555555555444
No 430
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=55.71 E-value=2.8e+02 Score=29.56 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 189 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~ 189 (1060)
+..+-..-...|.|.+|.+++.+.++.- ...+...+|..+++|.+...+-..-+.--++..+.+.-...+..|.
T Consensus 96 ~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPF 169 (220)
T PF10858_consen 96 ALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPF 169 (220)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCch
Confidence 3334444556789999999999988863 3456788899999988877553322222333333333333445666
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 190 TAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 190 ~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.+.+-...|..-...|.-.+|+++++..+.-
T Consensus 170 WatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 170 WATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6666666677777889999999999887763
No 431
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=55.49 E-value=51 Score=30.33 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
.|..+...|..+-..|++.+|+.+|+++++++.+..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999999887664
No 432
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.12 E-value=1.7e+02 Score=33.62 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHH
Q 001523 65 GRQLLE-SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-----MTAGAYSLLA-VVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 65 AraLle-lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p-----~~A~A~~~LA-~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
+-.+++ -|..+.-..||..|+..++++++..........+ ..-..+..+| .++..++++.+++.+..+-.+.-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 334444 4566677889999999999999887332111111 1112222333 46778899988887765544332
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001523 138 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLH 215 (1060)
Q Consensus 138 ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~-~a~a~~nLA~iy~~lGdydEAie~ye 215 (1060)
++ -| ..++-..-.+|.+.++....++....-|.--... .-+. ..-+-..|-.++.=+|.+.+|.++..
T Consensus 114 Ek-----lP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq---~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EK-----LP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ---SLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred cc-----CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC---CchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22 11 3344445567889999998888776655521111 1111 11122234555666899999999884
No 433
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.97 E-value=71 Score=39.80 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 118 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 118 ~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.++|+++.|.++..++-. ..-|..||.+....+++..|.+++.+|..+
T Consensus 648 l~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 456777777776655432 223678999999999999999999998764
No 434
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.03 E-value=32 Score=43.64 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCccccc
Q 001523 856 HFSWQCNGNSNVPEFIPGPFLPGYHPMEF 884 (1060)
Q Consensus 856 ~f~~~~~~~~~~~~f~p~~~~~~~~~~~~ 884 (1060)
.|.|-- .+| .|.-=-.+|.+|.-=-|
T Consensus 628 r~nW~k-I~p--~d~s~~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 628 RFNWSK-IVP--RDLSENCFWVKVNEDKL 653 (1102)
T ss_pred cCCccc-cCc--cccCccceeeecchhhc
Confidence 356853 222 23333578999975333
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.53 E-value=1e+02 Score=30.78 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 001523 121 GDFNQATIYQQKALDINERE-LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 199 (1060)
Q Consensus 121 GdyeeAle~yqKALeL~ek~-~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~ 199 (1060)
+.-..-...+++++..+... .-.+++....++..+|... ..+.+.|..... +..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~---~~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYS---KGIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHH---HTTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHH---cCcc---HHHHHHHHHHHH
Confidence 44555567788888777432 1234455566665555432 277777776544 2223 234677888999
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q 001523 200 MEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 200 iy~~lGdydEAie~yekAL 218 (1060)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 436
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=2.2e+02 Score=35.69 Aligned_cols=111 Identities=17% Similarity=0.081 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHH
Q 001523 100 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALYL 178 (1060)
Q Consensus 100 g~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyek-ALei 178 (1060)
++.++...-+.. +...+...++...+...+..++.. .+..+.++.+||......|....++..+.. +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455666655555 888888889988888777777764 355778899999888887776666555444 4332
Q ss_pred HHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 179 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 179 ~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.... . ........++.++..+..+|+..++..+++++.++.
T Consensus 132 ~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 132 SPDN-A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred Ccch-H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 1100 0 000111223347999999999999999999888876
No 437
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.84 E-value=2e+02 Score=37.62 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 139 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek 139 (1060)
.-+.|++.|+|+.|+++.+..-+ ..-.++..-|..|++.++|..|.++|-+.+.-+++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 36789999999999887765421 22346778889999999999999999888766554
No 438
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=52.46 E-value=46 Score=40.81 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 001523 121 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINV 197 (1060)
Q Consensus 121 GdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lG---dyeeAleyyekALei~ee~~g~d~p~~a~a~~nL 197 (1060)
+....|+..|.+++... +.....|.+.|.++++.+ +.-.|+.-+..|+.+ ++-...+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 45566777777777653 445667778888887654 334444444455442 56678899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q 001523 198 AMMEEGLGNVHVALRYLHKAL 218 (1060)
Q Consensus 198 A~iy~~lGdydEAie~yekAL 218 (1060)
+.++..++++.+|+++...+.
T Consensus 452 a~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHh
Confidence 999999999999998876543
No 439
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=52.31 E-value=2.4e+02 Score=33.31 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+.+++..|..+...+++-+|+..++.|.+.+
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 45566666766677777777777777776654
No 440
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=52.26 E-value=4.5e+02 Score=30.79 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
.+.+++.+|......+++-+|+.+++.|...+++..
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 355667778888888999999999999998766553
No 441
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.07 E-value=90 Score=28.74 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 97 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ek 97 (1060)
.|..+...|.-+=..|+|++|+.+|.++++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4667778888899999999999999999998765
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.59 E-value=1.1e+02 Score=40.05 Aligned_cols=188 Identities=15% Similarity=0.066 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH----h
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDINER----E 140 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdy--eeAle~yqKALeL~ek----~ 140 (1060)
-+..++..|...|++++|++++.+..+-.. ..+......+-.+-..+..++.- +-..+|-.-.+.-... +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 355578888899999999999888775321 01122223333333333333333 3344444333332111 0
Q ss_pred cCCCChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH---HHCCCHHHHHHH--H
Q 001523 141 LGLDHPDTMKSY-GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME---EGLGNVHVALRY--L 214 (1060)
Q Consensus 141 ~g~d~p~~a~ay-~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy---~~lGdydEAie~--y 214 (1060)
+..+....+... ...-.-|......+-++.|++.++...+.....-|...+..| +..+. ...++-++|.+. .
