Query 001524
Match_columns 1060
No_of_seqs 457 out of 2548
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:14:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001524.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_826-829//hhsearch_pdb/001524hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 697.9 41.1 511 385-933 45-580 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 672.7 43.8 481 391-925 232-736 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 616.7 38.3 462 389-926 31-500 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 487.5 19.3 445 392-901 150-636 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 395.4 27.9 440 393-898 7-493 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 359.2 30.2 464 393-903 246-771 (936)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 357.2 21.3 377 393-896 91-470 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 352.9 35.0 465 393-903 246-771 (797)
9 1z5z_A Helicase of the SNF2/RA 1.0 1 1 345.9 23.2 251 630-926 13-271 (271)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 336.2 39.6 465 393-903 5-530 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=697.91 Aligned_cols=511 Identities=31% Similarity=0.529 Sum_probs=424.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-----CCCCEEEEECCC
Q ss_conf 644684235998768999999999962-----3798709981899726899999999982316-----899449996720
Q 001524 385 TYMLPGKIGNMLFPHQREGLRWLWSLH-----CQGKGGILGDDMGLGKTMQICGFLAGLFHSR-----LIKRALVVAPKT 454 (1060)
Q Consensus 385 ~~~lp~~l~~~L~phQ~egV~wL~~~~-----~~~~GgILaDemGLGKTiqaiall~~l~~~~-----~~k~vLIV~P~s 454 (1060)
...+++.+...|+|||++|++||+..+ ..+.||||||+||+|||+|+++++..+.... ..+++|||||.+
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 17518564003519999999999984233544588875961078742999999999999974866567778579996589
Q ss_pred CHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHH------CCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 099999999981579-73899806343113578899650------78799950899971111123887656768988777
Q 001524 455 LLSHWIKELTAVGLS-AKIREYFGTCVKTRQYELQYVLQ------DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 527 (1060)
Q Consensus 455 Ll~qW~~El~k~~~~-~~v~~~~g~~~~~r~~~~~~~~~------~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~ 527 (1060)
++.||..||.+|.+. ..+..+++.........+..+.. .++|+|+||++++.....+ ....
T Consensus 125 ll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l------------~~~~ 192 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL------------HKGK 192 (644)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT------------TTSC
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH------------HCCC
T ss_conf 9887999999975887259998089889999999999873377778757996389987657875------------0488
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCH
Q ss_conf 03899928975799622999999828877348863689989989999998642798889947899882001014788310
Q 001524 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 607 (1060)
Q Consensus 528 wd~IIiDEAH~iKN~~sk~~kal~~l~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~ 607 (1060)
|++||+||||++||..++.++++..+.+.+||+|||||+||++.|+|++++|+.|+++++...|...|..|+..+....+
T Consensus 193 ~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~ 272 (644)
T 1z3i_X 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADA 272 (644)
T ss_dssp CCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTC
T ss_pred CCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCC
T ss_conf 65799878622478045999999855567379984673458899999999861887689999999863261541677677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 0588883289999999986689998521000355764422346865138999638999999999999669876203----
Q 001524 608 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF---- 683 (1060)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~~---- 683 (1060)
...+...+.....+|+.++.||++||++.++.. .||++.+.+++|+|++.|+.+|+.++.........
T Consensus 273 ~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~--------~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~ 344 (644)
T 1z3i_X 273 SDKDRAAGEQKLQELISIVNRCLIRRTSDILSK--------YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGK 344 (644)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG--------TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888999999999999999889998710876764--------279836999983799899999999999899999876276
Q ss_pred -CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf -7995899999999821913453556666641023689947899999999889654211245531123211599999999
Q 001524 684 -DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL 762 (1060)
Q Consensus 684 -~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL 762 (1060)
....+..++.||++|+||.++........ .+.... .................|+|+..+..++
T Consensus 345 ~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~s~K~~~l~~ll 408 (644)
T 1z3i_X 345 ISVSSLSSITSLKKLCNHPALIYEKCLTGE-EGFDGA---------------LDLFPQNYSTKAVEPQLSGKMLVLDYIL 408 (644)
T ss_dssp CCHHHHHHHHHHHHHHHCTHHHHHHHHHTC-TTCTTG---------------GGTSCSSCCSSSCCGGGSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHCCC-CHHHHH---------------HHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 214599999999999579998888874154-003557---------------7645421110005701174899999999
Q ss_pred HHHCC-CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCC
Q ss_conf 86644-99806898232999999999985259919999799998899999998606999-65899933776434585567
Q 001524 763 DKLIP-EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKA 840 (1060)
Q Consensus 763 ~~~~~-~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~-~~VlLlST~agg~GLNLt~A 840 (1060)
..+.. .++|+||||+++.++++|+..|...|+.+.+++|+++..+|++++++|+++.. .++||+||++||+||||+.|
T Consensus 409 ~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a 488 (644)
T 1z3i_X 409 AMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGA 488 (644)
T ss_dssp HHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTE
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99864699879999805999999999999779978998399999999999999639999967999844556678465238
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHH
Q ss_conf 98999099999113545534332309967499999931999999999999999879999820531-02457998899987
Q 001524 841 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 919 (1060)
Q Consensus 841 ~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf 919 (1060)
++||+||++|||+.+.||+||+||+||+++|+||+|++.||+||+|+.+|..|..++..++++.. ..+.|+.++|++||
T Consensus 489 ~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf 568 (644)
T 1z3i_X 489 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 568 (644)
T ss_dssp EEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf 98999799998137999988403228987269999887988999999999999999999856860543378999999986
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 69999987014489
Q 001524 920 SLPKQGFDVSLTQQ 933 (1060)
Q Consensus 920 ~~~~~~~~~s~tq~ 933 (1060)
++.... .+.|..
