Query 001524
Match_columns 1060
No_of_seqs 488 out of 2548
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0387 Transcription-coupled 100.0 3E-118 7E-123 1029.4 45.2 638 372-1057 182-836 (923)
2 KOG0385 Chromatin remodeling c 100.0 4.1E-93 9E-98 816.3 40.1 476 388-924 159-647 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 3.6E-88 7.8E-93 791.3 36.2 520 378-923 598-1431(1958)
4 KOG0392 SNF2 family DNA-depend 100.0 1.6E-86 3.4E-91 788.8 41.6 495 385-921 965-1496(1549)
5 KOG0389 SNF2 family DNA-depend 100.0 4.8E-86 1E-90 761.4 38.6 492 394-906 398-914 (941)
6 KOG0384 Chromodomain-helicase 100.0 1.3E-84 2.7E-89 777.6 38.0 474 394-925 369-862 (1373)
7 KOG1015 Transcription regulato 100.0 3.6E-83 7.8E-88 739.3 34.0 584 385-983 658-1373(1567)
8 PLN03142 Probable chromatin-re 100.0 9.6E-82 2.1E-86 782.8 47.2 477 387-924 161-645 (1033)
9 KOG0388 SNF2 family DNA-depend 100.0 1.5E-80 3.3E-85 701.9 32.8 487 384-903 556-1177(1185)
10 KOG0390 DNA repair protein, SN 100.0 9.6E-78 2.1E-82 715.3 40.2 503 384-923 227-751 (776)
11 KOG0386 Chromatin remodeling c 100.0 1.7E-76 3.6E-81 696.3 28.3 459 393-902 392-860 (1157)
12 KOG1002 Nucleotide excision re 100.0 1.8E-72 4E-77 617.7 39.9 515 386-920 175-790 (791)
13 KOG1016 Predicted DNA helicase 100.0 7.7E-71 1.7E-75 626.2 31.2 532 383-923 242-892 (1387)
14 KOG4439 RNA polymerase II tran 100.0 1.5E-69 3.2E-74 617.1 37.2 518 379-921 309-901 (901)
15 COG0553 HepA Superfamily II DN 100.0 6.1E-62 1.3E-66 623.2 38.0 492 390-921 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.7E-55 3.8E-60 485.5 31.8 433 387-907 190-630 (689)
17 PRK04914 ATP-dependent helicas 100.0 4.1E-54 8.9E-59 534.7 33.0 441 391-905 148-630 (956)
18 KOG1001 Helicase-like transcri 100.0 3.8E-52 8.3E-57 500.4 27.1 470 400-903 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 1.6E-43 3.5E-48 419.4 10.8 378 394-834 294-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 1.2E-38 2.7E-43 384.5 36.2 353 393-888 253-615 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 2.3E-39 5E-44 363.3 21.5 272 399-704 1-299 (299)
22 COG1111 MPH1 ERCC4-like helica 100.0 2E-35 4.3E-40 331.9 36.6 460 394-902 14-503 (542)
23 PRK13766 Hef nuclease; Provisi 100.0 9.7E-36 2.1E-40 376.3 37.6 464 394-898 14-497 (773)
24 KOG0298 DEAD box-containing he 100.0 5.3E-34 1.1E-38 344.9 20.9 268 414-704 374-691 (1394)
25 KOG0354 DEAD-box like helicase 100.0 1.2E-29 2.5E-34 300.9 36.5 462 393-904 60-552 (746)
26 COG1061 SSL2 DNA or RNA helica 100.0 2.2E-28 4.9E-33 288.2 34.3 369 391-892 32-406 (442)
27 PHA02558 uvsW UvsW helicase; P 100.0 2.6E-28 5.7E-33 292.9 34.8 338 394-880 113-455 (501)
28 KOG1123 RNA polymerase II tran 100.0 6.3E-30 1.4E-34 283.3 17.5 358 388-886 295-659 (776)
29 PTZ00110 helicase; Provisional 100.0 1.1E-26 2.4E-31 280.9 33.4 321 394-880 151-484 (545)
30 TIGR00614 recQ_fam ATP-depende 100.0 3.5E-27 7.5E-32 281.6 26.1 310 394-874 10-329 (470)
31 PRK04837 ATP-dependent RNA hel 99.9 3.3E-26 7.2E-31 270.1 29.4 316 394-879 29-361 (423)
32 PRK10590 ATP-dependent RNA hel 99.9 4.9E-26 1.1E-30 270.9 29.9 314 393-873 21-347 (456)
33 PLN00206 DEAD-box ATP-dependen 99.9 5.3E-26 1.1E-30 274.1 30.3 318 393-879 141-474 (518)
34 PRK11776 ATP-dependent RNA hel 99.9 9.4E-26 2E-30 269.1 30.9 317 394-880 25-349 (460)
35 PRK11192 ATP-dependent RNA hel 99.9 1.1E-25 2.3E-30 266.8 31.1 316 394-874 22-348 (434)
36 PRK04537 ATP-dependent RNA hel 99.9 1.1E-25 2.3E-30 273.3 30.7 315 393-873 29-359 (572)
37 PRK01297 ATP-dependent RNA hel 99.9 2.5E-25 5.5E-30 266.3 31.7 313 394-873 108-437 (475)
38 PRK11057 ATP-dependent DNA hel 99.9 1.6E-25 3.6E-30 274.3 30.4 305 394-873 24-338 (607)
39 TIGR01389 recQ ATP-dependent D 99.9 2E-25 4.4E-30 273.8 30.1 305 394-873 12-326 (591)
40 PTZ00424 helicase 45; Provisio 99.9 7.1E-25 1.5E-29 257.1 29.8 319 394-880 49-374 (401)
41 PLN03137 ATP-dependent DNA hel 99.9 1.1E-25 2.4E-30 278.1 23.6 315 393-875 458-784 (1195)
42 PRK11634 ATP-dependent RNA hel 99.9 1.2E-24 2.6E-29 265.7 31.5 313 394-874 27-348 (629)
43 KOG0331 ATP-dependent RNA heli 99.9 6.8E-25 1.5E-29 253.8 25.3 319 393-874 111-444 (519)
44 KOG0330 ATP-dependent RNA heli 99.9 8.4E-25 1.8E-29 238.0 22.0 323 393-883 81-410 (476)
45 TIGR03817 DECH_helic helicase/ 99.9 1.1E-22 2.3E-27 253.3 32.0 339 394-888 35-394 (742)
46 TIGR00643 recG ATP-dependent D 99.9 2.3E-22 5.1E-27 247.5 32.8 308 392-874 232-562 (630)
47 COG0514 RecQ Superfamily II DN 99.9 2.5E-23 5.4E-28 245.1 22.1 315 394-883 16-340 (590)
48 PRK10917 ATP-dependent DNA hel 99.9 3.8E-22 8.3E-27 247.2 32.6 306 392-873 258-584 (681)
49 PRK13767 ATP-dependent helicas 99.9 3E-22 6.6E-27 253.9 31.2 329 394-875 31-395 (876)
50 PRK11448 hsdR type I restricti 99.9 5E-22 1.1E-26 253.7 32.9 365 394-877 412-815 (1123)
51 TIGR00580 mfd transcription-re 99.9 4.1E-22 8.9E-27 250.4 30.1 308 392-879 448-769 (926)
52 COG0513 SrmB Superfamily II DN 99.9 9.6E-22 2.1E-26 236.0 31.8 333 393-892 49-391 (513)
53 PRK10689 transcription-repair 99.9 6.2E-21 1.4E-25 244.6 34.2 304 391-872 596-913 (1147)
54 PRK02362 ski2-like helicase; P 99.9 4E-21 8.6E-26 241.2 29.1 318 394-879 22-396 (737)
55 KOG0333 U5 snRNP-like RNA heli 99.9 1E-20 2.3E-25 212.4 21.9 124 751-880 501-624 (673)
56 PRK01172 ski2-like helicase; P 99.9 3.9E-20 8.4E-25 230.6 28.9 309 394-873 21-371 (674)
57 TIGR03714 secA2 accessory Sec 99.9 6.2E-20 1.3E-24 222.8 29.0 118 751-873 406-532 (762)
58 KOG0328 Predicted ATP-dependen 99.9 3E-21 6.6E-26 202.1 14.1 318 398-882 52-375 (400)
59 PRK00254 ski2-like helicase; P 99.9 1.3E-19 2.9E-24 227.0 30.2 159 394-575 22-187 (720)
60 TIGR01587 cas3_core CRISPR-ass 99.8 2.4E-19 5.1E-24 207.3 28.7 121 754-880 208-338 (358)
61 KOG0350 DEAD-box ATP-dependent 99.8 6.8E-20 1.5E-24 205.1 21.5 370 393-894 157-552 (620)
62 KOG0338 ATP-dependent RNA heli 99.8 1.2E-19 2.7E-24 203.0 20.7 327 394-889 202-540 (691)
63 KOG0335 ATP-dependent RNA heli 99.8 1.5E-19 3.3E-24 206.3 20.9 316 393-874 94-440 (482)
64 COG4096 HsdR Type I site-speci 99.8 4.5E-20 9.7E-25 218.9 16.5 369 386-877 156-545 (875)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.1E-18 4.5E-23 211.6 29.6 100 768-872 271-384 (844)
66 KOG0342 ATP-dependent RNA heli 99.8 6.3E-19 1.4E-23 197.8 21.2 314 394-871 103-430 (543)
67 TIGR00348 hsdR type I site-spe 99.8 5.7E-18 1.2E-22 209.3 31.7 161 392-568 235-405 (667)
68 KOG0351 ATP-dependent DNA heli 99.8 2.2E-19 4.8E-24 223.0 18.8 317 394-877 263-591 (941)
69 KOG0340 ATP-dependent RNA heli 99.8 1.2E-18 2.6E-23 188.4 21.2 318 395-871 29-354 (442)
70 KOG0348 ATP-dependent RNA heli 99.8 1.7E-18 3.6E-23 195.1 22.0 126 754-883 408-557 (708)
71 PRK09200 preprotein translocas 99.8 6.1E-18 1.3E-22 207.5 28.7 129 752-889 411-547 (790)
72 KOG0343 RNA Helicase [RNA proc 99.8 2.8E-18 6E-23 193.8 23.5 328 393-893 89-434 (758)
73 COG1201 Lhr Lhr-like helicases 99.8 4.5E-18 9.8E-23 207.6 25.7 337 393-893 20-373 (814)
74 PRK12898 secA preprotein trans 99.8 2.3E-17 5E-22 198.5 29.9 129 752-889 456-592 (656)
75 PRK09751 putative ATP-dependen 99.8 1E-17 2.2E-22 216.2 27.6 96 768-865 243-371 (1490)
76 KOG0345 ATP-dependent RNA heli 99.8 3.1E-17 6.8E-22 183.0 26.4 318 394-874 27-360 (567)
77 COG1205 Distinct helicase fami 99.8 1.1E-17 2.5E-22 209.3 25.2 334 396-888 71-430 (851)
78 PHA02653 RNA helicase NPH-II; 99.8 2.3E-17 5E-22 201.4 27.0 108 768-882 394-516 (675)
79 TIGR00963 secA preprotein tran 99.8 1.8E-17 3.9E-22 200.3 24.9 119 752-874 388-513 (745)
80 TIGR03158 cas3_cyano CRISPR-as 99.8 5E-17 1.1E-21 187.5 26.9 85 768-863 271-357 (357)
81 PRK09401 reverse gyrase; Revie 99.8 4.4E-17 9.5E-22 209.9 27.3 104 754-866 316-432 (1176)
82 KOG0339 ATP-dependent RNA heli 99.8 4.9E-17 1.1E-21 182.0 23.3 126 753-883 453-578 (731)
83 COG1200 RecG RecG-like helicas 99.7 2.5E-16 5.3E-21 185.6 27.2 307 391-873 258-586 (677)
84 KOG4284 DEAD box protein [Tran 99.7 2.1E-17 4.7E-22 189.0 17.6 315 397-872 49-373 (980)
85 KOG0347 RNA helicase [RNA proc 99.7 1.5E-17 3.2E-22 188.1 15.0 98 770-869 464-561 (731)
86 KOG0344 ATP-dependent RNA heli 99.7 7E-17 1.5E-21 185.5 19.6 118 752-873 372-490 (593)
87 KOG0352 ATP-dependent DNA heli 99.7 1.4E-16 3.1E-21 175.1 20.2 321 398-875 23-359 (641)
88 KOG0336 ATP-dependent RNA heli 99.7 2.3E-16 5.1E-21 172.6 21.1 308 396-871 243-565 (629)
89 PRK05580 primosome assembly pr 99.7 1.1E-15 2.5E-20 189.1 28.0 152 394-566 143-305 (679)
90 KOG0326 ATP-dependent RNA heli 99.7 1.4E-17 3.1E-22 177.3 9.0 114 752-869 307-420 (459)
91 COG1204 Superfamily II helicas 99.7 4.1E-16 9E-21 192.9 22.8 311 395-868 31-396 (766)
92 KOG0353 ATP-dependent DNA heli 99.7 8.9E-17 1.9E-21 173.8 13.9 321 394-877 93-466 (695)
93 KOG0334 RNA helicase [RNA proc 99.7 3.3E-16 7.1E-21 190.3 20.1 123 752-879 597-719 (997)
94 TIGR01054 rgy reverse gyrase. 99.7 6.7E-16 1.4E-20 199.3 23.7 131 392-541 75-213 (1171)
95 PRK14701 reverse gyrase; Provi 99.7 1.3E-15 2.9E-20 200.1 26.7 105 757-871 321-449 (1638)
96 COG1202 Superfamily II helicas 99.7 3.8E-16 8.3E-21 177.3 18.5 316 393-880 214-553 (830)
97 KOG0341 DEAD-box protein abstr 99.7 7.4E-17 1.6E-21 175.3 11.2 128 752-886 407-534 (610)
98 PF04851 ResIII: Type III rest 99.7 1.2E-16 2.5E-21 165.8 11.0 166 394-566 2-183 (184)
99 COG4889 Predicted helicase [Ge 99.7 4.7E-16 1E-20 182.4 16.8 168 384-565 150-350 (1518)
100 cd00079 HELICc Helicase superf 99.7 2.8E-16 6E-21 153.8 12.8 120 753-874 12-131 (131)
101 PRK13104 secA preprotein trans 99.7 7.7E-15 1.7E-19 179.9 28.1 119 752-874 427-583 (896)
102 KOG0332 ATP-dependent RNA heli 99.7 2.3E-15 5.1E-20 163.9 20.6 122 753-880 316-443 (477)
103 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3E-15 6.4E-20 187.1 24.7 109 769-882 209-338 (819)
104 TIGR00595 priA primosomal prot 99.7 1.5E-14 3.3E-19 173.2 27.3 93 782-876 271-379 (505)
105 PRK12906 secA preprotein trans 99.7 9.5E-15 2.1E-19 178.4 25.5 118 752-873 423-548 (796)
106 PRK09694 helicase Cas3; Provis 99.6 2.7E-14 5.8E-19 178.7 28.2 104 762-868 553-665 (878)
107 PRK11664 ATP-dependent RNA hel 99.6 1.2E-14 2.6E-19 182.0 24.6 110 768-882 211-341 (812)
108 KOG0346 RNA helicase [RNA proc 99.6 4.8E-15 1E-19 164.3 17.3 311 398-875 44-407 (569)
109 COG1197 Mfd Transcription-repa 99.6 5.8E-14 1.3E-18 174.1 27.8 311 392-879 591-912 (1139)
110 COG4098 comFA Superfamily II D 99.6 1.7E-13 3.8E-18 148.3 27.4 303 392-870 94-406 (441)
111 PRK13107 preprotein translocas 99.6 2.3E-13 5.1E-18 166.5 31.3 120 751-874 431-587 (908)
112 PRK12904 preprotein translocas 99.6 6.9E-14 1.5E-18 171.6 26.5 119 752-874 413-569 (830)
113 smart00487 DEXDc DEAD-like hel 99.6 2.5E-14 5.5E-19 148.9 16.1 159 393-568 6-173 (201)
114 PF00271 Helicase_C: Helicase 99.5 1.1E-14 2.3E-19 130.3 7.1 78 787-866 1-78 (78)
115 cd00046 DEXDc DEAD-like helica 99.5 5.9E-14 1.3E-18 137.5 12.6 139 415-565 1-144 (144)
116 KOG0327 Translation initiation 99.5 7.3E-14 1.6E-18 153.9 13.4 119 754-880 252-370 (397)
117 TIGR00631 uvrb excinuclease AB 99.5 9.8E-12 2.1E-16 152.8 32.5 126 751-881 424-554 (655)
118 PRK12900 secA preprotein trans 99.5 8.6E-12 1.9E-16 153.5 30.5 118 752-873 581-706 (1025)
119 KOG0952 DNA/RNA helicase MER3/ 99.5 1.4E-12 2.9E-17 157.8 22.8 304 411-870 123-481 (1230)
120 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.3E-12 2.8E-17 167.4 24.1 110 768-884 278-408 (1283)
121 KOG0337 ATP-dependent RNA heli 99.5 3.2E-13 6.9E-18 149.5 15.9 321 392-880 40-368 (529)
122 PRK11131 ATP-dependent RNA hel 99.5 3.3E-12 7.2E-17 163.1 26.9 109 768-883 285-414 (1294)
123 COG0556 UvrB Helicase subunit 99.4 4.2E-11 9.1E-16 136.6 27.9 132 756-890 433-569 (663)
124 COG1203 CRISPR-associated heli 99.4 7.4E-12 1.6E-16 156.9 23.1 133 761-896 432-568 (733)
125 cd00268 DEADc DEAD-box helicas 99.4 2.4E-12 5.1E-17 136.6 15.1 156 395-566 21-185 (203)
126 PRK12899 secA preprotein trans 99.4 1.1E-10 2.4E-15 143.6 30.1 118 752-874 551-677 (970)
127 smart00490 HELICc helicase sup 99.4 9.1E-13 2E-17 117.7 8.3 81 784-866 2-82 (82)
128 PRK05298 excinuclease ABC subu 99.4 2.6E-10 5.7E-15 141.1 32.8 125 751-880 428-557 (652)
129 PRK12326 preprotein translocas 99.4 1.2E-10 2.5E-15 140.1 27.4 119 752-874 410-543 (764)
130 PF00270 DEAD: DEAD/DEAH box h 99.4 4.8E-12 1.1E-16 129.7 13.7 158 398-571 2-167 (169)
131 KOG0951 RNA helicase BRR2, DEA 99.3 1E-10 2.2E-15 143.3 19.2 158 414-584 325-501 (1674)
132 PRK13103 secA preprotein trans 99.3 1.4E-09 3E-14 134.0 27.8 120 751-874 431-587 (913)
133 PRK12903 secA preprotein trans 99.2 2.1E-09 4.6E-14 131.1 26.4 120 751-874 408-535 (925)
134 KOG0329 ATP-dependent RNA heli 99.2 4.9E-10 1.1E-14 117.0 15.2 126 398-539 67-197 (387)
135 KOG0947 Cytoplasmic exosomal R 99.1 7E-09 1.5E-13 124.9 24.7 146 393-565 295-444 (1248)
136 TIGR01407 dinG_rel DnaQ family 99.1 3.4E-08 7.4E-13 126.5 31.5 78 768-850 673-756 (850)
137 PF13872 AAA_34: P-loop contai 99.1 1E-09 2.2E-14 120.5 14.3 254 379-672 19-302 (303)
138 TIGR00596 rad1 DNA repair prot 99.1 4.5E-09 9.8E-14 131.1 20.1 85 490-584 4-93 (814)
139 CHL00122 secA preprotein trans 99.0 1.2E-07 2.5E-12 116.9 26.5 83 752-837 407-490 (870)
140 COG1198 PriA Primosomal protei 98.9 3.9E-08 8.5E-13 120.6 18.5 372 394-880 197-605 (730)
141 PRK12901 secA preprotein trans 98.9 4.5E-07 9.7E-12 112.6 27.3 118 752-874 611-737 (1112)
142 COG4581 Superfamily II RNA hel 98.9 8.8E-08 1.9E-12 120.0 21.4 149 392-565 116-270 (1041)
143 KOG0948 Nuclear exosomal RNA h 98.9 6.1E-08 1.3E-12 114.4 18.5 146 393-565 127-276 (1041)
144 KOG0949 Predicted helicase, DE 98.9 1.4E-07 2.9E-12 114.3 21.5 163 398-578 514-682 (1330)
145 COG0610 Type I site-specific r 98.9 6E-08 1.3E-12 124.3 20.0 160 395-569 248-417 (962)
146 COG1110 Reverse gyrase [DNA re 98.8 4.9E-07 1.1E-11 110.8 24.6 129 392-539 79-215 (1187)
147 PRK12902 secA preprotein trans 98.8 1.4E-06 2.9E-11 107.5 28.4 83 752-837 422-505 (939)
148 PF11496 HDA2-3: Class II hist 98.8 7E-08 1.5E-12 107.9 16.1 211 654-891 4-256 (297)
149 KOG0950 DNA polymerase theta/e 98.8 6.7E-08 1.5E-12 117.6 16.9 149 413-578 239-398 (1008)
150 KOG0349 Putative DEAD-box RNA 98.7 9.8E-08 2.1E-12 106.3 13.8 97 768-866 504-603 (725)
151 TIGR00604 rad3 DNA repair heli 98.7 2.1E-06 4.5E-11 108.2 26.0 70 396-465 11-82 (705)
152 PRK08074 bifunctional ATP-depe 98.7 1.2E-05 2.7E-10 103.8 31.3 94 757-852 739-838 (928)
153 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.5E-05 3.3E-10 97.4 30.1 68 400-467 2-70 (636)
154 KOG1513 Nuclear helicase MOP-3 98.6 3.5E-07 7.7E-12 108.2 14.5 197 385-592 254-477 (1300)
155 KOG0922 DEAH-box RNA helicase 98.6 1.8E-06 3.9E-11 102.3 20.0 110 771-882 260-392 (674)
156 PRK07246 bifunctional ATP-depe 98.6 1.5E-05 3.3E-10 101.4 29.7 88 757-849 635-724 (820)
157 COG1199 DinG Rad3-related DNA 98.6 1.9E-05 4.1E-10 99.1 28.5 101 768-872 478-611 (654)
158 KOG0924 mRNA splicing factor A 98.5 1.3E-06 2.7E-11 102.5 15.2 115 771-887 565-704 (1042)
159 COG1643 HrpA HrpA-like helicas 98.5 3.7E-06 8E-11 105.0 20.0 113 769-883 259-390 (845)
160 KOG0920 ATP-dependent RNA heli 98.4 1.5E-05 3.2E-10 99.5 22.7 124 755-883 397-547 (924)
161 PRK15483 type III restriction- 98.4 4.6E-06 1E-10 104.7 16.6 165 397-566 8-239 (986)
162 PF02399 Herpes_ori_bp: Origin 98.3 7.5E-06 1.6E-10 100.2 16.3 104 762-874 275-384 (824)
163 KOG4150 Predicted ATP-dependen 98.3 6.2E-06 1.3E-10 94.9 13.8 131 752-886 508-646 (1034)
164 PF07652 Flavi_DEAD: Flaviviru 98.3 7.6E-06 1.6E-10 80.9 11.3 129 413-566 3-137 (148)
165 smart00489 DEXDc3 DEAD-like he 98.1 3.3E-05 7.1E-10 86.9 14.1 71 396-466 9-84 (289)
166 smart00488 DEXDc2 DEAD-like he 98.1 3.3E-05 7.1E-10 86.9 14.1 71 396-466 9-84 (289)
167 KOG0926 DEAH-box RNA helicase 98.1 2E-05 4.3E-10 94.3 12.5 57 820-879 629-703 (1172)
168 COG0653 SecA Preprotein transl 98.1 0.00025 5.5E-09 87.7 22.5 114 751-868 411-535 (822)
169 TIGR02562 cas3_yersinia CRISPR 98.0 0.0014 3.1E-08 82.8 27.4 47 821-870 838-884 (1110)
170 KOG0923 mRNA splicing factor A 98.0 0.00021 4.6E-09 84.5 17.9 109 768-883 472-609 (902)
171 PF13871 Helicase_C_4: Helicas 98.0 1.5E-05 3.3E-10 87.7 7.4 94 810-905 52-153 (278)
172 PF13086 AAA_11: AAA domain; P 97.9 0.00011 2.4E-09 78.9 13.2 66 396-465 2-75 (236)
173 PF02562 PhoH: PhoH-like prote 97.8 0.0001 2.2E-09 78.2 10.0 149 396-571 5-161 (205)
174 KOG0953 Mitochondrial RNA heli 97.8 6.4E-05 1.4E-09 87.3 8.5 101 767-870 356-466 (700)
175 PRK10536 hypothetical protein; 97.6 0.00034 7.4E-09 76.3 10.0 147 396-569 60-216 (262)
176 KOG0925 mRNA splicing factor A 97.5 0.0018 4E-08 74.3 14.7 108 771-884 255-391 (699)
177 COG3587 Restriction endonuclea 97.2 0.0017 3.7E-08 79.3 10.6 145 416-564 76-241 (985)
178 KOG0951 RNA helicase BRR2, DEA 97.1 0.038 8.2E-07 70.3 21.6 109 411-543 1156-1269(1674)
179 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.004 8.6E-08 68.8 11.2 132 392-539 74-209 (266)
180 KOG1803 DNA helicase [Replicat 97.0 0.0031 6.7E-08 74.8 10.6 66 392-462 182-248 (649)
181 PRK14873 primosome assembly pr 96.9 0.0056 1.2E-07 76.2 11.9 125 423-566 169-304 (665)
182 PF13604 AAA_30: AAA domain; P 96.9 0.017 3.6E-07 61.4 13.7 131 395-567 1-132 (196)
183 PF09848 DUF2075: Uncharacteri 96.8 0.0046 1E-07 71.7 9.8 49 417-465 4-53 (352)
184 KOG1802 RNA helicase nonsense 96.7 0.016 3.4E-07 69.2 12.6 68 395-467 410-478 (935)
185 TIGR01447 recD exodeoxyribonuc 96.6 0.014 3E-07 71.9 12.4 146 398-567 148-297 (586)
186 PF13307 Helicase_C_2: Helicas 96.6 0.0052 1.1E-07 63.5 7.1 77 768-850 8-92 (167)
187 KOG1131 RNA polymerase II tran 96.4 0.017 3.6E-07 67.3 10.3 62 394-455 15-77 (755)
188 TIGR01448 recD_rel helicase, p 96.3 0.029 6.3E-07 71.0 13.2 135 392-567 320-454 (720)
189 PRK11747 dinG ATP-dependent DN 96.3 0.04 8.7E-07 69.6 14.3 89 756-850 521-616 (697)
190 TIGR00376 DNA helicase, putati 96.3 0.048 1E-06 68.1 14.4 67 394-465 156-223 (637)
191 KOG1132 Helicase of the DEAD s 96.3 0.025 5.5E-07 69.8 11.4 46 388-433 14-59 (945)
192 COG0553 HepA Superfamily II DN 96.2 0.003 6.4E-08 81.9 3.3 185 393-587 82-289 (866)
193 PRK10875 recD exonuclease V su 96.1 0.044 9.5E-07 67.8 12.9 148 396-567 153-303 (615)
194 PF13401 AAA_22: AAA domain; P 96.1 0.011 2.4E-07 57.7 6.4 35 529-565 89-125 (131)
195 PF12340 DUF3638: Protein of u 96.1 0.02 4.3E-07 61.6 8.3 112 393-506 21-143 (229)
196 KOG1805 DNA replication helica 95.4 0.091 2E-06 65.7 11.5 155 386-567 656-831 (1100)
197 cd00009 AAA The AAA+ (ATPases 95.4 0.16 3.4E-06 49.6 11.1 56 402-459 5-62 (151)
198 PRK11747 dinG ATP-dependent DN 94.9 0.15 3.3E-06 64.4 12.0 62 394-456 24-90 (697)
199 KOG0952 DNA/RNA helicase MER3/ 94.5 0.04 8.7E-07 69.1 5.1 117 411-542 940-1061(1230)
200 COG1875 NYN ribonuclease and A 94.4 0.11 2.4E-06 58.8 7.8 56 397-454 230-286 (436)
201 smart00382 AAA ATPases associa 94.4 0.14 3.1E-06 49.3 7.8 46 414-461 2-47 (148)
202 PRK04296 thymidine kinase; Pro 94.3 0.063 1.4E-06 56.7 5.3 34 417-452 5-38 (190)
203 COG3421 Uncharacterized protei 94.2 0.046 1E-06 64.9 4.5 115 420-539 3-124 (812)
204 PLN03025 replication factor C 94.2 0.41 8.9E-06 54.8 12.3 41 400-440 18-60 (319)
205 TIGR03015 pepcterm_ATPase puta 94.1 0.26 5.7E-06 54.5 10.1 43 396-438 24-67 (269)
206 PRK12723 flagellar biosynthesi 93.9 0.46 1E-05 55.7 11.9 130 416-582 176-314 (388)
207 smart00492 HELICc3 helicase su 93.8 0.32 7E-06 48.8 9.1 54 795-850 24-79 (141)
208 PHA02533 17 large terminase pr 93.5 0.21 4.5E-06 61.0 8.5 55 394-452 58-112 (534)
209 PF05876 Terminase_GpA: Phage 93.4 0.13 2.8E-06 63.3 6.6 172 388-578 9-192 (557)
210 KOG0442 Structure-specific end 93.3 3.6 7.8E-05 51.5 18.2 183 396-602 14-203 (892)
211 TIGR02881 spore_V_K stage V sp 93.3 0.54 1.2E-05 52.2 10.7 25 416-440 44-68 (261)
212 PRK12402 replication factor C 93.1 0.3 6.6E-06 55.9 8.8 63 400-462 20-84 (337)
213 PRK05703 flhF flagellar biosyn 92.8 0.93 2E-05 54.0 12.3 55 528-582 300-359 (424)
214 smart00491 HELICc2 helicase su 92.3 0.5 1.1E-05 47.5 7.9 68 782-850 4-80 (142)
215 PF13245 AAA_19: Part of AAA d 92.3 0.32 7E-06 43.3 5.8 48 416-463 12-62 (76)
216 PF06862 DUF1253: Protein of u 92.3 1.6 3.4E-05 51.9 13.0 98 768-866 299-397 (442)
217 PRK09112 DNA polymerase III su 92.2 0.61 1.3E-05 54.1 9.7 42 400-441 28-72 (351)
218 PRK06526 transposase; Provisio 91.9 0.46 1E-05 52.5 7.8 52 403-464 91-142 (254)
219 PRK07003 DNA polymerase III su 91.9 0.95 2E-05 56.7 11.0 41 400-440 21-64 (830)
220 PRK14956 DNA polymerase III su 91.8 0.69 1.5E-05 55.4 9.6 43 399-441 22-67 (484)
221 PRK08769 DNA polymerase III su 91.7 1.4 3E-05 50.4 11.6 50 393-442 2-54 (319)
222 PF00448 SRP54: SRP54-type pro 91.7 0.52 1.1E-05 50.1 7.6 134 418-582 5-142 (196)
223 PRK05707 DNA polymerase III su 91.7 0.84 1.8E-05 52.5 9.9 48 395-442 3-50 (328)
224 PRK08116 hypothetical protein; 90.9 1.6 3.5E-05 48.7 10.9 47 414-462 114-160 (268)
225 TIGR02768 TraA_Ti Ti-type conj 90.7 1.7 3.8E-05 55.4 12.3 60 394-458 351-410 (744)
226 PRK14949 DNA polymerase III su 90.6 0.75 1.6E-05 58.6 8.7 42 400-441 21-65 (944)
227 PRK08181 transposase; Validate 90.6 2.1 4.6E-05 47.7 11.4 54 396-451 88-141 (269)
228 PRK11889 flhF flagellar biosyn 90.0 2.3 4.9E-05 49.8 11.2 128 417-582 244-379 (436)
229 TIGR02880 cbbX_cfxQ probable R 89.9 0.98 2.1E-05 50.8 8.2 28 415-442 59-86 (284)
230 TIGR03420 DnaA_homol_Hda DnaA 89.9 1.9 4.1E-05 46.3 10.2 40 400-439 22-63 (226)
231 PRK00149 dnaA chromosomal repl 89.9 1.6 3.5E-05 52.5 10.5 48 416-463 150-197 (450)
232 PRK14722 flhF flagellar biosyn 89.9 2.2 4.7E-05 49.8 11.1 41 414-454 137-177 (374)
233 TIGR00362 DnaA chromosomal rep 89.8 2 4.3E-05 50.9 11.0 44 416-459 138-181 (405)
234 PHA03372 DNA packaging termina 89.5 0.81 1.8E-05 55.5 7.3 146 418-584 206-367 (668)
235 CHL00181 cbbX CbbX; Provisiona 89.4 1.1 2.4E-05 50.4 8.1 42 417-458 62-105 (287)
236 PRK14974 cell division protein 89.1 2.8 6E-05 48.3 11.1 48 417-466 143-194 (336)
237 PRK12323 DNA polymerase III su 89.1 3.5 7.7E-05 51.1 12.4 42 400-441 21-65 (700)
238 PHA03368 DNA packaging termina 89.0 1.1 2.4E-05 55.1 8.0 148 415-585 255-421 (738)
239 PRK14087 dnaA chromosomal repl 88.8 1.9 4E-05 51.9 9.9 49 415-463 142-190 (450)
240 PRK14963 DNA polymerase III su 88.8 2.4 5.2E-05 51.6 10.9 43 400-442 19-64 (504)
241 PRK14961 DNA polymerase III su 88.1 2.9 6.2E-05 48.9 10.7 41 400-440 21-64 (363)
242 PRK06645 DNA polymerase III su 87.9 2.6 5.6E-05 51.3 10.3 42 400-441 26-70 (507)
243 KOG0989 Replication factor C, 87.8 2.2 4.8E-05 47.7 8.7 42 399-440 40-83 (346)
244 PRK13889 conjugal transfer rel 87.6 3.5 7.5E-05 53.9 11.8 128 394-568 345-473 (988)
245 TIGR00595 priA primosomal prot 87.5 2.9 6.3E-05 51.0 10.6 94 751-847 7-101 (505)
246 PRK08084 DNA replication initi 87.5 4.2 9.1E-05 44.4 10.8 40 400-439 29-70 (235)
247 PRK07993 DNA polymerase III su 87.3 3.8 8.2E-05 47.3 10.8 48 395-442 2-52 (334)
248 COG3267 ExeA Type II secretory 87.3 3.1 6.7E-05 45.5 9.3 71 391-465 28-105 (269)
249 PRK05580 primosome assembly pr 87.2 3.7 8E-05 52.0 11.6 95 751-848 172-267 (679)
250 PRK14948 DNA polymerase III su 87.1 3.4 7.4E-05 51.6 11.0 42 400-441 21-65 (620)
251 PRK07994 DNA polymerase III su 87.0 2.5 5.5E-05 52.7 9.7 42 400-441 21-65 (647)
252 PRK14960 DNA polymerase III su 86.9 4.2 9E-05 50.6 11.3 41 400-440 20-63 (702)
253 COG1484 DnaC DNA replication p 86.8 4.4 9.4E-05 44.9 10.5 52 411-464 102-153 (254)
254 PF13173 AAA_14: AAA domain 86.5 4.5 9.8E-05 39.5 9.5 38 528-566 62-99 (128)
255 PRK08451 DNA polymerase III su 86.4 4 8.8E-05 49.8 10.8 42 400-441 19-63 (535)
256 PRK14088 dnaA chromosomal repl 86.4 7.4 0.00016 46.7 13.0 41 416-456 132-172 (440)
257 PRK06871 DNA polymerase III su 86.3 4.4 9.6E-05 46.5 10.5 47 396-442 3-52 (325)
258 PRK14958 DNA polymerase III su 86.2 5.9 0.00013 48.4 12.2 42 400-441 21-65 (509)
259 PF00580 UvrD-helicase: UvrD/R 86.1 1.6 3.6E-05 48.9 7.0 64 396-465 1-67 (315)
260 PF13177 DNA_pol3_delta2: DNA 86.0 4.3 9.3E-05 41.6 9.4 47 400-446 2-51 (162)
261 PHA02544 44 clamp loader, smal 86.0 6.3 0.00014 44.8 11.7 40 528-567 101-142 (316)
262 TIGR02928 orc1/cdc6 family rep 85.9 3.3 7.2E-05 48.0 9.6 44 397-440 20-66 (365)
263 PRK06090 DNA polymerase III su 85.9 5.6 0.00012 45.5 11.1 48 395-442 3-53 (319)
264 cd01120 RecA-like_NTPases RecA 85.7 6.2 0.00013 39.2 10.4 33 418-452 3-35 (165)
265 PRK08691 DNA polymerase III su 85.7 4.6 9.9E-05 50.6 10.8 42 400-441 21-65 (709)
266 PRK08727 hypothetical protein; 85.5 3.8 8.3E-05 44.7 9.2 33 416-450 43-75 (233)
267 COG4626 Phage terminase-like p 85.3 9.7 0.00021 46.1 12.9 183 390-591 56-253 (546)
268 PRK14962 DNA polymerase III su 85.2 4.4 9.5E-05 49.0 10.3 24 417-440 39-62 (472)
269 PRK07764 DNA polymerase III su 85.2 5.9 0.00013 51.0 12.0 25 417-441 40-64 (824)
270 PRK09111 DNA polymerase III su 85.2 3.3 7.1E-05 51.5 9.4 42 400-441 29-73 (598)
271 PRK14952 DNA polymerase III su 85.1 6.3 0.00014 48.8 11.7 42 400-441 18-62 (584)
272 PRK07940 DNA polymerase III su 84.8 5.1 0.00011 47.3 10.4 26 416-441 38-63 (394)
273 COG1198 PriA Primosomal protei 84.6 2 4.3E-05 54.1 7.2 76 751-827 227-303 (730)
274 PRK00440 rfc replication facto 84.4 11 0.00023 42.7 12.7 40 400-439 22-63 (319)
275 PRK14964 DNA polymerase III su 84.4 6.9 0.00015 47.4 11.4 41 400-440 18-61 (491)
276 PRK10416 signal recognition pa 83.9 9 0.00019 43.9 11.6 33 418-452 118-150 (318)
277 PRK10917 ATP-dependent DNA hel 83.8 5.1 0.00011 50.8 10.5 100 749-849 290-393 (681)
278 PRK14086 dnaA chromosomal repl 83.8 7.2 0.00016 48.3 11.3 48 416-463 316-363 (617)
279 COG1419 FlhF Flagellar GTP-bin 83.7 7.9 0.00017 45.3 11.0 134 415-583 204-341 (407)
280 PRK12727 flagellar biosynthesi 83.7 13 0.00028 45.3 13.2 35 417-451 353-387 (559)
281 PRK00771 signal recognition pa 83.6 8.4 0.00018 46.1 11.6 35 416-452 97-131 (437)
282 PRK13826 Dtr system oriT relax 83.6 8.7 0.00019 50.8 12.6 59 394-457 380-438 (1102)
283 COG0552 FtsY Signal recognitio 83.3 8 0.00017 44.0 10.5 126 418-574 143-278 (340)
284 PRK07471 DNA polymerase III su 83.3 5.9 0.00013 46.3 10.0 43 400-442 24-69 (365)
285 PRK06964 DNA polymerase III su 83.2 8.1 0.00018 44.7 10.9 47 396-442 2-49 (342)
286 COG1702 PhoH Phosphate starvat 83.0 2.3 5.1E-05 48.3 6.2 52 396-452 129-181 (348)
287 PRK14951 DNA polymerase III su 82.8 5.2 0.00011 49.8 9.7 42 400-441 21-65 (618)
288 PRK14955 DNA polymerase III su 82.1 10 0.00022 44.9 11.5 42 400-441 21-65 (397)
289 PRK14969 DNA polymerase III su 82.0 8.3 0.00018 47.4 11.0 41 400-440 21-64 (527)
290 PRK14957 DNA polymerase III su 81.7 8.9 0.00019 47.1 11.0 41 400-440 21-64 (546)
291 PRK12422 chromosomal replicati 81.3 6 0.00013 47.5 9.2 41 415-457 142-182 (445)
292 PRK08058 DNA polymerase III su 80.5 9.3 0.0002 44.0 10.2 44 399-442 10-56 (329)
293 PF06733 DEAD_2: DEAD_2; Inte 80.5 1.2 2.6E-05 46.1 2.7 43 490-540 116-158 (174)
294 cd01124 KaiC KaiC is a circadi 80.5 4.2 9.1E-05 42.1 6.8 49 417-467 2-50 (187)
295 PF05127 Helicase_RecD: Helica 80.4 1.5 3.3E-05 45.7 3.4 137 419-597 2-139 (177)
296 PRK14873 primosome assembly pr 80.4 6.2 0.00013 49.7 9.3 78 751-830 170-249 (665)
297 cd00984 DnaB_C DnaB helicase C 80.3 6.5 0.00014 42.7 8.5 39 413-452 12-50 (242)
298 cd01122 GP4d_helicase GP4d_hel 79.8 8.9 0.00019 42.5 9.6 50 413-463 29-78 (271)
299 PRK06893 DNA replication initi 79.8 13 0.00028 40.4 10.6 25 417-441 42-66 (229)
300 TIGR00643 recG ATP-dependent D 79.6 8.2 0.00018 48.6 10.1 100 749-849 264-367 (630)
301 PRK04132 replication factor C 79.6 5.6 0.00012 51.1 8.6 46 528-573 631-677 (846)
302 COG0470 HolB ATPase involved i 79.3 8.7 0.00019 43.5 9.5 27 417-443 27-53 (325)
303 PRK05563 DNA polymerase III su 79.3 14 0.0003 45.8 11.8 25 417-441 41-65 (559)
304 PF05621 TniB: Bacterial TniB 79.1 7.6 0.00017 43.8 8.5 40 397-436 39-83 (302)
305 PRK14950 DNA polymerase III su 79.1 8.3 0.00018 48.1 9.9 41 400-440 21-64 (585)
306 PRK07133 DNA polymerase III su 79.1 8.2 0.00018 48.8 9.7 65 907-973 561-631 (725)
307 PF01695 IstB_IS21: IstB-like 78.9 2 4.4E-05 44.8 3.8 47 412-464 45-91 (178)
308 PF00308 Bac_DnaA: Bacterial d 78.2 14 0.00031 39.9 10.1 37 417-453 37-73 (219)
309 PRK06995 flhF flagellar biosyn 78.1 12 0.00027 45.1 10.5 52 528-580 335-391 (484)
310 PRK14721 flhF flagellar biosyn 78.0 14 0.00031 43.8 10.8 54 528-582 270-328 (420)
311 PRK14712 conjugal transfer nic 77.4 14 0.00031 50.6 11.7 64 391-456 831-896 (1623)
312 TIGR02782 TrbB_P P-type conjug 77.2 4.7 0.0001 45.8 6.4 46 405-450 123-168 (299)
313 TIGR03345 VI_ClpV1 type VI sec 76.9 12 0.00025 48.8 10.5 39 400-438 192-232 (852)
314 PRK14959 DNA polymerase III su 76.7 12 0.00027 46.5 10.1 41 400-440 21-64 (624)
315 PRK05896 DNA polymerase III su 76.5 18 0.00038 44.9 11.3 43 400-442 21-66 (605)
316 KOG0991 Replication factor C, 76.3 12 0.00026 40.5 8.4 26 415-440 49-74 (333)
317 PTZ00112 origin recognition co 76.2 15 0.00032 47.2 10.5 43 397-439 760-806 (1164)
318 KOG1832 HIV-1 Vpr-binding prot 76.1 3.1 6.8E-05 51.8 4.7 6 134-139 1286-1291(1516)
319 PRK07952 DNA replication prote 75.8 7.8 0.00017 42.6 7.4 61 398-464 79-143 (244)
320 TIGR03499 FlhF flagellar biosy 75.4 9 0.0002 43.1 8.0 36 417-452 197-232 (282)
321 PRK00411 cdc6 cell division co 75.3 27 0.00058 41.0 12.3 28 415-442 56-83 (394)
322 TIGR00708 cobA cob(I)alamin ad 75.3 7 0.00015 40.6 6.4 53 525-580 95-151 (173)
323 PRK13833 conjugal transfer pro 74.9 5.8 0.00013 45.5 6.3 52 396-450 129-180 (323)
324 TIGR03346 chaperone_ClpB ATP-d 74.7 9.2 0.0002 49.9 8.9 38 402-439 180-219 (852)
325 KOG0921 Dosage compensation co 74.6 12 0.00027 47.2 9.1 137 407-565 386-535 (1282)
326 KOG1133 Helicase of the DEAD s 74.4 4.7 0.0001 49.5 5.5 45 393-437 13-57 (821)
327 PRK08699 DNA polymerase III su 74.3 19 0.00041 41.4 10.3 46 396-441 2-48 (325)
328 PRK05642 DNA replication initi 74.1 13 0.00029 40.5 8.7 37 528-564 98-138 (234)
329 PRK13709 conjugal transfer nic 73.9 22 0.00048 49.4 12.2 65 390-456 962-1028(1747)
330 PF01443 Viral_helicase1: Vira 73.7 4.6 0.0001 43.5 5.0 40 527-569 62-101 (234)
331 PRK04195 replication factor C 73.7 13 0.00029 45.1 9.4 25 414-438 39-63 (482)
332 PRK11054 helD DNA helicase IV; 73.6 6.7 0.00014 49.7 7.0 66 394-465 195-263 (684)
333 TIGR02640 gas_vesic_GvpN gas v 73.5 7.2 0.00016 43.3 6.5 49 398-451 5-53 (262)
334 PHA03333 putative ATPase subun 73.3 41 0.00089 42.2 13.1 63 399-463 173-236 (752)
335 PRK09165 replicative DNA helic 73.1 20 0.00044 43.7 10.7 59 405-463 208-279 (497)
336 PRK14953 DNA polymerase III su 72.8 23 0.0005 43.1 11.0 41 400-440 21-64 (486)
337 PF06745 KaiC: KaiC; InterPro 72.7 8.3 0.00018 41.5 6.7 53 415-468 20-72 (226)
338 PRK06731 flhF flagellar biosyn 72.4 47 0.001 37.2 12.6 131 414-582 75-213 (270)
339 KOG0740 AAA+-type ATPase [Post 72.3 6.1 0.00013 46.6 5.7 47 414-465 186-232 (428)
340 PF00004 AAA: ATPase family as 71.7 15 0.00033 35.2 7.7 36 418-458 2-37 (132)
341 COG1435 Tdk Thymidine kinase [ 71.6 21 0.00045 37.8 8.8 34 528-564 83-118 (201)
342 COG3973 Superfamily I DNA and 71.4 12 0.00027 45.5 8.0 47 415-461 227-277 (747)
343 PRK14965 DNA polymerase III su 71.4 22 0.00048 44.2 10.7 42 400-441 21-65 (576)
344 PF03354 Terminase_1: Phage Te 71.2 12 0.00027 45.3 8.3 55 398-452 1-62 (477)
345 PRK06647 DNA polymerase III su 71.2 18 0.0004 44.7 9.8 42 400-441 21-65 (563)
346 TIGR00580 mfd transcription-re 71.2 17 0.00037 47.7 9.9 96 750-846 481-580 (926)
347 PRK08760 replicative DNA helic 71.0 25 0.00054 42.7 10.8 59 407-466 222-280 (476)
348 PRK05986 cob(I)alamin adenolsy 70.9 56 0.0012 34.6 12.0 54 525-578 113-170 (191)
349 PRK13342 recombination factor 70.5 18 0.00039 43.0 9.4 23 415-437 37-59 (413)
350 CHL00095 clpC Clp protease ATP 70.4 20 0.00043 46.7 10.4 26 414-439 200-225 (821)
351 PRK06835 DNA replication prote 70.2 9.6 0.00021 43.9 6.7 59 395-455 160-222 (329)
352 PRK00080 ruvB Holliday junctio 69.8 20 0.00043 41.1 9.3 24 415-438 52-75 (328)
353 PF02456 Adeno_IVa2: Adenoviru 69.6 8.2 0.00018 43.4 5.6 123 416-554 89-223 (369)
354 PRK10689 transcription-repair 69.5 63 0.0014 43.6 14.8 97 748-845 628-728 (1147)
355 PRK14954 DNA polymerase III su 69.3 18 0.00039 45.3 9.2 42 400-441 21-65 (620)
356 PRK13894 conjugal transfer ATP 69.2 9.2 0.0002 43.9 6.2 54 396-452 133-186 (319)
357 TIGR02397 dnaX_nterm DNA polym 68.6 31 0.00067 39.7 10.7 42 400-441 19-63 (355)
358 PRK08939 primosomal protein Dn 68.5 14 0.0003 42.1 7.5 43 414-458 156-198 (306)
359 TIGR02760 TraI_TIGR conjugativ 68.1 50 0.0011 47.1 14.0 61 394-458 428-488 (1960)
360 PRK10865 protein disaggregatio 68.0 16 0.00034 47.7 8.7 37 403-439 186-224 (857)
361 COG0464 SpoVK ATPases of the A 67.2 7.5 0.00016 47.4 5.4 65 396-465 250-322 (494)
362 KOG0744 AAA+-type ATPase [Post 67.0 25 0.00054 39.9 8.6 76 390-465 148-232 (423)
363 PRK14723 flhF flagellar biosyn 66.7 28 0.00061 44.4 10.2 46 418-463 189-238 (767)
364 TIGR01547 phage_term_2 phage t 65.8 11 0.00023 44.6 6.1 46 418-463 5-53 (396)
365 TIGR02760 TraI_TIGR conjugativ 65.1 37 0.0008 48.3 11.9 62 393-456 1017-1080(1960)
366 PRK06904 replicative DNA helic 65.0 62 0.0013 39.3 12.5 60 404-464 211-270 (472)
367 TIGR01425 SRP54_euk signal rec 64.8 62 0.0014 38.6 12.1 33 418-452 104-136 (429)
368 PRK12726 flagellar biosynthesi 64.8 22 0.00047 41.8 8.0 48 416-465 208-259 (407)
369 TIGR00064 ftsY signal recognit 64.5 30 0.00065 38.7 9.0 33 418-452 76-108 (272)
370 COG2256 MGS1 ATPase related to 64.0 26 0.00056 41.0 8.3 20 415-434 49-68 (436)
371 PRK05973 replicative DNA helic 63.9 17 0.00037 39.8 6.7 54 411-466 61-114 (237)
372 TIGR00665 DnaB replicative DNA 63.8 53 0.0012 39.3 11.6 50 412-462 193-242 (434)
373 PRK10867 signal recognition pa 63.8 27 0.00059 41.7 9.0 46 417-463 103-152 (433)
374 TIGR00678 holB DNA polymerase 63.7 54 0.0012 34.1 10.4 26 416-441 16-41 (188)
375 PRK10919 ATP-dependent DNA hel 63.5 13 0.00028 47.2 6.5 65 396-466 3-70 (672)
376 PF03237 Terminase_6: Terminas 63.4 32 0.00069 39.3 9.4 35 418-452 1-35 (384)
377 PRK06305 DNA polymerase III su 63.2 32 0.00069 41.5 9.5 42 400-441 22-66 (451)
378 PF00437 T2SE: Type II/IV secr 63.0 11 0.00023 42.0 5.1 45 405-451 118-162 (270)
379 PRK12724 flagellar biosynthesi 62.8 44 0.00096 39.7 10.2 55 527-582 299-361 (432)
380 PRK13341 recombination factor 62.7 30 0.00066 44.2 9.6 23 415-437 53-75 (725)
381 TIGR03877 thermo_KaiC_1 KaiC d 62.6 19 0.00041 39.2 6.9 51 414-466 21-71 (237)
382 TIGR01075 uvrD DNA helicase II 62.4 15 0.00034 46.9 7.1 66 395-466 4-72 (715)
383 cd03115 SRP The signal recogni 62.1 54 0.0012 33.5 9.9 32 418-451 4-35 (173)
384 PF05970 PIF1: PIF1-like helic 61.8 25 0.00055 41.0 8.2 60 396-457 2-63 (364)
385 cd01129 PulE-GspE PulE/GspE Th 61.5 18 0.00039 40.3 6.6 42 396-439 64-105 (264)
386 COG3972 Superfamily I DNA and 61.1 15 0.00033 43.7 5.9 39 423-461 185-224 (660)
387 PRK08506 replicative DNA helic 61.0 55 0.0012 39.7 11.1 58 404-463 182-239 (472)
388 PRK07399 DNA polymerase III su 61.0 58 0.0013 37.3 10.7 43 400-442 9-54 (314)
389 TIGR02655 circ_KaiC circadian 61.0 41 0.00088 41.0 10.0 65 401-467 249-314 (484)
390 PRK11773 uvrD DNA-dependent he 60.9 18 0.00038 46.4 7.2 67 394-466 8-77 (721)
391 cd00561 CobA_CobO_BtuR ATP:cor 60.7 60 0.0013 33.3 9.6 49 525-573 93-145 (159)
392 CHL00176 ftsH cell division pr 60.7 30 0.00066 43.5 9.0 24 414-437 216-239 (638)
393 PRK12377 putative replication 60.6 25 0.00055 38.8 7.4 45 415-461 102-146 (248)
394 KOG0780 Signal recognition par 60.5 18 0.00039 41.9 6.2 57 418-476 105-161 (483)
395 COG0467 RAD55 RecA-superfamily 60.0 22 0.00049 39.2 7.0 52 413-466 22-73 (260)
396 PRK06921 hypothetical protein; 59.6 28 0.00061 38.8 7.7 42 414-456 117-158 (266)
397 PRK14970 DNA polymerase III su 59.4 56 0.0012 38.1 10.5 40 400-439 22-64 (367)
398 PRK08840 replicative DNA helic 59.4 80 0.0017 38.2 12.0 56 407-463 210-265 (464)
399 TIGR03880 KaiC_arch_3 KaiC dom 59.3 25 0.00053 37.9 7.0 50 416-467 18-67 (224)
400 PRK14971 DNA polymerase III su 58.8 1.2E+02 0.0027 38.0 13.8 41 400-440 22-65 (614)
401 PRK05748 replicative DNA helic 58.0 76 0.0017 38.2 11.6 61 402-463 191-251 (448)
402 TIGR00767 rho transcription te 57.9 46 0.00099 39.3 9.2 27 412-438 166-192 (415)
403 PRK11034 clpA ATP-dependent Cl 57.8 29 0.00063 44.6 8.2 25 414-438 207-231 (758)
404 KOG1133 Helicase of the DEAD s 56.8 74 0.0016 39.7 10.8 75 772-851 632-721 (821)
405 PF06068 TIP49: TIP49 C-termin 56.7 22 0.00048 41.3 6.2 53 399-454 31-87 (398)
406 TIGR01074 rep ATP-dependent DN 56.7 21 0.00045 45.3 6.8 65 396-466 2-69 (664)
407 TIGR03881 KaiC_arch_4 KaiC dom 56.4 29 0.00062 37.4 7.0 50 414-465 20-69 (229)
408 PHA02542 41 41 helicase; Provi 56.3 56 0.0012 39.6 10.0 48 414-463 190-237 (473)
409 TIGR03600 phage_DnaB phage rep 55.7 33 0.00071 40.9 7.9 57 404-461 184-240 (421)
410 PRK11331 5-methylcytosine-spec 55.3 24 0.00053 42.2 6.5 36 404-439 184-219 (459)
411 COG1200 RecG RecG-like helicas 55.3 4.7E+02 0.01 33.0 17.3 95 749-845 291-390 (677)
412 PRK08533 flagellar accessory p 55.1 31 0.00067 37.6 6.9 43 414-458 24-66 (230)
413 PF04364 DNA_pol3_chi: DNA pol 54.8 44 0.00095 33.3 7.4 79 755-850 15-97 (137)
414 PRK13900 type IV secretion sys 54.7 23 0.0005 40.9 6.1 35 404-438 150-184 (332)
415 PRK06067 flagellar accessory p 53.6 32 0.0007 37.2 6.8 51 415-467 26-76 (234)
416 PRK09183 transposase/IS protei 53.4 19 0.0004 40.1 4.9 43 413-457 101-143 (259)
417 PRK07276 DNA polymerase III su 52.7 88 0.0019 35.4 10.2 46 396-442 3-50 (290)
418 TIGR01054 rgy reverse gyrase. 52.6 53 0.0011 44.4 9.7 81 747-828 99-186 (1171)
419 KOG0737 AAA+-type ATPase [Post 52.5 14 0.00029 42.7 3.6 52 410-466 123-174 (386)
420 COG2812 DnaX DNA polymerase II 52.4 41 0.00088 41.0 7.9 42 400-441 21-65 (515)
421 PHA00012 I assembly protein 52.3 34 0.00074 39.2 6.6 34 418-455 5-38 (361)
422 COG0541 Ffh Signal recognition 52.1 37 0.00081 40.1 7.1 59 417-477 103-161 (451)
423 PRK14701 reverse gyrase; Provi 52.0 65 0.0014 45.0 10.5 81 747-828 100-186 (1638)
424 PRK06620 hypothetical protein; 51.6 90 0.0019 33.6 9.7 101 447-565 17-122 (214)
425 PRK04328 hypothetical protein; 51.2 38 0.00083 37.3 6.9 51 414-466 23-73 (249)
426 KOG0738 AAA+-type ATPase [Post 51.0 16 0.00035 42.3 3.9 45 415-465 246-291 (491)
427 PRK05564 DNA polymerase III su 50.7 81 0.0018 35.9 9.8 24 418-441 30-53 (313)
428 PF12846 AAA_10: AAA-like doma 50.6 28 0.0006 38.7 5.9 43 415-459 2-44 (304)
429 KOG1807 Helicases [Replication 50.4 36 0.00077 42.7 6.8 67 395-465 378-449 (1025)
430 cd01121 Sms Sms (bacterial rad 49.9 90 0.002 36.7 10.0 51 415-467 83-133 (372)
431 TIGR01073 pcrA ATP-dependent D 49.9 35 0.00076 43.7 7.3 53 395-453 4-58 (726)
432 PRK08006 replicative DNA helic 49.6 1.4E+02 0.0031 36.2 12.0 58 406-464 216-273 (471)
433 KOG1806 DEAD box containing he 49.6 32 0.00068 44.4 6.4 67 395-465 738-805 (1320)
434 PRK05636 replicative DNA helic 49.6 77 0.0017 38.8 9.7 49 413-462 264-312 (505)
435 TIGR00365 monothiol glutaredox 49.3 74 0.0016 29.6 7.6 58 769-827 11-74 (97)
436 TIGR03878 thermo_KaiC_2 KaiC d 48.6 42 0.00091 37.2 6.8 35 416-452 38-72 (259)
437 TIGR00959 ffh signal recogniti 48.5 51 0.0011 39.4 7.8 35 417-452 102-136 (428)
438 TIGR02525 plasmid_TraJ plasmid 48.0 31 0.00068 40.4 5.8 36 414-449 149-184 (372)
439 PF13481 AAA_25: AAA domain; P 47.5 44 0.00096 34.6 6.5 54 414-467 32-93 (193)
440 PRK07004 replicative DNA helic 47.4 97 0.0021 37.5 10.1 52 411-463 210-261 (460)
441 PRK13851 type IV secretion sys 46.0 26 0.00057 40.6 4.8 34 405-438 153-186 (344)
442 TIGR02533 type_II_gspE general 45.9 33 0.00072 41.7 5.9 41 395-438 225-266 (486)
443 TIGR00614 recQ_fam ATP-depende 45.8 3.4E+02 0.0073 32.9 14.5 97 748-849 33-137 (470)
444 cd01125 repA Hexameric Replica 45.4 28 0.0006 38.0 4.7 37 416-452 3-49 (239)
445 cd01130 VirB11-like_ATPase Typ 44.9 41 0.00089 35.1 5.7 38 396-436 10-47 (186)
446 COG1224 TIP49 DNA helicase TIP 44.9 28 0.00061 40.1 4.6 26 413-438 64-89 (450)
447 TIGR00764 lon_rel lon-related 44.7 47 0.001 41.6 7.0 54 385-439 9-62 (608)
448 PTZ00293 thymidine kinase; Pro 43.8 30 0.00065 37.2 4.5 35 418-454 8-42 (211)
449 COG0630 VirB11 Type IV secreto 43.7 39 0.00084 38.7 5.7 41 395-438 127-167 (312)
450 PF10593 Z1: Z1 domain; Inter 43.7 67 0.0014 35.3 7.3 92 776-874 94-189 (239)
451 COG4962 CpaF Flp pilus assembl 43.6 32 0.00069 39.5 4.8 34 403-436 162-195 (355)
452 PRK07773 replicative DNA helic 43.6 79 0.0017 41.6 9.2 62 402-464 205-266 (886)
453 TIGR00416 sms DNA repair prote 43.5 96 0.0021 37.5 9.2 50 416-467 96-145 (454)
454 COG2804 PulE Type II secretory 43.4 37 0.0008 40.9 5.5 43 396-441 242-285 (500)
455 PRK11823 DNA repair protein Ra 43.4 1.2E+02 0.0026 36.6 9.9 64 402-467 67-131 (446)
456 smart00763 AAA_PrkA PrkA AAA d 43.3 55 0.0012 38.1 6.8 43 398-440 58-104 (361)
457 COG1474 CDC6 Cdc6-related prot 43.2 2.8E+02 0.0061 32.5 12.8 46 396-441 21-69 (366)
458 PRK06321 replicative DNA helic 42.5 1.6E+02 0.0034 35.8 10.8 59 404-463 216-274 (472)
459 TIGR00347 bioD dethiobiotin sy 42.4 30 0.00066 35.1 4.2 33 418-452 2-34 (166)
460 COG2909 MalT ATP-dependent tra 42.0 1.9E+02 0.0042 37.1 11.5 33 529-561 131-165 (894)
461 cd03028 GRX_PICOT_like Glutare 41.9 88 0.0019 28.5 6.7 59 768-827 6-70 (90)
462 TIGR02538 type_IV_pilB type IV 41.9 1.3E+02 0.0027 37.6 10.1 41 395-438 299-340 (564)
463 PRK03992 proteasome-activating 41.7 35 0.00076 40.3 5.1 41 414-459 165-205 (389)
464 PTZ00454 26S protease regulato 41.5 32 0.0007 40.7 4.7 43 413-460 178-220 (398)
465 PF13607 Succ_CoA_lig: Succiny 41.4 1.2E+02 0.0026 30.4 8.1 86 771-877 3-90 (138)
466 PRK13531 regulatory ATPase Rav 41.4 35 0.00076 41.3 4.9 39 400-438 25-63 (498)
467 KOG0651 26S proteasome regulat 41.3 30 0.00065 39.1 4.0 42 413-459 165-206 (388)
468 TIGR01281 DPOR_bchL light-inde 41.3 24 0.00051 39.1 3.4 27 422-450 8-34 (268)
469 PRK13235 nifH nitrogenase redu 41.1 24 0.00052 39.3 3.5 27 422-450 9-35 (274)
470 cd03418 GRX_GRXb_1_3_like Glut 40.7 1.2E+02 0.0026 26.0 7.2 57 771-827 1-58 (75)
471 PHA00673 acetyltransferase dom 40.5 34 0.00074 34.9 4.0 45 527-571 87-134 (154)
472 KOG2340 Uncharacterized conser 40.5 1.1E+02 0.0023 37.1 8.5 95 771-866 554-649 (698)
473 PRK10824 glutaredoxin-4; Provi 40.4 94 0.002 30.2 6.9 63 769-832 14-83 (115)
474 TIGR02785 addA_Gpos recombinat 40.2 62 0.0014 44.1 7.7 60 396-461 2-62 (1232)
475 PF04665 Pox_A32: Poxvirus A32 40.1 40 0.00086 37.1 4.8 37 414-452 13-49 (241)
476 PF02606 LpxK: Tetraacyldisacc 39.8 92 0.002 35.9 7.9 123 424-568 47-191 (326)
477 PF07015 VirC1: VirC1 protein; 39.5 1.2E+02 0.0026 33.2 8.2 41 423-465 11-53 (231)
478 KOG1942 DNA helicase, TBP-inte 39.2 46 0.001 37.2 5.0 27 412-438 62-88 (456)
479 COG2805 PilT Tfp pilus assembl 38.8 1.2E+02 0.0026 34.5 8.1 28 412-439 122-150 (353)
480 KOG2028 ATPase related to the 38.7 62 0.0013 37.4 6.0 36 529-566 224-259 (554)
481 TIGR01242 26Sp45 26S proteasom 38.6 64 0.0014 37.6 6.6 25 414-438 156-180 (364)
482 cd00268 DEADc DEAD-box helicas 38.6 4.6E+02 0.01 27.1 12.7 94 751-849 46-153 (203)
483 PF02572 CobA_CobO_BtuR: ATP:c 38.5 79 0.0017 32.9 6.5 53 525-580 94-150 (172)
484 TIGR02655 circ_KaiC circadian 38.5 64 0.0014 39.3 6.7 54 414-468 21-74 (484)
485 PF01935 DUF87: Domain of unkn 38.4 44 0.00094 36.0 4.8 37 415-452 24-60 (229)
486 cd02037 MRP-like MRP (Multiple 38.4 38 0.00083 34.6 4.2 51 527-581 67-117 (169)
487 PRK13230 nitrogenase reductase 38.3 28 0.0006 38.9 3.4 28 421-450 8-35 (279)
488 PRK13766 Hef nuclease; Provisi 38.3 4.1E+02 0.0089 34.3 14.5 114 750-869 38-162 (773)
489 PLN00020 ribulose bisphosphate 38.2 25 0.00055 40.9 3.0 47 413-464 147-193 (413)
490 PRK10436 hypothetical protein; 38.0 47 0.001 40.1 5.4 40 396-438 202-242 (462)
491 COG1110 Reverse gyrase [DNA re 38.0 1.5E+02 0.0033 38.8 9.8 88 744-832 100-193 (1187)
492 PRK06646 DNA polymerase III su 38.0 48 0.001 33.8 4.7 42 751-792 11-52 (154)
493 PRK13185 chlL protochlorophyll 37.2 30 0.00065 38.3 3.5 28 421-450 9-36 (270)
494 TIGR02688 conserved hypothetic 37.0 84 0.0018 37.5 7.0 56 401-461 196-252 (449)
495 PRK08903 DnaA regulatory inact 37.0 82 0.0018 33.8 6.7 37 414-452 42-78 (227)
496 cd02117 NifH_like This family 36.8 32 0.0007 36.7 3.5 27 422-450 8-34 (212)
497 PRK05728 DNA polymerase III su 36.6 51 0.0011 33.1 4.6 111 751-893 11-125 (142)
498 cd01983 Fer4_NifH The Fer4_Nif 36.0 59 0.0013 28.8 4.6 31 419-451 4-34 (99)
499 CHL00072 chlL photochlorophyll 36.0 32 0.0007 38.8 3.5 27 422-450 8-34 (290)
500 PRK09302 circadian clock prote 36.0 79 0.0017 38.7 7.1 49 417-467 276-324 (509)
No 1
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.1e-118 Score=1029.40 Aligned_cols=638 Identities=41% Similarity=0.656 Sum_probs=570.0
Q ss_pred ccCCCccccCCCcccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEE
Q 001524 372 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVV 450 (1060)
Q Consensus 372 ~~~~~~~l~~~~~~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV 450 (1060)
.....+........|.+|+.++..|+|||++||+|||++++.+.||||||+||||||+|+|+|++++++. ...+|+|||
T Consensus 182 ~~~~~~~~~~~~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIV 261 (923)
T KOG0387|consen 182 EDHSEISGKKLEGGFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIV 261 (923)
T ss_pred ccccccccccccccccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEE
Confidence 3444555556666799999999999999999999999999999999999999999999999999999988 677999999
Q ss_pred eCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHH-----------HHHhhhCCCEEEeeHHHHHhccccccCCCcccC
Q 001524 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-----------LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISD 519 (1060)
Q Consensus 451 ~P~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~-----------~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~ 519 (1060)
||++++.||++||.+|+|..++.++|+++...+... .......++|+||||+.++.....+
T Consensus 262 CP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l-------- 333 (923)
T KOG0387|consen 262 CPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDL-------- 333 (923)
T ss_pred ccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccc--------
Confidence 999999999999999999999999999876422110 1112335679999999998765443
Q ss_pred cCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhccc
Q 001524 520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI 599 (1060)
Q Consensus 520 ~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi 599 (1060)
....|+|+|+||+|+|||++|+++.+|+.+++.+||+||||||||++.|||+|++|+.|+.+|+...|.+.|..||
T Consensus 334 ----~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI 409 (923)
T KOG0387|consen 334 ----LGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPI 409 (923)
T ss_pred ----ccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhhe
Confidence 4677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHH
Q 001524 600 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679 (1060)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~ 679 (1060)
..|.+.++++.+...+..++..|+.+|+||+|||+|.+|.. ..||.|.++++||.||+.|+++|+.|+++..+
T Consensus 410 ~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-------~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v 482 (923)
T KOG0387|consen 410 NRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-------LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV 482 (923)
T ss_pred eccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-------ccCCCccceEEEEeccHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999954 36999999999999999999999999999999
Q ss_pred hhhcCCCh--HHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHH
Q 001524 680 LSAFDGSP--LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISF 757 (1060)
Q Consensus 680 ~~~~~~~~--l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~ 757 (1060)
...+++.. +..+..||+|||||.++..... ....+.+ + +..+..|+|+..
T Consensus 483 ~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~-~~~~~~D--------------------------~-~g~~k~sGKm~v 534 (923)
T KOG0387|consen 483 NKILNGKRNCLSGIDILRKICNHPDLLDRRDE-DEKQGPD--------------------------Y-EGDPKRSGKMKV 534 (923)
T ss_pred HHHHcCCccceechHHHHhhcCCcccccCccc-ccccCCC--------------------------c-CCChhhcchHHH
Confidence 98888876 8999999999999999876431 0000000 0 023346999999
Q ss_pred HHHHHHhhccCCCceEEEeccHHHHHHHHHHHh-hcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccC
Q 001524 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG-SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLT 836 (1060)
Q Consensus 758 L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~-~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLN 836 (1060)
+..+|..|+..|+|||+|+|.+.||++|+.+|. ..||.|+|+||.++.+.|+.+|++||+++..+|||+||+|||+|||
T Consensus 535 l~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlN 614 (923)
T KOG0387|consen 535 LAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLN 614 (923)
T ss_pred HHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccc
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred cccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHHHHH
Q 001524 837 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 916 (1060)
Q Consensus 837 Lt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~~r~fs~~eL~ 916 (1060)
||+||+||||||.|||+++.||..|||||||+++|.||||++.|||||+||.+|++|+.|.+.++.++++.|||...+|.
T Consensus 615 LTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~ 694 (923)
T KOG0387|consen 615 LTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLH 694 (923)
T ss_pred cccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCchhhHHHHHhhhcCCCCCChHHHHHHHHhhhcCccccccCcccccchhhhhccchHHHH-HhccCcccc
Q 001524 917 ELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEA-TRRKGTAFV 995 (1060)
Q Consensus 917 eLf~~~~~~~~~s~tq~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~g~~~h~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 995 (1060)
+||++...|.+...|+....+.|.. ...+.....+++|.+...+.++++|..+|+.-.+....++.++. .+.....++
T Consensus 695 dLFsl~~~G~~~~~te~~~~~~~~~-~~~~lk~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~il 773 (923)
T KOG0387|consen 695 DLFSLKDFGDDGESTETSSKEVHRN-EKVNLKRNSSIDFEEKEDLLALSKHSELSSSVSNGSSEEEVEEAKDREMIKPIL 773 (923)
T ss_pred HHhCCCCCCcCcchhhhhhhhhhhh-HHHHHhhcccccchhhhhhhhhccccccccccCchHHHHHHHHHhhhhhhhhhh
Confidence 9999999999999999888777765 34445566788899999999999999999887777777664443 334455789
Q ss_pred cCCCCcccccccCCCcccccCccccccccc-CCCCcchhhhchhHHHHHHHHHHHHhhccccc
Q 001524 996 GNSSSSYLVARNVDGAEYAFNPRDIKLNKK-SSSPKNEAKLKESDIKERIKRLSQLISNKAWL 1057 (1060)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1060)
|+-+.++.+.+...++.++++++...+.++ +.++++.+.+.........++++..+++..+|
T Consensus 774 g~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~ 836 (923)
T KOG0387|consen 774 GSLSDSVVNNHRNEEEKNIIETEASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKV 836 (923)
T ss_pred ccchhhhHHhhhhhhhhccccccccchhhhhccccccchhhhhhcccccCcchhhccccCCCc
Confidence 998888888999999999999999988876 67889999998888888888999988887765
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.1e-93 Score=816.29 Aligned_cols=476 Identities=34% Similarity=0.560 Sum_probs=412.7
Q ss_pred cCcccc-CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh-ccCCCceEEEeCcccHHHHHHHHHH
Q 001524 388 LPGKIG-NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTA 465 (1060)
Q Consensus 388 lp~~l~-~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~-~~~~k~vLIV~P~sLl~qW~~E~~k 465 (1060)
.|..+. ..|+|||.+|++||+.++..|-+|||||+||||||+|+|+++.++.. .+..||+||+||.+++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 455665 78999999999999999999999999999999999999999999987 4557999999999999999999999
Q ss_pred hcCCCcEEEEcccccchhhHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 466 VGLSAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 466 ~~~~~~v~~~~g~~~~~~~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
|+|+..+.+|+|....+........ ...++|+||||+++.++...+. .+.|.|+||||||+|||.+|
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk------------~~~W~ylvIDEaHRiKN~~s 306 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK------------KFNWRYLVIDEAHRIKNEKS 306 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh------------cCCceEEEechhhhhcchhh
Confidence 9999999999998754433322222 2368999999999988765553 66799999999999999999
Q ss_pred HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001524 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624 (1060)
Q Consensus 545 k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (1060)
.+++.++.+.+.+|++|||||+|||+.|||+|++|+.|++|++...|..||......+. ...+.+||.
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~------------~e~v~~Lh~ 374 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGD------------QELVSRLHK 374 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccC------------HHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976532222 236788999
Q ss_pred HhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhh--c---CCChHHHHHHHHHHhc
Q 001524 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA--F---DGSPLAALTILKKICD 699 (1060)
Q Consensus 625 ~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~--~---~~~~l~~l~~Lrkic~ 699 (1060)
.++||+|||+|.+|.. .||++.+.++++.|+..|++.|..++........ . .....+.+++||||||
T Consensus 375 vL~pFlLRR~K~dVe~--------sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccn 446 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEK--------SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCN 446 (971)
T ss_pred hhhHHHHHHHHHhHhh--------cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcC
Confidence 9999999999999954 5999999999999999999999999887543221 1 1345778899999999
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
||+|+...... ..+.. .+-....|+|+..|..||..+.+.|||||||||++
T Consensus 447 HPYLF~g~ePg------~pytt-----------------------dehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt 497 (971)
T KOG0385|consen 447 HPYLFDGAEPG------PPYTT-----------------------DEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMT 497 (971)
T ss_pred CccccCCCCCC------CCCCc-----------------------chHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHH
Confidence 99998641110 00000 01111269999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCC-CccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhh
Q 001524 780 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858 (1060)
Q Consensus 780 ~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~-~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QA 858 (1060)
.|||+|+.++..++|.|+||||+|+.++|...|+.|+..+ ..+|||+||+|||+||||+.|++||+||.+|||+.+.||
T Consensus 498 ~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQA 577 (971)
T KOG0385|consen 498 RMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQA 577 (971)
T ss_pred HHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHH
Confidence 9999999999999999999999999999999999999866 578999999999999999999999999999999999999
Q ss_pred hhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccccc----ccCCHHHHHHHHcCCCC
Q 001524 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI----RYFSQQDLRELLSLPKQ 924 (1060)
Q Consensus 859 iGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~~----r~fs~~eL~eLf~~~~~ 924 (1060)
++|||||||+++|+||||+|++||||+|++|+..|.+|-+-++++.... ....++++-.|+.++..