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly--~e~v~~~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY--LEKVLEQASTDGKGEEAPETTVR 659 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH--HHHHhhccCchhccccchhhhHH
Confidence 111111111111 122233456677888899999988754331110111112222 12222 112333455555 3
Q ss_pred HHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 215 HKALKCNQRLLGPDHI-------QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 215 ekALei~eeilG~dhp-------~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
++.+...+ .....++ .....|...|.++.++|+.++|+..|-..|.
T Consensus 660 ekl~~~l~-~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 660 EKLLDFLE-SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHhh-hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33333322 2111111 1245667788888999999999988766554
No 443
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=51.26 E-value=23 Score=41.36 Aligned_cols=104 Identities=15% Similarity=0.024 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELGL------D-----HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~------d-----~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
....|...+..++|+.|..-|.+++......... + ......++.+++.+-...+.+..|+.....++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3456777888999999999999998876531100 1 112345677889999999999999888777666
Q ss_pred HHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 179 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 179 ~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
.......+++..+..|..+.++++|++.++.+....
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 345567789999999999999999999999987654
No 444
>PRK14707 hypothetical protein; Provisional
Probab=51.16 E-value=1.7e+02 Score=41.70 Aligned_cols=195 Identities=13% Similarity=-0.022 Sum_probs=118.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001523 71 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 148 (1060)
Q Consensus 71 lA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~--A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~ 148 (1060)
+++++-...++-++-.+-.-++.+..++. ..+.... .-..+++++..++++.+...+-.-+..+...+........
T Consensus 921 VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~ 998 (2710)
T PRK14707 921 VATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRN 998 (2710)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHh
Confidence 45566666666665554444444554442 2233333 3346788888888888877777766666655422111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA--TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 226 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~--a~~nLA~iy~~lGdydEAie~yekALei~eeilG 226 (1060)
...-..++.++..+.+|-++-.+-.-++.+...+.. .+.... .-..++.++..+.+|.+.-.+-.-+..+...+..
T Consensus 999 al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~ 1076 (2710)
T PRK14707 999 ALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSD 1076 (2710)
T ss_pred hcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhc
Confidence 222346778888888887766666666666665432 233322 2356888899999998888887777777765533
Q ss_pred CCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCC
Q 001523 227 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 269 (1060)
Q Consensus 227 ~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~ 269 (1060)
......+..-..++.++..+-++.+.-.+-+.++.+...+...
T Consensus 1077 d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~ 1119 (2710)
T PRK14707 1077 DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDD 1119 (2710)
T ss_pred cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 2222223334567777777778877777777777777666443
No 445
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=51.06 E-value=87 Score=28.78 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 63 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 63 ~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
..|..+...|..+-..|+|++|+.+|.++++.+...+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3466778888899999999999999999999887653
No 446
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=50.60 E-value=3.2e+02 Score=32.05 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001523 105 MTAGAYSLLAVVLYHTG---------DFNQATIYQQKALDINE 138 (1060)
Q Consensus 105 ~~A~A~~~LA~ly~~lG---------dyeeAle~yqKALeL~e 138 (1060)
+.+.+++++|.+|...+ .+..|..+|++|--+++
T Consensus 105 Eka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~ 147 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQ 147 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 45667888888886653 36778888888877664
No 447
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.74 E-value=22 Score=39.46 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001523 116 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 178 (1060)
Q Consensus 116 ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei 178 (1060)
.....++.+.|.+.|.+++.+. |+.+..+..+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4456789999999999999984 667888999999999999999999999999986
No 448
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.54 E-value=2.4e+02 Score=32.41 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCHHHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001523 196 NVAMMEEGLGNVHVAL-RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 258 (1060)
Q Consensus 196 nLA~iy~~lGdydEAi-e~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqk 258 (1060)
+|+.+....+.-+..+ .+.+.+++-..+. +.........+..||..++.-++..+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 4444444444433333 3444455443332 222222345566788888888888888888754
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.18 E-value=5.1e+02 Score=30.60 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=68.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 001523 116 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 195 (1060)
Q Consensus 116 ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~ 195 (1060)
+....++.++|+.++++..+-......+ .....+...+|.++...|+..++.+.+...-.......+- .+..-..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence 4445679999999999998877654322 2466777889999999999999999999988877665432 233444555
Q ss_pred HHHHHH-HHCCCHHHHHHHHHHHHH
Q 001523 196 NVAMME-EGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 196 nLA~iy-~~lGdydEAie~yekALe 219 (1060)
.++.-| ...|++..+ |+.+|.
T Consensus 161 ~lssqYyk~~~d~a~y---Yr~~L~ 182 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY---YRHALL 182 (380)
T ss_pred HHHHHHHHHHHhHHHH---HHHHHH
Confidence 665554 456666544 444444
No 450
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=49.15 E-value=31 Score=40.30 Aligned_cols=103 Identities=16% Similarity=0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP-----------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 220 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g~-----------d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei 220 (1060)
.-+.+...+..++|+.|..-|.+++......-.. ........+.+++.+-...+.+..|+..-..+++
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 3456777888999999999999988876521100 0112235567788899999999999888777666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 221 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 221 ~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.......+++..+..+..+.++++|++.++.+.+.