T Consensus 569 ~~~~~~--~~~t~~ 580 (644)
T 1z3i_X 569 SLNEKT--LSDTHD 580 (644)
T ss_dssp CCCSSC--SCHHHH
T ss_pred CCCCCC--CCHHHH
T ss_conf 789876--322566
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=672.75 Aligned_cols=481 Identities=31% Similarity=0.466 Sum_probs=397.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 23599876899999999996237987099818997268999999999823-16899449996720099999999981579
Q 001524 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTAVGLS 469 (1060)
Q Consensus 391 ~l~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~-~~~~k~vLIV~P~sLl~qW~~El~k~~~~ 469 (1060)
.....|+|||++|++||+..+..+.||||||+||+|||+|+++++..++. ....+++|||||.+++.||..||.+|+|.
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 57997589999999999998513899899827875329999999999998607799889998803899999999997799
Q ss_pred CCEEEECCCCCCHHHHHHH----------HHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 7389980634311357889----------965078799950899971111123887656768988777038999289757
Q 001524 470 AKIREYFGTCVKTRQYELQ----------YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539 (1060)
Q Consensus 470 ~~v~~~~g~~~~~r~~~~~----------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~i 539 (1060)
..+..++|........... .....++|+|+||+++.+....+. ...|++||+||||++
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~------------~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG------------SIKWQFMAVDEAHRL 379 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH------------TSEEEEEEETTGGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHH------------CCCCCEEEHHHHHHH
T ss_conf 64999827777788988877622630013445667889906999986499983------------377325641344441
Q ss_pred CCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99622999999828877348863689989989999998642798889947899882001014788310058888328999
Q 001524 540 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619 (1060)
Q Consensus 540 KN~~sk~~kal~~l~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 619 (1060)
||..++.++++..+++.+||+|||||+||++.|+|++++|+.|+.++....|...... .......
T Consensus 380 kn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~ 444 (800)
T 3mwy_W 380 KNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYI 444 (800)
T ss_dssp CCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC---------------HHHHHHH
T ss_conf 4710199999997522438972278577999999999998586636743442322231---------------4689999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHH
Q ss_conf 9999986689998521000355764422346865138999638999999999999669876-----20379958999999
Q 001524 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL-----SAFDGSPLAALTIL 694 (1060)
Q Consensus 620 ~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~-----~~~~~~~l~~l~~L 694 (1060)
..|+..++||++||++.++.. .+|++.+.+++|+|++.|+.+|..++...... .......+..++.|
T Consensus 445 ~~L~~~l~p~~lRR~k~dv~~--------~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~L 516 (800)
T 3mwy_W 445 HDLHRRIQPFILRRLKKDVEK--------SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNEL 516 (800)
T ss_dssp HHHHHTTGGGEEECCGGGGTT--------TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999999757775320876643--------168827999970799999999999999999998610354544699999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99821913453556666641023689947899999999889654211245531123211599999999866449980689
Q 001524 695 KKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLI 774 (1060)
Q Consensus 695 rkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLI 774 (1060)
|++|+||+++................... .........|+|+..|.++|..+...|+|+||
T Consensus 517 rk~~~hp~l~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLI 577 (800)
T 3mwy_W 517 KKASNHPYLFDNAEERVLQKFGDGKMTRE-------------------NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 577 (800)
T ss_dssp HHHHHCGGGSSSHHHHHCCCC----CCSH-------------------HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHCCHHHHCCHHHHHHHHCCCCCCCHH-------------------HHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98735865423557899886156655577-------------------88887664276999999999997527981899
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 823299999999998525991999979999889999999860699-9658999337764345855679899909999911
Q 001524 775 FSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853 (1060)
Q Consensus 775 Fsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~-~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~ 853 (1060)
|||++.++++|..+|...|+++.+++|+++..+|+++++.|+++. ..++||+||++||+||||+.|++||+||++|||+
T Consensus 578 Fsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~ 657 (800)
T 3mwy_W 578 FSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 657 (800)
T ss_dssp EESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSH
T ss_pred EECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 96359999999999986799789996999999999999996089998259997454456787760163689946878811
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHHCCCCCC
Q ss_conf 3545534332309967499999931999999999999999879999820531-------02457998899987699999
Q 001524 854 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-------QIRYFSQQDLRELLSLPKQG 925 (1060)
Q Consensus 854 ~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-------~~r~fs~~eL~eLf~~~~~~ 925 (1060)
.+.||+||+||+||+++|+||+|++.+|+||+|++++..|..+...+++... .....+..+|.+|+.++...
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~ 736 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGN 736 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 6899999988558986379999861998999999999998889999970375665321123478999999999716576
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=616.68 Aligned_cols=462 Identities=33% Similarity=0.553 Sum_probs=404.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 84235998768999999999962379870998189972689999999998231689944999672009999999998157
Q 001524 389 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGL 468 (1060)
Q Consensus 389 p~~l~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~~k~vLIV~P~sLl~qW~~El~k~~~ 468 (1060)
|..+...|+|||.+|+.|++..+..+.||||+|+||+|||+++++++..+......+++|||||.+++.||.+||.+|++
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCC
T ss_conf 83320033699999999999974179988998089973899999999988755899978999038999999999999779
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 97389980634311357889965078799950899971111123887656768988777038999289757996229999
Q 001524 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 548 (1060)
Q Consensus 469 ~~~v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk~~k 548 (1060)
...+..+.+..... ....++|+|+||+++..... + ....|++||+||||+++|..+++++
T Consensus 111 ~~~v~~~~g~~~~~-------~~~~~~ivi~t~~~l~~~~~-l------------~~~~~~~vIvDEaH~~kn~~~~~~~ 170 (500)
T 1z63_A 111 HLRFAVFHEDRSKI-------KLEDYDIILTTYAVLLRDTR-L------------KEVEWKYIVIDEAQNIKNPQTKIFK 170 (500)
T ss_dssp TSCEEECSSSTTSC-------CGGGSSEEEEEHHHHTTCHH-H------------HTCCEEEEEEETGGGGSCTTSHHHH
T ss_pred CCEEEEEECCCHHC-------CCCCCCEEEEEHHHHHCCCH-H------------CCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 95599972670210-------03577689963799726302-1------------1787287998084101787689999
Q ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99828877348863689989989999998642798889947899882001014788310058888328999999998668
Q 001524 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628 (1060)
Q Consensus 549 al~~l~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p 628 (1060)
++..+++.+||+|||||++|++.|+|++++|+.|+.+++...|...|..|+..+. ......|+..+.|
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l~~ 238 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAIISP 238 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC------------HHHHHHHHHHHHH
T ss_conf 9996004718997467777999999999998587757998999998525111466------------8899999999766
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHCCHH
Q ss_conf 999852100035576442234686513899963899999999999966987620------37995899999999821913
Q 001524 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA------FDGSPLAALTILKKICDHPL 702 (1060)
Q Consensus 629 ~~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~------~~~~~l~~l~~Lrkic~hP~ 702 (1060)
+++||++.+... ...+|++.+.++++.+++.|+.+|+.+......... ..+..+..+..++++|+||.