T Consensus 578 mDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~ 647 (971)
T KOG0385|consen 578 MDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGAD 647 (971)
T ss_pred HHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCch
Confidence 9999999999999999999999999999999999999999998765222 23557888888877643
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.6e-88 Score=791.27 Aligned_cols=520 Identities=33% Similarity=0.540 Sum_probs=431.7
Q ss_pred cccCCCcccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEEeCcccH
Q 001524 378 TLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLL 456 (1060)
Q Consensus 378 ~l~~~~~~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV~P~sLl 456 (1060)
++.....++.+|.-|...||.||..|+.||..+|.++-+|||||+||||||+|+|++++.+... +.+||.|||||.+++
T Consensus 598 tl~tTqVktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsvi 677 (1958)
T KOG0391|consen 598 TLVTTQVKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVI 677 (1958)
T ss_pred eeeeeeeccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhh
Confidence 4444556788999999999999999999999999999999999999999999999999999775 567899999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhh--hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEc
Q 001524 457 SHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILD 534 (1060)
Q Consensus 457 ~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~--~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlD 534 (1060)
-||.-||++|||+.++..|+|.....+... .-|. +.++|+||+|..+..+...++ ...|.|+|||
T Consensus 678 LnWEMElKRwcPglKILTYyGs~kErkeKR-qgW~kPnaFHVCItSYklv~qd~~AFk------------rkrWqyLvLD 744 (1958)
T KOG0391|consen 678 LNWEMELKRWCPGLKILTYYGSHKERKEKR-QGWAKPNAFHVCITSYKLVFQDLTAFK------------RKRWQYLVLD 744 (1958)
T ss_pred hhhhHHHhhhCCcceEeeecCCHHHHHHHh-hcccCCCeeEEeehhhHHHHhHHHHHH------------hhccceeehh
Confidence 999999999999999999999875544332 2232 347899999999988776654 5569999999
Q ss_pred CCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHh
Q 001524 535 EGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRI 614 (1060)
Q Consensus 535 EAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 614 (1060)
|||+|||..+++++++.++++.+|++|||||+||+++|||+|+.||.|..|.+...|+.||.+|+....... ..+
T Consensus 745 EaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs-----qey 819 (1958)
T KOG0391|consen 745 EAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS-----QEY 819 (1958)
T ss_pred hhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc-----hhh
Confidence 999999999999999999999999999999999999999999999999999999999999999976544332 334
Q ss_pred hHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHH----HhhhcCCChHHH
Q 001524 615 GSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI----VLSAFDGSPLAA 690 (1060)
Q Consensus 615 ~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~----~~~~~~~~~l~~ 690 (1060)
+...+.+||+.++||+|||+|.+|. ++||.|.+++|+|+|+..|+.+|+.|+.... +.+..-.+++++
T Consensus 820 n~klV~RLHkVlrPfiLRRlK~dVE--------KQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlni 891 (1958)
T KOG0391|consen 820 NHKLVIRLHKVLRPFILRRLKRDVE--------KQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNI 891 (1958)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHH--------HhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHH
Confidence 5677889999999999999999994 4799999999999999999999999987543 333334568999
Q ss_pred HHHHHHHhcChhhhhhhhhh-------------------------------------------hh---------------
Q 001524 691 LTILKKICDHPLLLTKRAAE-------------------------------------------DV--------------- 712 (1060)
Q Consensus 691 l~~Lrkic~hP~L~~~~~~~-------------------------------------------~~--------------- 712 (1060)
+++||++||||.|+..+... .+
T Consensus 892 lmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~ 971 (1958)
T KOG0391|consen 892 LMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASA 971 (1958)
T ss_pred HHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccc
Confidence 99999999999886422110 00
Q ss_pred hhhccc-----------C-C-----------------------------------------------C------------
Q 001524 713 LDGMDS-----------M-L-----------------------------------------------N------------ 721 (1060)
Q Consensus 713 ~~~~~~-----------~-~-----------------------------------------------~------------ 721 (1060)
+.-+.. . + +
T Consensus 972 l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~ 1051 (1958)
T KOG0391|consen 972 LPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQ 1051 (1958)
T ss_pred cccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccC
Confidence 000000 0 0 0
Q ss_pred ------------------------h----------------------------------------------------HH-
Q 001524 722 ------------------------P----------------------------------------------------ED- 724 (1060)
Q Consensus 722 ------------------------~----------------------------------------------------e~- 724 (1060)
+ ++
T Consensus 1052 p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~R 1131 (1958)
T KOG0391|consen 1052 PLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEER 1131 (1958)
T ss_pred ccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHH
Confidence 0 00
Q ss_pred HH-HHHHHHHH--------------------------------------------Hhhhhhhh-----------------
Q 001524 725 AA-LAEKLAMH--------------------------------------------IADVAEKD----------------- 742 (1060)
Q Consensus 725 ~~-~~~~l~~~--------------------------------------------~~~~~~~~----------------- 742 (1060)
.. ..+.+... +.++.+..
T Consensus 1132 krql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~ 1211 (1958)
T KOG0391|consen 1132 KRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAP 1211 (1958)
T ss_pred HHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCC
Confidence 00 00000000 00000000
Q ss_pred ----------------------h-hh---------------hhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHH
Q 001524 743 ----------------------D-FQ---------------EQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 784 (1060)
Q Consensus 743 ----------------------~-~~---------------~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~ 784 (1060)
. +. ....-.++|++.|.-||+++...|||||||+|++.|||+
T Consensus 1212 ~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDV 1291 (1958)
T KOG0391|consen 1212 RPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDV 1291 (1958)
T ss_pred CCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHH
Confidence 0 00 000001789999999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhh
Q 001524 785 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 864 (1060)
Q Consensus 785 L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~R 864 (1060)
|+.+|..+||-|+|+||+++.++|+.++++||.+..++|||+||+.||+||||++|++|||||.+|||..+.||.+|+||
T Consensus 1292 LeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChR 1371 (1958)
T KOG0391|consen 1292 LEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 1371 (1958)
T ss_pred HHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-ccccCCHHHHHHHHcCCC
Q 001524 865 IGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPK 923 (1060)
Q Consensus 865 iGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~~~~ 923 (1060)
|||+|+|+|||||...||||+|+++...|+.|-+-++++.+ ...||++.++++||.++.
T Consensus 1372 IGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1372 IGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred hcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 99999999999999999999999999999999888887655 567899999999998743
No 4
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.6e-86 Score=788.76 Aligned_cols=495 Identities=37% Similarity=0.602 Sum_probs=434.1
Q ss_pred ccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-------CCCceEEEeCcccHH
Q 001524 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------LIKRALVVAPKTLLS 457 (1060)
Q Consensus 385 ~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~-------~~k~vLIV~P~sLl~ 457 (1060)
.|.||-.|..+||.||.+||+|+..+...+-.|||||+||||||+|+|++++.-...+ ...|.|||||.+|..
T Consensus 965 ~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtG 1044 (1549)
T KOG0392|consen 965 EYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTG 1044 (1549)
T ss_pred ccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhh
Confidence 5889999999999999999999999888889999999999999999999998765544 346899999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCC
Q 001524 458 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537 (1060)
Q Consensus 458 qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH 537 (1060)
+|+.|+.+|+|..++..|.|....+.. ++...++.+|+||+|+.++++...+. .+.|.|+|+||+|
T Consensus 1045 HW~~E~~kf~pfL~v~~yvg~p~~r~~--lR~q~~~~~iiVtSYDv~RnD~d~l~------------~~~wNYcVLDEGH 1110 (1549)
T KOG0392|consen 1045 HWKSEVKKFFPFLKVLQYVGPPAERRE--LRDQYKNANIIVTSYDVVRNDVDYLI------------KIDWNYCVLDEGH 1110 (1549)
T ss_pred HHHHHHHHhcchhhhhhhcCChHHHHH--HHhhccccceEEeeHHHHHHHHHHHH------------hcccceEEecCcc
Confidence 999999999999999999887554333 44455678999999999999988765 4669999999999
Q ss_pred cCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHH
Q 001524 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 617 (1060)
Q Consensus 538 ~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 617 (1060)
-|||..++.+++++++++.||++|||||+|||+.|||+|++|++|+++|+.+.|..+|.+||...++......+...|..
T Consensus 1111 VikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1111 VIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred eecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHh----------hh--cCC
Q 001524 618 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL----------SA--FDG 685 (1060)
Q Consensus 618 ~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~----------~~--~~~ 685 (1060)
++..||+.+-||++||+|.+|+. .||+|.....+|.|++.|+++|+.|..+.... +. ...
T Consensus 1191 AleaLHKqVLPF~LRRlKedVL~--------DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~ 1262 (1549)
T KOG0392|consen 1191 ALEALHKQVLPFLLRRLKEDVLK--------DLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKT 1262 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------hCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchH
Confidence 99999999999999999999976 59999999999999999999999998872211 00 123
Q ss_pred ChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhh
Q 001524 686 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL 765 (1060)
Q Consensus 686 ~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~ 765 (1060)
..++++..||+.|+||.++.... .|.-......+......+. ....++|+.+|.++|.++
T Consensus 1263 HvFqaLqYlrKLcnHpaLvlt~~------------hp~la~i~~~l~~~~~~LH--------di~hspKl~AL~qLL~eC 1322 (1549)
T KOG0392|consen 1263 HVFQALQYLRKLCNHPALVLTPV------------HPDLAAIVSHLAHFNSSLH--------DIQHSPKLSALKQLLSEC 1322 (1549)
T ss_pred HHHHHHHHHHHhcCCcceeeCCC------------cchHHHHHHHHHHhhhhHH--------HhhhchhHHHHHHHHHHh
Confidence 46899999999999999876421 1122222222221111110 113699999999999987
Q ss_pred cc--------------CCCceEEEeccHHHHHHHHHHHhhc---CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEec
Q 001524 766 IP--------------EGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828 (1060)
Q Consensus 766 ~~--------------~g~KvLIFsq~~~~ld~L~~~L~~~---gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST 828 (1060)
-- .+||+|||||++.|+|++++-|-+. .+.|.|+||++++.+|++++.+||+++.+.|+|+||
T Consensus 1323 Gig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTT 1402 (1549)
T KOG0392|consen 1323 GIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTT 1402 (1549)
T ss_pred CCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEee
Confidence 31 4799999999999999999988765 567999999999999999999999999999999999
Q ss_pred CCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-cc
Q 001524 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QI 907 (1060)
Q Consensus 829 ~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~-~~ 907 (1060)
.+||.|||||+|++||+++-+|||..+.|||+|||||||+|.|.||||||.||+||+|+..|.+|...++++++..+ .+
T Consensus 1403 hVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl 1482 (1549)
T KOG0392|consen 1403 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASL 1482 (1549)
T ss_pred eccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998665 35
Q ss_pred ccCCHHHHHHHHcC
Q 001524 908 RYFSQQDLRELLSL 921 (1060)
Q Consensus 908 r~fs~~eL~eLf~~ 921 (1060)
..+..++|.+||+.
T Consensus 1483 ~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1483 ETMDTDQLLDLFTV 1496 (1549)
T ss_pred cccCHHHHHHHhcc
Confidence 66788999999983
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-86 Score=761.38 Aligned_cols=492 Identities=32% Similarity=0.488 Sum_probs=409.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIR 473 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~ 473 (1060)
.+|.|||+.||+||.-+|..+-+|||||+||||||+|+|||+++++..+..+|.|||||.+++.||.+||.+|||..+|.
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVE 477 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccchhhHHHH--HhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHH
Q 001524 474 EYFGTCVKTRQYELQ--YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551 (1060)
Q Consensus 474 ~~~g~~~~~~~~~~~--~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~ 551 (1060)
.|+|....++..... .-...|+|++|||+.+..... ++..+....|+++|.||||.+||..|.+++.+.
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd---------DRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD---------DRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH---------HHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 999987554443222 122368999999999875432 223345778999999999999999999999999
Q ss_pred cCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChH-HHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHHH
Q 001524 552 EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNK-WFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630 (1060)
Q Consensus 552 ~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~-~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 630 (1060)
.+++.+|++|||||+|||+.|||+||.|+.|..|.+.. .+...|...-.. +............+.+...+++||+
T Consensus 549 ~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~----d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS----DGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc----cchhhHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999887653 455555432111 2222233344456788889999999
Q ss_pred HHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhh-hcC----CChHHHHHHHHHHhcChhhhh
Q 001524 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLS-AFD----GSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 631 LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~-~~~----~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
|||.|.+|+. .||+|..++.+|.|+..|+.+|..+++...... ... ...-..+++||++++||.|+.
T Consensus 625 LRR~K~qVL~--------~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 625 LRRLKSQVLK--------QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred HHHHHHHHHH--------hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 9999999976 599999999999999999999999887653211 111 112458999999999999999
Q ss_pred hhhhhhhhhhcccCCChHHH-------------HHHHHHHHHH--hhhh--hhhhhhhhcccccchHHHHHHHHHhhccC
Q 001524 706 KRAAEDVLDGMDSMLNPEDA-------------ALAEKLAMHI--ADVA--EKDDFQEQHDNISCKISFILSLLDKLIPE 768 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~-------------~~~~~l~~~~--~~~~--~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~ 768 (1060)
..+..+.+..|...+-.+.+ .....+.-|- .... ....+....+..|+|...|..||.++...
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~ 776 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKK 776 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhc
Confidence 88887777666544432222 1111111110 0000 11122233444699999999999999999
Q ss_pred CCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCC
Q 001524 769 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848 (1060)
Q Consensus 769 g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~ 848 (1060)
|+||||||||+.|||+|+..|...+++|+|+||+|....||.+|++|+.+.+++|||+||+|||.||||++||+||++|.
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~ 856 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI 856 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 001524 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 906 (1060)
Q Consensus 849 ~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~ 906 (1060)
++||..+.||.+||||+||+|+|+|||||+.+||||.|++.+..|..|-..++++.+.
T Consensus 857 dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 857 DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred CCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999999999999998888876543
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.3e-84 Score=777.58 Aligned_cols=474 Identities=34% Similarity=0.559 Sum_probs=408.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-CCCceEEEeCcccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~-~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v 472 (1060)
..||+||++|++||+..|+.+.+|||||+||||||+|+|+|+.+++... ..+|+|||+|.+.+.+|++||..|. ..++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhce
Confidence 6899999999999999999999999999999999999999999998876 7899999999999999999999999 8999
Q ss_pred EEEcccccchhhHHHHHhh--h-----CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH
Q 001524 473 REYFGTCVKTRQYELQYVL--Q-----DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 545 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~--~-----~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk 545 (1060)
++|+|............+. . +++++||||+++.++...+ ..+.|.++++||||++||..++
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L------------~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAEL------------SKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhh------------ccCCcceeeecHHhhcCchHHH
Confidence 9999986544322221111 1 4789999999998765544 5778999999999999999999
Q ss_pred HHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 546 RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 546 ~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
++..+..+...||+++||||+||++.|||+|++|+.|+.|.+...|...|... ...-++.|+..
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~----------------~e~~~~~L~~~ 579 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE----------------TEEQVRKLQQI 579 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch----------------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877210 12345789999
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhh--hc---CCChHHHHHHHHHHhcC
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLS--AF---DGSPLAALTILKKICDH 700 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~--~~---~~~~l~~l~~Lrkic~h 700 (1060)
|+||+|||++.+|. ..||++.+.++.|.||..|++.|+.+|..+.-.. .. ..+.++.++.||+||||
T Consensus 580 L~P~~lRr~kkdve--------kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNH 651 (1373)
T KOG0384|consen 580 LKPFLLRRLKKDVE--------KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNH 651 (1373)
T ss_pred hhHHHHHHHHhhhc--------cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCC
Confidence 99999999999994 4699999999999999999999999998765321 11 23578899999999999
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
|+|+..... ....+..... .+.........|+|+..|..||.++++.|||||||||++.
T Consensus 652 pyLi~gaee-~~~~~~~~~~--------------------~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVR 710 (1373)
T KOG0384|consen 652 PYLIKGAEE-KILGDFRDKM--------------------RDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVR 710 (1373)
T ss_pred ccccCcHHH-HHHHhhhhcc--------------------hHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHH
Confidence 999864321 1111111000 1111222334799999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcC-CCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhh
Q 001524 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859 (1060)
Q Consensus 781 ~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~-~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAi 859 (1060)
|||+|+.+|..++|+|.||||++..+.|+.+|+.|+.. ...+|||+||+|||+||||+.|++|||||.+|||+.+.||+
T Consensus 711 mLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAq 790 (1373)
T KOG0384|consen 711 MLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQ 790 (1373)
T ss_pred HHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999974 45789999999999999999999999999999999999999
Q ss_pred hhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc------ccccccCCHHHHHHHHcCCCCC
Q 001524 860 DRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH------KEQIRYFSQQDLRELLSLPKQG 925 (1060)
Q Consensus 860 GRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~------~~~~r~fs~~eL~eLf~~~~~~ 925 (1060)
.|||||||++.|.||||||.+|+||-|+.|+..|..|-.+++.. ......|+++||..|+.++..+
T Consensus 791 ARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~ 862 (1373)
T KOG0384|consen 791 ARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYE 862 (1373)
T ss_pred HHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHH
Confidence 99999999999999999999999999999999999998887642 2234679999999999887543
No 7
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.6e-83 Score=739.28 Aligned_cols=584 Identities=28% Similarity=0.432 Sum_probs=464.8
Q ss_pred ccccCccccCCCChHHHHHHHHHHHhh---------cCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeCc
Q 001524 385 TYMLPGKIGNMLFPHQREGLRWLWSLH---------CQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPK 453 (1060)
Q Consensus 385 ~~~lp~~l~~~L~phQ~egV~wl~~~~---------~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P~ 453 (1060)
.+.+|..|...|+|||..||+|||... ..|-||||||-||||||+|+|+|++.++.+. ..+++|||||.
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl 737 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL 737 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcch
Confidence 455788899999999999999999753 3578999999999999999999999887654 35699999999
Q ss_pred ccHHHHHHHHHHhcCCC----cEEEEcccc---cchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcc-c--CcCCC
Q 001524 454 TLLSHWIKELTAVGLSA----KIREYFGTC---VKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFI-S--DEAGD 523 (1060)
Q Consensus 454 sLl~qW~~E~~k~~~~~----~v~~~~g~~---~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~-~--~~~~~ 523 (1060)
+++.||.+||.+|.++. .+.++.-.. ...|.+.+..|...++|+|+.|+++++....-...... . -...+
T Consensus 738 Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l 817 (1567)
T KOG1015|consen 738 NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL 817 (1567)
T ss_pred HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhc
Confidence 99999999999999863 233333222 24567778889999999999999998754211100000 0 00112
Q ss_pred CCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCC
Q 001524 524 DDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 603 (1060)
Q Consensus 524 ~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~ 603 (1060)
-...+|+|||||||.|||..+.+++|+..+.+++||+|||||+||||.|+|+|++|+.|++||+..+|.++|.+||.+|+
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq 897 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQ 897 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHH----
Q 001524 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV---- 679 (1060)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~---- 679 (1060)
+.+++.....++....+.|+.+|..++-|+--..+ ...|||+.+++|.++||+.|..||..|+.....
T Consensus 898 ~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vl--------tk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d 969 (1567)
T KOG1015|consen 898 CADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVL--------TKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGND 969 (1567)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--------cccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCc
Confidence 99999999999999999999999999999866555 457999999999999999999999999982111
Q ss_pred ---hhhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhh------hcccCCChHH-------------------------H
Q 001524 680 ---LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLD------GMDSMLNPED-------------------------A 725 (1060)
Q Consensus 680 ---~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~------~~~~~~~~e~-------------------------~ 725 (1060)
........|+.+..|++|++||..+..+....... .|+..+.... .
T Consensus 970 ~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~De 1049 (1567)
T KOG1015|consen 970 SEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDE 1049 (1567)
T ss_pred cccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccc
Confidence 11123356889999999999998875433211100 0111110000 0
Q ss_pred -----------H---H----------------------HHHHHHHHhhhhh------hhhhhh-------hcccccchHH
Q 001524 726 -----------A---L----------------------AEKLAMHIADVAE------KDDFQE-------QHDNISCKIS 756 (1060)
Q Consensus 726 -----------~---~----------------------~~~l~~~~~~~~~------~~~~~~-------~~~~~S~Kl~ 756 (1060)
+ . .-.+...+..... ..+|.. .....|+||.
T Consensus 1050 sss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmi 1129 (1567)
T KOG1015|consen 1050 SSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMI 1129 (1567)
T ss_pred cccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCccee
Confidence 0 0 0000000000000 001111 1123699999
Q ss_pred HHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh----------------------cCCeEEEEECCCCHHHHHHHHHH
Q 001524 757 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----------------------KGYKFLRIDGTTKASDRVKIVND 814 (1060)
Q Consensus 757 ~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~----------------------~gi~~~ridG~~s~~eR~~iI~~ 814 (1060)
.|++||..+.+-|.|+|||||+..+|++|+.+|.. .|..|.||||+++..+|++++++
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999964 36689999999999999999999
Q ss_pred hhcCCC--ccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHH
Q 001524 815 FQEGDV--APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIF 892 (1060)
Q Consensus 815 F~~~~~--~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~ 892 (1060)
||+..+ .++|||||+||++||||.+||||||||..|||+.+.|+|-|+||.||+++|+||||++.||+||+||.||+.
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVT 1289 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVT 1289 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHh
Confidence 998665 458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCHHHHHHHHcCCCCCCCchhhHHHHHhhhcCCCCCChHHHHHHHHhhhcCccccccCccccc
Q 001524 893 KGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 972 (1060)
Q Consensus 893 K~~l~~~~~~~~~~~r~fs~~eL~eLf~~~~~~~~~s~tq~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~g~~~h~~l~~ 972 (1060)
|+++...+++.....|.|++.||.+||++...-++.... +.... -.-+.+.+|+-..++.-|+|...|+.||.
T Consensus 1290 Kqsls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sE------r~~~~-lpKdrllae~l~~~q~~i~~y~ehdSll~ 1362 (1567)
T KOG1015|consen 1290 KQSLSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSE------RDTPM-LPKDRLLAELLQIHQEHIVGYHEHDSLLD 1362 (1567)
T ss_pred HhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccc------ccccc-CCchhHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999998654433211 00000 01234566776677777999999999999
Q ss_pred chhhhhccchH
Q 001524 973 KTARVQVVQEE 983 (1060)
Q Consensus 973 ~~~~~~~~~~~ 983 (1060)
..+....+.++
T Consensus 1363 ~~e~eelteee 1373 (1567)
T KOG1015|consen 1363 HKEEEELTEEE 1373 (1567)
T ss_pred chhHHHHHHHh
Confidence 88777766555
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.6e-82 Score=782.78 Aligned_cols=477 Identities=32% Similarity=0.523 Sum_probs=407.7
Q ss_pred ccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEEeCcccHHHHHHHHHH
Q 001524 387 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTA 465 (1060)
Q Consensus 387 ~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV~P~sLl~qW~~E~~k 465 (1060)
..|..+...|+|||++|++||+.++..+.||||||+||||||+|+|++++.+... +..+|+|||||.+++.||..||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 3577888899999999999999999999999999999999999999999988653 456899999999999999999999
Q ss_pred hcCCCcEEEEcccccchhhHHHH-HhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 466 VGLSAKIREYFGTCVKTRQYELQ-YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 466 ~~~~~~v~~~~g~~~~~~~~~~~-~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
|+|...+..++|........... .....++|+||||+++.+....+ ....|++|||||||+|||..|
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L------------~k~~W~~VIvDEAHrIKN~~S 308 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL------------KRFSWRYIIIDEAHRIKNENS 308 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh------------ccCCCCEEEEcCccccCCHHH
Confidence 99999999998875433221111 12346899999999998765443 356799999999999999999
Q ss_pred HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001524 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624 (1060)
Q Consensus 545 k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (1060)
+++++++.+++.+||+|||||++|++.|||+|++|+.|+.|++...|..+|..+... ........|+.
T Consensus 309 klskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~------------~~~e~i~~L~~ 376 (1033)
T PLN03142 309 LLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN------------DQQEVVQQLHK 376 (1033)
T ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc------------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999763211 12345678999
Q ss_pred HhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhc---CCChHHHHHHHHHHhcCh
Q 001524 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF---DGSPLAALTILKKICDHP 701 (1060)
Q Consensus 625 ~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~---~~~~l~~l~~Lrkic~hP 701 (1060)
+++||++||++.+|.. .||++.+.+++|.|++.|+.+|..++......... ....+..++.||++|+||
T Consensus 377 ~L~pf~LRR~KsdV~~--------~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP 448 (1033)
T PLN03142 377 VLRPFLLRRLKSDVEK--------GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHP 448 (1033)
T ss_pred HhhHHHhhhhHHHHhh--------hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCH
Confidence 9999999999999944 59999999999999999999999998764322211 123577889999999999
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHH
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ 781 (1060)
+++....... .... .......|+|+..|..+|..+...|+||||||||+.+
T Consensus 449 ~L~~~~ep~~------~~~~-----------------------~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~ 499 (1033)
T PLN03142 449 YLFQGAEPGP------PYTT-----------------------GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRL 499 (1033)
T ss_pred HhhhcccccC------cccc-----------------------hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHH
Confidence 9875321100 0000 0011225899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCC-CccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhh
Q 001524 782 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860 (1060)
Q Consensus 782 ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~-~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiG 860 (1060)
+++|+.+|...|++|++|+|+++..+|+++|+.|+.+. ..+|||+||+|||+||||+.|++||+||++|||+.+.||+|
T Consensus 500 LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAid 579 (1033)
T PLN03142 500 LDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQD 579 (1033)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999754 45689999999999999999999999999999999999999
Q ss_pred hhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc--cccCCHHHHHHHHcCCCC
Q 001524 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ--IRYFSQQDLRELLSLPKQ 924 (1060)
Q Consensus 861 Ra~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~--~r~fs~~eL~eLf~~~~~ 924 (1060)
|+|||||+++|+||||++.|||||+|++++..|..+...+++.... ...++.++|.+||.++.+
T Consensus 580 RaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 580 RAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred HhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999999865432 256899999999987643
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-80 Score=701.91 Aligned_cols=487 Identities=36% Similarity=0.591 Sum_probs=403.1
Q ss_pred cccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEEeCcccHHHHHHH
Q 001524 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKE 462 (1060)
Q Consensus 384 ~~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV~P~sLl~qW~~E 462 (1060)
..++.|.-++.+|+.||..|++||..+|.+|-+|||||+||||||+|+|++++.+... ...||+|||+|++++++|+.|
T Consensus 556 ~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 556 RTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999875 456899999999999999999
Q ss_pred HHHhcCCCcEEEEcccccchhhHHHHH---------hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEE
Q 001524 463 LTAVGLSAKIREYFGTCVKTRQYELQY---------VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 533 (1060)
Q Consensus 463 ~~k~~~~~~v~~~~g~~~~~~~~~~~~---------~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIl 533 (1060)
|.+|+|..++..|.|....... +.+ ....++|+||||+++..+.+.++ ...|.|+|+
T Consensus 636 isrFlP~~k~lpywGs~~eRki--LrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q------------kvKWQYMIL 701 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKI--LRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ------------KVKWQYMIL 701 (1185)
T ss_pred HHHhCccceeecCcCChhhhHH--HHHhcchhhhhccCCCceEEEEeeeeeechHHHHH------------hhhhhheeh
Confidence 9999999999999987543322 222 22357899999999998877664 567999999
Q ss_pred cCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHH
Q 001524 534 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613 (1060)
Q Consensus 534 DEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 613 (1060)
|||+.||...|.+++.+..++|+.|++||||||||+..|||+|+.|+.|.+|.+..+|.+||...|......+.+
T Consensus 702 DEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~t----- 776 (1185)
T KOG0388|consen 702 DEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTT----- 776 (1185)
T ss_pred hHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999887664443332
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHH
Q 001524 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI 693 (1060)
Q Consensus 614 ~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~ 693 (1060)
......++||.+++||||||.|.+|+.+ |..|++..|+|.|+..|+.+|+.+..+-..... ..++++
T Consensus 777 lneqqL~RLH~ILKPFMLRRvKkdV~sE--------Lg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~-----~~~vmQ 843 (1185)
T KOG0388|consen 777 LNEQQLQRLHAILKPFMLRRVKKDVISE--------LGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEM-----ENLVMQ 843 (1185)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHHHHHH--------hccceEEEEEechhHHHHHHHHHHHHHhhHHHH-----HHHHHH
Confidence 2344578899999999999999999765 889999999999999999999998765332221 247899
Q ss_pred HHHHhcChhhhhhhhhh------------hhhh----------------------------------hcccCC-------
Q 001524 694 LKKICDHPLLLTKRAAE------------DVLD----------------------------------GMDSML------- 720 (1060)
Q Consensus 694 Lrkic~hP~L~~~~~~~------------~~~~----------------------------------~~~~~~------- 720 (1060)
||++||||.|+...... ++.. ++....
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 99999999987533210 0000 000000
Q ss_pred -----------------ChHHHH--H-----------HHHHHHHHhhhhh----------------------hhhh----
Q 001524 721 -----------------NPEDAA--L-----------AEKLAMHIADVAE----------------------KDDF---- 744 (1060)
Q Consensus 721 -----------------~~e~~~--~-----------~~~l~~~~~~~~~----------------------~~~~---- 744 (1060)
+-+... . .+.....+..... ..+.
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 000000 0 0000000000000 0000
Q ss_pred ----------------hhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHH
Q 001524 745 ----------------QEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDR 808 (1060)
Q Consensus 745 ----------------~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR 808 (1060)
.......|+|+..|.+||.++...||+||+|.|+++|+++|+.+|..+||.|+|+||+.+..+|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 0001123899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHH
Q 001524 809 VKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888 (1060)
Q Consensus 809 ~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~ 888 (1060)
..+|.+|+. +.++|||+||+|||.|||||+|++||+||.+|||..+.||++||||.||+++|.||||++.|||||+|+.
T Consensus 1084 rd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~ 1162 (1185)
T KOG0388|consen 1084 RDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLE 1162 (1185)
T ss_pred HHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHH
Confidence 999999999 6699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 001524 889 KQIFKGGLFKTATEH 903 (1060)
Q Consensus 889 rq~~K~~l~~~~~~~ 903 (1060)
++..|..+-.-++.+
T Consensus 1163 rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1163 RANQKDEVQQMVMHG 1177 (1185)
T ss_pred HhhhHHHHHHHHHcC
Confidence 999998887777655
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=9.6e-78 Score=715.28 Aligned_cols=503 Identities=33% Similarity=0.536 Sum_probs=418.0
Q ss_pred cccccCccccCCCChHHHHHHHHHHHhhc------CCCCeEEEcCCCCchHHHHHHHHHHHhhccCC-----CceEEEeC
Q 001524 384 STYMLPGKIGNMLFPHQREGLRWLWSLHC------QGKGGILGDDMGLGKTMQICGFLAGLFHSRLI-----KRALVVAP 452 (1060)
Q Consensus 384 ~~~~lp~~l~~~L~phQ~egV~wl~~~~~------~~~GgILaDemGLGKTlqaiali~~l~~~~~~-----k~vLIV~P 452 (1060)
..+.+.|.++..|||||++|+.|||+... ...|||+||+||+|||+|+|+||+.+++..+. .++|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 46677888999999999999999998642 34799999999999999999999999998887 89999999
Q ss_pred cccHHHHHHHHHHhcCC--CcEEEEcccccchhhHH------HHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCC
Q 001524 453 KTLLSHWIKELTAVGLS--AKIREYFGTCVKTRQYE------LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDD 524 (1060)
Q Consensus 453 ~sLl~qW~~E~~k~~~~--~~v~~~~g~~~~~~~~~------~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~ 524 (1060)
++|+.+|.+||.+|... .....+.+.... .-.. ..+..-.+-|++++|++++.+...+.
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il------------ 373 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL------------ 373 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh------------
Confidence 99999999999999764 344444444432 0111 11122235689999999987665443
Q ss_pred CCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCC
Q 001524 525 DAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~ 604 (1060)
...++++||||||+.||..+.+++++..+.+++||+|||||+||++.|+|++++|++|+.+++...|...|..|+.+++.
T Consensus 374 ~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~ 453 (776)
T KOG0390|consen 374 LIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRD 453 (776)
T ss_pred cCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcC
Q 001524 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 684 (1060)
Q Consensus 605 ~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~ 684 (1060)
..++...... .+.+++|..++..|++||+.... ...||++.+++|+|.+++.|+.+|..++... ....+.
T Consensus 454 ~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il--------~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~ 523 (776)
T KOG0390|consen 454 ADASEEDRER-EERLQELRELTNKFILRRTGDIL--------LKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLK 523 (776)
T ss_pred CCcchhhhhh-HHHHHHHHHHHHhheeecccchh--------hhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhh
Confidence 8887777766 56699999999999999998555 4579999999999999999999999999987 666667
Q ss_pred CChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHh
Q 001524 685 GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 764 (1060)
Q Consensus 685 ~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~ 764 (1060)
+..+..++.|+++|+||.|+....... .-.....+..... .............|+|+..|+.+|..
T Consensus 524 ~~~l~~~~~L~k~cnhP~L~~~~~~~~---~e~~~~~~~~~~~-----------~~~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 524 GYALELITKLKKLCNHPSLLLLCEKTE---KEKAFKNPALLLD-----------PGKLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred cchhhHHHHHHHHhcCHHhhccccccc---ccccccChHhhhc-----------ccccccccccchhhhHHHHHHHHHHH
Confidence 779999999999999999985211100 0000000000000 00000111122258899999999866
Q ss_pred hccC-CCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCc-cEEEEecCCcccccCcccCCE
Q 001524 765 LIPE-GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVA-PIFLLTSQVGGLGLTLTKADR 842 (1060)
Q Consensus 765 ~~~~-g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~-~V~LlST~agg~GLNLt~A~~ 842 (1060)
..+. ..++++-++++.++++++.++..+|+.++++||+|+..+|+.+|+.||+.... +|||+|++|||+||||++|+|
T Consensus 590 ~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 590 IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 5443 35666777889999999999999999999999999999999999999998766 999999999999999999999
Q ss_pred EEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-ccccCCHHHHHHHHcC
Q 001524 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSL 921 (1060)
Q Consensus 843 VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~~ 921 (1060)
||+|||+|||+.+.||++||||.||+|+|+||||++.||+||+||+||..|..+...+++..+ ..+.|+.+++..+|..
T Consensus 670 lil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~ 749 (776)
T KOG0390|consen 670 LILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDL 749 (776)
T ss_pred EEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999987654 4566777889999976
Q ss_pred CC
Q 001524 922 PK 923 (1060)
Q Consensus 922 ~~ 923 (1060)
..
T Consensus 750 ~~ 751 (776)
T KOG0390|consen 750 EL 751 (776)
T ss_pred hc
Confidence 54
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.7e-76 Score=696.29 Aligned_cols=459 Identities=33% Similarity=0.558 Sum_probs=404.3
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-CCCceEEEeCcccHHHHHHHHHHhcCCCc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~-~~k~vLIV~P~sLl~qW~~E~~k~~~~~~ 471 (1060)
+..|++||+.|++||.+++..+-+|||||+||||||+|+|+++.+++... ..+|.|||||.+++.+|..||.+|+|+..
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccccee
Confidence 55899999999999999999999999999999999999999999998754 56899999999999999999999999999
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~ 551 (1060)
...|.|+...++.........+++|++|||+.+.++...+ ..+.|.++||||+|++||..++++..+.
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lL------------sKI~W~yMIIDEGHRmKNa~~KLt~~L~ 539 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALL------------SKISWKYMIIDEGHRMKNAICKLTDTLN 539 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHH------------hccCCcceeecccccccchhhHHHHHhh
Confidence 9999999887777666555688999999999998755444 4678999999999999999999999998
Q ss_pred -cCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCC-cchhhHHHHhhHHHHHHHHHHhhHH
Q 001524 552 -EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND-KHALDREKRIGSAVAKELRERIQPY 629 (1060)
Q Consensus 552 -~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~-~~~~~~~~~~~~~~~~~L~~~l~p~ 629 (1060)
...+.+|++|||||+||++.|||+||+|+-|.+|.+...|..||..|+...+. ...+..+. --++.+||..++||
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt---lLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET---LLIIRRLHKVLRPF 616 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH---HHHHHHHHHhhhHH
Confidence 67999999999999999999999999999999999999999999999988665 33344333 24678999999999
Q ss_pred HHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHh------hhcCCChHHHHHHHHHHhcChhh
Q 001524 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL------SAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 630 ~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~------~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
+|||+|.+|.. .||.|++.++.|.||..|+.+|..+.+..... ....+.....++.||+|||||++
T Consensus 617 lLRRlKkeVE~--------~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l 688 (1157)
T KOG0386|consen 617 LLRRLKKEVEQ--------ELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL 688 (1157)
T ss_pred HHHhhhHHHhh--------hCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh
Confidence 99999999954 59999999999999999999999998764433 11223457788999999999999
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
+..... .+...... ......++|+..|..+|.++...||+||.|+|++.+++
T Consensus 689 f~~ve~-----~~~~~~~~-----------------------~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmd 740 (1157)
T KOG0386|consen 689 FANVEN-----SYTLHYDI-----------------------KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMD 740 (1157)
T ss_pred hhhhcc-----ccccccCh-----------------------hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHH
Confidence 842110 00000000 11223699999999999999999999999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcC-CCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~-~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa 862 (1060)
+++.+|..++++|.|+||+++..+|-.+++.||.. ..+++||+||++||+||||+.|++||+||+.|||..+.||.+|+
T Consensus 741 imEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 741 ILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred HHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999975 45889999999999999999999999999999999999999999
Q ss_pred hhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Q 001524 863 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902 (1060)
Q Consensus 863 ~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~ 902 (1060)
|||||+++|.|+||++.+++||+|++++..|.++-..++.
T Consensus 821 hrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred HHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 9999999999999999999999999999999988877764
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-72 Score=617.68 Aligned_cols=515 Identities=26% Similarity=0.386 Sum_probs=399.3
Q ss_pred cccCccccCCCChHHHHHHHHHHHhhc-CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 386 YMLPGKIGNMLFPHQREGLRWLWSLHC-QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 386 ~~lp~~l~~~L~phQ~egV~wl~~~~~-~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
...|..+...|.|||++|+.|+..... ...||||||+||+|||+|+|+++.. .....|+|||||.-.+.||.+||.
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla---e~~ra~tLVvaP~VAlmQW~nEI~ 251 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA---EVDRAPTLVVAPTVALMQWKNEIE 251 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh---ccccCCeeEEccHHHHHHHHHHHH
Confidence 446777888899999999999998765 5689999999999999999998876 233468999999999999999999
Q ss_pred HhcC-CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccc-----cCCCcccCcCCCCCCCccEEEEcCCCc
Q 001524 465 AVGL-SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL-----RGSSFISDEAGDDDAIWDYMILDEGHL 538 (1060)
Q Consensus 465 k~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l-----~~~~~~~~~~~~~~~~wd~VIlDEAH~ 538 (1060)
++.. ..++.+|+|......... +..|+||+|||..+.+.+..- +.....+....++.+.|.+||+||||.
T Consensus 252 ~~T~gslkv~~YhG~~R~~nike----l~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~ 327 (791)
T KOG1002|consen 252 RHTSGSLKVYIYHGAKRDKNIKE----LMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHN 327 (791)
T ss_pred HhccCceEEEEEecccccCCHHH----hhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcc
Confidence 9865 457888999765544332 458999999999987654331 111223345567789999999999999
Q ss_pred CCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCCh------------------------------
Q 001524 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN------------------------------ 588 (1060)
Q Consensus 539 iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~------------------------------ 588 (1060)
||+..+.+++|+..+.+.+||||||||+||++.|||+|++|++..+|..+
T Consensus 328 IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h 407 (791)
T KOG1002|consen 328 IKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQH 407 (791)
T ss_pred cccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhh
Confidence 99999999999999999999999999999999999999999987765422
Q ss_pred -HHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHH
Q 001524 589 -KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQR 667 (1060)
Q Consensus 589 -~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~ 667 (1060)
.+|......||...... -.|.......+..++.+|+||++-.-.+ ...|||....+..-.++..+.
T Consensus 408 ~~~~n~~mlk~IqkfG~e-------GpGk~af~~~h~llk~ImlrrTkl~RAd------DLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 408 TCFFNHFMLKPIQKFGVE-------GPGKEAFNNIHTLLKNIMLRRTKLERAD------DLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred hhhhcccccccchhhccc-------CchHHHHHHHHHHHHHHHHHHhhccccc------ccCCCccceeeehhhhhhHHH
Confidence 11122222333332211 1345566678889999999999875433 345899888877788999999
Q ss_pred HHHHHHHhhHH----------HhhhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhhhccc----CC--ChHHHHHHHH-
Q 001524 668 QLYEAFLNSEI----------VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDS----ML--NPEDAALAEK- 730 (1060)
Q Consensus 668 ~lY~~~l~~~~----------~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~----~~--~~e~~~~~~~- 730 (1060)
.+|+.+..... ........++..+++|||+++||+|+.......+...... .+ ++....+...
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhh
Confidence 99998754321 1111224578899999999999999876433222211110 01 1111111000
Q ss_pred ---HHH-----HHhhh-------------------h-------hhhh---------hhhhcccccchHHHHHHHHHhhcc
Q 001524 731 ---LAM-----HIADV-------------------A-------EKDD---------FQEQHDNISCKISFILSLLDKLIP 767 (1060)
Q Consensus 731 ---l~~-----~~~~~-------------------~-------~~~~---------~~~~~~~~S~Kl~~L~~lL~~~~~ 767 (1060)
+.. .+... . .... ..-.....|.|+++|.+-|..+++
T Consensus 555 hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~ 634 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRE 634 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHH
Confidence 000 00000 0 0000 011123468999999999998876
Q ss_pred CC--CceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001524 768 EG--HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 768 ~g--~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 845 (1060)
.+ -|.||||||+.|||+|...|.+.|+.++.+.|+|+++.|...|+.|.++.++.|||+|.+|||+.|||+.|++|++
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 54 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-ccccCCHHHHHHHHc
Q 001524 846 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 920 (1060)
Q Consensus 846 ~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~ 920 (1060)
+||||||+...||.+|+|||||.|+|.|.||+.++|||++|.+.|..|..++.+.+++.+ ....++.+|++-||.
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999987654 566789999999985
No 13
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=7.7e-71 Score=626.23 Aligned_cols=532 Identities=31% Similarity=0.487 Sum_probs=430.2
Q ss_pred CcccccCccccCCCChHHHHHHHHHHHh---------hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc
Q 001524 383 RSTYMLPGKIGNMLFPHQREGLRWLWSL---------HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 453 (1060)
Q Consensus 383 ~~~~~lp~~l~~~L~phQ~egV~wl~~~---------~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~ 453 (1060)
...+.+.+.++..|.|||+-||+||+.. -..|.||||||.||||||+|+|+|+..++++..++++|+|+|.
T Consensus 242 ee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPi 321 (1387)
T KOG1016|consen 242 EEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPI 321 (1387)
T ss_pred CcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEeh
Confidence 4567788889999999999999999853 2457899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCC-----------cEEEEccccc---chhhHHHHHhhhCCCEEEeeHHHHHhcccc---------
Q 001524 454 TLLSHWIKELTAVGLSA-----------KIREYFGTCV---KTRQYELQYVLQDKGVLLTTYDIVRNNSKS--------- 510 (1060)
Q Consensus 454 sLl~qW~~E~~k~~~~~-----------~v~~~~g~~~---~~~~~~~~~~~~~~~VvItTy~~l~~~~~~--------- 510 (1060)
..+++|..||.+|.|.. .+.+ .+... ..|...+..|...++|+++.|++++-....
T Consensus 322 NTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~-LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpk 400 (1387)
T KOG1016|consen 322 NTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFL-LNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPK 400 (1387)
T ss_pred HHHHHHHHHhhhhcCCCcccCCCccceeEEEE-ecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCcc
Confidence 99999999999998862 1111 12211 234445566788999999999999754321
Q ss_pred --ccC--CCcccCcC-------------CCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHH
Q 001524 511 --LRG--SSFISDEA-------------GDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573 (1060)
Q Consensus 511 --l~~--~~~~~~~~-------------~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL 573 (1060)
++. ..++.+.. .+..-..|+|||||+|+|||..+.++.+++.|++++||.|||.|+|||+.|+
T Consensus 401 kt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEY 480 (1387)
T KOG1016|consen 401 KTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEY 480 (1387)
T ss_pred ccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHH
Confidence 000 00111110 1123457999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCcc
Q 001524 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKK 653 (1060)
Q Consensus 574 ~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k 653 (1060)
|+|++|++|..+|++.+|.+.|++||..|++.+.+.....++......|+.++..|+-||+...+ ...||.+
T Consensus 481 wCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvL--------k~~LP~k 552 (1387)
T KOG1016|consen 481 WCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVL--------KKILPEK 552 (1387)
T ss_pred hhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhH--------hhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999998765 4569999
Q ss_pred ceEEEEecCCHHHHHHHHHHHhhHHH---hhhc-CCChHHHHHHHHHHhcChhhhhhhhhhhhhh-------------hc
Q 001524 654 NEMIVWLRLTSCQRQLYEAFLNSEIV---LSAF-DGSPLAALTILKKICDHPLLLTKRAAEDVLD-------------GM 716 (1060)
Q Consensus 654 ~e~vv~~~ls~~Q~~lY~~~l~~~~~---~~~~-~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~-------------~~ 716 (1060)
.++++.++++..||++|+.|+..... ..+. .-++|.++..+.+|+|||..+..-....... +.
T Consensus 553 ~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~ 632 (1387)
T KOG1016|consen 553 KEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGL 632 (1387)
T ss_pred cceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcc
Confidence 99999999999999999999843222 1111 2368999999999999998775332221100 00
Q ss_pred cc-------CCChHHHHHHHHHHHHHhhhh---------------------------hhhhhhhhcccccchHHHHHHHH
Q 001524 717 DS-------MLNPEDAALAEKLAMHIADVA---------------------------EKDDFQEQHDNISCKISFILSLL 762 (1060)
Q Consensus 717 ~~-------~~~~e~~~~~~~l~~~~~~~~---------------------------~~~~~~~~~~~~S~Kl~~L~~lL 762 (1060)
.. ........++..+...+.... ....++......++|+..+++++
T Consensus 633 ~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~ 712 (1387)
T KOG1016|consen 633 QQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEIL 712 (1387)
T ss_pred cccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeee
Confidence 00 000000001111111110000 00112223333468888888888
Q ss_pred HhhccCCCceEEEeccHHHHHHHHHHHhhc------------------CCeEEEEECCCCHHHHHHHHHHhhcCCCcc-E
Q 001524 763 DKLIPEGHNVLIFSQTRKMLNLIQESIGSK------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAP-I 823 (1060)
Q Consensus 763 ~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~------------------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~-V 823 (1060)
.+-..-|.|+|||||....|++|+.+|.++ +..|.+++|.++..+|+++|++||...+.. .
T Consensus 713 des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWl 792 (1387)
T KOG1016|consen 713 DESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWL 792 (1387)
T ss_pred ccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceee
Confidence 888888999999999999999999999864 346899999999999999999999877644 8
Q ss_pred EEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc
Q 001524 824 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH 903 (1060)
Q Consensus 824 ~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~ 903 (1060)
||+||++|..|+||..|+++|+||..|||+.+.||++|+||+||+|+|+|||||+..++|.+||.||+.|++|...++++
T Consensus 793 fllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd 872 (1387)
T KOG1016|consen 793 FLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDD 872 (1387)
T ss_pred eeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHcCCC
Q 001524 904 KEQIRYFSQQDLRELLSLPK 923 (1060)
Q Consensus 904 ~~~~r~fs~~eL~eLf~~~~ 923 (1060)
-++.-.||+.|+..|+-+.+
T Consensus 873 ~np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 873 ANPDANISQKELENLLMYDE 892 (1387)
T ss_pred cCccccccHHHHHHHhhhhh
Confidence 99999999999999997654
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-69 Score=617.08 Aligned_cols=518 Identities=30% Similarity=0.453 Sum_probs=402.8
Q ss_pred ccCCCcccccCccccCCCChHHHHHHHHHHHhh-cCCCCeEEEcCCCCchHHHHHHHHHHHhhc--------cCCCceEE
Q 001524 379 LSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLH-CQGKGGILGDDMGLGKTMQICGFLAGLFHS--------RLIKRALV 449 (1060)
Q Consensus 379 l~~~~~~~~lp~~l~~~L~phQ~egV~wl~~~~-~~~~GgILaDemGLGKTlqaiali~~l~~~--------~~~k~vLI 449 (1060)
.+++..-+.-|..+...|+|||..|+.||.-.. ..+.||||||+||+|||+++|+++..-... ....++||
T Consensus 309 ~P~et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLI 388 (901)
T KOG4439|consen 309 IPGETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLI 388 (901)
T ss_pred CCCcccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEE
Confidence 344445566788899999999999999986544 456899999999999999999988765321 11236999
Q ss_pred EeCcccHHHHHHHHHHhcCC--CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCC
Q 001524 450 VAPKTLLSHWIKELTAVGLS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 527 (1060)
Q Consensus 450 V~P~sLl~qW~~E~~k~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~ 527 (1060)
|||.+|+.||..|+.+-.-. ..|..|||... +. .-...+..|+||||||+.+.+....-.. .......+..+.
T Consensus 389 I~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~--r~-i~~~~L~~YDvViTTY~lva~~~~~e~~--~~~~~spL~~I~ 463 (901)
T KOG4439|consen 389 ICPASLIHQWEAEVARRLEQNALSVYLYHGPNK--RE-ISAKELRKYDVVITTYNLVANKPDDELE--EGKNSSPLARIA 463 (901)
T ss_pred eCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc--cc-CCHHHHhhcceEEEeeeccccCCchhhh--cccCccHHHHhh
Confidence 99999999999999875443 35666777763 22 1233567899999999999873221110 111233445788
Q ss_pred ccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcch
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 607 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~ 607 (1060)
|.+||+||||.|||+.++...|++.|.+..|||||||||||++-|+|+|+.|++..+|++...|+.+...+-..+.
T Consensus 464 W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~---- 539 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGA---- 539 (901)
T ss_pred HHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccch----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765433222
Q ss_pred hhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhh------
Q 001524 608 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLS------ 681 (1060)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~------ 681 (1060)
.+|.-++++.||||||.......+ ...||.++..++.+.|+..+...|+-+........
T Consensus 540 ------------~rlnll~K~LmLRRTKdQl~a~~k---lv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~ 604 (901)
T KOG4439|consen 540 ------------NRLNLLTKSLMLRRTKDQLQANGK---LVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ 604 (901)
T ss_pred ------------hhhhhhhhhHHhhhhHHhhccccc---cccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 346667899999999998866433 44799999999999999999999987765422100
Q ss_pred --------hcC--------------------------------CChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCC
Q 001524 682 --------AFD--------------------------------GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLN 721 (1060)
Q Consensus 682 --------~~~--------------------------------~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~ 721 (1060)
.+. +.+|..|.+|||+|+||.+..................
T Consensus 605 ~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~s 684 (901)
T KOG4439|consen 605 REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDS 684 (901)
T ss_pred hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchh
Confidence 000 0137889999999999966543322222111111111
Q ss_pred hHHHHHHHHHHHHHhhhhh----hh-------hh---hhhcccccchHHHHHHHHHhh-ccCCCceEEEeccHHHHHHHH
Q 001524 722 PEDAALAEKLAMHIADVAE----KD-------DF---QEQHDNISCKISFILSLLDKL-IPEGHNVLIFSQTRKMLNLIQ 786 (1060)
Q Consensus 722 ~e~~~~~~~l~~~~~~~~~----~~-------~~---~~~~~~~S~Kl~~L~~lL~~~-~~~g~KvLIFsq~~~~ld~L~ 786 (1060)
.++......+.+ +..... .+ .+ .-.....|+|+..+++.++.+ ....+|++|.|||+.+|+++.
T Consensus 685 de~~~e~~~l~e-l~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 685 DEEQLEEDNLAE-LEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhHHHh-hhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 111111111111 100000 00 00 011234699999999999988 567899999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCC-ccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhh
Q 001524 787 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865 (1060)
Q Consensus 787 ~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~-~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~Ri 865 (1060)
..|...|+.|..++|....++|+.+|+.||.... .+|+|+|..+||+||||++|||+|++|.+|||+.+.||.+|+||+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998665 889999999999999999999999999999999999999999999
Q ss_pred CCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc--ccccCCHHHHHHHHcC
Q 001524 866 GQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE--QIRYFSQQDLRELLSL 921 (1060)
Q Consensus 866 GQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~--~~r~fs~~eL~eLf~~ 921 (1060)
||+++|+||||++.||+|++|...|..|..++..++.+.. ..+.++..+|+-||++
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFGL 901 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999997644 4788999999999974
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.1e-62 Score=623.24 Aligned_cols=492 Identities=37% Similarity=0.587 Sum_probs=409.7
Q ss_pred ccccCCCChHHHHHHHHHH-HhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccC--CCceEEEeCcccHHHHHHHHHHh
Q 001524 390 GKIGNMLFPHQREGLRWLW-SLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 390 ~~l~~~L~phQ~egV~wl~-~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~--~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
..+...|+|||.+|++|+. .+...+.||||||+||+|||+|+|+++...+.... .+++|||||.+++.+|..|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5667889999999999999 78888999999999999999999999988655544 47999999999999999999999
Q ss_pred cCCCc-EEEEcccccc--hhhHHHHHhhhC-----CCEEEeeHHHHHh---ccccccCCCcccCcCCCCCCCccEEEEcC
Q 001524 467 GLSAK-IREYFGTCVK--TRQYELQYVLQD-----KGVLLTTYDIVRN---NSKSLRGSSFISDEAGDDDAIWDYMILDE 535 (1060)
Q Consensus 467 ~~~~~-v~~~~g~~~~--~~~~~~~~~~~~-----~~VvItTy~~l~~---~~~~l~~~~~~~~~~~~~~~~wd~VIlDE 535 (1060)
.|..+ +..++|.... .+...+...... +++++|||+.++. .... +....|+++|+||
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~------------l~~~~~~~~v~DE 480 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGG------------LKKIEWDRVVLDE 480 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHH------------Hhhceeeeeehhh
Confidence 99999 8888887642 122223333332 7999999999998 4333 3467799999999
Q ss_pred CCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHh-hhCCCCCC-ChHHHHHHhhcccccCCCcchhhHHHH
Q 001524 536 GHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN-FCCPELLG-DNKWFKEKYELPILRGNDKHALDREKR 613 (1060)
Q Consensus 536 AH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~-fl~p~~l~-~~~~F~~~f~~pi~~~~~~~~~~~~~~ 613 (1060)
||+|||..+..+++++.+++.+|++|||||++|++.|||++++ |++|+.++ +...|..+|..|+........ ..
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~ 556 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LE 556 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hh
Confidence 9999999999999999999999999999999999999999999 99999999 558999999999887766443 11
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhc--ccccCccccccccCccceEEEEecCCHHHHHHHHHHHh---hHH--Hhh---hc
Q 001524 614 IGSAVAKELRERIQPYFLRRLKNE--VFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEI--VLS---AF 683 (1060)
Q Consensus 614 ~~~~~~~~L~~~l~p~~LRR~k~d--v~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~---~~~--~~~---~~ 683 (1060)
........|+..++||++||++.+ ++ ..||++.+.+++|.++..|+.+|..++. ... +.. ..
T Consensus 557 ~~~~~~~~l~~~i~~f~lrr~k~~~~v~--------~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~ 628 (866)
T COG0553 557 ARELGIELLRKLLSPFILRRTKEDVEVL--------KELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKAD 628 (866)
T ss_pred hHHHHHHHHHHHHHHHhhcccccchhHH--------HhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222344558999999999999999 53 3599999999999999999999999988 322 111 11
Q ss_pred ---------CCChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhccccc-c
Q 001524 684 ---------DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNIS-C 753 (1060)
Q Consensus 684 ---------~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S-~ 753 (1060)
....+..++.||++|+||.++..... ............. .............+ +
T Consensus 629 ~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~--------~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~ 692 (866)
T COG0553 629 SDENRIGDSELNILALLTRLRQICNHPALVDEGLE--------ATFDRIVLLLRED--------KDFDYLKKPLIQLSKG 692 (866)
T ss_pred cccccccchhhHHHHHHHHHHHhccCccccccccc--------cccchhhhhhhcc--------cccccccchhhhccch
Confidence 33567889999999999999875420 0000000000000 00001111122346 8
Q ss_pred hHHHHHHHH-HhhccCCC--ceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 754 KISFILSLL-DKLIPEGH--NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 754 Kl~~L~~lL-~~~~~~g~--KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
|+..+.++| .....+|+ |+|||+|++.++++|...|...++.+++++|+++...|+.+|++|++++..+||++++++
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 999999999 78889999 999999999999999999999999999999999999999999999999878999999999
Q ss_pred cccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc--ccccc
Q 001524 831 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH--KEQIR 908 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~--~~~~r 908 (1060)
||.||||+.|++||+|||+|||+.+.||++|+||+||+++|.||++++.+|+||+|+.+|..|..+...+++. .....
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~ 852 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELS 852 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 45566
Q ss_pred cCCHHHHHHHHcC
Q 001524 909 YFSQQDLRELLSL 921 (1060)
Q Consensus 909 ~fs~~eL~eLf~~ 921 (1060)
.++.+++..||..
T Consensus 853 ~~~~~~~~~l~~~ 865 (866)
T COG0553 853 KLSIEDLLDLFSL 865 (866)
T ss_pred hccHHHHHHHhcc
Confidence 7888999988864
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-55 Score=485.54 Aligned_cols=433 Identities=24% Similarity=0.313 Sum_probs=340.9
Q ss_pred ccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 387 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 387 ~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
.+|+.+...|.|||++||.|.++ +|+.+||||+||||||+|||+++.++. ..+|.|||||.++...|.++|.+|
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyr---aEwplliVcPAsvrftWa~al~r~ 263 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYR---AEWPLLIVCPASVRFTWAKALNRF 263 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHh---hcCcEEEEecHHHhHHHHHHHHHh
Confidence 35788999999999999999887 577789999999999999999887664 347999999999999999999999
Q ss_pred cCCCcE-EEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH
Q 001524 467 GLSAKI-REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 545 (1060)
Q Consensus 467 ~~~~~v-~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk 545 (1060)
.|.... .+..+.... ...+.....|.|++|+++......+. ...|.+||+||+|.+|+..++
T Consensus 264 lps~~pi~vv~~~~D~-----~~~~~t~~~v~ivSye~ls~l~~~l~------------~~~~~vvI~DEsH~Lk~sktk 326 (689)
T KOG1000|consen 264 LPSIHPIFVVDKSSDP-----LPDVCTSNTVAIVSYEQLSLLHDILK------------KEKYRVVIFDESHMLKDSKTK 326 (689)
T ss_pred cccccceEEEecccCC-----ccccccCCeEEEEEHHHHHHHHHHHh------------cccceEEEEechhhhhccchh
Confidence 987654 233232211 11222345799999999988776554 345999999999999999999
Q ss_pred HHHHHHcC--CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 546 RAKSLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 546 ~~kal~~l--~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
+.+++.-+ .+.|.|+|||||...++.|||.++..+.+.+|....+|...|+.--..+... ...|..+..+|+
T Consensus 327 r~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~------Dykg~tnl~EL~ 400 (689)
T KOG1000|consen 327 RTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF------DYKGCTNLEELA 400 (689)
T ss_pred hhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee------ecCCCCCHHHHH
Confidence 99998876 6789999999999999999999999999999999999999998643222211 122344567787
Q ss_pred HHhh-HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001524 624 ERIQ-PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 702 (1060)
Q Consensus 624 ~~l~-p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 702 (1060)
.++. ..|+||+|.+|+. +||+|...++++- ...+-.....++....... .... +.- +|-.
T Consensus 401 ~lL~k~lMIRRlK~dvL~--------qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t-----~~~~-~e~----~~~~ 461 (689)
T KOG1000|consen 401 ALLFKRLMIRRLKADVLK--------QLPPKRREVVYVS-GGRIDARMDDLVKAAADYT-----KVNS-MER----KHES 461 (689)
T ss_pred HHHHHHHHHHHHHHHHHh--------hCCccceEEEEEc-CCccchHHHHHHHHhhhcc-----hhhh-hhh----hhHH
Confidence 7775 4689999999965 5999966665543 3333222222222111000 0000 000 0000
Q ss_pred hhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHh----hccCCCceEEEecc
Q 001524 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK----LIPEGHNVLIFSQT 778 (1060)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~----~~~~g~KvLIFsq~ 778 (1060)
++. .. ....-.|+..+.+.|.. ..+.+.|++||+++
T Consensus 462 l~l----------------------------~y------------~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 462 LLL----------------------------FY------------SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred HHH----------------------------HH------------HHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 000 00 00124577777777776 44678999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhh
Q 001524 779 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858 (1060)
Q Consensus 779 ~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QA 858 (1060)
..++|-|+..+..+++.++||||+++...|+.+++.||.++...|-+++..|+|+||+|++|+.|++.+.+|||....||
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 001524 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI 907 (1060)
Q Consensus 859 iGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~~ 907 (1060)
.+|+||+||+..|.||+|+++||++|.+|.....|...+..+..++.+.
T Consensus 582 EDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~~ 630 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDTF 630 (689)
T ss_pred hhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcccc
Confidence 9999999999999999999999999999999999999988877665543
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.1e-54 Score=534.72 Aligned_cols=441 Identities=18% Similarity=0.262 Sum_probs=318.3
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCC
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~ 470 (1060)
.....|+|||..++.++... ...++||||+||||||++|++++..++..+..+|+|||||.+|+.||..|+.+++. .
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~-l 224 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFN-L 224 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhC-C
Confidence 35667999999999877553 35688999999999999999999998888888999999999999999999976432 2
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc---chHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP---STQRA 547 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~---~sk~~ 547 (1060)
...++.+.............+..++++|+||+.++.+...... +....|++|||||||+++|. .++.+
T Consensus 225 ~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~---------l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 225 RFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQ---------ALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred CeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHH---------HhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 2333332211100000001223578999999999875432111 12456999999999999953 46678
Q ss_pred HHHHcC--CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhc--cc-------ccCCCcchhhHH---HH
Q 001524 548 KSLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL--PI-------LRGNDKHALDRE---KR 613 (1060)
Q Consensus 548 kal~~l--~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~--pi-------~~~~~~~~~~~~---~~ 613 (1060)
+++..+ .++++++|||||+||++.|+|++++|++|+.|++...|...++. |+ ..+......... ..
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 888877 57799999999999999999999999999999999999876543 21 111110000000 00
Q ss_pred h----------------------hHHHHHHHHHH--hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHH
Q 001524 614 I----------------------GSAVAKELRER--IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQL 669 (1060)
Q Consensus 614 ~----------------------~~~~~~~L~~~--l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~l 669 (1060)
. ..+.+..|... ..++|+|+++..|. .+|.+....+.+++++..+..
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~---------~fp~R~~~~~~l~~~~~y~~~ 446 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK---------GFPKRELHPIPLPLPEQYQTA 446 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---------CCCcCceeEeecCCCHHHHHH
Confidence 0 00011111110 12456677776653 378888888888887643332
Q ss_pred HHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001524 670 YEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHD 749 (1060)
Q Consensus 670 Y~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 749 (1060)
+.. .. ...+++ +.+|..+.. .+.. .....
T Consensus 447 ~~~----~~------------~~~~~~-~l~pe~~~~---------------------------~~~~-------~~~~~ 475 (956)
T PRK04914 447 IKV----SL------------EARARD-MLYPEQIYQ---------------------------EFED-------NATWW 475 (956)
T ss_pred HHH----hH------------HHHHHh-hcCHHHHHH---------------------------HHhh-------hhhcc
Confidence 221 00 011111 122211100 0000 00122
Q ss_pred cccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHH-hhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEec
Q 001524 750 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI-GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828 (1060)
Q Consensus 750 ~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L-~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST 828 (1060)
..++|+..|.++|+.. .++|+||||+++.+++.|...| ...|++++.|||+|++.+|.++++.|++++....+|++|
T Consensus 476 ~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 476 NFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred ccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 3578999999999876 4789999999999999999999 567999999999999999999999999865333467888
Q ss_pred CCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 001524 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 905 (1060)
Q Consensus 829 ~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~ 905 (1060)
.+||+|+|++.|++||+||+||||..+.||+||+||+||+++|.||.++..+|++++|++....|.++++..+....
T Consensus 554 dvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 554 EIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred hhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887765443
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.8e-52 Score=500.41 Aligned_cols=470 Identities=31% Similarity=0.408 Sum_probs=365.5
Q ss_pred HHHHHHHHHHh---hcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-------CCCceEEEeCcccHHHHHHHHHHhcCC
Q 001524 400 QREGLRWLWSL---HCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------LIKRALVVAPKTLLSHWIKELTAVGLS 469 (1060)
Q Consensus 400 Q~egV~wl~~~---~~~~~GgILaDemGLGKTlqaiali~~l~~~~-------~~k~vLIV~P~sLl~qW~~E~~k~~~~ 469 (1060)
|.....|++.. ...-+|||+||+||+|||+++++++....... ..+.+|||||.+++.||..|+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 55555666543 23347999999999999999999887654322 456899999999999999999776655
Q ss_pred Cc--EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHH
Q 001524 470 AK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 547 (1060)
Q Consensus 470 ~~--v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~ 547 (1060)
.+ +.+|+| ... ....+..++||||||+++.+. .+..+.|-+||+||||.|+|.+++.+
T Consensus 215 ~~l~v~v~~g--r~k----d~~el~~~dVVltTy~il~~~--------------~l~~i~w~Riildea~~ikn~~tq~~ 274 (674)
T KOG1001|consen 215 DKLSIYVYHG--RTK----DKSELNSYDVVLTTYDILKNS--------------PLVKIKWLRIVLDEAHTIKNKDTQIF 274 (674)
T ss_pred cceEEEEecc--ccc----ccchhcCCceEEeeHHHhhcc--------------cccceeEEEEEeccccccCCcchHhh
Confidence 44 445565 111 122346789999999999861 12357799999999999999999999
Q ss_pred HHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 548 KSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 548 kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
+++..+.+.+||+|||||+||++.|+|+++.|+.-.++.....|...+..|+..+.. ......++..++
T Consensus 275 ~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~ 343 (674)
T KOG1001|consen 275 KAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILK 343 (674)
T ss_pred hhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877664 234567888999
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhh----------cCCChHHHHHHHHHH
Q 001524 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA----------FDGSPLAALTILKKI 697 (1060)
Q Consensus 628 p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~----------~~~~~l~~l~~Lrki 697 (1060)
++++||+|..-+.. .....||++...++++.++..++.+|..+.......-. .....+..+.+|||+
T Consensus 344 ~v~lrrtK~~~~~g---k~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~ 420 (674)
T KOG1001|consen 344 KVMLRRTKEMEVDG---KPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQA 420 (674)
T ss_pred HHHhcccccccccC---ccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHH
Confidence 99999999866542 22457999999999999999999999998765432211 113357788899999
Q ss_pred hcChhhhhhhhhhhhhhhccc------------------CCChHH--------HHHHHHHHHHHhh------------hh
Q 001524 698 CDHPLLLTKRAAEDVLDGMDS------------------MLNPED--------AALAEKLAMHIAD------------VA 739 (1060)
Q Consensus 698 c~hP~L~~~~~~~~~~~~~~~------------------~~~~e~--------~~~~~~l~~~~~~------------~~ 739 (1060)
|+||.++..........+... ...++. ....+-+...+.. ..
T Consensus 421 c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 421 CDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred ccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 999998764322111111000 000000 0000000000000 00
Q ss_pred hhhhhhh--------hcccccchHHHHHHHHHhhccCCC-ceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHH
Q 001524 740 EKDDFQE--------QHDNISCKISFILSLLDKLIPEGH-NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810 (1060)
Q Consensus 740 ~~~~~~~--------~~~~~S~Kl~~L~~lL~~~~~~g~-KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~ 810 (1060)
....+.. .....|.|+..++.+|........ ++|||||++.+++++...|...++.+.+++|.|+...|.+
T Consensus 501 ~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~ 580 (674)
T KOG1001|consen 501 EKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTK 580 (674)
T ss_pred HHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHh
Confidence 0000000 011147788888888885544444 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHH
Q 001524 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 890 (1060)
Q Consensus 811 iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq 890 (1060)
.+..|..++...|+++|.+|||.||||+.|++|+++||+|||+.+.||++|+||+||+++|.|+||++.+|+||+|...|
T Consensus 581 s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 581 SFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 001524 891 IFKGGLFKTATEH 903 (1060)
Q Consensus 891 ~~K~~l~~~~~~~ 903 (1060)
.+|..+.+.+.+.
T Consensus 661 ~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 661 EKKREYNASAFGE 673 (674)
T ss_pred HHHHHHHhhhccC
Confidence 9999998887653
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=419.45 Aligned_cols=378 Identities=33% Similarity=0.507 Sum_probs=317.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCC-CceEEEeCcccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI-KRALVVAPKTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~-k~vLIV~P~sLl~qW~~E~~k~~~~~~v 472 (1060)
..|.|||.+|++|+...+..+..+||||+||+|||+|++.|+..++..... +|.|+++|.+.+.+|..|+..|.|...+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 789999999999999999999999999999999999999999988776544 7999999999999999999999999999
Q ss_pred EEEcccccchhhHHH----------------H----HhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEE
Q 001524 473 REYFGTCVKTRQYEL----------------Q----YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMI 532 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~----------------~----~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VI 532 (1060)
..|.|.......... . ...-.+.|.+++|.+.......+ ..+.|.++|
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il------------~~v~w~~li 441 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSIL------------FSVQWGLLI 441 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHH------------hhhhcceeE
Confidence 999887643211000 0 01124678899998887765544 467799999
Q ss_pred EcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHH
Q 001524 533 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612 (1060)
Q Consensus 533 lDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 612 (1060)
+||+|+++|..+++.+.+...+..++++|||||.||++.+|+++|+|+.|+.+++..+|.+.|...
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~-------------- 507 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI-------------- 507 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh--------------
Confidence 999999999999999999999999999999999999999999999999999999999999888642
Q ss_pred HhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhc---CCChHH
Q 001524 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF---DGSPLA 689 (1060)
Q Consensus 613 ~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~---~~~~l~ 689 (1060)
.-...+..|+.++.|+|+||.+.+|+++ +|.|++.++.+.|++.|+++|..++..+...... .-+.+.
T Consensus 508 -~~~~~~~~l~~l~~p~~lrr~k~d~l~~--------~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n 578 (696)
T KOG0383|consen 508 -SCEEQIKKLHLLLCPHMLRRLKLDVLKP--------MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLN 578 (696)
T ss_pred -hHHHHHHhhccccCchhhhhhhhhhccC--------CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHH
Confidence 1234678899999999999999999763 8999999999999999999999998764322211 123568
Q ss_pred HHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCC
Q 001524 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 769 (1060)
Q Consensus 690 ~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g 769 (1060)
+++.|||+|+||+++...... ....... .......++|+..|..++++++..|
T Consensus 579 ~~mel~K~~~hpy~~~~~e~~----------~~~~~~~-----------------~~~l~k~~~k~~~l~~~~~~l~~~g 631 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLEEPL----------EENGEYL-----------------GSALIKASGKLTLLLKMLKKLKSSG 631 (696)
T ss_pred HHHHHHHhhcCcccCcccccc----------ccchHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999998651110 0000000 1112236899999999999999999
Q ss_pred CceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhc-CCCccEEEEecCCcccc
Q 001524 770 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLG 834 (1060)
Q Consensus 770 ~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~-~~~~~V~LlST~agg~G 834 (1060)
|||+||+|++.++|+++.++...+ .|.|++|..+..+|+.+|++||. +...++||+||++||+|
T Consensus 632 hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 632 HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999999999999999999 99999999999999999999995 56788999999999998
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-38 Score=384.55 Aligned_cols=353 Identities=19% Similarity=0.275 Sum_probs=251.8
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc-ccHHHHHHHHHHhcC--C
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL--S 469 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~-sLl~qW~~E~~k~~~--~ 469 (1060)
...|||||.+++.+++.. ...++|||+++||+|||+++++++..+ .+++|||||. .++.||.++|.+|.. .
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 467999999999998751 123589999999999999999888765 3789999995 568999999999963 3
Q ss_pred CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHH
Q 001524 470 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 549 (1060)
Q Consensus 470 ~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~ka 549 (1060)
..+..+.|.... . .....+|+|+||+++.+........ ......+....|++||+||||++. .....+.
T Consensus 327 ~~I~~~tg~~k~-~------~~~~~~VvVtTYq~l~~~~~r~~~~--~~~l~~l~~~~~gLII~DEvH~lp--A~~fr~i 395 (732)
T TIGR00603 327 SQICRFTSDAKE-R------FHGEAGVVVSTYSMVAHTGKRSYES--EKVMEWLTNREWGLILLDEVHVVP--AAMFRRV 395 (732)
T ss_pred ceEEEEecCccc-c------cccCCcEEEEEHHHhhcccccchhh--hHHHHHhccccCCEEEEEcccccc--HHHHHHH
Confidence 445555553211 1 1235789999999997543221100 000111234579999999999994 3445557
Q ss_pred HHcCCCCceEEeecCCCCCCHHHHHHHHhhh-CCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhH
Q 001524 550 LLEIPSAHRIIISGTPIQNNLKELWALFNFC-CPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628 (1060)
Q Consensus 550 l~~l~a~~RilLTGTPiqN~l~EL~sLl~fl-~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p 628 (1060)
+..+.+.+||+|||||++++ +.+..+.++ .|..+. .. +.
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye-~~--------------------------------~~----- 435 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-AN--------------------------------WM----- 435 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee-cC--------------------------------HH-----
Confidence 77789999999999999876 234444433 332211 00 00
Q ss_pred HHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhh
Q 001524 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA 708 (1060)
Q Consensus 629 ~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~ 708 (1060)
+... ...|.+.....|||+|++.....| +..... .+.. +.
T Consensus 436 --------eLi~------~G~LA~~~~~ev~v~~t~~~~~~y---l~~~~~--------------~k~~-----l~---- 475 (732)
T TIGR00603 436 --------ELQK------KGFIANVQCAEVWCPMTPEFYREY---LRENSR--------------KRML-----LY---- 475 (732)
T ss_pred --------HHHh------CCccccceEEEEEecCCHHHHHHH---HHhcch--------------hhhH-----Hh----
Confidence 0000 123555566779999998653333 321100 0000 00
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHH
Q 001524 709 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788 (1060)
Q Consensus 709 ~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~ 788 (1060)
.....|+..+..++..+...|+|+||||+++..+..+...
T Consensus 476 ----------------------------------------~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~ 515 (732)
T TIGR00603 476 ----------------------------------------VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIK 515 (732)
T ss_pred ----------------------------------------hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHH
Confidence 0023588888888887767899999999999998888887
Q ss_pred HhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCC-CchhhhhhhhhhhhhCC
Q 001524 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW-NPSTDNQSVDRAYRIGQ 867 (1060)
Q Consensus 789 L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W-Np~~~~QAiGRa~RiGQ 867 (1060)
|. +..|+|.|+..+|.+++++|+.++...+ |+++++|++|||++.|++||++++++ |+..++||+||+.|.+.
T Consensus 516 L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 516 LG-----KPFIYGPTSQQERMQILQNFQHNPKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred cC-----CceEECCCCHHHHHHHHHHHHhCCCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 73 3558999999999999999997754444 55569999999999999999999986 99999999999999987
Q ss_pred cCc-----EEEEEEecCCCHHHHHHH
Q 001524 868 KKD-----VVVYRLMTCGTVEEKIYR 888 (1060)
Q Consensus 868 ~k~-----V~VyrLvt~gTiEE~I~~ 888 (1060)
.+. +++|.|++.+|.|+..-.
T Consensus 590 ~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 590 GSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCccccccceEEEEecCCchHHHHHH
Confidence 654 789999999999988753
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.3e-39 Score=363.25 Aligned_cols=272 Identities=32% Similarity=0.558 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCC---ceEEEeCcccHHHHHHHHHHh
Q 001524 399 HQREGLRWLWSLH---------CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK---RALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 399 hQ~egV~wl~~~~---------~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k---~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
||+.||.||+.++ ...+||||||+||+|||+++++++..+....... ++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7779999999999999999999999776655443 699999999999999999999
Q ss_pred cC--CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHH-----hccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 467 GL--SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVR-----NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 467 ~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~-----~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
++ ..++..+.+... ...........++|+|+||+.+. .....+ ....|++||+||||.+
T Consensus 81 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l------------~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSE--RRRLSKNQLPKYDVVITTYETLRKARKKKDKEDL------------KQIKWDRVIVDEAHRL 146 (299)
T ss_dssp SGT-TS-EEEESSSCH--HHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHH------------HTSEEEEEEETTGGGG
T ss_pred cccccccccccccccc--cccccccccccceeeecccccccccccccccccc------------ccccceeEEEeccccc
Confidence 84 466777766651 11112223457899999999999 222222 2356999999999999
Q ss_pred CCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 540 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 540 KN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
||..+.+++++..+.+.++|+|||||++|++.|+|++++|+.|..+.....|.+.|..+ .........
T Consensus 147 k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~ 214 (299)
T PF00176_consen 147 KNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENI 214 (299)
T ss_dssp TTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHH
T ss_pred ccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998765 223345567
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcC--------CChHHHH
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD--------GSPLAAL 691 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~--------~~~l~~l 691 (1060)
..|...++++++||++.++ ...+|+..+.++.++|++.|+.+|+.+........... ...+..+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~--------~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDV--------EKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQIL 286 (299)
T ss_dssp HHHHHHHCCCEECHCGGGG--------CTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccc--------cccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 8899999999999999988 23599999999999999999999999887654322111 2357888
Q ss_pred HHHHHHhcChhhh
Q 001524 692 TILKKICDHPLLL 704 (1060)
Q Consensus 692 ~~Lrkic~hP~L~ 704 (1060)
.+|||+|+||.|+
T Consensus 287 ~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 287 KRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHH-THHC
T ss_pred HHHHHHhCCcccC
Confidence 9999999999874
No 22
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-35 Score=331.89 Aligned_cols=460 Identities=20% Similarity=0.172 Sum_probs=292.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc--CCC
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG--LSA 470 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~--~~~ 470 (1060)
...|.||...+...+. ++++++.|||||||++|+.+++..+.+... ++|+++| +.|+.|...-|.++. |..
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 3568899988877776 699999999999999999999998888865 9999999 899999999998874 557
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch--HHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST--QRAK 548 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s--k~~k 548 (1060)
.+..+.|.....++. ..|....|++.||+++.++..... ++...+.+||+||||+.-+.++ .+++
T Consensus 88 ~i~~ltGev~p~~R~---~~w~~~kVfvaTPQvveNDl~~Gr----------id~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 88 EIAALTGEVRPEERE---ELWAKKKVFVATPQVVENDLKAGR----------IDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred heeeecCCCChHHHH---HHHhhCCEEEeccHHHHhHHhcCc----------cChHHceEEEechhhhccCcchHHHHHH
Confidence 778888866554332 356788999999999999886543 3456689999999999977665 4455
Q ss_pred HHHcCCCC-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHH---HHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001524 549 SLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKW---FKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624 (1060)
Q Consensus 549 al~~l~a~-~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~---F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (1060)
......++ +.++|||||- ++...+...+.-|..+...-..+ --..|...+.....+-..+. ........|..