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 22445678889999999999999999999988765
No 451
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=48.89 E-value=4.8e+02 Score=30.16 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------CCCh-
Q 001523 76 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--------LDHP- 146 (1060)
Q Consensus 76 l~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g--------~d~p- 146 (1060)
+.++++.+.++.+++.+.. .+.-.+..+..+.++..+| ++.+....+..+..+-..+. ...|
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~--------~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPF 180 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSL--------APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPF 180 (301)
T ss_pred HhCCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCC
Confidence 3667777777777666643 4777888999999999999 56777666666665433211 0000
Q ss_pred --hHHHHH----------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 001523 147 --DTMKSY----------------------------GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 196 (1060)
Q Consensus 147 --~~a~ay----------------------------~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~n 196 (1060)
.....+ ..-+..+...+..+.|+..++..+.. ...........+.
T Consensus 181 ad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~-----~~s~R~rf~~rL~ 255 (301)
T TIGR03362 181 ADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQ-----AREPRERFHWRLL 255 (301)
T ss_pred CCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-----CCChHHHHHHHHH
Confidence 000111 11133344555555565555543331 1233445666778
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 001523 197 VAMMEEGLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 197 LA~iy~~lGdydEAie~yekALei~eei 224 (1060)
++.++...|+++-|..+|.+..+..+..
T Consensus 256 ~A~l~~~~g~~~lA~~ll~~L~~~~~~~ 283 (301)
T TIGR03362 256 LARLLEQAGKAELAQQLYAALDQQIQQL 283 (301)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999988876543
No 452
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=48.70 E-value=7.5e+02 Score=32.38 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=12.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 001523 160 YRLQHTELALKYVKRALYLLH 180 (1060)
Q Consensus 160 ~~lGdyeeAleyyekALei~e 180 (1060)
..++.|+.|+.++.+.+...+
T Consensus 875 ~yl~~ye~ALghl~E~~n~~~ 895 (1243)
T COG5290 875 NYLSIYESALGHLNEDLNVIR 895 (1243)
T ss_pred hhHHHHHHHHHhhHhHHHHHH
Confidence 345667777777766654433
No 453
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=48.64 E-value=3.1e+02 Score=32.14 Aligned_cols=34 Identities=3% Similarity=-0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Q 001523 315 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 348 (1060)
Q Consensus 315 selL~~Lg~~y~~qGqyeEAl~~YeqALkL~~ki 348 (1060)
+.++++.|..+...++|-+|+.+++.|+......
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a 288 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKTA 288 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 4456677888888899999999999998866544
No 454
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.34 E-value=27 Score=28.80 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 001523 194 YINVAMMEEGLGNVHVALRYLHKALK 219 (1060)
Q Consensus 194 ~~nLA~iy~~lGdydEAie~yekALe 219 (1060)
.++||.+|..+|+++.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999885
No 455
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.01 E-value=1.1e+02 Score=27.76 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
.+..++..|...-..|+|++|+.+|.++++.+...+
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 356677788888899999999999999999886653
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.84 E-value=1.9e+02 Score=37.98 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH----
Q 001523 108 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHL---- 181 (1060)
Q Consensus 108 ~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdy--eeAleyyekALei~ee---- 181 (1060)
.-|..|+.+|...|++++|++.+++...-... ........+-.+-..+..++.- +-..+|..-.+.-...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 35678899999999999999999888763310 0111222233333444444443 4455554444332111
Q ss_pred hCCCCChhHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 182 TCGPSHPNTAATY-INVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 182 ~~g~d~p~~a~a~-~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
.+-.+....+... ...-.-|......+-++.|++.++...+
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR 622 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc
Confidence 0000011011111 1111224566777888889988887653
No 457
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.62 E-value=9e+02 Score=32.99 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH
Q 001523 200 MEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 200 iy~~lGdydEAie~yekALei~ 221 (1060)
++.-.|+...|..+..+|.+..
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHHH
Confidence 3444556666665555554443
No 458
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.52 E-value=1.8e+02 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 236 YHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 236 ~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
+...|.-+-..|+|++|+.+|+.+++.+...
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4445666668899999999999999999773
No 459
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.58 E-value=21 Score=39.51 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 001523 199 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 262 (1060)
Q Consensus 199 ~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI 262 (1060)
.+....++.+.|.++|.+++++. +..+..++.+|....+.|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 45567889999999999999986 556778999999999999999999999999886
No 460
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.27 E-value=6.9e+02 Score=31.22 Aligned_cols=231 Identities=6% Similarity=-0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 001523 84 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT-IYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 162 (1060)
Q Consensus 84 Ai~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAl-e~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~l 162 (1060)
..+-|.+.-++.... ......--.+|.|-.++.+....+ .+|-..+-.+.+..-.|. ++..+-.++...
T Consensus 10 s~~k~keld~~i~~~-----~~~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~-----~l~~~~~~f~~n 79 (711)
T COG1747 10 SAEKFKELDRIIAEA-----KRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDS-----CLVTLLTIFGDN 79 (711)
T ss_pred hHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccch-----HHHHHHHHhccc
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001523 163 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 242 (1060)
Q Consensus 163 GdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~l 242 (1060)
..+.--...+.+.+.+.+. -.+|+.++.+|... .-++=...+++.++++ ......-..|+..