T Consensus 239 ~~lrr~k~~~~~------~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~ 312 (500)
T 1z63_A 239 FILRRTKYDKAI------INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 312 (500)
T ss_dssp TEECCCTTCHHH------HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTH
T ss_pred HEEEECCCCCCH------HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH
T ss_conf 745502554241------12299975899981899999999999999999999864232106799999999998817998
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHH
Q ss_conf 45355666664102368994789999999988965421124553112321159999999986644998068982329999
Q 001524 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782 (1060)
Q Consensus 703 L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~l 782 (1060)
++.... .....++|+..+.+++.++..+++|+||||+++.++
T Consensus 313 l~~~~~--------------------------------------~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~ 354 (500)
T 1z63_A 313 LLKGGE--------------------------------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMG 354 (500)
T ss_dssp HHHCSC--------------------------------------CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHH
T ss_pred HHCCCC--------------------------------------CHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHH
T ss_conf 843852--------------------------------------011115529999999999872688689997218899
Q ss_pred HHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999998525-991999979999889999999860699965899933776434585567989990999991135455343
Q 001524 783 NLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 861 (1060)
Q Consensus 783 d~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGR 861 (1060)
+.|...|... |+.+.+++|+++..+|+++++.|++++...++|++|+++++|+||+.|++||+||++|||..+.||+||
T Consensus 355 ~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR 434 (500)
T 1z63_A 355 KIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDR 434 (500)
T ss_dssp HHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999998853887699979999999999999960899987799953335577744558889995899895458999998
Q ss_pred HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCC
Q ss_conf 32309967499999931999999999999999879999820531-024579988999876999998
Q 001524 862 AYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGF 926 (1060)
Q Consensus 862 a~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~~~~~~~ 926 (1060)
++|+||+++|+||+|++.+|+|++|+.++..|..++..++++.+ ....++.+||++||.+...|+
T Consensus 435 ~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 500 (500)
T 1z63_A 435 VYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGGY 500 (500)
T ss_dssp TTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC---
T ss_pred HHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCCCC
T ss_conf 887389870699997748989999999999999999998606850211599999999964688999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=487.50 Aligned_cols=445 Identities=18% Similarity=0.219 Sum_probs=322.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 35998768999999999962379870998189972689999999998231689944999672009999999998157973
Q 001524 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 392 l~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~~k~vLIV~P~sLl~qW~~El~k~~~~~~ 471 (1060)
....|+|||.+++.|++... +.++||||+||+|||+++++++..+...+..+++|||||.+|+.||..||.+++ +..
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH-CCC
T ss_conf 89997099999999999705--898898789997599999999999998189982999957888999999999986-998
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH---HHH
Q ss_conf 89980634311357889965078799950899971111123887656768988777038999289757996229---999
Q 001524 472 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ---RAK 548 (1060)
Q Consensus 472 v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk---~~k 548 (1060)
+.++.+.............+..++|+|+||+++.+....... +....|++||+||||+++|..+. .++
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~---------l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEH---------LCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHH---------HHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred EEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHHHHHH---------HHHCCCCEEEEHHHHHHCCCCCCCHHHHH
T ss_conf 799806205554320036445689899768998648788887---------64158778974446762588875429999
Q ss_pred HHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC---------CCCC---------CCHH
Q ss_conf 99828--87734886368998998999999864279888994789988200101---------4788---------3100
Q 001524 549 SLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL---------RGND---------KHAL 608 (1060)
Q Consensus 549 al~~l--~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~---------~~~~---------~~~~ 608 (1060)
++..+ .+.++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+.. ....
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99998625785899976876698799999998259301189899999998578899999987426789988999999884
Q ss_pred H-------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 5-------------888832899999999866-----8999852100035576442234686513899963899999999
Q 001524 609 D-------------REKRIGSAVAKELRERIQ-----PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLY 670 (1060)
Q Consensus 609 ~-------------~~~~~~~~~~~~L~~~l~-----p~~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY 670 (1060)
. ............+..++. .+++|+++.. ...+|.+....+.+.+++..+..|
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~---------i~~~p~r~~~~~~l~~~~~~~~~~ 448 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNG---------VKGFPKRELHTIKLPLPTQYQTAI 448 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTT---------CCCCCCCCCCEEEECCCHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HCCCCHHHEEEEECCCCHHHHHHH
T ss_conf 20336788750362223337999999999998617332656322655---------455671115752368999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99996698762037995899999999821913453556666641023689947899999999889654211245531123
Q 001524 671 EAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 750 (1060)
Q Consensus 671 ~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 750 (1060)
...... ....+.... ...+.+|...... +.. .......
