Your job contains 1 sequence.
>001526
MYLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDV
DNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKA
KTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSK
GNLPEYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVADEEQETENV
GIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKK
NEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVN
VLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILG
DDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCV
KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK
NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL
RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL
RLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML
NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK
MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA
DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA
TEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLG
IAGVSHHSLLFSKTARVQVVQEEEEATRRKGTAFVGNSSSSYLVARNVDGAEYAFNPRDI
KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKAWLVGL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001526
(1060 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 2643 3.5e-288 2
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 1204 1.9e-122 1
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 1197 1.1e-121 1
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 1196 1.3e-121 1
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 1196 1.3e-121 1
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 1193 2.8e-121 1
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 1187 1.2e-120 1
UNIPROTKB|B5MDQ0 - symbol:ERCC6L "FLJ20105 protein, isofo... 1111 1.4e-112 1
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 1081 2.7e-111 2
DICTYBASE|DDB_G0288873 - symbol:pich "polo-interacting ch... 636 3.0e-111 2
UNIPROTKB|F1NCD0 - symbol:ERCC6L "Uncharacterized protein... 978 1.7e-98 1
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 570 2.3e-87 3
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 537 1.6e-86 3
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 550 7.2e-86 4
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 549 1.1e-85 2
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 542 3.5e-85 3
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 536 5.5e-85 2
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 541 1.0e-83 3
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 398 6.2e-82 4
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 415 1.1e-80 3
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 377 3.1e-74 4
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 400 2.3e-66 2
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 689 2.2e-64 2
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 661 2.6e-64 1
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 676 7.6e-64 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 438 7.1e-63 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 438 7.1e-63 2
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 401 1.2e-62 2
ASPGD|ASPL0000018137 - symbol:AN4187 species:162425 "Emer... 664 4.2e-62 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 636 1.5e-61 1
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 636 1.5e-61 1
RGD|1564130 - symbol:Btaf1 "BTAF1 RNA polymerase II, B-TF... 659 4.1e-61 1
UNIPROTKB|F1N507 - symbol:Bt.112326 "Uncharacterized prot... 661 3.1e-60 2
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 364 3.8e-60 3
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 649 5.3e-60 1
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 661 6.6e-60 2
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 607 1.2e-59 2
ZFIN|ZDB-GENE-021025-1 - symbol:btaf1 "BTAF1 RNA polymera... 651 1.4e-59 2
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 658 1.9e-59 2
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 657 2.0e-59 2
FB|FBgn0022787 - symbol:Hel89B "Helicase 89B" species:722... 643 2.6e-59 1
WB|WBGene00010845 - symbol:M03C11.8 species:6239 "Caenorh... 635 5.2e-59 2
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 648 1.2e-58 2
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 626 1.2e-58 2
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 359 1.2e-58 2