T Consensus 80 ~k~~~veh~c~~~l~~~e~---------kmal~el~q~y~en-~n~~l~~lWer~ve~d--------fnDvv~~ReLa~~ 141 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGES---------KMALLELLQCYKEN-GNEQLYSLWERLVEYD--------FNDVVIGRELADK 141 (711)
T ss_pred hHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--------chhHHHHHHHHHH
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCCcHHHHHHHHH
Q 001523 243 LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYIN 322 (1060)
Q Consensus 243 y~~lGdyeEAie~lqkALeI~rkllg~dh~~t~~al~~La~l~~k~~e~AeAl~~~~~~~d~~~a~~~~~svselL~~Lg 322 (1060)
|.+ ++...+..+|.+++..+ -.......+......+-.-.++....+......+....... ...-++..+-
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrf-----I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~ 212 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRF-----IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEG---RGSVLMQDVY 212 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHh-----cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccc---hHHHHHHHHH
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHhhhhcCC
Q 001523 323 PSHDTKGRNVSTLKRKTYVAKVKGNFYQD 351 (1060)
Q Consensus 323 ~~y~~qGqyeEAl~~YeqALkL~~ki~~~ 351 (1060)
.-|....++.+|+..++-.|+...+..++
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhH
No 461
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.04 E-value=28 Score=43.99 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHh
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE---GLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~---~lGdydEAie~yekALei~eei 224 (1060)
...+..++-..|....+|+.-+++.+..-.+-.. + +........+..|.++. .-|+-++|+.....+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t-~--~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e--- 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDT-L--KVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE--- 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcch-h--hhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc---
Confidence 4566778888899999999888777654443100 0 00000011122233333 3477788888777776632
Q ss_pred cCCCcHHHHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHHH
Q 001523 225 LGPDHIQTAASYHAIAIALSL---------MEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 225 lG~dhp~~a~a~~nLA~ly~~---------lGdyeEAie~lqkALeI~ 263 (1060)
|+-.+ +.|+..|++|.. .+..+.|++||++|.+..
T Consensus 274 -g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 274 -GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred -CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 22222 345556677653 355567888888888763
No 462
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.68 E-value=5.2e+02 Score=30.43 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=51.3
Q ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 59 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAY-SLLAVVLYHTGDFNQATIYQQKALDIN 137 (1060)
Q Consensus 59 ~~~s~dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~-~~LA~ly~~lGdyeeAle~yqKALeL~ 137 (1060)
.-......++|..|+..+.-|+|..|-.++-....+. ...++....++ ..|| .-..+.+|+.|++-+.+.-++.
T Consensus 123 nf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~I 197 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREYI 197 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHH
Confidence 3345567889999999999999999988776655443 23344344444 4444 3344578999999888876664
No 463
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.21 E-value=2e+02 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcC
Q 001523 233 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 233 a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg 268 (1060)
+..+...|.-+-..|++.+|+.+|+++++.+.+.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444556677778899999999999999999887653
No 464
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.11 E-value=92 Score=27.44 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 98 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~eki 98 (1060)
.|..+...|..+-..|++++|+.+|.++++.+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999999987654
No 465
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.91 E-value=4.5e+02 Score=28.73 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---cC
Q 001523 152 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL---LG 226 (1060)
Q Consensus 152 y~nLA~lY~~lGdyeeAleyyekALei~ee~~g--~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eei---lG 226 (1060)
+...+......|++++|...+++|.+...++.. ..+| .++.-|.+-..+..|-+|..+|.-.-.-..-. +|
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~p----el~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFP----ELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Confidence 555666777889999999999998877655320 0122 12233444444555666655553222111000 00
Q ss_pred CCcHH----HHHH---HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcCCCCHHH
Q 001523 227 PDHIQ----TAAS---YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 274 (1060)
Q Consensus 227 ~dhp~----~a~a---~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg~dh~~t 274 (1060)
-.... .+++ +..........|+++.|..+++-.-.++..+..-+.|..
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~ 162 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKA 162 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 00000 0111 112222335779999999988877777766655555544
No 466
>PRK12798 chemotaxis protein; Reviewed
Probab=44.87 E-value=6.5e+02 Score=30.53 Aligned_cols=171 Identities=14% Similarity=0.012 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 001523 69 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL-LAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 147 (1060)
Q Consensus 69 lelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~-LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~ 147 (1060)
+..|...+-.|+-.+|.+.+....... -+.....+.. ..-..+...+..+|+.+|..+--+. +...-
T Consensus 116 L~~g~laY~~Gr~~~a~~~La~i~~~~-------l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla-----PGTLv 183 (421)
T PRK12798 116 LADGALAYLSGRGREARKLLAGVAPEY-------LPAELGAYLALVQGNLMVATDPATALKLLDQARLLA-----PGTLV 183 (421)
T ss_pred HHHHHHHHHcCCHHHHHHHhhcCChhh-------cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC-----CchHH
Confidence 334666677888888887776554321 1222223333 3334445678999999999885442 11111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 001523 148 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 227 (1060)
Q Consensus 148 ~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~ 227 (1060)
--.++..--.+....|+.+++..|..+-+..+.. .+.....+..+...+....+-. -.+.+...+...
T Consensus 184 EEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~-----S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~------ 251 (421)
T PRK12798 184 EEAALRRSLFIAAQLGDADKFEALARNYLRRFRH-----SPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFM------ 251 (421)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhc------
Confidence 1123344445557889999998888887776543 3444444444454554444211 112244444332
Q ss_pred CcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 228 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 228 dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
+.......|..+|..-.-.|+.+-|...-.+++.+.
T Consensus 252 d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 252 DPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 334556789999999999999999999999999885
No 467
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.75 E-value=3e+02 Score=36.53 Aligned_cols=53 Identities=23% Similarity=0.036 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLY 118 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~ 118 (1060)
.+|..-..|..++-.|++..|++.|..|+++++.. .|+.+.+.++-....|..