T Consensus 449 ~~~~~~-------~~~~~~~~~--~~~~l~pe~~~~~--------l~~-------------------------~~~~~~~ 486 (968)
T 3dmq_A 449 KVSGIM-------GARKSAEDR--ARDMLYPERIYQE--------FEG-------------------------DNATWWN 486 (968)
T ss_dssp HHHHHT-------TCCSSGGGG--THHHHCSGGGTTT--------TTS-------------------------SSCCTTT
T ss_pred HHHHHH-------HHHHHHHHH--HHHHCCHHHHHHH--------HHH-------------------------HHHCCCC
T ss_conf 987543-------021266777--7641085989987--------643-------------------------3313568
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 21159999999986644998068982329999999999852-59919999799998899999998606999658999337
Q 001524 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS-KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 829 (1060)
Q Consensus 751 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~-~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~ 829 (1060)
.+.|+..|.+++.. ..+.|+||||+++.+++.|...|.. .|+++..+||+++..+|.++++.|+++.....+|++|.
T Consensus 487 ~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 56799999999983--7999789996959999999999998749838998499999999999999747997630898533
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764345855679899909999911354553433230996749999993199999999999999987999982
Q 001524 830 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 901 (1060)
Q Consensus 830 agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~ 901 (1060)
++++|+|++.+++||+||+||||..+.|++||++|+||++.|++|++++.+|+|++|++.+..|..++...+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~ 636 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTC 636 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCC
T ss_conf 431688855676799956999878999870114307998508999805777199999999986787635379
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=395.35 Aligned_cols=440 Identities=16% Similarity=0.118 Sum_probs=291.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCHHHHHHHHHHHC--CC
Q ss_conf 599876899999999996237987099818997268999999999823168994499967-200999999999815--79
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVG--LS 469 (1060)
Q Consensus 393 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~~k~vLIV~P-~sLl~qW~~El~k~~--~~ 469 (1060)
...|+|||.+++.|++. + ++||+++||+|||++++.++..+.. ...+++||||| .+|+.||.+++.+|. +.
T Consensus 7 ~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHHCCCH
T ss_conf 87863999999999961----9-9899918998789999999999986-4798599997888999999999998747561
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH--HH
Q ss_conf 7389980634311357889965078799950899971111123887656768988777038999289757996229--99
Q 001524 470 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ--RA 547 (1060)
Q Consensus 470 ~~v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk--~~ 547 (1060)
..+..++|....... ...+...+|+|+||+.+........ .....|++||+||||++++.... ..
T Consensus 81 ~~v~~~~g~~~~~~~---~~~~~~~~ivv~T~~~l~~~~~~~~----------~~~~~~~~vIiDEaH~~~~~~~~~~~~ 147 (494)
T 1wp9_A 81 EKIVALTGEKSPEER---SKAWARAKVIVATPQTIENDLLAGR----------ISLEDVSLIVFDEAHRAVGNYAYVFIA 147 (494)
T ss_dssp GGEEEECSCSCHHHH---HHHHHHCSEEEECHHHHHHHHHTTS----------CCTTSCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHEEEEECCCCHHHH---HHHCCCCCEEEECHHHHHHHHHCCC----------CCHHHCEEEEEECCCCCCCCCCHHHHH
T ss_conf 116876077533556---6533579899963999999986087----------156541089997875668888199999
Q ss_pred HHHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC---CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998-2887734886368998998999999864279888---99478998820010147883100588883289999999
Q 001524 548 KSLL-EIPSAHRIIISGTPIQNNLKELWALFNFCCPELL---GDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623 (1060)
Q Consensus 548 kal~-~l~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l---~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 623 (1060)
..+. ..+..++|+|||||. |+..+++.++.++.+... .....+...|..+......... .......+.
T Consensus 148 ~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 219 (494)
T 1wp9_A 148 REYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD-------LPEIYKEVR 219 (494)
T ss_dssp HHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC-------CCHHHHHHH
T ss_pred HHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC-------CCHHHHHHH
T ss_conf 99973288776999956998-8857899999850700050267875878875278742689568-------858899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHH---------------
Q ss_conf 98668999852100035576442234686513899963899999999999966987620379958---------------
Q 001524 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL--------------- 688 (1060)
Q Consensus 624 ~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~~~~~~l--------------- 688 (1060)
..+.+++.++.+....... +++.. ..++..........+.... .......+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 285 (494)
T 1wp9_A 220 KLLREMLRDALKPLAETGL-------LESSS-----PDIPKKEVLRAGQIINEEM--AKGNHDLRGLLLYHAMALKLHHA 285 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTS-------SSCCC-----TTSCHHHHHHHHHHHHHHH--TTTCCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-------CCCCC-----CCCCHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9898999999999997355-------65457-----7733557899999999875--33563113479999888889999
Q ss_pred -------------HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf -------------9999999982191345355666664102368994789999999988965421124553112321159
Q 001524 689 -------------AALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKI 755 (1060)
Q Consensus 689 -------------~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl 755 (1060)
..+..+...+.++...... .. ...+........+ . ........++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~----~-------~~~~~~~~~~k~ 345 (494)
T 1wp9_A 286 IELLETQGLSALRAYIKKLYEEAKAGSTKASK---EI------FSDKRMKKAISLL----V-------QAKEIGLDHPKM 345 (494)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH---HH------HTSHHHHHHHHHH----H-------HHHHHTCSCHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHH---HH------HHHHHHHHHHHHH----H-------HHHHCCCCCHHH
T ss_conf 99998525799999999998752232114556---66------6507889899999----9-------887458998699
Q ss_pred HHHHHHHHHHC--CCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999998664--49980689823299999999998525991999979--------999889999999860699965899
Q 001524 756 SFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG--------TTKASDRVKIVNDFQEGDVAPIFL 825 (1060)
Q Consensus 756 ~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG--------~~s~~eR~~iI~~F~~~~~~~VlL 825 (1060)
..|.++|..+. ..++|+||||+++.+++.+...|...|+.+.+++| +++..+|+++++.|+++... +|
T Consensus 346 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~--vL 423 (494)
T 1wp9_A 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN--VL 423 (494)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS--EE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCE--EE
T ss_conf 9999999998436899759999766899999999999759980799656654444458999999999998669946--99
Q ss_pred EECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9337764345855679899909999911354553433230996749999993199999999999999987999
Q 001524 826 LTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 898 (1060)
Q Consensus 826 lST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~ 898 (1060)
++|.++++|+|++.+++||+||++|||..+.|++||++|.|| +.+|+|++.+|+|++++.++..|..+++
T Consensus 424 v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred EECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 988841258871437989992898878999998752257788---4699999569878999998887898730
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=359.24 Aligned_cols=464 Identities=14% Similarity=0.135 Sum_probs=274.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEEC-CCCHHHHHHHHHHHCC
Q ss_conf 599876899999999996237987099818997268999999999823168---994499967-2009999999998157
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 393 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~---~k~vLIV~P-~sLl~qW~~El~k~~~ 468 (1060)
...|+|||.+++.|+.. ++++|++++||+|||++++..+...+.... .+++||||| ..|+.||..+|.++++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 89877999999999980----99899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf --973899806343113578899650787999508999711111238876567689887770389992897579962299
Q 001524 469 --SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546 (1060)
Q Consensus 469 --~~~v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk~ 546 (1060)
+..+..++|....... ........+|+|+||+++......... .....|++||+||||++.+.....