T Consensus 155 ~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~---e~~~ir~~l~~ 230 (542)
T COG1111 155 EYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPE---EIKEIRDLLRD 230 (542)
T ss_pred HHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcH---HHHHHHHHHHH
Confidence 55555555 5678999994 66777777777665543211111 11122221111111111111 11122333444
Q ss_pred HhhHHHHHhhhhcccccCccccccccCccceEEEEecCC-HHHHHHHHHHHhhHHHhhhc-CCChHHHHHHHHH--HhcC
Q 001524 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT-SCQRQLYEAFLNSEIVLSAF-DGSPLAALTILKK--ICDH 700 (1060)
Q Consensus 625 ~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls-~~Q~~lY~~~l~~~~~~~~~-~~~~l~~l~~Lrk--ic~h 700 (1060)
.++|.+ ..++..- +...-+ -.++.+.... ......+.. .+..+.++..+-. -+.|
T Consensus 231 ~l~~~L-k~L~~~g-------------------~~~~~~~~~~kdl~~~~-~~~~~~a~~~~~~~~~~l~~~a~~~kl~~ 289 (542)
T COG1111 231 ALKPRL-KPLKELG-------------------VIESSSPVSKKDLLELR-QIRLIMAKNEDSDKFRLLSVLAEAIKLAH 289 (542)
T ss_pred HHHHHH-HHHHHcC-------------------ceeccCcccHhHHHHHH-HHHHHhccCccHHHHHHHHHHHHHHHHHH
Confidence 444432 1122111 111111 1233333332 111111111 1112222211111 1222
Q ss_pred hh-hhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhh-----hhhhcccccchHHHHHHHHHhhc--cCCCce
Q 001524 701 PL-LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD-----FQEQHDNISCKISFILSLLDKLI--PEGHNV 772 (1060)
Q Consensus 701 P~-L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~S~Kl~~L~~lL~~~~--~~g~Kv 772 (1060)
+. ++..+........+..+...............+.+...... ......-..+|+..+.+++.+.. ..+.|+
T Consensus 290 a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 290 ALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 21 11111111111111100000000000000000000000000 01122235899999999999987 567899
Q ss_pred EEEeccHHHHHHHHHHHhhcCCeEE-EEEC--------CCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEE
Q 001524 773 LIFSQTRKMLNLIQESIGSKGYKFL-RIDG--------TTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRV 843 (1060)
Q Consensus 773 LIFsq~~~~ld~L~~~L~~~gi~~~-ridG--------~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~V 843 (1060)
|||++|+.+++.|..+|...|+... ++-| +|+++++.++|++|+.|... +|++|.+|.+|||++.++.|
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n--VLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN--VLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce--EEEEcccccccCCCCcccEE
Confidence 9999999999999999999988775 6666 59999999999999999855 99999999999999999999
Q ss_pred EEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Q 001524 844 IVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902 (1060)
Q Consensus 844 Ii~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~ 902 (1060)
|||||.-+|...+||+||++| ++.-.||-|+++||-+|..|....+|.+.+...+.
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 47778899999999999999999988776665543
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.7e-36 Score=376.25 Aligned_cols=464 Identities=17% Similarity=0.130 Sum_probs=284.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC--C
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS--A 470 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~--~ 470 (1060)
..+|+||.+.+..++. +++|++++||+|||++++.++..++. ...+++||||| ..|+.||..++.++... .
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 3679999998887766 48999999999999998888877763 45689999999 58999999999987533 3
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 550 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal 550 (1060)
.+..+.|...... ....+..++|+|+||+.+.++..... .....|++||+||||++.+..+..+.+-
T Consensus 88 ~v~~~~g~~~~~~---r~~~~~~~~iiv~T~~~l~~~l~~~~----------~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 88 KIVVFTGEVSPEK---RAELWEKAKVIVATPQVIENDLIAGR----------ISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred eEEEEeCCCCHHH---HHHHHhCCCEEEECHHHHHHHHHcCC----------CChhhCcEEEEECCccccccccHHHHHH
Confidence 5666666543322 22345678999999999987643211 1234689999999999987655433222
Q ss_pred Hc---CCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 551 LE---IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 551 ~~---l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
.. .+..++++|||||.++ ...+..++..+....+..+..|.......+........ ..........++..+.
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~----~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV----RVELPEELKEIRDLLN 229 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE----EeCCcHHHHHHHHHHH
Confidence 22 2345689999999875 56666666655443222222111111111110000000 0011223456777788
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001524 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707 (1060)
Q Consensus 628 p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~ 707 (1060)
.++.++.+...-.. ..++....+....+...+..++..+..... ........+..+..+++ ...++...
T Consensus 230 ~~~~~~l~~l~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~---~~~~l~~~ 298 (773)
T PRK13766 230 EALKDRLKKLKELG-------VIVSISPDVSKKELLGLQKKLQQEIANDDS-EGYEAISILAEAMKLRH---AVELLETQ 298 (773)
T ss_pred HHHHHHHHHHHHCC-------CcccCCCCcCHHHHHHHHHHHHHHhhcCch-HHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 88777765432110 111111111112223333333333221100 00000001111122222 11111111
Q ss_pred hhhhhh---hhcccCC-ChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhc--cCCCceEEEeccHHH
Q 001524 708 AAEDVL---DGMDSML-NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKM 781 (1060)
Q Consensus 708 ~~~~~~---~~~~~~~-~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~--~~g~KvLIFsq~~~~ 781 (1060)
...... ..+.... ..........+..... ..............++|+..|.++|.++. ..+.|+||||+++.+
T Consensus 299 ~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t 377 (773)
T PRK13766 299 GVEALRRYLERLREEARSSGGSKASKRLVEDPR-FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDT 377 (773)
T ss_pred CHHHHHHHHHHHHhhccccCCcHHHHHHHhCHH-HHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHH
Confidence 000000 0000000 0000000000000000 00000001112235789999999999876 578899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECC--------CCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCch
Q 001524 782 LNLIQESIGSKGYKFLRIDGT--------TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853 (1060)
Q Consensus 782 ld~L~~~L~~~gi~~~ridG~--------~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~ 853 (1060)
++.|...|...|+++.+++|. +++.+|.+++.+|+++... +|++|.++++|+|++.+++||+|||+||+.
T Consensus 378 ~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~--vLvaT~~~~eGldi~~~~~VI~yd~~~s~~ 455 (773)
T PRK13766 378 AEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN--VLVSTSVAEEGLDIPSVDLVIFYEPVPSEI 455 (773)
T ss_pred HHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 999999999999999999997 8889999999999998644 788999999999999999999999999999
Q ss_pred hhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 001524 854 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 898 (1060)
Q Consensus 854 ~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~ 898 (1060)
.+.|++||++|.|+ +.||.|++.+|.||.+|.....|...+.
T Consensus 456 r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~ 497 (773)
T PRK13766 456 RSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMK 497 (773)
T ss_pred HHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHH
Confidence 99999999888776 6789999999999999988777766653
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=5.3e-34 Score=344.87 Aligned_cols=268 Identities=24% Similarity=0.320 Sum_probs=201.3
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhc----------------cCCCceEEEeCcccHHHHHHHHHHhcCCC-cEEEEc
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHS----------------RLIKRALVVAPKTLLSHWIKELTAVGLSA-KIREYF 476 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~----------------~~~k~vLIV~P~sLl~qW~~E~~k~~~~~-~v~~~~ 476 (1060)
|+.++++++||+|||+..++........ ...|.+|||||.+++.||..||.++++.. ++..|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 4456999999999999877655433211 12478999999999999999999999888 888888
Q ss_pred ccccchhhHHHHHhhhCCCEEEeeHHHHHhcccccc----------CCCcccCcCCCCCCCccEEEEcCCCcCCCcchHH
Q 001524 477 GTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLR----------GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546 (1060)
Q Consensus 477 g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----------~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~ 546 (1060)
|-........ ..+..||||+|||+.+++..-.-. ..+++.-..++....|++||+|||+.+....|..
T Consensus 454 Girk~~~~~~--~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~ 531 (1394)
T KOG0298|consen 454 GIRKTFWLSP--FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAA 531 (1394)
T ss_pred chhhhcccCc--hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHH
Confidence 8643322111 345689999999999987653321 1122223344556789999999999999999999
Q ss_pred HHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001524 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 626 (1060)
Q Consensus 547 ~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l 626 (1060)
++.++.|++.++|+.||||+|+ +.+|+.|+.|+.-.+|+..++|.+....++... +....+.++.
T Consensus 532 a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~dl~ 596 (1394)
T KOG0298|consen 532 AEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLLDLF 596 (1394)
T ss_pred HHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHHHHH
Confidence 9999999999999999999999 999999999999999999999987776544332 2345577778
Q ss_pred hHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHh----hH-----HHh-hhcC------------
Q 001524 627 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN----SE-----IVL-SAFD------------ 684 (1060)
Q Consensus 627 ~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~----~~-----~~~-~~~~------------ 684 (1060)
...+-|+.+..|..+ ..+|+..+.+.+..+++.+..+|+.... .. ... ....
T Consensus 597 ~q~l~R~~k~~v~~e------l~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 597 KQLLWRTFKSKVEHE------LGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred HhhhhhhhhHHHHHH------hCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 888899999888764 4689998888899999888888765311 10 001 0011
Q ss_pred -CChHHHHHHHHHHhcChhhh
Q 001524 685 -GSPLAALTILKKICDHPLLL 704 (1060)
Q Consensus 685 -~~~l~~l~~Lrkic~hP~L~ 704 (1060)
...+..+.+|||+|+||...
T Consensus 671 ~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHHHHHHhhcccccc
Confidence 11355678899999999753
No 25
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=300.86 Aligned_cols=462 Identities=18% Similarity=0.214 Sum_probs=281.2
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
...||+||.+.++-.+ ++++|+|.|||+|||++|+.+|..++++.+.+++++++| ..|+.|....|..++.+..
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 3469999999886654 599999999999999999999999999999999999999 7788888888888876655
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC--cchHHHHH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PSTQRAKS 549 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~sk~~ka 549 (1060)
+....+......... .++...+|++.|++++.++........ -..|.++|+||||+... +++.+.+.
T Consensus 135 ~T~~l~~~~~~~~r~--~i~~s~~vff~TpQil~ndL~~~~~~~---------ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRG--EIVASKRVFFRTPQILENDLKSGLHDE---------LSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred ceeeccCccCCCchh--hhhcccceEEeChHhhhhhcccccccc---------cceEEEEEEcccccccccccHHHHHHH
Confidence 555555543333322 467788999999999999887554221 24589999999999854 44666666
Q ss_pred HHcCCC--CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChH--HHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 550 LLEIPS--AHRIIISGTPIQNNLKELWALFNFCCPELLGDNK--WFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 550 l~~l~a--~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~--~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
+...+- .+.|+|||||- ++...+...+.-|+.. +.-+. .-...|...-. ...-... -..-.......|...
T Consensus 204 ~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~--~~~i~v~-~~~~~~~~~~~f~~~ 278 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELRE--HVQIPVD-LSLCERDIEDPFGMI 278 (746)
T ss_pred HHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhc--cCcccCc-HHHhhhhhhhhHHHH
Confidence 665543 35678999998 7888887777766655 22211 11222221100 0000000 111122344567777
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHH----HHhcCh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILK----KICDHP 701 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lr----kic~hP 701 (1060)
++|++.+--...+........ ..+ ......+.+.+..+.... ...+.++..+. .+.+|.
T Consensus 279 i~p~l~~l~~~~l~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~q-------~~~f~~~~~~~~~~~ll~~~g 341 (746)
T KOG0354|consen 279 IEPLLQQLQEEGLIEISDKST------SYE----QWVVQAEKAAAPNGPENQ-------RNCFYALHLRKYNLALLISDG 341 (746)
T ss_pred HHHHHHHHHhcCccccccccc------ccc----chhhhhhhhhccCCCccc-------hhhHHHHHHHHHHHHHHhhcc
Confidence 788766554333322111000 000 000111111111100000 00011111111 011111
Q ss_pred hhhhhhhhhhhhhhcccCCCh-----HH-HHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc--CCCceE
Q 001524 702 LLLTKRAAEDVLDGMDSMLNP-----ED-AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP--EGHNVL 773 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~-----e~-~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~--~g~KvL 773 (1060)
.-+. .+.....+........ +. ......+...+. +...+.......++|++.|.++|.+... +..|+|
T Consensus 342 ir~~-~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~---~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~I 417 (746)
T KOG0354|consen 342 IRFV-DALDYLEDFYEEVALKKYLKLELEARLIRNFTENMN---ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTI 417 (746)
T ss_pred hhhH-HHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHH---hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEE
Confidence 0000 0000000000000000 00 000000000000 1111122222468999999999988765 567999
Q ss_pred EEeccHHHHHHHHHHHhh---cCCeEEEEEC--------CCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCE
Q 001524 774 IFSQTRKMLNLIQESIGS---KGYKFLRIDG--------TTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADR 842 (1060)
Q Consensus 774 IFsq~~~~ld~L~~~L~~---~gi~~~ridG--------~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~ 842 (1060)
||+.++..+..|..+|.. .|++...+-| +|++.++++++++|++|... +|++|.+|.+|||++.++.
T Consensus 418 IFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N--vLVATSV~EEGLDI~ec~l 495 (746)
T KOG0354|consen 418 IFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN--VLVATSVAEEGLDIGECNL 495 (746)
T ss_pred EEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc--EEEEecchhccCCcccccE
Confidence 999999999999999983 2556555655 68899999999999999866 9999999999999999999
Q ss_pred EEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHH-HHHHHHHHHHHHHhccc
Q 001524 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY-RKQIFKGGLFKTATEHK 904 (1060)
Q Consensus 843 VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~-~rq~~K~~l~~~~~~~~ 904 (1060)
||+||..-||...+||+|| +| +++-.++.|.+ | .++.-+ ..+..|..+++..+...
T Consensus 496 VIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~-~~~~~~E~~~~~~e~lm~~~i~~~ 552 (746)
T KOG0354|consen 496 VICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-G-SEVIEFERNNLAKEKLMNQTISKI 552 (746)
T ss_pred EEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-c-hhHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 77 44444555555 4 444444 45677777777666543
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.2e-28 Score=288.21 Aligned_cols=369 Identities=24% Similarity=0.262 Sum_probs=263.8
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS 469 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~ 469 (1060)
.....|||||.+++..++......+.|++..+||.|||+.++.++..+. .++||||| ..|+.||...+.++...
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3566799999999988888666688999999999999999998888764 34999999 77899999888777655
Q ss_pred C-cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHH
Q 001524 470 A-KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 548 (1060)
Q Consensus 470 ~-~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~k 548 (1060)
. .+..+.+...... ...|.|+||+++.+.. .+. ......|++||+||||++..+....
T Consensus 107 ~~~~g~~~~~~~~~~---------~~~i~vat~qtl~~~~-~l~---------~~~~~~~~liI~DE~Hh~~a~~~~~-- 165 (442)
T COG1061 107 NDEIGIYGGGEKELE---------PAKVTVATVQTLARRQ-LLD---------EFLGNEFGLIIFDEVHHLPAPSYRR-- 165 (442)
T ss_pred ccccceecCceeccC---------CCcEEEEEhHHHhhhh-hhh---------hhcccccCEEEEEccccCCcHHHHH--
Confidence 4 3344444332211 1469999999998753 010 0112369999999999996544332
Q ss_pred HHHcCCCCc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 549 SLLEIPSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 549 al~~l~a~~-RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
.+..+...+ +++|||||...+-..+..+..++.|-.+
T Consensus 166 ~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy------------------------------------------ 203 (442)
T COG1061 166 ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY------------------------------------------ 203 (442)
T ss_pred HHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe------------------------------------------
Confidence 333344555 9999999975543344444443332111
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001524 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707 (1060)
Q Consensus 628 p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~ 707 (1060)
.....+.+. ...|.+.....+++.++......|..............+. +...
T Consensus 204 ----~~~~~~li~------~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~- 256 (442)
T COG1061 204 ----EVSLKELID------EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT----------------LRAE- 256 (442)
T ss_pred ----ecCHHHHHh------CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh----------------hhHH-
Confidence 111111111 2347778888899999999888887765443211110000 0000
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHH
Q 001524 708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 787 (1060)
Q Consensus 708 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~ 787 (1060)
............|+..+..++..+. .+.+++||+.+...+..|..
T Consensus 257 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~ 301 (442)
T COG1061 257 ----------------------------------NEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAK 301 (442)
T ss_pred ----------------------------------HHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHH
Confidence 0000001113557778888888776 78899999999999999999
Q ss_pred HHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhh-hC
Q 001524 788 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR-IG 866 (1060)
Q Consensus 788 ~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~R-iG 866 (1060)
.+...|+ +..++|.++..+|.++++.|+.+. ..+|++++++.+|+|+++|+.+|+..|.-++..+.|++||+.| ..
T Consensus 302 ~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 302 LFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCC
Confidence 9999888 999999999999999999999987 3488899999999999999999999999999999999999999 44
Q ss_pred CcCc--EEEEEEecCCCHHHHHHHHHHH
Q 001524 867 QKKD--VVVYRLMTCGTVEEKIYRKQIF 892 (1060)
Q Consensus 867 Q~k~--V~VyrLvt~gTiEE~I~~rq~~ 892 (1060)
.+.. ++.|-++...+.+..+.+....
T Consensus 379 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 379 GKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCceEEEEEEeecCcccccchhhhhhh
Confidence 4554 6788888889988888765544
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.6e-28 Score=292.86 Aligned_cols=338 Identities=14% Similarity=0.181 Sum_probs=225.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC--C
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS--A 470 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~--~ 470 (1060)
..|+|||.+++..++. +..+||..+||+|||++++.++..+... ...++||||| ..|+.||.++|.+|... .
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 5799999999987766 6778999999999999877655444333 2348999999 78999999999997632 2
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 550 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal 550 (1060)
.+....+.... .....|+|+||+.+.+..... -..|++||+||||++... .....+
T Consensus 188 ~~~~i~~g~~~---------~~~~~I~VaT~qsl~~~~~~~-------------~~~~~~iIvDEaH~~~~~--~~~~il 243 (501)
T PHA02558 188 AMHKIYSGTAK---------DTDAPIVVSTWQSAVKQPKEW-------------FDQFGMVIVDECHLFTGK--SLTSII 243 (501)
T ss_pred ceeEEecCccc---------CCCCCEEEeeHHHHhhchhhh-------------ccccCEEEEEchhcccch--hHHHHH
Confidence 22222222211 135689999999986533210 124899999999999653 344555
Q ss_pred HcC-CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHH
Q 001524 551 LEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629 (1060)
Q Consensus 551 ~~l-~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 629 (1060)
..+ +++++++|||||..... ..+.+..++.|-. .... .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~i~----------------~~v~-----------------~------- 282 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGDIF----------------KPVT-----------------T------- 282 (501)
T ss_pred HhhhccceEEEEeccCCCccc-cHHHHHHhhCCce----------------EEec-----------------H-------
Confidence 566 57889999999953321 1212222222210 0000 0
Q ss_pred HHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhh
Q 001524 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAA 709 (1060)
Q Consensus 630 ~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~ 709 (1060)
.+... ...+.+.....+.+..++.....+. +..+. ..+..+++
T Consensus 283 ------~~li~------~g~l~~~~~~~v~~~~~~~~~~~~~-------------~~~~~--~~~~~l~~---------- 325 (501)
T PHA02558 283 ------SQLME------EGQVTDLKINSIFLRYPDEDRVKLK-------------GEDYQ--EEIKYITS---------- 325 (501)
T ss_pred ------HHHHh------CCCcCCceEEEEeccCCHHHhhhhc-------------ccchH--HHHHHHhc----------
Confidence 00000 0011122222233333322110000 00000 00000000
Q ss_pred hhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHH
Q 001524 710 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI 789 (1060)
Q Consensus 710 ~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L 789 (1060)
...+...+..++..+...+.++|||+..++.++.|...|
T Consensus 326 -----------------------------------------~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L 364 (501)
T PHA02558 326 -----------------------------------------HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEML 364 (501)
T ss_pred -----------------------------------------cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHH
Confidence 123455666666666667889999999999999999999
Q ss_pred hhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcC
Q 001524 790 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869 (1060)
Q Consensus 790 ~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k 869 (1060)
...|+++..++|+++.++|.++++.|+.+. ..|+|.|++..++|+|++.+++||++.|+.+...+.|++||++|.|..+
T Consensus 365 ~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 365 KKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred HHcCCCEEEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999998765 3455556699999999999999999999999999999999999998776
Q ss_pred c-EEEEEEecCC
Q 001524 870 D-VVVYRLMTCG 880 (1060)
Q Consensus 870 ~-V~VyrLvt~g 880 (1060)
. |.||.++-.-
T Consensus 444 ~~~~i~D~vD~~ 455 (501)
T PHA02558 444 SIATVWDIIDDL 455 (501)
T ss_pred ceEEEEEeeccc
Confidence 4 8899998643
No 28
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=6.3e-30 Score=283.29 Aligned_cols=358 Identities=20% Similarity=0.287 Sum_probs=250.5
Q ss_pred cCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCccc-HHHHHHHHHHh
Q 001524 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTAV 466 (1060)
Q Consensus 388 lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sL-l~qW~~E~~k~ 466 (1060)
+.-.-.+.|||||...+..|.. ..+.+.||+..++|.|||+..+..+... .+++||+|..++ +.||..+|..|
T Consensus 295 idLKPst~iRpYQEksL~KMFG-NgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 295 IDLKPSTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cCcCcccccCchHHHHHHHHhC-CCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHhh
Confidence 3334467899999999999876 2334789999999999999876655443 478999999665 89999999999
Q ss_pred cCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHH
Q 001524 467 GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546 (1060)
Q Consensus 467 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~ 546 (1060)
..-..-.+..-++..... .....+|+|+||.|+....+...... .-...+....|.++|+||.|-+ +....
T Consensus 369 sti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eae--k~m~~l~~~EWGllllDEVHvv--PA~MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAE--KIMDFLRGREWGLLLLDEVHVV--PAKMF 439 (776)
T ss_pred cccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHH--HHHHHHhcCeeeeEEeehhccc--hHHHH
Confidence 643322222222222111 12467899999999975443221111 0112234677999999999998 55555
Q ss_pred HHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhh-CCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC-CPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 547 ~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl-~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
.+.+.-+.++.+++||||-+..+ |-..-|+|| .|.++. ..|..-.-
T Consensus 440 RRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-AnWmdL~~------------------------------ 486 (776)
T KOG1123|consen 440 RRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-ANWMDLQK------------------------------ 486 (776)
T ss_pred HHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh-ccHHHHHh------------------------------
Confidence 66666678889999999987542 233334554 333221 11111000
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
...+....--.|||+||+. +|+.++........+ +
T Consensus 487 ---------------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr~l--------------------L- 521 (776)
T KOG1123|consen 487 ---------------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRKRML--------------------L- 521 (776)
T ss_pred ---------------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhhhhe--------------------e-
Confidence 1112233334699999986 566655432211100 0
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
......|++++.-|++-+...|.|+|||+...-.|...
T Consensus 522 ------------------------------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~Y 559 (776)
T KOG1123|consen 522 ------------------------------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEY 559 (776)
T ss_pred ------------------------------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHH
Confidence 00125588999999999888999999999998877777
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCC-Cchhhhhhhhhhhh
Q 001524 786 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW-NPSTDNQSVDRAYR 864 (1060)
Q Consensus 786 ~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W-Np~~~~QAiGRa~R 864 (1060)
+-.|.+ -.|.|.+++.+|.++++.|+.++....+++| ++|...++|+.|+.+|-...+. +...+.||.||+.|
T Consensus 560 Aikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 560 AIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred HHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 666654 4689999999999999999999877767777 9999999999999999999887 77889999999999
Q ss_pred hCCcC----cEEEEEEecCCCHHHHH
Q 001524 865 IGQKK----DVVVYRLMTCGTVEEKI 886 (1060)
Q Consensus 865 iGQ~k----~V~VyrLvt~gTiEE~I 886 (1060)
.-... +++.|.|+..+|.|-..
T Consensus 634 AKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 634 AKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred HhhcCccccceeeeeeeecchHHHHh
Confidence 76433 38899999999998654
No 29
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=1.1e-26 Score=280.89 Aligned_cols=321 Identities=21% Similarity=0.261 Sum_probs=219.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHH-HHHHHHhhc-----cCCCceEEEeC-cccHHHHHHHHHHh
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHS-----RLIKRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqai-ali~~l~~~-----~~~k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
..++|+|..++..++. ++..|+..+||+|||++.+ .++..+... .....+||||| ..|+.||..++.++
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 4588999999988877 8999999999999998753 333333221 12235899999 88999999999998
Q ss_pred cCCCc--EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-
Q 001524 467 GLSAK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS- 543 (1060)
Q Consensus 467 ~~~~~--v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~- 543 (1060)
+.... +...+|...... .........+|+|+|++.+........ .....+.+|||||||++....
T Consensus 227 ~~~~~i~~~~~~gg~~~~~--q~~~l~~~~~IlVaTPgrL~d~l~~~~----------~~l~~v~~lViDEAd~mld~gf 294 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRG--QIYALRRGVEILIACPGRLIDFLESNV----------TNLRRVTYLVLDEADRMLDMGF 294 (545)
T ss_pred hcccCccEEEEeCCCCHHH--HHHHHHcCCCEEEECHHHHHHHHHcCC----------CChhhCcEEEeehHHhhhhcch
Confidence 76543 333444332222 223344568999999998865543211 112347899999999987643
Q ss_pred -hHHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 544 -TQRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 544 -sk~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
.++.+.+..++. ...+++|||.- .++..+...+... .|+.
T Consensus 295 ~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~l~~~-------------~~v~--------------------- 336 (545)
T PTZ00110 295 EPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLARDLCKE-------------EPVH--------------------- 336 (545)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHHHhcc-------------CCEE---------------------
Confidence 233444455543 45688999952 1221111110000 0000
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCccc-eEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN-EMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 700 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~-e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 700 (1060)
-.+-. . ........ ..+..+
T Consensus 337 --------------i~vg~---~--~l~~~~~i~q~~~~~---------------------------------------- 357 (545)
T PTZ00110 337 --------------VNVGS---L--DLTACHNIKQEVFVV---------------------------------------- 357 (545)
T ss_pred --------------EEECC---C--ccccCCCeeEEEEEE----------------------------------------
Confidence 00000 0 00000000 000000
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
....|...|..+|..+...+.++||||+.+.
T Consensus 358 -------------------------------------------------~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 358 -------------------------------------------------EEHEKRGKLKMLLQRIMRDGDKILIFVETKK 388 (545)
T ss_pred -------------------------------------------------echhHHHHHHHHHHHhcccCCeEEEEecChH
Confidence 0123556667777776667889999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhh
Q 001524 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860 (1060)
Q Consensus 781 ~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiG 860 (1060)
.++.|...|...|+++..+||++++.+|..+++.|+++... +|++|.++++|||++.+++||+||+|+++..|.||+|
T Consensus 389 ~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~--ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG 466 (545)
T PTZ00110 389 GADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP--IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIG 466 (545)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc--EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999998755 8899999999999999999999999999999999999
Q ss_pred hhhhhCCcCcEEEEEEecCC
Q 001524 861 RAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 861 Ra~RiGQ~k~V~VyrLvt~g 880 (1060)
|++|.|.+..+ |.|++.+
T Consensus 467 RtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 467 RTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred ccccCCCCceE--EEEECcc
Confidence 99999987655 4456654
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.5e-27 Score=281.56 Aligned_cols=310 Identities=16% Similarity=0.169 Sum_probs=213.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..++|+|.+++..++. ++.+++..+||+|||+..+..+ +. ..+.+|||+| ..|+.||...+..++.. +
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~--l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~--~ 78 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPA--LC---SDGITLVISPLISLMEDQVLQLKASGIP--A 78 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHH--HH---cCCcEEEEecHHHHHHHHHHHHHHcCCc--E
Confidence 3589999999998887 8899999999999997543221 21 2468999999 88999999999876543 3
Q ss_pred EEEcccccchhhHH-HHH-hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH-----
Q 001524 473 REYFGTCVKTRQYE-LQY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ----- 545 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~-~~~-~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk----- 545 (1060)
..+.+......... ... ..+..+|+++|++.+......+.... ....+.+|||||||++..+...
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~--------~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE--------ERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH--------hcCCcCEEEEeCCcccCccccccHHHH
Confidence 33333322221111 111 23457899999999865432111000 2345789999999999765422
Q ss_pred --HHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 546 --RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 546 --~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
+......++....++|||||-.....++...+.+-.|..+.. .|.
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~--------------------------- 197 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD--------------------------- 197 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC---------------------------
Confidence 222233456677899999996555555544444322211100 000
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
-|.. ...+.-.
T Consensus 198 --------------------------r~nl-~~~v~~~------------------------------------------ 208 (470)
T TIGR00614 198 --------------------------RPNL-YYEVRRK------------------------------------------ 208 (470)
T ss_pred --------------------------CCCc-EEEEEeC------------------------------------------
Confidence 0000 0000000
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
...++..+..++.+ ..++.++||||.++..++
T Consensus 209 -----------------------------------------------~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 209 -----------------------------------------------TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred -----------------------------------------------CccHHHHHHHHHHH-hcCCCceEEEECcHHHHH
Confidence 00011222233322 125667899999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.+...|...|+.+..+||+++..+|.++++.|..+... +|++|.+.|+|||+++++.||+|++|.++..|.|++||++
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~--vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaG 318 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ--VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAG 318 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc--EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcC
Confidence 99999999999999999999999999999999988755 8889999999999999999999999999999999999999
Q ss_pred hhCCcCcEEEE
Q 001524 864 RIGQKKDVVVY 874 (1060)
Q Consensus 864 RiGQ~k~V~Vy 874 (1060)
|.|+...+++|
T Consensus 319 R~G~~~~~~~~ 329 (470)
T TIGR00614 319 RDGLPSECHLF 329 (470)
T ss_pred CCCCCceEEEE
Confidence 99998887765
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=3.3e-26 Score=270.09 Aligned_cols=316 Identities=19% Similarity=0.220 Sum_probs=213.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHH-HHhhcc-------CCCceEEEeC-cccHHHHHHHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA-GLFHSR-------LIKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~-~l~~~~-------~~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
..+.|+|.+++..++. |++.|+..+||+|||+..+..+. .+.... ....+|||+| ..|+.||.+++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 3578999999988877 89999999999999987554333 332211 1247999999 888999999888
Q ss_pred HhcC--CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc
Q 001524 465 AVGL--SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542 (1060)
Q Consensus 465 k~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 542 (1060)
.+.. +..+..++|....... ...+....+|+|+|++.+....... ......+.+||+||||++-..
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~TP~~l~~~l~~~----------~~~l~~v~~lViDEad~l~~~ 172 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQ--LKVLESGVDILIGTTGRLIDYAKQN----------HINLGAIQVVVLDEADRMFDL 172 (423)
T ss_pred HHhccCCceEEEEECCCCHHHH--HHHhcCCCCEEEECHHHHHHHHHcC----------CcccccccEEEEecHHHHhhc
Confidence 7754 3445555554332222 2223345799999999986654321 112345789999999998654
Q ss_pred c--hHHHHHHHcCCC---CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHH
Q 001524 543 S--TQRAKSLLEIPS---AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 617 (1060)
Q Consensus 543 ~--sk~~kal~~l~a---~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 617 (1060)
. ..+...+..++. ...+++|||.-. .+.++.. .+ +..|...
T Consensus 173 ~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~~---------------~~~p~~i---------------- 218 (423)
T PRK04837 173 GFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--EH---------------MNNPEYV---------------- 218 (423)
T ss_pred ccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--HH---------------CCCCEEE----------------
Confidence 3 223334444442 234788999631 1111100 00 0000000
Q ss_pred HHHHHHHHhhHHHHHhhhhcccccCccccccccCcc-ceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH
Q 001524 618 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKK-NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK 696 (1060)
Q Consensus 618 ~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k-~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk 696 (1060)
.+... ...... ....+++
T Consensus 219 -------------------~v~~~------~~~~~~i~~~~~~~------------------------------------ 237 (423)
T PRK04837 219 -------------------EVEPE------QKTGHRIKEELFYP------------------------------------ 237 (423)
T ss_pred -------------------EEcCC------CcCCCceeEEEEeC------------------------------------
Confidence 00000 000000 0000000
Q ss_pred HhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEe
Q 001524 697 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776 (1060)
Q Consensus 697 ic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFs 776 (1060)
....|+..|..++... ...++||||
T Consensus 238 -----------------------------------------------------~~~~k~~~l~~ll~~~--~~~~~lVF~ 262 (423)
T PRK04837 238 -----------------------------------------------------SNEEKMRLLQTLIEEE--WPDRAIIFA 262 (423)
T ss_pred -----------------------------------------------------CHHHHHHHHHHHHHhc--CCCeEEEEE
Confidence 0122455566666543 457899999
Q ss_pred ccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhh
Q 001524 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856 (1060)
Q Consensus 777 q~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 856 (1060)
+.+..++.+...|...|+++..+||++++++|.++++.|+++... +|++|.++++|||++++++||+||+|+++..|.
T Consensus 263 ~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 263 NTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc--EEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 999999999999999999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred hhhhhhhhhCCcCcEEEEEEecC
Q 001524 857 QSVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 857 QAiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
|++||++|.|+...++. |++.
T Consensus 341 qR~GR~gR~G~~G~ai~--~~~~ 361 (423)
T PRK04837 341 HRIGRTGRAGASGHSIS--LACE 361 (423)
T ss_pred eccccccCCCCCeeEEE--EeCH
Confidence 99999999998765543 4444
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=4.9e-26 Score=270.85 Aligned_cols=314 Identities=17% Similarity=0.245 Sum_probs=209.5
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHH-HHHhhcc------CCCceEEEeC-cccHHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFL-AGLFHSR------LIKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali-~~l~~~~------~~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
...++|+|.+++..++. +++.|+..+||+|||+..+..+ ..+.... ...++||||| ..|+.||.+++.
T Consensus 21 ~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 21 YREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 34688999999998877 8899999999999998755433 3332211 1136999999 889999999998
Q ss_pred HhcCC--CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc
Q 001524 465 AVGLS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542 (1060)
Q Consensus 465 k~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 542 (1060)
.+... ..+..+.|...... ....+....+|+|+|++.+........ .....+++|||||||++-..
T Consensus 97 ~~~~~~~~~~~~~~gg~~~~~--~~~~l~~~~~IiV~TP~rL~~~~~~~~----------~~l~~v~~lViDEah~ll~~ 164 (456)
T PRK10590 97 DYSKYLNIRSLVVFGGVSINP--QMMKLRGGVDVLVATPGRLLDLEHQNA----------VKLDQVEILVLDEADRMLDM 164 (456)
T ss_pred HHhccCCCEEEEEECCcCHHH--HHHHHcCCCcEEEEChHHHHHHHHcCC----------cccccceEEEeecHHHHhcc
Confidence 87543 34444444433222 222344578999999999865432111 12345789999999998654
Q ss_pred c--hHHHHHHHcCCCC-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 543 S--TQRAKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 543 ~--sk~~kal~~l~a~-~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
. ..+...+..++.. ..+++|||+-. .+.+ +...+. ..|...
T Consensus 165 ~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~---l~~~~~--------------~~~~~i------------------ 208 (456)
T PRK10590 165 GFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKA---LAEKLL--------------HNPLEI------------------ 208 (456)
T ss_pred ccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHH---HHHHHc--------------CCCeEE------------------
Confidence 3 2333444555443 46889999732 1111 111100 000000
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
.+... ....+.....+.++. .
T Consensus 209 -----------------~~~~~-----~~~~~~i~~~~~~~~--~----------------------------------- 229 (456)
T PRK10590 209 -----------------EVARR-----NTASEQVTQHVHFVD--K----------------------------------- 229 (456)
T ss_pred -----------------EEecc-----cccccceeEEEEEcC--H-----------------------------------
Confidence 00000 000000000011000 0
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
..|...|..++.. ....++||||.++
T Consensus 230 ----------------------------------------------------~~k~~~l~~l~~~--~~~~~~lVF~~t~ 255 (456)
T PRK10590 230 ----------------------------------------------------KRKRELLSQMIGK--GNWQQVLVFTRTK 255 (456)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHc--CCCCcEEEEcCcH
Confidence 0112223333322 2456899999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhh
Q 001524 780 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859 (1060)
Q Consensus 780 ~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAi 859 (1060)
..++.|...|...|+.+..+||++++.+|.++++.|+++... +|++|.++++|||++++++||+||+|+++..|.|++
T Consensus 256 ~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~ 333 (456)
T PRK10590 256 HGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR--VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRI 333 (456)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhc
Confidence 999999999999999999999999999999999999998755 888999999999999999999999999999999999
Q ss_pred hhhhhhCCcCcEEE
Q 001524 860 DRAYRIGQKKDVVV 873 (1060)
Q Consensus 860 GRa~RiGQ~k~V~V 873 (1060)
||++|.|.+..+++
T Consensus 334 GRaGR~g~~G~ai~ 347 (456)
T PRK10590 334 GRTGRAAATGEALS 347 (456)
T ss_pred cccccCCCCeeEEE
Confidence 99999998776554
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=5.3e-26 Score=274.06 Aligned_cols=318 Identities=17% Similarity=0.225 Sum_probs=215.8
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhh-------ccCCCceEEEeC-cccHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFH-------SRLIKRALVVAP-KTLLSHWIKEL 463 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~-------~~~~k~vLIV~P-~sLl~qW~~E~ 463 (1060)
...++|+|.+++..++. |++.|+..+||+|||+..+. ++..+.. ......+|||+| ..|+.|+.+++
T Consensus 141 ~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 141 YEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 34689999999998876 89999999999999987543 3333321 112357999999 78889999888
Q ss_pred HHhcCCC--cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC
Q 001524 464 TAVGLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541 (1060)
Q Consensus 464 ~k~~~~~--~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 541 (1060)
..+.... ++....|...... ....+....+|+|+|++.+........ .......+||+||||++..
T Consensus 217 ~~l~~~~~~~~~~~~gG~~~~~--q~~~l~~~~~IiV~TPgrL~~~l~~~~----------~~l~~v~~lViDEad~ml~ 284 (518)
T PLN00206 217 KVLGKGLPFKTALVVGGDAMPQ--QLYRIQQGVELIVGTPGRLIDLLSKHD----------IELDNVSVLVLDEVDCMLE 284 (518)
T ss_pred HHHhCCCCceEEEEECCcchHH--HHHHhcCCCCEEEECHHHHHHHHHcCC----------ccchheeEEEeecHHHHhh
Confidence 8876543 3333444332222 223344568999999998865543211 1233478999999999865
Q ss_pred cc--hHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 542 PS--TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 542 ~~--sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
.. ..+.+.+..++....+++|||.-. ++-.+...+... ++
T Consensus 285 ~gf~~~i~~i~~~l~~~q~l~~SATl~~----~v~~l~~~~~~~--------------~~-------------------- 326 (518)
T PLN00206 285 RGFRDQVMQIFQALSQPQVLLFSATVSP----EVEKFASSLAKD--------------II-------------------- 326 (518)
T ss_pred cchHHHHHHHHHhCCCCcEEEEEeeCCH----HHHHHHHHhCCC--------------CE--------------------
Confidence 33 344555566777788999999732 111111111000 00
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccCc--cceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHH
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKI 697 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrki 697 (1060)
.+... ....+. .....+++.-
T Consensus 327 ------------------~i~~~----~~~~~~~~v~q~~~~~~~----------------------------------- 349 (518)
T PLN00206 327 ------------------LISIG----NPNRPNKAVKQLAIWVET----------------------------------- 349 (518)
T ss_pred ------------------EEEeC----CCCCCCcceeEEEEeccc-----------------------------------
Confidence 00000 000000 0111122210
Q ss_pred hcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEec
Q 001524 698 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 777 (1060)
Q Consensus 698 c~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq 777 (1060)
..|...|.++|........++|||+.
T Consensus 350 ------------------------------------------------------~~k~~~l~~~l~~~~~~~~~~iVFv~ 375 (518)
T PLN00206 350 ------------------------------------------------------KQKKQKLFDILKSKQHFKPPAVVFVS 375 (518)
T ss_pred ------------------------------------------------------hhHHHHHHHHHHhhcccCCCEEEEcC
Confidence 11333444555544334468999999
Q ss_pred cHHHHHHHHHHHhh-cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhh
Q 001524 778 TRKMLNLIQESIGS-KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856 (1060)
Q Consensus 778 ~~~~ld~L~~~L~~-~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 856 (1060)
++..++.+...|.. .|+++..+||++++.+|..+++.|++|... +|++|.++++|||++.+++||+||+|.++..|.
T Consensus 376 s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~--ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yi 453 (518)
T PLN00206 376 SRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP--VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYI 453 (518)
T ss_pred CchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEEecHhhccCCcccCCEEEEeCCCCCHHHHH
Confidence 99999999999975 599999999999999999999999998865 889999999999999999999999999999999
Q ss_pred hhhhhhhhhCCcCcEEEEEEecC
Q 001524 857 QSVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 857 QAiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
|++||++|.|....++ .|++.
T Consensus 454 hRiGRaGR~g~~G~ai--~f~~~ 474 (518)
T PLN00206 454 HQIGRASRMGEKGTAI--VFVNE 474 (518)
T ss_pred HhccccccCCCCeEEE--EEEch
Confidence 9999999999765444 45554
No 34
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=9.4e-26 Score=269.09 Aligned_cols=317 Identities=19% Similarity=0.250 Sum_probs=217.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc---C
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG---L 468 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~---~ 468 (1060)
..+.|+|.+++..++. +++.|+..+||+|||+..+. ++..+........+||+|| ..|..||.+++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4588999999998887 88999999999999987443 3333322222346899999 889999999998764 3
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--hHH
Q 001524 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQR 546 (1060)
Q Consensus 469 ~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--sk~ 546 (1060)
+..+..+.|....... ........+|+|+|++.+........ ..-..+.+||+||||++-... ...
T Consensus 101 ~~~v~~~~Gg~~~~~~--~~~l~~~~~IvV~Tp~rl~~~l~~~~----------~~l~~l~~lViDEad~~l~~g~~~~l 168 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQ--IDSLEHGAHIIVGTPGRILDHLRKGT----------LDLDALNTLVLDEADRMLDMGFQDAI 168 (460)
T ss_pred CcEEEEEECCCChHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------ccHHHCCEEEEECHHHHhCcCcHHHH
Confidence 5566666665433222 22334567999999999876543211 123457899999999986543 233
Q ss_pred HHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 547 AKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 547 ~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
...+..++. ...+++|||+-. ++-.+..... ..|...
T Consensus 169 ~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~~~~--------------~~~~~i------------------------ 206 (460)
T PRK11776 169 DAIIRQAPARRQTLLFSATYPE----GIAAISQRFQ--------------RDPVEV------------------------ 206 (460)
T ss_pred HHHHHhCCcccEEEEEEecCcH----HHHHHHHHhc--------------CCCEEE------------------------
Confidence 444445544 346889999731 1111111000 000000
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
.+ .. ....+......+.+.
T Consensus 207 -----------~~-~~-----~~~~~~i~~~~~~~~-------------------------------------------- 225 (460)
T PRK11776 207 -----------KV-ES-----THDLPAIEQRFYEVS-------------------------------------------- 225 (460)
T ss_pred -----------EE-Cc-----CCCCCCeeEEEEEeC--------------------------------------------
Confidence 00 00 000000001111110
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
...|+..|..++... .+.++||||+.+..++.+
T Consensus 226 ---------------------------------------------~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 226 ---------------------------------------------PDERLPALQRLLLHH--QPESCVVFCNTKKECQEV 258 (460)
T ss_pred ---------------------------------------------cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHH
Confidence 112455566666543 456899999999999999
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhh
Q 001524 786 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865 (1060)
Q Consensus 786 ~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~Ri 865 (1060)
...|...|+.+..+||++++.+|+.+++.|+++... +|++|.++++|||++++++||+||+|.++..|.||+||++|.
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCC
Confidence 999999999999999999999999999999998755 888999999999999999999999999999999999999999
Q ss_pred CCcCcEEEEEEecCC
Q 001524 866 GQKKDVVVYRLMTCG 880 (1060)
Q Consensus 866 GQ~k~V~VyrLvt~g 880 (1060)
|+...+ |.|+...
T Consensus 337 g~~G~a--i~l~~~~ 349 (460)
T PRK11776 337 GSKGLA--LSLVAPE 349 (460)
T ss_pred CCcceE--EEEEchh
Confidence 987554 4455543
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=1.1e-25 Score=266.76 Aligned_cols=316 Identities=17% Similarity=0.195 Sum_probs=211.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHH-HHhhc----cCCCceEEEeC-cccHHHHHHHHHHhc
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA-GLFHS----RLIKRALVVAP-KTLLSHWIKELTAVG 467 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~-~l~~~----~~~k~vLIV~P-~sLl~qW~~E~~k~~ 467 (1060)
..++|+|.+++..++. +++.|+..+||+|||+.++..+. .+... ....++||++| ..|+.||.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4578999999998887 78999999999999987554333 33221 12357999999 778899988888775
Q ss_pred CC--CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--
Q 001524 468 LS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-- 543 (1060)
Q Consensus 468 ~~--~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-- 543 (1060)
.. ..+..+.|....... ...+....+|+|+|++.+........ .....+++||+||||++....
T Consensus 98 ~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~~~~~~----------~~~~~v~~lViDEah~~l~~~~~ 165 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNH--AEVFSENQDIVVATPGRLLQYIKEEN----------FDCRAVETLILDEADRMLDMGFA 165 (434)
T ss_pred ccCCcEEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------cCcccCCEEEEECHHHHhCCCcH
Confidence 43 455555554433222 22233567899999998876543211 123457899999999986543
Q ss_pred hHHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001524 544 TQRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622 (1060)
Q Consensus 544 sk~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 622 (1060)
..+...+..++. ...+++|||+-...+.++.. .+.. .|+..
T Consensus 166 ~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~~~--------------~~~~i--------------------- 207 (434)
T PRK11192 166 QDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RLLN--------------DPVEV--------------------- 207 (434)
T ss_pred HHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HHcc--------------CCEEE---------------------
Confidence 222222333333 34588999984221221111 0000 00000
Q ss_pred HHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001524 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 702 (1060)
Q Consensus 623 ~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 702 (1060)
.+. + ...........+ ...
T Consensus 208 --------------~~~---~---~~~~~~~i~~~~-~~~---------------------------------------- 226 (434)
T PRK11192 208 --------------EAE---P---SRRERKKIHQWY-YRA---------------------------------------- 226 (434)
T ss_pred --------------Eec---C---CcccccCceEEE-EEe----------------------------------------
Confidence 000 0 000000000000 000
Q ss_pred hhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHH
Q 001524 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782 (1060)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~l 782 (1060)
.....|...|..++.. ....++||||.++..+
T Consensus 227 ----------------------------------------------~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 227 ----------------------------------------------DDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERV 258 (434)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHH
Confidence 0012244555555543 2457899999999999
Q ss_pred HHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhh
Q 001524 783 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862 (1060)
Q Consensus 783 d~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa 862 (1060)
+.|...|...|+.+..++|++++.+|..+++.|++|... +|++|.++++|||++.+++||+||+|+++..|.||+||+
T Consensus 259 ~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~--vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~ 336 (434)
T PRK11192 259 HELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN--VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336 (434)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc--EEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccc
Confidence 999999999999999999999999999999999998755 889999999999999999999999999999999999999
Q ss_pred hhhCCcCcEEEE
Q 001524 863 YRIGQKKDVVVY 874 (1060)
Q Consensus 863 ~RiGQ~k~V~Vy 874 (1060)
+|.|....+.++
T Consensus 337 gR~g~~g~ai~l 348 (434)
T PRK11192 337 GRAGRKGTAISL 348 (434)
T ss_pred ccCCCCceEEEE
Confidence 999987765543
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.1e-25 Score=273.30 Aligned_cols=315 Identities=19% Similarity=0.267 Sum_probs=213.2
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHH-HHHhhcc-------CCCceEEEeC-cccHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFL-AGLFHSR-------LIKRALVVAP-KTLLSHWIKEL 463 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali-~~l~~~~-------~~k~vLIV~P-~sLl~qW~~E~ 463 (1060)
...++|+|..++..++. +++.|+..+||+|||+..+..+ ..+.... ...++|||+| ..|+.|+.+.+
T Consensus 29 ~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 29 FTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 34588999999999887 8999999999999998755433 3332211 1357999999 88999999999
Q ss_pred HHhcCCC--cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC
Q 001524 464 TAVGLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541 (1060)
Q Consensus 464 ~k~~~~~--~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 541 (1060)
.+|+... .+..++|....... ...+....+|+|+|++.+......... .....+.+|||||||++-.
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q--~~~l~~~~dIiV~TP~rL~~~l~~~~~---------~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQ--RELLQQGVDVIIATPGRLIDYVKQHKV---------VSLHACEICVLDEADRMFD 173 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHH--HHHHhCCCCEEEECHHHHHHHHHhccc---------cchhheeeeEecCHHHHhh
Confidence 9886544 34455554432222 222334679999999998765432110 1123467899999999854
Q ss_pred cc--hHHHHHHHcCC---CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhH
Q 001524 542 PS--TQRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 616 (1060)
Q Consensus 542 ~~--sk~~kal~~l~---a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 616 (1060)
.. ..+...+..++ ....+++|||.-. .+.++.. .++. .|.
T Consensus 174 ~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~--~~l~---------------~p~----------------- 218 (572)
T PRK04537 174 LGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY--EHMN---------------EPE----------------- 218 (572)
T ss_pred cchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHH--HHhc---------------CCc-----------------
Confidence 32 22333444444 3456889999632 1111100 0000 000
Q ss_pred HHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH
Q 001524 617 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK 696 (1060)
Q Consensus 617 ~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk 696 (1060)
..+.... . ..+......+++. .
T Consensus 219 -------------------~i~v~~~----~-~~~~~i~q~~~~~-~--------------------------------- 240 (572)
T PRK04537 219 -------------------KLVVETE----T-ITAARVRQRIYFP-A--------------------------------- 240 (572)
T ss_pred -------------------EEEeccc----c-ccccceeEEEEec-C---------------------------------
Confidence 0000000 0 0000000000000 0
Q ss_pred HhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEe
Q 001524 697 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776 (1060)
Q Consensus 697 ic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFs 776 (1060)
...|+..|..++.. ..+.++||||
T Consensus 241 ------------------------------------------------------~~~k~~~L~~ll~~--~~~~k~LVF~ 264 (572)
T PRK04537 241 ------------------------------------------------------DEEKQTLLLGLLSR--SEGARTMVFV 264 (572)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhc--ccCCcEEEEe
Confidence 01244455555544 2577999999
Q ss_pred ccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhh
Q 001524 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856 (1060)
Q Consensus 777 q~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 856 (1060)
.++..++.|...|...|+.+..+||.++..+|.++++.|+++... +|++|.++++|||+..+++||+||.||++..|.
T Consensus 265 nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~--VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 265 NTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE--ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999998755 899999999999999999999999999999999
Q ss_pred hhhhhhhhhCCcCcEEE
Q 001524 857 QSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 857 QAiGRa~RiGQ~k~V~V 873 (1060)
|++||++|.|....+++
T Consensus 343 qRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 343 HRIGRTARLGEEGDAIS 359 (572)
T ss_pred hhhcccccCCCCceEEE
Confidence 99999999998776554
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.5e-25 Score=266.28 Aligned_cols=313 Identities=20% Similarity=0.270 Sum_probs=210.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhccC-------CCceEEEeC-cccHHHHHHHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSRL-------IKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~~-------~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
..++|||.+++..++. |++.|++.+||+|||+..+. ++..+..... ..++|||+| +.|..||.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4589999999988877 88999999999999987443 3444433221 357999999 889999999988
Q ss_pred HhcC--CCcEEEEcccccchhhHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC
Q 001524 465 AVGL--SAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541 (1060)
Q Consensus 465 k~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 541 (1060)
.+.. +..+..+.|....... ...+ ....+|+|+|++++........ .....+.+|||||||++.+
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~--~~~~~~~~~~Iiv~TP~~Ll~~~~~~~----------~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQ--LKQLEARFCDILVATPGRLLDFNQRGE----------VHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HhhccCCCEEEEEEccCChHHH--HHHHhCCCCCEEEECHHHHHHHHHcCC----------cccccCceEEechHHHHHh
Confidence 8754 3455555554332221 1112 2457999999999865432211 1123468999999999976
Q ss_pred cch--HHHHHHHcCC---CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhH
Q 001524 542 PST--QRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 616 (1060)
Q Consensus 542 ~~s--k~~kal~~l~---a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 616 (1060)
..- .....+..+. ....+++|||... ++.++ .... ...|...
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~---~~~~--------------~~~~~~v--------------- 298 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNL---AKQW--------------TTDPAIV--------------- 298 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHH---HHHh--------------ccCCEEE---------------
Confidence 432 2333344443 2457889999632 12211 1100 0000000
Q ss_pred HHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH
Q 001524 617 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK 696 (1060)
Q Consensus 617 ~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk 696 (1060)
.+... . .........+++.
T Consensus 299 --------------------~~~~~-----~-~~~~~~~~~~~~~----------------------------------- 317 (475)
T PRK01297 299 --------------------EIEPE-----N-VASDTVEQHVYAV----------------------------------- 317 (475)
T ss_pred --------------------EeccC-----c-CCCCcccEEEEEe-----------------------------------
Confidence 00000 0 0000000000000
Q ss_pred HhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEe
Q 001524 697 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776 (1060)
Q Consensus 697 ic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFs 776 (1060)
..+.|...|..++... ...++||||
T Consensus 318 -----------------------------------------------------~~~~k~~~l~~ll~~~--~~~~~IVF~ 342 (475)
T PRK01297 318 -----------------------------------------------------AGSDKYKLLYNLVTQN--PWERVMVFA 342 (475)
T ss_pred -----------------------------------------------------cchhHHHHHHHHHHhc--CCCeEEEEe
Confidence 0122334444444432 456899999
Q ss_pred ccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhh
Q 001524 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856 (1060)
Q Consensus 777 q~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 856 (1060)
+.+..++.|...|...|+.+..++|+++..+|.++++.|++|... +|++|.++++|||+.+++.||+||+|+++..|.
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~ 420 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--VLVATDVAGRGIHIDGISHVINFTLPEDPDDYV 420 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc--EEEEccccccCCcccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999998755 888999999999999999999999999999999
Q ss_pred hhhhhhhhhCCcCcEEE
Q 001524 857 QSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 857 QAiGRa~RiGQ~k~V~V 873 (1060)
|++||++|.|+...+++
T Consensus 421 Qr~GRaGR~g~~g~~i~ 437 (475)
T PRK01297 421 HRIGRTGRAGASGVSIS 437 (475)
T ss_pred HhhCccCCCCCCceEEE
Confidence 99999999998765443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=1.6e-25 Score=274.26 Aligned_cols=305 Identities=16% Similarity=0.180 Sum_probs=208.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..++|+|.+++..++. ++.+++..+||.|||+.....+ +. ..+.+|||+| .+|+.||...+...+.. .
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpa--l~---~~g~tlVisPl~sL~~dqv~~l~~~gi~--~ 92 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPA--LV---LDGLTLVVSPLISLMKDQVDQLLANGVA--A 92 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHH--HH---cCCCEEEEecHHHHHHHHHHHHHHcCCc--E
Confidence 3589999999998876 8899999999999998643222 22 1367999999 88999999999876432 3
Q ss_pred EEEcccccchhhHHH-HH-hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch------
Q 001524 473 REYFGTCVKTRQYEL-QY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------ 544 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~-~~-~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------ 544 (1060)
....+.......... .. .....+++++|++.+....- .. .+....+.+|||||||++..+..
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~-~~---------~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNF-LE---------HLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHH-HH---------HHhhCCCCEEEEeCccccccccCcccHHH
Confidence 333333222211111 11 12356899999998864211 00 01234578999999999976542
Q ss_pred -HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 -QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 -k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.+......++....++||||+-.....++...+.+..|..+.. .|
T Consensus 163 ~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~---------------------------- 208 (607)
T PRK11057 163 AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SF---------------------------- 208 (607)
T ss_pred HHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CC----------------------------
Confidence 2222223445667899999996655555544443322211000 00
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
.-|.. .+.+ +.
T Consensus 209 -------------------------~r~nl-~~~v-~~------------------------------------------ 219 (607)
T PRK11057 209 -------------------------DRPNI-RYTL-VE------------------------------------------ 219 (607)
T ss_pred -------------------------CCCcc-eeee-ee------------------------------------------
Confidence 00000 0000 00
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
...++..+..++.. ..+.++||||.++..++
T Consensus 220 -----------------------------------------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 220 -----------------------------------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVE 250 (607)
T ss_pred -----------------------------------------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHH
Confidence 00011222333332 25678999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.+...|...|+++..+||+++.++|.++++.|..+... +|++|.+.|+|||+++++.||+||+|+++..|.|++||++
T Consensus 251 ~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 251 DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ--IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC--EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999998755 8889999999999999999999999999999999999999
Q ss_pred hhCCcCcEEE
Q 001524 864 RIGQKKDVVV 873 (1060)
Q Consensus 864 RiGQ~k~V~V 873 (1060)
|.|....+.+
T Consensus 329 R~G~~~~~il 338 (607)
T PRK11057 329 RDGLPAEAML 338 (607)
T ss_pred CCCCCceEEE
Confidence 9998776554
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=2e-25 Score=273.79 Aligned_cols=305 Identities=19% Similarity=0.221 Sum_probs=213.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..++|+|.+++..++. |++.+++.+||.|||+.+... .+. ..+.+|||+| .+|+.+|...+...+. .+
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lp--al~---~~g~~lVisPl~sL~~dq~~~l~~~gi--~~ 80 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVP--ALL---LKGLTVVISPLISLMKDQVDQLRAAGV--AA 80 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHH--HHH---cCCcEEEEcCCHHHHHHHHHHHHHcCC--cE
Confidence 3589999999998887 889999999999999865422 222 2367899999 8899999999988643 34
Q ss_pred EEEcccccchhhHHH-H-HhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch------
Q 001524 473 REYFGTCVKTRQYEL-Q-YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------ 544 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~-~-~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------ 544 (1060)
..+.+.......... . ...+..+++++|++.+....... .+....+.+|||||||++..+..
T Consensus 81 ~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~----------~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN----------MLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH----------HHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 444443322222111 1 12346789999999886432100 01234689999999999975442
Q ss_pred -HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 -QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 -k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
++......++....++||||+......++...+.+-.+..+ ...+
T Consensus 151 ~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~------~~~~---------------------------- 196 (591)
T TIGR01389 151 QRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF------ITSF---------------------------- 196 (591)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE------ecCC----------------------------
Confidence 23333444556668999999965555555444432211100 0000
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
..|.... .+. .
T Consensus 197 -------------------------~r~nl~~-~v~-~------------------------------------------ 207 (591)
T TIGR01389 197 -------------------------DRPNLRF-SVV-K------------------------------------------ 207 (591)
T ss_pred -------------------------CCCCcEE-EEE-e------------------------------------------
Confidence 0000000 000 0
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
...+...+.+++... .+.++||||.++..++
T Consensus 208 -----------------------------------------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 208 -----------------------------------------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVE 238 (591)
T ss_pred -----------------------------------------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHH
Confidence 011233344445443 3678999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.+...|...|+++..+||+++.++|..+++.|..+... +|++|.++|+|||+++++.||+|++|+|+..|.|++||++
T Consensus 239 ~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~--vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaG 316 (591)
T TIGR01389 239 ELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK--VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAG 316 (591)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhcccc
Confidence 99999999999999999999999999999999998754 8999999999999999999999999999999999999999
Q ss_pred hhCCcCcEEE
Q 001524 864 RIGQKKDVVV 873 (1060)
Q Consensus 864 RiGQ~k~V~V 873 (1060)
|.|+...+.+
T Consensus 317 R~G~~~~~il 326 (591)
T TIGR01389 317 RDGLPAEAIL 326 (591)
T ss_pred CCCCCceEEE
Confidence 9998777654
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=7.1e-25 Score=257.07 Aligned_cols=319 Identities=20% Similarity=0.237 Sum_probs=210.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh-ccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~-~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
..++|+|..++..++. +.+.|+..+||+|||+.++..+..... .....++|||+| ..|+.||.+.+..++....
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3589999999999887 889999999999999875543333332 223468999999 7888898888877754333
Q ss_pred --EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--hHHH
Q 001524 472 --IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQRA 547 (1060)
Q Consensus 472 --v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--sk~~ 547 (1060)
.....|..... ..........+|+|+|++.+........ .....+++||+||||++.... ....
T Consensus 125 ~~~~~~~g~~~~~--~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----------~~l~~i~lvViDEah~~~~~~~~~~~~ 192 (401)
T PTZ00424 125 VRCHACVGGTVVR--DDINKLKAGVHMVVGTPGRVYDMIDKRH----------LRVDDLKLFILDEADEMLSRGFKGQIY 192 (401)
T ss_pred ceEEEEECCcCHH--HHHHHHcCCCCEEEECcHHHHHHHHhCC----------cccccccEEEEecHHHHHhcchHHHHH
Confidence 23333433221 2223333456899999998765433211 123457899999999985432 3455
Q ss_pred HHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001524 548 KSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 626 (1060)
Q Consensus 548 kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l 626 (1060)
..+..++. .+.+++|||+-. ...++ . ..|.
T Consensus 193 ~i~~~~~~~~~~i~~SAT~~~-~~~~~---~---------------~~~~------------------------------ 223 (401)
T PTZ00424 193 DVFKKLPPDVQVALFSATMPN-EILEL---T---------------TKFM------------------------------ 223 (401)
T ss_pred HHHhhCCCCcEEEEEEecCCH-HHHHH---H---------------HHHc------------------------------
Confidence 55666644 456889999732 11111 0 0000
Q ss_pred hHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001524 627 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 706 (1060)
Q Consensus 627 ~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~ 706 (1060)
+.......... ...+.......+.+ ...
T Consensus 224 -----~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~----------------------------------------- 251 (401)
T PTZ00424 224 -----RDPKRILVKKD----ELTLEGIRQFYVAV--EKE----------------------------------------- 251 (401)
T ss_pred -----CCCEEEEeCCC----CcccCCceEEEEec--ChH-----------------------------------------
Confidence 00000000000 00000000111111 000
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHH
Q 001524 707 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 786 (1060)
Q Consensus 707 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~ 786 (1060)
..|...+..++... ...++||||.++..++.+.
T Consensus 252 ---------------------------------------------~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 252 ---------------------------------------------EWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred ---------------------------------------------HHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHH
Confidence 00122223333322 3457999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhC
Q 001524 787 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 787 ~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiG 866 (1060)
..|...++.+..+||+++..+|..+++.|++|... +|++|.++++|+|++.++.||+||++.++..+.|++||++|.|
T Consensus 285 ~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 362 (401)
T PTZ00424 285 KKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFG 362 (401)
T ss_pred HHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCC
Confidence 99999999999999999999999999999998755 8899999999999999999999999999999999999999999
Q ss_pred CcCcEEEEEEecCC
Q 001524 867 QKKDVVVYRLMTCG 880 (1060)
Q Consensus 867 Q~k~V~VyrLvt~g 880 (1060)
....+ +.|++..
T Consensus 363 ~~G~~--i~l~~~~ 374 (401)
T PTZ00424 363 RKGVA--INFVTPD 374 (401)
T ss_pred CCceE--EEEEcHH
Confidence 76544 4456554
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=1.1e-25 Score=278.10 Aligned_cols=315 Identities=16% Similarity=0.162 Sum_probs=210.9
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
...++|+|.++|..++. |+.+|+..+||.|||+....-+ +. ..+.+|||+| .+|+.++...+...+ ..
T Consensus 458 ~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPA--L~---~~GiTLVISPLiSLmqDQV~~L~~~G--I~ 526 (1195)
T PLN03137 458 NHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPA--LI---CPGITLVISPLVSLIQDQIMNLLQAN--IP 526 (1195)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHH--HH---cCCcEEEEeCHHHHHHHHHHHHHhCC--Ce
Confidence 35799999999998877 8999999999999997543222 11 1367999999 888887777776643 23
Q ss_pred EEEEcccccch-hhHHHHHh---hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH--
Q 001524 472 IREYFGTCVKT-RQYELQYV---LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ-- 545 (1060)
Q Consensus 472 v~~~~g~~~~~-~~~~~~~~---~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk-- 545 (1060)
...+.+..... ....+... ....+|+++|++.+......+.....+ .....+.+|||||||++..+...
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L-----~~~~~LslIVIDEAHcVSqWGhDFR 601 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL-----NSRGLLARFVIDEAHCVSQWGHDFR 601 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh-----hhccccceeccCcchhhhhcccchH
Confidence 33333332222 21112221 246799999999876421111000000 01233688999999999765432
Q ss_pred -HHH----HHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001524 546 -RAK----SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620 (1060)
Q Consensus 546 -~~k----al~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 620 (1060)
-++ ....++....++||||.......++...+.+..+-. |...|.
T Consensus 602 pdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v------fr~Sf~------------------------ 651 (1195)
T PLN03137 602 PDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV------FRQSFN------------------------ 651 (1195)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE------eecccC------------------------
Confidence 122 223456677899999987666666655444321111 000000
Q ss_pred HHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001524 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 700 (1060)
Q Consensus 621 ~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 700 (1060)
-|.. .+.+ ++-. .
T Consensus 652 -----------------------------RpNL-~y~V-v~k~---k--------------------------------- 664 (1195)
T PLN03137 652 -----------------------------RPNL-WYSV-VPKT---K--------------------------------- 664 (1195)
T ss_pred -----------------------------ccce-EEEE-eccc---h---------------------------------
Confidence 0000 0000 0000 0
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
..+..|..++... ..+...||||.++.
T Consensus 665 ----------------------------------------------------k~le~L~~~I~~~-~~~esgIIYC~SRk 691 (1195)
T PLN03137 665 ----------------------------------------------------KCLEDIDKFIKEN-HFDECGIIYCLSRM 691 (1195)
T ss_pred ----------------------------------------------------hHHHHHHHHHHhc-ccCCCceeEeCchh
Confidence 0011122222221 12457899999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhh
Q 001524 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860 (1060)
Q Consensus 781 ~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiG 860 (1060)
.++.+...|...|+++..|||+|+..+|..+++.|..+... +|++|.++|+|||+++++.||+|++|.++..|+|++|
T Consensus 692 e~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriG 769 (1195)
T PLN03137 692 DCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 769 (1195)
T ss_pred HHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc--EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhc
Confidence 99999999999999999999999999999999999998755 8889999999999999999999999999999999999
Q ss_pred hhhhhCCcCcEEEEE
Q 001524 861 RAYRIGQKKDVVVYR 875 (1060)
Q Consensus 861 Ra~RiGQ~k~V~Vyr 875 (1060)
|++|.|+...|+.|+
T Consensus 770 RAGRDG~~g~cILly 784 (1195)
T PLN03137 770 RAGRDGQRSSCVLYY 784 (1195)
T ss_pred ccCCCCCCceEEEEe
Confidence 999999998887664
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=1.2e-24 Score=265.71 Aligned_cols=313 Identities=18% Similarity=0.247 Sum_probs=215.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHH-HHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc---C
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG---L 468 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqai-ali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~---~ 468 (1060)
..+.|+|.+++..++. ++..|+..+||+|||++.+ .++..+........+||||| ..|+.||..++.++. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4588999999998877 7889999999999998743 33444333333457899999 889999999987764 4
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--hHH
Q 001524 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQR 546 (1060)
Q Consensus 469 ~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--sk~ 546 (1060)
...+..++|....... ........+|+|+|++.+........ +....+.+|||||||.+-+.. ..+
T Consensus 103 ~i~v~~~~gG~~~~~q--~~~l~~~~~IVVgTPgrl~d~l~r~~----------l~l~~l~~lVlDEAd~ml~~gf~~di 170 (629)
T PRK11634 103 GVNVVALYGGQRYDVQ--LRALRQGPQIVVGTPGRLLDHLKRGT----------LDLSKLSGLVLDEADEMLRMGFIEDV 170 (629)
T ss_pred CceEEEEECCcCHHHH--HHHhcCCCCEEEECHHHHHHHHHcCC----------cchhhceEEEeccHHHHhhcccHHHH
Confidence 5666666665432222 22233567899999999876543211 123347889999999986543 334
Q ss_pred HHHHHcCCCC-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhh-cccccCCCcchhhHHHHhhHHHHHHHHH
Q 001524 547 AKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYE-LPILRGNDKHALDREKRIGSAVAKELRE 624 (1060)
Q Consensus 547 ~kal~~l~a~-~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~-~pi~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (1060)
...+..++.. ..+++|||.-. .+.++ .. .|. .|.
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~-~i~~i---~~---------------~~l~~~~------------------------- 206 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPE-AIRRI---TR---------------RFMKEPQ------------------------- 206 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCCh-hHHHH---HH---------------HHcCCCe-------------------------
Confidence 5555666554 45889999621 11111 10 000 000
Q ss_pred HhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001524 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 704 (1060)
Q Consensus 625 ~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~ 704 (1060)
.+.-... ....+... ...+ ..
T Consensus 207 ------------~i~i~~~---~~~~~~i~-q~~~-~v------------------------------------------ 227 (629)
T PRK11634 207 ------------EVRIQSS---VTTRPDIS-QSYW-TV------------------------------------------ 227 (629)
T ss_pred ------------EEEccCc---cccCCceE-EEEE-Ee------------------------------------------
Confidence 0000000 00000000 0000 00
Q ss_pred hhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHH
Q 001524 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 784 (1060)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~ 784 (1060)
....|...|..+|... ...++||||..+..++.
T Consensus 228 ---------------------------------------------~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~ 260 (629)
T PRK11634 228 ---------------------------------------------WGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLE 260 (629)
T ss_pred ---------------------------------------------chhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHH
Confidence 0122455566666543 34689999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhh
Q 001524 785 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 864 (1060)
Q Consensus 785 L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~R 864 (1060)
|...|...|+.+..+||.+++.+|.+++++|+.+... +||+|.++++|||++.+++||+||+|.++..|.|++||++|
T Consensus 261 l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 261 VAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338 (629)
T ss_pred HHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC
Confidence 9999999999999999999999999999999998755 89999999999999999999999999999999999999999
Q ss_pred hCCcCcEEEE
Q 001524 865 IGQKKDVVVY 874 (1060)
Q Consensus 865 iGQ~k~V~Vy 874 (1060)
.|....++++
T Consensus 339 aGr~G~ai~~ 348 (629)
T PRK11634 339 AGRAGRALLF 348 (629)
T ss_pred CCCcceEEEE
Confidence 9987655443
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=6.8e-25 Score=253.80 Aligned_cols=319 Identities=22% Similarity=0.256 Sum_probs=224.9
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhh------ccCCCceEEEeC-cccHHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFH------SRLIKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~------~~~~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
...+.|.|..+...++. |+.++....||+|||+. .|..+..+.. ......+||++| .-|..|...++.
T Consensus 111 ~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~ 186 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAR 186 (519)
T ss_pred CCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHH
Confidence 44577889887766666 99999999999999986 3334444432 122335999999 889999999999
Q ss_pred HhcCCCc--EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC-
Q 001524 465 AVGLSAK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN- 541 (1060)
Q Consensus 465 k~~~~~~--v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN- 541 (1060)
.++.... ..+++|......+ .....+..+|+|.|++.+........ .......|+|+|||.++-.
T Consensus 187 ~~~~~~~~~~~cvyGG~~~~~Q--~~~l~~gvdiviaTPGRl~d~le~g~----------~~l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 187 EFGKSLRLRSTCVYGGAPKGPQ--LRDLERGVDVVIATPGRLIDLLEEGS----------LNLSRVTYLVLDEADRMLDM 254 (519)
T ss_pred HHcCCCCccEEEEeCCCCccHH--HHHHhcCCcEEEeCChHHHHHHHcCC----------ccccceeEEEeccHHhhhcc
Confidence 9987766 4555555443332 33345678999999999987665332 2345688999999999854
Q ss_pred -cchHHHHHHHcC-CCCc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHH
Q 001524 542 -PSTQRAKSLLEI-PSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618 (1060)
Q Consensus 542 -~~sk~~kal~~l-~a~~-RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 618 (1060)
...++-+.+.++ ++.+ .++-|||-- .
T Consensus 255 GFe~qI~~Il~~i~~~~rQtlm~saTwp----~----------------------------------------------- 283 (519)
T KOG0331|consen 255 GFEPQIRKILSQIPRPDRQTLMFSATWP----K----------------------------------------------- 283 (519)
T ss_pred ccHHHHHHHHHhcCCCcccEEEEeeecc----H-----------------------------------------------
Confidence 345666667777 3332 466666631 0
Q ss_pred HHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHh
Q 001524 619 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKIC 698 (1060)
Q Consensus 619 ~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic 698 (1060)
..+.+-.+|+-.-.+-. +... ..+.+-...+|+.
T Consensus 284 --~v~~lA~~fl~~~~~i~-------------------ig~~-------------------------~~~~a~~~i~qiv 317 (519)
T KOG0331|consen 284 --EVRQLAEDFLNNPIQIN-------------------VGNK-------------------------KELKANHNIRQIV 317 (519)
T ss_pred --HHHHHHHHHhcCceEEE-------------------ecch-------------------------hhhhhhcchhhhh
Confidence 11111111111000000 0000 0000001111110
Q ss_pred cChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhc-cCCCceEEEec
Q 001524 699 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI-PEGHNVLIFSQ 777 (1060)
Q Consensus 699 ~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~-~~g~KvLIFsq 777 (1060)
. .. ....|...|..+|..+. ..+.|+||||.
T Consensus 318 e-----------------------------------------------~~-~~~~K~~~l~~lL~~~~~~~~~KvIIFc~ 349 (519)
T KOG0331|consen 318 E-----------------------------------------------VC-DETAKLRKLGKLLEDISSDSEGKVIIFCE 349 (519)
T ss_pred h-----------------------------------------------hc-CHHHHHHHHHHHHHHHhccCCCcEEEEec
Confidence 0 00 02457888888888876 45679999999
Q ss_pred cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhh
Q 001524 778 TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857 (1060)
Q Consensus 778 ~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q 857 (1060)
++.+++.|...|...++++.-|||..++.+|..+++.|++|... +|++|.++++||++.+.++||+||+|-|...|+|
T Consensus 350 tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~--vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVH 427 (519)
T KOG0331|consen 350 TKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP--VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVH 427 (519)
T ss_pred chhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc--eEEEcccccccCCCccccEEEeCCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999866 9999999999999999999999999999999999
Q ss_pred hhhhhhhhCCcCcEEEE
Q 001524 858 SVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 858 AiGRa~RiGQ~k~V~Vy 874 (1060)
|+||++|.|++-..+.+
T Consensus 428 RiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 428 RIGRTGRAGKKGTAITF 444 (519)
T ss_pred hcCccccCCCCceEEEE
Confidence 99999999988765543
No 44
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.4e-25 Score=238.00 Aligned_cols=323 Identities=21% Similarity=0.288 Sum_probs=239.2
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCC
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~ 470 (1060)
...+.+.|.+++...+. |+.+|.+.+||+|||.. +|-++..++..+..-.+||++| .-|..|....|+.++.+.
T Consensus 81 ~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred cCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 34456789999999888 89999999999999998 7778888888777778999999 777788888899886554
Q ss_pred --cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--hHH
Q 001524 471 --KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQR 546 (1060)
Q Consensus 471 --~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--sk~ 546 (1060)
++.+..|....... .....++.+|+|.|++.+..+....+.. ......++|+|||.++.|.. ..+
T Consensus 157 glr~~~lvGG~~m~~q--~~~L~kkPhilVaTPGrL~dhl~~Tkgf---------~le~lk~LVlDEADrlLd~dF~~~l 225 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQ--ANQLSKKPHILVATPGRLWDHLENTKGF---------SLEQLKFLVLDEADRLLDMDFEEEL 225 (476)
T ss_pred CeEEEEEecCchHHHH--HHHhhcCCCEEEeCcHHHHHHHHhccCc---------cHHHhHHHhhchHHhhhhhhhHHHH
Confidence 45555665543332 3334567899999999998877644332 23446789999999998855 457
Q ss_pred HHHHHcCCCCce-EEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 547 AKSLLEIPSAHR-IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 547 ~kal~~l~a~~R-ilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
-+.++.++..++ ++.|||-.. +...|.
T Consensus 226 d~ILk~ip~erqt~LfsATMt~-kv~kL~--------------------------------------------------- 253 (476)
T KOG0330|consen 226 DYILKVIPRERQTFLFSATMTK-KVRKLQ--------------------------------------------------- 253 (476)
T ss_pred HHHHHhcCccceEEEEEeecch-hhHHHH---------------------------------------------------
Confidence 778888877665 678998532 111110
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
|- .+ + -| +.|.-+. .|+ .+..|.|.. ++.
T Consensus 254 ------ra---sl-~---------~p------~~v~~s~----ky~------------------tv~~lkQ~y----lfv 282 (476)
T KOG0330|consen 254 ------RA---SL-D---------NP------VKVAVSS----KYQ------------------TVDHLKQTY----LFV 282 (476)
T ss_pred ------hh---cc-C---------CC------eEEeccc----hhc------------------chHHhhhhe----Eec
Confidence 00 00 0 00 0011000 011 011111110 000
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
..--|-..|+.+|.+. .|..+||||....+.+.+
T Consensus 283 --------------------------------------------~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~l 316 (476)
T KOG0330|consen 283 --------------------------------------------PGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFL 316 (476)
T ss_pred --------------------------------------------cccccchhHHHHHHhh--cCCcEEEEEeccchHHHH
Confidence 0123667888899877 567899999999999999
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhh
Q 001524 786 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865 (1060)
Q Consensus 786 ~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~Ri 865 (1060)
.-+|...|+....+||.|++..|..+++.|+++... +|++|.++++|||++.++.||+||.|-+...|++|+||++|.
T Consensus 317 a~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRa 394 (476)
T KOG0330|consen 317 ALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS--ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARA 394 (476)
T ss_pred HHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc--EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccccc
Confidence 999999999999999999999999999999999755 999999999999999999999999999999999999999999
Q ss_pred CCcCcEEEEEEecCCCHH
Q 001524 866 GQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 866 GQ~k~V~VyrLvt~gTiE 883 (1060)
| +.-.+..||+...+|
T Consensus 395 G--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 395 G--RSGKAITLVTQYDVE 410 (476)
T ss_pred C--CCcceEEEEehhhhH
Confidence 9 566677889885444
No 45
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=1.1e-22 Score=253.28 Aligned_cols=339 Identities=17% Similarity=0.224 Sum_probs=216.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC-CC
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL-SA 470 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~-~~ 470 (1060)
..|+|||.+++..+.. |++.|++.+||+|||+..+. ++..+.. .+..++|||+| +.|..|...++.++.. ..