T Consensus 244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t--~DyLWlg~AldG~tVC~L 296 (1235)
T KOG1953|consen 244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKAT--GDYLWLGLALDGFTVCLL 296 (1235)
T ss_pred HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhh--hhheeehhhccchhHHHH
Confidence 35566667888888899999999999999998876 566666666655444433
No 468
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=4.9e+02 Score=32.39 Aligned_cols=161 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHh---------------cCCCChhHHHHHHHHHHHHHHcC
Q 001523 102 YHRMTAGAYSLLAVVL---YHTGDFNQATIYQQKALDINERE---------------LGLDHPDTMKSYGDLAVFYYRLQ 163 (1060)
Q Consensus 102 d~p~~A~A~~~LA~ly---~~lGdyeeAle~yqKALeL~ek~---------------~g~d~p~~a~ay~nLA~lY~~lG 163 (1060)
.++....++.....+. ...+.+++=+..+++|+.-++.. ..........+|...-.+.....
T Consensus 275 ~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tis 354 (593)
T KOG2460|consen 275 IDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTIS 354 (593)
T ss_pred ccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHh
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001523 164 HTELALKYVKRALYLLHLTCGPS--HPNTAATYINVAMMEEGLGNVH--VALRYLHKALKCNQRLLGPDHIQTAASYHAI 239 (1060)
Q Consensus 164 dyeeAleyyekALei~ee~~g~d--~p~~a~a~~nLA~iy~~lGdyd--EAie~yekALei~eeilG~dhp~~a~a~~nL 239 (1060)
+++.|...+.....-.....+.. ..+....|-.+-..+...-+.. +--.-|...++..... ..+.-++.+
T Consensus 355 R~~~~~~n~~~~~ls~~~~~~~k~rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~~------fkafRC~~i 428 (593)
T KOG2460|consen 355 RNEDAFTNLWNQWLSQQTSDPKKLRPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKLY------FKAFRCFYI 428 (593)
T ss_pred HHHHHHhhhHHHHHHhCcccccccCHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHH------HHHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHcC
Q 001523 240 AIALSLMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 240 A~ly~~lGdyeEAie~lqkALeI~rkllg 268 (1060)
|..|...++|.+|+.+|.+|...+.+..+
T Consensus 429 A~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 429 AVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=44.55 E-value=7e+02 Score=32.62 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHH-HHHH-HHHHHHHHHHHhCC
Q 001523 107 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE-LALK-YVKRALYLLHLTCG 184 (1060)
Q Consensus 107 A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdye-eAle-yyekALei~ee~~g 184 (1060)
...+..-|.+--..+--+-|-+.|.+|+.++++... +......+...+...+.+...+. +-.+ ...++.....+++
T Consensus 592 lkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~Is-DSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLL- 669 (762)
T PF03635_consen 592 LKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEIS-DSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLL- 669 (762)
T ss_dssp HHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-S-
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhc-
Confidence 345555555555555445588999999999987553 44445556666666665555443 2222 2223333233333
Q ss_pred CCChhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHhc
Q 001523 185 PSHPNTAATYINVAMMEEGLG----------NVHVALRYLHKALKCNQRLL 225 (1060)
Q Consensus 185 ~d~p~~a~a~~nLA~iy~~lG----------dydEAie~yekALei~eeil 225 (1060)
..++.+++.+.-+.+++... +-...++|+++|++++....
T Consensus 670 -KK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 670 -KKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp -SHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred -CcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 45677777777788877654 45678899999999997663
No 470
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=44.33 E-value=4.2e+02 Score=31.01 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~e 222 (1060)
+.+++.+|......+++-+|+.+++.|....+
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRNLK 284 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 34556666666667777777777777766543
No 471
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.27 E-value=38 Score=35.14 Aligned_cols=111 Identities=19% Similarity=-0.013 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------C-----------------------CC--ChhHHHHHHHHHH
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVC------G-----------------------PY--HRMTAGAYSLLAV 115 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALel~ekil------g-----------------------~d--~p~~A~A~~~LA~ 115 (1060)
.....|+..+..|+.++|+..+.+|...+.... . .+ ...........+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 345678888999999999999999988754221 0 00 1123456667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 116 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 116 ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
-+...|+...|.+.++-+-.-..-..-.-...........|..+...|+|.+|...+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88899999999887765522100000000112344556788889999999999999998875
No 472
>PRK09169 hypothetical protein; Validated
Probab=42.62 E-value=5.3e+02 Score=37.45 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 195 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 195 ~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
..+++++..+.+|.+...+-.-+..++.++........+..-..|+..+..+-++.+...+-+-++.+....
T Consensus 709 q~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~l 780 (2316)
T PRK09169 709 QGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLAERL 780 (2316)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 456666666666665444333333444333211111111122334445544445544444444455554444
No 473
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.27 E-value=1.7e+02 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHcC
Q 001523 236 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 268 (1060)
Q Consensus 236 ~~nLA~ly~~lGdyeEAie~lqkALeI~rkllg 268 (1060)
+...|.-+-..|++++|+.+|.++++.+...+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 444566667799999999999999998876543
No 474
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=40.32 E-value=9.4e+02 Score=31.10 Aligned_cols=145 Identities=9% Similarity=0.013 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 144 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d 144 (1060)
-|++.++|.|.+.+|...+|..++.....- ..+.=+..-|......++...-....++..++-- .-.-
T Consensus 530 NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st----------~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPy--HmHI 597 (843)
T KOG1076|consen 530 NRTMVQLGLCAFRQGMIKEAHQCLSDLQST----------GRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPY--HMHI 597 (843)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------chHHHHHhhhhhhhhhhccChhhHHHHHhhcCch--hhhc
Confidence 456667899999999999988877765532 1111222223333322222222222222222100 0001
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001523 145 HPDTMKSYGDLAVFYYRLQHTELA---------LKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 215 (1060)
Q Consensus 145 ~p~~a~ay~nLA~lY~~lGdyeeA---------leyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~ye 215 (1060)
..++..+.+....+++..-....+ -+-|++.|+..++..-...|...+-+...|.-....|+|.++.++..