T Consensus 322 ~~~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~~~---------~~l~~~~liViDEaH~~~~~~~~~ 390 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYN 390 (936)
T ss_dssp TTTCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSSSC---------CCGGGCSEEEEETGGGCSTTCHHH
T ss_pred CCCCEEEEEECCCCHHHH--HHHHCCCCCEEEECHHHHHHHHHCCCC---------CCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 169559999799631257--897416999999449999999871764---------533678799998731359986699
Q ss_pred HHHHHC---------CCCCCEEEEECCCCCCCHHHHHH-------HHHHHCCC----CCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 999982---------88773488636899899899999-------98642798----88994789988200101478831
Q 001524 547 AKSLLE---------IPSAHRIIISGTPIQNNLKELWA-------LFNFCCPE----LLGDNKWFKEKYELPILRGNDKH 606 (1060)
Q Consensus 547 ~kal~~---------l~s~~RilLTGTPiqN~l~EL~s-------Ll~fl~p~----~l~~~~~F~~~f~~pi~~~~~~~ 606 (1060)
..+.. .+..++++|||||.+++..+++. +...+.+. .......+...+..|........
T Consensus 391 -~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 391 -VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (936)
T ss_dssp -HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECC
T ss_pred -HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECC
T ss_conf -9999999986313788673998638855454020899999999999854971553465448999875367762377336
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE-----------EEEEECCCHHHHHHHHHH
Q ss_conf --0058888328999999998668999852100035576442234686513-----------899963899999999999
Q 001524 607 --ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNE-----------MIVWLRLTSCQRQLYEAF 673 (1060)
Q Consensus 607 --~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~e-----------~vv~~~Ls~~Q~~lY~~~ 673 (1060)
...............++..+..++. ...+... ....++.... .....+.......+|..+
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~----~~~l~~~---~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l 542 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAY----VDTLSQN---SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC-------------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 556757999999999999999998876----6555320---223322577999999999988774055321035799999
Q ss_pred HHHHHHHH--------HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96698762--------0379958999999998219134535566666410236899478999999998896542112455
Q 001524 674 LNSEIVLS--------AFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQ 745 (1060)
Q Consensus 674 l~~~~~~~--------~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~ 745 (1060)
........ .........+..++..+.... .....+.+......+....... ....
T Consensus 543 ~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~e~~l~~~~~~~~~~l---~~~~ 605 (936)
T 4a2w_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVK--------------NGPYTELEQHLTAKFQEKEPEL---IALS 605 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--------------HTTCCHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--------------HCCCCHHHHHHHHHHHHHHHHH---HHHH
T ss_conf 9999999998888750020428889999999999876--------------3258878999999899999999---9764
Q ss_pred HHCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHH
Q ss_conf 311232115999999998664--49980689823299999999998525------------9919999799998899999
Q 001524 746 EQHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRIDGTTKASDRVKI 811 (1060)
Q Consensus 746 ~~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~ridG~~s~~eR~~i 811 (1060)
......++|+..|.++|.+.. ..++|+||||+++.+++.|...|... |..+..+||+|+..+|.++
T Consensus 606 ~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~i 685 (936)
T 4a2w_A 606 KDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 685 (936)
T ss_dssp TSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 05677897999999999998535899749999697999999999986373536666169965787656788899999999
Q ss_pred HHHHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 998606-9996589993377643458556798999099999113545534332309967499999931999999999999
Q 001524 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 890 (1060)
Q Consensus 812 I~~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq 890 (1060)
+++|+. +... +|++|.++++|||++.++.||+||+||||..+.|++|| ||.+++.+|+|++.+|++++.+ .+
T Consensus 686 l~~Fr~~g~~~--VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~ 758 (936)
T 4a2w_A 686 LDAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CN 758 (936)
T ss_dssp --------CCS--EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HH
T ss_pred HHHHHCCCCEE--EEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HH
T ss_conf 99863159815--99980726427760558989993899988999996487----7888877999986988999999-98
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9998799998205
Q 001524 891 IFKGGLFKTATEH 903 (1060)
Q Consensus 891 ~~K~~l~~~~~~~ 903 (1060)
..|..++..++..
T Consensus 759 ~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 759 RYKEEMMNKAVEK 771 (936)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=357.15 Aligned_cols=377 Identities=20% Similarity=0.215 Sum_probs=264.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCHHHHHHHHHHHCCCCC
Q ss_conf 599876899999999996237987099818997268999999999823168994499967-2009999999998157973
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELTAVGLSAK 471 (1060)
Q Consensus 393 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~~k~vLIV~P-~sLl~qW~~El~k~~~~~~ 471 (1060)
...|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++||||| .+|+.||.++|.+| +..