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 378 1.0e-57 4
DICTYBASE|DDB_G0286219 - symbol:DDB_G0286219 "putative TB... 381 1.3e-57 3
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 612 5.0e-57 1
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 611 1.3e-56 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 344 2.0e-56 3
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 606 2.7e-56 1
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 356 3.2e-56 3
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 344 3.2e-56 3
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 603 5.8e-56 1
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 378 6.5e-56 3
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 584 6.7e-56 1
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 602 6.9e-56 1
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 350 9.8e-56 3
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 337 1.5e-55 4
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 579 2.4e-55 1
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 344 5.8e-55 3
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 364 6.2e-55 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 398 7.3e-55 4
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 340 7.6e-55 3
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 361 1.1e-54 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 327 1.2e-54 3
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 343 1.2e-54 2
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 341 1.8e-54 2
SGD|S000001934 - symbol:IRC5 "Putative ATPase containing ... 394 1.9e-54 2
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 375 2.1e-54 3
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 339 2.6e-54 3
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 364 2.7e-54 2
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 330 2.7e-54 2
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 324 3.3e-54 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 592 3.9e-54 3
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 368 4.7e-54 4
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 341 4.7e-54 2
FB|FBgn0032157 - symbol:Etl1 "Etl1 homologue" species:722... 578 5.8e-54 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 351 7.5e-54 3
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 344 2.2e-53 3
POMBASE|SPAC20G8.08c - symbol:fft1 "fun thirty related pr... 581 2.2e-53 1
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 308 2.6e-53 3
UNIPROTKB|F1NYG8 - symbol:F1NYG8 "Uncharacterized protein... 328 2.8e-53 3
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 568 4.4e-53 1
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 340 4.7e-53 2
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 408 4.9e-53 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 340 7.6e-53 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 353 9.0e-53 2
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 353 9.0e-53 2
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 332 1.1e-52 3
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 327 1.1e-52 4
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 321 1.2e-52 4
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 319 2.0e-52 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 342 2.0e-52 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 342 2.0e-52 2
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 322 3.1e-52 3
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 322 3.1e-52 3
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 354 3.9e-52 3
CGD|CAL0001763 - symbol:orf19.1871 species:5476 "Candida ... 323 4.6e-52 3
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 364 5.8e-52 4
WARNING: Descriptions of 465 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 2643 (935.4 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
Identities = 528/769 (68%), Positives = 610/769 (79%)
Query: 290 ETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE--EYDDEDDCVIVSGKLVVNRPDRRD 347
+ K+ Q K V + R G+S + R+ E DD+DDC+I+SGK
Sbjct: 277 QCKEVDQSMKTTRHIEVSEKIRTVGRSNAAKLRDLDEDDDDDDCLILSGKKAAEM----- 331
Query: 348 GKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWL 407
K+NK A S N D+ LEDEGSITL+G +Y LPGKI ML+PHQREGL WL
Sbjct: 332 -KINKPARS--YNAKRHGYDERSLEDEGSITLTGLNLSYTLPGKIATMLYPHQREGLNWL 388