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 3589999999998877 89999999999999987543 4444433 34468999999 8888999999988863 34
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc-chHHHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQRAKS 549 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~sk~~ka 549 (1060)
.+..+.|......+ ..+....+|+|+|++++....-... ..|. ..-....+|||||||.+.+. .+.+...
T Consensus 110 ~v~~~~Gdt~~~~r---~~i~~~~~IivtTPd~L~~~~L~~~-~~~~-----~~l~~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 110 RPATYDGDTPTEER---RWAREHARYVLTNPDMLHRGILPSH-ARWA-----RFLRRLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred EEEEEeCCCCHHHH---HHHhcCCCEEEEChHHHHHhhccch-hHHH-----HHHhcCCEEEEeChhhccCccHHHHHHH
Confidence 56667666543322 2233467999999999864221100 0000 00123589999999999763 2333333
Q ss_pred HHcC-------C-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 550 LLEI-------P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 550 l~~l-------~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
+.++ . ....+++|||. +++.++. ..+.. .|+
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~---~~l~g--------------~~~---------------------- 219 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATT--ADPAAAA---SRLIG--------------APV---------------------- 219 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCC--CCHHHHH---HHHcC--------------CCe----------------------
Confidence 3332 1 24568899995 2333331 11100 000
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCc-cceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSK-KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 700 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~-k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 700 (1060)
.++... ..|. .....+|.+.- .. . . .. .+.+ .|
T Consensus 220 ---------------~~i~~~------~~~~~~~~~~~~~p~~-~~------~-~-----~~-~~~~------~r----- 253 (742)
T TIGR03817 220 ---------------VAVTED------GSPRGARTVALWEPPL-TE------L-T-----GE-NGAP------VR----- 253 (742)
T ss_pred ---------------EEECCC------CCCcCceEEEEecCCc-cc------c-c-----cc-cccc------cc-----
Confidence 000000 0011 11112222110 00 0 0 00 0000 00
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
......|...+..++. .+.++||||+++.
T Consensus 254 -----------------------------------------------~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~ 282 (742)
T TIGR03817 254 -----------------------------------------------RSASAEAADLLADLVA----EGARTLTFVRSRR 282 (742)
T ss_pred -----------------------------------------------cchHHHHHHHHHHHHH----CCCCEEEEcCCHH
Confidence 0000113333444443 4779999999999
Q ss_pred HHHHHHHHHhhc--------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCc
Q 001524 781 MLNLIQESIGSK--------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 852 (1060)
Q Consensus 781 ~ld~L~~~L~~~--------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp 852 (1060)
.++.|...|... +.++..++|++++++|.++.++|++|... +|++|.+.++|||+...+.||+|+.|-+.
T Consensus 283 ~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~--vLVaTd~lerGIDI~~vd~VI~~~~P~s~ 360 (742)
T TIGR03817 283 GAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL--GVATTNALELGVDISGLDAVVIAGFPGTR 360 (742)
T ss_pred HHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce--EEEECchHhccCCcccccEEEEeCCCCCH
Confidence 999999887653 56788999999999999999999999755 88999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHH
Q 001524 853 STDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888 (1060)
Q Consensus 853 ~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~ 888 (1060)
..+.||+||++|.|+..-+ +.++..+..|..++.
T Consensus 361 ~~y~qRiGRaGR~G~~g~a--i~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 361 ASLWQQAGRAGRRGQGALV--VLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHhccccCCCCCCcEE--EEEeCCChHHHHHHh
Confidence 9999999999999987543 344555566665443
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=2.3e-22 Score=247.55 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=203.1
Q ss_pred ccCCCChHHHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~ 468 (1060)
+...|.++|..++..++.-.... .+.+|..+||+|||+.++..+..... ....+||++| ..|..||.+++.++++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 44569999999999988754332 36799999999999976654444333 3468999999 7788999999999876
Q ss_pred C--CcEEEEcccccchhhHHHHHhh--hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 469 S--AKIREYFGTCVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 469 ~--~~v~~~~g~~~~~~~~~~~~~~--~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
. .++..+.|......+....... +..+|+|.|+..+..... -....+||+||+|++.- .
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~---------------~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE---------------FKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc---------------ccccceEEEechhhccH--H
Confidence 4 5666666655433322222222 356999999998864321 12368999999999732 2
Q ss_pred HHHHHHHcCC---CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 545 QRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 545 k~~kal~~l~---a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
++........ ..+.+++||||+...+. +..+ +.+
T Consensus 373 qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~---~~l------------------------------------ 409 (630)
T TIGR00643 373 QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY---GDL------------------------------------ 409 (630)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc---CCc------------------------------------
Confidence 2322222333 56789999999753221 0000 000
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCc--cceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
...++. .+|. ......++.-.
T Consensus 410 -------------~~~~i~--------~~p~~r~~i~~~~~~~~------------------------------------ 432 (630)
T TIGR00643 410 -------------DTSIID--------ELPPGRKPITTVLIKHD------------------------------------ 432 (630)
T ss_pred -------------ceeeec--------cCCCCCCceEEEEeCcc------------------------------------
Confidence 000000 0111 00111111100
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
+...+...+.+....|++++|||...
T Consensus 433 ------------------------------------------------------~~~~~~~~i~~~l~~g~q~~v~~~~i 458 (630)
T TIGR00643 433 ------------------------------------------------------EKDIVYEFIEEEIAKGRQAYVVYPLI 458 (630)
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 00112223333334678899998754
Q ss_pred --------HHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC
Q 001524 780 --------KMLNLIQESIGS--KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 780 --------~~ld~L~~~L~~--~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 849 (1060)
..+..+...|.. .++++..+||+|+..+|.+++++|+++... +|++|.+.++|+|++.++.||+++++
T Consensus 459 ~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GvDiP~v~~VIi~~~~ 536 (630)
T TIGR00643 459 EESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD--ILVATTVIEVGVDVPNATVMVIEDAE 536 (630)
T ss_pred cccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECceeecCcccCCCcEEEEeCCC
Confidence 334455555654 378999999999999999999999998755 88999999999999999999999998
Q ss_pred C-CchhhhhhhhhhhhhCCcCcEEEE
Q 001524 850 W-NPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 850 W-Np~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
. +.+.+.|++||++|.|....|+++
T Consensus 537 r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 537 RFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred cCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 5 678899999999999987766543
No 47
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.5e-23 Score=245.07 Aligned_cols=315 Identities=17% Similarity=0.201 Sum_probs=222.5
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..+||-|.++|..++. ++.+|..++||.||++. .-+.+.+ ..|.+|||.| .+|+..++..+...+...
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlC-yQiPAll----~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A-- 84 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLC-YQIPALL----LEGLTLVVSPLISLMKDQVDQLEAAGIRA-- 84 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchH-hhhHHHh----cCCCEEEECchHHHHHHHHHHHHHcCcee--
Confidence 4588999999999988 89999999999999962 2222222 2579999999 999999999999876322
Q ss_pred EEEcccccchhhHHHHHh--hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-------
Q 001524 473 REYFGTCVKTRQYELQYV--LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS------- 543 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~--~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~------- 543 (1060)
......-........... .+..+++..+|+.+.+..-. ..+......+++|||||++..+.
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~----------~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL----------ELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH----------HHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 222222122222222222 23478999999998765211 01125567899999999997654
Q ss_pred hHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 544 sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.........++...+++||||.-.--..|+...|..-.+..+ ...|..|-
T Consensus 155 ~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~------~~sfdRpN------------------------ 204 (590)
T COG0514 155 RRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIF------RGSFDRPN------------------------ 204 (590)
T ss_pred HHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceE------EecCCCch------------------------
Confidence 455666666777789999999877777777777765444221 11111110
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
+|-......
T Consensus 205 ---------------------------------------------i~~~v~~~~-------------------------- 213 (590)
T COG0514 205 ---------------------------------------------LALKVVEKG-------------------------- 213 (590)
T ss_pred ---------------------------------------------hhhhhhhcc--------------------------
Confidence 000000000
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
..-.++.+|.. .....+...||||.++...+
T Consensus 214 ----------------------------------------------~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E 244 (590)
T COG0514 214 ----------------------------------------------EPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVE 244 (590)
T ss_pred ----------------------------------------------cHHHHHHHHHh---hccccCCCeEEEEeeHHhHH
Confidence 00001122222 11224456899999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.|++.|...|++...|||+++.++|+.+.++|.+++.. ++++|.|.|+|||-++...|||||+|-+...|+|-+|||+
T Consensus 245 ~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAG 322 (590)
T COG0514 245 ELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAG 322 (590)
T ss_pred HHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998866 8999999999999999999999999999999999999999
Q ss_pred hhCCcCcEEEEEEecCCCHH
Q 001524 864 RIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 864 RiGQ~k~V~VyrLvt~gTiE 883 (1060)
|.|....+.+ |...+-+.
T Consensus 323 RDG~~a~ail--l~~~~D~~ 340 (590)
T COG0514 323 RDGLPAEAIL--LYSPEDIR 340 (590)
T ss_pred CCCCcceEEE--eeccccHH
Confidence 9999887765 44444433
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=3.8e-22 Score=247.23 Aligned_cols=306 Identities=16% Similarity=0.206 Sum_probs=203.0
Q ss_pred ccCCCChHHHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~ 468 (1060)
+...|+++|..++..+..-...+ .+.||..+||+|||+.++..+..... ....+||++| ..|..|+...+.++++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 44569999999999888744332 46799999999999987655544333 3468999999 7788999999999876
Q ss_pred C--CcEEEEcccccchh-hHHHHHhh-hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 469 S--AKIREYFGTCVKTR-QYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 469 ~--~~v~~~~g~~~~~~-~~~~~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
. ..+..++|...... ......+. +..+|+|+|+..+..... -....+||+||+|++. .
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~---------------~~~l~lvVIDE~Hrfg---~ 397 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE---------------FHNLGLVIIDEQHRFG---V 397 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch---------------hcccceEEEechhhhh---H
Confidence 5 45666666654332 22222222 358999999988754211 1236899999999972 2
Q ss_pred HHHHHHHcC-CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 QRAKSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 k~~kal~~l-~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.....+... ...+.+++||||+...+. +..+- .
T Consensus 398 ~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~g------~------------------------------------ 431 (681)
T PRK10917 398 EQRLALREKGENPHVLVMTATPIPRTLA----MTAYG------D------------------------------------ 431 (681)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHcC------C------------------------------------
Confidence 233334433 346789999999642111 00000 0
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCc--cceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 701 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 701 (1060)
..-.++. .+|. +.....++..
T Consensus 432 ----------~~~s~i~--------~~p~~r~~i~~~~~~~--------------------------------------- 454 (681)
T PRK10917 432 ----------LDVSVID--------ELPPGRKPITTVVIPD--------------------------------------- 454 (681)
T ss_pred ----------CceEEEe--------cCCCCCCCcEEEEeCc---------------------------------------
Confidence 0000000 0111 0011111110
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH-
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK- 780 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~- 780 (1060)
.+...+.+.+.+....|++++|||...+
T Consensus 455 ---------------------------------------------------~~~~~~~~~i~~~~~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 455 ---------------------------------------------------SRRDEVYERIREEIAKGRQAYVVCPLIEE 483 (681)
T ss_pred ---------------------------------------------------ccHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 0111222333333457889999997532
Q ss_pred -------HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCC-
Q 001524 781 -------MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW- 850 (1060)
Q Consensus 781 -------~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W- 850 (1060)
.+..+...|... ++++..+||+|+..+|.+++++|.++... +|++|.+.++|+|+++++.||+++++.
T Consensus 484 s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID--ILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred ccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 344556666554 57899999999999999999999998755 889999999999999999999999985
Q ss_pred CchhhhhhhhhhhhhCCcCcEEE
Q 001524 851 NPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 851 Np~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
..+.+.|++||++|.|....|++
T Consensus 562 gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 562 GLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred CHHHHHHHhhcccCCCCceEEEE
Confidence 57889999999999998766654
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=3e-22 Score=253.87 Aligned_cols=329 Identities=19% Similarity=0.197 Sum_probs=205.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhcc------CCCceEEEeC-cccHHHHHHHHH-
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSR------LIKRALVVAP-KTLLSHWIKELT- 464 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~------~~k~vLIV~P-~sLl~qW~~E~~- 464 (1060)
..|+|+|..++..+.. ++++|++.+||+|||+.++. ++..+.... ....+|+|+| +.|..|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3599999999988765 88999999999999998554 343443321 1236999999 888888766433
Q ss_pred ------Hhc-------CCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEE
Q 001524 465 ------AVG-------LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYM 531 (1060)
Q Consensus 465 ------k~~-------~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~V 531 (1060)
.++ +...+.+.+|........ .......+|+|||++.+........... .-....+|
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--~~l~~~p~IlVtTPE~L~~ll~~~~~~~--------~l~~l~~V 176 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ--KMLKKPPHILITTPESLAILLNSPKFRE--------KLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--HHHhCCCCEEEecHHHHHHHhcChhHHH--------HHhcCCEE
Confidence 332 244566667765433222 1223467999999999864432111000 01246899
Q ss_pred EEcCCCcCCCcc--hHHHHH---HHcC--CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCC
Q 001524 532 ILDEGHLIKNPS--TQRAKS---LLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604 (1060)
Q Consensus 532 IlDEAH~iKN~~--sk~~ka---l~~l--~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~ 604 (1060)
|+||+|.+-+.. ...... +..+ ....+|+||||. .++.++.. |+...... +..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~---------------~~~ 236 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD---------------GEP 236 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc---------------CCC
Confidence 999999997532 222222 2222 245679999997 33444432 22111000 000
Q ss_pred cchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcC
Q 001524 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 684 (1060)
Q Consensus 605 ~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~ 684 (1060)
. ++ .+.. ..........+.++.... +..
T Consensus 237 r----------------------~~-------~iv~-------~~~~k~~~i~v~~p~~~l----~~~------------ 264 (876)
T PRK13767 237 R----------------------DC-------EIVD-------ARFVKPFDIKVISPVDDL----IHT------------ 264 (876)
T ss_pred C----------------------ce-------EEEc-------cCCCccceEEEeccCccc----ccc------------
Confidence 0 00 0000 000000011111110000 000
Q ss_pred CChHHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHh
Q 001524 685 GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 764 (1060)
Q Consensus 685 ~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~ 764 (1060)
. .......+...|.+
T Consensus 265 --------------------------------------~---------------------------~~~~~~~l~~~L~~ 279 (876)
T PRK13767 265 --------------------------------------P---------------------------AEEISEALYETLHE 279 (876)
T ss_pred --------------------------------------c---------------------------cchhHHHHHHHHHH
Confidence 0 00001112233333
Q ss_pred hccCCCceEEEeccHHHHHHHHHHHhhc------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcc
Q 001524 765 LIPEGHNVLIFSQTRKMLNLIQESIGSK------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLT 838 (1060)
Q Consensus 765 ~~~~g~KvLIFsq~~~~ld~L~~~L~~~------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt 838 (1060)
+...++++||||+++..++.+...|... +..+..+||+++.++|..+.+.|++|... +|++|.+.++|||++
T Consensus 280 ~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~--vLVaTs~Le~GIDip 357 (876)
T PRK13767 280 LIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK--VVVSSTSLELGIDIG 357 (876)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe--EEEECChHHhcCCCC
Confidence 3445778999999999999999988763 46799999999999999999999999754 888999999999999
Q ss_pred cCCEEEEeCCCCCchhhhhhhhhhhhh-CCcCcEEEEE
Q 001524 839 KADRVIVVDPAWNPSTDNQSVDRAYRI-GQKKDVVVYR 875 (1060)
Q Consensus 839 ~A~~VIi~D~~WNp~~~~QAiGRa~Ri-GQ~k~V~Vyr 875 (1060)
.++.||+|++|.+...+.||+||++|. |+.....++-
T Consensus 358 ~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 358 YIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999986 4555555554
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=5e-22 Score=253.73 Aligned_cols=365 Identities=13% Similarity=0.146 Sum_probs=209.9
Q ss_pred CCCChHHHHHHHHHHHhhcC-CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 394 NMLFPHQREGLRWLWSLHCQ-GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~-~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
..|||||.++|..+...... .+++||+++||+|||+++++++..++.....+++||||| ..|+.||..+|..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 46999999999887765544 368899999999999999999988887777789999999 7899999999998754322
Q ss_pred E--EEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc------
Q 001524 472 I--REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS------ 543 (1060)
Q Consensus 472 v--~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~------ 543 (1060)
. ....+.... .. .......+|+|+|++.+.+........ ........|++||+||||+.....
T Consensus 492 ~~~~~i~~i~~L-~~---~~~~~~~~I~iaTiQtl~~~~~~~~~~-----~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 492 QTFASIYDIKGL-ED---KFPEDETKVHVATVQGMVKRILYSDDP-----MDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cchhhhhchhhh-hh---hcccCCCCEEEEEHHHHHHhhhccccc-----cccCCCCcccEEEEECCCCCCccccccccc
Confidence 1 001110000 00 001235789999999986643211100 001123568999999999963110
Q ss_pred ----------hHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHH
Q 001524 544 ----------TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613 (1060)
Q Consensus 544 ----------sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 613 (1060)
...++.+.......+|+|||||..+. + . .|..|+.......+..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t----~--------------~----~FG~pv~~Ysl~eAI~---- 616 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT----T--------------E----IFGEPVYTYSYREAVI---- 616 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcCccEEEEecCCccch----h--------------H----HhCCeeEEeeHHHHHh----
Confidence 12334444333358899999997432 1 1 1112221111110000
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEE----ecCC-HHHHHHHHHHHhhHHHhhhcCCChH
Q 001524 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW----LRLT-SCQRQLYEAFLNSEIVLSAFDGSPL 688 (1060)
Q Consensus 614 ~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~----~~ls-~~Q~~lY~~~l~~~~~~~~~~~~~l 688 (1060)
..|++. ..|+....... +... ..+...|+..... .....
T Consensus 617 -------------DG~Lv~----------------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~-i~~~~------ 660 (1123)
T PRK11448 617 -------------DGYLID----------------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE-IDLAT------ 660 (1123)
T ss_pred -------------cCCccc----------------CcCCEEEEEEeccccccccccchhhhcchhhhh-hhhcc------
Confidence 000000 00111110000 0000 0011111110000 00000
Q ss_pred HHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc-
Q 001524 689 AALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP- 767 (1060)
Q Consensus 689 ~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~- 767 (1060)
.| .+..-....+...+. .......+++-|.+...
T Consensus 661 -----------l~--------------------d~~~~~~~~~~~~vi--------------~~~~~~~i~~~l~~~l~~ 695 (1123)
T PRK11448 661 -----------LE--------------------DEVDFEVEDFNRRVI--------------TESFNRVVCEELAKYLDP 695 (1123)
T ss_pred -----------Cc--------------------HHHhhhHHHHHHHHh--------------hHHHHHHHHHHHHHHHhc
Confidence 00 000000000000000 00011112221111211
Q ss_pred -CCCceEEEeccHHHHHHHHHHHhhc------CC---eEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCc
Q 001524 768 -EGHNVLIFSQTRKMLNLIQESIGSK------GY---KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTL 837 (1060)
Q Consensus 768 -~g~KvLIFsq~~~~ld~L~~~L~~~------gi---~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNL 837 (1060)
.+.|+||||.++..++.+...|... ++ .+..++|.++ ++.+++++|.++. .+.+++++...++|+|.
T Consensus 696 ~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~TG~Dv 772 (1123)
T PRK11448 696 TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTTGIDV 772 (1123)
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEecccccCCCc
Confidence 2369999999999999888877652 22 4567999986 6788999999865 44688999999999999
Q ss_pred ccCCEEEEeCCCCCchhhhhhhhhhhhhCC---cCcEEEEEEe
Q 001524 838 TKADRVIVVDPAWNPSTDNQSVDRAYRIGQ---KKDVVVYRLM 877 (1060)
Q Consensus 838 t~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ---~k~V~VyrLv 877 (1060)
+.+..||++.|+-++..+.|++||+.|..- +..+.||.++
T Consensus 773 P~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 773 PSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999999754 5556777654
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=4.1e-22 Score=250.42 Aligned_cols=308 Identities=14% Similarity=0.153 Sum_probs=204.2
Q ss_pred ccCCCChHHHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~ 468 (1060)
+...+.|.|..++..+..-...+ ...+++.+||+|||..++..+...... .+.++|+|| ..|..|+...|.+++.
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 45578999999999988744333 577999999999998766444333322 368999999 7778899999998765
Q ss_pred CCc--EEEEcccccc-hhhHHHHHhh-hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 469 SAK--IREYFGTCVK-TRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 469 ~~~--v~~~~g~~~~-~~~~~~~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
... +..+.+.... .+...+..+. +..+|||+|+..+..... -....+|||||+|++. .
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~---------------f~~L~llVIDEahrfg---v 587 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVK---------------FKDLGLLIIDEEQRFG---V 587 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCC---------------cccCCEEEeecccccc---h
Confidence 443 3344443322 2222222222 357899999976643211 1236899999999973 2
Q ss_pred HHHHHHHcCC-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 QRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 k~~kal~~l~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.....++.+. ..+.+++||||+...+.. ++.....+
T Consensus 588 ~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~----------------------------------------- 624 (926)
T TIGR00580 588 KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDL----------------------------------------- 624 (926)
T ss_pred hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCc-----------------------------------------
Confidence 3344555554 456789999997532211 00000000
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccc---eEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKN---EMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 700 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~---e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 700 (1060)
.++. .|+.. .....+....
T Consensus 625 -------------s~I~---------~~p~~R~~V~t~v~~~~~------------------------------------ 646 (926)
T TIGR00580 625 -------------SIIA---------TPPEDRLPVRTFVMEYDP------------------------------------ 646 (926)
T ss_pred -------------EEEe---------cCCCCccceEEEEEecCH------------------------------------
Confidence 0000 01100 0001111110
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
..+...+......|.+++|||+.+.
T Consensus 647 -------------------------------------------------------~~i~~~i~~el~~g~qv~if~n~i~ 671 (926)
T TIGR00580 647 -------------------------------------------------------ELVREAIRRELLRGGQVFYVHNRIE 671 (926)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCeEEEEECCcH
Confidence 0000011111225678999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC-CCchhhhh
Q 001524 781 MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDNQ 857 (1060)
Q Consensus 781 ~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~Q 857 (1060)
.++.+...|... ++++..+||.|+..+|.+++.+|.++... +|++|.+.++|+|++.+++||+++++ +..+.+.|
T Consensus 672 ~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Q 749 (926)
T TIGR00580 672 SIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQ 749 (926)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcccccccCCEEEEecCCCCCHHHHHH
Confidence 999999999874 78999999999999999999999999865 89999999999999999999999986 46678999
Q ss_pred hhhhhhhhCCcCcEEEEEEecC
Q 001524 858 SVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 858 AiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
++||++|.|+...| |.|+..
T Consensus 750 r~GRvGR~g~~g~a--ill~~~ 769 (926)
T TIGR00580 750 LRGRVGRSKKKAYA--YLLYPH 769 (926)
T ss_pred HhcCCCCCCCCeEE--EEEECC
Confidence 99999999876555 444543
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.6e-22 Score=235.98 Aligned_cols=333 Identities=21% Similarity=0.289 Sum_probs=226.8
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhh-ccCCCc-eEEEeC-cccHHHHHHHHHHhcC
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFH-SRLIKR-ALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~-~~~~k~-vLIV~P-~sLl~qW~~E~~k~~~ 468 (1060)
...+.|.|..++..++. |+..|....||+|||+. .|.++..+.. ...... +||++| .-|..|-.+++.+++.
T Consensus 49 f~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 49 FEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 34567999999998888 89999999999999976 4445555432 222222 999999 7788888888888755
Q ss_pred ---CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--
Q 001524 469 ---SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-- 543 (1060)
Q Consensus 469 ---~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-- 543 (1060)
...+..++|........ .......+|||.|+..+..+.... .+......++|+|||.++.+..
T Consensus 125 ~~~~~~~~~i~GG~~~~~q~--~~l~~~~~ivVaTPGRllD~i~~~----------~l~l~~v~~lVlDEADrmLd~Gf~ 192 (513)
T COG0513 125 NLGGLRVAVVYGGVSIRKQI--EALKRGVDIVVATPGRLLDLIKRG----------KLDLSGVETLVLDEADRMLDMGFI 192 (513)
T ss_pred hcCCccEEEEECCCCHHHHH--HHHhcCCCEEEECccHHHHHHHcC----------CcchhhcCEEEeccHhhhhcCCCH
Confidence 44555666654433332 222235899999999998655432 2345567899999999997754
Q ss_pred hHHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001524 544 TQRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622 (1060)
Q Consensus 544 sk~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 622 (1060)
..+...+..++. ...++.|||.-. . +..+..- |..
T Consensus 193 ~~i~~I~~~~p~~~qtllfSAT~~~-~---i~~l~~~---------------~l~------------------------- 228 (513)
T COG0513 193 DDIEKILKALPPDRQTLLFSATMPD-D---IRELARR---------------YLN------------------------- 228 (513)
T ss_pred HHHHHHHHhCCcccEEEEEecCCCH-H---HHHHHHH---------------Hcc-------------------------
Confidence 345555666655 455778999632 1 1111110 000
Q ss_pred HHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001524 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 702 (1060)
Q Consensus 623 ~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 702 (1060)
.|..+ .+... ......+......+.+.-
T Consensus 229 ----~p~~i-----~v~~~---~~~~~~~~i~q~~~~v~~---------------------------------------- 256 (513)
T COG0513 229 ----DPVEI-----EVSVE---KLERTLKKIKQFYLEVES---------------------------------------- 256 (513)
T ss_pred ----CCcEE-----EEccc---cccccccCceEEEEEeCC----------------------------------------
Confidence 00000 00000 000001111111111110
Q ss_pred hhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHH
Q 001524 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782 (1060)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~l 782 (1060)
...|+..|..++.... ..++||||.....+
T Consensus 257 ------------------------------------------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~ 286 (513)
T COG0513 257 ------------------------------------------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLV 286 (513)
T ss_pred ------------------------------------------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHH
Confidence 0136777777777653 23799999999999
Q ss_pred HHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhh
Q 001524 783 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862 (1060)
Q Consensus 783 d~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa 862 (1060)
+.|...|...|+++..|||++++.+|.++++.|+++... +|++|.++++||++...++||+||+|.++..|.||+||+
T Consensus 287 ~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~--vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRT 364 (513)
T COG0513 287 EELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR--VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364 (513)
T ss_pred HHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEEechhhccCCccccceeEEccCCCCHHHheeccCcc
Confidence 999999999999999999999999999999999988765 899999999999999999999999999999999999999
Q ss_pred hhhCCcCcEEEEEEecCCCHHHHHHHHHHH
Q 001524 863 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIF 892 (1060)
Q Consensus 863 ~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~ 892 (1060)
+|.|.+. ..+.|++. .-|...+.+...
T Consensus 365 gRaG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 365 GRAGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred ccCCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 9999555 44556666 224444444333
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=6.2e-21 Score=244.59 Aligned_cols=304 Identities=15% Similarity=0.164 Sum_probs=201.9
Q ss_pred cccCCCChHHHHHHHHHHHhhcC--CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG 467 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~--~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~ 467 (1060)
.+...+.|.|..++.-+..-... ....+++.+||+|||.+++-.+..... ..+.+||+|| ..|..|+...|.+++
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 34557899999999887774332 367899999999999876643333222 3468999999 667788888888765
Q ss_pred CC--CcEEEEcccccchhhHH-HHHhh-hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc
Q 001524 468 LS--AKIREYFGTCVKTRQYE-LQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543 (1060)
Q Consensus 468 ~~--~~v~~~~g~~~~~~~~~-~~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 543 (1060)
.. ..+..+.+......... +.... +..+|+|+|+..+..... -..+++|||||+|++..
T Consensus 674 ~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~---------------~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 674 ANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVK---------------WKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred ccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCC---------------HhhCCEEEEechhhcch--
Confidence 43 34444544433322222 22221 357899999987753221 12478999999999832
Q ss_pred hHHHHHHHcCC-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001524 544 TQRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622 (1060)
Q Consensus 544 sk~~kal~~l~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 622 (1060)
.....++.++ ....+++||||++..+.- ++..+..+
T Consensus 737 -~~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~---------------------------------------- 773 (1147)
T PRK10689 737 -RHKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDL---------------------------------------- 773 (1147)
T ss_pred -hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCc----------------------------------------
Confidence 2334455554 456799999997543211 00000000
Q ss_pred HHHhhHHHHHhhhhcccccCccccccccCccc---eEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKN---EMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 623 ~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~---e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
.++. .|+.. ...+.......
T Consensus 774 --------------~~I~---------~~p~~r~~v~~~~~~~~~~---------------------------------- 796 (1147)
T PRK10689 774 --------------SIIA---------TPPARRLAVKTFVREYDSL---------------------------------- 796 (1147)
T ss_pred --------------EEEe---------cCCCCCCCceEEEEecCcH----------------------------------
Confidence 0000 00000 00000000000
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
.....++.++. .+.+++|||+.+
T Consensus 797 --------------------------------------------------------~~k~~il~el~-r~gqv~vf~n~i 819 (1147)
T PRK10689 797 --------------------------------------------------------VVREAILREIL-RGGQVYYLYNDV 819 (1147)
T ss_pred --------------------------------------------------------HHHHHHHHHHh-cCCeEEEEECCH
Confidence 00011122221 466899999999
Q ss_pred HHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC-CCchhhh
Q 001524 780 KMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDN 856 (1060)
Q Consensus 780 ~~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~ 856 (1060)
..++.+...|... ++++..+||+|++.+|.+++.+|.++... +|++|.+.++|||++.+++||+.+++ |....+.
T Consensus 820 ~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~ 897 (1147)
T PRK10689 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 (1147)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEECchhhcccccccCCEEEEecCCCCCHHHHH
Confidence 9999999999887 78999999999999999999999999855 88899999999999999999998774 6888899
Q ss_pred hhhhhhhhhCCcCcEE
Q 001524 857 QSVDRAYRIGQKKDVV 872 (1060)
Q Consensus 857 QAiGRa~RiGQ~k~V~ 872 (1060)
|++||++|.|++..|+
T Consensus 898 Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 898 QLRGRVGRSHHQAYAW 913 (1147)
T ss_pred HHhhccCCCCCceEEE
Confidence 9999999998876554
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.88 E-value=4e-21 Score=241.25 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=202.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC-CCc
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL-SAK 471 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~-~~~ 471 (1060)
..|+|+|.+++..++ ..+++.|++.+||+|||+.+...+...+. ..+++|+|+| ..|+.|+.++|.++.+ +.+
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 469999999997633 24789999999999999986543333322 3578999999 8999999999988743 455
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-hHHH---
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQRA--- 547 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-sk~~--- 547 (1060)
+..+.|...... .+....+|+|+||+.+....... ..+ -...++||+||+|.+.+.. ....
T Consensus 97 v~~~tGd~~~~~-----~~l~~~~IiV~Tpek~~~llr~~--~~~--------l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 97 VGISTGDYDSRD-----EWLGDNDIIVATSEKVDSLLRNG--APW--------LDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred EEEEeCCcCccc-----cccCCCCEEEECHHHHHHHHhcC--hhh--------hhhcCEEEEECccccCCCcchHHHHHH
Confidence 666666543222 13456899999999875543311 011 1246899999999996533 1121
Q ss_pred -HHHHcC-CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 548 -KSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 548 -kal~~l-~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
..++.+ ...+.++||||+- +..++...++ ...+. ..| .|+
T Consensus 162 l~rl~~~~~~~qii~lSATl~--n~~~la~wl~---~~~~~------~~~-rpv-------------------------- 203 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATIG--NADELADWLD---AELVD------SEW-RPI-------------------------- 203 (737)
T ss_pred HHHHHhcCCCCcEEEEcccCC--CHHHHHHHhC---CCccc------CCC-CCC--------------------------
Confidence 222333 3456688999973 4566543332 11110 000 000
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEe----cCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL----RLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 701 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~----~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 701 (1060)
| ....++. .+...++.
T Consensus 204 -------------------------~--l~~~v~~~~~~~~~~~~~~--------------------------------- 223 (737)
T PRK02362 204 -------------------------D--LREGVFYGGAIHFDDSQRE--------------------------------- 223 (737)
T ss_pred -------------------------C--CeeeEecCCeecccccccc---------------------------------
Confidence 0 0000000 00000000
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHH
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ 781 (1060)
+ . . .....++..+.+ ....+.++||||+++..
T Consensus 224 -~-------------~---~---------------------------~~~~~~~~~~~~----~~~~~~~~LVF~~sr~~ 255 (737)
T PRK02362 224 -V-------------E---V---------------------------PSKDDTLNLVLD----TLEEGGQCLVFVSSRRN 255 (737)
T ss_pred -C-------------C---C---------------------------ccchHHHHHHHH----HHHcCCCeEEEEeCHHH
Confidence 0 0 0 000011122222 22367899999999988
Q ss_pred HHHHHHHHhhc------------------------------------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEE
Q 001524 782 LNLIQESIGSK------------------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 825 (1060)
Q Consensus 782 ld~L~~~L~~~------------------------------------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~L 825 (1060)
+..++..|... ...+..+||+++..+|..+.+.|++|... +|
T Consensus 256 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~--VL 333 (737)
T PRK02362 256 AEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK--VI 333 (737)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe--EE
Confidence 77766666432 13678899999999999999999998755 88
Q ss_pred EecCCcccccCcccCCEEEE----eC-----CCCCchhhhhhhhhhhhhCCcCcEEEEEEecC
Q 001524 826 LTSQVGGLGLTLTKADRVIV----VD-----PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 826 lST~agg~GLNLt~A~~VIi----~D-----~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
++|.+.+.|+|+++.+.||. || .+.++..+.|++|||+|.|....-.++-++..
T Consensus 334 vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 334 SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 99999999999999887775 77 46788999999999999998765455545543
No 55
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=212.43 Aligned_cols=124 Identities=22% Similarity=0.360 Sum_probs=112.4
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
.+.|...|+++|.+.. ..++|||.+..+.++.|++.|.+.||+++++||+.++++|+.++..|+++... +|++|.+
T Consensus 501 ed~k~kkL~eil~~~~--~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d--IlVaTDv 576 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNF--DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD--ILVATDV 576 (673)
T ss_pred chHHHHHHHHHHHhCC--CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC--EEEEecc
Confidence 3567889999998863 45799999999999999999999999999999999999999999999998766 8999999
Q ss_pred cccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 831 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
+|.||+++++++||.||..-+...|.+||||++|.|+...++. |++..
T Consensus 577 AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~ 624 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPA 624 (673)
T ss_pred cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--Eeccc
Confidence 9999999999999999999999999999999999999876543 45544
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=3.9e-20 Score=230.59 Aligned_cols=309 Identities=19% Similarity=0.190 Sum_probs=195.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC-CCc
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL-SAK 471 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~-~~~ 471 (1060)
..|+|+|.+++..+.. +++.|++.+||+|||+++...+...+.. .+++|+|+| .+|+.|+.+++.++.. +..
T Consensus 21 ~~l~~~Q~~ai~~l~~----~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~~~g~~ 94 (674)
T PRK01172 21 FELYDHQRMAIEQLRK----GENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRSLGMR 94 (674)
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHhhcCCe
Confidence 3589999999987644 7899999999999999876555444332 368999999 8899999999987643 345
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-hHHHH--
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQRAK-- 548 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-sk~~k-- 548 (1060)
+....|...... ......+|+|+|++.+........ . .-..+++||+||+|.+.... .....
T Consensus 95 v~~~~G~~~~~~-----~~~~~~dIiv~Tpek~~~l~~~~~--~--------~l~~v~lvViDEaH~l~d~~rg~~le~l 159 (674)
T PRK01172 95 VKISIGDYDDPP-----DFIKRYDVVILTSEKADSLIHHDP--Y--------IINDVGLIVADEIHIIGDEDRGPTLETV 159 (674)
T ss_pred EEEEeCCCCCCh-----hhhccCCEEEECHHHHHHHHhCCh--h--------HHhhcCEEEEecchhccCCCccHHHHHH
Confidence 555555433221 123567999999987654432111 0 12347899999999996432 11222
Q ss_pred --HHHcCC-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 549 --SLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 549 --al~~l~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
.++.+. ..+.++||||+- +..++.. |+....+. ..|
T Consensus 160 l~~~~~~~~~~riI~lSATl~--n~~~la~---wl~~~~~~------~~~------------------------------ 198 (674)
T PRK01172 160 LSSARYVNPDARILALSATVS--NANELAQ---WLNASLIK------SNF------------------------------ 198 (674)
T ss_pred HHHHHhcCcCCcEEEEeCccC--CHHHHHH---HhCCCccC------CCC------------------------------
Confidence 223333 345688999973 3444432 22211100 000
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
...|-. ..+++.. ..| .. ..
T Consensus 199 ----------------------r~vpl~-~~i~~~~------~~~---~~------~~---------------------- 218 (674)
T PRK01172 199 ----------------------RPVPLK-LGILYRK------RLI---LD------GY---------------------- 218 (674)
T ss_pred ----------------------CCCCeE-EEEEecC------eee---ec------cc----------------------
Confidence 000000 0000000 000 00 00
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
...+ ..+..++.+....+.++|||+..+..++.+
T Consensus 219 ---------------------------------------------~~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~ 252 (674)
T PRK01172 219 ---------------------------------------------ERSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDY 252 (674)
T ss_pred ---------------------------------------------cccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHH
Confidence 0000 002233344344678899999999988777
Q ss_pred HHHHhhc-------------------------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccC
Q 001524 786 QESIGSK-------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 840 (1060)
Q Consensus 786 ~~~L~~~-------------------------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A 840 (1060)
...|... ...+..+||+++..+|..+.+.|++|... +|++|.+.+.|+|+++
T Consensus 253 a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~--VLvaT~~la~Gvnipa- 329 (674)
T PRK01172 253 AEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK--VIVATPTLAAGVNLPA- 329 (674)
T ss_pred HHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEecchhhccCCCcc-
Confidence 7776542 12467889999999999999999998754 8899999999999986
Q ss_pred CEEEEeCC---------CCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 841 DRVIVVDP---------AWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 841 ~~VIi~D~---------~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
.+||++|. ++++..+.|++|||+|.|.......
T Consensus 330 ~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~ 371 (674)
T PRK01172 330 RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIG 371 (674)
T ss_pred eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceE
Confidence 68888764 3567788999999999997665333
No 57
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=6.2e-20 Score=222.80 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
...|+.++.+.+.+....+.++||||.++...+.+...|...|+++..++|.+...+|..+...|+.+. ++++|..
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~----VlIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGA----VTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCe----EEEEccc
Confidence 356999999999998889999999999999999999999999999999999999888877766666653 8899999
Q ss_pred cccccCcc---------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 831 GGLGLTLT---------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 831 gg~GLNLt---------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
+|+|+|+. +.+.||.|+++-+... .|++||++|.|....+..
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 99999998 8899999999977655 999999999998876543
No 58
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3e-21 Score=202.14 Aligned_cols=318 Identities=20% Similarity=0.223 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcEEEE
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKIREY 475 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~ 475 (1060)
..|..++.-+++ |+..|....-|+|||.+ +|+++..+--....--+||+.| ..|..|..+-+...+....+.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 358888887877 89999999999999976 5555554433333346899999 77778888888877655555443
Q ss_pred cccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc--chHHHHHHHcC
Q 001524 476 FGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--STQRAKSLLEI 553 (1060)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~sk~~kal~~l 553 (1060)
.....+.-...+...--..+||.-||+.+..-.+.. .+......++|+|||..+.|. ..+++...+.+
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv~dmikr~----------~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR----------SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchHHHHHHhc----------cccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 222222212222222234568888988775543321 123455789999999999664 46788888888
Q ss_pred C-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHHHHH
Q 001524 554 P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632 (1060)
Q Consensus 554 ~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~LR 632 (1060)
+ ....+++|||- +.|+..+.++..+++..
T Consensus 198 p~~~Qvv~~SATl----p~eilemt~kfmtdpvr---------------------------------------------- 227 (400)
T KOG0328|consen 198 PPGAQVVLVSATL----PHEILEMTEKFMTDPVR---------------------------------------------- 227 (400)
T ss_pred CCCceEEEEeccC----cHHHHHHHHHhcCCcee----------------------------------------------
Confidence 7 56778899995 23443333333222110
Q ss_pred hhhhcccccCccccccccCccceEEEEecCCHHHHH-HHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhhhh
Q 001524 633 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ-LYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAED 711 (1060)
Q Consensus 633 R~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~-lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~ 711 (1060)
..+-.-.++-+--+ +|-.
T Consensus 228 ----------------------ilvkrdeltlEgIKqf~v~--------------------------------------- 246 (400)
T KOG0328|consen 228 ----------------------ILVKRDELTLEGIKQFFVA--------------------------------------- 246 (400)
T ss_pred ----------------------EEEecCCCchhhhhhheee---------------------------------------
Confidence 00000011111000 0000
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh
Q 001524 712 VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 791 (1060)
Q Consensus 712 ~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~ 791 (1060)
.....-|+..|.+|...+ .=...+|||+.+...+.|.+.+..
T Consensus 247 ------------------------------------ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~ 288 (400)
T KOG0328|consen 247 ------------------------------------VEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRE 288 (400)
T ss_pred ------------------------------------echhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHh
Confidence 000122666666666655 233689999999999999999999
Q ss_pred cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcE
Q 001524 792 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871 (1060)
Q Consensus 792 ~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V 871 (1060)
.++.+..+||.|++++|.+++.+|+++.+. +|++|.+-++|++++..+.||+||.|-|+..|.+|+||.+|.|.+.-
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFRsg~Sr--vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv- 365 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFRSGKSR--VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV- 365 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhhcCCce--EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce-
Confidence 999999999999999999999999999866 89999999999999999999999999999999999999999998653
Q ss_pred EEEEEecCCCH
Q 001524 872 VVYRLMTCGTV 882 (1060)
Q Consensus 872 ~VyrLvt~gTi 882 (1060)
+..|+....+
T Consensus 366 -ainFVk~~d~ 375 (400)
T KOG0328|consen 366 -AINFVKSDDL 375 (400)
T ss_pred -EEEEecHHHH
Confidence 4456665543
No 59
>PRK00254 ski2-like helicase; Provisional
Probab=99.85 E-value=1.3e-19 Score=226.98 Aligned_cols=159 Identities=22% Similarity=0.188 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHH-HHHhhcCCCCeEEEcCCCCchHHHHH-HHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC-C
Q 001524 394 NMLFPHQREGLRW-LWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL-S 469 (1060)
Q Consensus 394 ~~L~phQ~egV~w-l~~~~~~~~GgILaDemGLGKTlqai-ali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~-~ 469 (1060)
..|+|+|.+++.- +. .+++.|++.+||+|||+.+. +++..+.. ..+++|+|+| ..|+.|+.++|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~~~~----~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSGVL----EGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 4689999999964 43 37899999999999999874 44444332 2468999999 8899999999887643 3
Q ss_pred CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc--chHHH
Q 001524 470 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--STQRA 547 (1060)
Q Consensus 470 ~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~sk~~ 547 (1060)
.++..+.|...... .+...++|+|+|++.+....... ..+ -..+++||+||+|.+... .....
T Consensus 96 ~~v~~~~Gd~~~~~-----~~~~~~~IiV~Tpe~~~~ll~~~--~~~--------l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 96 LRVAMTTGDYDSTD-----EWLGKYDIIIATAEKFDSLLRHG--SSW--------IKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred CEEEEEeCCCCCch-----hhhccCCEEEEcHHHHHHHHhCC--chh--------hhcCCEEEEcCcCccCCccchHHHH
Confidence 45666666543321 23457899999999876543211 111 134789999999999643 33444
Q ss_pred HHHHcCC-CCceEEeecCCCCCCHHHHHH
Q 001524 548 KSLLEIP-SAHRIIISGTPIQNNLKELWA 575 (1060)
Q Consensus 548 kal~~l~-a~~RilLTGTPiqN~l~EL~s 575 (1060)
..+..+. ..+.++||||+- |..++..
T Consensus 161 ~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 161 MILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred HHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 4455553 355688999973 3555543
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.4e-19 Score=207.28 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCC--eEEEEECCCCHHHHHH----HHHHhhcCCCccEEEEe
Q 001524 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY--KFLRIDGTTKASDRVK----IVNDFQEGDVAPIFLLT 827 (1060)
Q Consensus 754 Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi--~~~ridG~~s~~eR~~----iI~~F~~~~~~~V~LlS 827 (1060)
|...+..++..+ ..+.++|||++.+..++.+...|...+. .+..+||+++..+|.+ +++.|.++... +|++
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~--ilva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF--VIVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe--EEEE
Confidence 334444554332 3567999999999999999999988766 5999999999999976 48899987644 8999
Q ss_pred cCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcC----cEEEEEEecCC
Q 001524 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK----DVVVYRLMTCG 880 (1060)
Q Consensus 828 T~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k----~V~VyrLvt~g 880 (1060)
|.+.++|+|+ .++.||+++.+ +..+.|++||++|.|... .|+||.....+
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 9999999999 48899988765 789999999999999764 35666555444
No 61
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.8e-20 Score=205.09 Aligned_cols=370 Identities=18% Similarity=0.198 Sum_probs=225.2
Q ss_pred cCCCChHHHHHHHHHHHhhc-----CCCCeEEEcCCCCchHHH-HHHHHHHHhhcc-CCCceEEEeC-cccHHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQ-ICGFLAGLFHSR-LIKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~-----~~~GgILaDemGLGKTlq-aiali~~l~~~~-~~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
...++|-|...+.|++.-.. +.+...++.+||+|||+. +|-++..+.... .+-++|||+| ..|+.|-.++|.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 45689999999999987544 234557888999999997 555555554432 2348999999 778899999999
Q ss_pred HhcCCCcEEEEcccccchhhHHHHHhhh-----CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 465 AVGLSAKIREYFGTCVKTRQYELQYVLQ-----DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 465 k~~~~~~v~~~~g~~~~~~~~~~~~~~~-----~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
+|++...+.+..-.....-..+...... ..+|+|+|++.+..+...-.. +......++|||||.++
T Consensus 237 ~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~---------f~Lk~LrfLVIDEADRl 307 (620)
T KOG0350|consen 237 RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS---------FDLKHLRFLVIDEADRL 307 (620)
T ss_pred HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC---------cchhhceEEEechHHHH
Confidence 9998877766544443332222222222 238999999999988764322 23445689999999999
Q ss_pred CCcchHH--HHHHHcCCCCceEEeecC-------CCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhH
Q 001524 540 KNPSTQR--AKSLLEIPSAHRIIISGT-------PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDR 610 (1060)
Q Consensus 540 KN~~sk~--~kal~~l~a~~RilLTGT-------PiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 610 (1060)
.+..-+- ...+..++...++.+.+- |...-+.++.+.+.-+.|
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~---------------------------- 359 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP---------------------------- 359 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc----------------------------
Confidence 6644332 122222333333322221 011111222111100000
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHH
Q 001524 611 EKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAA 690 (1060)
Q Consensus 611 ~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~ 690 (1060)
.|..++.+-.|.+.-..+.+- ....|.. ..+..+ +..
T Consensus 360 ----------~l~kL~~satLsqdP~Kl~~l-----~l~~Prl--~~v~~~--------------------------~~~ 396 (620)
T KOG0350|consen 360 ----------PLWKLVFSATLSQDPSKLKDL-----TLHIPRL--FHVSKP--------------------------LIG 396 (620)
T ss_pred ----------hhHhhhcchhhhcChHHHhhh-----hcCCCce--EEeecc--------------------------cce
Confidence 011111111111111111000 0001100 000000 000
Q ss_pred HHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCC
Q 001524 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGH 770 (1060)
Q Consensus 691 l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~ 770 (1060)
...+-.-..|-.+. ...--|...+..+|..+ ...
T Consensus 397 ryslp~~l~~~~vv--------------------------------------------~~~~~kpl~~~~lI~~~--k~~ 430 (620)
T KOG0350|consen 397 RYSLPSSLSHRLVV--------------------------------------------TEPKFKPLAVYALITSN--KLN 430 (620)
T ss_pred eeecChhhhhceee--------------------------------------------cccccchHhHHHHHHHh--hcc
Confidence 00000000000000 00112455666777665 677
Q ss_pred ceEEEeccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEe
Q 001524 771 NVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVV 846 (1060)
Q Consensus 771 KvLIFsq~~~~ld~L~~~L~----~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~ 846 (1060)
++|+|+.+......+...|+ ..++++..+.|+.+.+.|.+.+++|+.|... +|+++.++++|+++.+.+.||.|
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~--vLIcSD~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN--VLICSDALARGIDVNDVDNVINY 508 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce--EEEehhhhhcCCcccccceEeec
Confidence 99999999999998888887 3467788899999999999999999999866 88899999999999999999999
Q ss_pred CCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHH
Q 001524 847 DPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 894 (1060)
Q Consensus 847 D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~ 894 (1060)
|||-.-..|++|+||..|.||...+ |.|+... |++.|.....|.
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G~a--~tll~~~--~~r~F~klL~~~ 552 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDGYA--ITLLDKH--EKRLFSKLLKKT 552 (620)
T ss_pred CCCchhhHHHHhhcccccccCCceE--EEeeccc--cchHHHHHHHHh
Confidence 9999999999999999999997754 4455543 566666555554
No 62
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.2e-19 Score=203.00 Aligned_cols=327 Identities=17% Similarity=0.244 Sum_probs=212.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhcc---CCCceEEEeC-cccHHH---HHHHHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSR---LIKRALVVAP-KTLLSH---WIKELTA 465 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~---~~k~vLIV~P-~sLl~q---W~~E~~k 465 (1060)
..+.|.|...|.-.+- |+..+-|..||+|||-. ++-++-.++..+ ...++||+|| .-|..| -.+.+..
T Consensus 202 ~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaq 277 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQ 277 (691)
T ss_pred CCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3456888888775555 67777888999999965 444444444432 3458999999 556544 4455555
Q ss_pred hcCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-h
Q 001524 466 VGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-T 544 (1060)
Q Consensus 466 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-s 544 (1060)
|+. ..+....|.-.-..+. .......+|||.||+.+..+....... ....+.++|+|||.++...+ .
T Consensus 278 Ft~-I~~~L~vGGL~lk~QE--~~LRs~PDIVIATPGRlIDHlrNs~sf---------~ldsiEVLvlDEADRMLeegFa 345 (691)
T KOG0338|consen 278 FTD-ITVGLAVGGLDLKAQE--AVLRSRPDIVIATPGRLIDHLRNSPSF---------NLDSIEVLVLDEADRMLEEGFA 345 (691)
T ss_pred hcc-ceeeeeecCccHHHHH--HHHhhCCCEEEecchhHHHHhccCCCc---------cccceeEEEechHHHHHHHHHH
Confidence 554 3444444433222221 223356899999999998877544322 33456789999999986533 1
Q ss_pred HHHHHHHcCCCCce--EEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001524 545 QRAKSLLEIPSAHR--IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622 (1060)
Q Consensus 545 k~~kal~~l~a~~R--ilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 622 (1060)
.-...+.++.+++| ++.|||-. ..+.||.++- + ..|+
T Consensus 346 demnEii~lcpk~RQTmLFSATMt-eeVkdL~slS-L----------------~kPv----------------------- 384 (691)
T KOG0338|consen 346 DEMNEIIRLCPKNRQTMLFSATMT-EEVKDLASLS-L----------------NKPV----------------------- 384 (691)
T ss_pred HHHHHHHHhccccccceeehhhhH-HHHHHHHHhh-c----------------CCCe-----------------------
Confidence 22334444444444 88888852 2333332210 0 0010
Q ss_pred HHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHH-HHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001524 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSC-QRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 701 (1060)
Q Consensus 623 ~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~-Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 701 (1060)
.|++..+.. -..+-+.|+.- | |
T Consensus 385 ----------------------------------rifvd~~~~~a~~LtQEFiRI------------------R-----~ 407 (691)
T KOG0338|consen 385 ----------------------------------RIFVDPNKDTAPKLTQEFIRI------------------R-----P 407 (691)
T ss_pred ----------------------------------EEEeCCccccchhhhHHHhee------------------c-----c
Confidence 111111000 00000111000 0 0
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHH
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ 781 (1060)
....-+-.+|..++.+.+ ..++|||.+....
T Consensus 408 -----------------------------------------------~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~ 438 (691)
T KOG0338|consen 408 -----------------------------------------------KREGDREAMLASLITRTF--QDRTIVFVRTKKQ 438 (691)
T ss_pred -----------------------------------------------ccccccHHHHHHHHHHhc--ccceEEEEehHHH
Confidence 000113345556666654 3479999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhh
Q 001524 782 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 861 (1060)
Q Consensus 782 ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGR 861 (1060)
+..+.-.|.-.|+++.-+||+.++.+|.+.+..|+..... +|++|.++++||++.+..+||+|+.|-+-..|.+|+||
T Consensus 439 AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 439 AHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGR 516 (691)
T ss_pred HHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC--EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhh
Confidence 9999999999999999999999999999999999998866 89999999999999999999999999999999999999
Q ss_pred hhhhCCcCcEEEEEEecCCCHHHHHHHH
Q 001524 862 AYRIGQKKDVVVYRLMTCGTVEEKIYRK 889 (1060)
Q Consensus 862 a~RiGQ~k~V~VyrLvt~gTiEE~I~~r 889 (1060)
+.|.|...- -..|+..+ |-+|++-
T Consensus 517 TARAGRaGr--sVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 517 TARAGRAGR--SVTLVGES--DRKLLKE 540 (691)
T ss_pred hhhcccCcc--eEEEeccc--cHHHHHH
Confidence 999997643 33466666 5555543
No 63
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.5e-19 Score=206.30 Aligned_cols=316 Identities=19% Similarity=0.267 Sum_probs=211.4
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHH-HHHHHHHhhccC----------CCceEEEeC-cccHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQI-CGFLAGLFHSRL----------IKRALVVAP-KTLLSHWI 460 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqa-iali~~l~~~~~----------~k~vLIV~P-~sLl~qW~ 460 (1060)
+..+.|+|+.++.-+.. |++.+.+..||+|||..- +-++.+++..+. ....||++| ..|+.|-.
T Consensus 94 ~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 45567999999987766 888899999999999763 335555554432 246899999 88999999
Q ss_pred HHHHHhcCCCcEE--EEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCc
Q 001524 461 KELTAVGLSAKIR--EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538 (1060)
Q Consensus 461 ~E~~k~~~~~~v~--~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~ 538 (1060)
.|..++.....+. ..+|. ..-........+.++|+++|++.+........ .......++|||||.+
T Consensus 170 nea~k~~~~s~~~~~~~ygg--~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~----------i~l~~~k~~vLDEADr 237 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGG--TDLGAQLRFIKRGCDILVATPGRLKDLIERGK----------ISLDNCKFLVLDEADR 237 (482)
T ss_pred HHHHhhcccccceeeeeeCC--cchhhhhhhhccCccEEEecCchhhhhhhcce----------eehhhCcEEEecchHH
Confidence 9999986544433 33333 22233344456789999999999876554322 1123345999999999
Q ss_pred CCCcc---hHHHHHHHcC-----CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhH
Q 001524 539 IKNPS---TQRAKSLLEI-----PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDR 610 (1060)
Q Consensus 539 iKN~~---sk~~kal~~l-----~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 610 (1060)
+-... -.+.+.+... ..+.-++.|||= ..
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf------------------------------p~------------- 274 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF------------------------------PK------------- 274 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccC------------------------------Ch-------------
Confidence 85421 1222222221 112224444441 10
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHh--hhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChH
Q 001524 611 EKRIGSAVAKELRERIQPYFLRR--LKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL 688 (1060)
Q Consensus 611 ~~~~~~~~~~~L~~~l~p~~LRR--~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l 688 (1060)
.+..++ .++++- +.-.|... ...-......++||.
T Consensus 275 ----------~iq~l~-~~fl~~~yi~laV~rv-----g~~~~ni~q~i~~V~--------------------------- 311 (482)
T KOG0335|consen 275 ----------EIQRLA-ADFLKDNYIFLAVGRV-----GSTSENITQKILFVN--------------------------- 311 (482)
T ss_pred ----------hhhhhH-HHHhhccceEEEEeee-----ccccccceeEeeeec---------------------------
Confidence 111111 111110 00000000 000111122223332
Q ss_pred HHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc-
Q 001524 689 AALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP- 767 (1060)
Q Consensus 689 ~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~- 767 (1060)
...|...|+++|.....
T Consensus 312 --------------------------------------------------------------~~~kr~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 312 --------------------------------------------------------------EMEKRSKLLDLLNKDDGP 329 (482)
T ss_pred --------------------------------------------------------------chhhHHHHHHHhhcccCC
Confidence 13355555566554431
Q ss_pred ------CCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCC
Q 001524 768 ------EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD 841 (1060)
Q Consensus 768 ------~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~ 841 (1060)
..++++||+..+++++.+..+|...++++..|||..++.+|.+.+..|.++... +|++|.++++|||+..+.
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p--vlVaT~VaaRGlDi~~V~ 407 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP--VLVATNVAARGLDIPNVK 407 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc--eEEEehhhhcCCCCCCCc
Confidence 124899999999999999999999999999999999999999999999999866 899999999999999999
Q ss_pred EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 842 ~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
+||+||.|-+-..|.+|+||++|.|+..-.+.+
T Consensus 408 hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 408 HVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred eeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 999999999999999999999999998776554
No 64
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=4.5e-20 Score=218.89 Aligned_cols=369 Identities=15% Similarity=0.205 Sum_probs=227.2
Q ss_pred cccCccccCCCChHHHHHHHHHHHhhcCC-CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHH
Q 001524 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKEL 463 (1060)
Q Consensus 386 ~~lp~~l~~~L~phQ~egV~wl~~~~~~~-~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~ 463 (1060)
+..|......+|+||..+|+.+.+.+..| ...+|++.||+|||.+|++++..|++++..+++|+++- .+|+.|-..+|
T Consensus 156 ~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 156 AYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred ccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHH
Confidence 34555567789999999999999988776 46899999999999999999999999999999999999 88889999999
Q ss_pred HHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc
Q 001524 464 TAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543 (1060)
Q Consensus 464 ~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 543 (1060)
..|.|............. ...+.|+|.||+++........ ..........||+||+||||+- .
T Consensus 236 ~~~~P~~~~~n~i~~~~~---------~~s~~i~lsTyqt~~~~~~~~~-----~~~~~f~~g~FDlIvIDEaHRg---i 298 (875)
T COG4096 236 EDFLPFGTKMNKIEDKKG---------DTSSEIYLSTYQTMTGRIEQKE-----DEYRRFGPGFFDLIVIDEAHRG---I 298 (875)
T ss_pred HHhCCCccceeeeecccC---------CcceeEEEeehHHHHhhhhccc-----cccccCCCCceeEEEechhhhh---H
Confidence 999998876544332211 1257899999999987654331 1122334567999999999993 3
Q ss_pred hHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 544 sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.+.++++...-...+++|||||-..--..-|.+++ ..|+.......+....
T Consensus 299 ~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~YsleeAV~DG------------ 349 (875)
T COG4096 299 YSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYSLEEAVEDG------------ 349 (875)
T ss_pred HhhhHHHHHHHHHHHHhhccCcccccccccccccC-----------------CCcceeecHHHHhhcc------------
Confidence 33444555555567788899996522111122221 1111111111111000
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
.+-|+=.-+...++-.++ --|.. ++ .+.+++...+... ...+....
T Consensus 350 -fLvpy~vi~i~~~~~~~G------~~~~~--------~s-erek~~g~~i~~d--d~~~~~~d---------------- 395 (875)
T COG4096 350 -FLVPYKVIRIDTDFDLDG------WKPDA--------GS-EREKLQGEAIDED--DQNFEARD---------------- 395 (875)
T ss_pred -ccCCCCceEEeeeccccC------cCcCc--------cc-hhhhhhccccCcc--cccccccc----------------
Confidence 000100001110110000 00000 00 1111111100000 00000000
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc---CC---CceEEEec
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP---EG---HNVLIFSQ 777 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~---~g---~KvLIFsq 777 (1060)
+.... ..-.....+...|..... .| .|+||||.
T Consensus 396 ----------------------------------------~dr~~-v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~ 434 (875)
T COG4096 396 ----------------------------------------FDRTL-VIPFRTETVARELTEYLKRGATGDEIGKTIVFAK 434 (875)
T ss_pred ----------------------------------------cchhc-cccchHHHHHHHHHHHhccccCCCccCceEEEee
Confidence 00000 000011112222222211 23 58999999
Q ss_pred cHHHHHHHHHHHhhc-----CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCc
Q 001524 778 TRKMLNLIQESIGSK-----GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 852 (1060)
Q Consensus 778 ~~~~ld~L~~~L~~~-----gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp 852 (1060)
....++.|...|... |-=+..|+|... +=+..|+.|...+..+.+.+|......|+|.+.+-.++++-+-.+.
T Consensus 435 n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSk 512 (875)
T COG4096 435 NHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSK 512 (875)
T ss_pred CcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhH
Confidence 999999999999875 223566788765 4567899999877778899999999999999999999999999999
Q ss_pred hhhhhhhhhhhhh-------CCcCc-EEEEEEe
Q 001524 853 STDNQSVDRAYRI-------GQKKD-VVVYRLM 877 (1060)
Q Consensus 853 ~~~~QAiGRa~Ri-------GQ~k~-V~VyrLv 877 (1060)
..+.|.+||+-|+ ||.|. ..|+.++
T Consensus 513 tkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 513 TKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999996 34443 4455554
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.82 E-value=2.1e-18 Score=211.59 Aligned_cols=100 Identities=20% Similarity=0.428 Sum_probs=86.4
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-----HHHHHhhc----CC-----CccEEEEecCCccc
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-----KIVNDFQE----GD-----VAPIFLLTSQVGGL 833 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~-----~iI~~F~~----~~-----~~~V~LlST~agg~ 833 (1060)
.+.++||||+.+..++.|...|...++ ..+||.+++.+|. +++++|+. +. ....+||+|+++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 567899999999999999999998887 8999999999999 78999986 32 12468999999999
Q ss_pred ccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEE
Q 001524 834 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 872 (1060)
Q Consensus 834 GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~ 872 (1060)
|||+.. ++||++..|+ ..|+||+||++|.|....+.
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~ 384 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQ 384 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCce
Confidence 999975 9999977764 79999999999999865543
No 66
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.82 E-value=6.3e-19 Score=197.84 Aligned_cols=314 Identities=19% Similarity=0.238 Sum_probs=211.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHh-----hccCCCceEEEeC-cccHHHHHHHHH---
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-----HSRLIKRALVVAP-KTLLSHWIKELT--- 464 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~-----~~~~~k~vLIV~P-~sLl~qW~~E~~--- 464 (1060)
..+.+-|...+.-++. |+..+.+.-||+|||+.-+.-+..+. ..+..-.+||||| .-|..|-..|.+
T Consensus 103 ~~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 3467778777766655 88999999999999986333222221 1223346899999 777777766554
Q ss_pred HhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-
Q 001524 465 AVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS- 543 (1060)
Q Consensus 465 k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~- 543 (1060)
++.++..+....|...... ....+.+...++|.|++.+..+...-...- -...+++|+|||.++....
T Consensus 179 ~~h~~~~v~~viGG~~~~~--e~~kl~k~~niliATPGRLlDHlqNt~~f~---------~r~~k~lvlDEADrlLd~GF 247 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSV--EADKLVKGCNILIATPGRLLDHLQNTSGFL---------FRNLKCLVLDEADRLLDIGF 247 (543)
T ss_pred hhCCCcceEEEeCCccchH--HHHHhhccccEEEeCCchHHhHhhcCCcch---------hhccceeEeecchhhhhccc
Confidence 5666666666666544332 233445588999999999987776443321 1223789999999995433
Q ss_pred -hHHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 544 -TQRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 544 -sk~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
-.+-+.+..++. +..++.|||-- ..+.++
T Consensus 248 ~~di~~Ii~~lpk~rqt~LFSAT~~-~kV~~l------------------------------------------------ 278 (543)
T KOG0342|consen 248 EEDVEQIIKILPKQRQTLLFSATQP-SKVKDL------------------------------------------------ 278 (543)
T ss_pred HHHHHHHHHhccccceeeEeeCCCc-HHHHHH------------------------------------------------
Confidence 234444444543 33488888841 111111
Q ss_pred HHHHhhHHHHHhhh--hcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 622 LRERIQPYFLRRLK--NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 622 L~~~l~p~~LRR~k--~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
. ...|+|-. -++.+.... ..-..+.|-+
T Consensus 279 ----~-~~~L~~d~~~v~~~d~~~~--------------------------------------------~The~l~Qgy- 308 (543)
T KOG0342|consen 279 ----A-RGALKRDPVFVNVDDGGER--------------------------------------------ETHERLEQGY- 308 (543)
T ss_pred ----H-HHhhcCCceEeecCCCCCc--------------------------------------------chhhcccceE-
Confidence 0 01111100 000000000 0000000000
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
.......++..+..+|++.... .|+|||+...
T Consensus 309 -----------------------------------------------vv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~ 340 (543)
T KOG0342|consen 309 -----------------------------------------------VVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTC 340 (543)
T ss_pred -----------------------------------------------EeccccchHHHHHHHHHHhcCC-ceEEEEechh
Confidence 0000223467777888877554 7999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhh
Q 001524 780 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859 (1060)
Q Consensus 780 ~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAi 859 (1060)
.+...+...|+...+++.-|||+.++..|..+..+|...+.. +|++|.++++|+|++.++.||-||||-+|..|++|+
T Consensus 341 ~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRv 418 (543)
T KOG0342|consen 341 MSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRV 418 (543)
T ss_pred hHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999998766 999999999999999999999999999999999999
Q ss_pred hhhhhhCCcCcE
Q 001524 860 DRAYRIGQKKDV 871 (1060)
Q Consensus 860 GRa~RiGQ~k~V 871 (1060)
||++|-|-+...
T Consensus 419 GRTaR~gk~G~a 430 (543)
T KOG0342|consen 419 GRTAREGKEGKA 430 (543)
T ss_pred ccccccCCCceE
Confidence 999998877654
No 67
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=5.7e-18 Score=209.31 Aligned_cols=161 Identities=21% Similarity=0.208 Sum_probs=111.4
Q ss_pred ccCCCChHHHHHHHHHHHhhcC------CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHH
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQ------GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELT 464 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~------~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~ 464 (1060)
++...++||..+|+.+...... .++|++.+++|+|||++++.++..++......++||||| ..|..||.++|.
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHH
Confidence 3455899999999998876543 368999999999999999998888776666779999999 779999999999
Q ss_pred HhcCCCcEEEEcccccchhhHHHHHhh--hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc
Q 001524 465 AVGLSAKIREYFGTCVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542 (1060)
Q Consensus 465 k~~~~~~v~~~~g~~~~~~~~~~~~~~--~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 542 (1060)
.+.+...... +. ...+...+ ...+|+|+|.+.+......... .+ .......+||+||||+.-
T Consensus 315 ~~~~~~~~~~--~s-----~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~------~~~~~~~lvIvDEaHrs~-- 378 (667)
T TIGR00348 315 SLQKDCAERI--ES-----IAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KF------PVDRKEVVVIFDEAHRSQ-- 378 (667)
T ss_pred hhCCCCCccc--CC-----HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-cc------CCCCCCEEEEEEcCcccc--
Confidence 9875321110 10 11111122 2468999999999763221100 00 001112389999999863
Q ss_pred chHHHHHHH-cCCCCceEEeecCCCCC
Q 001524 543 STQRAKSLL-EIPSAHRIIISGTPIQN 568 (1060)
Q Consensus 543 ~sk~~kal~-~l~a~~RilLTGTPiqN 568 (1060)
.....+.++ .++..++++|||||+..
T Consensus 379 ~~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 379 YGELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred chHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 233445553 57788999999999753
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.81 E-value=2.2e-19 Score=222.99 Aligned_cols=317 Identities=17% Similarity=0.160 Sum_probs=223.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..+||-|.++|...+. |+.+++-++||.||++ ++.+...-..+-+|||.| .+|+..+...+.+.+..+..
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSL-----CYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~ 333 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSL-----CYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACF 333 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceee-----EeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceee
Confidence 4589999999986666 8999999999999995 444433334468999999 99999888888554433322
Q ss_pred EEEccccc-chhhHHHHHhhh---CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch----
Q 001524 473 REYFGTCV-KTRQYELQYVLQ---DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST---- 544 (1060)
Q Consensus 473 ~~~~g~~~-~~~~~~~~~~~~---~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s---- 544 (1060)
..+... ..+....+.+.. .++|+..|++.+............+ .......++|+||||++..+..
T Consensus 334 --L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L-----~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 334 --LSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL-----YARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred --ccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc-----cCCCeeEEEEecHHHHhhhhcccccH
Confidence 222222 222222222222 4689999999998765433221111 1122368999999999977553
Q ss_pred ---HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 545 ---QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 545 ---k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
.+.....+++....|+||||....--+|+...|+.-+|.++.+ .|..|
T Consensus 407 ~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~----------------------- 457 (941)
T KOG0351|consen 407 SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP----------------------- 457 (941)
T ss_pred HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC-----------------------
Confidence 3333334456667799999998888888888888877753322 12111
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 701 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 701 (1060)
...+-|.-+.+ ..
T Consensus 458 -------------------------------NL~yeV~~k~~--~~---------------------------------- 470 (941)
T KOG0351|consen 458 -------------------------------NLKYEVSPKTD--KD---------------------------------- 470 (941)
T ss_pred -------------------------------CceEEEEeccC--cc----------------------------------
Confidence 00001111100 00
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHH
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ 781 (1060)
....+...+. ...++...||||.++.+
T Consensus 471 ----------------------------------------------------~~~~~~~~~~-~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 471 ----------------------------------------------------ALLDILEESK-LRHPDQSGIIYCLSRKE 497 (941)
T ss_pred ----------------------------------------------------chHHHHHHhh-hcCCCCCeEEEeCCcch
Confidence 0000111111 12356789999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhh
Q 001524 782 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 861 (1060)
Q Consensus 782 ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGR 861 (1060)
.+.+...|...|++...||++++..+|+.+...|..+... ++++|-|.|+|||..++..||+|..|-+...|+|..||
T Consensus 498 ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~--VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GR 575 (941)
T KOG0351|consen 498 CEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR--VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGR 575 (941)
T ss_pred HHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe--EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccc
Confidence 9999999999999999999999999999999999999844 88899999999999999999999999999999999999
Q ss_pred hhhhCCcCcEEEEEEe
Q 001524 862 AYRIGQKKDVVVYRLM 877 (1060)
Q Consensus 862 a~RiGQ~k~V~VyrLv 877 (1060)
|+|.|+...|+.|+=.
T Consensus 576 AGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 576 AGRDGLPSSCVLLYGY 591 (941)
T ss_pred cCcCCCcceeEEecch
Confidence 9999999998876433
No 69
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.2e-18 Score=188.36 Aligned_cols=318 Identities=19% Similarity=0.259 Sum_probs=220.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC--CC
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL--SA 470 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~--~~ 470 (1060)
...|.|...|..++. |+.||=+.-||+|||.. ++-++..+...+..--.||++| .-|..|-.++|...+. +.
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 457899999999998 99999999999999975 4445555544555557899999 6788888888877654 44
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch-HHHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST-QRAKS 549 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s-k~~ka 549 (1060)
++.+++|....... ........+||++|++.+..........- ........++|+|||.++-+..- ..-..
T Consensus 105 K~~vivGG~d~i~q--a~~L~~rPHvVvatPGRlad~l~sn~~~~------~~~~~rlkflVlDEADrvL~~~f~d~L~~ 176 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQ--AAILSDRPHVVVATPGRLADHLSSNLGVC------SWIFQRLKFLVLDEADRVLAGCFPDILEG 176 (442)
T ss_pred eEEEEEccHHHhhh--hhhcccCCCeEecCccccccccccCCccc------hhhhhceeeEEecchhhhhccchhhHHhh
Confidence 56666665544333 22344578999999999876554321100 00123357899999999976532 22222
Q ss_pred H-HcCCCC-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 550 L-LEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 550 l-~~l~a~-~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
+ ..++.. ..+++|||-- +++.++ +..|+..+...
T Consensus 177 i~e~lP~~RQtLlfSATit-d~i~ql---------------------~~~~i~k~~a~---------------------- 212 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATIT-DTIKQL---------------------FGCPITKSIAF---------------------- 212 (442)
T ss_pred hhccCCCccceEEEEeehh-hHHHHh---------------------hcCCcccccce----------------------
Confidence 2 234444 5699999952 222222 11222111000
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001524 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707 (1060)
Q Consensus 628 p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~ 707 (1060)
.+.. .+-.+.-..+|..++.
T Consensus 213 ---------~~e~-------------------~~~vstvetL~q~yI~-------------------------------- 232 (442)
T KOG0340|consen 213 ---------ELEV-------------------IDGVSTVETLYQGYIL-------------------------------- 232 (442)
T ss_pred ---------EEec-------------------cCCCCchhhhhhheee--------------------------------
Confidence 0000 0000011112222110
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc-CCCceEEEeccHHHHHHHH
Q 001524 708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-EGHNVLIFSQTRKMLNLIQ 786 (1060)
Q Consensus 708 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~-~g~KvLIFsq~~~~ld~L~ 786 (1060)
.....|-.+|..+|....+ +...++||+|.+...++|.
T Consensus 233 -----------------------------------------~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~ 271 (442)
T KOG0340|consen 233 -----------------------------------------VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLS 271 (442)
T ss_pred -----------------------------------------cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHH
Confidence 0123466778888887766 5667999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhC
Q 001524 787 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 787 ~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiG 866 (1060)
..|+..++.+..+|+-|++++|..++.+|+++.-. +|++|.++++||+++.++.||+||.|..|..|++|+||..|.|
T Consensus 272 ~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~--iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAG 349 (442)
T KOG0340|consen 272 MTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR--ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAG 349 (442)
T ss_pred HHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc--EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhccc
Confidence 99999999999999999999999999999998755 8899999999999999999999999999999999999999999
Q ss_pred CcCcE
Q 001524 867 QKKDV 871 (1060)
Q Consensus 867 Q~k~V 871 (1060)
.....
T Consensus 350 R~G~a 354 (442)
T KOG0340|consen 350 RKGMA 354 (442)
T ss_pred CCcce
Confidence 88764
No 70
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.7e-18 Score=195.08 Aligned_cols=126 Identities=21% Similarity=0.397 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhhcc--CCCceEEEeccHHHHHHHHHHHh----h------------------cCCeEEEEECCCCHHHHH
Q 001524 754 KISFILSLLDKLIP--EGHNVLIFSQTRKMLNLIQESIG----S------------------KGYKFLRIDGTTKASDRV 809 (1060)
Q Consensus 754 Kl~~L~~lL~~~~~--~g~KvLIFsq~~~~ld~L~~~L~----~------------------~gi~~~ridG~~s~~eR~ 809 (1060)
++..|..+|.+... ...|+|||....++.+.=..+|. . .+.++.++||+|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 34555666665532 56689999988887664444332 2 145799999999999999
Q ss_pred HHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 810 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 810 ~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
.+...|...... +|++|.++++||+|+.+..||-||||.+++.|.+|+||+.|+|-+..... |++....|
T Consensus 488 s~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 488 SVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999988755 99999999999999999999999999999999999999999999887654 34444444
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.1e-18 Score=207.46 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=111.0
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.+|..++......+.++||||.+....+.+...|...|+++..++|.+...++..+...++.+. ++++|..+
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~----VlIATdmA 486 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGA----VTVATNMA 486 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCe----EEEEccch
Confidence 56899999999887778999999999999999999999999999999999999888777777776552 88999999
Q ss_pred ccccCc---ccCC-----EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHH
Q 001524 832 GLGLTL---TKAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889 (1060)
Q Consensus 832 g~GLNL---t~A~-----~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~r 889 (1060)
|+|+|+ +.+. +||++|.|-|+..|.|++||++|.|....+..| + |.|+.++++
T Consensus 487 gRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 487 GRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred hcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 999999 5777 999999999999999999999999998765433 2 345655543
No 72
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.80 E-value=2.8e-18 Score=193.77 Aligned_cols=328 Identities=19% Similarity=0.262 Sum_probs=226.7
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccCC----CceEEEeC-cccHHHHHHHHHHh
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLI----KRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~~----k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
...+...|+..|...+. |+..|-|.-||+|||+. .+-++-.+++.+.. --+|||.| .-|..|...-+.+.
T Consensus 89 fv~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kv 164 (758)
T KOG0343|consen 89 FVKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKV 164 (758)
T ss_pred CccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHH
Confidence 34466789999887777 88888899999999987 34455555543321 25899999 77888888888775
Q ss_pred cCCC--cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-
Q 001524 467 GLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS- 543 (1060)
Q Consensus 467 ~~~~--~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~- 543 (1060)
+... ....+.|...- .+... ......|+|+|++.+..+.+.... +......++|+|||.++....
T Consensus 165 gk~h~fSaGLiiGG~~~--k~E~e-Ri~~mNILVCTPGRLLQHmde~~~---------f~t~~lQmLvLDEADR~LDMGF 232 (758)
T KOG0343|consen 165 GKHHDFSAGLIIGGKDV--KFELE-RISQMNILVCTPGRLLQHMDENPN---------FSTSNLQMLVLDEADRMLDMGF 232 (758)
T ss_pred hhccccccceeecCchh--HHHHH-hhhcCCeEEechHHHHHHhhhcCC---------CCCCcceEEEeccHHHHHHHhH
Confidence 4322 22223333221 11121 245779999999999887764332 245567899999999986533
Q ss_pred -hHHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 544 -TQRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 544 -sk~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
..+...+.+|+. +..++.|||+. ++..+|.-| .+-+|..