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~ 159 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEE 159 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CGG
T ss_pred CCCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHC--CCC
T ss_conf 99868899999999996----5987999699998899999999980-----999999987999999999999967--996
Q ss_pred -EEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf -8998063431135788996507879995089997111112388765676898877703899928975799622999999
Q 001524 472 -IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 550 (1060)
Q Consensus 472 -v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk~~kal 550 (1060)
+..+.|.... ..+|+|+||+.+......+. ..|++||+||||++.+.... ..+
T Consensus 160 ~v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~~~~~-------------~~~~liIvDEaH~~~~~~~~--~~~ 213 (472)
T 2fwr_A 160 YVGEFSGRIKE-----------LKPLTVSTYDSAYVNAEKLG-------------NRFMLLIFDEVHHLPAESYV--QIA 213 (472)
T ss_dssp GEEEBSSSCBC-----------CCSEEEEEHHHHHHTHHHHT-------------TTCSEEEEETGGGTTSTTTH--HHH
T ss_pred CEEEECCCCCC-----------CCCEEEEECHHHHHHHHHHC-------------CCCCEEEEECCCCCCCHHHH--HHH
T ss_conf 36998787677-----------67789997689997799736-------------87778999897578976899--999
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82887734886368998998999999864279888994789988200101478831005888832899999999866899
Q 001524 551 LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630 (1060)
Q Consensus 551 ~~l~s~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 630 (1060)
..+++.++++|||||.+++-.+. . +...+.|.+
T Consensus 214 ~~~~~~~~l~lSATp~~~~~~~~----------------~-------------------------------l~~~~~~~~ 246 (472)
T 2fwr_A 214 QMSIAPFRLGLTATFEREDGRHE----------------I-------------------------------LKEVVGGKV 246 (472)
T ss_dssp HTCCCSEEEEEESCCCCTTSGGG----------------S-------------------------------HHHHTCCEE
T ss_pred HHCCCCEEEEEECCCCCCCCHHH----------------H-------------------------------HHHHHCCEE
T ss_conf 73577818999327668897789----------------9-------------------------------999729857
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 98521000355764422346865138999638999999999999669876203799589999999982191345355666
Q 001524 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAE 710 (1060)
Q Consensus 631 LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~L~~~~~~~ 710 (1060)
.++...++. ...+++.....+.+.+++.++..|..+...........+..+.....+.+. +..
T Consensus 247 ~~~~~~~l~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~---- 309 (472)
T 2fwr_A 247 FELFPDSLA-------GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI------VMA---- 309 (472)
T ss_dssp EECCHHHHT-------SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT------TTT----
T ss_pred EECCHHHHH-------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH------HHH----
T ss_conf 654789870-------676788189999858998999999999999999998647542244668999------987----
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 66410236899478999999998896542112455311232115999999998664499806898232999999999985
Q 001524 711 DVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG 790 (1060)
Q Consensus 711 ~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld~L~~~L~ 790 (1060)
........... ..... ........+.|+..|.+++.. ..++++||||+++.+++.+...|.
T Consensus 310 ---~~~~~~~~~~~--~~~~~------------~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 310 ---SGYDERAYEAL--RAWEE------------ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp ---TCCSSSSSTTT--HHHHH------------HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT
T ss_pred ---HCCCHHHHHHH--HHHHH------------HHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC
T ss_conf ---23698899999--99999------------999763373899999999985--789838999797999999999748
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-C
Q ss_conf 259919999799998899999998606999658999337764345855679899909999911354553433230996-7
Q 001524 791 SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK-K 869 (1060)
Q Consensus 791 ~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~-k 869 (1060)
+..++|.++..+|+++++.|+++... +|++|+++++|+|++.++.||+||++||+..+.|++||++|.||. +
T Consensus 371 -----~~~~~g~~~~~~R~~~~~~F~~g~~~--vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~ 443 (472)
T 2fwr_A 371 -----IPAITHRTSREEREEILEGFRTGRFR--AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKK 443 (472)
T ss_dssp -----CCBCCSSSCSHHHHTHHHHHHHSSCS--BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTC
T ss_pred -----CCEEECCCCHHHHHHHHHHHHCCCCC--EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf -----65562899999999999998679988--89985705148462028689998999988899998763157779985
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 499999931999999999999999879
Q 001524 870 DVVVYRLMTCGTVEEKIYRKQIFKGGL 896 (1060)
Q Consensus 870 ~V~VyrLit~gTiEEkI~~rq~~K~~l 896 (1060)
.|++|.|++.+|+|+++.+++..|..+
T Consensus 444 ~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 444 EAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CEEEEEEEECSCC--------------
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 399999981998537999999876505
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=352.94 Aligned_cols=465 Identities=14% Similarity=0.119 Sum_probs=278.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEEC-CCCHHHHHHHHHHHCC
Q ss_conf 599876899999999996237987099818997268999999999823168---994499967-2009999999998157
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 393 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~---~k~vLIV~P-~sLl~qW~~El~k~~~ 468 (1060)
...|+|||.+++.++.. ++++|++++||+|||++++..+...+.... .+++||||| ..|+.||..+|.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 89999999999999980----99989996999729999999999999846656799699996989999999999998614
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf --973899806343113578899650787999508999711111238876567689887770389992897579962299
Q 001524 469 --SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546 (1060)
Q Consensus 469 --~~~v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk~ 546 (1060)
+..+..++|....... ........+|+|+||+.+......... .....|++||+||||++.+.....