Query: 408 WSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467
WSLH QGKGGILGDDMGLGKTMQIC FLAGLFHS+LIKRALVVAPKTLL HW+KEL VG
Sbjct: 389 WSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVG 448
Query: 468 LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 527
LS REY+GT K R+Y+L ++LQ KG+LLTTYDIVRNN+K+L+G +DE +D
Sbjct: 449 LSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNK 508
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
WDYMILDEGHLIKNP+TQRAKSLLEIPS+HRIIISGTPIQNNLKELWALFNF CP LLGD
Sbjct: 509 WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGD 568
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
WFK+ YE ILRG DK+A DRE+RIGS VAK LRE IQP+FLRRLK+EVF +D TS
Sbjct: 569 KNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSK 628
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707
LSKK+E++VWLRLT+CQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR
Sbjct: 629 --LSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 686
Query: 708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP 767
AAEDVL+GMDS L E+A +AE+LAMHIAD + DDFQ ++D+ISCK+SFI+SLL+ LIP
Sbjct: 687 AAEDVLEGMDSTLTQEEAGVAERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLENLIP 746
Query: 768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827
EGH VLIFSQTRKMLNLIQ+S+ S GY FLRIDGTTKA DR+K V +FQEG VAPIFLLT
Sbjct: 747 EGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLT 806
Query: 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ KDV+VYRLMT TVEEKIY
Sbjct: 807 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIY 866
Query: 888 RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDE 947
RKQ++KGGLFKTATEHKEQIRYFSQQDLREL SLPK GFDVS TQQQL+EEH +Q +DE
Sbjct: 867 RKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKGGFDVSPTQQQLYEEHYNQIKLDE 926
Query: 948 SLEAHIQFLDTLGIAGVSHHSLLFSKXXXXXXXXXXXXXXXXKGTAFV-GNSSSSYLVAR 1006
LE+H++FL+TLGIAGVSHHSLLFSK + TA + G +S+S
Sbjct: 927 KLESHVKFLETLGIAGVSHHSLLFSKTAPIQAIQKDEEEQIRRETALLLGRASASISQDT 986
Query: 1007 NVDGAEYAFNPRDIKLNKKSS-SPKNEAKLKESDIKERIKRLSQLISNK 1054
++GA+YAF P+D+ L+K+ + SP ++ +L ES IK R+ RL+ L+ NK
Sbjct: 987 VINGADYAFKPKDVNLDKRINISPVDDKELSESVIKARLNRLTMLLQNK 1035
Score = 149 (57.5 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
Identities = 70/270 (25%), Positives = 112/270 (41%)
Query: 37 DEE-KPQKVKIEGRRRLCKVSSRD--VDNTENRAVVDDEPNFSDITDFDSP-LQSKTVSA 92
DEE K +K+ GRRRLCK ++ D ++ +VD T DS + +K S
Sbjct: 41 DEETKKSMIKLAGRRRLCKALPKEDEADGYDDPDLVDFYSPVKGETSLDSAGIGNKFTSW 100
Query: 93 MVNIESRAVIDDGPKFSDITVFDSP-PKAKTVSENDNYKGGNEIRDILNDLSARLEILSI 151
+ E+ + P FS IT F SP P+ K E G NEI IL+DL+++L +SI
Sbjct: 101 DESKEANTELAGEPNFSIITDFCSPSPQLKQKEEMQGDGGRNEIMGILDDLTSKLGTMSI 160
Query: 152 DKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYXXXXXXXXXXXXXXXXXXGVTKDNV 211
K++ ++ +DF G Q K + + VT N
Sbjct: 161 QKKKDSQS----NDFDAC---GVKSQVDKFDFEDAKSSFSLLSDLSKSSPDV--VTTYNA 211
Query: 212 GGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEE 271
G V S+ D+ + K EEQ ++ + N S R F+ N +
Sbjct: 212 G--VNSIKDK--QGKSGFAIREEQTSKEFSREWEERISNVGKQNSYSGRH-FDDNSEDNR 266
Query: 272 DGGSLSEVEGD-EHLSRVHETKKHHQRQKK 300
G +L + + + + +T +H + +K
Sbjct: 267 QGYNLDRGKSQCKEVDQSMKTTRHIEVSEK 296
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 265/611 (43%), Positives = 382/611 (62%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N LF HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+QI FL+G+F +
Sbjct: 84 SGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDAS 143
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P L++ W+KE +++ + G R L + Q GV++TTY
Sbjct: 144 LVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQ 203
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ NN + L SSF E +WDY+ILDE H IK ST+ A IP+++R++++
Sbjct: 204 MLINNWQQL--SSFRGQEF-----VWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLT 256
Query: 563 GTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GTPIQNNL+ELW+LF+F C LLG K FK +YE PI R +K A EK +G +++
Sbjct: 257 GTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISEN 316
Query: 622 LRERIQPYFLRRLKNEV-----------FHE-----DDVTSSATLSKKNEMIVWLRLTSC 665
L I+PYFLRR K +V +E D + +LS+KN++I+W+RL
Sbjct: 317 LMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPL 376
Query: 666 QRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 723
Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ RA + G S +
Sbjct: 377 QEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436
Query: 724 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783
+ + + HI V + D E+ S K+ F++ LL +L EGH L+FSQ+R++LN
Sbjct: 437 EGEDSPDVD-HIDQVTD-DTLMEE----SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILN 490
Query: 784 LIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADR 842
+I+ + ++ +K LRIDGT T +R K +N FQ+ +FLLT+QVGG+GLTLT A R
Sbjct: 491 IIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATR 550
Query: 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT- 901
V++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T
Sbjct: 551 VVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 610
Query: 902 EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGI 961
E K RYFS+Q+LREL ++ + S+TQ QL H Q D L+ HI +L +LGI
Sbjct: 611 EKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGI 668
Query: 962 AGVSHHSLLFS 972
AG+S H L+++
Sbjct: 669 AGISDHDLMYT 679
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 261/613 (42%), Positives = 385/613 (62%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N LF +Q+EG+ +L+SL+ G+ GGIL DDMGLGKT+QI FL+G+F +
Sbjct: 62 SGLLLYRELHNQLFEYQKEGVAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDAS 121
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P +L+S W++E +++ + G R L + Q GV++TTY
Sbjct: 122 LVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLSRIQQRNGVIITTYQ 181
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ NN + L SS E +WDY+ILDE H IK ST+ A IP+ +RI+++
Sbjct: 182 MLINNWQQL--SSLNGREF-----VWDYVILDEAHKIKTSSTKSAICARAIPARNRILLT 234
Query: 563 GTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GTPIQNNL+ELW+LF+F C LLG K FK +YE PI R +K A EK +G +++
Sbjct: 235 GTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISEN 294
Query: 622 LRERIQPYFLRRLKNEV-----------FHEDDVTSSA-----TLSKKNEMIVWLRLTSC 665
L I+PYFLRR K EV E+D + A +LS+KN++I+W+RL
Sbjct: 295 LMAIIKPYFLRRTKEEVQKKKSSNPEVRLSEEDPDADAICEMPSLSRKNDLIIWIRLVPL 354
Query: 666 QRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDV-LDGMDSMLNP 722
Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ RA + + L + +
Sbjct: 355 QEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACQLLNLGAVRFSVQD 414
Query: 723 EDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782
E HI V+++ +E S K++F++ LL +L EGH L+FSQ+R++L
Sbjct: 415 EIEGEDSSGVDHIDQVSDETLMEE-----SGKMTFLMDLLKRLRDEGHQTLVFSQSRQIL 469
Query: 783 NLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD 841
N+++ + ++ +K LRIDGT T +R K ++ FQ+ +FLLT+QVGG+GLTLT A
Sbjct: 470 NILERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAAS 529
Query: 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 901
RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T
Sbjct: 530 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTT 589
Query: 902 -EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLG 960
+ K RYFS+Q+LREL ++ + F S TQ QL H Q D++L+ HI +L +L
Sbjct: 590 GDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHASQRRSDKNLDEHIAYLHSLR 647
Query: 961 IAGVSHHSLLFSK 973
IAG+S H L++++
Sbjct: 648 IAGISDHDLMYTR 660
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 262/613 (42%), Positives = 382/613 (62%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N LF HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+QI FL+G+F +
Sbjct: 106 SGLLLYRELHNQLFEHQKEGVAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDAT 165
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P L+S WIKE +++ + G+ R L + Q GV++TTY
Sbjct: 166 LVSHVLLIMPTNLISTWIKEFVKWTPGMRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQ 225
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ NN + L SS E +WDY+ILDE H IK ST+ A +P+ +RI+++
Sbjct: 226 MLINNWQQL--SSLNGQEF-----VWDYVILDEAHKIKTSSTKSAICARAVPARNRILLT 278
Query: 563 GTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GTPIQNNL+ELW+LF+F C LLG K FK +YE PI+R +K A EK +G +++
Sbjct: 279 GTPIQNNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISEN 338
Query: 622 LRERIQPYFLRRLKNEV-----------FHE-----DDVTSSATLSKKNEMIVWLRLTSC 665
L I+ +FLRR K EV F E D + +LS+KN++I+W+RL
Sbjct: 339 LMAIIKSHFLRRTKEEVQKKSSTPEEIRFSEKNPDGDAICKMPSLSRKNDLIIWIRLRPL 398
Query: 666 QRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDV-LDGMDSMLNP 722
Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ RA + L + +