T Consensus 598 NLELlEcVyLtcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~ 677 (843)
T KOG1076|consen 598 NLELLECVYLTCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIV 677 (843)
T ss_pred cHHHHHHHHHHHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122334433333333322221111 13455666665554444567788888888888889999999999887
Q ss_pred HHHHHH
Q 001523 216 KALKCN 221 (1060)
Q Consensus 216 kALei~ 221 (1060)
.-++++
T Consensus 678 nn~KvW 683 (843)
T KOG1076|consen 678 NNIKVW 683 (843)
T ss_pred hhhhHH
Confidence 766655
No 475
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.22 E-value=1.7e+02 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 65 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 65 AraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
+..+...|...-..|+|++|+.+|.++++.+...+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 45566677778888999999999999999887654
No 476
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.94 E-value=94 Score=34.51 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 001523 73 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 148 (1060)
Q Consensus 73 ~~yl~qGdyeEAi~~fekALel~ekilg~d~p~----~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~ 148 (1060)
..+++.|+|+.|+++..-||+.-...-....+. .++-...-+......|.--+. .+++....+... ..-...-.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~-~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTE-WDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhc-CCCChHHH
Confidence 345788999999999999998743321111111 223333344444555542111 123333333221 11222335
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHH
Q 001523 149 MKSYGDLAVFYY---------RLQHTELALKYVKRALYLLHL 181 (1060)
Q Consensus 149 a~ay~nLA~lY~---------~lGdyeeAleyyekALei~ee 181 (1060)
+..|-.+|..+. ..++...|+.++++|+++..+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 666777788773 456788999999999997543
No 477
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.83 E-value=1.8e+02 Score=26.01 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
.|..++..|..+-..|++++|+.+|.++++.+...+
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 355677778888889999999999999999887654
No 478
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=39.82 E-value=5e+02 Score=32.71 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHH
Q 001523 142 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-ALKC 220 (1060)
Q Consensus 142 g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yek-ALei 220 (1060)
++.++.+..... +...+...++...|.-.+..++.. .+..+.+..+||......|..-.+...+.+ +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455666655555 888888888887777777776663 455677888898888877776666655544 3332
Q ss_pred HHHhcCCCcHH---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 221 NQRLLGPDHIQ---TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 221 ~eeilG~dhp~---~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
. +.... ....++.++.....+|+..++...+.++.++.
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 132 S-----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred C-----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 2 11111 11223337888889999999988888887764
No 479
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=39.64 E-value=1e+02 Score=35.93 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 266 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~rkl 266 (1060)
.+.+++.+|..+...+++-+|+.+++.|...++..
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 34556667777777888888888888877766544
No 480
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=39.43 E-value=2.2e+02 Score=31.16 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=10.5
Q ss_pred ccccCCCCCCCCCCCC
Q 001523 797 ATVLPTVNPMCSSPHQ 812 (1060)
Q Consensus 797 ~~~~~~~~p~~~sp~~ 812 (1060)
-++.|+.+|.-.+|||
T Consensus 70 G~~hPs~~Pfgp~phh 85 (212)
T PF15336_consen 70 GAAHPSANPFGPSPHH 85 (212)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3456777777666666
No 481
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.22 E-value=7.1e+02 Score=29.40 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 001523 112 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 179 (1060)
Q Consensus 112 ~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ 179 (1060)
.+-...++..+..+-++....||++. +..+.+|..||.- ..--..+|.+.+++|++..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN--------~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEIN--------NECATAYVLLAEE--EATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcC--------chhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH
Confidence 33333444455566666666777662 4556666666542 2233566777777777653
No 482
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.17 E-value=1e+03 Score=31.25 Aligned_cols=149 Identities=8% Similarity=0.003 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHh
Q 001523 104 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY-RLQHTELALKYVKRALYLLHLT 182 (1060)
Q Consensus 104 p~~A~A~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g~d~p~~a~ay~nLA~lY~-~lGdyeeAleyyekALei~ee~ 182 (1060)
......+..|-.+++..|++++-...-+++.+++ +..+.+..-| ....+++ ..++-.++...|++++.-+...
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~W-l~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEW-LKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHH-HHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 3445567777788889999988776666666554 2223222222 2222222 2356677788888887632111
Q ss_pred CCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 183 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 183 ~g~d~p~~a~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
- .....+..++..+..+...++++.-...|.+||...-.... ....++..|..+...|...-..++-+.++...+.
T Consensus 184 ~--iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 184 P--IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred h--HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 0 01122333344445556678899999999999886533221 2223344455455555444433444445444443
No 483
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=39.08 E-value=17 Score=29.82 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.3
Q ss_pred cCcceEEEEEeeccc
Q 001523 995 EGEKTFSILVRGRRN 1009 (1060)
Q Consensus 995 ~~~~~~~~~~~~~~~ 1009 (1060)
+|+..|.+.||||.|
T Consensus 6 ~D~E~ftL~VrGRe~ 20 (42)
T PF07710_consen 6 DDEEVFTLQVRGRER 20 (42)
T ss_dssp SCCCEEEEEEESHHH
T ss_pred CCCCEEEEEEecHHH
Confidence 677799999999987
No 484
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.01 E-value=1.8e+02 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
.|..++..|...-..|+|++|+.+|.++++.+...+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999999887653
No 485
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.91 E-value=1.2e+02 Score=28.32 Aligned_cols=34 Identities=18% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 184 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g 184 (1060)
.+.+.|..+-..|+.++|+.+|++++..+.+...