T Consensus 322 ~~~~~v~~~~g~~~~~~~--~~~~~~~~~Ivv~Tp~~l~~~l~~~~~---------~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp GGTCCEEEECCC-----C--HHHHHHTCSEEEECHHHHHHHHHSSSC---------CCGGGCSEEEETTGGGCSTTSHHH
T ss_pred CCCCEEEEEECCCCHHHH--HHHHHCCCCEEEECHHHHHHHHHHCCC---------CCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 379469999699623246--997407999999766999999982654---------651337789998863558876499
Q ss_pred HH---HHHC-----CCCCCEEEEECCCCCCCH----------HHHHHHHHHHCCC-CCCCHHHHHHHHHCCCCCCCCCC-
Q ss_conf 99---9982-----887734886368998998----------9999998642798-88994789988200101478831-
Q 001524 547 AK---SLLE-----IPSAHRIIISGTPIQNNL----------KELWALFNFCCPE-LLGDNKWFKEKYELPILRGNDKH- 606 (1060)
Q Consensus 547 ~k---al~~-----l~s~~RilLTGTPiqN~l----------~EL~sLl~fl~p~-~l~~~~~F~~~f~~pi~~~~~~~- 606 (1060)
.. .+.. .+..++++|||||.+++. .+++..++.-... .......+...+..|........
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 470 (797)
T 4a2q_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 470 (797)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCC
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999763147887859997277554552248999999999998549848854543178899735888548884577
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----------EEEEEECCCHHHHHHHHHHH
Q ss_conf -005888832899999999866899985210003557644223468651-----------38999638999999999999
Q 001524 607 -ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN-----------EMIVWLRLTSCQRQLYEAFL 674 (1060)
Q Consensus 607 -~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~-----------e~vv~~~Ls~~Q~~lY~~~l 674 (1060)
...............++..+..++-....... .. ..+.... ...........+..+|..+.
T Consensus 471 ~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~-~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 471 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQN-SK------KDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC-------------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC------CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 778678999999999999999998756776530-00------01140567789999999877740343202567999999
Q ss_pred HHHHHHH--------HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6698762--------03799589999999982191345355666664102368994789999999988965421124553
Q 001524 675 NSEIVLS--------AFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 746 (1060)
Q Consensus 675 ~~~~~~~--------~~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 746 (1060)
....... ............++..|.+... .............+...... ......
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~---l~~~~~ 606 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN--------------GPYTELEQHLTAKFQEKEPE---LIALSK 606 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--------------TTCCHHHHHHHHHHHTTHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHH---HHHHHC
T ss_conf 9999999999887654132588899999999998750--------------47668999999999999999---987630
Q ss_pred HCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHH
Q ss_conf 11232115999999998664--49980689823299999999998525------------99199997999988999999
Q 001524 747 QHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRIDGTTKASDRVKIV 812 (1060)
Q Consensus 747 ~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~ridG~~s~~eR~~iI 812 (1060)
.....++|+..|.++|.+.. ..++|+||||+++.+++.|...|... |..+..+||+++..+|.+++
T Consensus 607 ~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l 686 (797)
T 4a2q_A 607 DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686 (797)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 78889959999999999985058997089997958999999999974756466552189844775457898999999999
Q ss_pred HHHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 98606-99965899933776434585567989990999991135455343323099674999999319999999999999
Q 001524 813 NDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 891 (1060)
Q Consensus 813 ~~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~ 891 (1060)
+.|++ +... +|++|+++++|||++.++.||+||+||||..+.|++|| +| .+++.+|+|++.++++++ +..+.
T Consensus 687 ~~F~~~g~~~--vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~ 759 (797)
T 4a2q_A 687 DAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNR 759 (797)
T ss_dssp -------CCS--EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHH
T ss_pred HHHHCCCCCE--EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-CC---CCCCEEEEEEECCCHHHH-HHHHH
T ss_conf 9851369704--99974805447975108989994899988999985388-87---878659999728768899-99888
Q ss_pred HHHHHHHHHHCC
Q ss_conf 998799998205
Q 001524 892 FKGGLFKTATEH 903 (1060)
Q Consensus 892 ~K~~l~~~~~~~ 903 (1060)
.|..++..++..
T Consensus 760 ~ke~~~~~~i~~ 771 (797)
T 4a2q_A 760 YKEEMMNKAVEK 771 (797)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=345.87 Aligned_cols=251 Identities=31% Similarity=0.475 Sum_probs=222.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCCHHH
Q ss_conf 998521000355764422346865138999638999999999999669876203------79958999999998219134
Q 001524 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF------DGSPLAALTILKKICDHPLL 703 (1060)
Q Consensus 630 ~LRR~k~dv~~~~~~~~~~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~~------~~~~l~~l~~Lrkic~hP~L 703 (1060)
-+||+|.+|.. .||++.+.+++|+|++.|+.+|+.++......... ....+..++.||++|+||.+
T Consensus 13 ~~rr~k~~v~~--------~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l 84 (271)
T 1z5z_A 13 GLVPRGSHMAS--------DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPAL 84 (271)
T ss_dssp -----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHH
T ss_pred CCCCCHHHHHH--------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 64164877875--------1999779999818999999999999999999997403521288999999999998489988
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
Q ss_conf 53556666641023689947899999999889654211245531123211599999999866449980689823299999
Q 001524 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783 (1060)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 783 (1060)
+.... .....++|+..|.++|..+...++|+||||+++.+++
T Consensus 85 ~~~~~--------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~ 126 (271)
T 1z5z_A 85 LKGGE--------------------------------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGK 126 (271)
T ss_dssp HHCSC--------------------------------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HCCCC--------------------------------------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 46873--------------------------------------2234689999999999999867996999955199999
Q ss_pred HHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 999998525-9919999799998899999998606999658999337764345855679899909999911354553433
Q 001524 784 LIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862 (1060)
Q Consensus 784 ~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa 862 (1060)
.|...|... |+++.+++|+++..+|+++++.|++++..+|+|++|++||+||||+.|++||+||+||||..+.||+||+
T Consensus 127 ~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~ 206 (271)
T 1z5z_A 127 IIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRV 206 (271)
T ss_dssp HHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999987339847999799999999999998328999978997223515886764489999979999851899999852
Q ss_pred HHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCC
Q ss_conf 2309967499999931999999999999999879999820531-024579988999876999998
Q 001524 863 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGF 926 (1060)
Q Consensus 863 ~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~~~~~~~ 926 (1060)
||+||+++|+||+|++.+|+||+|++++..|..++..+++..+ ....++.+||.+||++..+|+
T Consensus 207 ~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 271 (271)
T 1z5z_A 207 YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGGY 271 (271)
T ss_dssp -------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSCCCTTC
T ss_pred CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 32389985699998549889999999999999999999716705432389999999965588999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=336.17 Aligned_cols=465 Identities=13% Similarity=0.122 Sum_probs=274.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEEC-CCCHHHHHHHHHHHCC
Q ss_conf 599876899999999996237987099818997268999999999823168---994499967-2009999999998157
Q 001524 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAP-KTLLSHWIKELTAVGL 468 (1060)
Q Consensus 393 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTiqaiall~~l~~~~~---~k~vLIV~P-~sLl~qW~~El~k~~~ 468 (1060)
...|+|||.+++.++.. ++++|++++||+|||++++..+........ .+++||||| ..|+.||..++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 77877999999999974----99899981999718999999999999837456798699992889999999999998724
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf --973899806343113578899650787999508999711111238876567689887770389992897579962299
Q 001524 469 --SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546 (1060)
Q Consensus 469 --~~~v~~~~g~~~~~r~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~IIiDEAH~iKN~~sk~ 546 (1060)
+..+..++|....... ........+|+|+||+.+......... .....|++||+||||++.+.....