Sbjct: 399 QEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARARHLLSLGSVKFSVQG 458
Query: 723 EDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782
E+ HI V + D E+ S K+ F++ LL +L EGH L+FSQ+R++L
Sbjct: 459 ENEGEDASDVDHIDHVTD-DTLMEE----SGKMIFLIELLRRLRDEGHQTLVFSQSRQIL 513
Query: 783 NLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD 841
N+I+ + ++ +K LR+DGT T +R K ++ FQ+ +FLLT+QVGG+GLTLT A
Sbjct: 514 NIIERLLKNRHFKILRVDGTVTHLVEREKRIHLFQQNKDYSVFLLTTQVGGVGLTLTAAT 573
Query: 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 901
RV++ DP+WNP+TD Q+VDR YRIGQK+++VVYRL+TCGTVEEKIYR+Q+FK L + T
Sbjct: 574 RVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKIYRRQVFKDSLIRQTT 633
Query: 902 -EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLG 960
+ K RYF++Q+LREL ++ + F S TQ QL H Q D+ L+ HI +L +LG
Sbjct: 634 GDKKNPFRYFTKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKILDEHIAYLHSLG 691
Query: 961 IAGVSHHSLLFSK 973
IAG+S H L++++
Sbjct: 692 IAGISDHDLMYTR 704
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 265/629 (42%), Positives = 394/629 (62%)
Query: 368 DSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLG 426
+ + E+E S +L ++ LF HQ+EG+ +L+SL+ G KGGIL DDMGLG
Sbjct: 68 EQLAEEEDDEFTDVCNSGLLLYRELYEKLFEHQKEGIAFLYSLYKNGRKGGILADDMGLG 127
Query: 427 KTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE 486
KT+QI FL+G+F + L+ L++ P L++ W+KE +++ + G+ R
Sbjct: 128 KTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFAKWTPGMRVKTFHGSSKNERIRN 187
Query: 487 LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546
L + Q GV++TTY ++ NN + L +SF + +A +WDY+ILDE H IK+ ST+
Sbjct: 188 LTRIQQRNGVVITTYQMLLNNWQQL--ASF-NGQA----FVWDYVILDEAHKIKSASTKS 240
Query: 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDK 605
A +P+++R++++GTPIQNNL+ELW+LF+F C LLG K FK +YE PI+R +K
Sbjct: 241 AVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPIIRAREK 300
Query: 606 HALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHE----------------DDVTSSAT 649
A EK +G +++ L E I+PYFLRR K EV + +D+ +
Sbjct: 301 DATPGEKALGFKMSENLMEIIKPYFLRRTKEEVHMKKADKPEVRPGEKNSGVEDICEMLS 360
Query: 650 LSKKNEMIVWLRLTSCQRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKR 707
L++KN++IVW+RL Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ R
Sbjct: 361 LTRKNDLIVWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSAR 420
Query: 708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP 767
A +L+ + ED E A ++ + D + S K+ F+++LL++L
Sbjct: 421 ACH-LLNLGTVTFSAEDENEQED-ASNMGSIDHLSDNALMQE--SGKMIFLMALLERLQD 476
Query: 768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLL 826
EGH L+FSQ+R++LN+I+ + +K +K LRIDGT T +R K + FQ+ +FLL
Sbjct: 477 EGHQTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLL 536
Query: 827 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
T+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKI
Sbjct: 537 TTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 596
Query: 887 YRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDV--SLTQQQLHEEHGDQH 943
YR+Q+FK L + T + K RYF++Q+L+EL ++ G D+ S TQ QL H Q
Sbjct: 597 YRRQVFKDSLIRQTTGDKKNPFRYFTKQELKELFTV---G-DLLNSATQMQLQCLHAAQR 652
Query: 944 NMDESLEAHIQFLDTLGIAGVSHHSLLFS 972
DE L+ HI +L +LGIAG+S H L+F+
Sbjct: 653 KSDEKLDEHIAYLHSLGIAGISDHDLMFT 681
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 265/614 (43%), Positives = 388/614 (63%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ LF HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+QI FL+G+F +
Sbjct: 85 SGLLLYRELYEKLFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMFDAS 144
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P L++ W+ E +++ + G+ R L + Q GV++TTY
Sbjct: 145 LVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQ 204
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ NN + L +SF + +A +WDY+ILDE H IK+ ST+ A IP+++R++++
Sbjct: 205 MLLNNWQQL--ASF-NGQA----FVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLT 257
Query: 563 GTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GTP+QNNL+ELW+LF+F C LLG K FK +YE PI+R +K A EK +G +++
Sbjct: 258 GTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISEN 317
Query: 622 LRERIQPYFLRRLKNEV-----------FHEDDVTSSA-----TLSKKNEMIVWLRLTSC 665
L E I+PYFLRR K EV E + A +L++KN++IVW+RL
Sbjct: 318 LMEIIKPYFLRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLARKNDLIVWIRLLPL 377
Query: 666 QRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 723
Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ RA +L+ + + +
Sbjct: 378 QEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACR-LLNLGTATFSAQ 436
Query: 724 DAALAEKLA-MHIAD-VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781
D E ++ M+ D + +K QE S K+ F++SLL++L EGH L+FSQ+ K+
Sbjct: 437 DENEQEDVSNMNSIDHLPDKTLIQE-----SGKMIFLMSLLERLQDEGHQTLVFSQSIKI 491
Query: 782 LNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 840
LN+I+ + +K +K LRIDGT T +R K + FQ+ +FLLT+QVGG+GLTLT A
Sbjct: 492 LNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAA 551
Query: 841 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 900
RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L +
Sbjct: 552 TRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 611
Query: 901 T-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTL 959
T E K RYF++Q+L+EL ++ S TQ QL H Q DE L+ HI +L L
Sbjct: 612 TGEKKNPFRYFTKQELKELFTVGD--LQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLL 669
Query: 960 GIAGVSHHSLLFSK 973
GIAG+S H L+F++
Sbjct: 670 GIAGISDHDLMFTR 683
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 260/614 (42%), Positives = 386/614 (62%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N L+ +Q+EG+ +L+SL+ G+ GGIL DDMGLGKT+QI FL+G+F +
Sbjct: 84 SGLLLYQELHNQLYEYQKEGIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDAS 143
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P +L+S W++E +++ + G R L + Q GV++TTY
Sbjct: 144 LVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQ 203
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ NN + L SS E +WDY+ILDE H IK+ ST+ A IP+++RI+++
Sbjct: 204 MLINNWQQL--SSLNGQEF-----LWDYVILDEAHKIKSSSTKSAICARAIPASNRILLT 256
Query: 563 GTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GTPIQNNL+ELW+LF+F C LLG + FK +YE PI R +K A EK +G +++
Sbjct: 257 GTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISEN 316
Query: 622 LRERIQPYFLRRLKNEVFHEDD----------------VTSSATLSKKNEMIVWLRLTSC 665
L I+PYFLRR K EV + + +LS+KN++I+W+RL
Sbjct: 317 LMAIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRLVPL 376
Query: 666 QRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 723
Q ++Y F++ + + L SPLA L +LKK+CDHP LL+ RA +L+ + + +
Sbjct: 377 QEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARAC-GLLNLGAAKFSVQ 435
Query: 724 DAALAEKLAM--HIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 781
D E + HI +++ D E+ S K+ F++ LL KL EGH L+FSQ+R++
Sbjct: 436 DEIEGEDSSDVDHIDQISD-DTLMEE----SGKMLFLMDLLKKLRDEGHQTLVFSQSRRI 490
Query: 782 LNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 840
LN+I+ + ++ +K LRIDGT T +R K ++ FQ+ +FLLT+QVGG+GLTLT A
Sbjct: 491 LNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAA 550
Query: 841 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 900
RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L +
Sbjct: 551 SRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 610
Query: 901 T-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTL 959
T + K RYFS+Q+LREL ++ + F S TQ QL H Q D++L+ HI FL +L
Sbjct: 611 TGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSL 668
Query: 960 GIAGVSHHSLLFSK 973
IAG+S H L++++
Sbjct: 669 RIAGISDHDLMYTR 682
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 245/571 (42%), Positives = 354/571 (61%)
Query: 423 MGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT 482
MGLGKT+QI FL+G+F + L+ L++ P L++ W+KE +++ + G
Sbjct: 1 MGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDE 60
Query: 483 RQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542
R L + Q GV++TTY ++ NN + L SSF E +WDY+ILDE H IK
Sbjct: 61 RTRNLNRIQQRNGVIITTYQMLINNWQQL--SSFRGQEF-----VWDYVILDEAHKIKTS 113
Query: 543 STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILR 601
ST+ A IP+++R++++GTPIQNNL+ELW+LF+F C LLG K FK +YE PI R
Sbjct: 114 STKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITR 173
Query: 602 GNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV-----------FHE-----DDVT 645
+K A EK +G +++ L I+PYFLRR K +V +E D +
Sbjct: 174 AREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAIC 233
Query: 646 SSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV--LSAFDGSPLAALTILKKICDHPLL 703
+LS+KN++I+W+RL Q ++Y F++ + + L SPLA L +LKK+CDHP L
Sbjct: 234 EMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRL 293