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3445555556678999999999999998877543
No 486
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=37.38 E-value=9.7e+02 Score=30.43 Aligned_cols=68 Identities=7% Similarity=-0.115 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001523 192 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH---IQTAASYHAIAIALSLMEAYPLSVQHEQTTL 260 (1060)
Q Consensus 192 ~a~~nLA~iy~~lGdydEAie~yekALei~eeilG~dh---p~~a~a~~nLA~ly~~lGdyeEAie~lqkAL 260 (1060)
.++.....-+...++|.+|.+++...- +...+...+. ..+-++...||.|.++.|.+.+|..++....
T Consensus 457 rA~Lc~IY~~AL~d~~~~ARDllLmSh-lqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~ 527 (595)
T PF05470_consen 457 RAMLCHIYHHALHDRYYEARDLLLMSH-LQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELC 527 (595)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhH-HHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333445789999998886432 1222212221 1233566789999999999999998887654
No 487
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.89 E-value=7.2e+02 Score=28.75 Aligned_cols=187 Identities=14% Similarity=0.048 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCC-----h---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 65 GRQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYH-----R---MTAGAYSLLAVVLYHTGDFNQATIYQQKALD 135 (1060)
Q Consensus 65 AraLlelA~~yl~qG-dyeEAi~~fekALel~ekilg~d~-----p---~~A~A~~~LA~ly~~lGdyeeAle~yqKALe 135 (1060)
-..+..++..+..+. .+-.+.++.+.++=.-...+.... + -.+.....+-..+ ..+++.+.++..++.+.
T Consensus 49 ~~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~ 127 (301)
T TIGR03362 49 RDTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVADYQELL-AQADWAALLQRVEQSLS 127 (301)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 344555666666664 345666666655533222222111 0 0122222333333 45677777776666665
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------CCCh---hHHHH-----------
Q 001523 136 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--------PSHP---NTAAT----------- 193 (1060)
Q Consensus 136 L~ek~~g~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g--------~d~p---~~a~a----------- 193 (1060)
. .+......+..+.++.++| ++.+....+..+..+...+- ...| .....
T Consensus 128 ~--------~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~ 198 (301)
T TIGR03362 128 L--------APFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQHATRSNA 198 (301)
T ss_pred h--------CchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHhccccccc
Confidence 4 4667888889999999999 57777766666655433110 0000 00011
Q ss_pred -----------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 001523 194 -----------------YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 256 (1060)
Q Consensus 194 -----------------~~nLA~iy~~lGdydEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~l 256 (1060)
...-+..+...+.+++|+..++..+... ..........+.++.++...|.++.|..+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~-----~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll 273 (301)
T TIGR03362 199 ASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA-----REPRERFHWRLLLARLLEQAGKAELAQQLY 273 (301)
T ss_pred ccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122444556667777777766544322 222344556677899999999999999999
Q ss_pred HHHHHHHHHH
Q 001523 257 QTTLQILRAK 266 (1060)
Q Consensus 257 qkALeI~rkl 266 (1060)
++..+..+..
T Consensus 274 ~~L~~~~~~~ 283 (301)
T TIGR03362 274 AALDQQIQQL 283 (301)
T ss_pred HHHHHHHHhC
Confidence 9888776543
No 488
>PF12854 PPR_1: PPR repeat
Probab=36.38 E-value=61 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001523 149 MKSYGDLAVFYYRLQHTELALKYVKR 174 (1060)
Q Consensus 149 a~ay~nLA~lY~~lGdyeeAleyyek 174 (1060)
..+|+.|-..|++.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45789999999999999999999876
No 489
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=36.29 E-value=4.5e+02 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHH
Q 001523 64 DGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLV 96 (1060)
Q Consensus 64 dAraLlelA~~yl~qG---------dyeEAi~~fekALel~e 96 (1060)
.+..+|++|-+|.+.| .+.+|..+|++|--.++
T Consensus 113 ka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~ 154 (361)
T cd09239 113 EASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFA 154 (361)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 3556666666665443 15567777777665543
No 490
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.91 E-value=1.8e+02 Score=32.41 Aligned_cols=108 Identities=17% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhH
Q 001523 115 VVLYHTGDFNQATIYQQKALDINERELGL---D-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 190 (1060)
Q Consensus 115 ~ly~~lGdyeeAle~yqKALeL~ek~~g~---d-~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~ 190 (1060)
..++..|+|+.|+++...||+........ + ...++.-...-+......|+--+ -+|.+.+........-.....
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e--~~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVE--PYFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHhcCCCChHHH
Confidence 34456799999999999999864322110 1 11233444455555556665222 123333332222222233445
Q ss_pred HHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHHHHh
Q 001523 191 AATYINVAMMEE---------GLGNVHVALRYLHKALKCNQRL 224 (1060)
Q Consensus 191 a~a~~nLA~iy~---------~lGdydEAie~yekALei~eei 224 (1060)
+..|-.+|..+. ..+++..|+.+|++|+.+..+.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 667777788773 4568889999999999986443
No 491
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.37 E-value=3.3e+02 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHc
Q 001523 236 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 267 (1060)
Q Consensus 236 ~~nLA~ly~~lGdyeEAie~lqkALeI~rkll 267 (1060)
+...|.-+-..|+|++|+.+|.++++.+...+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33445556678999999999999999987754
No 492
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=35.26 E-value=8e+02 Score=28.82 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 232 TAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 232 ~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
.+.+++..|..+...+++-+|+..++.|...+
T Consensus 246 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 246 RAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 45566777777778888888888888886644
No 493
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=35.16 E-value=5.9e+02 Score=30.13 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 001523 191 AATYINVAMMEEGLGNVHVALRYLHKALKCN 221 (1060)
Q Consensus 191 a~a~~nLA~iy~~lGdydEAie~yekALei~ 221 (1060)
+.+++..|..+...+++-+|+.+++.|..+.