T Consensus 81 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~---------~~~~~~~~vViDEah~~~~~~~~~ 149 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYN 149 (556)
T ss_dssp GGTCCEEECCCC-----C--HHHHHHHCSEEEECHHHHHHHHHSSSC---------CCSTTCSEEEEETGGGCSTTSHHH
T ss_pred CCCCEEEEEECCCCCCHH--HHHHHCCCCEEEECHHHHHHHHHHCCC---------CCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 069459998289874222--898617999999889999999983750---------250307799998875358864599
Q ss_pred HHHHHC--------CCCCCEEEEECCCCCCCH-------HHHHHHHHHHCCCC----CCCHHHHHHHHHCCCCCCCCCC-
Q ss_conf 999982--------887734886368998998-------99999986427988----8994789988200101478831-
Q 001524 547 AKSLLE--------IPSAHRIIISGTPIQNNL-------KELWALFNFCCPEL----LGDNKWFKEKYELPILRGNDKH- 606 (1060)
Q Consensus 547 ~kal~~--------l~s~~RilLTGTPiqN~l-------~EL~sLl~fl~p~~----l~~~~~F~~~f~~pi~~~~~~~- 606 (1060)
...... -+..++++|||||.+++. ..+..+...+.+.. ......+...+..|........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 150 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCC
T ss_conf 99999998530136888769999478566751669999999999998539848433320267787427998537998278
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----------EEEEEECCCHHHHHHHHHHH
Q ss_conf -005888832899999999866899985210003557644223468651-----------38999638999999999999
Q 001524 607 -ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN-----------EMIVWLRLTSCQRQLYEAFL 674 (1060)
Q Consensus 607 -~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~Lp~k~-----------e~vv~~~Ls~~Q~~lY~~~l 674 (1060)
...............+...+.. ......+.... ...+.... ......+....+..+|..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRT----IYSVDTLSQNS---KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 302 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH----HCC------------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 76775999999999999999988----86320121033---334433567899999999877640543201678999999
Q ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66987620--------3799589999999982191345355666664102368994789999999988965421124553
Q 001524 675 NSEIVLSA--------FDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 746 (1060)
Q Consensus 675 ~~~~~~~~--------~~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 746 (1060)
........ ...........++..+.. .........+......+....... .....
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ 365 (556)
T 4a2p_A 303 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTN--------------VKNGPYTELEQHLTAKFQEKEPEL---IALSK 365 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------------HHHSCCCHHHHHHHHHHHTTHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHCCCCHHHHHHHHHHHHHHHHH---HHHCC
T ss_conf 9999999999999886112078999999999999--------------873379878999999876678876---42103
Q ss_pred HCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHH
Q ss_conf 11232115999999998664--49980689823299999999998525------------99199997999988999999
Q 001524 747 QHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRIDGTTKASDRVKIV 812 (1060)
Q Consensus 747 ~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~ridG~~s~~eR~~iI 812 (1060)
.....++|+..|.++|.+.. ..++|+||||+++.+++.|...|... |..+..+||+++..+|.+++
T Consensus 366 ~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~ 445 (556)
T 4a2p_A 366 DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 445 (556)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 78999969999999999983479985499997658999999999985877550001478736776556566989999999
Q ss_pred HHHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 98606-99965899933776434585567989990999991135455343323099674999999319999999999999
Q 001524 813 NDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 891 (1060)
Q Consensus 813 ~~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~ 891 (1060)
+.|++ +... +|++|.++++|||++.++.||+||+||||..+.|++|| + |.+++.+|.|++.++++++ +..+.
T Consensus 446 ~~F~~~g~~~--vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~~l~~~~~~~~~-~~~~~ 518 (556)
T 4a2p_A 446 DAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNR 518 (556)
T ss_dssp --------CC--EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHH
T ss_pred HHHCCCCCEE--EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-C---CCCCCEEEEEEECCCHHHH-HHHHH
T ss_conf 9840469658--99976704337775217889991899978899886387-8---7888418999827636777-77557
Q ss_pred HHHHHHHHHHCC
Q ss_conf 998799998205
Q 001524 892 FKGGLFKTATEH 903 (1060)
Q Consensus 892 ~K~~l~~~~~~~ 903 (1060)
.|..++..++..
T Consensus 519 ~k~~~~~~~i~~ 530 (556)
T 4a2p_A 519 YKEEMMNKAVEK 530 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
Done!