T Consensus 233 k~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~------------------------------------- 273 (758)
T KOG0343|consen 233 KKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-SLKDPVY------------------------------------- 273 (758)
T ss_pred HHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh-hcCCCcE-------------------------------------
Confidence 223334455654 44689999995 344444221 1111211
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCccceEEEEec-----CCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR-----LTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK 696 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~-----ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk 696 (1060)
|++. -+|.+. +|
T Consensus 274 ------------------------------------vsvhe~a~~atP~~L---------------------------~Q 290 (758)
T KOG0343|consen 274 ------------------------------------VSVHENAVAATPSNL---------------------------QQ 290 (758)
T ss_pred ------------------------------------EEEeccccccChhhh---------------------------hh
Confidence 1111 011100 00
Q ss_pred HhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEe
Q 001524 697 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776 (1060)
Q Consensus 697 ic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFs 776 (1060)
.. .....--|+.+|...|..+ ...|.|||.
T Consensus 291 ~y------------------------------------------------~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~ 320 (758)
T KOG0343|consen 291 SY------------------------------------------------VIVPLEDKIDMLWSFIKSH--LKKKSIVFL 320 (758)
T ss_pred eE------------------------------------------------EEEehhhHHHHHHHHHHhc--cccceEEEE
Confidence 00 0001234788888888887 455899999
Q ss_pred ccHHHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchh
Q 001524 777 QTRKMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854 (1060)
Q Consensus 777 q~~~~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~ 854 (1060)
.+.+.+..+...+... |++...++|+|++..|.++..+|.... .++|.+|.++++||+++.++.||-||.|-+-.+
T Consensus 321 SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~t 398 (758)
T KOG0343|consen 321 SSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDT 398 (758)
T ss_pred ehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhhhccCCCcccceEEEecCchhHHH
Confidence 9999999998888775 999999999999999999999999865 469999999999999999999999999999999
Q ss_pred hhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHH
Q 001524 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893 (1060)
Q Consensus 855 ~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K 893 (1060)
|++|+||+.|.+...+..+| + .-+-||.+..+...|
T Consensus 399 YIHRvGRtAR~~~~G~sll~--L-~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 399 YIHRVGRTARYKERGESLLM--L-TPSEEEAMLKKLQKK 434 (758)
T ss_pred HHHHhhhhhcccCCCceEEE--E-cchhHHHHHHHHHHc
Confidence 99999999999988887653 2 334567777666555
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.80 E-value=4.5e-18 Score=207.56 Aligned_cols=337 Identities=19% Similarity=0.160 Sum_probs=221.5
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhcc-C----CCceEEEeC-cccHHHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSR-L----IKRALVVAP-KTLLSHWIKELTA 465 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~-~----~k~vLIV~P-~sLl~qW~~E~~k 465 (1060)
...|+|+|+.++..+.+ |++.++..|||+|||..|+. ++..++... . .-.+|.|+| +.|......-+..
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 66799999999988877 99999999999999998764 444555442 1 125899999 7777666666666
Q ss_pred hc--CCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc
Q 001524 466 VG--LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543 (1060)
Q Consensus 466 ~~--~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 543 (1060)
|+ .+..+.+-+|......+. ....+..+|+|||++.+.-....-+...+ -....+||+||.|.+.+..
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~--r~~~~PPdILiTTPEsL~lll~~~~~r~~--------l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQ--KMLKNPPHILITTPESLAILLNSPKFREL--------LRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHcCCccceecCCCChHHhh--hccCCCCcEEEeChhHHHHHhcCHHHHHH--------hcCCcEEEeehhhhhhccc
Confidence 54 344555666665543332 22346789999999998654432211111 1236789999999997643
Q ss_pred --hHHHHHHHcC---C-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHH
Q 001524 544 --TQRAKSLLEI---P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 617 (1060)
Q Consensus 544 --sk~~kal~~l---~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 617 (1060)
++++-.+.++ . .-.||+||||-- ++.++ .+|+.+.-.
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~-------------------------------- 208 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD-------------------------------- 208 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC--------------------------------
Confidence 4555555443 3 356899999953 44443 333322110
Q ss_pred HHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHH
Q 001524 618 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKI 697 (1060)
Q Consensus 618 ~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrki 697 (1060)
...+. .....++.++.+.++-......
T Consensus 209 -----------------~~~Iv-------~~~~~k~~~i~v~~p~~~~~~~----------------------------- 235 (814)
T COG1201 209 -----------------PCEIV-------DVSAAKKLEIKVISPVEDLIYD----------------------------- 235 (814)
T ss_pred -----------------ceEEE-------EcccCCcceEEEEecCCccccc-----------------------------
Confidence 00110 0112222222222221110000
Q ss_pred hcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEec
Q 001524 698 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 777 (1060)
Q Consensus 698 c~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq 777 (1060)
.|+ ...-+..+.++++ +...+|||++
T Consensus 236 -~~~-------------------------------------------------~~~~~~~i~~~v~----~~~ttLIF~N 261 (814)
T COG1201 236 -EEL-------------------------------------------------WAALYERIAELVK----KHRTTLIFTN 261 (814)
T ss_pred -cch-------------------------------------------------hHHHHHHHHHHHh----hcCcEEEEEe
Confidence 000 0111223333443 3447999999
Q ss_pred cHHHHHHHHHHHhhcC-CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhh
Q 001524 778 TRKMLNLIQESIGSKG-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856 (1060)
Q Consensus 778 ~~~~ld~L~~~L~~~g-i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 856 (1060)
.+.+.+.+...|+..+ ..+..-||+++.++|..+-++|++|.-. .+++|.....|||....+.||+|.+|-.-+...
T Consensus 262 TR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr--avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 262 TRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK--AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred ChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce--EEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 9999999999999986 8999999999999999999999999843 677889999999999999999999999999999
Q ss_pred hhhhhhh-hhCCcCcEEEEEEecCCCHHHHHHHHHHHH
Q 001524 857 QSVDRAY-RIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893 (1060)
Q Consensus 857 QAiGRa~-RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K 893 (1060)
||+||++ |+|....- ++++.+ .++.+-.....+
T Consensus 340 QRiGRsgHr~~~~Skg---~ii~~~-r~dllE~~vi~~ 373 (814)
T COG1201 340 QRIGRAGHRLGEVSKG---IIIAED-RDDLLECLVLAD 373 (814)
T ss_pred HhccccccccCCcccE---EEEecC-HHHHHHHHHHHH
Confidence 9999994 56654443 334444 555554444433
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2.3e-17 Score=198.47 Aligned_cols=129 Identities=12% Similarity=0.186 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.+|.+++..+...+.++||||.+....+.|...|...|+++..++|.+. +|++.+..|...... ++|+|.++
T Consensus 456 ~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVATdmA 531 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVATNMA 531 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEccch
Confidence 45899999999988777889999999999999999999999999999999865 566666666655433 88999999
Q ss_pred ccccCcc---cCC-----EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHH
Q 001524 832 GLGLTLT---KAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889 (1060)
Q Consensus 832 g~GLNLt---~A~-----~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~r 889 (1060)
|+|+|+. .+. +||+||.|-|+..|.|++||++|.|....+..| + |.|+.++.+
T Consensus 532 gRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~ 592 (656)
T PRK12898 532 GRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQS 592 (656)
T ss_pred hcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHh
Confidence 9999998 454 999999999999999999999999987665433 2 446666654
No 75
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.79 E-value=1e-17 Score=216.25 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=86.0
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcC---------------------------------CeEEEEECCCCHHHHHHHHHH
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKG---------------------------------YKFLRIDGTTKASDRVKIVND 814 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~g---------------------------------i~~~ridG~~s~~eR~~iI~~ 814 (1060)
.+.++||||+++..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124578899999999999999
Q ss_pred hhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhh
Q 001524 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865 (1060)
Q Consensus 815 F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~Ri 865 (1060)
|++|... +|++|.+.+.|||+..++.||+|+.|.+...+.|++||++|.
T Consensus 323 fK~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9999854 889999999999999999999999999999999999999985
No 76
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=3.1e-17 Score=183.02 Aligned_cols=318 Identities=17% Similarity=0.203 Sum_probs=213.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHh-hcc---CCC--ceEEEeC-cccHHHHH---HHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSR---LIK--RALVVAP-KTLLSHWI---KEL 463 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~-~~~---~~k--~vLIV~P-~sLl~qW~---~E~ 463 (1060)
....|-|..++..++. ++...+-..||+|||+.-+.-+.... +.. +.+ -.|||+| .-|..|.. ..|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3567899999988877 78888888999999987554443333 221 122 5799999 66665644 345
Q ss_pred HHhcCCCcEEEEcccccchhhHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc
Q 001524 464 TAVGLSAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542 (1060)
Q Consensus 464 ~k~~~~~~v~~~~g~~~~~~~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 542 (1060)
..+.++.....+.|+..-... .... .....|+|.||+.+..-...-. ..+.-....++|+|||.++...
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~D--i~~fkee~~nIlVgTPGRL~di~~~~~--------~~l~~rsLe~LVLDEADrLldm 172 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEED--IKTFKEEGPNILVGTPGRLLDILQREA--------EKLSFRSLEILVLDEADRLLDM 172 (567)
T ss_pred HHhhhccceEEEecCccHHHH--HHHHHHhCCcEEEeCchhHHHHHhchh--------hhccccccceEEecchHhHhcc
Confidence 555677777777776332222 2222 2356799999998865443211 0112234689999999999664
Q ss_pred c--hHHHHHHHcCCCCceEE-eecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 543 S--TQRAKSLLEIPSAHRII-ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 543 ~--sk~~kal~~l~a~~Ril-LTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
. ..+...+..|+.++|-+ .|||-.+. ..+ |..
T Consensus 173 gFe~~~n~ILs~LPKQRRTGLFSATq~~~-v~d---L~r----------------------------------------- 207 (567)
T KOG0345|consen 173 GFEASVNTILSFLPKQRRTGLFSATQTQE-VED---LAR----------------------------------------- 207 (567)
T ss_pred cHHHHHHHHHHhcccccccccccchhhHH-HHH---HHH-----------------------------------------
Confidence 4 45667777788888865 58875321 111 111
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
..||--...-..... .. -+|....+|.
T Consensus 208 ---------aGLRNpv~V~V~~k~---~~-------------~tPS~L~~~Y---------------------------- 234 (567)
T KOG0345|consen 208 ---------AGLRNPVRVSVKEKS---KS-------------ATPSSLALEY---------------------------- 234 (567)
T ss_pred ---------hhccCceeeeecccc---cc-------------cCchhhccee----------------------------
Confidence 111110000000000 00 0111000000
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
......-|+..|+++|... ...|+|||-.+-
T Consensus 235 -----------------------------------------------~v~~a~eK~~~lv~~L~~~--~~kK~iVFF~TC 265 (567)
T KOG0345|consen 235 -----------------------------------------------LVCEADEKLSQLVHLLNNN--KDKKCIVFFPTC 265 (567)
T ss_pred -----------------------------------------------eEecHHHHHHHHHHHHhcc--ccccEEEEecCc
Confidence 0001234778888888874 667999999998
Q ss_pred HHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhh
Q 001524 780 KMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857 (1060)
Q Consensus 780 ~~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q 857 (1060)
.+.++....|... ++.++-+||.|++.+|.+++..|....+. +|++|.++++|||+++.+.||.||||-+|..+.+
T Consensus 266 asVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvH 343 (567)
T KOG0345|consen 266 ASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVH 343 (567)
T ss_pred chHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehhhhccCCCCCceEEEecCCCCChhHHHh
Confidence 8888888887764 68899999999999999999999985545 8899999999999999999999999999999999
Q ss_pred hhhhhhhhCCcCcEEEE
Q 001524 858 SVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 858 AiGRa~RiGQ~k~V~Vy 874 (1060)
|.||++|.|......|+
T Consensus 344 R~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 344 RCGRTARAGREGNAIVF 360 (567)
T ss_pred hcchhhhccCccceEEE
Confidence 99999999998887665
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=209.30 Aligned_cols=334 Identities=19% Similarity=0.213 Sum_probs=225.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC----C
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL----S 469 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~----~ 469 (1060)
||+||.++++.++. |++.|+.-+||+|||..-+. ++..++ ..+..++|+|-| +.|...+.+.|.++.. .
T Consensus 71 lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 71 LYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred ccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 99999999999988 89999999999999988444 444444 344458999999 8888889999988743 3
Q ss_pred CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhcccc-ccCCCcccCcCCCCCCCccEEEEcCCCcCCCc-chHHH
Q 001524 470 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS-LRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQRA 547 (1060)
Q Consensus 470 ~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~-l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~sk~~ 547 (1060)
..+..|.|.....+.. ...-++.+|++|+|+|+....-. .....++ ...+.+|||||+|-+++. .|.++
T Consensus 146 v~~~~y~Gdt~~~~r~--~~~~~pp~IllTNpdMLh~~llr~~~~~~~~-------~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 146 VTFGRYTGDTPPEERR--AIIRNPPDILLTNPDMLHYLLLRNHDAWLWL-------LRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred ceeeeecCCCChHHHH--HHHhCCCCEEEeCHHHHHHHhccCcchHHHH-------HhcCcEEEEecceeccccchhHHH
Confidence 4556677766554443 22446889999999999763221 1111111 123899999999999874 45555
Q ss_pred HHHHcCC--------CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 548 KSLLEIP--------SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 548 kal~~l~--------a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
-.++++. ....|+.|||- ++..+|...+..-..
T Consensus 217 ~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f------------------- 257 (851)
T COG1205 217 LLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDF------------------- 257 (851)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcc-------------------
Confidence 5555542 33458899984 222333332221000
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccC-ccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHh
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLS-KKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKIC 698 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP-~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic 698 (1060)
..++.+. .-| .....+++.+........
T Consensus 258 ----------------~~~v~~~------g~~~~~~~~~~~~p~~~~~~~~----------------------------- 286 (851)
T COG1205 258 ----------------EVPVDED------GSPRGLRYFVRREPPIRELAES----------------------------- 286 (851)
T ss_pred ----------------eeeccCC------CCCCCceEEEEeCCcchhhhhh-----------------------------
Confidence 0000000 011 111222222222111100
Q ss_pred cChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEecc
Q 001524 699 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQT 778 (1060)
Q Consensus 699 ~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~ 778 (1060)
..-.++..+..++......|-++|+|+.+
T Consensus 287 ---------------------------------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~s 315 (851)
T COG1205 287 ---------------------------------------------------IRRSALAELATLAALLVRNGIQTLVFFRS 315 (851)
T ss_pred ---------------------------------------------------cccchHHHHHHHHHHHHHcCceEEEEEeh
Confidence 01123444555556666689999999999
Q ss_pred HHHHHHHH----HHHhhcC----CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCC
Q 001524 779 RKMLNLIQ----ESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW 850 (1060)
Q Consensus 779 ~~~ld~L~----~~L~~~g----i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W 850 (1060)
+..++.+. ..+...+ ..+..+.|++...+|.++...|+.+... ++++|.+...|+++.+.+.||.+-.|-
T Consensus 316 r~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--~~~st~AlelgidiG~ldavi~~g~P~ 393 (851)
T COG1205 316 RKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--GVIATNALELGIDIGSLDAVIAYGYPG 393 (851)
T ss_pred hhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc--EEecchhhhhceeehhhhhHhhcCCCC
Confidence 99999886 4444445 6789999999999999999999999866 899999999999999999999999888
Q ss_pred -CchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHH
Q 001524 851 -NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888 (1060)
Q Consensus 851 -Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~ 888 (1060)
+.....|+.||++|-||..-+ +...-.+-++..+..
T Consensus 394 ~s~~~~~Q~~GRaGR~~~~~l~--~~v~~~~~~d~yy~~ 430 (851)
T COG1205 394 VSVLSFRQRAGRAGRRGQESLV--LVVLRSDPLDSYYLR 430 (851)
T ss_pred chHHHHHHhhhhccCCCCCceE--EEEeCCCccchhhhh
Confidence 789999999999999955443 223336667666654
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=2.3e-17 Score=201.42 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHh-hcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDF-QEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F-~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
.+.++|||+.....++.+...|... ++.+..+||++++. ++.+++| +++. .-+|++|.++++||++.++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk--~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKN--PSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCc--eeEEeccChhhccccccCeeEEE
Confidence 4568999999999999999999887 79999999999964 5677787 4554 34899999999999999999999
Q ss_pred EeC----CC--------CCchhhhhhhhhhhhhCCcCcEEEEEEecCCCH
Q 001524 845 VVD----PA--------WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 882 (1060)
Q Consensus 845 i~D----~~--------WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTi 882 (1060)
.++ |. .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 997 31 2677889999999997 46778899988765
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=1.8e-17 Score=200.33 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.++.+.+.+....|+.|||||.+....+.|...|...|+++..++|. +.+|+..+..|..+... ++|+|..+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATnmA 463 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATNMA 463 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEeccc
Confidence 458889999888888899999999999999999999999999999999998 77999999999887755 89999999
Q ss_pred ccccCccc-------CCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 832 GLGLTLTK-------ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 832 g~GLNLt~-------A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
|+|+|+.. .-+||.++.|-|+..+.|++||++|.|.......|
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 99999987 66999999999999999999999999998775543
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=5e-17 Score=187.45 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKG--YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~g--i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 845 (1060)
++.|+|||++....++.+...|...+ +.+..++|.+++.+|.++. . ..+|++|++.++|||+... .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~--~~iLVaTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------Q--FDILLGTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------c--CCEEEEecHHhcccCCCCc-eEE-
Confidence 57899999999999999999999864 6788999999999887653 2 2388999999999999864 666
Q ss_pred eCCCCCchhhhhhhhhhh
Q 001524 846 VDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 846 ~D~~WNp~~~~QAiGRa~ 863 (1060)
++ +-++..|.||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 66 568899999999985
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=4.4e-17 Score=209.88 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhhccCCCceEEEeccHHH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEe---
Q 001524 754 KISFILSLLDKLIPEGHNVLIFSQTRKM---LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT--- 827 (1060)
Q Consensus 754 Kl~~L~~lL~~~~~~g~KvLIFsq~~~~---ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlS--- 827 (1060)
|...|.+++..+ +..+|||++.... ++.|...|...|+++..+||++ .+.+++|.+|.. +|++.+
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~-~VLVatas~ 386 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV-DVLVGVASY 386 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC-CEEEEecCC
Confidence 555666666654 4579999998766 9999999999999999999999 234699999984 445544
Q ss_pred cCCcccccCccc-CCEEEEeCCCC------CchhhhhhhhhhhhhC
Q 001524 828 SQVGGLGLTLTK-ADRVIVVDPAW------NPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 828 T~agg~GLNLt~-A~~VIi~D~~W------Np~~~~QAiGRa~RiG 866 (1060)
|.++++|||++. .++||+|+.|- ....+..++||+-++-
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhc
Confidence 789999999998 89999999998 6677888889886443
No 82
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=4.9e-17 Score=182.01 Aligned_cols=126 Identities=25% Similarity=0.413 Sum_probs=114.3
Q ss_pred chHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcc
Q 001524 753 CKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 832 (1060)
Q Consensus 753 ~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg 832 (1060)
.|+.+|...|.+....| +||||..-....+.|...|...|+.+..+||.+.+++|.+.+.+|+..... +|+.|.+..
T Consensus 453 ~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~--VlvatDvaa 529 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP--VLVATDVAA 529 (731)
T ss_pred HHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc--eEEEeeHhh
Confidence 47888888888876665 799999999999999999999999999999999999999999999998766 888999999
Q ss_pred cccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 833 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 833 ~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
+||++....+||+||....-..+.|++||.+|.|-+ -+.|.|+|.-..+
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999987 4578889876554
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.75 E-value=2.5e-16 Score=185.63 Aligned_cols=307 Identities=17% Similarity=0.216 Sum_probs=205.6
Q ss_pred cccCCCChHHHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH-HHHHHHHHHhc
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVG 467 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl-~qW~~E~~k~~ 467 (1060)
.+...|...|..++.-+..-.... .+=+|--++|+|||+.|+..+......+ .-+..++|..++ .|-...+.+|.
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G--~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG--YQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC--CeeEEeccHHHHHHHHHHHHHHHh
Confidence 355678899999998876543333 3447888999999988766555554443 678999996665 67888999998
Q ss_pred CCCc--EEEEcccccc-hhhHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc
Q 001524 468 LSAK--IREYFGTCVK-TRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543 (1060)
Q Consensus 468 ~~~~--v~~~~g~~~~-~~~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 543 (1060)
+... +....|.... .+...+..+ .+..++||-|+-.+...... .+..+||+||=||+ .
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---------------~~LgLVIiDEQHRF---G 397 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---------------HNLGLVIIDEQHRF---G 397 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---------------cceeEEEEeccccc---c
Confidence 7544 4444454332 333333333 33478999999988755432 23679999999998 3
Q ss_pred hHHHHHHHcC-C-CCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 544 TQRAKSLLEI-P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 544 sk~~kal~~l-~-a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
...-..+++- . ..+.+.||||||...+.=-
T Consensus 398 V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt------------------------------------------------ 429 (677)
T COG1200 398 VHQRLALREKGEQNPHVLVMTATPIPRTLALT------------------------------------------------ 429 (677)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH------------------------------------------------
Confidence 3333444443 3 5799999999996543210
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCcc--ceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKK--NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k--~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
++.+.+......+|+. ...+.|++... -
T Consensus 430 ----------------~fgDldvS~IdElP~GRkpI~T~~i~~~~-~--------------------------------- 459 (677)
T COG1200 430 ----------------AFGDLDVSIIDELPPGRKPITTVVIPHER-R--------------------------------- 459 (677)
T ss_pred ----------------HhccccchhhccCCCCCCceEEEEecccc-H---------------------------------
Confidence 0000011112235543 23334443221 1
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
..+.+.+.+-...|+++.+-|.-.
T Consensus 460 --------------------------------------------------------~~v~e~i~~ei~~GrQaY~VcPLI 483 (677)
T COG1200 460 --------------------------------------------------------PEVYERIREEIAKGRQAYVVCPLI 483 (677)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHcCCEEEEEeccc
Confidence 122222333333677777777644
Q ss_pred H--------HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC
Q 001524 780 K--------MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 780 ~--------~ld~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 849 (1060)
+ .+..+...|... ++++..+||.|+.+++++++.+|++++.. +|++|.+..+|+|+++|+.+||+++.
T Consensus 484 eESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~--ILVaTTVIEVGVdVPnATvMVIe~AE 561 (677)
T COG1200 484 EESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID--ILVATTVIEVGVDVPNATVMVIENAE 561 (677)
T ss_pred cccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc--EEEEeeEEEecccCCCCeEEEEechh
Confidence 3 233444555532 67899999999999999999999999877 99999999999999999999999988
Q ss_pred -CCchhhhhhhhhhhhhCCcCcEEE
Q 001524 850 -WNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 850 -WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
+--+..-|-.||++|=+...-|..
T Consensus 562 RFGLaQLHQLRGRVGRG~~qSyC~L 586 (677)
T COG1200 562 RFGLAQLHQLRGRVGRGDLQSYCVL 586 (677)
T ss_pred hhhHHHHHHhccccCCCCcceEEEE
Confidence 478899999999999777777763
No 84
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.75 E-value=2.1e-17 Score=189.00 Aligned_cols=315 Identities=17% Similarity=0.201 Sum_probs=215.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHH-HHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC---CCc
Q 001524 397 FPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL---SAK 471 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqai-ali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~---~~~ 471 (1060)
.|.|..+|..... +..-|+-.--|+|||+.-. +.+..+-.....-..+||+| .-+.-|....|.+.++ +.+
T Consensus 49 tkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 49 TKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred Cchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 4678888877766 6678999999999998632 22333333333456899999 7777888888888887 446
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch---HHHH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST---QRAK 548 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s---k~~k 548 (1060)
..+|.|........ ..+++.+|+|-|++.+........ .......++|||||.++-...+ .+..
T Consensus 125 csvfIGGT~~~~d~---~rlk~~rIvIGtPGRi~qL~el~~----------~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDL---IRLKQTRIVIGTPGRIAQLVELGA----------MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred eEEEecCchhhhhh---hhhhhceEEecCchHHHHHHHhcC----------CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 66777765433221 134678899999999876554221 2455688999999999965443 4566
Q ss_pred HHHcCCCCc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 549 SLLEIPSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 549 al~~l~a~~-RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
.+..++..+ .++.|||=-+| |.++ |...++
T Consensus 192 ii~slP~~rQv~a~SATYp~n-Ldn~------------------------------------------------Lsk~mr 222 (980)
T KOG4284|consen 192 IINSLPQIRQVAAFSATYPRN-LDNL------------------------------------------------LSKFMR 222 (980)
T ss_pred HHHhcchhheeeEEeccCchh-HHHH------------------------------------------------HHHHhc
Confidence 666776544 56799995322 1111 111111
Q ss_pred -HHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001524 628 -PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 706 (1060)
Q Consensus 628 -p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~ 706 (1060)
|.++|-...++ .|-....+++-++ ..|.-..
T Consensus 223 dp~lVr~n~~d~----------~L~GikQyv~~~~-------------------------------------s~nnsve- 254 (980)
T KOG4284|consen 223 DPALVRFNADDV----------QLFGIKQYVVAKC-------------------------------------SPNNSVE- 254 (980)
T ss_pred ccceeecccCCc----------eeechhheeeecc-------------------------------------CCcchHH-
Confidence 22222222211 1111111111111 0000000
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHH
Q 001524 707 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 786 (1060)
Q Consensus 707 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~ 786 (1060)
..--|++.|-+++..+ +-...||||....-++-|.
T Consensus 255 -------------------------------------------emrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a 289 (980)
T KOG4284|consen 255 -------------------------------------------EMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIA 289 (980)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHH
Confidence 0122666677777665 4446899999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhC
Q 001524 787 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 787 ~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiG 866 (1060)
.+|...|+++-.|.|.|++.+|.-+++.+++-.- -+|++|...++||+-..+|.||++|+|-+..+|.+|||||+|.|
T Consensus 290 ~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~--rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG 367 (980)
T KOG4284|consen 290 THLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV--RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG 367 (980)
T ss_pred HHhhccCCCeEEeccccchhHHHHHHHHhhhceE--EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccc
Confidence 9999999999999999999999999999987542 38999999999999999999999999999999999999999999
Q ss_pred CcCcEE
Q 001524 867 QKKDVV 872 (1060)
Q Consensus 867 Q~k~V~ 872 (1060)
...-.+
T Consensus 368 ~~G~aV 373 (980)
T KOG4284|consen 368 AHGAAV 373 (980)
T ss_pred ccceeE
Confidence 876543
No 85
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.5e-17 Score=188.06 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=93.2
Q ss_pred CceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC
Q 001524 770 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 770 ~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 849 (1060)
.++||||++.+.+..|.-+|+..+++...+|..|.+++|.+-+++|.+.++. +|++|.++++||+++++.|||+|..|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeecC
Confidence 3799999999999999999999999999999999999999999999998765 99999999999999999999999999
Q ss_pred CCchhhhhhhhhhhhhCCcC
Q 001524 850 WNPSTDNQSVDRAYRIGQKK 869 (1060)
Q Consensus 850 WNp~~~~QAiGRa~RiGQ~k 869 (1060)
.....|++|-||+.|.+...
T Consensus 542 rtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred CccceeEecccccccccCCC
Confidence 99999999999999988644
No 86
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=7e-17 Score=185.54 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHH-hhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI-GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L-~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
-+|+.++.+++....++ .+|||.|+.+.+..|...| ...++.+..|||..++.+|.+.+++|+.|... +|++|.+
T Consensus 372 ~~K~lA~rq~v~~g~~P--P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw--vLicTdl 447 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFKP--PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW--VLICTDL 447 (593)
T ss_pred hhHHHHHHHHHhccCCC--CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee--EEEehhh
Confidence 56888888888887555 6999999999999999999 67799999999999999999999999999977 8999999
Q ss_pred cccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 831 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
.++|+++.+++.||+||.|-+-..|++++||++|.|+....+.
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Ait 490 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAIT 490 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEE
Confidence 9999999999999999999999999999999999999876543
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.73 E-value=1.4e-16 Score=175.12 Aligned_cols=321 Identities=16% Similarity=0.193 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcEEEEc
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKIREYF 476 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~~ 476 (1060)
|-|..++.-+.. ......++++||.||++ ++.+...-..+-++||.| ..|+..+++.+.+.-....-....
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSL-----CyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSL-----CYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSK 94 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhh-----hhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcch
Confidence 569999887776 35678999999999995 222222112357899999 788888999887743211111100
Q ss_pred ccccchhhHH---HHHhhhCCCEEEeeHHHHHhcc-----ccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH---
Q 001524 477 GTCVKTRQYE---LQYVLQDKGVLLTTYDIVRNNS-----KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ--- 545 (1060)
Q Consensus 477 g~~~~~~~~~---~~~~~~~~~VvItTy~~l~~~~-----~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk--- 545 (1060)
.+...|... +........++.+|+++..... +.+. ......|+|+||||++..+...
T Consensus 95 -lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~-----------~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 95 -LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA-----------NRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred -hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh-----------hhceeeeEEechhhhHhhhccccCc
Confidence 111122222 2222334578999998875432 2221 2334679999999999765542
Q ss_pred ---HHHHHHcC-CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001524 546 ---RAKSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 546 ---~~kal~~l-~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
..-+++.. ....-++||||....--+|+|..|.+-.|-. .|..|-.+.
T Consensus 163 DYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA---------iFkTP~FR~------------------- 214 (641)
T KOG0352|consen 163 DYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVA---------IFKTPTFRD------------------- 214 (641)
T ss_pred chhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHH---------hccCcchhh-------------------
Confidence 22233332 3344567999997777788888888766631 111111110
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 701 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 701 (1060)
.-+|+....+.+ -..+..|.-.|.|.
T Consensus 215 ---------------------------------------------NLFYD~~~K~~I---------~D~~~~LaDF~~~~ 240 (641)
T KOG0352|consen 215 ---------------------------------------------NLFYDNHMKSFI---------TDCLTVLADFSSSN 240 (641)
T ss_pred ---------------------------------------------hhhHHHHHHHHh---------hhHhHhHHHHHHHh
Confidence 001111111100 00111122222211
Q ss_pred hhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHH
Q 001524 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781 (1060)
Q Consensus 702 ~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ 781 (1060)
.--.+ |. .+ .-..-..-.||||..+..
T Consensus 241 LG~~~-----------------------------------------------~~---~~---~~K~~~GCGIVYCRTR~~ 267 (641)
T KOG0352|consen 241 LGKHE-----------------------------------------------KA---SQ---NKKTFTGCGIVYCRTRNE 267 (641)
T ss_pred cCChh-----------------------------------------------hh---hc---CCCCcCcceEEEeccHHH
Confidence 10000 00 00 000011236999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhh
Q 001524 782 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 861 (1060)
Q Consensus 782 ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGR 861 (1060)
.+.++-.|...|++...||.+....+|..+.+.|.++... ++++|...|+|++-+.+..||+.+++-|.+.|.|.-||
T Consensus 268 cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGR 345 (641)
T KOG0352|consen 268 CEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGR 345 (641)
T ss_pred HHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccc
Confidence 9999999999999999999999999999999999999866 88899999999999999999999999999999999999
Q ss_pred hhhhCCcCcEEEEE
Q 001524 862 AYRIGQKKDVVVYR 875 (1060)
Q Consensus 862 a~RiGQ~k~V~Vyr 875 (1060)
++|.|-..-|..|+
T Consensus 346 AGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 346 AGRDGKRSYCRLYY 359 (641)
T ss_pred cccCCCccceeeee
Confidence 99999999998875
No 88
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2.3e-16 Score=172.57 Aligned_cols=308 Identities=22% Similarity=0.277 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH--HHHHH-----hhccCCCceEEEeC-cccHHHHHHHHHHhc
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG--FLAGL-----FHSRLIKRALVVAP-KTLLSHWIKELTAVG 467 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia--li~~l-----~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~ 467 (1060)
..|.|-++ |-...+|..+|-...||.|||+.-+. ++... +.....-.+||++| .-|..|-.-|..++.
T Consensus 243 PtPIqSQa----WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 243 PTPIQSQA----WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred CCcchhcc----cceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 44566553 33344589999999999999974331 11111 11233446899999 667778888888864
Q ss_pred CC-CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC--cch
Q 001524 468 LS-AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PST 544 (1060)
Q Consensus 468 ~~-~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~s 544 (1060)
-+ .+-..++|... +........+...++|.|+..+....-. .......+.|+|||||.++.. ..-
T Consensus 319 yng~ksvc~ygggn--R~eqie~lkrgveiiiatPgrlndL~~~----------n~i~l~siTYlVlDEADrMLDMgFEp 386 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGN--RNEQIEDLKRGVEIIIATPGRLNDLQMD----------NVINLASITYLVLDEADRMLDMGFEP 386 (629)
T ss_pred hcCcceEEEecCCC--chhHHHHHhcCceEEeeCCchHhhhhhc----------CeeeeeeeEEEEecchhhhhcccccH
Confidence 33 33334444332 3333445567789999999988654321 112334578999999999965 345
Q ss_pred HHHHHHHcCCCCce-EEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 QRAKSLLEIPSAHR-IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 k~~kal~~l~a~~R-ilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
++.+.+..++..+- ++-|||-
T Consensus 387 qIrkilldiRPDRqtvmTSATW---------------------------------------------------------- 408 (629)
T KOG0336|consen 387 QIRKILLDIRPDRQTVMTSATW---------------------------------------------------------- 408 (629)
T ss_pred HHHHHhhhcCCcceeeeecccC----------------------------------------------------------
Confidence 77888888866555 4456663
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEec---CCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR---LTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 700 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~---ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 700 (1060)
|--+||+....+++ ..++++- |... ...+|..
T Consensus 409 ----P~~VrrLa~sY~Ke-------------p~~v~vGsLdL~a~--------------------------~sVkQ~i-- 443 (629)
T KOG0336|consen 409 ----PEGVRRLAQSYLKE-------------PMIVYVGSLDLVAV--------------------------KSVKQNI-- 443 (629)
T ss_pred ----chHHHHHHHHhhhC-------------ceEEEecccceeee--------------------------eeeeeeE--
Confidence 11122322221111 1111110 0000 0000000
Q ss_pred hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHH
Q 001524 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 780 (1060)
Q Consensus 701 P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~ 780 (1060)
.....+.|+..+..++..+ ....|+|||+....
T Consensus 444 ----------------------------------------------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 444 ----------------------------------------------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKV 476 (629)
T ss_pred ----------------------------------------------EecccHHHHHHHHHHHHhc-CCCceEEEEEechh
Confidence 0001233554444444443 46779999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhh
Q 001524 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860 (1060)
Q Consensus 781 ~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiG 860 (1060)
++|-|..-|...|+...-+||+-.+.+|+.+++.|++|... +|++|..+++||++.+..||+.||.|.|-..|.+|+|
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr--ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvG 554 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR--ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVG 554 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE--EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhc
Confidence 99999999999999999999999999999999999999855 8999999999999999999999999999999999999
Q ss_pred hhhhhCCcCcE
Q 001524 861 RAYRIGQKKDV 871 (1060)
Q Consensus 861 Ra~RiGQ~k~V 871 (1060)
|++|.|.+..-
T Consensus 555 rtGRaGr~G~s 565 (629)
T KOG0336|consen 555 RTGRAGRTGTS 565 (629)
T ss_pred ccccCCCCcce
Confidence 99999988764
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.71 E-value=1.1e-15 Score=189.13 Aligned_cols=152 Identities=18% Similarity=0.098 Sum_probs=102.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..|.++|.+++..+.... .+...+|..+||+|||...+.++...... .+.+||++| ..|+.||.+.|.++++ ..+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 359999999998887632 34568899999999999887666555543 468999999 8899999999988654 456
Q ss_pred EEEcccccc-hhhHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc--chH---
Q 001524 473 REYFGTCVK-TRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--STQ--- 545 (1060)
Q Consensus 473 ~~~~g~~~~-~~~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~sk--- 545 (1060)
..+++.... .+...+..+ .+..+|+|.|+..+... -..+.+||+||+|...-. ...
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p-----------------~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLP-----------------FKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhccc-----------------ccCCCEEEEECCCccccccCcCCCCc
Confidence 666665433 222222222 23568999998765321 234689999999986422 111
Q ss_pred ---HHHHHHcCCCCceEEeecCCC
Q 001524 546 ---RAKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 546 ---~~kal~~l~a~~RilLTGTPi 566 (1060)
++...........+++||||.
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCC
Confidence 111112234456788999995
No 90
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.4e-17 Score=177.27 Aligned_cols=114 Identities=22% Similarity=0.345 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
+-|+..|-.|+.++.- ...||||+++...+.++..+...||.+.++|..|.++.|.++.++|++|... .|++|...
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr--nLVctDL~ 382 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR--NLVCTDLF 382 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc--eeeehhhh
Confidence 3456666666666522 3589999999999999999999999999999999999999999999999743 77888999
Q ss_pred ccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcC
Q 001524 832 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869 (1060)
Q Consensus 832 g~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k 869 (1060)
-+|+++++.|.||+||.|.|+.+|.+|+||.+|.|--.
T Consensus 383 TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 383 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred hcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 99999999999999999999999999999999999654
No 91
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=192.87 Aligned_cols=311 Identities=18% Similarity=0.133 Sum_probs=203.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHh-cCCCcE
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAV-GLSAKI 472 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~-~~~~~v 472 (1060)
.|+|+|.++|...+. .+.+.|++.|||+|||++|...|..-+..+ .++++.||| ++|..+-.++|.+| ..+.++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 799999999865544 178999999999999998776665544333 579999999 99999999999855 345677
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc-c-----hHH
Q 001524 473 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-S-----TQR 546 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~-----sk~ 546 (1060)
..+.|....... .+..++|+|+||+.+-........ + ....++||+||+|.+... . +-+
T Consensus 107 ~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~--~--------~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 107 GISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPS--W--------IEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred EEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcc--h--------hhcccEEEEeeeeecCCcccCceehhHH
Confidence 788777654332 356899999999988654432211 1 234799999999999665 1 222
Q ss_pred HHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCC-CCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001524 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625 (1060)
Q Consensus 547 ~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p-~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (1060)
++....-..-+.++||||- .|..|+...++--.. ..+.
T Consensus 172 ~r~~~~~~~~rivgLSATl--pN~~evA~wL~a~~~~~~~r--------------------------------------- 210 (766)
T COG1204 172 ARMRRLNELIRIVGLSATL--PNAEEVADWLNAKLVESDWR--------------------------------------- 210 (766)
T ss_pred HHHHhhCcceEEEEEeeec--CCHHHHHHHhCCcccccCCC---------------------------------------
Confidence 3332222234567899995 466666554442111 0000
Q ss_pred hhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001524 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 705 (1060)
Q Consensus 626 l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~ 705 (1060)
|.-++|. .|.. ....+..-...
T Consensus 211 --p~~l~~~---------------v~~~-~~~~~~~~~~k---------------------------------------- 232 (766)
T COG1204 211 --PVPLRRG---------------VPYV-GAFLGADGKKK---------------------------------------- 232 (766)
T ss_pred --CcccccC---------------Cccc-eEEEEecCccc----------------------------------------
Confidence 0001110 0000 00000000000
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 706 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
.....+...+..++....+.|..+|||++++......
T Consensus 233 -------------------------------------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 233 -------------------------------------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred -------------------------------------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHH
Confidence 0012233455666667777888999999998876666
Q ss_pred HHHHhh----c---------------------------------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEec
Q 001524 786 QESIGS----K---------------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828 (1060)
Q Consensus 786 ~~~L~~----~---------------------------------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST 828 (1060)
+..|.. . -..+..-|++++.++|+-+-+.|+.+... +|++|
T Consensus 270 A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik--Vlv~T 347 (766)
T COG1204 270 AKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK--VLVST 347 (766)
T ss_pred HHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce--EEEec
Confidence 666652 0 01256678899999999999999999866 88999
Q ss_pred CCcccccCcccCCEEEE----eC-----CCCCchhhhhhhhhhhhhCCc
Q 001524 829 QVGGLGLTLTKADRVIV----VD-----PAWNPSTDNQSVDRAYRIGQK 868 (1060)
Q Consensus 829 ~agg~GLNLt~A~~VIi----~D-----~~WNp~~~~QAiGRa~RiGQ~ 868 (1060)
...+.|+||++-..||= || -.-++..+.|..|||+|.|=.
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 99999999996544432 55 334678899999999998844
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.70 E-value=8.9e-17 Score=173.85 Aligned_cols=321 Identities=17% Similarity=0.160 Sum_probs=220.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
.++||.|+.+++.... +...+|..++|-||++ ++.+...-..+-+||||| .+|+....-.++..+.+...
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggksl-----cyqlpal~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSL-----CYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccch-----hhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 3589999999998877 8899999999999995 344433334578999999 89999999899888776554
Q ss_pred EEEcccccchhhHHHHHh--hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch------
Q 001524 473 REYFGTCVKTRQYELQYV--LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------ 544 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~--~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------ 544 (1060)
..........+....... ...+.++.+|++.+.+........ ...+....|.+|-+||.|+...+..
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-----eka~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-----EKALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-----HHHhhcceeEEEeecceeehhhhCcccCcch
Confidence 432222211111111111 124678999999876543221110 0112345588999999999865442
Q ss_pred -HHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 -QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 -k~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.+...-++++....++||||...+-+.|.-.++-.- ....|..-|.+|-..
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~nl~---------------------- 290 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRPNLK---------------------- 290 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCCCce----------------------
Confidence 333344567888889999999888777765554421 001222222222100
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
-+ |..++....
T Consensus 291 ------------ye--------------------v~qkp~n~d------------------------------------- 301 (695)
T KOG0353|consen 291 ------------YE--------------------VRQKPGNED------------------------------------- 301 (695)
T ss_pred ------------eE--------------------eeeCCCChH-------------------------------------
Confidence 00 000000000
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
.-+.-+..++..- =.|+..||||-++.-.+
T Consensus 302 -------------------------------------------------d~~edi~k~i~~~-f~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 302 -------------------------------------------------DCIEDIAKLIKGD-FAGQSGIIYCFSQKDCE 331 (695)
T ss_pred -------------------------------------------------HHHHHHHHHhccc-cCCCcceEEEeccccHH
Confidence 0001111222111 15778999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhh------
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ------ 857 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q------ 857 (1060)
.+...|+.+||....||..+.+.+|..+...|-.++.. ++++|-+.|+||+-+++..||+-..|-+...|.|
T Consensus 332 kva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq--vivatvafgmgidkpdvrfvihhsl~ksienyyqasaril 409 (695)
T KOG0353|consen 332 KVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ--VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARIL 409 (695)
T ss_pred HHHHHHHhcCccccccccccCccccccccccccccceE--EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999866 7788899999999999999999999999999999
Q ss_pred -------------------------------------hhhhhhhhCCcCcEEEEEEe
Q 001524 858 -------------------------------------SVDRAYRIGQKKDVVVYRLM 877 (1060)
Q Consensus 858 -------------------------------------AiGRa~RiGQ~k~V~VyrLv 877 (1060)
.-||++|.|++.+|..|+=+
T Consensus 410 lrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 410 LRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred HHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 56899999999999876643
No 93
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.70 E-value=3.3e-16 Score=190.34 Aligned_cols=123 Identities=22% Similarity=0.302 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+..|.+||..+.+ ..++|||++...-++.|...|.+.||.+..+||+.++.+|...|.+|+++... +|++|.+.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--LLvaTsvv 673 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--LLVATSVV 673 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce--EEEehhhh
Confidence 5688999999998876 56899999999999999999999999999999999999999999999999755 99999999
Q ss_pred ccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecC
Q 001524 832 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 832 g~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
+.||++.....||+||.+-....|.+|.||++|.|.+..+ |.|++.
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A--vtFi~p 719 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA--VTFITP 719 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCcccee--EEEeCh
Confidence 9999999999999999999999999999999999988844 444554
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.70 E-value=6.7e-16 Score=199.30 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=92.4
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~ 470 (1060)
....++|+|..++..++. |+..++..+||+|||..++.++..+.. ...++|||+| ..|+.|+...|.+++...
T Consensus 75 ~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred cCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 445689999999888777 889999999999999755544433322 2468999999 888999999999887532
Q ss_pred c-----EEEEcccccchhhH-HHHHhh-hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC
Q 001524 471 K-----IREYFGTCVKTRQY-ELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541 (1060)
Q Consensus 471 ~-----v~~~~g~~~~~~~~-~~~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 541 (1060)
. +..++|........ ...... +.++|+|+|++.+......+. . .+++||+||||++-.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~------------~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG------------P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc------------C-CCCEEEEeChHhhhh
Confidence 2 22355544332222 222222 348999999999876654321 1 589999999999954
No 95
>PRK14701 reverse gyrase; Provisional
Probab=99.70 E-value=1.3e-15 Score=200.12 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=86.3
Q ss_pred HHHHHHHhhccCCCceEEEeccHHH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEec----C
Q 001524 757 FILSLLDKLIPEGHNVLIFSQTRKM---LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS----Q 829 (1060)
Q Consensus 757 ~L~~lL~~~~~~g~KvLIFsq~~~~---ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST----~ 829 (1060)
.|.+++..+ |..+||||+.+.. ++.|...|...|+++..+||+ |.+.+++|.+|... +|++| .
T Consensus 321 ~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~--VLVaT~s~~g 390 (1638)
T PRK14701 321 HVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID--YLIGVATYYG 390 (1638)
T ss_pred HHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC--EEEEecCCCC
Confidence 455666553 5679999998764 589999999999999999994 89999999999854 66666 5
Q ss_pred CcccccCccc-CCEEEEeCCCC---Cchhhhhhh-------------hhhhhhCCcCcE
Q 001524 830 VGGLGLTLTK-ADRVIVVDPAW---NPSTDNQSV-------------DRAYRIGQKKDV 871 (1060)
Q Consensus 830 agg~GLNLt~-A~~VIi~D~~W---Np~~~~QAi-------------GRa~RiGQ~k~V 871 (1060)
++++|||++. ..+||+||.|- +...+.|.. ||++|.|..-++
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 7899999998 99999999998 776666665 999999875443
No 96
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=177.34 Aligned_cols=316 Identities=20% Similarity=0.214 Sum_probs=210.3
Q ss_pred cCCCChHHHHHHHH-HHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEEeC-cccHHHHHHHHHHhcC-
Q 001524 393 GNMLFPHQREGLRW-LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAP-KTLLSHWIKELTAVGL- 468 (1060)
Q Consensus 393 ~~~L~phQ~egV~w-l~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV~P-~sLl~qW~~E~~k~~~- 468 (1060)
...|.|-|.-+|.. |+. |.+-++...|++|||+++ =++.+.+. ...++.|+++| ..|..|-..+|..-+.
T Consensus 214 ~~eLlPVQ~laVe~GLLe----G~nllVVSaTasGKTLIg--ElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 214 IEELLPVQVLAVEAGLLE----GENLLVVSATASGKTLIG--ELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred cceecchhhhhhhhcccc----CCceEEEeccCCCcchHH--HhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 45689999998865 334 788899999999999752 33333332 33589999999 6677777778865432
Q ss_pred -CCcEEEEcccccchhhH--HHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--
Q 001524 469 -SAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-- 543 (1060)
Q Consensus 469 -~~~v~~~~g~~~~~~~~--~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-- 543 (1060)
+.++.+-.|........ .....-.+.+|++-||+-+--...... ....+..|||||.|.+....
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~-----------~lgdiGtVVIDEiHtL~deERG 356 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK-----------DLGDIGTVVIDEIHTLEDEERG 356 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC-----------cccccceEEeeeeeeccchhcc
Confidence 23343444543322111 001112357999999997744332211 23457899999999996522
Q ss_pred h---HHHHHHHcC-CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001524 544 T---QRAKSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 544 s---k~~kal~~l-~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
. .+...++.+ +....|.||||- .|+.|+...+..-
T Consensus 357 ~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~--------------------------------------- 395 (830)
T COG1202 357 PRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK--------------------------------------- 395 (830)
T ss_pred cchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe---------------------------------------
Confidence 1 233344444 456778899996 5666665444310
Q ss_pred HHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
-|..+. .--|...+.++|+-
T Consensus 396 -----------------lV~y~~------RPVplErHlvf~~~------------------------------------- 415 (830)
T COG1202 396 -----------------LVLYDE------RPVPLERHLVFARN------------------------------------- 415 (830)
T ss_pred -----------------eEeecC------CCCChhHeeeeecC-------------------------------------
Confidence 000000 00012223333321
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhcc----CC--CceE
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----EG--HNVL 773 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~----~g--~KvL 773 (1060)
.+.|+..+.++++.-.. .| .++|
T Consensus 416 ---------------------------------------------------e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 416 ---------------------------------------------------ESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred ---------------------------------------------------chHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 12344444444443221 22 3599
Q ss_pred EEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE----eCCC
Q 001524 774 IFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV----VDPA 849 (1060)
Q Consensus 774 IFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi----~D~~ 849 (1060)
||+.++.-...|+.+|..+|++...||++++..+|+.+-..|.++.-. .++||.|.|.|+++++ +.||+ +...
T Consensus 445 VFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~ 521 (830)
T COG1202 445 VFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--AVVTTAALAAGVDFPA-SQVIFESLAMGIE 521 (830)
T ss_pred EEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--eEeehhhhhcCCCCch-HHHHHHHHHcccc
Confidence 999999999999999999999999999999999999999999999866 8899999999999985 44554 5666
Q ss_pred C-CchhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 850 W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 850 W-Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
| +|..+.|..|||+|.|-.-.-.||-++-.|
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 7 999999999999999877666777777554
No 97
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.69 E-value=7.4e-17 Score=175.33 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=111.7
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
-+|+..|++.|.+ ..-+||||+.-..-.|.|.++|--.|+..+.|||+..+++|...|+.|+.|... +|++|.++
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLVATDVA 481 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLVATDVA 481 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEEEecch
Confidence 4577777777776 566799999999999999999999999999999999999999999999999865 89999999
Q ss_pred ccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHH
Q 001524 832 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886 (1060)
Q Consensus 832 g~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I 886 (1060)
+-||++++..+||+||-|-.-..|.+|+||++|-|.+.-... |+-+.+-|.-+
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT--fINK~~~esvL 534 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT--FINKNQEESVL 534 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee--eecccchHHHH
Confidence 999999999999999999999999999999999998875433 45555444443
No 98
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=1.2e-16 Score=165.79 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=110.9
Q ss_pred CCCChHHHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC
Q 001524 394 NMLFPHQREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS 469 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~ 469 (1060)
..|+|||.+++..++..+... +.+++..+||+|||++++.++..+.. ++||||| .+|+.||..+|..+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 358999999999998876654 88999999999999999988888765 9999999 68999999999877665
Q ss_pred CcEEEEccc-----------ccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCC-cccCcCCCCCCCccEEEEcCCC
Q 001524 470 AKIREYFGT-----------CVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSS-FISDEAGDDDAIWDYMILDEGH 537 (1060)
Q Consensus 470 ~~v~~~~g~-----------~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~-~~~~~~~~~~~~wd~VIlDEAH 537 (1060)
......... ................+++++|++.+........... ............+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 443322110 0001111122234567899999999987654321100 0000001123458999999999
Q ss_pred cCCCcchHHHHHHHcCCCCceEEeecCCC
Q 001524 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 538 ~iKN~~sk~~kal~~l~a~~RilLTGTPi 566 (1060)
++.+... ++.+..+...++++|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9854332 66666688899999999994
No 99
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=4.7e-16 Score=182.43 Aligned_cols=168 Identities=23% Similarity=0.185 Sum_probs=109.5
Q ss_pred cccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHH
Q 001524 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKE 462 (1060)
Q Consensus 384 ~~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E 462 (1060)
....+|.+-...|||||.+++....+.+..+.+|=|-+.+|+|||++++-++-.+.. .++|++|| .+|+.|-.+|
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~----~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA----ARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh----hheEeecchHHHHHHHHHH
Confidence 345567777889999999999999998888888889999999999999988877754 78999999 8888886655
Q ss_pred HHHh--cCCCcEEEEccccc----------------chhhHHHHH------hhhCCCEEEeeHHHHHhccccccCCCccc
Q 001524 463 LTAV--GLSAKIREYFGTCV----------------KTRQYELQY------VLQDKGVLLTTYDIVRNNSKSLRGSSFIS 518 (1060)
Q Consensus 463 ~~k~--~~~~~v~~~~g~~~----------------~~~~~~~~~------~~~~~~VvItTy~~l~~~~~~l~~~~~~~ 518 (1060)
...- .+-..+.++..... ..+...+.. ....--||++||+.+-.-.....
T Consensus 226 w~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe------ 299 (1518)
T COG4889 226 WTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE------ 299 (1518)
T ss_pred HhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH------
Confidence 4321 11111111111110 001111111 11223589999998754332211
Q ss_pred CcCCCCCCCccEEEEcCCCcCCCcc------hHH--HHHHHcCCCCceEEeecCC
Q 001524 519 DEAGDDDAIWDYMILDEGHLIKNPS------TQR--AKSLLEIPSAHRIIISGTP 565 (1060)
Q Consensus 519 ~~~~~~~~~wd~VIlDEAH~iKN~~------sk~--~kal~~l~a~~RilLTGTP 565 (1060)
..-..||+|||||||+-.+.. +.. ...-..+++.+|+-+||||
T Consensus 300 ----~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 300 ----AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ----cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 134569999999999974421 111 1222346778899999999
No 100
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=2.8e-16 Score=153.76 Aligned_cols=120 Identities=32% Similarity=0.541 Sum_probs=112.2
Q ss_pred chHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcc
Q 001524 753 CKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 832 (1060)
Q Consensus 753 ~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg 832 (1060)
.|...+..++.+...++.++|||+.+...++.+...|...++++..++|+++..+|..+++.|+.+. ..+|++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6899999999988778899999999999999999999988999999999999999999999999987 44888999999
Q ss_pred cccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 833 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 833 ~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
+|+|++.+++||+++++|++..+.|++||++|.||++.|++|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998887764
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=7.7e-15 Score=179.91 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.++.+.+.++...|+.|||||.+....+.|...|...|+++..++|.+...+|+.+.+.|+.|. ++|+|..+
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNmA 502 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNMA 502 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999985 89999999
Q ss_pred ccccCcc--------------------------------------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 832 GLGLTLT--------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 832 g~GLNLt--------------------------------------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
|+|+++. +-=+||.-..+-|...+.|..||++|.|.......
T Consensus 503 GRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f 582 (896)
T PRK13104 503 GRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRF 582 (896)
T ss_pred cCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9999974 23488999999999999999999999999887655
Q ss_pred E
Q 001524 874 Y 874 (1060)
Q Consensus 874 y 874 (1060)
|
T Consensus 583 ~ 583 (896)
T PRK13104 583 Y 583 (896)
T ss_pred E
Confidence 4
No 102
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=2.3e-15 Score=163.89 Aligned_cols=122 Identities=21% Similarity=0.305 Sum_probs=103.8
Q ss_pred chHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcc
Q 001524 753 CKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 832 (1060)
Q Consensus 753 ~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg 832 (1060)
.|+++|..|..-+ .- ...||||+.+.++..|...|...|+.+..+||.++..+|.+++++|+.|... +|++|.+++
T Consensus 316 ~K~~~l~~lyg~~-ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitTnV~A 391 (477)
T KOG0332|consen 316 DKYQALVNLYGLL-TI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITTNVCA 391 (477)
T ss_pred hHHHHHHHHHhhh-hh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce--EEEEechhh
Confidence 3666666643322 22 2579999999999999999999999999999999999999999999999866 999999999
Q ss_pred cccCcccCCEEEEeCCCC------CchhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 833 LGLTLTKADRVIVVDPAW------NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 833 ~GLNLt~A~~VIi~D~~W------Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
+|++....+.||+||.|- .+.+|.+|+||+||.|.+.-+ +.|+-.+
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a--~n~v~~~ 443 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA--INLVDDK 443 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE--EEeeccc
Confidence 999999999999999984 578999999999999976643 3455554
No 103
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=3e-15 Score=187.08 Aligned_cols=109 Identities=20% Similarity=0.280 Sum_probs=93.5
Q ss_pred CCceEEEeccHHHHHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001524 769 GHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 769 g~KvLIFsq~~~~ld~L~~~L~~---~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 845 (1060)
+.++|||+.....++.+...|.. .++.++.+||+++.++|.++++.|..+... +|++|.+++.||++.++++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk--VlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRK--VVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeE--EEEecchHhhcccccCceEEEE
Confidence 45799999999999999999987 479999999999999999999999988643 8899999999999999999999
Q ss_pred eCCC----CCchh--------------hhhhhhhhhhhCCcCcEEEEEEecCCCH
Q 001524 846 VDPA----WNPST--------------DNQSVDRAYRIGQKKDVVVYRLMTCGTV 882 (1060)
Q Consensus 846 ~D~~----WNp~~--------------~~QAiGRa~RiGQ~k~V~VyrLvt~gTi 882 (1060)
++.+ |||.. +.||.||++|. ++-.+|+|+++...
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQH 338 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHH
Confidence 8875 45544 67999998886 56778999986543
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.5e-14 Score=173.22 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=76.3
Q ss_pred HHHHHHHHhhc--CCeEEEEECCCCHHHH--HHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCC---Cc--
Q 001524 782 LNLIQESIGSK--GYKFLRIDGTTKASDR--VKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW---NP-- 852 (1060)
Q Consensus 782 ld~L~~~L~~~--gi~~~ridG~~s~~eR--~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W---Np-- 852 (1060)
.+.+++.|... +.++.++|+.++..++ .++++.|.+++.. +|++|+..+.|+|+..++.|+++|.+- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD--ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC--EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 57777777776 7899999999887665 8999999998755 889999999999999999998776652 23
Q ss_pred -------hhhhhhhhhhhhhCCcCcEEEEEE
Q 001524 853 -------STDNQSVDRAYRIGQKKDVVVYRL 876 (1060)
Q Consensus 853 -------~~~~QAiGRa~RiGQ~k~V~VyrL 876 (1060)
+.+.|+.||++|.+....|.|..+
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 578999999999888777765433
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=9.5e-15 Score=178.37 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.+|.+.+......|..|||||.++...+.|...|...|+++..++|.+...++.-+...++.+. ++|+|..+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnmA 498 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEeccc
Confidence 45899999999988889999999999999999999999999999999999988666666666666654 89999999
Q ss_pred ccccCcc---cCC-----EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 832 GLGLTLT---KAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 832 g~GLNLt---~A~-----~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
|+|+++. .+. +||.++.|-|...+.|++||++|.|.......
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 9999994 677 99999999999999999999999999887644
No 106
>PRK09694 helicase Cas3; Provisional
Probab=99.65 E-value=2.7e-14 Score=178.65 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred HHhhccCCCceEEEeccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHH----HHHHHHh-hcCCC-ccEEEEecCCcc
Q 001524 762 LDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDR----VKIVNDF-QEGDV-APIFLLTSQVGG 832 (1060)
Q Consensus 762 L~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~g---i~~~ridG~~s~~eR----~~iI~~F-~~~~~-~~V~LlST~agg 832 (1060)
+.+....|.++|||++.+..+..+...|...+ +++..+||.++..+| +++++.| +++.. ...+|++|++..
T Consensus 553 i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 553 MIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 33334578899999999999999999998764 689999999999999 4678889 44432 136899999999
Q ss_pred cccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCc
Q 001524 833 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 868 (1060)
Q Consensus 833 ~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~ 868 (1060)
.|||+ .++.+|....| ...+.||+||++|-|..
T Consensus 633 ~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 633 QSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred heeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999 57888876555 56899999999999874
No 107
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.64 E-value=1.2e-14 Score=182.03 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=93.4
Q ss_pred CCCceEEEeccHHHHHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~---~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
.+..+|||+.....++.+...|.. .++.++.+||+++..+|.+++..|.+|.. -+|++|.+++.||++.++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r--kVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR--KVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe--EEEEecchHHhcccccCceEEE
Confidence 356899999999999999999986 57899999999999999999999988753 4899999999999999999999
Q ss_pred EeCCCC----Cc--------------hhhhhhhhhhhhhCCcCcEEEEEEecCCCH
Q 001524 845 VVDPAW----NP--------------STDNQSVDRAYRIGQKKDVVVYRLMTCGTV 882 (1060)
Q Consensus 845 i~D~~W----Np--------------~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTi 882 (1060)
.++.+- +| +.+.||.||++|. ++-.+|||+++...
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 966542 22 3578888888886 47789999987654
No 108
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.63 E-value=4.8e-15 Score=164.30 Aligned_cols=311 Identities=16% Similarity=0.167 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccC------CCceEEEeC-cccHHHHHHHHHHh---
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL------IKRALVVAP-KTLLSHWIKELTAV--- 466 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~------~k~vLIV~P-~sLl~qW~~E~~k~--- 466 (1060)
-.|..+|..+++ |+..+.-.-||+|||.. +|-++..++.... .-..+|++| +-|..|-.+.+.+.
T Consensus 44 lIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 44 LIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 358888888877 88777778999999987 4445555554322 236799999 78888888887764
Q ss_pred cC-CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--
Q 001524 467 GL-SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-- 543 (1060)
Q Consensus 467 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-- 543 (1060)
++ ..++...... ..............+||++|+..+........- .......++|+|||..+...+
T Consensus 120 c~k~lr~~nl~s~--~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~---------~~~~~l~~LVvDEADLllsfGYe 188 (569)
T KOG0346|consen 120 CSKDLRAINLASS--MSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL---------EYLDSLSFLVVDEADLLLSFGYE 188 (569)
T ss_pred HHHhhhhhhhhcc--cchHHHHHHHccCCCeEEeChHHHHHHHhhccc---------hhhhheeeEEechhhhhhhcccH
Confidence 33 2222222211 111111123345689999999988766543211 112346789999999985432
Q ss_pred hHHHHHHHcCCCCc-eEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001524 544 TQRAKSLLEIPSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622 (1060)
Q Consensus 544 sk~~kal~~l~a~~-RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 622 (1060)
-..-+....++..+ .+++|||-- .|+..|-.+++.
T Consensus 189 edlk~l~~~LPr~~Q~~LmSATl~----dDv~~LKkL~l~---------------------------------------- 224 (569)
T KOG0346|consen 189 EDLKKLRSHLPRIYQCFLMSATLS----DDVQALKKLFLH---------------------------------------- 224 (569)
T ss_pred HHHHHHHHhCCchhhheeehhhhh----hHHHHHHHHhcc----------------------------------------
Confidence 22333334454332 477888852 122222221111
Q ss_pred HHHhhHHHHHhhhhcccccCccccccccC---ccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001524 623 RERIQPYFLRRLKNEVFHEDDVTSSATLS---KKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 699 (1060)
Q Consensus 623 ~~~l~p~~LRR~k~dv~~~~~~~~~~~LP---~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 699 (1060)
.|++|.-+.. .+| ....+.|.|. +
T Consensus 225 ----nPviLkl~e~------------el~~~dqL~Qy~v~cs--e----------------------------------- 251 (569)
T KOG0346|consen 225 ----NPVILKLTEG------------ELPNPDQLTQYQVKCS--E----------------------------------- 251 (569)
T ss_pred ----CCeEEEeccc------------cCCCcccceEEEEEec--c-----------------------------------
Confidence 1221111111 111 1112222222 1
Q ss_pred ChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccH
Q 001524 700 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 779 (1060)
Q Consensus 700 hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~ 779 (1060)
.-|+..|..+|+--.-. .|.|||.+..
T Consensus 252 ----------------------------------------------------~DKflllyallKL~LI~-gKsliFVNtI 278 (569)
T KOG0346|consen 252 ----------------------------------------------------EDKFLLLYALLKLRLIR-GKSLIFVNTI 278 (569)
T ss_pred ----------------------------------------------------chhHHHHHHHHHHHHhc-CceEEEEech
Confidence 11333344443322112 3799999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecC------------------------------
Q 001524 780 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ------------------------------ 829 (1060)
Q Consensus 780 ~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~------------------------------ 829 (1060)
+..-.|.-+|+.-|++.|.+.|.++..-|.-+|++||.|-.. +||+|.
T Consensus 279 dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK 356 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKK 356 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee--EEEEccCccchhhhhccccccccccCCCCccccccc
Confidence 999999999999999999999999999999999999999744 566655
Q ss_pred -----CcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEE
Q 001524 830 -----VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875 (1060)
Q Consensus 830 -----agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vyr 875 (1060)
..++||++..++.||+||.|-++..|++|+||+.|-|.+..+.-|-
T Consensus 357 ~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 357 LDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred cCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 1247999999999999999999999999999999999888765543
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=5.8e-14 Score=174.06 Aligned_cols=311 Identities=16% Similarity=0.173 Sum_probs=203.6
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCC--CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHH-HHHHHHHHhcC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS-HWIKELTAVGL 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~--GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~-qW~~E~~k~~~ 468 (1060)
....-.|-|..+|.-..+=.+.++ .=+||-++|.|||-.|+=.+. ......+-+.|+||.+++. |..+.|+.-+.
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAF--kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAF--KAVMDGKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHH--HHhcCCCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 445567889999998887555543 559999999999987664332 2223348899999988775 45566665444
Q ss_pred CCcEEEEccc---ccchhhHHHHH-hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch
Q 001524 469 SAKIREYFGT---CVKTRQYELQY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544 (1060)
Q Consensus 469 ~~~v~~~~g~---~~~~~~~~~~~-~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 544 (1060)
+..|.+-.-+ +.+.....+.. ..+.-||||-|+..+.++.... ...+|||||=|++.=.
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk---------------dLGLlIIDEEqRFGVk-- 731 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK---------------DLGLLIIDEEQRFGVK-- 731 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe---------------cCCeEEEechhhcCcc--
Confidence 4444332211 11111212222 2345789999999998766532 2589999999998433
Q ss_pred HHHHHHHcCCC-CceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 QRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 k~~kal~~l~a-~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
.-..++.+++ -+.+-||||||...+.=
T Consensus 732 -~KEkLK~Lr~~VDvLTLSATPIPRTL~M--------------------------------------------------- 759 (1139)
T COG1197 732 -HKEKLKELRANVDVLTLSATPIPRTLNM--------------------------------------------------- 759 (1139)
T ss_pred -HHHHHHHHhccCcEEEeeCCCCcchHHH---------------------------------------------------
Confidence 3334555544 46777999999654320
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
.+.. +|- - .+ ..-||.....|.....+..-
T Consensus 760 -sm~G--iRd-l-Sv---------I~TPP~~R~pV~T~V~~~d~------------------------------------ 789 (1139)
T COG1197 760 -SLSG--IRD-L-SV---------IATPPEDRLPVKTFVSEYDD------------------------------------ 789 (1139)
T ss_pred -HHhc--chh-h-hh---------ccCCCCCCcceEEEEecCCh------------------------------------
Confidence 0000 000 0 01 12333333323222111100
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
..+.+-|..-+.+|.+|-.-.+..+.+.
T Consensus 790 ----------------------------------------------------~~ireAI~REl~RgGQvfYv~NrV~~Ie 817 (1139)
T COG1197 790 ----------------------------------------------------LLIREAILRELLRGGQVFYVHNRVESIE 817 (1139)
T ss_pred ----------------------------------------------------HHHHHHHHHHHhcCCEEEEEecchhhHH
Confidence 1112222222335667777778888899
Q ss_pred HHHHHHhhc--CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC-CCchhhhhhhh
Q 001524 784 LIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDNQSVD 860 (1060)
Q Consensus 784 ~L~~~L~~~--gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~QAiG 860 (1060)
.+...|... ..++++.||.|+..+-++++..|.++... +|+||.....|||++.||++|+-+.+ +--+...|-.|
T Consensus 818 ~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRG 895 (1139)
T COG1197 818 KKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRG 895 (1139)
T ss_pred HHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC--EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhcc
Confidence 999999876 67899999999999999999999999855 88888999999999999999998877 48899999999
Q ss_pred hhhhhCCcCcEEEEEEecC
Q 001524 861 RAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 861 Ra~RiGQ~k~V~VyrLvt~ 879 (1060)
|+||-.++ .+.|.|+..
T Consensus 896 RVGRS~~~--AYAYfl~p~ 912 (1139)
T COG1197 896 RVGRSNKQ--AYAYFLYPP 912 (1139)
T ss_pred ccCCccce--EEEEEeecC
Confidence 99996543 456666654
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.7e-13 Score=148.29 Aligned_cols=303 Identities=19% Similarity=0.245 Sum_probs=206.0
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~ 470 (1060)
...+|-|+|..+.+.++....+....|+..-+|.|||-++...+...+..+ +++.|..| .-++-.-...++.-+++.
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccchHHHHHHHHHhhccC
Confidence 356799999999999999888889999999999999998888777766554 78999999 667777777888878888
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc-chHHHHH
Q 001524 471 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQRAKS 549 (1060)
Q Consensus 471 ~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~sk~~ka 549 (1060)
.+...+|.+.... ...=||-||++.++=. ..||++|+||...+--. +-.+..|
T Consensus 172 ~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk------------------~aFD~liIDEVDAFP~~~d~~L~~A 225 (441)
T COG4098 172 DIDLLYGDSDSYF--------RAPLVVATTHQLLRFK------------------QAFDLLIIDEVDAFPFSDDQSLQYA 225 (441)
T ss_pred CeeeEecCCchhc--------cccEEEEehHHHHHHH------------------hhccEEEEeccccccccCCHHHHHH
Confidence 8888888764322 1223556666666521 23899999999998322 2234445
Q ss_pred HHcC--CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhh
Q 001524 550 LLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627 (1060)
Q Consensus 550 l~~l--~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 627 (1060)
+..- ....+|.|||||-..-..+ +..+. +.
T Consensus 226 v~~ark~~g~~IylTATp~k~l~r~--------------------------~~~g~----------------------~~ 257 (441)
T COG4098 226 VKKARKKEGATIYLTATPTKKLERK--------------------------ILKGN----------------------LR 257 (441)
T ss_pred HHHhhcccCceEEEecCChHHHHHH--------------------------hhhCC----------------------ee
Confidence 5443 3456799999994110000 00000 00
Q ss_pred HH-HHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001524 628 PY-FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 706 (1060)
Q Consensus 628 p~-~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~ 706 (1060)
+. +=+|.... +||- ...+|+.. .-+.+
T Consensus 258 ~~klp~RfH~~-----------pLpv--Pkf~w~~~--~~k~l------------------------------------- 285 (441)
T COG4098 258 ILKLPARFHGK-----------PLPV--PKFVWIGN--WNKKL------------------------------------- 285 (441)
T ss_pred EeecchhhcCC-----------CCCC--CceEEecc--HHHHh-------------------------------------
Confidence 00 01111110 1211 11233321 00000
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchH-HHHHHHHHhhccCCCceEEEeccHHHHHHH
Q 001524 707 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKI-SFILSLLDKLIPEGHNVLIFSQTRKMLNLI 785 (1060)
Q Consensus 707 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl-~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L 785 (1060)
.-.|+ .+|..+|++.+..|..++||.....+++..
T Consensus 286 --------------------------------------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~ 321 (441)
T COG4098 286 --------------------------------------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQV 321 (441)
T ss_pred --------------------------------------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHH
Confidence 01122 256778888888999999999999999999
Q ss_pred HHHHhhc-C-CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCC--CCchhhhhhhhh
Q 001524 786 QESIGSK-G-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA--WNPSTDNQSVDR 861 (1060)
Q Consensus 786 ~~~L~~~-g-i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~--WNp~~~~QAiGR 861 (1060)
...|+.. + .....++... ..|.+.|..|++|... +|++|....+|++++..+..++=.-. ++-+..+|.-||
T Consensus 322 a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~--lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGR 397 (441)
T COG4098 322 AAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT--LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGR 397 (441)
T ss_pred HHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE--EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhh
Confidence 9999543 2 3345555544 3799999999999855 99999999999999999999884444 899999999999
Q ss_pred hhhhCCcCc
Q 001524 862 AYRIGQKKD 870 (1060)
Q Consensus 862 a~RiGQ~k~ 870 (1060)
+||--..-.
T Consensus 398 vGRs~~~Pt 406 (441)
T COG4098 398 VGRSLERPT 406 (441)
T ss_pred ccCCCcCCC
Confidence 999554333
No 111
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2.3e-13 Score=166.51 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=109.5
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
...|+.++++-+.++.+.|++|||||.+....+.|...|...|+++..+++..+..+|..+...|+.|. ++|+|..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnm 506 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCC
Confidence 356999999999999999999999999999999999999999999999999999999999999999986 8999999
Q ss_pred cccccCcc-------------------------------------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 831 GGLGLTLT-------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 831 gg~GLNLt-------------------------------------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
+|+|+|+. +-=+||.-..+-|...+.|..||++|.|.......
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999974 33489999999999999999999999999877554
Q ss_pred E
Q 001524 874 Y 874 (1060)
Q Consensus 874 y 874 (1060)
|
T Consensus 587 ~ 587 (908)
T PRK13107 587 Y 587 (908)
T ss_pred E
Confidence 4
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=6.9e-14 Score=171.56 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=107.7
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.++.+.+.++...|++|||||.++...+.|...|...|+++..++|. +.+|++.|..|..++.. ++|+|..+
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATNmA 488 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATNMA 488 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEecccc
Confidence 469999999999988899999999999999999999999999999999995 77999999999988766 99999999
Q ss_pred ccccCccc--------------------------------------CCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 832 GLGLTLTK--------------------------------------ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 832 g~GLNLt~--------------------------------------A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
|+|+|+.= -=+||.-..+-|...+.|..||++|.|.......
T Consensus 489 GRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f 568 (830)
T PRK12904 489 GRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 568 (830)
T ss_pred cCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeE
Confidence 99999643 4488999999999999999999999999887765
Q ss_pred E
Q 001524 874 Y 874 (1060)
Q Consensus 874 y 874 (1060)
|
T Consensus 569 ~ 569 (830)
T PRK12904 569 Y 569 (830)
T ss_pred E
Confidence 4
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.58 E-value=2.5e-14 Score=148.86 Aligned_cols=159 Identities=26% Similarity=0.291 Sum_probs=114.7
Q ss_pred cCCCChHHHHHHHHHHHhhcCC-CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCC
Q 001524 393 GNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~-~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~ 470 (1060)
...++|||.+++.++.. . +++++..+||+|||..++.++.........+++||++| ..++.||..++.++.+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 34589999999998876 4 79999999999999987777777766655689999999 888899999999887653
Q ss_pred c---EEEEcccccchhhHHHHHhhhCC-CEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC-cchH
Q 001524 471 K---IREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN-PSTQ 545 (1060)
Q Consensus 471 ~---v~~~~g~~~~~~~~~~~~~~~~~-~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN-~~sk 545 (1060)
. ...+.+... ......+.... +|+++||+.+........ .....|++||+||+|.+.+ ....
T Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~----------~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 82 GLKVVGLYGGDSK---REQLRKLESGKTDILVTTPGRLLDLLENDL----------LELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred CeEEEEEeCCcch---HHHHHHHhcCCCCEEEeChHHHHHHHHcCC----------cCHhHCCEEEEECHHHHhcCCcHH
Confidence 3 223333221 11222233344 999999999987665432 1345588999999999986 4444
Q ss_pred HHH-HHHcC-CCCceEEeecCCCCC
Q 001524 546 RAK-SLLEI-PSAHRIIISGTPIQN 568 (1060)
Q Consensus 546 ~~k-al~~l-~a~~RilLTGTPiqN 568 (1060)
... .+..+ +..+++++||||..+
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchh
Confidence 433 33444 577889999999744
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=1.1e-14 Score=130.32 Aligned_cols=78 Identities=33% Similarity=0.615 Sum_probs=74.2
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhC
Q 001524 787 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 787 ~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiG 866 (1060)
+.|+..|+++..++|+++..+|+.+++.|+.+... +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46888999999999999999999999999998864 8889999999999999999999999999999999999999987
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.53 E-value=5.9e-14 Score=137.48 Aligned_cols=139 Identities=21% Similarity=0.193 Sum_probs=99.6
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc-cHHHHHHHHHHhcC-CCcEEEEcccccchhhHHHHHhhh
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVGL-SAKIREYFGTCVKTRQYELQYVLQ 492 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s-Ll~qW~~E~~k~~~-~~~v~~~~g~~~~~~~~~~~~~~~ 492 (1060)
+++++.+++|+|||.+++.++..+......+++||+||.. +..+|...+..+.. ...+..+.+....... ......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQ--EKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHH--HHHhcC
Confidence 4689999999999999999998887766678999999954 55666777777765 3444444443322221 122346
Q ss_pred CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHH---HHHHcCCCCceEEeecCC
Q 001524 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA---KSLLEIPSAHRIIISGTP 565 (1060)
Q Consensus 493 ~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~---kal~~l~a~~RilLTGTP 565 (1060)
..+|+++||+.+........ .....|++||+||+|.+.+...... .........+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~----------~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK----------LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC----------cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78999999998876554321 1234689999999999988765543 344456778889999998
No 116
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=7.3e-14 Score=153.92 Aligned_cols=119 Identities=19% Similarity=0.352 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCccc
Q 001524 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 833 (1060)
Q Consensus 754 Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~ 833 (1060)
|+..|..+.. +-...+||++.+.-++.|...|..+++.+..++|.|.+.+|..+...|+.|... +|++|...+.
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce--EEeecccccc
Confidence 6666666666 234589999999999999999999999999999999999999999999999866 8999999999
Q ss_pred ccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 834 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 834 GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
|++++.++.||+||.|-|+..|.+|+||++|.|.+.- +..++++.