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555433
No 494
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.70 E-value=6.5e+02 Score=27.58 Aligned_cols=104 Identities=22% Similarity=0.110 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 001523 110 YSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 187 (1060)
Q Consensus 110 ~~~LA~ly~~lGdyeeAle~yqKALeL~ek~~g--~d~p~~a~ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~ 187 (1060)
+...+....+.|++++|...+.+|.+...++.. ..+|+ .+.-|.|-..+..|-+|..+|.-...- ....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe----l~~ag~~~~a~QEyvEA~~l~~~l~~~-----~~ps 102 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE----LYFAGFVTTALQEYVEATLLYSILKDG-----RLPS 102 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHhhcchHHHHHHHHHHHHHHhcC-----CCCC
Confidence 445566778899999999999999887765421 11221 223344444556667776555432221 1111
Q ss_pred hh-----HHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHHH
Q 001523 188 PN-----TAATYINVA----------MMEEGLGNVHVALRYLHKALKCNQ 222 (1060)
Q Consensus 188 p~-----~a~a~~nLA----------~iy~~lGdydEAie~yekALei~e 222 (1060)
+. .......+| ......|++++|..+++-.-.++.
T Consensus 103 ~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~ 152 (204)
T COG2178 103 PEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYE 152 (204)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 11 111222222 234567888888887765555543
No 495
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.55 E-value=3.3e+02 Score=35.99 Aligned_cols=177 Identities=13% Similarity=0.019 Sum_probs=80.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhcCCCChhHHH
Q 001523 72 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQ-ATIYQQKALDINERELGLDHPDTMK 150 (1060)
Q Consensus 72 A~~yl~qGdyeEAi~~fekALel~ekilg~d~p~~A~A~~~LA~ly~~lGdyee-Ale~yqKALeL~ek~~g~d~p~~a~ 150 (1060)
+..++.-|.+..|...|..+.+.+... ..-...+.++-..+..++.+.+-.+ -.+|.+-+...+...... ......
T Consensus 183 aD~~~~f~h~~~a~~~y~stkrd~~nd--~am~~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~-~~~A~r 259 (960)
T KOG1938|consen 183 ADLLFMFGHPNLAFDAYHSTKRDFNND--KAMVYYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKN-YQDANR 259 (960)
T ss_pred cchhhhhccccchhhhhhhhhcchhhh--hHHhHhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhh-ccchhh
Confidence 445555566777777777766543211 0001122333333444444444444 344555555444433222 122334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH-----------------------HHHHHHHCCCH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN-----------------------VAMMEEGLGNV 207 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALei~ee~~g~d~p~~a~a~~n-----------------------LA~iy~~lGdy 207 (1060)
+..+.+.++..++.|.+|.+.+-+... ++......++.. -|..|-..|..
T Consensus 260 c~l~~aei~k~~~lh~eaa~~~~r~~s-------ee~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp 332 (960)
T KOG1938|consen 260 CVLNSAEILKFLGLHKEAAEALARETS-------EEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQP 332 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHhhC-------cCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCCh
Confidence 455556666666665555544433221 111111111111 23334455668
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001523 208 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 261 (1060)
Q Consensus 208 dEAie~yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALe 261 (1060)
..|+++|..++..+... .........++.++..|...+ .+.|...+.+++.
T Consensus 333 ~ha~R~y~~ai~v~~~~--~ws~~edh~~f~i~~~y~l~~-~D~a~~~f~~~i~ 383 (960)
T KOG1938|consen 333 KHALRCYRQAIPVLKKP--TWSFAEDHLYFTILHVYLLCQ-EDDADEEFSKLIA 383 (960)
T ss_pred hHHHHHHHHHhhhcCCC--CcchhHHhHHHhHHHhhhhhc-chhHHHHHHHHHh
Confidence 88899999988876322 111122234455555443333 3444444444443
No 496
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.16 E-value=1.2e+03 Score=30.53 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 67 QLLESSKTALDKGKLEDAVTYGTKALA 93 (1060)
Q Consensus 67 aLlelA~~yl~qGdyeEAi~~fekALe 93 (1060)
..-.+|..|+..++|..|+..|.++.+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 333489999999999999999987654
No 497
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.02 E-value=53 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 477888999999999999999988764
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.58 E-value=1.8e+02 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 001523 64 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 99 (1060)
Q Consensus 64 dAraLlelA~~yl~qGdyeEAi~~fekALel~ekil 99 (1060)
.|..++..|..+-..|+.++|+.+|++++..+...+
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 366777788888888999999999999998877653
No 499
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.50 E-value=72 Score=22.86 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001523 151 SYGDLAVFYYRLQHTELALKYVKRALY 177 (1060)
Q Consensus 151 ay~nLA~lY~~lGdyeeAleyyekALe 177 (1060)
+|+.+-..|.+.|++++|.++|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999998754
No 500
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=33.32 E-value=1.2e+03 Score=30.24 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001523 214 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 263 (1060)
Q Consensus 214 yekALei~eeilG~dhp~~a~a~~nLA~ly~~lGdyeEAie~lqkALeI~ 263 (1060)
|++.|+..++..-.-.|...+-|...|.-.+..|+|.++..+...-++++
T Consensus 634 frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW 683 (843)
T KOG1076|consen 634 FRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVW 683 (843)
T ss_pred HHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHH
Confidence 44555554443222235566667667777788999999999776545544
Done!