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~~~ 370 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVTEE 370 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeehHh
Confidence 9999999999999999999999999999999997653 33445544
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.51 E-value=9.8e-12 Score=152.77 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=110.6
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
..+++..|++.|..+...|.++||||..+..++.|...|...|+++..+||.++..+|.+++..|+.|... +|++|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~--VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD--VLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce--EEEEcCh
Confidence 45678889999999989999999999999999999999999999999999999999999999999998743 7889999
Q ss_pred cccccCcccCCEEEEeC-----CCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCC
Q 001524 831 GGLGLTLTKADRVIVVD-----PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 881 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D-----~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gT 881 (1060)
.++|++++.++.||++| .+-+...+.|++||++|.. . ..++.++...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCC
Confidence 99999999999999999 5668899999999999973 2 23445555444
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=8.6e-12 Score=153.49 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=106.0
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.+|.+.+..+...|.+|||||.++...+.|...|...|+++..+++ .+.+|++.|-.|..+... ++|+|..+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIATNMA 656 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEeccCc
Confidence 45999999999998889999999999999999999999999999999997 577999999999988766 99999999
Q ss_pred ccccCccc---CC-----EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 832 GLGLTLTK---AD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 832 g~GLNLt~---A~-----~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
|+|+++.- +. +||.++.+-+...+.|++||++|.|.......
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF 706 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE
Confidence 99999983 32 44889999999999999999999999877543
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=1.4e-12 Score=157.81 Aligned_cols=304 Identities=18% Similarity=0.193 Sum_probs=183.8
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhc--------cCCCceEEEeC-cccHHHHHHHHHHhcC--CCcEEEEcccc
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHS--------RLIKRALVVAP-KTLLSHWIKELTAVGL--SAKIREYFGTC 479 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~--------~~~k~vLIV~P-~sLl~qW~~E~~k~~~--~~~v~~~~g~~ 479 (1060)
|..+.++|++.|||.|||..|...|...... +..-+++.|+| ++|...-.+-+.+-.. +..+..+.|..
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ 202 (1230)
T KOG0952|consen 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDT 202 (1230)
T ss_pred hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcc
Confidence 5678899999999999998866555444442 22348999999 7776554444433222 45677777765
Q ss_pred cchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH-----HHHHHHcC-
Q 001524 480 VKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ-----RAKSLLEI- 553 (1060)
Q Consensus 480 ~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk-----~~kal~~l- 553 (1060)
...+.. ....+|+|||++.+---.....+... --....+|||||.|.+...... +++.++..
T Consensus 203 ql~~te-----i~~tqiiVTTPEKwDvvTRk~~~d~~-------l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 203 QLTKTE-----IADTQIIVTTPEKWDVVTRKSVGDSA-------LFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred hhhHHH-----HHhcCEEEecccceeeeeeeeccchh-------hhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 443332 35789999999876322111111110 1123679999999999775543 34444332
Q ss_pred ---CCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhhHHH
Q 001524 554 ---PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630 (1060)
Q Consensus 554 ---~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 630 (1060)
..-+.++||||- -|+.|+.. ||+..+......|...|. |..
T Consensus 271 ssqs~IRivgLSATl--PN~eDvA~---fL~vn~~~glfsFd~~yR-------------------------------Pvp 314 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATL--PNYEDVAR---FLRVNPYAGLFSFDQRYR-------------------------------PVP 314 (1230)
T ss_pred hhhhheEEEEeeccC--CCHHHHHH---HhcCCCccceeeeccccc-------------------------------ccc
Confidence 334557899995 25566544 444433333333433331 100
Q ss_pred HHhhhhcccccCccccccccCccceEEEEecCC--HHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhh
Q 001524 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT--SCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA 708 (1060)
Q Consensus 631 LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls--~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~ 708 (1060)
|+ ...+-++-. ..|.+..
T Consensus 315 L~----------------------~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 315 LT----------------------QGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ee----------------------eeEEeeecccchhhhhhH--------------------------------------
Confidence 00 001111100 0000000
Q ss_pred hhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHH
Q 001524 709 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788 (1060)
Q Consensus 709 ~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~ 788 (1060)
...+... +.+...+|+.|+||++.+...-..++.
T Consensus 335 ------------------------------------------d~~~~~k----v~e~~~~g~qVlvFvhsR~~Ti~tA~~ 368 (1230)
T KOG0952|consen 335 ------------------------------------------DEVCYDK----VVEFLQEGHQVLVFVHSRNETIRTAKK 368 (1230)
T ss_pred ------------------------------------------HHHHHHH----HHHHHHcCCeEEEEEecChHHHHHHHH
Confidence 0111222 233345799999999988766666555
Q ss_pred Hhhc----CC-------------------eEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001524 789 IGSK----GY-------------------KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 789 L~~~----gi-------------------~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 845 (1060)
|... |. .+..-|.++...+|+-.-+.|..|... +|++|...+-|+||++--.+|-
T Consensus 369 l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~--vL~cTaTLAwGVNLPA~aViIK 446 (1230)
T KOG0952|consen 369 LRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK--VLCCTATLAWGVNLPAYAVIIK 446 (1230)
T ss_pred HHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce--EEEecceeeeccCCcceEEEec
Confidence 5432 21 245567788889999999999999866 8999999999999998777776
Q ss_pred eCCCCCchh----------hhhhhhhhhhhCCcCc
Q 001524 846 VDPAWNPST----------DNQSVDRAYRIGQKKD 870 (1060)
Q Consensus 846 ~D~~WNp~~----------~~QAiGRa~RiGQ~k~ 870 (1060)
=-+.|++.. ..|.+|||||-.=...
T Consensus 447 GT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 447 GTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred CCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 666676654 7899999999764443
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.50 E-value=1.3e-12 Score=167.44 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=89.8
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~g---i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
....+|||......++.+...|...+ +.+..++|+++.++|++++..+ . .+-+|++|.+++.||++.++.+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-GRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-CceEEEeccHHHhccccCCeeEEE
Confidence 34589999999999999999998764 4588899999999999885543 2 245889999999999999999999
Q ss_pred EeCCC-----------------C-CchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHH
Q 001524 845 VVDPA-----------------W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEE 884 (1060)
Q Consensus 845 i~D~~-----------------W-Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE 884 (1060)
.++.. | +.+.+.||.||+||.| +-.+|+|+++...+.
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 87732 1 4468899999999987 667899998765543
No 121
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=3.2e-13 Score=149.45 Aligned_cols=321 Identities=20% Similarity=0.242 Sum_probs=212.1
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhcc-CCCceEEEeC-cccHHHHHHHHHHhcC
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSR-LIKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~~-~~k~vLIV~P-~sLl~qW~~E~~k~~~ 468 (1060)
......|.|+..+.-++. ++...-..-+|+|||..-+. .+..+.... ..-++||+.| .-|..|-.+-++.++.
T Consensus 40 g~~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgr 115 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGR 115 (529)
T ss_pred hcCCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcc
Confidence 344567889988877776 55555555899999975332 333333322 2348999999 6677776555555443
Q ss_pred CCcEE--EEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCC--cch
Q 001524 469 SAKIR--EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PST 544 (1060)
Q Consensus 469 ~~~v~--~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~s 544 (1060)
..... ..+|......+ ...+..+.+||+.|+..+....... .+......|||+|||.+|-. ..-
T Consensus 116 gt~lr~s~~~ggD~~eeq--f~~l~~npDii~ATpgr~~h~~vem----------~l~l~sveyVVfdEadrlfemgfqe 183 (529)
T KOG0337|consen 116 GTKLRQSLLVGGDSIEEQ--FILLNENPDIIIATPGRLLHLGVEM----------TLTLSSVEYVVFDEADRLFEMGFQE 183 (529)
T ss_pred ccchhhhhhcccchHHHH--HHHhccCCCEEEecCceeeeeehhe----------eccccceeeeeehhhhHHHhhhhHH
Confidence 33222 22232222222 2334457899999998775332211 12334478999999999954 456
Q ss_pred HHHHHHHcCCCC-ceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001524 545 QRAKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 545 k~~kal~~l~a~-~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
+..+.+.+++.. ..+++|||-- +. |+.|...+..
T Consensus 184 ql~e~l~rl~~~~QTllfSatlp-~~------lv~fakaGl~-------------------------------------- 218 (529)
T KOG0337|consen 184 QLHEILSRLPESRQTLLFSATLP-RD------LVDFAKAGLV-------------------------------------- 218 (529)
T ss_pred HHHHHHHhCCCcceEEEEeccCc-hh------hHHHHHccCC--------------------------------------
Confidence 778888888654 5688999952 11 1122111100
Q ss_pred HHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L 703 (1060)
.|..+ |+ +| ..+.++.-+ ++..
T Consensus 219 ---~p~lV-Rl--dv--------------------etkise~lk--------------------------~~f~------ 240 (529)
T KOG0337|consen 219 ---PPVLV-RL--DV--------------------ETKISELLK--------------------------VRFF------ 240 (529)
T ss_pred ---CCceE-Ee--eh--------------------hhhcchhhh--------------------------hhee------
Confidence 01001 10 00 000110000 0000
Q ss_pred hhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHH
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
......|..+|+.++..... .++++||+.....++
T Consensus 241 --------------------------------------------~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve 275 (529)
T KOG0337|consen 241 --------------------------------------------RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVE 275 (529)
T ss_pred --------------------------------------------eeccHHHHHHHHHHHhcccc-ccceeEEecccchHH
Confidence 00123467778888777654 457999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.+...|...|+.+..+.|++.+..|..-+.+|+.+... +|+.|+++.+|++++.-+.||.||.|-.+..+.+|+||+.
T Consensus 276 ~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~--~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~a 353 (529)
T KOG0337|consen 276 YVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS--ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVA 353 (529)
T ss_pred HHHHHHHhcCCCccccccccChHhhhhccccccCCccc--eEEEehhhhccCCCccccccccccCCCCCceEEEEecchh
Confidence 99999999999999999999999999999999998765 8999999999999999999999999999999999999999
Q ss_pred hhCCcCcEEEEEEecCC
Q 001524 864 RIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 864 RiGQ~k~V~VyrLvt~g 880 (1060)
|.|.+- ..|-||+..
T Consensus 354 ragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 354 RAGRTG--RAYSLVAST 368 (529)
T ss_pred hccccc--eEEEEEecc
Confidence 999764 456666654
No 122
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.49 E-value=3.3e-12 Score=163.12 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=89.0
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcCCe---EEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKGYK---FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~gi~---~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
....+|||+.....++.+...|...+++ +..++|++++++|.++++.+ + .+-+|++|.+++.||++.++++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g--~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S--GRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C--CeeEEEeccHHhhccccCcceEEE
Confidence 4567999999999999999999988765 67899999999999987753 2 345889999999999999999999
Q ss_pred EeC---------------CCCCc---hhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 845 VVD---------------PAWNP---STDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 845 i~D---------------~~WNp---~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
.++ .+..| +.+.||.||+||. ++-.+|+|+++...+
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 975 23233 6788999999887 466788999876443
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.44 E-value=4.2e-11 Score=136.59 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=108.2
Q ss_pred HHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCccccc
Q 001524 756 SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGL 835 (1060)
Q Consensus 756 ~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GL 835 (1060)
.-|+.-+....+.++|+||-+-..+|++-|..+|...|+++.++|.....-+|.++|.+.+.|.-. +|+.....-+||
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D--vLVGINLLREGL 510 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINLLREGL 510 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc--EEEeehhhhccC
Confidence 334445555566889999999999999999999999999999999999999999999999999744 888899999999
Q ss_pred CcccCCEEEEeCCC-----CCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHH
Q 001524 836 TLTKADRVIVVDPA-----WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 890 (1060)
Q Consensus 836 NLt~A~~VIi~D~~-----WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq 890 (1060)
+++.++.|.|+|.+ .+-...+|-+|||.|--. ..|..|-=...+++.+.|-+..
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~ 569 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETE 569 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHH
Confidence 99999999999987 478899999999999432 2355554444455555555433
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.43 E-value=7.4e-12 Score=156.85 Aligned_cols=133 Identities=22% Similarity=0.231 Sum_probs=104.1
Q ss_pred HHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhc--CCCccEEEEecCCcccccCcc
Q 001524 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLT 838 (1060)
Q Consensus 761 lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~--~~~~~V~LlST~agg~GLNLt 838 (1060)
.+..-...|.+++|-++.+..+..+...|+..+.+++.+|+.++...|.+.++.... ..+...++|+|++...|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 334445678999999999999999999999988789999999999999998886553 122345899999999999998
Q ss_pred cCCEEEEeCCCCCchhhhhhhhhhhhhC--CcCcEEEEEEecCCCHHHHHHHHHHHHHHH
Q 001524 839 KADRVIVVDPAWNPSTDNQSVDRAYRIG--QKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 896 (1060)
Q Consensus 839 ~A~~VIi~D~~WNp~~~~QAiGRa~RiG--Q~k~V~VyrLvt~gTiEE~I~~rq~~K~~l 896 (1060)
.+.+|- |+. -.....||.||++|-| ....++||...-.+....+.++....+...
T Consensus 512 -fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 512 -FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred -cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcc
Confidence 666553 332 2357899999999999 556688888877788888887766655433
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.41 E-value=2.4e-12 Score=136.64 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH-HHHHHhhc--cCCCceEEEeC-cccHHHHHHHHHHhcCC-
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHS--RLIKRALVVAP-KTLLSHWIKELTAVGLS- 469 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia-li~~l~~~--~~~k~vLIV~P-~sLl~qW~~E~~k~~~~- 469 (1060)
.+++||.+++..+.. +++.+++.++|.|||+..+. ++..+... ....++|||+| ..++.||...+..+...
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 489999999988877 88999999999999988544 44444433 34568999999 88899999999888653
Q ss_pred -CcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc-hHHH
Q 001524 470 -AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQRA 547 (1060)
Q Consensus 470 -~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-sk~~ 547 (1060)
..+..+.|....... ........+|+|+|++.+........ .....++++|+||+|.+.+.. ....
T Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~----------~~~~~l~~lIvDE~h~~~~~~~~~~~ 164 (203)
T cd00268 97 NLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGK----------LDLSKVKYLVLDEADRMLDMGFEDQI 164 (203)
T ss_pred CceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------CChhhCCEEEEeChHHhhccChHHHH
Confidence 344445554332222 22223478999999998766443221 122347899999999986543 2222
Q ss_pred H-HHHcCC-CCceEEeecCCC
Q 001524 548 K-SLLEIP-SAHRIIISGTPI 566 (1060)
Q Consensus 548 k-al~~l~-a~~RilLTGTPi 566 (1060)
. .+..+. ....+++||||-
T Consensus 165 ~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 165 REILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHhCCcccEEEEEeccCC
Confidence 2 333444 455788999996
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.1e-10 Score=143.64 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-HHHHHhhcCCCccEEEEecCC
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-KIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~-~iI~~F~~~~~~~V~LlST~a 830 (1060)
..|+.++++-+.+....|+.|||-|.+....+.|...|...|+++..++.... +++ ++|.+ .|. ...+-|+|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~--AG~-~g~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG--AGK-LGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh--cCC-CCcEEEeecc
Confidence 56899999999999999999999999999999999999999999999988643 333 44433 333 2237888999
Q ss_pred cccccCcc--------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 831 GGLGLTLT--------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 831 gg~GLNLt--------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
+|+|.++. +-=+||.-..+-|...+.|..||++|.|.......|
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99998873 345899999999999999999999999998876544
No 127
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=9.1e-13 Score=117.74 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhh
Q 001524 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863 (1060)
Q Consensus 784 ~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~ 863 (1060)
.|...|...++++..++|.++..+|.++++.|+.+.. .+|++|.++++|+|++.++.||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999999874 58899999999999999999999999999999999999999
Q ss_pred hhC
Q 001524 864 RIG 866 (1060)
Q Consensus 864 RiG 866 (1060)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.39 E-value=2.6e-10 Score=141.12 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=109.7
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
...++..|++.|..+...|.++||||.....++.|...|...|+++..+||.++..+|..++..|+.|... +|++|..
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~--vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce--EEEEeCH
Confidence 35678889999999988999999999999999999999999999999999999999999999999988643 7889999
Q ss_pred cccccCcccCCEEEEeCC-----CCCchhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 831 GGLGLTLTKADRVIVVDP-----AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D~-----~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
.+.|++++.++.||++|. +-++..+.|++||++|. . .-.++.|+...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999996 46889999999999994 3 33355555543
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.2e-10 Score=140.13 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 831 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag 831 (1060)
..|+.++++-+.++.+.|+.|||.+.+....+.|...|...|+++..+...... +-..+|.+ .|. ...+-|+|..+
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~-~EA~IIa~--AG~-~gaVTIATNMA 485 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA-EEARIIAE--AGK-YGAVTVSTQMA 485 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH-hHHHHHHh--cCC-CCcEEEEecCC
Confidence 568999999999999999999999999999999999999999999999987442 22445543 232 22377889999
Q ss_pred ccccCcc---------------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 832 GLGLTLT---------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 832 g~GLNLt---------------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
|+|-|+. +-=+||.-..+-|...+.|..||++|.|.......|
T Consensus 486 GRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 486 GRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9998875 344899999999999999999999999998776544
No 130
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.37 E-value=4.8e-12 Score=129.73 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC--CcEEE
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS--AKIRE 474 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~--~~v~~ 474 (1060)
|+|.+++..+.. ++..++..++|+|||..++..+...+.......+||++| ..++.|-..++.+++.. ..+..
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 899999988775 788999999999999987765555444444569999999 88999999999988765 45566
Q ss_pred EcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc-chH-HHHHHHc
Q 001524 475 YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQ-RAKSLLE 552 (1060)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~sk-~~kal~~ 552 (1060)
+++...... ..........+|+|+|++.+......... .....++||+||+|.+... ... ....+..
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~ilv~T~~~l~~~~~~~~~----------~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 78 LHGGQSISE-DQREVLSNQADILVTTPEQLLDLISNGKI----------NISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp ESTTSCHHH-HHHHHHHTTSSEEEEEHHHHHHHHHTTSS----------TGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccccc-cccccccccccccccCcchhhcccccccc----------ccccceeeccCcccccccccHHHHHHHHHHH
Confidence 655443221 11122235689999999999876654111 1123799999999999663 222 2222333
Q ss_pred C---CCCceEEeecCCCCCCHH
Q 001524 553 I---PSAHRIIISGTPIQNNLK 571 (1060)
Q Consensus 553 l---~a~~RilLTGTPiqN~l~ 571 (1060)
+ ...+.+++||||- .+++
T Consensus 147 ~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp SHTTTTSEEEEEESSST-HHHH
T ss_pred hcCCCCCcEEEEeeCCC-hhHh
Confidence 3 3456899999996 4444
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=1e-10 Score=143.29 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=96.1
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccC---------CCceEEEeC-cccHHHHHHHHHHhcCCCcEEEEcccccchh
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRL---------IKRALVVAP-KTLLSHWIKELTAVGLSAKIREYFGTCVKTR 483 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~---------~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~ 483 (1060)
..+.+||.|+|.|||-.|+.-+..-...+. ..++..|+| +.|++.|+..|.++.....+.+..-+.....
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 356789999999999876544333222211 236788999 9999999999999877776665544443322
Q ss_pred hHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC---CCcc--hHHHHHHHcC----C
Q 001524 484 QYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI---KNPS--TQRAKSLLEI----P 554 (1060)
Q Consensus 484 ~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i---KN~~--sk~~kal~~l----~ 554 (1060)
... ......|+++|++..---........ -...+.++|+||.|.+ +++- +-.++..++. .
T Consensus 405 ~~~---qieeTqVIV~TPEK~DiITRk~gdra--------Y~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e 473 (1674)
T KOG0951|consen 405 GKE---QIEETQVIVTTPEKWDIITRKSGDRA--------YEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEE 473 (1674)
T ss_pred hhh---hhhcceeEEeccchhhhhhcccCchh--------HHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhccc
Confidence 211 12456899999986511111000000 1123678999999999 3322 2334444444 2
Q ss_pred CCceEEeecCCCCCCHHHHHHHHhhhCCCC
Q 001524 555 SAHRIIISGTPIQNNLKELWALFNFCCPEL 584 (1060)
Q Consensus 555 a~~RilLTGTPiqN~l~EL~sLl~fl~p~~ 584 (1060)
..+.++||||- -|.+|..+.+..-.+++
T Consensus 474 ~~RlVGLSATL--PNy~DV~~Fl~v~~~gl 501 (1674)
T KOG0951|consen 474 GSRLVGLSATL--PNYEDVASFLRVDPEGL 501 (1674)
T ss_pred CceeeeecccC--CchhhhHHHhccCcccc
Confidence 34457899996 36777777665443444
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=1.4e-09 Score=133.97 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
...|+.++++-+..+.+.|+.|||-+.+....+.|..+|...|+++-.+..... +.-..+|. +.|.. ..+-|+|..
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~-GaVTIATNM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRP-GALTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCC-CcEEEeccC
Confidence 356999999999999999999999999999999999999999999988887644 22234444 34432 237788899
Q ss_pred cccccCcc-------------------------------------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEE
Q 001524 831 GGLGLTLT-------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873 (1060)
Q Consensus 831 gg~GLNLt-------------------------------------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~V 873 (1060)
+|+|-|+. +-=+||.-..+-|...+.|..||++|.|.......
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99998874 34489999999999999999999999999887654
Q ss_pred E
Q 001524 874 Y 874 (1060)
Q Consensus 874 y 874 (1060)
|
T Consensus 587 ~ 587 (913)
T PRK13103 587 Y 587 (913)
T ss_pred E
Confidence 4
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=2.1e-09 Score=131.08 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=99.1
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
...|+.++++-+.++.+.|+.|||.|.+....+.|...|...|+++..++.... +|+..|=. +.|. ...+.|+|..
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~-~GaVTIATNM 483 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQ-KGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCC-CCeEEEeccc
Confidence 357999999999999899999999999999999999999999999999998643 44433332 4553 2347788899
Q ss_pred cccccCcccCC--------EEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 831 GGLGLTLTKAD--------RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 831 gg~GLNLt~A~--------~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
+|+|.++.-.. +||....+-|...+.|..||++|.|.......|
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 99999975333 999999999999999999999999998776544
No 134
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=4.9e-10 Score=116.99 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHH-HHHHHHHHhhccCCCceEEEeC-cccHHHHHHHH---HHhcCCCcE
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKEL---TAVGLSAKI 472 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlq-aiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~---~k~~~~~~v 472 (1060)
.-|.+.+...+- |...+...-.|+|||-. +++.+..+-.....-.+||+|. ..|..|..+|+ .++.|+.++
T Consensus 67 evqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 67 EVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred HhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 457777765554 56666677899999954 3344444433344447899999 77888887775 567899999
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 473 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
.+++|.....+...+.+ +-.+|++.|++.+....... .+........|+|||.++
T Consensus 143 aVFfGG~~Ikkdee~lk--~~PhivVgTPGrilALvr~k----------~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLK--NCPHIVVGTPGRILALVRNR----------SLNLKNVKHFVLDECDKM 197 (387)
T ss_pred EEEEcceeccccHHHHh--CCCeEEEcCcHHHHHHHHhc----------cCchhhcceeehhhHHHH
Confidence 99998766544443322 35689999999886544321 123344678999999876
No 135
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.13 E-value=7e-09 Score=124.89 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=96.2
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
...|-++|+++|-.|.+ |...++|..|..|||+.|=..++.. .....+++.-+| +.|-.|=.++|+.-+....
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAiala--q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALA--QKHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHH--HhhccceEecchhhhhccchHHHHHHhccccc
Confidence 34577899999977766 8899999999999999765433322 233468999999 5555666678876444333
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch-HHHHHH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST-QRAKSL 550 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s-k~~kal 550 (1060)
...|... +.....++|+|-+++++-.-.. ... -.....||+||.|.+.+..- -++..+
T Consensus 369 --LlTGDvq---------inPeAsCLIMTTEILRsMLYrg--adl--------iRDvE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 369 --LLTGDVQ---------INPEASCLIMTTEILRSMLYRG--ADL--------IRDVEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred --eeeccee---------eCCCcceEeehHHHHHHHHhcc--cch--------hhccceEEEeeeeecccccccccceee
Confidence 3344321 2245689999999998754322 111 12267799999999977443 234433
Q ss_pred H-cCCCC-ceEEeecCC
Q 001524 551 L-EIPSA-HRIIISGTP 565 (1060)
Q Consensus 551 ~-~l~a~-~RilLTGTP 565 (1060)
. .++.+ ..|+||||-
T Consensus 428 iIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeccccceEEEEeccC
Confidence 3 34433 348899994
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.11 E-value=3.4e-08 Score=126.51 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=59.1
Q ss_pred CCCceEEEeccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCC--
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD-- 841 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~----~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~-- 841 (1060)
.+.++|||+.+..+++.+...|.. .++.+ +..+.. ..|.+++++|+.+... +|++|.+..+|+|+.+..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~--iLlgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKA--ILLGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCe--EEEEcceeecccccCCCceE
Confidence 456899999999999999999875 24443 333333 5799999999987644 778889999999998755
Q ss_pred EEEEeCCCC
Q 001524 842 RVIVVDPAW 850 (1060)
Q Consensus 842 ~VIi~D~~W 850 (1060)
.||+.-.|+
T Consensus 748 ~viI~~LPf 756 (850)
T TIGR01407 748 CLVIPRLPF 756 (850)
T ss_pred EEEEeCCCC
Confidence 566666554
No 137
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.09 E-value=1e-09 Score=120.46 Aligned_cols=254 Identities=22% Similarity=0.254 Sum_probs=147.6
Q ss_pred ccCCCcccccCccc--cCCCChHHHHHHHHHHHhhc------CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 379 LSGPRSTYMLPGKI--GNMLFPHQREGLRWLWSLHC------QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 379 l~~~~~~~~lp~~l--~~~L~phQ~egV~wl~~~~~------~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
++.+.....+|..+ ...|-.-|.++|.+....+. .+.|-+|+|.+|.||..|+.++|...+..+. +++|+|
T Consensus 19 ~P~~~y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwv 97 (303)
T PF13872_consen 19 PPDPTYRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWV 97 (303)
T ss_pred CCCCCcccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEE
Confidence 33344455677743 45788999999999887665 3578899999999999999998887766654 456666
Q ss_pred eC-cccHHHHHHHHHHhcCCCc-EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccC-CCcccC-cCCCCCC
Q 001524 451 AP-KTLLSHWIKELTAVGLSAK-IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRG-SSFISD-EAGDDDA 526 (1060)
Q Consensus 451 ~P-~sLl~qW~~E~~k~~~~~~-v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~-~~~~~~-~~~~~~~ 526 (1060)
.. ..|...-.+.+...+.... +..... -..... .--..+|+++||..++........ ...+.. ...+...
T Consensus 98 S~s~dL~~Da~RDl~DIG~~~i~v~~l~~-~~~~~~-----~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~d 171 (303)
T PF13872_consen 98 SVSNDLKYDAERDLRDIGADNIPVHPLNK-FKYGDI-----IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGED 171 (303)
T ss_pred ECChhhhhHHHHHHHHhCCCcccceechh-hccCcC-----CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcC
Confidence 66 7777777777776543321 111111 000000 112568999999999876432100 000000 0000001
Q ss_pred CccEEEEcCCCcCCCcch------HHHHHHHc----CCCCceEEeecCCCCCCHHHHHHHHhhhCCCCC------CChHH
Q 001524 527 IWDYMILDEGHLIKNPST------QRAKSLLE----IPSAHRIIISGTPIQNNLKELWALFNFCCPELL------GDNKW 590 (1060)
Q Consensus 527 ~wd~VIlDEAH~iKN~~s------k~~kal~~----l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l------~~~~~ 590 (1060)
.=.+||+||||+.||..+ ++..++.. ++..+.+-.|||.... +..| .-..+-++| .+...
T Consensus 172 fdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nm---aYm~RLGLWG~gtpf~~~~~ 247 (303)
T PF13872_consen 172 FDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNM---AYMSRLGLWGPGTPFPDFDD 247 (303)
T ss_pred CCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Ccee---eeeeeccccCCCCCCCCHHH
Confidence 114899999999999654 56666544 4556678899998743 2222 112222333 44445
Q ss_pred HHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh--hHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHH
Q 001524 591 FKEKYELPILRGNDKHALDREKRIGSAVAKELRERI--QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 668 (1060)
Q Consensus 591 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l--~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~ 668 (1060)
|...... +. ...++.+...+ ...+++|..+ .......++.++|++.|.+
T Consensus 248 f~~a~~~----gG------------v~amE~vA~dlKa~G~yiaR~LS-------------f~gvef~~~e~~l~~~~~~ 298 (303)
T PF13872_consen 248 FLEAMEK----GG------------VGAMEMVAMDLKARGMYIARQLS-------------FEGVEFEIEEVPLTPEQIK 298 (303)
T ss_pred HHHHHHh----cC------------chHHHHHHHHHHhcchheeeecc-------------cCCceEEEEEecCCHHHHH
Confidence 5444422 11 11122222222 2345555332 4455667888999999999
Q ss_pred HHHH
Q 001524 669 LYEA 672 (1060)
Q Consensus 669 lY~~ 672 (1060)
+|+.
T Consensus 299 ~Yd~ 302 (303)
T PF13872_consen 299 MYDA 302 (303)
T ss_pred HhcC
Confidence 9975
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.06 E-value=4.5e-09 Score=131.07 Aligned_cols=85 Identities=11% Similarity=-0.026 Sum_probs=56.2
Q ss_pred hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHH--HHHcC-CCCceEEeecCCC
Q 001524 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK--SLLEI-PSAHRIIISGTPI 566 (1060)
Q Consensus 490 ~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~k--al~~l-~a~~RilLTGTPi 566 (1060)
.+..++|+++|+..+.++.-... +....+..||+||||++....+-.+- ..+.- +..+..++|+.|-
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~r----------i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGI----------IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCC----------CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 56788999999999998764322 23455789999999999765543322 22222 4456788999997
Q ss_pred CC--CHHHHHHHHhhhCCCC
Q 001524 567 QN--NLKELWALFNFCCPEL 584 (1060)
Q Consensus 567 qN--~l~EL~sLl~fl~p~~ 584 (1060)
.- ....+-.+++-|....
T Consensus 74 ~~~~g~~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 74 AFTMGFSPLETKMRNLFLRH 93 (814)
T ss_pred ccccchHHHHHHHHHhCcCe
Confidence 63 3445555555554443
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.97 E-value=1.2e-07 Score=116.90 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCH-HHHHHHHHHhhcCCCccEEEEecCC
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA-SDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~-~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
..|+.++++-+.+..+.|+.|||-|.+....+.|...|...|+++..++..... +.=.++|.+ .|. .-.+-|+|..
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~-~G~VTIATNM 483 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGR-KGSITIATNM 483 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCC-CCcEEEeccc
Confidence 458999999988889999999999999999999999999999999999997433 333456655 343 2237788899
Q ss_pred cccccCc
Q 001524 831 GGLGLTL 837 (1060)
Q Consensus 831 gg~GLNL 837 (1060)
+|+|.|+
T Consensus 484 AGRGTDI 490 (870)
T CHL00122 484 AGRGTDI 490 (870)
T ss_pred cCCCcCe
Confidence 9999664
No 140
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.89 E-value=3.9e-08 Score=120.55 Aligned_cols=372 Identities=19% Similarity=0.172 Sum_probs=205.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKI 472 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v 472 (1060)
..|-+-|..++..+........-.+|.-.||+|||-.-+.+++..+..+ +-+||++| .+|..|-...|+..+. .++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 4577889999998887552335668888999999998888888877665 78999999 9999998888887655 666
Q ss_pred EEEcccccc-hhhHHHHHhh-hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC--CCcchHH--
Q 001524 473 REYFGTCVK-TRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--KNPSTQR-- 546 (1060)
Q Consensus 473 ~~~~g~~~~-~~~~~~~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i--KN~~sk~-- 546 (1060)
.+++..-.. .+...+..+. +...|||-|...+-.... +..+||+||=|-- |..+.-+
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----------------~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----------------NLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----------------hccEEEEeccccccccCCcCCCcC
Confidence 666654333 3333333332 567899999887754433 2478999999985 3333222
Q ss_pred ----HHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhcc-cccCCCcchhhHHHHhhHHHHHH
Q 001524 547 ----AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP-ILRGNDKHALDREKRIGSAVAKE 621 (1060)
Q Consensus 547 ----~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~p-i~~~~~~~~~~~~~~~~~~~~~~ 621 (1060)
+........-..|+-||||. ++-++.. ... .+ ..-.+.+++... .......+........+..
T Consensus 337 ARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~---~~g-~y-~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~---- 404 (730)
T COG1198 337 ARDVAVLRAKKENAPVVLGSATPS---LESYANA---ESG-KY-KLLRLTNRAGRARLPRVEIIDMRKEPLETGRS---- 404 (730)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCC---HHHHHhh---hcC-ce-EEEEccccccccCCCcceEEeccccccccCcc----
Confidence 22222234455688999994 3333222 111 00 000111122200 0000000000000000100
Q ss_pred HHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC-
Q 001524 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH- 700 (1060)
Q Consensus 622 L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h- 700 (1060)
+++.+++.++.... .+...++++. ...+..+ .+++-|.|
T Consensus 405 ----lS~~Ll~~i~~~l~------------~geQ~llfln-----------------------RRGys~~-l~C~~Cg~v 444 (730)
T COG1198 405 ----LSPALLEAIRKTLE------------RGEQVLLFLN-----------------------RRGYAPL-LLCRDCGYI 444 (730)
T ss_pred ----CCHHHHHHHHHHHh------------cCCeEEEEEc-----------------------cCCccce-eecccCCCc
Confidence 33333433333221 1111222221 0000000 01111221
Q ss_pred --------hhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhhccCCCce
Q 001524 701 --------PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNV 772 (1060)
Q Consensus 701 --------P~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~g~Kv 772 (1060)
+..+.+.. ..+..|..+.. ..+-..+-+-|...
T Consensus 445 ~~Cp~Cd~~lt~H~~~--------------------~~L~CH~Cg~~-------------------~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 445 AECPNCDSPLTLHKAT--------------------GQLRCHYCGYQ-------------------EPIPQSCPECGSEH 485 (730)
T ss_pred ccCCCCCcceEEecCC--------------------CeeEeCCCCCC-------------------CCCCCCCCCCCCCe
Confidence 11111000 00000000000 00000111224455
Q ss_pred EEEeccHHHHHHHHHHHhhc--CCeEEEEECCCCHHH--HHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCC
Q 001524 773 LIFSQTRKMLNLIQESIGSK--GYKFLRIDGTTKASD--RVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848 (1060)
Q Consensus 773 LIFsq~~~~ld~L~~~L~~~--gi~~~ridG~~s~~e--R~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~ 848 (1060)
|+++-.= .+.+++.|... +.++.++|+.++... -..++..|.+|+.. ||+-|+...-|+|++....|.++|.
T Consensus 486 L~~~G~G--terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--ILiGTQmiaKG~~fp~vtLVgvl~a 561 (730)
T COG1198 486 LRAVGPG--TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--ILIGTQMIAKGHDFPNVTLVGVLDA 561 (730)
T ss_pred eEEeccc--HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--eeecchhhhcCCCcccceEEEEEec
Confidence 6665432 46666666664 789999999887543 46789999999876 9999999999999999999998876
Q ss_pred CC---C---------chhhhhhhhhhhhhCCcCcEEEEEEecCC
Q 001524 849 AW---N---------PSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880 (1060)
Q Consensus 849 ~W---N---------p~~~~QAiGRa~RiGQ~k~V~VyrLvt~g 880 (1060)
+- + ...+.|..||++|-+-...|.|-.+-...
T Consensus 562 D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 562 DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 62 2 25789999999998777777765444444
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=4.5e-07 Score=112.62 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=97.8
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-HHHHHhhcCCCccEEEEecCC
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-KIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~-~iI~~F~~~~~~~V~LlST~a 830 (1060)
..|+.++++-+.++.+.|+.|||-+.+....+.|..+|...|+++-.++.... +++ ++|.+ .|.. -.+-|+|..
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~--AG~~-GaVTIATNM 685 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAE--AGQP-GTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHh--cCCC-CcEEEeccC
Confidence 56999999999999999999999999999999999999999999988887644 333 44443 2221 237788899
Q ss_pred cccccCcc--------cCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEE
Q 001524 831 GGLGLTLT--------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 831 gg~GLNLt--------~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
+|+|-++. +-=+||.-..+-|...+.|..||++|.|.......|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 99998875 556899999999999999999999999998775543
No 142
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.88 E-value=8.8e-08 Score=119.98 Aligned_cols=149 Identities=21% Similarity=0.211 Sum_probs=101.9
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC--
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL-- 468 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~-- 468 (1060)
....|.|+|++++.-+-+ +.+.+++.+||.|||+.+-.+++..+..+ .+++..+| +.|..|-..+|..-+.
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~~--qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRDG--QRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHcC--CceEeccchhhhhhhHHHHHHHHhhhh
Confidence 556789999999977766 89999999999999998877666555544 56999999 7777787777765333
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHH-
Q 001524 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA- 547 (1060)
Q Consensus 469 ~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~- 547 (1060)
...+-.+.|... +.....|+++|-+.+++-.-.- . ........||+||.|.|....-.+.
T Consensus 190 ~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg--~--------~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 190 ADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRG--S--------ESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred hhhccceeccee---------eCCCCceEEeeHHHHHHHhccC--c--------ccccccceEEEEeeeeccccccchhH
Confidence 222333334321 2345678888889998754221 1 1233467899999999977554333
Q ss_pred -HHHHcCCCC-ceEEeecCC
Q 001524 548 -KSLLEIPSA-HRIIISGTP 565 (1060)
Q Consensus 548 -kal~~l~a~-~RilLTGTP 565 (1060)
..+..++.. +-++||||-
T Consensus 251 EE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCC
Confidence 334445554 668899994
No 143
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.87 E-value=6.1e-08 Score=114.41 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=93.5
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~ 471 (1060)
...|-|+|..+|.-+ .++...++..-|..|||+.|--.|+..++.+ .|++.-.| ++|-.|-.+|+..-+.+
T Consensus 127 PF~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred CcccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 456889999988644 3478889999999999998765555544443 68999999 66666767777543322
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHH--HH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA--KS 549 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~--ka 549 (1060)
|....|.-. +......+++|-+.+++-.-... . -......||+||.|.++...-.+. ..
T Consensus 199 VGLMTGDVT---------InP~ASCLVMTTEILRsMLYRGS--E--------vmrEVaWVIFDEIHYMRDkERGVVWEET 259 (1041)
T KOG0948|consen 199 VGLMTGDVT---------INPDASCLVMTTEILRSMLYRGS--E--------VMREVAWVIFDEIHYMRDKERGVVWEET 259 (1041)
T ss_pred cceeeccee---------eCCCCceeeeHHHHHHHHHhccc--h--------HhheeeeEEeeeehhccccccceeeeee
Confidence 222233221 12356789999999986442211 1 122356699999999987543321 12
Q ss_pred HHcCCCC-ceEEeecCC
Q 001524 550 LLEIPSA-HRIIISGTP 565 (1060)
Q Consensus 550 l~~l~a~-~RilLTGTP 565 (1060)
+.-++.. +-+.||||-
T Consensus 260 IIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 260 IILLPDNVRFVFLSATI 276 (1041)
T ss_pred EEeccccceEEEEeccC
Confidence 3334444 447799994
No 144
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.87 E-value=1.4e-07 Score=114.27 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc--CCCcE-E
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG--LSAKI-R 473 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~--~~~~v-~ 473 (1060)
.+|++ ++....++...++..++-.|||+...-++-..++....+-++.|+| ++++.|-..++..-. +...- .
T Consensus 514 ~WQ~e----lLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 514 EWQRE----LLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred HHHHH----HhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 46766 4445566889999999999999998888888888888899999999 888888776664322 11111 1
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEeeHHHHHhcccccc-CCCcccCcCCCCCCCccEEEEcCCCcCCCcc-hHHHHHHH
Q 001524 474 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLR-GSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQRAKSLL 551 (1060)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~-~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-sk~~kal~ 551 (1060)
...|. -.+.+.+.. -.+.|+||-++.+....-.-. ...| -....+||+||.|.|.|.. +..+..+.
T Consensus 590 sl~g~--ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~--------cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 590 SLLGD--LTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKF--------CERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hhHhh--hhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhh--------hhcceEEEechhhhccccccchHHHHHH
Confidence 11111 122222221 157899999998876443210 0000 1235799999999998854 55666666
Q ss_pred cCCCCceEEeecCCCCCCHHHHHHHHh
Q 001524 552 EIPSAHRIIISGTPIQNNLKELWALFN 578 (1060)
Q Consensus 552 ~l~a~~RilLTGTPiqN~l~EL~sLl~ 578 (1060)
.+-.-.-++||||- +|+..++-.++
T Consensus 658 ~li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred HhcCCCeeEEeccc--CCHHHHHHHHH
Confidence 66666678999994 77777776666
No 145
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.86 E-value=6e-08 Score=124.34 Aligned_cols=160 Identities=23% Similarity=0.172 Sum_probs=102.3
Q ss_pred CCChHHHHHHHHHHH-h-----hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc
Q 001524 395 MLFPHQREGLRWLWS-L-----HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG 467 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~-~-----~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~ 467 (1060)
..+.||..+++..+. . ...++||++.|-+|+|||++++-++..+........++||+- .-|-.|-..+|..+.
T Consensus 248 ~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~ 327 (962)
T COG0610 248 YQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFG 327 (962)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHH
Confidence 345566666653222 1 134578999999999999998877777777666667888888 556688889999886
Q ss_pred CCCcEEEEcccccchhhHHHHHhhh--CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH
Q 001524 468 LSAKIREYFGTCVKTRQYELQYVLQ--DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 545 (1060)
Q Consensus 468 ~~~~v~~~~g~~~~~~~~~~~~~~~--~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk 545 (1060)
....... ... ....+...+. ..+|+|||-+.|........ ........-+||+||||+- ....
T Consensus 328 ~~~~~~~-~~~----s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~--------~~~~~~~~ivvI~DEaHRS--Q~G~ 392 (962)
T COG0610 328 KVAFNDP-KAE----STSELKELLEDGKGKIIVTTIQKFNKAVKEDE--------LELLKRKNVVVIIDEAHRS--QYGE 392 (962)
T ss_pred Hhhhhcc-ccc----CHHHHHHHHhcCCCcEEEEEecccchhhhccc--------ccccCCCcEEEEEechhhc--cccH
Confidence 6544322 111 1112222222 45899999998876543220 0012344678999999995 3333
Q ss_pred HHHHHHc-CCCCceEEeecCCCCCC
Q 001524 546 RAKSLLE-IPSAHRIIISGTPIQNN 569 (1060)
Q Consensus 546 ~~kal~~-l~a~~RilLTGTPiqN~ 569 (1060)
..+.++. ++...-++.||||+.-.
T Consensus 393 ~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 393 LAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred HHHHHHHHhccceEEEeeCCccccc
Confidence 4444433 45566788999998643
No 146
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.83 E-value=4.9e-07 Score=110.81 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=85.4
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCC-
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLS- 469 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~- 469 (1060)
....+.-.|+.=+..+. +|..--+..|||+|||.-.+.+ .++-....++++||+| ..|+.|-.+-+.++...
T Consensus 79 ~G~~~ws~QR~WakR~~----rg~SFaiiAPTGvGKTTfg~~~--sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLV----RGKSFAIIAPTGVGKTTFGLLM--SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCCCchHHHHHHHHHHH----cCCceEEEcCCCCchhHHHHHH--HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 34466777875333333 3566556669999999643332 3333333489999999 66778888888887632
Q ss_pred ----CcEEEEcccccchh-hHHHHHh-hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 470 ----AKIREYFGTCVKTR-QYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 470 ----~~v~~~~g~~~~~~-~~~~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
..+. ||+.-.... ...+..+ .++++|+|||-+.+.++...+. ..+||+|++|-+..+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~------------~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS------------KLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc------------ccCCCEEEEccHHHH
Confidence 2233 777633332 3333333 3469999999999998887664 356999999999876
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=1.4e-06 Score=107.48 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT-KASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~-s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
..|+.++++-+.++.+.|+.|||-+.+....+.|...|...|+++..++..- ..+.=.++|.+ .|.. --+-|+|..
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~-GaVTIATNM 498 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRK-GAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCC-CcEEEeccC
Confidence 5699999999999999999999999999999999999999999999999973 33333456654 3332 236778899
Q ss_pred cccccCc
Q 001524 831 GGLGLTL 837 (1060)
Q Consensus 831 gg~GLNL 837 (1060)
+|+|-++
T Consensus 499 AGRGTDI 505 (939)
T PRK12902 499 AGRGTDI 505 (939)
T ss_pred CCCCcCE
Confidence 9998554
No 148
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.82 E-value=7e-08 Score=107.93 Aligned_cols=211 Identities=22% Similarity=0.219 Sum_probs=119.8
Q ss_pred ceEEEEecCCHHHHHHHHHHHhhHH--HhhhcC-----------------CChHHHHHHHHHHhcChhhhhhhhhhhhhh
Q 001524 654 NEMIVWLRLTSCQRQLYEAFLNSEI--VLSAFD-----------------GSPLAALTILKKICDHPLLLTKRAAEDVLD 714 (1060)
Q Consensus 654 ~e~vv~~~ls~~Q~~lY~~~l~~~~--~~~~~~-----------------~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~ 714 (1060)
.++.+.++|+..|+.+|+.++.... ....+. .....++..++.+|+||.|+..........
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 4567889999999999999876311 111110 112345677899999999976543211110
Q ss_pred hcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHHHHHHHHhh-----ccCCCceEEEeccHHHHHHHHHHH
Q 001524 715 GMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL-----IPEGHNVLIFSQTRKMLNLIQESI 789 (1060)
Q Consensus 715 ~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~-----~~~g~KvLIFsq~~~~ld~L~~~L 789 (1060)
.. .........|+|+++|-.+|..+ ...+-+++|.++..+++++|+.+|
T Consensus 84 ------~~--------------------e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~l 137 (297)
T PF11496_consen 84 ------LS--------------------EPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLL 137 (297)
T ss_dssp ------ST--------------------THHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHH
T ss_pred ------cc--------------------hHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHH
Confidence 00 01111223799999999999999 556778999999999999999999
Q ss_pred hhcCCeEEEEECCCCHHHHHHHH------------HHhhc--CCCccEEEEecCCccc----ccCcccCCEEEEeCCCCC
Q 001524 790 GSKGYKFLRIDGTTKASDRVKIV------------NDFQE--GDVAPIFLLTSQVGGL----GLTLTKADRVIVVDPAWN 851 (1060)
Q Consensus 790 ~~~gi~~~ridG~~s~~eR~~iI------------~~F~~--~~~~~V~LlST~agg~----GLNLt~A~~VIi~D~~WN 851 (1060)
...++.|-|+.|..-..+....- ..... .....++|+++.-... .++-...+.||.||+.++
T Consensus 138 lGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d 217 (297)
T PF11496_consen 138 LGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFD 217 (297)
T ss_dssp TTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--
T ss_pred ccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCC
Confidence 99999999999976544433222 11111 1123456666554333 244467789999999999
Q ss_pred chhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHH
Q 001524 852 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 891 (1060)
Q Consensus 852 p~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~ 891 (1060)
+....-..-|.....+ +.+-|+||+..+|+|.-++....
T Consensus 218 ~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 218 TSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred CCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 8875555455443333 78999999999999998876543
No 149
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.82 E-value=6.7e-08 Score=117.59 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=89.4
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcC--CCcEEEEcccccchhhHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGL--SAKIREYFGTCVKTRQYELQY 489 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~--~~~v~~~~g~~~~~~~~~~~~ 489 (1060)
.+++.|.+.|++.|||+.+=-++....-. ..+.+|.+.| .+.+.-=..++..+.. +..+..|.|.....+..
T Consensus 239 e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~---- 313 (1008)
T KOG0950|consen 239 ERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR---- 313 (1008)
T ss_pred cccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----
Confidence 57899999999999998765444432221 1357888999 5555445555555532 34555566554433322
Q ss_pred hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc--h----HHHHHHHcCCCC--ceEEe
Q 001524 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--T----QRAKSLLEIPSA--HRIII 561 (1060)
Q Consensus 490 ~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--s----k~~kal~~l~a~--~RilL 561 (1060)
+.-.|.|+|-++-......+-... ......+||+||-|.+.... . .+++.+..-... ..|++
T Consensus 314 --k~~sv~i~tiEkanslin~lie~g--------~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGM 383 (1008)
T KOG0950|consen 314 --KRESVAIATIEKANSLINSLIEQG--------RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGM 383 (1008)
T ss_pred --cceeeeeeehHhhHhHHHHHHhcC--------CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeee
Confidence 345789999887766555443221 23346899999999994432 2 234444433222 36889
Q ss_pred ecCCCCCCHHHHHHHHh
Q 001524 562 SGTPIQNNLKELWALFN 578 (1060)
Q Consensus 562 TGTPiqN~l~EL~sLl~ 578 (1060)
|||-- |+.+|...++
T Consensus 384 SATi~--N~~lL~~~L~ 398 (1008)
T KOG0950|consen 384 SATIP--NNSLLQDWLD 398 (1008)
T ss_pred ecccC--ChHHHHHHhh
Confidence 99974 4444444433
No 150
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.74 E-value=9.8e-08 Score=106.31 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=88.8
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~g---i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
.-.|.||||....-.|-|++++..+| |.++-++|..++.+|.+-++.|....-. |||+|.++++||++++.-.+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk--flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK--FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE--EEEEehhhhccccccCCceEE
Confidence 34589999999999999999998874 7899999999999999999999987655 999999999999999999999
Q ss_pred EeCCCCCchhhhhhhhhhhhhC
Q 001524 845 VVDPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 845 i~D~~WNp~~~~QAiGRa~RiG 866 (1060)
.+..|-....|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999998854
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=2.1e-06 Score=108.22 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh-ccCCCceEEEeC-cccHHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAP-KTLLSHWIKELTA 465 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~-~~~~k~vLIV~P-~sLl~qW~~E~~k 465 (1060)
+||.|++....++.....+..+++-.|||+|||+.+|+....... .+...++++.+. .+-+.|-.+|+++
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 699999999999999999999999999999999987765554433 232345666666 5567888889887
No 152
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.65 E-value=1.2e-05 Score=103.84 Aligned_cols=94 Identities=15% Similarity=0.256 Sum_probs=65.0
Q ss_pred HHHHHHHhhc-cCCCceEEEeccHHHHHHHHHHHhhcCC--eEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCccc
Q 001524 757 FILSLLDKLI-PEGHNVLIFSQTRKMLNLIQESIGSKGY--KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 833 (1060)
Q Consensus 757 ~L~~lL~~~~-~~g~KvLIFsq~~~~ld~L~~~L~~~gi--~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~ 833 (1060)
.+.+.|.++. ..+.++|||..+..++..+...|..... .+..+.-+++...|.+++++|+.++.. +|+.+.+..+
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~--iLlG~~sFwE 816 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA--ILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe--EEEecCcccC
Confidence 3444444433 2455788888888999999888875422 133333334435689999999986544 7778899999
Q ss_pred ccCcccC--CEEEEeCCCC-Cc
Q 001524 834 GLTLTKA--DRVIVVDPAW-NP 852 (1060)
Q Consensus 834 GLNLt~A--~~VIi~D~~W-Np 852 (1060)
|+|+++. ..|||.-.|+ +|
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p 838 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPP 838 (928)
T ss_pred ccccCCCceEEEEEecCCCCCC
Confidence 9999874 7888887776 44
No 153
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.65 E-value=1.5e-05 Score=97.37 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhc
Q 001524 400 QREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG 467 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~ 467 (1060)
|.+-+.++...+..+...++-.+||+|||+..+.-+..+......+++||++| ..|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 78888888888877777788889999999876554433333233579999999 778889888776543
No 154
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-07 Score=108.19 Aligned_cols=197 Identities=24% Similarity=0.301 Sum_probs=111.8
Q ss_pred ccccCccccCCCChHHHHHHHHHHHhhcC------CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHH
Q 001524 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQ------GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLS 457 (1060)
Q Consensus 385 ~~~lp~~l~~~L~phQ~egV~wl~~~~~~------~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~ 457 (1060)
.+.+|..-...|---|+++|.|....+.. .-|-+|+|.-|.||-.++..+|...+-. ..+++|++.- .-|-.
T Consensus 254 qlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-GRKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 254 QLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-GRKRALWFSVSSDLKF 332 (1300)
T ss_pred EEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-ccceeEEEEecccccc
Confidence 34466655667888999999998876543 2467899999999977766655544322 3467777766 55555
Q ss_pred HHHHHHHHhcCCCcEEEEccccc---chhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCc------
Q 001524 458 HWIKELTAVGLSAKIREYFGTCV---KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW------ 528 (1060)
Q Consensus 458 qW~~E~~k~~~~~~v~~~~g~~~---~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~w------ 528 (1060)
.-.+.+...+-.. +.++.-..- +..... ....+.+|+++||..+.......... +-... -....|
T Consensus 333 DAERDL~DigA~~-I~V~alnK~KYakIss~e--n~n~krGViFaTYtaLIGEs~~~~~k-yrtR~--rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 333 DAERDLRDIGATG-IAVHALNKFKYAKISSKE--NTNTKRGVIFATYTALIGESQGKGGK-YRTRF--RQLLQWCGEDFE 406 (1300)
T ss_pred chhhchhhcCCCC-ccceehhhcccccccccc--cCCccceeEEEeeHhhhhhccccCch-HHHHH--HHHHHHhhhccc
Confidence 6666666543221 222111100 000000 00124589999999887544321100 00000 000112
Q ss_pred cEEEEcCCCcCCC-------cchHHHHHHHc----CCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHH
Q 001524 529 DYMILDEGHLIKN-------PSTQRAKSLLE----IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 592 (1060)
Q Consensus 529 d~VIlDEAH~iKN-------~~sk~~kal~~----l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~ 592 (1060)
.+||+||||+.|| ..|++.+++.. |+..+.+-.|||-.. |=.++.-.++-++||....|.
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~ 477 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFP 477 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCc
Confidence 6899999999999 34566665544 466677788998543 223344445556666555443
No 155
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.61 E-value=1.8e-06 Score=102.35 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=82.1
Q ss_pred ceEEEeccHHHHHHHHHHHhhc----C--C--eEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCE
Q 001524 771 NVLIFSQTRKMLNLIQESIGSK----G--Y--KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADR 842 (1060)
Q Consensus 771 KvLIFsq~~~~ld~L~~~L~~~----g--i--~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~ 842 (1060)
-+|||=...+..+.....|... + . -++-++|+++.+++.++.+.--. +.+-++++|..+...|++.+...
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~--g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPP--GKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCC--CcceEEEEcceeeeeEEecceEE
Confidence 6999999988777777777653 1 1 25678999999887766433222 45669999999999999999888
Q ss_pred EE--------EeCCCC-------CchhhhhhhhhhhhhCCcCcEEEEEEecCCCH
Q 001524 843 VI--------VVDPAW-------NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 882 (1060)
Q Consensus 843 VI--------i~D~~W-------Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTi 882 (1060)
|| .|+|.- -|..-.||.-|+||.|.+.+..+|||.++.-.
T Consensus 338 VVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 338 VVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 86 334321 12456778888888888999999999998877
No 156
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.61 E-value=1.5e-05 Score=101.38 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred HHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccC
Q 001524 757 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLT 836 (1060)
Q Consensus 757 ~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLN 836 (1060)
.+.+.|..+...+.++||+..+..+++.+...|....+.. ...|... .|.+++++|+.++.. +|+.|....+|+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~--vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ--ILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe--EEEecchhhCCCC
Confidence 3444444444456789998888899999988887655544 5556432 366799999986544 7888899999999
Q ss_pred cc--cCCEEEEeCCC
Q 001524 837 LT--KADRVIVVDPA 849 (1060)
Q Consensus 837 Lt--~A~~VIi~D~~ 849 (1060)
++ .+..||+.-.|
T Consensus 710 ~p~~~~~~viI~kLP 724 (820)
T PRK07246 710 FVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCeEEEEEecCC
Confidence 96 35667776644
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.56 E-value=1.9e-05 Score=99.13 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcCCe-EEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCccc--CCEEE
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKGYK-FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK--ADRVI 844 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~gi~-~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~--A~~VI 844 (1060)
.+.++|||..+-.++..+...|...... .+...|..+ +..++++|...... .+++.+....+|+|+.+ ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3448999999999999999999876653 445555443 45899999987653 58999999999999976 47888
Q ss_pred EeCCCCC-c-----------------------------hhhhhhhhhhhhhCCcCcEE
Q 001524 845 VVDPAWN-P-----------------------------STDNQSVDRAYRIGQKKDVV 872 (1060)
Q Consensus 845 i~D~~WN-p-----------------------------~~~~QAiGRa~RiGQ~k~V~ 872 (1060)
+.-.|+= | ....|++||+.|--+.+-+.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 8877763 2 35679999999955555444
No 158
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.52 E-value=1.3e-06 Score=102.51 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=80.3
Q ss_pred ceEEEeccHH----HHHHHHHHHhhc------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccC
Q 001524 771 NVLIFSQTRK----MLNLIQESIGSK------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 840 (1060)
Q Consensus 771 KvLIFsq~~~----~ld~L~~~L~~~------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A 840 (1060)
-+|||-.-.+ +.++|...|... ++.++-|...++..-+.++...- ..+.+-++++|.++...|++.+.
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a--~~~vRK~IvATNIAETSLTi~gI 642 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKA--EGGVRKCIVATNIAETSLTIPGI 642 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccC--CCCceeEEEeccchhhceeecce
Confidence 4677765433 455555555432 67888889999877666553332 23456689999999999999999
Q ss_pred CEEEEeCC----CCC-----------chhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHH
Q 001524 841 DRVIVVDP----AWN-----------PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887 (1060)
Q Consensus 841 ~~VIi~D~----~WN-----------p~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~ 887 (1060)
..||=... .+| |..-+||--|++|.|.+.+-..|||.|+.+...-++
T Consensus 643 ~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 643 RYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred EEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 98874211 123 444556666777777788999999999998888777
No 159
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.51 E-value=3.7e-06 Score=105.02 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=81.4
Q ss_pred CCceEEEeccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001524 769 GHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 844 (1060)
Q Consensus 769 g~KvLIFsq~~~~ld~L~~~L~~----~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 844 (1060)
..-+|||-.-....+.....|.. ..+.++-++|.++.+++.++++--..+. +-++++|.++..+|++.+...||
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~--RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK--RKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc--ceEEEEccccccceeeCCeEEEe
Confidence 44699999999888888888887 3578999999999999888544333332 33899999999999999998887
Q ss_pred --------EeCCCCC-------chhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 845 --------VVDPAWN-------PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 845 --------i~D~~WN-------p~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
.||+.-. |..-..|.-|+||.|.+.+-..|||.+++..+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 2333211 11222233445555557888999999987666
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.45 E-value=1.5e-05 Score=99.48 Aligned_cols=124 Identities=18% Similarity=0.310 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcc--CCCceEEEeccHHHHHHHHHHHhhc-------CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEE
Q 001524 755 ISFILSLLDKLIP--EGHNVLIFSQTRKMLNLIQESIGSK-------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 825 (1060)
Q Consensus 755 l~~L~~lL~~~~~--~g~KvLIFsq~~~~ld~L~~~L~~~-------gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~L 825 (1060)
...+..++..+.+ ....+|||-.....+..+...|..+ .+-+..+|+.++..+++.+...--.| .+-+|
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g--~RKII 474 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG--TRKII 474 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC--cchhh
Confidence 3444555544433 2457999999988888888877642 25577889999998887775554443 34589
Q ss_pred EecCCcccccCcccCCEEE--------EeCCC---------C-CchhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 826 LTSQVGGLGLTLTKADRVI--------VVDPA---------W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 826 lST~agg~GLNLt~A~~VI--------i~D~~---------W-Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
++|..+..+|++.++-.|| .|||. | +-+.-.||.||||| .++-+.|+|++..-.+
T Consensus 475 laTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 475 LATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 9999999999998877775 45654 3 44666788888777 6677899999876443
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.39 E-value=4.6e-06 Score=104.66 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHhhcC----------------------------------CCCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 397 FPHQREGLRWLWSLHCQ----------------------------------GKGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~~----------------------------------~~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.|||..+|..+...+.. ..+..+.++||+|||.+++..|..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999988764321 13567899999999999999999998888
Q ss_pred CCCceEEEeCc-ccHHHHHHH---------HHHhcCCCcEEEEcccccc----hh---hHHHHHhhh-------CCCEEE
Q 001524 443 LIKRALVVAPK-TLLSHWIKE---------LTAVGLSAKIREYFGTCVK----TR---QYELQYVLQ-------DKGVLL 498 (1060)
Q Consensus 443 ~~k~vLIV~P~-sLl~qW~~E---------~~k~~~~~~v~~~~g~~~~----~~---~~~~~~~~~-------~~~VvI 498 (1060)
...++|||||. ++.....+- |...+.+..+..+...+.+ .+ ...+..... ...|+|
T Consensus 88 ~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv 167 (986)
T PRK15483 88 GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLL 167 (986)
T ss_pred CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEE
Confidence 88899999995 444444333 2232333333332222111 01 111111111 357999
Q ss_pred eeHHHHHhccccccCCCcccCcC--CCCCCCc-------cEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCC
Q 001524 499 TTYDIVRNNSKSLRGSSFISDEA--GDDDAIW-------DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 499 tTy~~l~~~~~~l~~~~~~~~~~--~~~~~~w-------d~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPi 566 (1060)
+|-+++.+....... .+.. ......| -.||+||+|++.. ..+.++++..+...+.+.-|||--
T Consensus 168 ~niqa~n~~~~~~~~----~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 168 INAGMLNSASMTRDD----YDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred EehHHhcccccccch----hhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 999999764211000 0110 0011223 3699999999965 345778899999989888999963
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.34 E-value=7.5e-06 Score=100.17 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=72.6
Q ss_pred HHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCccc--
Q 001524 762 LDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK-- 839 (1060)
Q Consensus 762 L~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~-- 839 (1060)
|..-...|++|.|||....++++++.++...+.+++.++|..+..+. +.| ..++ +++=|.+..+|+++-.
T Consensus 275 L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W---~~~~-VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 275 LLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW---KKYD-VVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc---ccee-EEEEeceEEEEeccchhh
Confidence 33334578999999999999999999999999999999987765522 223 2233 5566678888998853
Q ss_pred CCEEEEe--CCCCCch--hhhhhhhhhhhhCCcCcEEEE
Q 001524 840 ADRVIVV--DPAWNPS--TDNQSVDRAYRIGQKKDVVVY 874 (1060)
Q Consensus 840 A~~VIi~--D~~WNp~--~~~QAiGRa~RiGQ~k~V~Vy 874 (1060)
.+.|..| .....|. ...|.+||+-.++. ++++||
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 4556555 2223344 46999999977764 344444
No 163
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.31 E-value=6.2e-06 Score=94.87 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=99.3
Q ss_pred cchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh----cCC----eEEEEECCCCHHHHHHHHHHhhcCCCccE
Q 001524 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGY----KFLRIDGTTKASDRVKIVNDFQEGDVAPI 823 (1060)
Q Consensus 752 S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~----~gi----~~~ridG~~s~~eR~~iI~~F~~~~~~~V 823 (1060)
+.|+.....++.++...|-|+|-||..+...+++...... .+- .+..|.|+...++|.++-.+.-.|.-.
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~-- 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC-- 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee--
Confidence 4566666777778888899999999999987766543322 221 245678999999999998887777644
Q ss_pred EEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHH
Q 001524 824 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886 (1060)
Q Consensus 824 ~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I 886 (1060)
-+++|.|...||++...+-|+....|.+.+...|-.|||+|-....= .|| .+..+.++...
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SL-avy-va~~~PVDQ~Y 646 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSL-AVY-VAFLGPVDQYY 646 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCce-EEE-EEeccchhhHh
Confidence 78899999999999999999999999999999999999999654332 222 33345555443
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.26 E-value=7.6e-06 Score=80.89 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCchHHHHHHHH-HHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHh
Q 001524 413 QGKGGILGDDMGLGKTMQICGFL-AGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV 490 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali-~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~ 490 (1060)
+|.-.+|-..+|.|||-.++.-+ .... ...+++||+.| ..++..-.+.++ +..+... .....+ ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i--~~~~rvLvL~PTRvva~em~~aL~----~~~~~~~--t~~~~~-----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI--KRRLRVLVLAPTRVVAEEMYEALK----GLPVRFH--TNARMR-----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH--HTT--EEEEESSHHHHHHHHHHTT----TSSEEEE--STTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH--HccCeEEEecccHHHHHHHHHHHh----cCCcccC--ceeeec-----cc
Confidence 44556788899999998766533 2222 23479999999 444554444443 3333222 111111 11
Q ss_pred hhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHH-HHHcC---CCCceEEeecCCC
Q 001524 491 LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK-SLLEI---PSAHRIIISGTPI 566 (1060)
Q Consensus 491 ~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~k-al~~l---~a~~RilLTGTPi 566 (1060)
....-|-++||.++...... ......|++||+||||.. .+.|-... .+..+ .....|.+||||-
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-----------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-----------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-----------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cCCCcccccccHHHHHHhcC-----------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 24556888999988665422 113467999999999984 33333222 22222 2235688999993
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.11 E-value=3.3e-05 Score=86.87 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCC----CceEEEeC-cccHHHHHHHHHHh
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI----KRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~----k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
.||.|++-+..++..+..+..+|+-.+||+|||+..+..+......... .+++++++ .+++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 5999999999998888888899999999999999877655433332222 37888888 44555555566543
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.11 E-value=3.3e-05 Score=86.87 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCC----CceEEEeC-cccHHHHHHHHHHh
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI----KRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~----k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
.||.|++-+..++..+..+..+|+-.+||+|||+..+..+......... .+++++++ .+++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 5999999999998888888899999999999999877655433332222 37888888 44555555566543
No 167
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2e-05 Score=94.32 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=44.7
Q ss_pred CccEEEEecCCcccccCcccCCEEEE--------e---------CCCC-CchhhhhhhhhhhhhCCcCcEEEEEEecC
Q 001524 820 VAPIFLLTSQVGGLGLTLTKADRVIV--------V---------DPAW-NPSTDNQSVDRAYRIGQKKDVVVYRLMTC 879 (1060)
Q Consensus 820 ~~~V~LlST~agg~GLNLt~A~~VIi--------~---------D~~W-Np~~~~QAiGRa~RiGQ~k~V~VyrLvt~ 879 (1060)
..+.++++|.++...|++++..+||= | ...| +-+.-.||.|||||+| +-|.|||...
T Consensus 629 g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 629 GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhh
Confidence 35679999999999999999999873 3 3345 6677788888888866 4678888764
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00025 Score=87.65 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=90.4
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
.-.|+.++++-+......|++|||-+.+....+.+...|.+.|++...+...-. .|+.-|-.+--... -+-++|..
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~g--aVTiATNM 486 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPG--AVTIATNM 486 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCC--cccccccc
Confidence 356999999999999999999999999999999999999999999988888766 44443333322222 26678899
Q ss_pred cccccCcccCC-----------EEEEeCCCCCchhhhhhhhhhhhhCCc
Q 001524 831 GGLGLTLTKAD-----------RVIVVDPAWNPSTDNQSVDRAYRIGQK 868 (1060)
Q Consensus 831 gg~GLNLt~A~-----------~VIi~D~~WNp~~~~QAiGRa~RiGQ~ 868 (1060)
+|+|-++.--. +||--.-+=+-..+.|-.||++|.|-.
T Consensus 487 AGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 487 AGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 99999874322 566677777888889999999999944
No 169
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.03 E-value=0.0014 Score=82.77 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=35.2
Q ss_pred ccEEEEecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCc
Q 001524 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870 (1060)
Q Consensus 821 ~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~ 870 (1060)
..+++|+|++...|+|+- .+.+|. ++. .....+|+.||+.|-|+...
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 457999999999999975 444443 332 34578999999999987653
No 170
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.99 E-value=0.00021 Score=84.46 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCceEEEeccHHHHHHHHHHHhh----c-----CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcc
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGS----K-----GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLT 838 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~----~-----gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt 838 (1060)
+..-+|||-.-.+.++.....|.. . .+-++-|+.+.+...+.++.+-- .++.+-++++|..+...|++.
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePt--P~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPT--PPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCC--CCCceeEEEeecchhhceeec
Confidence 334588887666544444443332 2 35678899999988777664432 334566888999999999999
Q ss_pred cCCEEEEeCCC------CCc--------------hhhhhhhhhhhhhCCcCcEEEEEEecCCCHH
Q 001524 839 KADRVIVVDPA------WNP--------------STDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883 (1060)
Q Consensus 839 ~A~~VIi~D~~------WNp--------------~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiE 883 (1060)
+...|| ||- +|| +.-.||.||||| +.+-..|||.+.-+.+
T Consensus 550 gI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR---tgPGKCfRLYt~~aY~ 609 (902)
T KOG0923|consen 550 GIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR---TGPGKCFRLYTAWAYE 609 (902)
T ss_pred CeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCC---CCCCceEEeechhhhh
Confidence 998887 443 333 455666666666 5566688998865443
No 171
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.95 E-value=1.5e-05 Score=87.65 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCccEEEEecCCcccccCcccC-------CEE-EEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCC
Q 001524 810 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA-------DRV-IVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 881 (1060)
Q Consensus 810 ~iI~~F~~~~~~~V~LlST~agg~GLNLt~A-------~~V-Ii~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gT 881 (1060)
...+.|++|. ..|+|+ +.+|+.|+.|++- .|| |.++++|+.....|-+||+||.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g~-k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 5677999997 445555 5999999999852 344 56999999999999999999999999865555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 001524 882 VEEKIYRKQIFKGGLFKTATEHKE 905 (1060)
Q Consensus 882 iEE~I~~rq~~K~~l~~~~~~~~~ 905 (1060)
.|.|......+|..-..+.+.+..
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 788888888888888777775543
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.91 E-value=0.00011 Score=78.94 Aligned_cols=66 Identities=27% Similarity=0.414 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHhhcCCCC-eEEEcCCCCchHHHHHHHHHHHh------hccCCCceEEEeC-cccHHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGLF------HSRLIKRALVVAP-KTLLSHWIKELTA 465 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~G-gILaDemGLGKTlqaiali~~l~------~~~~~k~vLIV~P-~sLl~qW~~E~~k 465 (1060)
|-+.|+.+|..++. ..+ +++.-+.|+|||.+..+++..+. .....+++||++| ...+.+-...+.+
T Consensus 2 ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999987766 455 78889999999988777777773 3556689999999 5556776666655
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.80 E-value=0.0001 Score=78.23 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCC---cE
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSA---KI 472 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~---~v 472 (1060)
.-+.|...+..|.. ..-.++.-+.|+|||+.|++.+..+...+...+++|+-|..-+..+ + -|.|+. +.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED---L-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc---c-ccCCCCHHHHH
Confidence 45789999998885 5667788899999999999988888777777888888885422222 1 122221 01
Q ss_pred EEEccc-----ccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHH
Q 001524 473 REYFGT-----CVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 547 (1060)
Q Consensus 473 ~~~~g~-----~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~ 547 (1060)
..+... ............+..+.|-+.+...++. ..+...+||+|||+++. ..+.-
T Consensus 77 ~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----------------rt~~~~~iIvDEaQN~t--~~~~k 137 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----------------RTFDNAFIIVDEAQNLT--PEELK 137 (205)
T ss_dssp -TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------------------B-SEEEEE-SGGG----HHHHH
T ss_pred HHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----------------ccccceEEEEecccCCC--HHHHH
Confidence 000000 0000111233344567777777766653 23446899999999983 34555
Q ss_pred HHHHcCCCCceEEeecCCCCCCHH
Q 001524 548 KSLLEIPSAHRIIISGTPIQNNLK 571 (1060)
Q Consensus 548 kal~~l~a~~RilLTGTPiqN~l~ 571 (1060)
..+.++....+++++|-|.|.+..
T Consensus 138 ~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHTTB-TT-EEEEEE--------
T ss_pred HHHcccCCCcEEEEecCceeecCC
Confidence 567778888999999999876544
No 174
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.76 E-value=6.4e-05 Score=87.29 Aligned_cols=101 Identities=25% Similarity=0.279 Sum_probs=80.7
Q ss_pred cCCCceEEEeccHHHHHHHHHHHhhcCCe-EEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001524 767 PEGHNVLIFSQTRKMLNLIQESIGSKGYK-FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 767 ~~g~KvLIFsq~~~~ld~L~~~L~~~gi~-~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 845 (1060)
.+|.-|+-||.. -+-.+...++++|.. ++.|.|+.+++.|.+--..||+..+..-+|++|.|.|+|||| ..+|||+
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF 432 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE
Confidence 367777777753 344456667777654 999999999999999999999976666688999999999998 4789999
Q ss_pred eCCC---------CCchhhhhhhhhhhhhCCcCc
Q 001524 846 VDPA---------WNPSTDNQSVDRAYRIGQKKD 870 (1060)
Q Consensus 846 ~D~~---------WNp~~~~QAiGRa~RiGQ~k~ 870 (1060)
++.. -......|..|||||.|.+-+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 8776 234677899999999987754
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.56 E-value=0.00034 Score=76.28 Aligned_cols=147 Identities=19% Similarity=0.143 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCc---E
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK---I 472 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~---v 472 (1060)
.-..|...+.|+.. ..-.++.-+.|+|||+.|++++......+...+++|+-|.--. .|...|.|+.. +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPGDIAEKF 131 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCCCHHHHH
Confidence 55688888887765 4567778899999999999888755433434555555453211 12222333211 0
Q ss_pred EEEccc-----ccchhhHHHHHhh--hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH
Q 001524 473 REYFGT-----CVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 545 (1060)
Q Consensus 473 ~~~~g~-----~~~~~~~~~~~~~--~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk 545 (1060)
..|... ............+ ..+.|.|.+...++.. ...-++|||||||++.- .+
T Consensus 132 ~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-----------------tl~~~~vIvDEaqn~~~--~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-----------------TFENAVVILDEAQNVTA--AQ 192 (262)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-----------------cccCCEEEEechhcCCH--HH
Confidence 000000 0000000111121 2456777777766542 23347899999999854 56
Q ss_pred HHHHHHcCCCCceEEeecCCCCCC
Q 001524 546 RAKSLLEIPSAHRIIISGTPIQNN 569 (1060)
Q Consensus 546 ~~kal~~l~a~~RilLTGTPiqN~ 569 (1060)
....+.++....+++++|-|-|.+
T Consensus 193 ~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHHHhhcCCCCEEEEeCChhhcc
Confidence 666777889999999999997654
No 176
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.48 E-value=0.0018 Score=74.33 Aligned_cols=108 Identities=20% Similarity=0.335 Sum_probs=72.5
Q ss_pred ceEEEeccHHHHHHHHHHHhhc---------CCeEEEEECCCCHHHHHHHHHHhh---cCCCccEEEEecCCcccccCcc
Q 001524 771 NVLIFSQTRKMLNLIQESIGSK---------GYKFLRIDGTTKASDRVKIVNDFQ---EGDVAPIFLLTSQVGGLGLTLT 838 (1060)
Q Consensus 771 KvLIFsq~~~~ld~L~~~L~~~---------gi~~~ridG~~s~~eR~~iI~~F~---~~~~~~V~LlST~agg~GLNLt 838 (1060)
-+|||-...+.++...+.+... .++++-++ +.+++++.+--. ++...+-+++||..+...|.+.
T Consensus 255 DilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltid 330 (699)
T KOG0925|consen 255 DILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTID 330 (699)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeec
Confidence 4888877766555444444321 23455555 344444433222 2344567899999999999998
Q ss_pred cCCEEEEeCCC------CC-----------chhhhhhhhhhhhhCCcCcEEEEEEecCCCHHH
Q 001524 839 KADRVIVVDPA------WN-----------PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEE 884 (1060)
Q Consensus 839 ~A~~VIi~D~~------WN-----------p~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE 884 (1060)
+.-.|| ||- +| |..-.||.-|++|.|.+++-..|||.++...+.
T Consensus 331 giv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 331 GIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred cEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 877776 443 33 566789999999999999999999999765543
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.17 E-value=0.0017 Score=79.32 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=88.8
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH-HH-------HHHHH-HHhcCCCcEEEEcccccchhhHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SH-------WIKEL-TAVGLSAKIREYFGTCVKTRQYE 486 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl-~q-------W~~E~-~k~~~~~~v~~~~g~~~~~~~~~ 486 (1060)
++=+-++||+|||.+-+-+|..+.++...-+++||||...+ .- -.++| ..++.+.+...|.......+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~-- 153 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF-- 153 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH--
Confidence 45577899999999999999999999988999999995443 21 12334 334444444433332111111
Q ss_pred HHHhhhCCCEEEeeHHHHHhc---cccccCCCcccCcCC--CCCCC-------ccEEEEcCCCcCCCcchHHHHHHHcCC
Q 001524 487 LQYVLQDKGVLLTTYDIVRNN---SKSLRGSSFISDEAG--DDDAI-------WDYMILDEGHLIKNPSTQRAKSLLEIP 554 (1060)
Q Consensus 487 ~~~~~~~~~VvItTy~~l~~~---~~~l~~~~~~~~~~~--~~~~~-------wd~VIlDEAH~iKN~~sk~~kal~~l~ 554 (1060)
.........|++++.+.+.+. ...+..... ..... ..... --.||+||-|++... .+.+.++.++.
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~-~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~i~~l~ 231 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESM-ENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGAIKQLN 231 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhh-cccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHHHHhhC
Confidence 111223467888888888765 221111000 00000 00011 146999999999765 88999999998
Q ss_pred CCceEEeecC
Q 001524 555 SAHRIIISGT 564 (1060)
Q Consensus 555 a~~RilLTGT 564 (1060)
....+=-+||
T Consensus 232 pl~ilRfgAT 241 (985)
T COG3587 232 PLLILRFGAT 241 (985)
T ss_pred ceEEEEeccc
Confidence 8887777787
No 178
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.12 E-value=0.038 Score=70.32 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=73.6
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH-----HHHHHHHHHhcCCCcEEEEcccccchhhH
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-----SHWIKELTAVGLSAKIREYFGTCVKTRQY 485 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl-----~qW~~E~~k~~~~~~v~~~~g~~~~~~~~ 485 (1060)
+..+.+.++|.+.|+|||++| -++.+ +....+++.-++|...+ ..|.+-|.+. .+..+....|.....
T Consensus 1156 y~~nd~v~vga~~gsgkt~~a--e~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~--- 1228 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACA--ELALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD--- 1228 (1674)
T ss_pred ecccceEEEecCCCCchhHHH--HHHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc---
Confidence 456678999999999999643 23222 35556799999997765 4588888776 444444444432211
Q ss_pred HHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcc
Q 001524 486 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543 (1060)
Q Consensus 486 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 543 (1060)
.+.....+|+|.|++.+.... . -...++.|+||.|.+....
T Consensus 1229 --lkl~~~~~vii~tpe~~d~lq-~--------------iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1229 --LKLLQKGQVIISTPEQWDLLQ-S--------------IQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred --hHHhhhcceEEechhHHHHHh-h--------------hhhcceEeeehhhhhcccC
Confidence 123457899999999886542 1 1236899999999997644
No 179
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.04 E-value=0.004 Score=68.85 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=69.6
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH----HHHHHHHHHhc
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL----SHWIKELTAVG 467 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl----~qW~~E~~k~~ 467 (1060)
+...+++-|.-|+-.| ..|-|.-..||=|||+++.. ++.+... ..+++=||+....+ .+|...|-++.
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l-~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAAL-PAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHH-HHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHH-HHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4445677788777555 34779999999999997643 3333322 23678888886555 34766665543
Q ss_pred CCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 468 LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 468 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
. ..+...........+. ..-.++|+.+|-..+.-+.- +. .+...........++++||||+..+
T Consensus 146 G-lsv~~~~~~~~~~~r~----~~Y~~dI~Y~t~~~~~fD~L--rd-~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERR----EAYAADIVYGTNSEFGFDYL--RD-NLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHHH----HHHHSSEEEEEHHHHHHHHH--HH-TT-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHHH----HHHhCcccccccchhhHHHH--HH-HHhhccchhccCCCCEEEEeccceE
Confidence 3 3333333322211111 12246899999876653210 00 0000011112456899999999876
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.02 E-value=0.0031 Score=74.84 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=50.8
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCccc-HHHHHHH
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKE 462 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sL-l~qW~~E 462 (1060)
+...|-+-|+.++.+.... ..=.++--|+|+|||.+..-++..+...+ +++||.+|..+ +.|..+.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~---k~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINN---KDLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CCccccHHHHHHHHHHhcc---CCceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCchHHHHHHHHH
Confidence 4556888999999988761 13345666999999999988888887665 89999999655 6777664
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.88 E-value=0.0056 Score=76.20 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcEEEEcccccchhhHH-HHHh-hhCCCEEEe
Q 001524 423 MGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-LQYV-LQDKGVLLT 499 (1060)
Q Consensus 423 mGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~-~~~~-~~~~~VvIt 499 (1060)
.|+|||-..+.++...+..+ +.+||++| .+++.|+...|...++...+.+++.......++. +..+ .+...|||-
T Consensus 169 ~GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 49999999888888777654 67999999 8999999999999887667777877554443332 2222 234579999
Q ss_pred eHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC--CCcchH----H--HHHHHcCCCCceEEeecCCC
Q 001524 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--KNPSTQ----R--AKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 500 Ty~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i--KN~~sk----~--~kal~~l~a~~RilLTGTPi 566 (1060)
|...+-... .+..+|||||=|.- |...+- + +........-..|+.|+||.
T Consensus 247 tRSAvFaP~-----------------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 247 TRSAVFAPV-----------------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred cceeEEecc-----------------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 987654322 23689999999975 332221 1 11122234455677899994
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.85 E-value=0.017 Score=61.38 Aligned_cols=131 Identities=22% Similarity=0.240 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEE
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIRE 474 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~ 474 (1060)
+|-+-|++++..++. ...+-.+|.-+.|+|||.....+...+... ..++++++|..-...- +.+-.
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~Aa~~---L~~~~------- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKAAKE---LREKT------- 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHHHHH---HHHHH-------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHHHHH---HHHhh-------
Confidence 367899999999876 122346777899999998665555444443 3799999996543221 22110
Q ss_pred EcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCC
Q 001524 475 YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 554 (1060)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~ 554 (1060)
++-..|-..+.......... ........++||||||..+.+ ......+..+.
T Consensus 67 --------------------~~~a~Ti~~~l~~~~~~~~~------~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 --------------------GIEAQTIHSFLYRIPNGDDE------GRPELPKKDVLIVDEASMVDS--RQLARLLRLAK 118 (196)
T ss_dssp --------------------TS-EEEHHHHTTEECCEECC------SSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-
T ss_pred --------------------CcchhhHHHHHhcCCccccc------ccccCCcccEEEEecccccCH--HHHHHHHHHHH
Confidence 01111222222211111000 000023357999999999833 34444455554
Q ss_pred C-CceEEeecCCCC
Q 001524 555 S-AHRIIISGTPIQ 567 (1060)
Q Consensus 555 a-~~RilLTGTPiq 567 (1060)
. ..+++|.|-|-|
T Consensus 119 ~~~~klilvGD~~Q 132 (196)
T PF13604_consen 119 KSGAKLILVGDPNQ 132 (196)
T ss_dssp T-T-EEEEEE-TTS
T ss_pred hcCCEEEEECCcch
Confidence 4 678999999865
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.81 E-value=0.0046 Score=71.72 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=34.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH-HHHHHH
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW-IKELTA 465 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW-~~E~~k 465 (1060)
.|+--..|+|||+.++.++..+........++++|+...+.+. ...+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 3556689999999999999888444556788999995555444 444543
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.66 E-value=0.016 Score=69.19 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=55.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCccc-HHHHHHHHHHhc
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTAVG 467 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sL-l~qW~~E~~k~~ 467 (1060)
.|-..|..||...+. ..=.||--++|+|||++..++++.+.+. ..+|+||++|..+ +.|-..-|.+-+
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhcC
Confidence 467789999998887 5667999999999999998888888766 5689999999555 677777777654
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.61 E-value=0.014 Score=71.89 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCC---CceEEEeCcccHHH-HHHHHHHhcCCCcEE
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI---KRALVVAPKTLLSH-WIKELTAVGLSAKIR 473 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~---k~vLIV~P~sLl~q-W~~E~~k~~~~~~v~ 473 (1060)
+.|+.++...+. .+-.+|.-..|+|||.++..++..+...... .++++++|..-... ..+-+..........
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789999987777 6778999999999999888887776543322 47899999654433 332232211110000
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcC
Q 001524 474 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553 (1060)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l 553 (1060)
.. ......+--.|...+....... ..+.. .......+++||||||-.+-. ....+.+..+
T Consensus 224 ------~~--------~~~~~~~~a~TiHrlLg~~~~~--~~~~~--~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al 283 (586)
T TIGR01447 224 ------EA--------LIAALPSEAVTIHRLLGIKPDT--KRFRH--HERNPLPLDVLVVDEASMVDL--PLMAKLLKAL 283 (586)
T ss_pred ------hh--------hhhccccccchhhhhhcccCCc--chhhh--cccCCCcccEEEEcccccCCH--HHHHHHHHhc
Confidence 00 0000001111222111110000 00000 011234589999999999843 4556667778
Q ss_pred CCCceEEeecCCCC
Q 001524 554 PSAHRIIISGTPIQ 567 (1060)
Q Consensus 554 ~a~~RilLTGTPiq 567 (1060)
+...|++|.|=|-|
T Consensus 284 ~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 284 PPNTKLILLGDKNQ 297 (586)
T ss_pred CCCCEEEEECChhh
Confidence 88889999998755
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.56 E-value=0.0052 Score=63.48 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=55.5
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecC--CcccccCccc--
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ--VGGLGLTLTK-- 839 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~g----i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~--agg~GLNLt~-- 839 (1060)
.+.++|||..+-..++.+...+...+ +.+. .. ...++.++++.|..++.. +|+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCch
Confidence 45789999999999999999998753 3222 22 245789999999997654 888877 8999999975
Q ss_pred CCEEEEeCCCC
Q 001524 840 ADRVIVVDPAW 850 (1060)
Q Consensus 840 A~~VIi~D~~W 850 (1060)
+..||+.-.|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 77899988886
No 187
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.40 E-value=0.017 Score=67.25 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccC-CCceEEEeCccc
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKRALVVAPKTL 455 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~-~k~vLIV~P~sL 455 (1060)
..+||-|.+-..-+.+....++.|+|-++.|+|||+.-++++..+..+.+ ..+-||-|..++
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 35899998766656666677889999999999999998887766655444 345577776443
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.34 E-value=0.029 Score=71.03 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=83.6
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCc
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 392 l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~ 471 (1060)
....|-+-|++++..+.. .+-.+|.-..|+|||.++-+++..+...+...++++++|.........+... ..
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g----~~ 391 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG----LT 391 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC----Cc
Confidence 345688999999988754 5678899999999998777776665544333678889997766665544321 00
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHH
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551 (1060)
Q Consensus 472 v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~ 551 (1060)
...+...+.. ....... .........++||||||+.+-. ......+.
T Consensus 392 ------------a~Tih~lL~~-------------~~~~~~~------~~~~~~~~~~llIvDEaSMvd~--~~~~~Ll~ 438 (720)
T TIGR01448 392 ------------ASTIHRLLGY-------------GPDTFRH------NHLEDPIDCDLLIVDESSMMDT--WLALSLLA 438 (720)
T ss_pred ------------cccHHHHhhc-------------cCCccch------hhhhccccCCEEEEeccccCCH--HHHHHHHH
Confidence 0001111110 0000000 0000123468999999999943 34456666
Q ss_pred cCCCCceEEeecCCCC
Q 001524 552 EIPSAHRIIISGTPIQ 567 (1060)
Q Consensus 552 ~l~a~~RilLTGTPiq 567 (1060)
.++...|++|-|=|-|
T Consensus 439 ~~~~~~rlilvGD~~Q 454 (720)
T TIGR01448 439 ALPDHARLLLVGDTDQ 454 (720)
T ss_pred hCCCCCEEEEECcccc
Confidence 7888889999998865
No 189
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.32 E-value=0.04 Score=69.58 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=61.4
Q ss_pred HHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHHhhc----CCCccEEEEecCC
Q 001524 756 SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQE----GDVAPIFLLTSQV 830 (1060)
Q Consensus 756 ~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~----~~~~~V~LlST~a 830 (1060)
..+.+.|.++...+..+|||..+..+++.+...|... ++. +.+.|. ..|.++++.|.. +.. .+|+.+..
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~--~VL~g~~s 594 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG--SVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC--eEEEEecc
Confidence 3444444444444445888888888888998888643 333 455664 257788877774 333 36777799
Q ss_pred cccccCccc--CCEEEEeCCCC
Q 001524 831 GGLGLTLTK--ADRVIVVDPAW 850 (1060)
Q Consensus 831 gg~GLNLt~--A~~VIi~D~~W 850 (1060)
..+|+|+++ +..||+.-.|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999975 78999987776
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.27 E-value=0.048 Score=68.05 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc-cHHHHHHHHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTA 465 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s-Ll~qW~~E~~k 465 (1060)
..|-+.|+.+|.+.+. .....++--++|+|||.++++++..+...+ .++||++|.. .+.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 3578999999988765 224567788999999999888888776544 4899999954 46677777765
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.25 E-value=0.025 Score=69.85 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=38.6
Q ss_pred cCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHH
Q 001524 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG 433 (1060)
Q Consensus 388 lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaia 433 (1060)
+|-.+...+||-|+.-...++.......+|+|-.|||+|||+.-|+
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 5666677789999998888888888888999999999999986443
No 192
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.17 E-value=0.003 Score=81.91 Aligned_cols=185 Identities=24% Similarity=0.326 Sum_probs=99.0
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCc--hHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCC
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLG--KTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSA 470 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLG--KTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~ 470 (1060)
...+.+||.....-..... .....+++..|+| ||+.+..+...........+.++++|..+..+|..+...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred ccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhcccc
Confidence 4456677776653332211 2237899999999 89988888777777777889999999999999999877652211
Q ss_pred cEEEEcc-cccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCc---cEEEEcCCCcCCCcc---
Q 001524 471 KIREYFG-TCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW---DYMILDEGHLIKNPS--- 543 (1060)
Q Consensus 471 ~v~~~~g-~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~w---d~VIlDEAH~iKN~~--- 543 (1060)
....... ...................++...+......... ........| +++++||+|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKR--------REALLEAEWGERDLLVIDEAHNLGSSEGTR 231 (866)
T ss_pred chhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhh--------hhhhhcccccchhhhhcchHhhcccccccc
Confidence 1111000 0000000000000000000222222222211110 011123335 899999999997742
Q ss_pred ------hHHHHHHHcCCC--------CceEEeecCCCCCCHHHHHHHHhhhCCCCCCC
Q 001524 544 ------TQRAKSLLEIPS--------AHRIIISGTPIQNNLKELWALFNFCCPELLGD 587 (1060)
Q Consensus 544 ------sk~~kal~~l~a--------~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~ 587 (1060)
...+..+..+.. -....+++||......+++....+..+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 232 KLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 233333333211 12247899999888887777566655544433
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.14 E-value=0.044 Score=67.82 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeCcccHHHHHHH-HHHhcCCCcE
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKTLLSHWIKE-LTAVGLSAKI 472 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P~sLl~qW~~E-~~k~~~~~~v 472 (1060)
..+.|+.++..... .+-++|.-+.|+|||.++..++..+.... ...++++++|..-...=..| +..-......
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 34799999977766 56788999999999998888887765532 23478888996554443333 2211110000
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHc
Q 001524 473 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552 (1060)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~ 552 (1060)
. ...+ .....-..|...+.... .....+. ........+++||||||..+- ....++.+..
T Consensus 229 ~------~~~~--------~~~~~~a~TiHrlLg~~---~~~~~~~-~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~a 288 (615)
T PRK10875 229 T------DEQK--------KRIPEEASTLHRLLGAQ---PGSQRLR-YHAGNPLHLDVLVVDEASMVD--LPMMARLIDA 288 (615)
T ss_pred c------hhhh--------hcCCCchHHHHHHhCcC---CCccchh-hccccCCCCCeEEEChHhccc--HHHHHHHHHh
Confidence 0 0000 00000011111111100 0000000 011123457999999999983 4456677778
Q ss_pred CCCCceEEeecCCCC
Q 001524 553 IPSAHRIIISGTPIQ 567 (1060)
Q Consensus 553 l~a~~RilLTGTPiq 567 (1060)
++...|++|-|=|-|
T Consensus 289 l~~~~rlIlvGD~~Q 303 (615)
T PRK10875 289 LPPHARVIFLGDRDQ 303 (615)
T ss_pred cccCCEEEEecchhh
Confidence 888899999998855
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.13 E-value=0.011 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.7
Q ss_pred cEEEEcCCCcCCCcchHHHHHHHcC--CCCceEEeecCC
Q 001524 529 DYMILDEGHLIKNPSTQRAKSLLEI--PSAHRIIISGTP 565 (1060)
Q Consensus 529 d~VIlDEAH~iKN~~sk~~kal~~l--~a~~RilLTGTP 565 (1060)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 579999999984 24445555444 566679999999
No 195
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.06 E-value=0.02 Score=61.61 Aligned_cols=112 Identities=25% Similarity=0.242 Sum_probs=74.2
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc---CC
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG---LS 469 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~---~~ 469 (1060)
...|||-|.+.+..|.. ...+.+.++-.-||-|||-..+-+++.++..+ .+=+-+|||++|+.|-..-+..-. .+
T Consensus 21 ~iliR~~Q~~ia~~mi~-~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 21 NILIRPVQVEIAREMIS-PPSGKNSVMQLNMGEGKTSVIVPMLALALADG-SRLVRVIVPKALLEQMRQMLRSRLGGLLN 98 (229)
T ss_pred CceeeHHHHHHHHHHhC-CCCCCCeEeeecccCCccchHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHHHHHHHHHHHhC
Confidence 44589999999999987 35678899999999999988777777666543 356788999999988777665422 12
Q ss_pred CcEEEEcccc-cchh-----h--HHHHHhhhCCCEEEeeHHHHHh
Q 001524 470 AKIREYFGTC-VKTR-----Q--YELQYVLQDKGVLLTTYDIVRN 506 (1060)
Q Consensus 470 ~~v~~~~g~~-~~~~-----~--~~~~~~~~~~~VvItTy~~l~~ 506 (1060)
..+..+.-.. .... . .........++|+++|++.+.+
T Consensus 99 r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 99 RRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 2232221111 1110 0 1112234578999999997654
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.44 E-value=0.091 Score=65.68 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=90.1
Q ss_pred cccCccccC----CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHH
Q 001524 386 YMLPGKIGN----MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWI 460 (1060)
Q Consensus 386 ~~lp~~l~~----~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~ 460 (1060)
..++|.++. .|-.-|++|+...+. .....-|+++ +|+|||-+...++..+...+ +++|+.+= -+.+.|..
T Consensus 656 ~~~~p~~~~~~~~~LN~dQr~A~~k~L~--aedy~LI~GM-PGTGKTTtI~~LIkiL~~~g--kkVLLtsyThsAVDNIL 730 (1100)
T KOG1805|consen 656 KVLIPKIKKIILLRLNNDQRQALLKALA--AEDYALILGM-PGTGKTTTISLLIKILVALG--KKVLLTSYTHSAVDNIL 730 (1100)
T ss_pred cccCchhhHHHHhhcCHHHHHHHHHHHh--ccchheeecC-CCCCchhhHHHHHHHHHHcC--CeEEEEehhhHHHHHHH
Confidence 334555544 888899999866554 2333445555 59999988888887776554 78998888 55678887
Q ss_pred HHHHHhcCCCcEEEEcccccchhh----------------HHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCC
Q 001524 461 KELTAVGLSAKIREYFGTCVKTRQ----------------YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDD 524 (1060)
Q Consensus 461 ~E~~k~~~~~~v~~~~g~~~~~~~----------------~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~ 524 (1060)
.-+..+... ..-.|...+... ..+...+....||-+|---+- ...+.
T Consensus 731 iKL~~~~i~---~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--------------~plf~ 793 (1100)
T KOG1805|consen 731 IKLKGFGIY---ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--------------HPLFV 793 (1100)
T ss_pred HHHhccCcc---eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--------------chhhh
Confidence 777665432 111222221111 112223344445555432111 01112
Q ss_pred CCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCC
Q 001524 525 DAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQ 567 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiq 567 (1060)
...||++|||||-.|.-+- ++.-+.-..+..|-|-+.|
T Consensus 794 ~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred ccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4459999999998875442 2223445567777776654
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.35 E-value=0.16 Score=49.56 Aligned_cols=56 Identities=25% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcC--CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH
Q 001524 402 EGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 459 (1060)
Q Consensus 402 egV~wl~~~~~~--~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW 459 (1060)
..+.++...... +...++.-++|.|||..+-.++..+. ....+++++........+
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGL 62 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhh
Confidence 334444443333 55678888999999987666665554 223455555554444333
No 198
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.94 E-value=0.15 Score=64.42 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHHHHHhhcCC-----CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH
Q 001524 394 NMLFPHQREGLRWLWSLHCQG-----KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 456 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~-----~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl 456 (1060)
...||-|.+-+..+...+... +-+++=.+||+|||+.-+.-+ .++.....++++|=+....+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPa-i~~A~~~~k~vVIST~T~~L 90 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAG-IPIARAEKKKLVISTATVAL 90 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHH-HHHHHHcCCeEEEEcCCHHH
Confidence 457899999888888776653 344555699999998544322 22222233555555553333
No 199
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=94.54 E-value=0.04 Score=69.13 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=80.8
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccH----HHHHHHHHHhcCCCcEEEEcccccchhhH
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLL----SHWIKELTAVGLSAKIREYFGTCVKTRQY 485 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl----~qW~~E~~k~~~~~~v~~~~g~~~~~~~~ 485 (1060)
+....+.++.+++|.|||+.+-..+...+...+.+++.+|+| +.|+ ..|..-+. .++.++....|.....-.
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~~- 1016 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDVK- 1016 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCChh-
Confidence 344567889999999999987666666666777799999999 6665 45766553 345666666665443311
Q ss_pred HHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc
Q 001524 486 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542 (1060)
Q Consensus 486 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 542 (1060)
.....+++|||++..-.....+....++. .+..+|+||.|.++..
T Consensus 1017 ----~v~~~~~~ittpek~dgi~Rsw~~r~~v~--------~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1017 ----AVREADIVITTPEKWDGISRSWQTRKYVQ--------SVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ----heecCceEEcccccccCccccccchhhhc--------cccceeecccccccCC
Confidence 23467899999998866655444443332 2567999999998654
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.41 E-value=0.11 Score=58.78 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHH-HHhhccCCCceEEEeCcc
Q 001524 397 FPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA-GLFHSRLIKRALVVAPKT 454 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~-~l~~~~~~k~vLIV~P~s 454 (1060)
--+|+-++..|+. ..-.=..|.-.-|+|||+.|+|... ..+..+..++++|--|..
T Consensus 230 n~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 230 NAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred cHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 3478888877765 1112335677899999987665332 233444455666665643
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.39 E-value=0.14 Score=49.26 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~ 461 (1060)
+...+|.-++|+|||..+..++..+.... ..++++.+......|..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHH
Confidence 34568888999999998877776654333 46788887665554443
No 202
>PRK04296 thymidine kinase; Provisional
Probab=94.27 E-value=0.063 Score=56.66 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=26.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.++.-+||.|||..++.++..+... .++++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 4677799999999888888776544 367888865
No 203
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=0.046 Score=64.88 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred EcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHH-----HhcCCCcEEEEcccccchhhH-HHHHhhh
Q 001524 420 GDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELT-----AVGLSAKIREYFGTCVKTRQY-ELQYVLQ 492 (1060)
Q Consensus 420 aDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~-----k~~~~~~v~~~~g~~~~~~~~-~~~~~~~ 492 (1060)
-+.||+|||+++.++|..++..+. +..|+.|- .+++..-..-|. ++.-+.. +.+.+.....+.. .......
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy-r~flffvnq~nilekt~~nftd~~s~kylf~e~-i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN-ININDENIEIKKVNNFSEHND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhh-hhcCCceeeeeeecccCccCC
Confidence 368999999999999988876654 56777776 667665444332 2211111 1111111111110 0011112
Q ss_pred CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC
Q 001524 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 493 ~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 539 (1060)
...|++||-+.+..+.-..+....- -+.+.. .=-+.+-||||++
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~it--ledl~~-~klvfl~deahhl 124 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAIT--LEDLKD-QKLVFLADEAHHL 124 (812)
T ss_pred ceEEEEeehHHHHHHHHhhcccccc--HhhHhh-CceEEEechhhhh
Confidence 3468999999887665332221100 000000 0124677999998
No 204
>PLN03025 replication factor C subunit; Provisional
Probab=94.24 E-value=0.41 Score=54.79 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|.+.+.++......+ ..-|+.-+.|+|||..+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554433333 34688899999999988888877653
No 205
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.07 E-value=0.26 Score=54.53 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHhhcCCCC-eEEEcCCCCchHHHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~G-gILaDemGLGKTlqaiali~~l 438 (1060)
.-+.+..++..+......+.| .+|.-+.|+|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 345666677666554444443 5678899999998666655443
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.46 Score=55.67 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhc--cCCCceEEEeCcc--cHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhh
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHS--RLIKRALVVAPKT--LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVL 491 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~--~~~k~vLIV~P~s--Ll~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~ 491 (1060)
-.++.-++|.|||.++.-+++.+... ...+++.+|+=-. .-..|+ +..|+-...+.+..
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEe---------------
Confidence 34677899999998877666655432 2345677776533 112222 33333222221111
Q ss_pred hCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch---HHHHHHHcCCC--CceEEeecCCC
Q 001524 492 QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST---QRAKSLLEIPS--AHRIIISGTPI 566 (1060)
Q Consensus 492 ~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s---k~~kal~~l~a--~~RilLTGTPi 566 (1060)
.-++..+......+ ...++||||++.+...... .....+..... ...++|+||--
T Consensus 239 ------~~~~~~l~~~L~~~--------------~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 ------IESFKDLKEEITQS--------------KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ------eCcHHHHHHHHHHh--------------CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 11233332222111 2368999999998753222 22223333332 34577999998
Q ss_pred CCCHHHHHHHHhhhCC
Q 001524 567 QNNLKELWALFNFCCP 582 (1060)
Q Consensus 567 qN~l~EL~sLl~fl~p 582 (1060)
++.+.+++.-+..+.+
T Consensus 299 ~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 299 TSDVKEIFHQFSPFSY 314 (388)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 8888888877765544
No 207
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.79 E-value=0.32 Score=48.78 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=38.2
Q ss_pred eEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCccc--CCEEEEeCCCC
Q 001524 795 KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK--ADRVIVVDPAW 850 (1060)
Q Consensus 795 ~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~--A~~VIi~D~~W 850 (1060)
+.+.+-| ....+..++++.|...... .+|+++....+|+|+++ +..||+.-.|+
T Consensus 24 ~~i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444444 4444678999999875432 47777777999999976 67888887665
No 208
>PHA02533 17 large terminase protein; Provisional
Probab=93.50 E-value=0.21 Score=61.05 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
..|.|+|+..+..|.. ++-.++.-+=..|||..+.+++..+........+++++|
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~ 112 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAH 112 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 4588999998887743 445577778899999987766544433344568888999
No 209
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.42 E-value=0.13 Score=63.34 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=100.9
Q ss_pred cCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHH-HHH
Q 001524 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKE-LTA 465 (1060)
Q Consensus 388 lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E-~~k 465 (1060)
.|+.......|||++....|-... -....+.-..-+|||.+++.++.+.....+ .++|+|.| ......|.++ |..
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQDP-GPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeCC-CCEEEEEEcHHHHHHHHHHHHHH
Confidence 566677789999999887765421 345677779999999987777766665554 89999999 6677788754 433
Q ss_pred h---cCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcC---
Q 001524 466 V---GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--- 539 (1060)
Q Consensus 466 ~---~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i--- 539 (1060)
. .|..+-.+..............+.+....+.++..+.- ..+......+|++||...+
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~----------------~~l~s~~~r~~~~DEvD~~p~~ 149 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP----------------SNLRSRPARYLLLDEVDRYPDD 149 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC----------------cccccCCcCEEEEechhhcccc
Confidence 2 22211111110001111111111222233444433221 1233556789999999998
Q ss_pred -CCcchHHHHHHH---cCCCCceEEeecCCCCCCHHHHHHHHh
Q 001524 540 -KNPSTQRAKSLL---EIPSAHRIIISGTPIQNNLKELWALFN 578 (1060)
Q Consensus 540 -KN~~sk~~kal~---~l~a~~RilLTGTPiqN~l~EL~sLl~ 578 (1060)
++.......+.. .+....++++..||....-..|+.++.
T Consensus 150 ~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 150 VGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred CccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 223333443333 345678899999998775555555443
No 210
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=93.29 E-value=3.6 Score=51.47 Aligned_cols=183 Identities=14% Similarity=0.040 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHH-HHHhcCCCcEEE
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE-LTAVGLSAKIRE 474 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E-~~k~~~~~~v~~ 474 (1060)
|.+||++.+.-++. ..||++....|||==-.++.++..+ .....|+++=. ...|..+ |........+.
T Consensus 14 lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~sL~LvLN--~~~~ee~~f~s~lk~~~~t- 82 (892)
T KOG0442|consen 14 LLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPGSLVLVLN--TQEAEEEYFSSKLKEPLVT- 82 (892)
T ss_pred cchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCccceEEEec--CchhhHHHHHHhcCcCCCc-
Confidence 88999998877764 5788999999999554333333322 22233333332 3445544 11111111111
Q ss_pred EcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCC
Q 001524 475 YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 554 (1060)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~ 554 (1060)
...............-.++|+++|.-.+..+.-... ........|+++-||.+.+..+ -+-.++-++
T Consensus 83 --~~~s~ls~~~R~~~Yl~GGv~fiSsRiLvvDlLt~r----------Ip~~ki~gI~vl~Ah~i~ets~-eaFIlRl~R 149 (892)
T KOG0442|consen 83 --EDPSELSVNKRRSKYLEGGVFFISSRILVVDLLTGR----------IPTEKITGILVLNAHTISETSQ-EAFILRLYR 149 (892)
T ss_pred --cChhhcchhhhHHhhhcCCeEEeeeceeeeehhcCc----------cchhHcceEEEechhhhhhcch-hHHHHHHHH
Confidence 100001111112234467888888776654432111 2334568899999999987543 333344443
Q ss_pred CCceE----EeecCCCC--CCHHHHHHHHhhhCCCCCCChHHHHHHhhcccccC
Q 001524 555 SAHRI----IISGTPIQ--NNLKELWALFNFCCPELLGDNKWFKEKYELPILRG 602 (1060)
Q Consensus 555 a~~Ri----lLTGTPiq--N~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~ 602 (1060)
.+.++ +.|--|-+ -.+.-+-..++++.-...--+..|...+..+..+.
T Consensus 150 ~knk~gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~ 203 (892)
T KOG0442|consen 150 SKNKTGFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQL 203 (892)
T ss_pred HhcCCcceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccC
Confidence 33333 24444421 12333444455444443334445555555444433
No 211
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.26 E-value=0.54 Score=52.18 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=19.5
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
+.||.-++|+|||..|-+++..+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999888777665543
No 212
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.15 E-value=0.3 Score=55.92 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCCC--CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHH
Q 001524 400 QREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 462 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E 462 (1060)
|...+.++......+. ..++.-+.|+|||..+.+++..+.......+++.+-...+..+|...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 84 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKY 84 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhh
Confidence 4445666665555554 56888899999999988888777643322333333323334445433
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.75 E-value=0.93 Score=53.96 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=35.3
Q ss_pred ccEEEEcCCCcCCCcchH---HHHHHHc--CCCCceEEeecCCCCCCHHHHHHHHhhhCC
Q 001524 528 WDYMILDEGHLIKNPSTQ---RAKSLLE--IPSAHRIIISGTPIQNNLKELWALFNFCCP 582 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk---~~kal~~--l~a~~RilLTGTPiqN~l~EL~sLl~fl~p 582 (1060)
+++||||-+-+....... +...+.. .+....++|++|+-.+.+.+++..+..+.+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 689999998765332222 2222221 123446889999988888888888776654
No 214
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.34 E-value=0.5 Score=47.52 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCC----eEEEEECCCCHHHHHHHHHHhhcCCC-ccEEEEecCC--cccccCccc--CCEEEEeCCCC
Q 001524 782 LNLIQESIGSKGY----KFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQV--GGLGLTLTK--ADRVIVVDPAW 850 (1060)
Q Consensus 782 ld~L~~~L~~~gi----~~~ridG~~s~~eR~~iI~~F~~~~~-~~V~LlST~a--gg~GLNLt~--A~~VIi~D~~W 850 (1060)
++.+...+...+. ..+.+.+.. ..+..++++.|+.... ...+|+++.. .++|+|+++ +..||+.-.|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4445555544432 334455543 2355789999987532 0136666555 899999976 67888887775
No 215
>PF13245 AAA_19: Part of AAA domain
Probab=92.30 E-value=0.32 Score=43.35 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=34.1
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhc--cCCCceEEEeCccc-HHHHHHHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHS--RLIKRALVVAPKTL-LSHWIKEL 463 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~--~~~k~vLIV~P~sL-l~qW~~E~ 463 (1060)
-.++--+.|+|||.+++..+..+... ...+++||++|..- +.+-.+.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34558899999999888888888742 33679999999544 44433333
No 216
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.26 E-value=1.6 Score=51.88 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=80.1
Q ss_pred CCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc-ccccCcccCCEEEEe
Q 001524 768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-GLGLTLTKADRVIVV 846 (1060)
Q Consensus 768 ~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag-g~GLNLt~A~~VIi~ 846 (1060)
...++|||.++=-..-.|..+|+..++.|+.++--++.++-.++-..|..|. .+++|.|-++- =.=..+.++.+||+|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~-~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR-KPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC-ceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 4567999998877777899999999999999999999999999999999997 56677774432 123456789999999
Q ss_pred CCCCCchhhhhhhhhhhhhC
Q 001524 847 DPAWNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 847 D~~WNp~~~~QAiGRa~RiG 866 (1060)
.||-+|.-|...+.-...-.
T Consensus 378 ~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESS 397 (442)
T ss_pred CCCCChhHHHHHHhhhcccc
Confidence 99999999988886655443
No 217
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.25 E-value=0.61 Score=54.08 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGKG---GILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~G---gILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|..++..+...+..++. -|+.-+.|+|||..|..++..++..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45667777777777763 5778899999999999888888763
No 218
>PRK06526 transposase; Provisional
Probab=91.88 E-value=0.46 Score=52.54 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 403 GLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 403 gV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
+..|+-. +.+.+|.-++|+|||..+.++...+...+ .+++++.. .+|..++.
T Consensus 91 ~~~fi~~----~~nlll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~t~----~~l~~~l~ 142 (254)
T PRK06526 91 TLDFVTG----KENVVFLGPPGTGKTHLAIGLGIRACQAG--HRVLFATA----AQWVARLA 142 (254)
T ss_pred cCchhhc----CceEEEEeCCCCchHHHHHHHHHHHHHCC--CchhhhhH----HHHHHHHH
Confidence 3355543 67888999999999999998887665433 45555433 35665554
No 219
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=0.95 Score=56.72 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...++.|...+..++ .-|+.-+.|+|||..+..|+..+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666655444442 3378889999999988888887764
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=0.69 Score=55.37 Aligned_cols=43 Identities=26% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 399 HQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 399 hQ~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
.|..++..|......++ .-|+.-+.|+|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 35555555555444443 24888999999999888888776543
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.72 E-value=1.4 Score=50.43 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=40.8
Q ss_pred cCCCChHHHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
...+||+|....+.+...+..++ .-++.-+.|+||+..|.+|+..++...
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 45689999999988888766654 446788999999999999998887654
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.69 E-value=0.52 Score=50.06 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=69.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEE
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVL 497 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~Vv 497 (1060)
+++-++|.|||.++.-+++.+... .+++.+|+--.--.-=.++++.|+-...+..+.............
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~--------- 73 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR--------- 73 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH---------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH---------
Confidence 577899999999888777777655 567777776433222233344443333444333221111110000
Q ss_pred EeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchH---HHHHHHcC-CCCceEEeecCCCCCCHHHH
Q 001524 498 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ---RAKSLLEI-PSAHRIIISGTPIQNNLKEL 573 (1060)
Q Consensus 498 ItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk---~~kal~~l-~a~~RilLTGTPiqN~l~EL 573 (1060)
+.+.. . ....+|+|+||=+.+--+.... +.+.+..+ +....++|++|--+..+..+
T Consensus 74 ----~~l~~----~------------~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 74 ----EALEK----F------------RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp ----HHHHH----H------------HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred ----HHHHH----H------------hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 01110 0 0123689999998776443221 22222222 44556779999877766666
Q ss_pred HHHHhhhCC
Q 001524 574 WALFNFCCP 582 (1060)
Q Consensus 574 ~sLl~fl~p 582 (1060)
......+.+
T Consensus 134 ~~~~~~~~~ 142 (196)
T PF00448_consen 134 LAFYEAFGI 142 (196)
T ss_dssp HHHHHHSST
T ss_pred HHHhhcccC
Confidence 666555544
No 223
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.67 E-value=0.84 Score=52.45 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.+||+|....+.+...-.....-++.-+.|.|||..|.+++..+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 368999988888877422223446788999999999999998887644
No 224
>PRK08116 hypothetical protein; Validated
Probab=90.90 E-value=1.6 Score=48.72 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 462 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E 462 (1060)
+.|.+|.-++|+|||..+.+++..+... ..+++++.-..++..+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHH
Confidence 3467889999999999999988887654 3566666545555544433
No 225
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=90.74 E-value=1.7 Score=55.44 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~q 458 (1060)
..|-+-|+.++..+.. ..+-.+|....|+|||.++-+++..+... ..++++++|.....+
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSGKAAE 410 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcHHHHH
Confidence 4588999999987754 23456888999999998766665544332 367899999765543
No 226
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.65 E-value=0.75 Score=58.60 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~--~Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|...+..+ ... |+.-+.|+|||..|-.|+..+...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 444444444443333 244 788999999999888888777643
No 227
>PRK08181 transposase; Validated
Probab=90.57 E-value=2.1 Score=47.74 Aligned_cols=54 Identities=19% Similarity=0.033 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
+-+.|..++.++-.....+.+.+|.-++|+|||-.+.++...+...+ .+++++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~~ 141 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG--WRVLFTR 141 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC--Cceeeee
Confidence 44567777654422233577889999999999998888877665432 4555554
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.01 E-value=2.3 Score=49.78 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=66.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc----ccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhh
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~----sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~ 492 (1060)
..|+-++|.|||.++..++..+... .++++++.-- ..+.||..-..... ..+..
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lg--ipv~v------------------ 301 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIG--FEVIA------------------ 301 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcC--CcEEe------------------
Confidence 3577789999998887777666432 3567776652 24566664332211 11111
Q ss_pred CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHH---HHHHHcCCC-CceEEeecCCCCC
Q 001524 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR---AKSLLEIPS-AHRIIISGTPIQN 568 (1060)
Q Consensus 493 ~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~---~kal~~l~a-~~RilLTGTPiqN 568 (1060)
..++..+......+. ....+|+||||-+=+..+..... .+.+..... ...+.|+||--.+
T Consensus 302 -----~~d~~~L~~aL~~lk-----------~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 302 -----VRDEAAMTRALTYFK-----------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -----cCCHHHHHHHHHHHH-----------hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 112333332222111 01236899999887654332222 222222222 2235588887666
Q ss_pred CHHHHHHHHhhhCC
Q 001524 569 NLKELWALFNFCCP 582 (1060)
Q Consensus 569 ~l~EL~sLl~fl~p 582 (1060)
.+.++...++.+.+
T Consensus 366 d~~~i~~~F~~~~i 379 (436)
T PRK11889 366 DMIEIITNFKDIHI 379 (436)
T ss_pred HHHHHHHHhcCCCC
Confidence 76776666665433
No 229
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.94 E-value=0.98 Score=50.84 Aligned_cols=28 Identities=18% Similarity=0.018 Sum_probs=21.4
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.+.++.-++|+|||..|.+++..+...+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3567888999999998887777665543
No 230
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.92 E-value=1.9 Score=46.29 Aligned_cols=40 Identities=23% Similarity=0.021 Sum_probs=25.3
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 400 QREGLRWLWSL--HCQGKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 400 Q~egV~wl~~~--~~~~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
+..++..|... ...+...+|.-+.|+|||..+.++.....
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444432 22334567888999999998877766554
No 231
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.90 E-value=1.6 Score=52.47 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=33.8
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
..+|.-+.|+|||..+-++...+....+..+++.+....++..+...+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 467889999999998888887776655455666665565555554444
No 232
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.88 E-value=2.2 Score=49.81 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s 454 (1060)
+.-.+|.-++|.|||.++..++..+.......++.+|+.-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34446778999999998888777654333234666666544
No 233
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.76 E-value=2 Score=50.92 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=30.4
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 459 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW 459 (1060)
..+|.-+.|+|||..+-++...+....+..+++.+....++..+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 34788899999999888888777655444566666544444333
No 234
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.55 E-value=0.81 Score=55.52 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=81.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHH----HHHhcCCCcEEEEcccccchhhHHHHHhhh
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKE----LTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E----~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~ 492 (1060)
+.--|=--|||...+++|+.++..-..-++..|+- +++..--.+| +.+|+|...+....+
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~--------------- 270 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD--------------- 270 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC---------------
Confidence 33347789999999999988887666668899998 6655554555 467888776533222
Q ss_pred CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCC-------
Q 001524 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP------- 565 (1060)
Q Consensus 493 ~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTP------- 565 (1060)
+++..+....+... .... -..........|+++++||||-|+-..=...--+...+..+.|.+|-|-
T Consensus 271 --~tI~~s~pg~Kst~-~fas---c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~~sTS 344 (668)
T PHA03372 271 --NVISIDHRGAKSTA-LFAS---CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTNDATC 344 (668)
T ss_pred --cEEEEecCCCccee-eehh---hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCCccch
Confidence 12222211110000 0000 0001123455699999999999975433333333344555556676542
Q ss_pred ----CCCCHHHHHHHHhhhCCCC
Q 001524 566 ----IQNNLKELWALFNFCCPEL 584 (1060)
Q Consensus 566 ----iqN~l~EL~sLl~fl~p~~ 584 (1060)
+.|...++.+.+.|+|++.
T Consensus 345 fL~~Lk~~~~~~lnVVsYvC~~H 367 (668)
T PHA03372 345 FLTKLNNSPFDMLNVVSYVCEEH 367 (668)
T ss_pred HHHhccCchhhheeeEEEEchhh
Confidence 2233445555555666654
No 235
>CHL00181 cbbX CbbX; Provisional
Probab=89.38 E-value=1.1 Score=50.45 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=26.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccC--CCceEEEeCcccHHH
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPKTLLSH 458 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~--~k~vLIV~P~sLl~q 458 (1060)
.+|.-++|+|||..|-+++..+...+. .++++.|....++..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~ 105 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQ 105 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHH
Confidence 578889999999988888776654332 234444443444433
No 236
>PRK14974 cell division protein FtsY; Provisional
Probab=89.10 E-value=2.8 Score=48.34 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=30.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc----ccHHHHHHHHHHh
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTAV 466 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~----sLl~qW~~E~~k~ 466 (1060)
.++.-++|.|||.++..++..+... ..++++++.- ..+.||.......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 3567799999998777777655432 2467666653 3456776555443
No 237
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.07 E-value=3.5 Score=51.10 Aligned_cols=42 Identities=21% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...++.|...+..++ .-|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444444333342 34788899999999998888888653
No 238
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.98 E-value=1.1 Score=55.05 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=81.6
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHH----HHhcCCCcEEEEcccccchhhHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKEL----TAVGLSAKIREYFGTCVKTRQYELQY 489 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~----~k~~~~~~v~~~~g~~~~~~~~~~~~ 489 (1060)
+-.+..-+=--|||..+.++++.++.......+++++| ..+...-.+|+ ++|.+...+....|. .- .+
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I--~i---- 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI--SF---- 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE--EE----
Confidence 55677778889999987777776666555679999999 66666555554 456665444333331 00 00
Q ss_pred hhhCC---CEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCC-
Q 001524 490 VLQDK---GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP- 565 (1060)
Q Consensus 490 ~~~~~---~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTP- 565 (1060)
.+..+ .+.+.|- + . ........++++||||||-|+...-....-+..-.....|.+|-|-
T Consensus 328 ~f~nG~kstI~FaSa---r-n------------tNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 328 SFPDGSRSTIVFASS---H-N------------TNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred EecCCCccEEEEEec---c-C------------CCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCC
Confidence 00111 2222210 1 0 1112345699999999999975221111122222345556676552
Q ss_pred ----------CCCCHHHHHHHHhhhCCCCC
Q 001524 566 ----------IQNNLKELWALFNFCCPELL 585 (1060)
Q Consensus 566 ----------iqN~l~EL~sLl~fl~p~~l 585 (1060)
+.|...+|.+.+.|+|++..
T Consensus 392 ~~~sTSFL~nLk~a~~~lLNVVsYvCdeH~ 421 (738)
T PHA03368 392 GKASTSFLYNLKGAADELLNVVTYICDEHM 421 (738)
T ss_pred CccchHHHHhhcCchhhheeeEEEEChhhh
Confidence 33444555555666666543
No 239
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.80 E-value=1.9 Score=51.89 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=34.8
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
.+.+|.-++|+|||-.+-++...+....+..+++.|.+..++......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 3467899999999988777777665555556777777766665555544
No 240
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.80 E-value=2.4 Score=51.62 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCCCe---EEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 400 QREGLRWLWSLHCQGKGG---ILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~Gg---ILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
|...+..+......++-+ |+.-+.|+|||..|.+++..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 555566665554444433 8888999999999988888776433
No 241
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.14 E-value=2.9 Score=48.85 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGK--G-GILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--G-gILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+..+......++ . .|+.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 6666666655544442 3 378899999999988888877753
No 242
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.90 E-value=2.6 Score=51.29 Aligned_cols=42 Identities=21% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......++ ..|+.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5556665555444443 56889999999999988888777553
No 243
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.80 E-value=2.2 Score=47.68 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 399 HQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 399 hQ~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
+|...|+.|......+ ..-++--+.|+|||-++.+|...++.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 5888888887755541 22355669999999999999998865
No 244
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=87.65 E-value=3.5 Score=53.92 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=71.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEE
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIR 473 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~ 473 (1060)
..|-+-|+++|..+.. ...-.+|.-..|+|||.+.-++...+ .. ...+++.++|......-..+-.
T Consensus 345 ~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~-e~-~G~~V~~~ApTGkAA~~L~e~t--------- 410 (988)
T PRK13889 345 LVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAW-EA-AGYEVRGAALSGIAAENLEGGS--------- 410 (988)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHH-HH-cCCeEEEecCcHHHHHHHhhcc---------
Confidence 4588999999987764 12246788899999998644433333 22 2357888999765443222210
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcC
Q 001524 474 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553 (1060)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l 553 (1060)
|. ....+..+.. .+.. . ......-++||||||-.+... ...+.+...
T Consensus 411 ---Gi----~a~TI~sll~--------------~~~~--~--------~~~l~~~~vlIVDEASMv~~~--~m~~LL~~a 457 (988)
T PRK13889 411 ---GI----ASRTIASLEH--------------GWGQ--G--------RDLLTSRDVLVIDEAGMVGTR--QLERVLSHA 457 (988)
T ss_pred ---Cc----chhhHHHHHh--------------hhcc--c--------ccccccCcEEEEECcccCCHH--HHHHHHHhh
Confidence 00 0011111100 0000 0 001223579999999998432 344444433
Q ss_pred -CCCceEEeecCCCCC
Q 001524 554 -PSAHRIIISGTPIQN 568 (1060)
Q Consensus 554 -~a~~RilLTGTPiqN 568 (1060)
....+++|.|=|-|-
T Consensus 458 ~~~garvVLVGD~~QL 473 (988)
T PRK13889 458 ADAGAKVVLVGDPQQL 473 (988)
T ss_pred hhCCCEEEEECCHHHc
Confidence 567899999988654
No 245
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.55 E-value=2.9 Score=51.03 Aligned_cols=94 Identities=15% Similarity=0.264 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 829 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ 829 (1060)
.|+|....+.++......|.++||.+..+.....+...|... |..+..++|+++..+|.+...+...+.. . +++.|.
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~-~-IVVGTr 84 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI-L-VVIGTR 84 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC-C-EEECCh
Confidence 689999998888888888999999999999888888888764 7889999999999999998888777753 3 455554
Q ss_pred CcccccCcccCCEEEEeC
Q 001524 830 VGGLGLTLTKADRVIVVD 847 (1060)
Q Consensus 830 agg~GLNLt~A~~VIi~D 847 (1060)
.. .=+-+.....||+-+
T Consensus 85 sa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 85 SA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred HH-HcCcccCCCEEEEEC
Confidence 32 123456666677654
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.47 E-value=4.2 Score=44.41 Aligned_cols=40 Identities=18% Similarity=-0.032 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 400 QREGLRWLWSLH--CQGKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 400 Q~egV~wl~~~~--~~~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
+..++.++.... ..+...+|.-+.|+|||-.+.+++..+.
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555544332 1234568888999999987666665543
No 247
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.32 E-value=3.8 Score=47.29 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 395 MLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.+||+|....+.+...+..++ .-|+.-+.|+||+..|.+|+..++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 378999888888888776654 336788999999999999999887653
No 248
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.28 E-value=3.1 Score=45.53 Aligned_cols=71 Identities=23% Similarity=0.174 Sum_probs=38.3
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCC-CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH------HHHHHHH
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL------SHWIKEL 463 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~~~-GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl------~qW~~E~ 463 (1060)
.+....-+|+.-.+.-.+. ...+. -+.+.-+.|+|||+.+=+++..+- ....++|+.|+..+ .-|..++
T Consensus 28 ~~~~~~a~h~e~l~~l~~~-i~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 28 GLDYWAADHNEALLMLHAA-IADGQGILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhhhHHHHHHHHH-HhcCCceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHh
Confidence 3444445565443332222 22333 334667999999997664444332 22345567776554 4477776
Q ss_pred HH
Q 001524 464 TA 465 (1060)
Q Consensus 464 ~k 465 (1060)
..
T Consensus 104 ~~ 105 (269)
T COG3267 104 ES 105 (269)
T ss_pred cc
Confidence 53
No 249
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.20 E-value=3.7 Score=52.03 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=74.5
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecC
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 829 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ 829 (1060)
.|+|....+.++......|.++||.+..+..+..+...|... |..+..++|+++..+|.+...+...+.. . ++++|.
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~-~-IVVgTr 249 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA-K-VVIGAR 249 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC-C-EEEecc
Confidence 588998888888877778899999999999988888888764 8899999999999999998888887763 3 555555
Q ss_pred CcccccCcccCCEEEEeCC
Q 001524 830 VGGLGLTLTKADRVIVVDP 848 (1060)
Q Consensus 830 agg~GLNLt~A~~VIi~D~ 848 (1060)
.. .=+.+.....||+-+-
T Consensus 250 sa-l~~p~~~l~liVvDEe 267 (679)
T PRK05580 250 SA-LFLPFKNLGLIIVDEE 267 (679)
T ss_pred HH-hcccccCCCEEEEECC
Confidence 32 2245666777776553
No 250
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.14 E-value=3.4 Score=51.61 Aligned_cols=42 Identities=17% Similarity=-0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|...+..++ .-|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 5555666655555543 33788899999999999988888654
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=87.00 E-value=2.5 Score=52.68 Aligned_cols=42 Identities=24% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK--G-GILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--G-gILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|...+..++ . .|+.-+.|+|||..|..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4555555555444443 2 4788899999999988888777653
No 252
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.93 E-value=4.2 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...++.+......++ ..|+.-+.|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4444555544444442 4489999999999988888877754
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.77 E-value=4.4 Score=44.91 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=40.6
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
+..+.|.++.-++|.|||..++|+...+.. ...+++++.=+.++.+++..+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHHHHh
Confidence 346788899999999999999999988872 2467777776777777766554
No 254
>PF13173 AAA_14: AAA domain
Probab=86.51 E-value=4.5 Score=39.51 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=25.4
Q ss_pred ccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCC
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPi 566 (1060)
-.+|++||+|++.+.....-..+. -....++++||.-.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccch
Confidence 367999999999764433333332 22456899999864
No 255
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.42 E-value=4 Score=49.85 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCC--e-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGKG--G-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~G--g-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|......++- . |+.-+.|+|||..|.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 55555555554444432 2 788899999999888888887653
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.36 E-value=7.4 Score=46.67 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 456 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl 456 (1060)
..+|.-+.|+|||..+-++...+....+..+++.+....++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~ 172 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 46788899999999888888777665555567776654433
No 257
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=86.30 E-value=4.4 Score=46.48 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 396 LFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
+||+|...-+-+...+..++ .-|+.-+.|+||+..|.+++..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 58888888877877776654 335778999999999999999887654
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.24 E-value=5.9 Score=48.38 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~--~Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......+ ..+ |+.-+.|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 555566665554443 233 788899999999888888877653
No 259
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=86.10 E-value=1.6 Score=48.93 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeCccc-HHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKTL-LSHWIKELTA 465 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P~sL-l~qW~~E~~k 465 (1060)
|-+-|..+|.+ . .+..++-...|+|||.+++.-+..++... ...++|+|++... ...-...+..
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 45679988877 2 35667777899999999888777776654 4468999999544 3334444443
No 260
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=86.05 E-value=4.3 Score=41.64 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCCchHHHHHHHHHHHhhccCCCc
Q 001524 400 QREGLRWLWSLHCQGK--G-GILGDDMGLGKTMQICGFLAGLFHSRLIKR 446 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--G-gILaDemGLGKTlqaiali~~l~~~~~~k~ 446 (1060)
|.+.+..+......++ . -|+..+.|.||+..|.+++..++.......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~ 51 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED 51 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC
Confidence 5666666666665553 3 377889999999999999998887665433
No 261
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.96 E-value=6.3 Score=44.80 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=25.2
Q ss_pred ccEEEEcCCCcCCCcch--HHHHHHHcCCCCceEEeecCCCC
Q 001524 528 WDYMILDEGHLIKNPST--QRAKSLLEIPSAHRIIISGTPIQ 567 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~s--k~~kal~~l~a~~RilLTGTPiq 567 (1060)
.++||+||+|.+..... .+...+.......++++|++...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 47899999999833222 12223444566678888887543
No 262
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.94 E-value=3.3 Score=48.05 Aligned_cols=44 Identities=18% Similarity=-0.009 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHhhc---CCCCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 397 FPHQREGLRWLWSLHC---QGKGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~---~~~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|..|.+.+...+.... ...+.+|.-+.|+|||..+-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6777777655554322 2245678889999999988877776643
No 263
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.91 E-value=5.6 Score=45.50 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 395 MLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.+||+|....+.+...+..++ .-++..+.|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478999888888877766554 447888999999999999998887654
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.74 E-value=6.2 Score=39.25 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=25.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
+|.-+.|+|||..+..++..... ..++++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEEC
Confidence 56778999999988888776644 3467777766
No 265
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.67 E-value=4.6 Score=50.59 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...++.|...+..++ .-|+.-+.|+|||..|.+++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5555555555444443 44888899999999888888776543
No 266
>PRK08727 hypothetical protein; Validated
Probab=85.51 E-value=3.8 Score=44.66 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=22.9
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
..+|.-+.|+|||-.+.+++..+...+ .+++++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~ 75 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYL 75 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEE
Confidence 368888999999987777776654432 344444
No 267
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=85.33 E-value=9.7 Score=46.11 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=97.9
Q ss_pred ccccCCCChHHHHHHHHHHHhhcCCC------CeEEEcCCCCchHHHHHHHHHH--HhhccCCCceEEEeCcc-cHHHHH
Q 001524 390 GKIGNMLFPHQREGLRWLWSLHCQGK------GGILGDDMGLGKTMQICGFLAG--LFHSRLIKRALVVAPKT-LLSHWI 460 (1060)
Q Consensus 390 ~~l~~~L~phQ~egV~wl~~~~~~~~------GgILaDemGLGKTlqaiali~~--l~~~~~~k~vLIV~P~s-Ll~qW~ 460 (1060)
+.....|-|||+..+.-++-.+.++. -+++..+=|=|||..+.+++.+ ++.+.....++|++|.- ...+=.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 34556799999999988876555443 4588899999999876655544 34555566889999843 333333
Q ss_pred HHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCC
Q 001524 461 KELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540 (1060)
Q Consensus 461 ~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iK 540 (1060)
.+++....... ......-.+...+. +++.......+.+.. +....+.....++|+||-|...
T Consensus 136 ~~ar~mv~~~~------------~l~~~~~~q~~s~~-i~~~~~~s~ik~~aa-----~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 136 NPARDMVKRDD------------DLRDLCNVQTHSRT-ITHRKTDSTIKAVAA-----DPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHHHHHHHhCc------------chhhhhccccceeE-EEecccceeeeeecc-----CCCcccCCCcceEEEehhhhhc
Confidence 33332211111 00000011122222 233222222222211 1233456778999999999998
Q ss_pred CcchHHHHHHH-cCCC---CceEEe--ecCCCCCCHHHHHHHHhhhCCCCCCChHHH
Q 001524 541 NPSTQRAKSLL-EIPS---AHRIII--SGTPIQNNLKELWALFNFCCPELLGDNKWF 591 (1060)
Q Consensus 541 N~~sk~~kal~-~l~a---~~RilL--TGTPiqN~l~EL~sLl~fl~p~~l~~~~~F 591 (1060)
+.. ..+..+. .+.+ ...|.+ +|-|...-..+.+....-+..+...+...|
T Consensus 198 ~~~-~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f 253 (546)
T COG4626 198 KQE-DMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPHFF 253 (546)
T ss_pred CHH-HHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCCcceE
Confidence 876 3433333 3322 222333 355555556666666655555544444433
No 268
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.24 E-value=4.4 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=19.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhh
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~ 440 (1060)
-|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 488999999999988888777643
No 269
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=85.18 E-value=5.9 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=20.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~ 441 (1060)
-|+.-+.|+|||..+..|+..+...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4788899999999998888887653
No 270
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.18 E-value=3.3 Score=51.48 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...++.+...+..++ .-|+.-+.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 5555555555554443 45778899999999999888887654
No 271
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.13 E-value=6.3 Score=48.84 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|......++ .+ |+.-+.|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 6666666666555543 33 788899999999999888877653
No 272
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.76 E-value=5.1 Score=47.27 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.3
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
.-|+.-+.|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34688899999999999988877654
No 273
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.64 E-value=2 Score=54.10 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=67.3
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEe
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlS 827 (1060)
.|+|.++.++++.+....|..+||-..-......+...|+.+ |.++..+|++++..+|.....+..+|.. +|++-+
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~-~vVIGt 303 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA-RVVIGT 303 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc-eEEEEe
Confidence 699999999999999999999999999998888888887776 8999999999999999999999999984 444443
No 274
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.43 E-value=11 Score=42.74 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 400 QREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
|.+.+..+......+ ...+|.-+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344554444433333 3468889999999988877776664
No 275
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.39 E-value=6.9 Score=47.40 Aligned_cols=41 Identities=22% Similarity=0.050 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...++.+...+..+ ..-|+.-+.|+|||..|..++..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 444555554444444 35678889999999988877766654
No 276
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.94 E-value=9 Score=43.91 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=23.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.+.-+.|.|||.++..++..+... .++++++.-
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 355599999998887777666433 367777764
No 277
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.77 E-value=5.1 Score=50.83 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred ccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEE
Q 001524 749 DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 824 (1060)
Q Consensus 749 ~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~----~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~ 824 (1060)
+..|+|.....-.+......|.+++|.+..+..+..+...+. ..|+++..++|+++..+|.+++....++. ..|+
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~Iv 368 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADIV 368 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCEE
Confidence 446899776554444445678899999999987776655554 45799999999999999999999998876 3445
Q ss_pred EEecCCcccccCcccCCEEEEeCCC
Q 001524 825 LLTSQVGGLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 825 LlST~agg~GLNLt~A~~VIi~D~~ 849 (1060)
+.|.......+.+.....||+=+.+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 4444445556677777777764433
No 278
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.77 E-value=7.2 Score=48.32 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=32.9
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
..+|.-+.|+|||-.+.+++..+.......+++.+.-..++..+...+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH
Confidence 357888999999998888777765544445666666555555554443
No 279
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.75 E-value=7.9 Score=45.29 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCC
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK 494 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 494 (1060)
+-..|.-+||.|||.+..=+++.+......+++=||+--+-----.++++.|+--..+ .
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v---------------------p 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV---------------------P 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC---------------------c
Confidence 3345778999999976555666555445556776666533322222333332211111 1
Q ss_pred CEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCC-CcCCCcc-hHHHHHHHcC--CCCceEEeecCCCCCCH
Q 001524 495 GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEG-HLIKNPS-TQRAKSLLEI--PSAHRIIISGTPIQNNL 570 (1060)
Q Consensus 495 ~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEA-H~iKN~~-sk~~kal~~l--~a~~RilLTGTPiqN~l 570 (1060)
=.++.++.-+......+. ..|+|.+|=+ +.-++.. ..-.+++... ....-+.||+|-=.+.+
T Consensus 263 ~~vv~~~~el~~ai~~l~--------------~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 263 LEVVYSPKELAEAIEALR--------------DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred eEEecCHHHHHHHHHHhh--------------cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 123334443333322221 2477888844 3333321 1122222222 23445789999988899
Q ss_pred HHHHHHHhhhCCC
Q 001524 571 KELWALFNFCCPE 583 (1060)
Q Consensus 571 ~EL~sLl~fl~p~ 583 (1060)
++++..+..+...
T Consensus 329 kei~~~f~~~~i~ 341 (407)
T COG1419 329 KEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHhccCCcc
Confidence 9999999887664
No 280
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.73 E-value=13 Score=45.28 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=24.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
..|.-++|.|||.++..++..+......+++.+|.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34666899999998877776655444345666665
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=83.64 E-value=8.4 Score=46.06 Aligned_cols=35 Identities=20% Similarity=0.029 Sum_probs=25.3
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
-.+++-.+|.|||.++..++..+... ..++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 34678899999999888887766543 346666665
No 282
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=83.63 E-value=8.7 Score=50.77 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~ 457 (1060)
..|-+-|+++|..+. ...+-++|.-.-|+|||.+.-++...+... ..+++.++|..-..
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkAA 438 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKAA 438 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHHH
Confidence 468999999998764 224456788899999998666555443322 35788888965443
No 283
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.34 E-value=8 Score=44.03 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=74.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEE
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVL 497 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~Vv 497 (1060)
++.---|.|||.+..=++..+... .+++|+.+=-+-..--.+++..|+-...+.++.+........ .
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa-V---------- 209 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA-V---------- 209 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-H----------
Confidence 456688999997655555555433 368888887666666666777776555555554332211111 1
Q ss_pred EeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcch------HHHHHHHcC--CCCceEEe--ecCCCC
Q 001524 498 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------QRAKSLLEI--PSAHRIII--SGTPIQ 567 (1060)
Q Consensus 498 ItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------k~~kal~~l--~a~~RilL--TGTPiq 567 (1060)
-|+.+... ....+|+|++|=|-|+-|... ++.+.+... .++|.++| =||--|
T Consensus 210 --afDAi~~A----------------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 210 --AFDAIQAA----------------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred --HHHHHHHH----------------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 23333321 134479999999999977542 333333332 34565554 588888
Q ss_pred CCHHHHH
Q 001524 568 NNLKELW 574 (1060)
Q Consensus 568 N~l~EL~ 574 (1060)
|.+...-
T Consensus 272 nal~QAk 278 (340)
T COG0552 272 NALSQAK 278 (340)
T ss_pred hHHHHHH
Confidence 8776553
No 284
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.32 E-value=5.9 Score=46.29 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
|..++..+...+..++ .-|+.-+.|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5666666666655553 456788999999999999999998654
No 285
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.22 E-value=8.1 Score=44.69 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHhhcCC-CCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 396 LFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~-~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
+||+|...-+.+.....+- ..-++.-+.|.|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6888888777777653222 3445778999999999999998887654
No 286
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=83.02 E-value=2.3 Score=48.29 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHhhcC-CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 396 LFPHQREGLRWLWSLHCQ-GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~-~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.-|-|..-+..+.+..-. |.| +-|+|||+.+.+.....+..+..+++|.-=|
T Consensus 129 kt~~Q~~y~eai~~~di~fGiG-----pAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIG-----PAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeec-----ccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 456788877777663211 222 8899999998888888777777777776666
No 287
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.84 E-value=5.2 Score=49.83 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|...+..++ .. |+.-+.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666666666555553 23 788899999999988888877653
No 288
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.14 E-value=10 Score=44.90 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......+ ..-|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445555555544444 234678899999999999888877653
No 289
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.96 E-value=8.3 Score=47.38 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...++.+......+ ..-|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445555554443333 23478899999999988888877754
No 290
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.71 E-value=8.9 Score=47.12 Aligned_cols=41 Identities=22% Similarity=0.032 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGKG---GILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~G---gILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+..+......++. -|+.-+.|+|||..|..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44555555554444433 468889999999998888877764
No 291
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.29 E-value=6 Score=47.53 Aligned_cols=41 Identities=22% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~ 457 (1060)
.+.+|.-+.|+|||-.+-+++..+... ..+++.+....+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHHHHHH
Confidence 346788899999999888777766543 35666665444443
No 292
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=80.51 E-value=9.3 Score=44.00 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCCC--Ce-EEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 399 HQREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 399 hQ~egV~wl~~~~~~~~--Gg-ILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.|...+..+......++ .+ |+.-+.|.|||..|..++..+....
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 45556666665554442 34 7888999999999999888876543
No 293
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.48 E-value=1.2 Score=46.10 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=26.5
Q ss_pred hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCC
Q 001524 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540 (1060)
Q Consensus 490 ~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iK 540 (1060)
.....+|||++|..+.......... .....-.+||+||||+|-
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~--------~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLF--------GIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHC--------T--CCCEEEEETTGGGCG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhc--------cccccCcEEEEecccchH
Confidence 3456899999999887543221100 011234689999999983
No 294
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.45 E-value=4.2 Score=42.09 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=37.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
.++.-++|+|||..++.++...... ..++++++.-....+..+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCHHHHHHHHHHcC
Confidence 4678899999999999888776543 478999998766777766666553
No 295
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=80.42 E-value=1.5 Score=45.65 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=53.3
Q ss_pred EEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEE
Q 001524 419 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVL 497 (1060)
Q Consensus 419 LaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~Vv 497 (1060)
|-.+=|-|||-. ++++...+......+++|.+| ..-+..-.+.+.+-. ....+....................|-
T Consensus 2 ltA~RGRGKSa~-lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~i~ 77 (177)
T PF05127_consen 2 LTADRGRGKSAA-LGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGL---KALGYKEEKKKRIGQIIKLRFNKQRIE 77 (177)
T ss_dssp EEE-TTSSHHHH-HHHCCCCSSS-----EEEE-SS--S-HHHHHCC-----------------------------CCC--
T ss_pred ccCCCCCCHHHH-HHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhc---cccccccccccccccccccccccceEE
Confidence 455679999953 333332222222357999999 333433322221111 000010000000000000011244566
Q ss_pred EeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHH
Q 001524 498 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALF 577 (1060)
Q Consensus 498 ItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl 577 (1060)
+..++.+... ....|++|||||=.| +-..+.+. +....|+++|.|-.
T Consensus 78 f~~Pd~l~~~-----------------~~~~DlliVDEAAaI--p~p~L~~l---l~~~~~vv~stTi~----------- 124 (177)
T PF05127_consen 78 FVAPDELLAE-----------------KPQADLLIVDEAAAI--PLPLLKQL---LRRFPRVVFSTTIH----------- 124 (177)
T ss_dssp B--HHHHCCT---------------------SCEEECTGGGS---HHHHHHH---HCCSSEEEEEEEBS-----------
T ss_pred EECCHHHHhC-----------------cCCCCEEEEechhcC--CHHHHHHH---HhhCCEEEEEeecc-----------
Confidence 6666655432 123689999999777 22222222 35667889988852
Q ss_pred hhhCCCCCCChHHHHHHhhc
Q 001524 578 NFCCPELLGDNKWFKEKYEL 597 (1060)
Q Consensus 578 ~fl~p~~l~~~~~F~~~f~~ 597 (1060)
+.=|+...|.-+|..
T Consensus 125 -----GYEGtGRgF~lkf~~ 139 (177)
T PF05127_consen 125 -----GYEGTGRGFSLKFLK 139 (177)
T ss_dssp -----STTBB-HHHHHHHHC
T ss_pred -----ccccCCceeeeehhh
Confidence 455666666655543
No 296
>PRK14873 primosome assembly protein PriA; Provisional
Probab=80.37 E-value=6.2 Score=49.69 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc-C-CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEec
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-G-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~-g-i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST 828 (1060)
.|+|.+..++++.+....|..+||...-......+...|..+ | ..++.+|++++..+|.+...+...|... +++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~--IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR--VVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc--EEEEc
Confidence 489999999999999999999999999999989888888865 4 6799999999999999999999888643 55555
Q ss_pred CC
Q 001524 829 QV 830 (1060)
Q Consensus 829 ~a 830 (1060)
++
T Consensus 248 RS 249 (665)
T PRK14873 248 RS 249 (665)
T ss_pred ce
Confidence 54
No 297
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=80.29 E-value=6.5 Score=42.72 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=29.8
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.|.-.+|+-++|.|||..++.++....... ..++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeC
Confidence 344558899999999999888887765442 468899884
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=79.81 E-value=8.9 Score=42.51 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
.+.-.+|+-++|.|||..++.++..+.... ..+++++.--.-..++...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEcccCHHHHHHHH
Confidence 355668999999999998888877664331 36788887633334443333
No 299
>PRK06893 DNA replication initiation factor; Validated
Probab=79.80 E-value=13 Score=40.36 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=19.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~ 441 (1060)
.+|.-+.|+|||-.+.+++..+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4788999999998777777665443
No 300
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=79.62 E-value=8.2 Score=48.57 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred ccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEE
Q 001524 749 DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 824 (1060)
Q Consensus 749 ~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~----~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~ 824 (1060)
+..|+|.....-.+......|.+++|-+..+..+..+...+. ..|+++..++|+++..+|..++....++. ..|+
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~Ii 342 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHLV 342 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCEE
Confidence 346889765544333444578899999999888777665554 34899999999999999999999988876 3445
Q ss_pred EEecCCcccccCcccCCEEEEeCCC
Q 001524 825 LLTSQVGGLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 825 LlST~agg~GLNLt~A~~VIi~D~~ 849 (1060)
+.|....-..+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 5544445556677777777764433
No 301
>PRK04132 replication factor C small subunit; Provisional
Probab=79.56 E-value=5.6 Score=51.11 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=28.4
Q ss_pred ccEEEEcCCCcCCCcch-HHHHHHHcCCCCceEEeecCCCCCCHHHH
Q 001524 528 WDYMILDEGHLIKNPST-QRAKSLLEIPSAHRIIISGTPIQNNLKEL 573 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~s-k~~kal~~l~a~~RilLTGTPiqN~l~EL 573 (1060)
+.+|||||||++..... .+.+.+...+...+++|+.++...-+.-|
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI 677 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH
Confidence 67999999999943211 12223333356778889888765444333
No 302
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=79.34 E-value=8.7 Score=43.49 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccC
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRL 443 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~ 443 (1060)
-++..+.|.|||..|.+++..++....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 578889999999999999988876543
No 303
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.32 E-value=14 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=20.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~ 441 (1060)
-|+.-+.|+|||..|-.++..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3678899999999888887776543
No 304
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=79.14 E-value=7.6 Score=43.79 Aligned_cols=40 Identities=30% Similarity=0.294 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhhcCC-----CCeEEEcCCCCchHHHHHHHHH
Q 001524 397 FPHQREGLRWLWSLHCQG-----KGGILGDDMGLGKTMQICGFLA 436 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~~~-----~GgILaDemGLGKTlqaiali~ 436 (1060)
||.=.+++..|-.++... .+-+|.-++|.|||..+=-|..
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH
Confidence 566666677666654432 3668899999999985544554
No 305
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.14 E-value=8.3 Score=48.06 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCCCe---EEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGKGG---ILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~Gg---ILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+.+|...+..++-+ |+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 566666666555544322 78899999999998888877753
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=79.09 E-value=8.2 Score=48.75 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=39.3
Q ss_pred cccCCHHHHHHHHcCCCCCCCchhhHHHHHhhhc------CCCCCChHHHHHHHHhhhcCccccccCcccccc
Q 001524 907 IRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHG------DQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 973 (1060)
Q Consensus 907 ~r~fs~~eL~eLf~~~~~~~~~s~tq~~~~~~~~------~~~~~d~~~~~~~~~~~~~~i~g~~~h~~l~~~ 973 (1060)
..+++..+.-.++-+...- .+.++....+++. ..-..|..+...+.||+...|...++.-.||+-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~ 631 (725)
T PRK07133 561 KDYLSVEEVINLIMLAIKF--HSQNQVEYKKLVQNWNKNLPLFEYDVEFMEIAHFLKDLKILASSDNFILFSS 631 (725)
T ss_pred hhhhhHHHHHHHHHHHHhh--cCccchhHHHHHHHHHhccchhhccHHHHHHHHHHhhhheeeecCceEEEec
Confidence 3467788877777542110 1112222222211 112457778888899999999888888888876
No 307
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.90 E-value=2 Score=44.80 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=31.5
Q ss_pred cCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 412 CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 412 ~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
..+.|.+|.-++|+|||..|.+++..+... ..+++++.-. .+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~~----~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITAS----DLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEHH----HHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeecC----ceecccc
Confidence 346788889999999999999998877663 3567776544 3445554
No 308
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=78.15 E-value=14 Score=39.87 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=24.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 453 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~ 453 (1060)
.+|.-+.|+|||-..-|++..+....+..+++.+...
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 4788899999998766666666555555555555443
No 309
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.09 E-value=12 Score=45.11 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=29.9
Q ss_pred ccEEEEcCCCcCCCcchHHHHHHH---cC--CCCceEEeecCCCCCCHHHHHHHHhhh
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLL---EI--PSAHRIIISGTPIQNNLKELWALFNFC 580 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk~~kal~---~l--~a~~RilLTGTPiqN~l~EL~sLl~fl 580 (1060)
+++++||.+=+..+.. .....+. .. +....+.|++|.-++.+.++...++.+
T Consensus 335 ~d~VLIDTaGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~ 391 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGP 391 (484)
T ss_pred CCeEEeCCCCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccC
Confidence 5789999976543322 2222222 22 233457799998777766666555543
No 310
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.02 E-value=14 Score=43.85 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=32.5
Q ss_pred ccEEEEcCCCcCCCcchHHHHHHHcC-----CCCceEEeecCCCCCCHHHHHHHHhhhCC
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLLEI-----PSAHRIIISGTPIQNNLKELWALFNFCCP 582 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk~~kal~~l-----~a~~RilLTGTPiqN~l~EL~sLl~fl~p 582 (1060)
+++|++|.+=+..+ .......+..+ +....++|+||--.+.+.+++..+..+.+
T Consensus 270 ~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 270 KHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 57899998744322 22233333333 22344779999877778777776665544
No 311
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=77.39 E-value=14 Score=50.59 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=43.2
Q ss_pred cccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh--ccCCCceEEEeCcccH
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH--SRLIKRALVVAPKTLL 456 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~--~~~~k~vLIV~P~sLl 456 (1060)
.+...|-+-|++++..++. ...+-.+|.-..|+|||.+.-+++..+.. ......++.++|..-.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 4445799999999987765 22355678889999999876555544322 2223467888995543
No 312
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=77.25 E-value=4.7 Score=45.79 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 405 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 405 ~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
.+|+.....+++.+++-+||+|||..+-+++..+....+..++++|
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti 168 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII 168 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE
Confidence 4455555567788999999999998777766555443334455444
No 313
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=76.87 E-value=12 Score=48.80 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcC--CCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 400 QREGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 400 Q~egV~wl~~~~~~--~~GgILaDemGLGKTlqaiali~~l 438 (1060)
|..-+++++....+ ..+.||.-+.|.|||..+=.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 33347777664433 3578999999999998776666554
No 314
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.68 E-value=12 Score=46.47 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+..+......+ ..-|+.-+.|+|||..|..|+..+..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 334444454444443 23467889999999999988887764
No 315
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=76.49 E-value=18 Score=44.94 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
|...+..+......+ +.-|+.-+.|+|||..|.+++..+....
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 444455555444343 2346888999999999998888876433
No 316
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.26 E-value=12 Score=40.46 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
.+-|++-++|.|||..+.+++..++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 46799999999999988888877754
No 317
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.23 E-value=15 Score=47.18 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHhhc--CCC-CeE-EEcCCCCchHHHHHHHHHHHh
Q 001524 397 FPHQREGLRWLWSLHC--QGK-GGI-LGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 397 ~phQ~egV~wl~~~~~--~~~-GgI-LaDemGLGKTlqaiali~~l~ 439 (1060)
|.-|...|...+.-.. .+. ++| |.-.+|+|||.++-.++..+.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667777655554322 222 343 799999999999888876664
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.10 E-value=3.1 Score=51.76 Aligned_cols=6 Identities=50% Similarity=0.612 Sum_probs=2.7
Q ss_pred cccchh
Q 001524 134 EIRDIL 139 (1060)
Q Consensus 134 ~~~~~~ 139 (1060)
||.|++
T Consensus 1286 EIwD~R 1291 (1516)
T KOG1832|consen 1286 EIWDMR 1291 (1516)
T ss_pred hhhhhH
Confidence 444443
No 319
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.83 E-value=7.8 Score=42.64 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhh---cCC-CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 398 PHQREGLRWLWSLH---CQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 398 phQ~egV~wl~~~~---~~~-~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
+.|..++..+.... ..+ .+.+|.-++|+|||..+.+++..+...+ .+++++. +..|...+.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT----VADIMSAMK 143 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE----HHHHHHHHH
Confidence 45666666555422 222 3568888999999999999888876543 4566553 455666554
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.41 E-value=9 Score=43.09 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=25.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.+++-++|.|||.++..++..+.......++.+|.-
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 457779999999988887777654322356666664
No 321
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=75.28 E-value=27 Score=40.99 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
.+.+|.-+.|+|||..+-.++..+....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 5678899999999998888877665443
No 322
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.28 E-value=7 Score=40.63 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=35.3
Q ss_pred CCCccEEEEcCCCcCCCc----chHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhh
Q 001524 525 DAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 580 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN~----~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl 580 (1060)
...||+||+||.-.+-+. ...+...+..-+..--++|||.-. +.+|..+.+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 356899999998765432 245666666666667899999854 45555544443
No 323
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.89 E-value=5.8 Score=45.47 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
+.+.|..- |+.....+++.|++-+||+|||..+-+++..+....+..++++|
T Consensus 129 ~~~~~~~~---L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 129 MTEAQASV---IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 44556544 44444456777899999999998777766665433333454443
No 324
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=74.74 E-value=9.2 Score=49.88 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCC--CCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 402 EGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 402 egV~wl~~~~~~~--~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
.-+++++..++++ .+.||.-+.|.|||..+-+++..+.
T Consensus 180 ~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 180 EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3477777654433 5778889999999988777766553
No 325
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=74.57 E-value=12 Score=47.20 Aligned_cols=137 Identities=19% Similarity=0.136 Sum_probs=71.9
Q ss_pred HHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCC--ceEEE------eCcccHHHHHHHHHHhcCCCcEEEEccc
Q 001524 407 LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK--RALVV------APKTLLSHWIKELTAVGLSAKIREYFGT 478 (1060)
Q Consensus 407 l~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k--~vLIV------~P~sLl~qW~~E~~k~~~~~~v~~~~g~ 478 (1060)
|+.....+.-+|+--++|+|||.|...+|..-+-....+ .-.+| +|.+++....+|=..-. -...+.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~-----g~tvgy 460 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV-----GETCGY 460 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh-----cccccc
Confidence 334445577788889999999999888776554433221 22333 33444444433322110 011111
Q ss_pred ccchhhHHHHHhhh-CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCc
Q 001524 479 CVKTRQYELQYVLQ-DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 557 (1060)
Q Consensus 479 ~~~~~~~~~~~~~~-~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~ 557 (1060)
..... ..... ..-++.+|-+.+.+-... .......+|+||.|..--..--+.+.++.+...+
T Consensus 461 ~vRf~----Sa~prpyg~i~fctvgvllr~~e~-------------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 461 NVRFD----SATPRPYGSIMFCTVGVLLRMMEN-------------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTY 523 (1282)
T ss_pred ccccc----ccccccccceeeeccchhhhhhhh-------------cccccccccchhhhhhccchHHHHHHHHhhhccc
Confidence 11100 00111 234667777766543322 1234578999999986443334455555555544
Q ss_pred e----EEeecCC
Q 001524 558 R----IIISGTP 565 (1060)
Q Consensus 558 R----ilLTGTP 565 (1060)
+ +++++|=
T Consensus 524 ~dl~v~lmsatI 535 (1282)
T KOG0921|consen 524 RDLRVVLMSATI 535 (1282)
T ss_pred hhhhhhhhhccc
Confidence 4 6788885
No 326
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=74.42 E-value=4.7 Score=49.51 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=37.6
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG 437 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~ 437 (1060)
..++|+.|.+-.+-+++....|+=||+-.|||+|||+..|+....
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHH
Confidence 345788999988889998999999999999999999986654433
No 327
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=74.34 E-value=19 Score=41.44 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCe-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 396 LFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
+||+|...-+-+.....+-..+ |+.-+.|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 5888888777676654433344 578899999999999988887654
No 328
>PRK05642 DNA replication initiation factor; Validated
Probab=74.09 E-value=13 Score=40.51 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=23.6
Q ss_pred ccEEEEcCCCcCCCcch---HHHHHHHcCC-CCceEEeecC
Q 001524 528 WDYMILDEGHLIKNPST---QRAKSLLEIP-SAHRIIISGT 564 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~s---k~~kal~~l~-a~~RilLTGT 564 (1060)
.+++|||+.|.+.+... .++..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999999865322 2344443333 3567888887
No 329
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=73.88 E-value=22 Score=49.41 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=43.9
Q ss_pred ccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh--ccCCCceEEEeCcccH
Q 001524 390 GKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH--SRLIKRALVVAPKTLL 456 (1060)
Q Consensus 390 ~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~--~~~~k~vLIV~P~sLl 456 (1060)
..+...|-+-|++++..++. ...+-.+|.-..|+|||.+.-+++..+.. .....+++.++|..-.
T Consensus 962 ~~~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 962 GELMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred HHhcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 34455789999999988775 22356678889999999876555554432 1223467888995543
No 330
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=73.74 E-value=4.6 Score=43.46 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=26.1
Q ss_pred CccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCC
Q 001524 527 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569 (1060)
Q Consensus 527 ~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~ 569 (1060)
..+++||||++.+-.. ...- +..+.....+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g--~l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YLLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChH--HHHH-HHhhccCcceEEEECchhcc
Confidence 3689999999998432 2222 44444445677889998753
No 331
>PRK04195 replication factor C large subunit; Provisional
Probab=73.70 E-value=13 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l 438 (1060)
.+..||.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4577899999999998777766544
No 332
>PRK11054 helD DNA helicase IV; Provisional
Probab=73.61 E-value=6.7 Score=49.67 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=48.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccC--CCceEEEeCcccHHHHHHH-HHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPKTLLSHWIKE-LTA 465 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~--~k~vLIV~P~sLl~qW~~E-~~k 465 (1060)
..|-+-|+++|..- ....++....|+|||.++++-++++..... ...+|+++...-..+..++ +..
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 45889999998522 234566667999999999998888776543 3589999997766666554 443
No 333
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=73.46 E-value=7.2 Score=43.32 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 398 phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
|+.+..+..+......+...+|..++|+|||..|-++...+ ..+++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEe
Confidence 55666666666666678888999999999999887766532 34555553
No 334
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=73.34 E-value=41 Score=42.16 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHH
Q 001524 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKEL 463 (1060)
Q Consensus 399 hQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~ 463 (1060)
+=..-|..+...+.+.- .++.-+=|.|||..+..++..+.... ..+++|.+| .+....-.+.+
T Consensus 173 ~~~~~id~~~~~fkq~~-tV~taPRqrGKS~iVgi~l~~La~f~-Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 173 RTLREIDRIFDEYGKCY-TAATVPRRCGKTTIMAIILAAMISFL-EIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred hhHHHHHHHHHHHhhcc-eEEEeccCCCcHHHHHHHHHHHHHhc-CCeEEEECCChhhHHHHHHHH
Confidence 33344555555555544 44555789999987765555554322 368999999 55554444443
No 335
>PRK09165 replicative DNA helicase; Provisional
Probab=73.08 E-value=20 Score=43.70 Aligned_cols=59 Identities=8% Similarity=-0.137 Sum_probs=38.5
Q ss_pred HHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-------------CCCceEEEeCcccHHHHHHHH
Q 001524 405 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------------LIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 405 ~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~-------------~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
.-+..-+..|.=.|||..+|+|||..++.++....... ...++|+++.---..++...+
T Consensus 208 D~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~ 279 (497)
T PRK09165 208 DSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI 279 (497)
T ss_pred hhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH
Confidence 33433333444568999999999998888776654321 246888988755556655554
No 336
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.81 E-value=23 Score=43.11 Aligned_cols=41 Identities=22% Similarity=0.042 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--Gg-ILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+..+......++ .+ |+.-+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666655554443 33 67899999999888887777653
No 337
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=72.69 E-value=8.3 Score=41.55 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcC
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGL 468 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~ 468 (1060)
.-.+++-++|+|||+.++.+++...... ..++++|+-..-..++.+.+..++.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-HHHHHHHHHTTTS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCHHHHHHHHHHcCC
Confidence 3447888999999999999887765551 2578999876666777777776543
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.35 E-value=47 Score=37.16 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC----cccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP----KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQY 489 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P----~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~ 489 (1060)
+....+.-+.|+|||..+..++..+.. ...++.+|.- ...+.||........ +..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~~----~~~~~~------------ 136 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIG----FEVIAV------------ 136 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHhhhcC----ceEEec------------
Confidence 345567778999999876666555432 2345666655 245677765444321 111111
Q ss_pred hhhCCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCcchHH---HHHHHcCCC-CceEEeecCC
Q 001524 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR---AKSLLEIPS-AHRIIISGTP 565 (1060)
Q Consensus 490 ~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~---~kal~~l~a-~~RilLTGTP 565 (1060)
.+...+......+. ....+++||+|-+=+.-+....+ .+.+..... ...+.|+||-
T Consensus 137 ---------~~~~~l~~~l~~l~-----------~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ---------RDEAAMTRALTYFK-----------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ---------CCHHHHHHHHHHHH-----------hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 11122221111111 01236899999887753322211 122222222 2345689988
Q ss_pred CCCCHHHHHHHHhhhCC
Q 001524 566 IQNNLKELWALFNFCCP 582 (1060)
Q Consensus 566 iqN~l~EL~sLl~fl~p 582 (1060)
-.+...++...++-+.+
T Consensus 197 ~~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 197 KSKDMIEIITNFKDIHI 213 (270)
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 77777777666654433
No 339
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.33 E-value=6.1 Score=46.64 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 465 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k 465 (1060)
.+|-+|+-+.|.|||+.+.+++... .-.+.-|.|.+|...|.-|-++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh-----cceEeeccHHHhhhhccChHHH
Confidence 3577899999999999888877654 2355668889999999776654
No 340
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.71 E-value=15 Score=35.21 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=24.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHH
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~q 458 (1060)
+|.-+.|+|||..+-.++..+ ..+++.+....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc-----ccccccccccccccc
Confidence 566799999998777666654 245566666555533
No 341
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=71.64 E-value=21 Score=37.82 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred ccEEEEcCCCcCCCcchHHHHHHHcCCC--CceEEeecC
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLLEIPS--AHRIIISGT 564 (1060)
Q Consensus 528 wd~VIlDEAH~iKN~~sk~~kal~~l~a--~~RilLTGT 564 (1060)
.++|.+||||-+.. .....+..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999999844 45555555543 456777664
No 342
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=71.43 E-value=12 Score=45.46 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhcc----CCCceEEEeCcccHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSR----LIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~----~~k~vLIV~P~sLl~qW~~ 461 (1060)
+-.|+--..|+|||..|+-=+++++... ..+++||+.|..+......
T Consensus 227 ~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 227 KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 3345667999999988876555554322 2467999999887665543
No 343
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.39 E-value=22 Score=44.23 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~--Gg-ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......++ .+ |+.-+.|+|||..+..++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4455555555444442 33 688899999999998888877643
No 344
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=71.20 E-value=12 Score=45.30 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhh-----cCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cC-CCceEEEeC
Q 001524 398 PHQREGLRWLWSLH-----CQGKGGILGDDMGLGKTMQICGFLAGLFHS-RL-IKRALVVAP 452 (1060)
Q Consensus 398 phQ~egV~wl~~~~-----~~~~GgILaDemGLGKTlqaiali~~l~~~-~~-~k~vLIV~P 452 (1060)
|+|+..+..++... ...+.++|.-+=|-|||..+.+++.+.+.. +. ...++++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~ 62 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAAN 62 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeC
Confidence 78888777665321 112456788899999998877765544332 22 235667777
No 345
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=71.16 E-value=18 Score=44.73 Aligned_cols=42 Identities=24% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|......++ .-|+.-+.|+|||..|-+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 4444444444333333 24788999999999998888877643
No 346
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=71.16 E-value=17 Score=47.67 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=70.5
Q ss_pred cccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEE
Q 001524 750 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 825 (1060)
Q Consensus 750 ~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~----~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~L 825 (1060)
..++|....+..+-.....|.+++|.+..+..+..+...+.. .++++..++|.++..++.+++..+..+. ..|++
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-~dIVI 559 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK-IDILI 559 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC-ceEEE
Confidence 358888766554444445678999999999988887776654 3678899999999999999999998875 34455
Q ss_pred EecCCcccccCcccCCEEEEe
Q 001524 826 LTSQVGGLGLTLTKADRVIVV 846 (1060)
Q Consensus 826 lST~agg~GLNLt~A~~VIi~ 846 (1060)
.|.......+.+.....||+=
T Consensus 560 GTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred chHHHhhCCCCcccCCEEEee
Confidence 444455556677777777763
No 347
>PRK08760 replicative DNA helicase; Provisional
Probab=70.99 E-value=25 Score=42.67 Aligned_cols=59 Identities=15% Similarity=-0.059 Sum_probs=41.2
Q ss_pred HHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 407 LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 407 l~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
+..-+..|.=.|||..+|+|||..++.++...... ...++++++.-.-..||...+...
T Consensus 222 ~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 222 MTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHHHHHHHHh
Confidence 43333444555899999999999888888765422 235899998866677887766543
No 348
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.89 E-value=56 Score=34.59 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCCccEEEEcCCCcCCCc----chHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHh
Q 001524 525 DAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN~----~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~ 578 (1060)
...|++||+||.=.+-+. ...+...+.+-+..--|+|||--....+.|+..++.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVT 170 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVT 170 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchhe
Confidence 456899999998776442 345666666666667899999854444444433333
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.47 E-value=18 Score=43.01 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=17.7
Q ss_pred CCeEEEcCCCCchHHHHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAG 437 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~ 437 (1060)
...||.-+.|+|||..|-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36688899999999877666543
No 350
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.43 E-value=20 Score=46.67 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
..+.||.-+.|.|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35779999999999988777766554
No 351
>PRK06835 DNA replication protein DnaC; Validated
Probab=70.19 E-value=9.6 Score=43.88 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHh----hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCccc
Q 001524 395 MLFPHQREGLRWLWSL----HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~----~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sL 455 (1060)
..+.++..++.++... ...+.+.+|.-++|+|||..+.+++..+...+ ..++.+.-..+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~l 222 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADEL 222 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHHH
Confidence 3455666666644432 22356778888999999999999888876543 34554443333
No 352
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=69.83 E-value=20 Score=41.13 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=18.9
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l 438 (1060)
...++.-+.|+|||..+.+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 467889999999998777666544
No 353
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=69.64 E-value=8.2 Score=43.35 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=65.6
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccH-----HHHHHHHHH--hcCC--CcEEEEcccccchhhH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLL-----SHWIKELTA--VGLS--AKIREYFGTCVKTRQY 485 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl-----~qW~~E~~k--~~~~--~~v~~~~g~~~~~~~~ 485 (1060)
=|++--+||+||+--.=.+|..-+-......+++|+| +..+ .-|..++.. +.++ ..+....++
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t------- 161 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT------- 161 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-------
Confidence 3567789999999633233333333344467899999 5554 459888865 2111 111111111
Q ss_pred HHHHhhhCCCEEEeeHHHHHhccccccCCC--cccCcCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCC
Q 001524 486 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSS--FISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 554 (1060)
Q Consensus 486 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~--~~~~~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~ 554 (1060)
-..+.+-+||+-+......--... .+. .......-+||+|||=.-......+++....++
T Consensus 162 ------~~P~Fv~msy~e~t~~~NldI~~p~NiF~---~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlP 223 (369)
T PF02456_consen 162 ------FRPKFVEMSYDEATSPENLDITNPNNIFA---QAAKKGPIAIIMDECMEKLGSHKSISKFFHALP 223 (369)
T ss_pred ------ccccceeecHhhhCCccccCCCCchHHHH---HHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCc
Confidence 023567788887765432110000 000 001234578999998665555555666665553
No 354
>PRK10689 transcription-repair coupling factor; Provisional
Probab=69.49 E-value=63 Score=43.57 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHHhhcCCCccE
Q 001524 748 HDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI 823 (1060)
Q Consensus 748 ~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~----~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V 823 (1060)
.+..++|....+..+......|.+++|-+..+..+..+...+.. .++++..++|..+.+++.+++.....+. ..|
T Consensus 628 a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~-~dI 706 (1147)
T PRK10689 628 GDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK-IDI 706 (1147)
T ss_pred cCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC-CCE
Confidence 34468998765544444445788999999999988887777664 3577888999999999999999888765 345
Q ss_pred EEEecCCcccccCcccCCEEEE
Q 001524 824 FLLTSQVGGLGLTLTKADRVIV 845 (1060)
Q Consensus 824 ~LlST~agg~GLNLt~A~~VIi 845 (1060)
++.|.......+.+.....||+
T Consensus 707 VVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 707 LIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEECHHHHhCCCCHhhCCEEEE
Confidence 5555444444566666666665
No 355
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.32 E-value=18 Score=45.27 Aligned_cols=42 Identities=19% Similarity=0.080 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......+ ..-|+.-+.|.|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 666666666655444 234688899999999999888877653
No 356
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=69.17 E-value=9.2 Score=43.85 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
+-+.|.+. |+.....+++.+++-+||+|||-.+-+++..+....+..++++|-.
T Consensus 133 ~~~~~~~~---L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd 186 (319)
T PRK13894 133 MTAAQREA---IIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIED 186 (319)
T ss_pred CCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcC
Confidence 34555544 4444445678899999999999776666665533333445555444
No 357
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=68.65 E-value=31 Score=39.73 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..+......++ .-|+.-+.|+|||..+-+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555544443343 34788999999999888888777543
No 358
>PRK08939 primosomal protein DnaI; Reviewed
Probab=68.46 E-value=14 Score=42.14 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~q 458 (1060)
++|-+|.-++|+|||..+.|++..+...+ .+++++.-..++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHFPEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEHHHHHHH
Confidence 45677888999999999999888876432 45555544444433
No 359
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=68.14 E-value=50 Score=47.06 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHH
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~q 458 (1060)
..|-+-|+++|.-++. ...+-.||--..|+|||.++-+++..+... ..++++++|..-..+
T Consensus 428 ~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~--G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQ--GYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 4688899999987765 223456777899999997666555444332 368999999655433
No 360
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.01 E-value=16 Score=47.75 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHhhcC--CCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 403 GLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 403 gV~wl~~~~~~--~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
-++.++..+++ ..+.||.-++|.|||..+-+++..+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 36677664433 35778999999999988877776553
No 361
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=67.23 E-value=7.5 Score=47.35 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHhh--------cCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLH--------CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 465 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~--------~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k 465 (1060)
..+...+++.|.+... ...+|.||.-+.|+|||+.|-++.... ..+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHhccccchHHH
Confidence 4567777777766532 234578899999999999877766532 2455555555999999888765
No 362
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=25 Score=39.94 Aligned_cols=76 Identities=21% Similarity=0.179 Sum_probs=44.6
Q ss_pred ccccCCCChHHHHHHHHHHHhhcC----CCCeE-EEcCCCCchHHHHHHHHHHHhh---ccCCCceEEEeC-cccHHHHH
Q 001524 390 GKIGNMLFPHQREGLRWLWSLHCQ----GKGGI-LGDDMGLGKTMQICGFLAGLFH---SRLIKRALVVAP-KTLLSHWI 460 (1060)
Q Consensus 390 ~~l~~~L~phQ~egV~wl~~~~~~----~~GgI-LaDemGLGKTlqaiali~~l~~---~~~~k~vLIV~P-~sLl~qW~ 460 (1060)
..++..|+.|-..++.+--..... ...-| |--|+|+|||-.|=|++..+-- ....+..||=.- -+|...|.
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF 227 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH
Confidence 345666777766655443322111 12334 4559999999887777766532 122345566555 77888887
Q ss_pred HHHHH
Q 001524 461 KELTA 465 (1060)
Q Consensus 461 ~E~~k 465 (1060)
.|-.|
T Consensus 228 sESgK 232 (423)
T KOG0744|consen 228 SESGK 232 (423)
T ss_pred hhhhh
Confidence 76543
No 363
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.71 E-value=28 Score=44.37 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=27.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc----cHHHHHHHH
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT----LLSHWIKEL 463 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s----Ll~qW~~E~ 463 (1060)
.|.-++|.|||.++.-++..+......+++.+|+--. .+.||..-.
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a 238 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYG 238 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHH
Confidence 4777999999987666555543333334666665422 345665433
No 364
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=65.76 E-value=11 Score=44.60 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=28.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhcc-CCCceEEEeC--cccHHHHHHHH
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAP--KTLLSHWIKEL 463 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~-~~k~vLIV~P--~sLl~qW~~E~ 463 (1060)
++.-.-|+|||..++..+....... ...++||+.| .++-..-..++
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l 53 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDI 53 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHH
Confidence 5666889999998665444333332 4578888888 33444433443
No 365
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=65.14 E-value=37 Score=48.30 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=40.5
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhh--ccCCCceEEEeCcccH
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH--SRLIKRALVVAPKTLL 456 (1060)
Q Consensus 393 ~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~--~~~~k~vLIV~P~sLl 456 (1060)
...|-+-|+.++..++. ...+-.+|--..|+|||.+..+++..+.. .....+++.++|..-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 35689999999988765 22345567789999999877444333221 1123567888896443
No 366
>PRK06904 replicative DNA helicase; Validated
Probab=65.00 E-value=62 Score=39.26 Aligned_cols=60 Identities=13% Similarity=-0.031 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
+..+..-+..|.=.|||.-+|+|||.-++.++...... ...++++++.-.-..++...+-
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~~Rll 270 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIMMRML 270 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHH
Confidence 33344434445556899999999999887777655322 2468999988666677766543
No 367
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=64.83 E-value=62 Score=38.64 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=24.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.++-..|.|||.++.-++..+... ..++++|+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 467799999998888777766433 357777776
No 368
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.76 E-value=22 Score=41.76 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=31.5
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc----ccHHHHHHHHHH
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTA 465 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~----sLl~qW~~E~~k 465 (1060)
-.+++-+.|.|||.++..++..+... ..++.+|+-- ..+.||..-...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~ 259 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADK 259 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhc
Confidence 33577799999999888777665443 2567666642 236788664443
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=64.52 E-value=30 Score=38.73 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=24.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
++.-+.|.|||.++.-++..+... .+++++|.-
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~ 108 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAG 108 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeC
Confidence 456799999999888877666433 367777774
No 370
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=63.98 E-value=26 Score=41.00 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=15.4
Q ss_pred CCeEEEcCCCCchHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGF 434 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaial 434 (1060)
...||.-++|+|||-.|-.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 46799999999999654433
No 371
>PRK05973 replicative DNA helicase; Provisional
Probab=63.92 E-value=17 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=36.2
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
+..|.-.+|+-.+|+|||..++.++...... ..++++++--.--.+-...+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHHc
Confidence 3344556889999999999999888766543 46888888643334444444443
No 372
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=63.83 E-value=53 Score=39.25 Aligned_cols=50 Identities=12% Similarity=-0.071 Sum_probs=33.7
Q ss_pred cCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHH
Q 001524 412 CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 462 (1060)
Q Consensus 412 ~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E 462 (1060)
..|.=.+|+..+|.|||..++.++...... ...++++++.-.-..+....
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHHHHH
Confidence 334445899999999999888887765432 23688888874444444333
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=63.82 E-value=27 Score=41.73 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=30.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc----ccHHHHHHHH
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKEL 463 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~----sLl~qW~~E~ 463 (1060)
.+++-..|.|||.++.-++..+... ..+++++|+=- ....||..-.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a 152 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLG 152 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHH
Confidence 3577799999999888888776554 23566666642 3345664433
No 374
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=63.74 E-value=54 Score=34.12 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.0
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
.-|+.-+.|.|||..+..++..+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34678899999999888888877653
No 375
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=63.50 E-value=13 Score=47.24 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-c-CCCceEEEeC-cccHHHHHHHHHHh
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-R-LIKRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~-~~k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
|-|-|+++|.+. .+.+++....|+|||.+.+.-++++... + ...++|+|+. ......-...+.+.
T Consensus 3 Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 3 LNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 778899988642 3456777789999999988888888754 2 3457899999 44444444445443
No 376
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=63.38 E-value=32 Score=39.32 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=17.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
|+.-+-|+|||..++..+.......+..+.+|++|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~ 35 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIAS 35 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 34567899999985554443333333334555556
No 377
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=63.19 E-value=32 Score=41.49 Aligned_cols=42 Identities=19% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+.++......++ .-|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5666777766655543 34678899999999999888887653
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=63.00 E-value=11 Score=42.00 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 405 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 405 ~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
.+|......+++.+++-+||+|||-++-+++..+... ..++++|-
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iE 162 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIE 162 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEec
Confidence 3444444445667888899999998877776554333 24555544
No 379
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.81 E-value=44 Score=39.75 Aligned_cols=55 Identities=5% Similarity=0.078 Sum_probs=33.0
Q ss_pred CccEEEEcCCCcCCCcchHHHHHHHc----C----CCCceEEeecCCCCCCHHHHHHHHhhhCC
Q 001524 527 IWDYMILDEGHLIKNPSTQRAKSLLE----I----PSAHRIIISGTPIQNNLKELWALFNFCCP 582 (1060)
Q Consensus 527 ~wd~VIlDEAH~iKN~~sk~~kal~~----l----~a~~RilLTGTPiqN~l~EL~sLl~fl~p 582 (1060)
.+++||||=+-+.-... .....+.. + +....++|+||--++.+.+++..+..+.+
T Consensus 299 ~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 299 GSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred CCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 36899999776552222 22222222 2 22345779999877777777776665544
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=62.71 E-value=30 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.075 Sum_probs=17.7
Q ss_pred CCeEEEcCCCCchHHHHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAG 437 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~ 437 (1060)
...||.-+.|+|||..|-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999876665543
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=62.55 E-value=19 Score=39.25 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
|...+++-++|+|||..++.+++..... ..++|+|+--....+-.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHHHh
Confidence 4455789999999999999888766533 46888888654444544445443
No 382
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=62.41 E-value=15 Score=46.87 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeC-cccHHHHHHHHHHh
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
.|-|-|+++|.+- .+.+++....|+|||.+.+.-++++.... ....+|+|+. ......-...+.+.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4889999988532 34667888999999999888888887643 3457899998 44555555555554
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=62.12 E-value=54 Score=33.55 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=22.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
++.-+.|.|||..+..++..+... ..++++|.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~ 35 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVA 35 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEE
Confidence 567799999999888887766544 24555544
No 384
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=61.79 E-value=25 Score=41.01 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhhc--CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHH
Q 001524 396 LFPHQREGLRWLWSLHC--QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~--~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~ 457 (1060)
|-+-|+.++.+++.... .+...+|.-+-|+|||...=++...+.. ..+.+++++|..+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHH
Confidence 56779999988876553 3455578889999999866666655433 346899999976654
No 385
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=61.52 E-value=18 Score=40.29 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
+.+.|.+.+.++.. ..++..+++-+||+|||.+.-+++..+.
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 56778888777654 1222357889999999988777776653
No 386
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=61.12 E-value=15 Score=43.69 Aligned_cols=39 Identities=26% Similarity=0.090 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHH
Q 001524 423 MGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIK 461 (1060)
Q Consensus 423 mGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~ 461 (1060)
-|+|||+.-+.=++.++..++..+++|-+= ++|..+...
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHH
Confidence 499999865555666677778889999887 555444443
No 387
>PRK08506 replicative DNA helicase; Provisional
Probab=61.04 E-value=55 Score=39.70 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
+..+..-+..|.=.|||..+|.|||..++.++..... ...++++++.---..++...+
T Consensus 182 LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 182 LNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred HHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCcCCHHHHHHHH
Confidence 3334333344455589999999999998888877643 346899998855555555444
No 388
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=60.99 E-value=58 Score=37.26 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 400 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~---GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
|..++..+......++ .-|+.-+.|.||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5566666666655553 447778999999999999999887654
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=60.98 E-value=41 Score=40.96 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=44.9
Q ss_pred HHHHHHHHHh-hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 401 REGLRWLWSL-HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 401 ~egV~wl~~~-~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
..++..++.- +..|.-.++.-++|.|||..++.|++..... ..++|+|+----..|....+..++
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCHHHHHHHHHHcC
Confidence 3444444431 2223445788899999999999998877553 358899988777777777776654
No 390
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=60.88 E-value=18 Score=46.39 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeC-cccHHHHHHHHHHh
Q 001524 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 394 ~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
..|-|-|+++|.+- .+..++....|+|||.+.+.-++++.... ....+|+|+- ......-...+.+.
T Consensus 8 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35889999998532 34567777899999999888888887532 3457899998 44444455555543
No 391
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=60.75 E-value=60 Score=33.33 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCCccEEEEcCCCcCCC----cchHHHHHHHcCCCCceEEeecCCCCCCHHHH
Q 001524 525 DAIWDYMILDEGHLIKN----PSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN----~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL 573 (1060)
...+|+||+||.=..-+ ....+...+.+-+...-++|||--.+..+.|+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 34589999999877633 22456666666666677999997554444443
No 392
>CHL00176 ftsH cell division protein; Validated
Probab=60.73 E-value=30 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAG 437 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~ 437 (1060)
.+|.+|.-++|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999977776543
No 393
>PRK12377 putative replication protein; Provisional
Probab=60.61 E-value=25 Score=38.79 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~ 461 (1060)
.+.+|.-++|+|||-.+.+++..+...+ .+++++.-..++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHHHHHH
Confidence 4567888999999999999888776432 45555544555554433
No 394
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.46 E-value=18 Score=41.86 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=35.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEEEc
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYF 476 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~~~ 476 (1060)
+++-=-|.|||.+|.-+++++...+ .++.+||--+--.--..+++.++...++..|.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC--CceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 4566789999987776666554333 56666776554444445566665555655543
No 395
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=59.98 E-value=22 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
.+.-.++.-++|+|||+-++.|+...... ..|++.|+-...-..-.+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHHHc
Confidence 34555788899999999999999888766 46899998755544444444433
No 396
>PRK06921 hypothetical protein; Provisional
Probab=59.62 E-value=28 Score=38.80 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 456 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl 456 (1060)
+.+.+|.-++|+|||..+.+++..+.... ...++.+....++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~~l~ 158 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVEGF 158 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHHHHH
Confidence 56678888999999999988888776542 2455555544333
No 397
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.36 E-value=56 Score=38.06 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
|...+..+......+ ...|+.-+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555565555554444 3567888999999988887766554
No 398
>PRK08840 replicative DNA helicase; Provisional
Probab=59.35 E-value=80 Score=38.23 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=38.0
Q ss_pred HHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 407 LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 407 l~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
+..-+..|.=.|||.-+|+|||.-++.++...... ...+++++..---..|+...+
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHHHHH
Confidence 33334445556899999999999887777665322 246899998865566665554
No 399
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=59.28 E-value=25 Score=37.86 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=36.9
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
-.+++-++|+|||..++.++...... ..++++++...-..+-.+.+..++
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHcC
Confidence 33678899999999998888765543 478999988666666666665543
No 400
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.84 E-value=1.2e+02 Score=38.04 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
|...+..+......+ ..-|+.-+.|.|||..|..++..+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444444444433333 23478889999999977777766653
No 401
>PRK05748 replicative DNA helicase; Provisional
Probab=58.01 E-value=76 Score=38.17 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 402 EGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 402 egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
.++..+..-+..|.=.+||..+|.|||.-++.++...... ...++++++.---..++...+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHHHH
Confidence 3344444333444556899999999999888888765322 236888888755555555444
No 402
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=57.91 E-value=46 Score=39.35 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=19.0
Q ss_pred cCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 412 CQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 412 ~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
..|..+.+..+.|.|||..+-.++..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 346667788899999997655544443
No 403
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=57.79 E-value=29 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l 438 (1060)
..+.||.-+.|+|||..+-++....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999998777666544
No 404
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=56.81 E-value=74 Score=39.69 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=49.2
Q ss_pred eEEEeccHHHHHHHHHHHhhcCC-------eEEEEECCCCHHHHHHHHHHhhc----CCCccEEEEec--CCcccccCcc
Q 001524 772 VLIFSQTRKMLNLIQESIGSKGY-------KFLRIDGTTKASDRVKIVNDFQE----GDVAPIFLLTS--QVGGLGLTLT 838 (1060)
Q Consensus 772 vLIFsq~~~~ld~L~~~L~~~gi-------~~~ridG~~s~~eR~~iI~~F~~----~~~~~V~LlST--~agg~GLNLt 838 (1060)
|++|-.+-..+..+.+.++..|+ +-+.+-...+ -..+++.|.. +.+ .+|++. .-.++|||+.
T Consensus 632 vV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~G--aiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 632 VVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRG--AILLAVVGGKLSEGINFS 706 (821)
T ss_pred EEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCC--eEEEEEeccccccccccc
Confidence 88888888889999998887654 2222222222 2456666653 332 356553 4556899997
Q ss_pred c--CCEEEEeCCCCC
Q 001524 839 K--ADRVIVVDPAWN 851 (1060)
Q Consensus 839 ~--A~~VIi~D~~WN 851 (1060)
+ +..||.+..|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 6 888888888873
No 405
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.70 E-value=22 Score=41.26 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcC----CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc
Q 001524 399 HQREGLRWLWSLHCQ----GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454 (1060)
Q Consensus 399 hQ~egV~wl~~~~~~----~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s 454 (1060)
..++|+..+..+... |++.+++.++|+|||-.|+++...+ +..-|+..++-.-
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL---G~~~PF~~isgSE 87 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL---GEDVPFVSISGSE 87 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC---TTTS-EEEEEGGG
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh---CCCCCeeEcccce
Confidence 466666666665443 4677899999999998887777655 3334665555443
No 406
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=56.69 E-value=21 Score=45.26 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeC-cccHHHHHHHHHHh
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAP-KTLLSHWIKELTAV 466 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P-~sLl~qW~~E~~k~ 466 (1060)
|-|-|+.+|.+- .+.+++....|+|||.+.+.-+..+.... ....+|+|+. ......-...+.+.
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 678899888542 34667778999999999888888877532 3456788876 55555566656543
No 407
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=56.38 E-value=29 Score=37.40 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 465 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k 465 (1060)
|.-.+++-++|+|||..+..++...... ..++++|+--....+.......
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHH
Confidence 4445788899999999888877655432 3578888764444444444433
No 408
>PHA02542 41 41 helicase; Provisional
Probab=56.31 E-value=56 Score=39.63 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
|.=.|+|..+|.|||..++.++..... ..+++|++.----..|+...+
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~--~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQ--QGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHHH
Confidence 334589999999999999888876653 346888887533334444433
No 409
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=55.75 E-value=33 Score=40.87 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHH
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~ 461 (1060)
+..+..-+..|.=.+|+..+|+|||..++.++..... ....++++++.-.-..++..
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~-~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVAL-REGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHH
Confidence 3334333334455589999999999988888766532 22468999986443444433
No 410
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=55.27 E-value=24 Score=42.18 Aligned_cols=36 Identities=22% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
+..+......+++.||..++|+|||..|-.++..+.
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455555688999999999999998877666553
No 411
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=55.25 E-value=4.7e+02 Score=33.04 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=71.2
Q ss_pred ccccchHHHHHHHHHhhccCCCceEEEeccHH----HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEE
Q 001524 749 DNISCKISFILSLLDKLIPEGHNVLIFSQTRK----MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 824 (1060)
Q Consensus 749 ~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~----~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~ 824 (1060)
+-.|+|.....--.-...+.|-++.+....-- ..+-+..+|...|+.+..+.|+++.++|.++..+..+|... +
T Consensus 291 DVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~--i 368 (677)
T COG1200 291 DVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID--I 368 (677)
T ss_pred CcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC--E
Confidence 34688865444333444567888888887643 45567778888899999999999999999999999999855 5
Q ss_pred EEecCC-cccccCcccCCEEEE
Q 001524 825 LLTSQV-GGLGLTLTKADRVIV 845 (1060)
Q Consensus 825 LlST~a-gg~GLNLt~A~~VIi 845 (1060)
++-|.| .-..+.+...-.||+
T Consensus 369 vVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEEcchhhhcceeecceeEEEE
Confidence 666655 566788877777776
No 412
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=55.12 E-value=31 Score=37.56 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~q 458 (1060)
+.-.+|.-+.|+|||..++.+++.....+ .+++.|+.-....+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~~~ 66 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTTTE 66 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCHHH
Confidence 45567888999999998888888765433 67788876433333
No 413
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=54.78 E-value=44 Score=33.33 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCC
Q 001524 755 ISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830 (1060)
Q Consensus 755 l~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~g----i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~a 830 (1060)
..++..|+.+....|+|++|+|.....+..|-+.|-... ++..+...... ...+|+ |++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~-i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPVL-ITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SEE-EE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeEE-EecCc
Confidence 488999999999999999999999999999999997653 23333211111 112344 44332
Q ss_pred cccccCcccCCEEEEeCCCC
Q 001524 831 GGLGLTLTKADRVIVVDPAW 850 (1060)
Q Consensus 831 gg~GLNLt~A~~VIi~D~~W 850 (1060)
.. -....++.+|++++.+
T Consensus 80 ~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 80 EA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp S------S--SEEEE--SS-
T ss_pred cc--CCCCCCCEEEECCCCC
Confidence 11 2234489999998887
No 414
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.66 E-value=23 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
..||+.....+++.+++-+||+|||-..-+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 35566556667888999999999998665655444
No 415
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=53.59 E-value=32 Score=37.23 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=36.9
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
.-.++.-++|+|||..+..+++..... ..+++++.=..-..+..+.+..+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCC
Confidence 344778899999999999888765443 468888887555566666666654
No 416
>PRK09183 transposase/IS protein; Provisional
Probab=53.37 E-value=19 Score=40.06 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=28.8
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~ 457 (1060)
.+.+.+|.-++|+|||..+.++....... ..+++++....++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~~~~l~~ 143 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTTAADLLL 143 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeHHHHHH
Confidence 36778888999999999888876554332 24666655344433
No 417
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=52.66 E-value=88 Score=35.40 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhhcCCC--CeEEEcCCCCchHHHHHHHHHHHhhcc
Q 001524 396 LFPHQREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHSR 442 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~--GgILaDemGLGKTlqaiali~~l~~~~ 442 (1060)
|...|..++..+......++ .++|... |.||+..|..|+..++...
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 55667777777777665553 4455544 6899999999998887654
No 418
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=52.63 E-value=53 Score=44.41 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred hcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc----CCeEE---EEECCCCHHHHHHHHHHhhcCC
Q 001524 747 QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK----GYKFL---RIDGTTKASDRVKIVNDFQEGD 819 (1060)
Q Consensus 747 ~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~----gi~~~---ridG~~s~~eR~~iI~~F~~~~ 819 (1060)
..+..++|..+++-++..+...|.++||.+..+..+..+...+... |+... .++|+++..+|.+.++.+.++.
T Consensus 99 ~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~ 178 (1171)
T TIGR01054 99 IAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD 178 (1171)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC
Confidence 3445688987666555555556889999999999888877766543 44433 5799999999999999998764
Q ss_pred CccEEEEec
Q 001524 820 VAPIFLLTS 828 (1060)
Q Consensus 820 ~~~V~LlST 828 (1060)
..|++.|+
T Consensus 179 -~dIlV~Tp 186 (1171)
T TIGR01054 179 -FDILITTT 186 (1171)
T ss_pred -CCEEEECH
Confidence 33444444
No 419
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.50 E-value=14 Score=42.68 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=35.5
Q ss_pred hhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 410 LHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 410 ~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
+....+|.+|-.|+|+|||+.|-+++... ..+++=|.=..++..|.-|-.|.
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccchhhHHHHHHH
Confidence 34456889999999999998777766432 23344444466777888776553
No 420
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=52.42 E-value=41 Score=41.03 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 400 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~---~GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|...+..|......+ .+-++.-+=|+|||-.|=.++..+-..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 555555555544444 355788899999998766666666443
No 421
>PHA00012 I assembly protein
Probab=52.31 E-value=34 Score=39.16 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCccc
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sL 455 (1060)
++.--+|.|||+-|++-+...+..+ + .|++-..|
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G---r-~VaTNidL 38 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG---C-IVATNLNL 38 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC---C-EEEeCCcc
Confidence 3555789999999888655554443 2 45555443
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.13 E-value=37 Score=40.14 Aligned_cols=59 Identities=20% Similarity=0.110 Sum_probs=37.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcCCCcEEEEcc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG 477 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~~~~v~~~~g 477 (1060)
.+++-=-|+|||.+|.=++.++.. ..+++|+||--.--.--.++++..+....+..|..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 356667899999988877777766 44677777764444444455555554455555543
No 423
>PRK14701 reverse gyrase; Provisional
Probab=51.99 E-value=65 Score=44.98 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=58.0
Q ss_pred hcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhh------cCCeEEEEECCCCHHHHHHHHHHhhcCCC
Q 001524 747 QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS------KGYKFLRIDGTTKASDRVKIVNDFQEGDV 820 (1060)
Q Consensus 747 ~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~------~gi~~~ridG~~s~~eR~~iI~~F~~~~~ 820 (1060)
..+..++|..+..-+...+...|.++||.+..+..+..+...|.. .++.+..++|+++..++.++++.+..+.
T Consensus 100 ~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~- 178 (1638)
T PRK14701 100 VAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD- 178 (1638)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC-
Confidence 344568888743332222334677999999999988888777765 2567889999999999999999998764
Q ss_pred ccEEEEec
Q 001524 821 APIFLLTS 828 (1060)
Q Consensus 821 ~~V~LlST 828 (1060)
..|++.|+
T Consensus 179 ~dILV~TP 186 (1638)
T PRK14701 179 FDILVTTA 186 (1638)
T ss_pred CCEEEECC
Confidence 34455554
No 424
>PRK06620 hypothetical protein; Validated
Probab=51.64 E-value=90 Score=33.57 Aligned_cols=101 Identities=8% Similarity=0.059 Sum_probs=53.7
Q ss_pred eEEEeC-cccHHHHHHHHHH-hc--CCCcEEEEcccccchhhHHHHHhhhCCCEEEeeHHHHHhccccccCCCcccCcCC
Q 001524 447 ALVVAP-KTLLSHWIKELTA-VG--LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAG 522 (1060)
Q Consensus 447 vLIV~P-~sLl~qW~~E~~k-~~--~~~~v~~~~g~~~~~~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~ 522 (1060)
-.||.| .....+|..++.. |. |......++|..+..+...+..+....+..+++....... +
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~--------~------ 82 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEE--------I------ 82 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchh--------H------
Confidence 378888 5556666666654 43 2123455666655555444444444445555543222110 0
Q ss_pred CCCCCccEEEEcCCCcCCCcchHHHHHHHcC-CCCceEEeecCC
Q 001524 523 DDDAIWDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTP 565 (1060)
Q Consensus 523 ~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l-~a~~RilLTGTP 565 (1060)
....++++|||+|.+. .......+..+ ...+.+++|||-
T Consensus 83 --~~~~d~lliDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 83 --LEKYNAFIIEDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred --HhcCCEEEEeccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 0124789999999651 12233333333 445678899983
No 425
>PRK04328 hypothetical protein; Provisional
Probab=51.20 E-value=38 Score=37.28 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHh
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~ 466 (1060)
|.-.+++-++|+|||..++.|++..... ..++++|+=-.-..+-.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCHHHHHHHHHHc
Confidence 3344678999999999999888775433 35778877533333444444443
No 426
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.03 E-value=16 Score=42.34 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC-cccHHHHHHHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTA 465 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P-~sLl~qW~~E~~k 465 (1060)
+|.+++-+.|+|||+.|=|++... +.+.+=+- .+|...|.-|-+|
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHH
Confidence 588999999999999777766532 45555444 7788899877654
No 427
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=50.68 E-value=81 Score=35.87 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhc
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~ 441 (1060)
|+.-+-|.|||..|.+++..++..
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCC
Confidence 788899999999998888877543
No 428
>PF12846 AAA_10: AAA-like domain
Probab=50.58 E-value=28 Score=38.66 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 459 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW 459 (1060)
+.+++.-.||+|||..+..++..+...+ .+++|+=|..=...|
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPL 44 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHH
Confidence 4678888999999988887776666554 566777565333333
No 429
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=50.38 E-value=36 Score=42.68 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc----CCCceEEEeC-cccHHHHHHHHHH
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----LIKRALVVAP-KTLLSHWIKELTA 465 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~----~~k~vLIV~P-~sLl~qW~~E~~k 465 (1060)
.|-..|+.+.+.+.. .+=.|+.-+.|+|||++++-++..++... ..-|+||+|= .+.+.|...-+..
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 355689999988877 56678999999999999887777765433 3458999998 7788887766653
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=49.89 E-value=90 Score=36.65 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
.-.+|.-++|.|||..++.++..+... .+++|+|.--.-..|......++.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~~qi~~Ra~rlg 133 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLRADRLG 133 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCHHHHHHHHHHcC
Confidence 344788899999999888888766543 368888877544566555454443
No 431
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=49.88 E-value=35 Score=43.75 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc--CCCceEEEeCc
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPK 453 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~--~~k~vLIV~P~ 453 (1060)
.|-|-|+.+|.+. .+..++-...|+|||.+.+.-++++.... ...++|+|+-.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 4889999998632 34567777999999999888888887543 23467888774
No 432
>PRK08006 replicative DNA helicase; Provisional
Probab=49.63 E-value=1.4e+02 Score=36.21 Aligned_cols=58 Identities=10% Similarity=-0.095 Sum_probs=38.7
Q ss_pred HHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 406 WLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 406 wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
.+..-+..|.=.|||.-+|+|||.-++.++...... ..++++++..---..++...+.
T Consensus 216 ~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 216 KKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred HhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHH
Confidence 333334445556899999999999888877665422 2468899888555566655443
No 433
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=49.62 E-value=32 Score=44.40 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCc-ccHHHHHHHHHH
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTA 465 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~-sLl~qW~~E~~k 465 (1060)
...|-|.+++.-- ...+-..++-++|+|||-.+.-++..+++.-+..++|||+-. .-+.+-.+-+.+
T Consensus 738 ~ft~~qveai~sg----~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 738 KFTPTQVEAILSG----MQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred ccCHHHHHHHHhc----CCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHh
Confidence 4456788877432 224556788999999999999999999888888899999984 445554444443
No 434
>PRK05636 replicative DNA helicase; Provisional
Probab=49.57 E-value=77 Score=38.83 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=32.4
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 462 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E 462 (1060)
.|.=.||+..+|.|||.-++.++...... ...++++++.---..|+...
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHHHH
Confidence 34445889999999999888777654322 23688888764444444433
No 435
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=49.34 E-value=74 Score=29.61 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=39.4
Q ss_pred CCceEEEec------cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEe
Q 001524 769 GHNVLIFSQ------TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827 (1060)
Q Consensus 769 g~KvLIFsq------~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlS 827 (1060)
.++|+||+. +-.....+..+|...|++|..++=......|+.+....... ..+.+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP-TIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC-CCCEEEEC
Confidence 468999975 33457788899999999999988766666666665554433 33334443
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=48.63 E-value=42 Score=37.19 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=26.9
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
-.+++-++|+|||..|+.|+...... ..++++++-
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 34678899999999999888765433 468888883
No 437
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.47 E-value=51 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.120 Sum_probs=25.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
.+++-..|.|||.++.-++..+.... ..++++|+=
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~ 136 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVAC 136 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 46888999999998888887764322 346666654
No 438
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=47.98 E-value=31 Score=40.42 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEE
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALV 449 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLI 449 (1060)
++..+++-+||+|||.+.-+++..+....+..+++.
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivt 184 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVT 184 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 345578899999999887777666644333334433
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=47.51 E-value=44 Score=34.64 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhc--------cCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHS--------RLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~--------~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
|.=++++-+.|.|||..++.++..+... ....++|+|..-.-..++.+-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 4446899999999999999888877642 13468899988555556666665543
No 440
>PRK07004 replicative DNA helicase; Provisional
Probab=47.38 E-value=97 Score=37.49 Aligned_cols=52 Identities=12% Similarity=-0.063 Sum_probs=35.7
Q ss_pred hcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 411 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 411 ~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
+..|.=.|||..+|+|||.-++.++...... ...++++++.---..|+...+
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHH
Confidence 3344556899999999999888887655322 246888888755555655444
No 441
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=45.99 E-value=26 Score=40.57 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 405 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 405 ~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
.++......+++.+++-+||+|||..+-+++..+
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 4455555667888999999999998666655443
No 442
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=45.95 E-value=33 Score=41.71 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCC-eEEEcCCCCchHHHHHHHHHHH
Q 001524 395 MLFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~G-gILaDemGLGKTlqaiali~~l 438 (1060)
.+.|.|.+.+.++.. ...| .+++-+||+|||.+..+++..+
T Consensus 225 g~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 225 GMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 357888888888765 2334 3588899999998776666555
No 443
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.83 E-value=3.4e+02 Score=32.85 Aligned_cols=97 Identities=10% Similarity=0.114 Sum_probs=67.3
Q ss_pred cccccchHH-HHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEE
Q 001524 748 HDNISCKIS-FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLL 826 (1060)
Q Consensus 748 ~~~~S~Kl~-~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~Ll 826 (1060)
.+..++|-. +++..+. .+..+||.+..+..+......|...|++...+.|+.+..++..++.....+. ..++++
T Consensus 33 apTGsGKTl~y~lp~l~----~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~-~~il~~ 107 (470)
T TIGR00614 33 MPTGGGKSLCYQLPALC----SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGK-IKLLYV 107 (470)
T ss_pred cCCCCcHhHHHHHHHHH----cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEE
Confidence 344678853 3333332 3457999999999887777788888999999999999999988888886654 556766
Q ss_pred ecCCccccc-------CcccCCEEEEeCCC
Q 001524 827 TSQVGGLGL-------TLTKADRVIVVDPA 849 (1060)
Q Consensus 827 ST~agg~GL-------NLt~A~~VIi~D~~ 849 (1060)
|........ .+.....||+=+.+
T Consensus 108 TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 108 TPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred CHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 664433222 44566777764444
No 444
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=45.45 E-value=28 Score=37.95 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=27.6
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhh----------ccCCCceEEEeC
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFH----------SRLIKRALVVAP 452 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~----------~~~~k~vLIV~P 452 (1060)
=++|+-+.|+|||..++.++..+.. ....+++|+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 4789999999999998888776532 123467888883
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=44.92 E-value=41 Score=35.13 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA 436 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~ 436 (1060)
+-+.|..-+.++.. .+...+++-++|+|||...-+++.
T Consensus 10 ~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 10 FSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 33556655555544 567778999999999976555444
No 446
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=44.86 E-value=28 Score=40.06 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
.|+|.+++-++|+|||-.|+++...+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 35677899999999998888877666
No 447
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=44.71 E-value=47 Score=41.65 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=38.8
Q ss_pred ccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHh
Q 001524 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 385 ~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~ 439 (1060)
...+|..+...+.-| .+++..+......+++.++.-++|+|||..+-+++..+.
T Consensus 9 ~~~~~~~~~~~viG~-~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 9 EIPVPERLIDQVIGQ-EEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred ccCcchhhHhhccCH-HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 455666665555554 456666666666678999999999999988877776554
No 448
>PTZ00293 thymidine kinase; Provisional
Probab=43.81 E-value=30 Score=37.18 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=25.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcc
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~s 454 (1060)
++.-+||+|||...|-.+..+... .++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a--g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS--EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc--CCceEEEEecc
Confidence 567799999997666655544332 36899999953
No 449
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.73 E-value=39 Score=38.67 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
.+.+.|.. +||.....++..+++-+||+|||....+++..+
T Consensus 127 t~~~~~~a---yL~~~ie~~~siii~G~t~sGKTt~lnall~~I 167 (312)
T COG0630 127 TISPEQAA---YLWLAIEARKSIIICGGTASGKTTLLNALLDFI 167 (312)
T ss_pred CCCHHHHH---HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 45555544 466667788999999999999998776666544
No 450
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=43.70 E-value=67 Score=35.28 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=63.9
Q ss_pred eccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCC--ccEEEEecCCcccccCcccCCEEEEeCCCCCch
Q 001524 776 SQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV--APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853 (1060)
Q Consensus 776 sq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~--~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~ 853 (1060)
-.|.+..+.|...+.. ++.+..+.++.+... -.|..++. ..+|+|.-...++||+|.+-....+.-.+-+..
T Consensus 94 ~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~D 167 (239)
T PF10593_consen 94 PSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYD 167 (239)
T ss_pred cCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHH
Confidence 3566677777788777 899999997765433 45555442 367899999999999999988887776666555
Q ss_pred hhhhhhhhh--hhhCCcCcEEEE
Q 001524 854 TDNQSVDRA--YRIGQKKDVVVY 874 (1060)
Q Consensus 854 ~~~QAiGRa--~RiGQ~k~V~Vy 874 (1060)
++.| +||. ||.|=..-|.||
T Consensus 168 TL~Q-mgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 168 TLMQ-MGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred HHHH-HhhcccCCcccccceEEe
Confidence 6555 5886 455533334444
No 451
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=43.64 E-value=32 Score=39.55 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHH
Q 001524 403 GLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA 436 (1060)
Q Consensus 403 gV~wl~~~~~~~~GgILaDemGLGKTlqaiali~ 436 (1060)
+..+||.......+.++|-.||+|||...=+++.
T Consensus 162 ~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~ 195 (355)
T COG4962 162 AAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG 195 (355)
T ss_pred HHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHh
Confidence 3445665555567889999999999975444443
No 452
>PRK07773 replicative DNA helicase; Validated
Probab=43.60 E-value=79 Score=41.59 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 402 EGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 402 egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
.++..+..-+..|.=.|||..+|+|||..++.++...... ...++++++--.-..|....+.
T Consensus 205 ~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql~~R~~ 266 (886)
T PRK07773 205 TELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQLVMRLL 266 (886)
T ss_pred hHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHH
Confidence 3444444333344456899999999999998888766433 2368888887444455544443
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=43.45 E-value=96 Score=37.45 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=36.7
Q ss_pred CeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 416 GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
-.+|+-++|.|||..++.++..+... .+++|.|..-.-..|+.....++.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs~~qi~~ra~rlg 145 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEESLQQIKMRAIRLG 145 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCCHHHHHHHHHHcC
Confidence 34788899999999988888776543 358999998655667665555543
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.39 E-value=37 Score=40.93 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHhhcCCCCeE-EEcCCCCchHHHHHHHHHHHhhc
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGI-LGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgI-LaDemGLGKTlqaiali~~l~~~ 441 (1060)
+.|+|...+.-++. ...|-| +.-+||+|||.+..+++..+...
T Consensus 242 ~~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 46777766655544 345554 55699999999888888776543
No 455
>PRK11823 DNA repair protein RadA; Provisional
Probab=43.36 E-value=1.2e+02 Score=36.62 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 402 EGLRWLWS-LHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 402 egV~wl~~-~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
.++..++. -+..+.-.+|.-++|.|||..++.++...... ..++|.|.--.-..|+.....++.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAERLG 131 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHHcC
Confidence 34455543 12223334688899999999888888766532 468888887555666655555543
No 456
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=43.26 E-value=55 Score=38.12 Aligned_cols=43 Identities=16% Similarity=0.024 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhhc----CCCCeEEEcCCCCchHHHHHHHHHHHhh
Q 001524 398 PHQREGLRWLWSLHC----QGKGGILGDDMGLGKTMQICGFLAGLFH 440 (1060)
Q Consensus 398 phQ~egV~wl~~~~~----~~~GgILaDemGLGKTlqaiali~~l~~ 440 (1060)
.-..+-|.|+..... ..+-.+|+-++|+|||..|-+++..+-.
T Consensus 58 ~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 58 EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345566677765443 2344578899999999988877766633
No 457
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=2.8e+02 Score=32.48 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHhhcC---CCCeEEEcCCCCchHHHHHHHHHHHhhc
Q 001524 396 LFPHQREGLRWLWSLHCQ---GKGGILGDDMGLGKTMQICGFLAGLFHS 441 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~---~~GgILaDemGLGKTlqaiali~~l~~~ 441 (1060)
-|.-|.+.+...+...-. ..+.++--++|+|||.++--++..+...
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 467788887666554332 2468899999999999877777666544
No 458
>PRK06321 replicative DNA helicase; Provisional
Probab=42.51 E-value=1.6e+02 Score=35.82 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHH
Q 001524 404 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 463 (1060)
Q Consensus 404 V~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~ 463 (1060)
+.-+..-+..|.=.|||.-+|+|||.-++.++...... ..+++++++.----.++...+
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHH
Confidence 33344333344445899999999999888876655322 246888988755556665544
No 459
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.41 E-value=30 Score=35.13 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=26.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 418 ILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
|.+-++|.|||..++.++..+.+.+ .++.++=|
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g--~~V~~~kP 34 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG--YSVGYYKP 34 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC--CcEEEEEe
Confidence 4567899999999999999887654 56777755
No 460
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.03 E-value=1.9e+02 Score=37.15 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=22.3
Q ss_pred cEEEEcCCCcCCCcchH--HHHHHHcCCCCceEEe
Q 001524 529 DYMILDEGHLIKNPSTQ--RAKSLLEIPSAHRIII 561 (1060)
Q Consensus 529 d~VIlDEAH~iKN~~sk--~~kal~~l~a~~RilL 561 (1060)
-++|+|--|.|+|+... .-..++..+..-.|++
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 58999999999997643 3344555555555444
No 461
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.87 E-value=88 Score=28.55 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=38.8
Q ss_pred CCCceEEEec------cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEe
Q 001524 768 EGHNVLIFSQ------TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827 (1060)
Q Consensus 768 ~g~KvLIFsq------~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlS 827 (1060)
.+++|+||+. +-.....+.+.|...|++|..++=....+.|..+.+ .......+++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 3468999987 445678889999999999999886555444444443 3333334445444
No 462
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=41.87 E-value=1.3e+02 Score=37.56 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCCe-EEEcCCCCchHHHHHHHHHHH
Q 001524 395 MLFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 395 ~L~phQ~egV~wl~~~~~~~~Gg-ILaDemGLGKTlqaiali~~l 438 (1060)
.+.|.|...+.++.. ...|. |++-+||+|||.+..+++..+
T Consensus 299 g~~~~~~~~l~~~~~---~~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 299 GFEPDQKALFLEAIH---KPQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CCCHHHHHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 356778877776655 23444 578899999998877777655
No 463
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.68 E-value=35 Score=40.25 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 459 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW 459 (1060)
.+|.+|.-+.|+|||..|-+++..+ ..+++.+....++..|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHHhHhh
Confidence 4678899999999999877776543 2345555555555444
No 464
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.48 E-value=32 Score=40.71 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWI 460 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~ 460 (1060)
.++|.+|.-+.|+|||..+-+++..+ ..+++.+.+..++..|.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSEFVQKYL 220 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHHHHHhc
Confidence 35788999999999998776665533 23455565555544443
No 465
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=41.45 E-value=1.2e+02 Score=30.37 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=56.4
Q ss_pred ceEEEeccHHHHHHHHHHHhhcCCeE--EEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccCcccCCEEEEeCC
Q 001524 771 NVLIFSQTRKMLNLIQESIGSKGYKF--LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848 (1060)
Q Consensus 771 KvLIFsq~~~~ld~L~~~L~~~gi~~--~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~ 848 (1060)
.|=++||+-.+...+...+..+|+.+ ..=.|+...-.-.++++.|.+++..+++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 47789999999999999998886655 5556665555677899999999888777544 566
Q ss_pred CCCchhhhhhhhhhhhhCCcCcEEEEEEe
Q 001524 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLM 877 (1060)
Q Consensus 849 ~WNp~~~~QAiGRa~RiGQ~k~V~VyrLv 877 (1060)
--+|..+.++.-|+.| +|+|.+|+-=
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE--
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeCC
Confidence 6688888888888876 4899887543
No 466
>PRK13531 regulatory ATPase RavA; Provisional
Probab=41.36 E-value=35 Score=41.26 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 400 QREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 400 Q~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
|.+.|.-+......+...+|..++|+|||..|-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 455666666666678889999999999999887776654
No 467
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=41.33 E-value=30 Score=39.13 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 459 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW 459 (1060)
..+|++|.-+.|.|||++|=++++.+ .--+|+|+-..++...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALVDKY 206 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhhhhh
Confidence 35799999999999999998888766 2345666656655443
No 468
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=41.32 E-value=24 Score=39.11 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 422 DMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 422 emGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
-=|.|||.+++.++..+... .+++|+|
T Consensus 8 KGGVGKTT~~~nLA~~La~~--g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKL--GKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhC--CCeEEEE
Confidence 55899999999888877654 3677776
No 469
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=41.06 E-value=24 Score=39.26 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 422 DMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 422 emGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
-=|.|||.+++.+.+.+...+ +++|+|
T Consensus 9 KGGVGKTT~~~nLA~~La~~G--~rVLlI 35 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMG--KKVMVV 35 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCC--CcEEEE
Confidence 558999999999888886543 678887
No 470
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=40.69 E-value=1.2e+02 Score=26.01 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred ceEEEec-cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEe
Q 001524 771 NVLIFSQ-TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827 (1060)
Q Consensus 771 KvLIFsq-~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlS 827 (1060)
|+.||+. +-........+|...|++|..++-......++++.+........+++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 3566763 44567788888999999999999888777777766666543245556554
No 471
>PHA00673 acetyltransferase domain containing protein
Probab=40.47 E-value=34 Score=34.92 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=36.3
Q ss_pred CccEEEEcCCCcCCCcchHHHHHHHcC---CCCceEEeecCCCCCCHH
Q 001524 527 IWDYMILDEGHLIKNPSTQRAKSLLEI---PSAHRIIISGTPIQNNLK 571 (1060)
Q Consensus 527 ~wd~VIlDEAH~iKN~~sk~~kal~~l---~a~~RilLTGTPiqN~l~ 571 (1060)
..+-|.+++.|+=++-.+++...+... ..-++|.+||||..|.+.
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 367899999999999888877766554 567889999999887653
No 472
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.46 E-value=1.1e+02 Score=37.14 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=73.0
Q ss_pred ceEEEeccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCc-ccccCcccCCEEEEeCCC
Q 001524 771 NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-GLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 771 KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~ag-g~GLNLt~A~~VIi~D~~ 849 (1060)
-+|||-.+---.-.|..+++..++.|+.|+-=++..+-.++-+-|..+. ..|+|.|-++- =.--.+.++..||+|.||
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr-~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGR-KSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcC-ceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 4788887766667888999999999999988777777778888898887 45677776653 244668899999999999
Q ss_pred CCchhhhhhhhhhhhhC
Q 001524 850 WNPSTDNQSVDRAYRIG 866 (1060)
Q Consensus 850 WNp~~~~QAiGRa~RiG 866 (1060)
-||.-|.--+.=..|.-
T Consensus 633 ~~P~FYsEiinm~~k~~ 649 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTT 649 (698)
T ss_pred CCcHHHHHHHhhhhhhh
Confidence 99987766554444433
No 473
>PRK10824 glutaredoxin-4; Provisional
Probab=40.44 E-value=94 Score=30.15 Aligned_cols=63 Identities=13% Similarity=0.245 Sum_probs=40.3
Q ss_pred CCceEEEec------cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHHhhcCC-CccEEEEecCCcc
Q 001524 769 GHNVLIFSQ------TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGG 832 (1060)
Q Consensus 769 g~KvLIFsq------~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~-~~~V~LlST~agg 832 (1060)
.++|+||+. +-.........|...|+.|..++=......|. .+..+...+ -..||+=..-+||
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 368999987 34567888888888888777666544444444 455554333 3446665555665
No 474
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=40.16 E-value=62 Score=44.14 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhcc-CCCceEEEeCcccHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~-~~k~vLIV~P~sLl~qW~~ 461 (1060)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..+...+ ...++||||=.....++.+
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~ 62 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMK 62 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHH
Confidence 4577988884 3477889999999999998877665544333 2357899998766665543
No 475
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=40.12 E-value=40 Score=37.06 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
..+.+++-..|+|||..++.++..+.+.. ..+.+++|
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEec
Confidence 45788899999999998888887665444 66777778
No 476
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.79 E-value=92 Score=35.89 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCchHHHHHHHHHHHhhccC------------CC-ceEEEeCcccHHHHHHH---HHHhcCCCcEEEEcccccchhhHHH
Q 001524 424 GLGKTMQICGFLAGLFHSRL------------IK-RALVVAPKTLLSHWIKE---LTAVGLSAKIREYFGTCVKTRQYEL 487 (1060)
Q Consensus 424 GLGKTlqaiali~~l~~~~~------------~k-~vLIV~P~sLl~qW~~E---~~k~~~~~~v~~~~g~~~~~~~~~~ 487 (1060)
|+|||=.++.++..+...+. .+ ..++|.|.+....--+| +.+.+| ..+ +.+.. |....
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V--~V~~d---R~~~~ 120 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPV--IVGPD---RVAAA 120 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcE--EEeCc---HHHHH
Confidence 89999999998888765421 11 27888887754444444 344455 333 33332 22222
Q ss_pred HHhhh--CCCEEEeeHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCCcCCCc----chHHHHHHHcCCCCceEEe
Q 001524 488 QYVLQ--DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIII 561 (1060)
Q Consensus 488 ~~~~~--~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~----~sk~~kal~~l~a~~RilL 561 (1060)
..... ..+|+|.=-. |... .-...++.|++|-.+-+.|. ....-.-+..+.....+++
T Consensus 121 ~~~~~~~~~dviilDDG-fQh~---------------~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~ 184 (326)
T PF02606_consen 121 RAALKEFPADVIILDDG-FQHR---------------RLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIV 184 (326)
T ss_pred HHHHHHCCCCEEEEcCC-cccc---------------cccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEE
Confidence 22222 2577766311 1100 01234788999987766652 2222223334444455777
Q ss_pred ecCCCCC
Q 001524 562 SGTPIQN 568 (1060)
Q Consensus 562 TGTPiqN 568 (1060)
|+.+...
T Consensus 185 ~~~~~~~ 191 (326)
T PF02606_consen 185 TGCDASD 191 (326)
T ss_pred cCCCcch
Confidence 8877543
No 477
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.49 E-value=1.2e+02 Score=33.17 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHHHHhhccCCCceEEE-e-CcccHHHHHHHHHH
Q 001524 423 MGLGKTMQICGFLAGLFHSRLIKRALVV-A-PKTLLSHWIKELTA 465 (1060)
Q Consensus 423 mGLGKTlqaiali~~l~~~~~~k~vLIV-~-P~sLl~qW~~E~~k 465 (1060)
=|.|||-.+++++..+...+ +++.+| + |..-+..|.+-..+
T Consensus 11 GGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG--ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcHHHHHHhccc
Confidence 38999988888877776554 444444 4 56667799765544
No 478
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=39.19 E-value=46 Score=37.23 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.2
Q ss_pred cCCCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 412 CQGKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 412 ~~~~GgILaDemGLGKTlqaiali~~l 438 (1060)
..|+..+||-++|+|||-.|+++...+
T Consensus 62 maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 346778999999999998888777665
No 479
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.82 E-value=1.2e+02 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.5
Q ss_pred cCCCCeEE-EcCCCCchHHHHHHHHHHHh
Q 001524 412 CQGKGGIL-GDDMGLGKTMQICGFLAGLF 439 (1060)
Q Consensus 412 ~~~~GgIL-aDemGLGKTlqaiali~~l~ 439 (1060)
...+|-|| .-+||+|||.+..+++.++-
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 34456554 56999999987777776653
No 480
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=38.70 E-value=62 Score=37.42 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=22.1
Q ss_pred cEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCC
Q 001524 529 DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566 (1060)
Q Consensus 529 d~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPi 566 (1060)
..+.+||.|++. .++.--.+-.+...-.+++-||--
T Consensus 224 TilFiDEiHRFN--ksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 224 TILFIDEIHRFN--KSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred eEEEeHHhhhhh--hhhhhcccceeccCceEEEecccC
Confidence 568999999983 334333443444555566666653
No 481
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=38.64 E-value=64 Score=37.59 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=20.0
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHH
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l 438 (1060)
.+|.+|.-+.|+|||..|-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999998777766543
No 482
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=38.58 E-value=4.6e+02 Score=27.11 Aligned_cols=94 Identities=24% Similarity=0.327 Sum_probs=56.1
Q ss_pred ccchHH-HHHHHHHhhcc----CCCceEEEeccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHHhhcCCCc
Q 001524 751 ISCKIS-FILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVA 821 (1060)
Q Consensus 751 ~S~Kl~-~L~~lL~~~~~----~g~KvLIFsq~~~~ld~L~~~L~~----~gi~~~ridG~~s~~eR~~iI~~F~~~~~~ 821 (1060)
.++|.. ++..++..+.. .+.++||.+..+..+..+...+.. .++.+..++|+.+..++..... . ..
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 120 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK---R--GP 120 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc---C--CC
Confidence 577743 35555555443 456899999998877766555443 4788899999988765544332 2 23
Q ss_pred cEEEEecCC----c-ccccCcccCCEEEEeCCC
Q 001524 822 PIFLLTSQV----G-GLGLTLTKADRVIVVDPA 849 (1060)
Q Consensus 822 ~V~LlST~a----g-g~GLNLt~A~~VIi~D~~ 849 (1060)
.|++.|... . ..-.++...+.+|+=+.+
T Consensus 121 ~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 121 HIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 445555321 1 112566677776654333
No 483
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=38.55 E-value=79 Score=32.91 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCccEEEEcCCCcCCC----cchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhh
Q 001524 525 DAIWDYMILDEGHLIKN----PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 580 (1060)
Q Consensus 525 ~~~wd~VIlDEAH~iKN----~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl 580 (1060)
...||+||+||.=..-+ ....+...+.+-+...-|+|||--. +.+|..+.+++
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~---~~~l~e~ADlV 150 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA---PEELIEAADLV 150 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SEE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC---CHHHHHhCCee
Confidence 45699999999865533 2245566666666777799999754 55555555543
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=38.51 E-value=64 Score=39.31 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhcC
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGL 468 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~~ 468 (1060)
+.-.+|.-++|+|||+.|+.|++.-... ...++|+|+--.-..++.+.+..++.
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEESPQDIIKNARSFGW 74 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecCHHHHHHHHHHcCC
Confidence 4555889999999999988887654332 13588888876666666666666543
No 485
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=38.40 E-value=44 Score=35.98 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 415 ~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
+.+.+.--||+|||.++-.++..+.. ....+++|+=|
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~-~~~~~~ii~D~ 60 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLK-KKGAKVIIFDP 60 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCCCEEEEcC
Confidence 45556668999999999988888874 22346666655
No 486
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=38.35 E-value=38 Score=34.59 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=32.8
Q ss_pred CccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhC
Q 001524 527 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCC 581 (1060)
Q Consensus 527 ~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~ 581 (1060)
.+|+||+|=...+.+ ... .+..+.....+++..+|-...+.+...++.++.
T Consensus 67 ~yD~VIiD~pp~~~~---~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 67 ELDYLVIDMPPGTGD---EHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCEEEEeCCCCCcH---HHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 479999998876521 111 222223445666666887788888887777664
No 487
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=38.30 E-value=28 Score=38.88 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=21.5
Q ss_pred cCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 421 DDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 421 DemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
--=|.|||.+++.+++.+...+ +++|+|
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G--~rVLli 35 (279)
T PRK13230 8 GKGGIGKSTTVCNIAAALAESG--KKVLVV 35 (279)
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CEEEEE
Confidence 3558999999998888886543 577777
No 488
>PRK13766 Hef nuclease; Provisional
Probab=38.26 E-value=4.1e+02 Score=34.35 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=67.9
Q ss_pred cccchHHHHHHHHHh-hccCCCceEEEeccHHHHHHHHHHHhhc-C---CeEEEEECCCCHHHHHHHHHHhhcCCCccEE
Q 001524 750 NISCKISFILSLLDK-LIPEGHNVLIFSQTRKMLNLIQESIGSK-G---YKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 824 (1060)
Q Consensus 750 ~~S~Kl~~L~~lL~~-~~~~g~KvLIFsq~~~~ld~L~~~L~~~-g---i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~ 824 (1060)
..++|.....-++.. +...+.++||.+..+..+......+... + .++..++|.++..+|.++... ..|+
T Consensus 38 tG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~ii 111 (773)
T PRK13766 38 TGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AKVI 111 (773)
T ss_pred CCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CCEE
Confidence 357787643333332 2346789999999988776666666543 3 478899999998888665532 3456
Q ss_pred EEecCCcc-----cccCcccCCEEEEeCCCCCchh-hhhhhhhhhhhCCcC
Q 001524 825 LLTSQVGG-----LGLTLTKADRVIVVDPAWNPST-DNQSVDRAYRIGQKK 869 (1060)
Q Consensus 825 LlST~agg-----~GLNLt~A~~VIi~D~~WNp~~-~~QAiGRa~RiGQ~k 869 (1060)
++|.+... .-+++...+.||+-+.+--... -.-.+.+.+|...+.
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 66655432 2345667777877666532111 122344555544443
No 489
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=38.21 E-value=25 Score=40.95 Aligned_cols=47 Identities=17% Similarity=-0.032 Sum_probs=34.6
Q ss_pred CCCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHH
Q 001524 413 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 464 (1060)
Q Consensus 413 ~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~ 464 (1060)
...+.+|.-+.|+|||++|=+++..+ .-++++|....|...|.-|=+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsE 193 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPG 193 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHH
Confidence 34677888899999999988877765 235667777888888865543
No 490
>PRK10436 hypothetical protein; Provisional
Probab=38.04 E-value=47 Score=40.14 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHhhcCCCC-eEEEcCCCCchHHHHHHHHHHH
Q 001524 396 LFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGL 438 (1060)
Q Consensus 396 L~phQ~egV~wl~~~~~~~~G-gILaDemGLGKTlqaiali~~l 438 (1060)
+-+.|...+.++.. ...| .|++-+||+|||.+..+++..+
T Consensus 202 ~~~~~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 56778777777654 2334 3578899999998877776665
No 491
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=38.03 E-value=1.5e+02 Score=38.80 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=56.2
Q ss_pred hhhhcccccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHh----hcC-CeEEE-EECCCCHHHHHHHHHHhhc
Q 001524 744 FQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG----SKG-YKFLR-IDGTTKASDRVKIVNDFQE 817 (1060)
Q Consensus 744 ~~~~~~~~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~----~~g-i~~~r-idG~~s~~eR~~iI~~F~~ 817 (1060)
|.-..+...+|..+.+-+-.-+...|.|++|-...+..+.+..+.|. ..| ..... |||.++.+++++++++|.+
T Consensus 100 FaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~ 179 (1187)
T COG1110 100 FAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES 179 (1187)
T ss_pred eEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc
Confidence 33334445678776654444444477888888777765555555444 334 33333 8999999999999999999
Q ss_pred CCCccEEEEecCCcc
Q 001524 818 GDVAPIFLLTSQVGG 832 (1060)
Q Consensus 818 ~~~~~V~LlST~agg 832 (1060)
|. ..|++.|++-..
T Consensus 180 gd-fdIlitTs~FL~ 193 (1187)
T COG1110 180 GD-FDILITTSQFLS 193 (1187)
T ss_pred CC-ccEEEEeHHHHH
Confidence 87 344554444433
No 492
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=37.98 E-value=48 Score=33.84 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=38.5
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhc
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK 792 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~ 792 (1060)
.++++.++.+|+.+....|.|++|.+.....+..|-..|-..
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999653
No 493
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=37.21 E-value=30 Score=38.30 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=22.1
Q ss_pred cCCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 421 DDMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 421 DemGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
.--|.|||.+++.+++.+... .+++|+|
T Consensus 9 ~KGGVGKTT~~~nLA~~la~~--G~kVLli 36 (270)
T PRK13185 9 GKGGIGKSTTSSNLSAAFAKL--GKKVLQI 36 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 467999999999888888654 3578777
No 494
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=37.03 E-value=84 Score=37.48 Aligned_cols=56 Identities=16% Similarity=-0.025 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHH-HhhccCCCceEEEeCcccHHHHHH
Q 001524 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG-LFHSRLIKRALVVAPKTLLSHWIK 461 (1060)
Q Consensus 401 ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~-l~~~~~~k~vLIV~P~sLl~qW~~ 461 (1060)
...+..++.....+.+.|+.-+.|+|||-.+.++... ....+ ..+++..|+.+-..
T Consensus 196 ~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 196 LLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG-----GTITVAKLFYNIST 252 (449)
T ss_pred HHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----CcCcHHHHHHHHHH
Confidence 3334444444566889999999999999877775554 33333 55667777766554
No 495
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=36.95 E-value=82 Score=33.83 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=24.7
Q ss_pred CCCeEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeC
Q 001524 414 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452 (1060)
Q Consensus 414 ~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P 452 (1060)
+...+|.-+.|+|||-.+.++....... ..+++++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeh
Confidence 4567889999999998777766654332 234555543
No 496
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=36.78 E-value=32 Score=36.66 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 422 DMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 422 emGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
--|.|||.++..++..+...+ +++|||
T Consensus 8 KGGvGKTt~~~nLA~~la~~G--~rvLli 34 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMG--KKVLQV 34 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCC--CcEEEE
Confidence 679999999988888887643 577776
No 497
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.56 E-value=51 Score=33.12 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHHhhccCCCceEEEeccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHHhhcCCCccEEEE
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLL 826 (1060)
Q Consensus 751 ~S~Kl~~L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~~g----i~~~ridG~~s~~eR~~iI~~F~~~~~~~V~Ll 826 (1060)
...+...+..|+.+....|+|++|+|.....++.|-+.|-... ++..+..+... ....|+|
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~l- 75 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGPA--------------AGQPVLL- 75 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCCC--------------CCCCEEE-
Confidence 3568899999999999999999999999999999999997642 22222111110 1234454
Q ss_pred ecCCcccccCcccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHH
Q 001524 827 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893 (1060)
Q Consensus 827 ST~agg~GLNLt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K 893 (1060)
+. +..-+...++.+|++++.+=+. .++..| |+-++ ...-+.+-..|...|
T Consensus 76 ~~---~~~~~~~~~~~LinL~~~~p~~--~~~F~R-----------vieiv-~~d~~~~~~aR~r~r 125 (142)
T PRK05728 76 TW---PGKRNANHRDLLINLDGAVPAF--AAAFER-----------VVDFV-GYDEAAKQAARERWK 125 (142)
T ss_pred Ec---CCCCCCCCCcEEEECCCCCcch--hhcccE-----------EEEEe-CCCHHHHHHHHHHHH
Confidence 31 1123556778888888764222 222222 55566 345555555666555
No 498
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=36.03 E-value=59 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=21.5
Q ss_pred EEcCCCCchHHHHHHHHHHHhhccCCCceEEEe
Q 001524 419 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451 (1060)
Q Consensus 419 LaDemGLGKTlqaiali~~l~~~~~~k~vLIV~ 451 (1060)
++-..|.|||..+..++..+... ..+++++-
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~--g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKR--GKRVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--CCeEEEEC
Confidence 44445999999988888777652 34566555
No 499
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.98 E-value=32 Score=38.81 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHHHhhccCCCceEEE
Q 001524 422 DMGLGKTMQICGFLAGLFHSRLIKRALVV 450 (1060)
Q Consensus 422 emGLGKTlqaiali~~l~~~~~~k~vLIV 450 (1060)
-=|.|||.+++.+++.+...+ +++|+|
T Consensus 8 KGGVGKTTta~nLA~~La~~G--~rVLlI 34 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRG--KKVLQI 34 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 457999999999888886543 567765
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=35.95 E-value=79 Score=38.71 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHhhccCCCceEEEeCcccHHHHHHHHHHhc
Q 001524 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467 (1060)
Q Consensus 417 gILaDemGLGKTlqaiali~~l~~~~~~k~vLIV~P~sLl~qW~~E~~k~~ 467 (1060)
.++.-++|+|||..++.+++..... ..++++|+--....+-.+.+..++
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 3678899999999999888766543 368888877555566555555554
Done!