Query: 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLD 763
L+ RA + G S + + + + HI V + D E+ S K+ F++ LL
Sbjct: 294 LSARACCLLNLGTFSAQDGNEGEDSPDVD-HIDQVTD-DTLMEE----SGKMIFLMDLLK 347
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAP 822
+L EGH L+FSQ+R++LN+I+ + ++ +K LRIDGT T +R K +N FQ+
Sbjct: 348 RLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYS 407
Query: 823 IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 882
+FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTV
Sbjct: 408 VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTV 467
Query: 883 EEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGD 941
EEKIYR+Q+FK L + T E K RYFS+Q+LREL ++ + S+TQ QL H
Sbjct: 468 EEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAA 525
Query: 942 QHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 972
Q D L+ HI +L +LGIAG+S H L+++
Sbjct: 526 QRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 556
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 1081 (385.6 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 248/639 (38%), Positives = 386/639 (60%)
Query: 363 DDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGD 421
+D D+ E+ ++ SG + + G + + L+ HQ+EG+ +L+SL+ G KGGIL D
Sbjct: 76 EDEEDEEEEEEFVNVNNSGLK---LYKG-LYDKLYDHQKEGVAFLYSLYRDGRKGGILAD 131
Query: 422 DMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVK 481
DMGLGKT+Q+ FL+G++ + L L+V P +L+ +W++E +++E+ G+
Sbjct: 132 DMGLGKTIQVISFLSGMYDAELANHTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKT 191
Query: 482 TRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541
R L+ + + GV++TTY ++ NN + L GS+ G + WDY+ILDE H IK
Sbjct: 192 ERNRNLERIQRKGGVIITTYQMLINNYEQL-GSN------GHREFKWDYVILDEAHKIKT 244
Query: 542 PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPIL 600
ST+ AKS IP+ +R++++GTP+QNNL+E+WALF+F C LLG +K FK +YE PI
Sbjct: 245 SSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSKTFKTEYENPIT 304
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV----------FHEDDVTSSA-- 648
R +K A EK +G +++ L + I+PYFLRR K +V F E++ +
Sbjct: 305 RAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQKKLKLEEGFEEEEDQENKCP 364
Query: 649 ---------TLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI-LKKIC 698
+L++KN++IVW L+S Q +Y F++ + + + + + K
Sbjct: 365 NAREGVEMPSLTRKNDLIVWTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKL 424
Query: 699 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNI--SCKIS 756
L + A L G++ D+ L A V++ D+ + H I S K+
Sbjct: 425 CDHPRLLSQRAVIQL-GLE---RGSDSELVHSDESESA-VSQIDNISD-HTLIEESGKLQ 478
Query: 757 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDF 815
F++SL++ L EGH LIFSQ+RKML++++ + ++ ++ LR+DGT T+ ++R K ++ F
Sbjct: 479 FVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLF 538
Query: 816 QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
Q IFLLT+QVGG+G+TLT A+RV++ DP+WNP+TD Q+VDRAYRIGQ ++V++YR
Sbjct: 539 QTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYR 598
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L+TCGTVEEKIYR+Q+FK L + T + K RYFS+Q+LREL L + S TQQQ
Sbjct: 599 LITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL--EDTRSSSTQQQ 656
Query: 935 LHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 973
L H D SL+ HI L ++ + G+S H L+F+K
Sbjct: 657 LQAMHAQSRRSDTSLDHHIARLHSMEMFGISDHDLMFTK 695
Score = 38 (18.4 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 228 DDVADEEQETENVGI---GLK 245
+D DEE+E E V + GLK
Sbjct: 76 EDEEDEEEEEEFVNVNNSGLK 96
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 636 (228.9 bits), Expect = 3.0e-111, Sum P(2) = 3.0e-111
Identities = 148/329 (44%), Positives = 200/329 (60%)
Query: 651 SKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLLTKRA 708
++KN+ +VW +L Q +LY FL S+ V A + SPLAALT+LKKICDHP LL +
Sbjct: 717 TRKNDFVVWTKLADSQIELYRTFLESDEVKDALNKTQSPLAALTVLKKICDHPHLLREEM 776
Query: 709 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE 768
LD M +L+ + + I + N S K +L LL L +
Sbjct: 777 KMISLDEMKDLLSKVGGS-----SRSINSLV----------NNSGKFQLLLKLLPNLHQD 821
Query: 769 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLT 827
GH VL+FSQ+ KML + + G +LRIDG+ ++ + + + D D++ F++T
Sbjct: 822 GHRVLMFSQSVKMLEDFEILLDHLGLTYLRIDGSISSTKKRQEIIDLYNTDMSYFAFIMT 881
Query: 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
QVG LGL LT ADRV+++DP+WN + DNQ+VDRAYRIGQKKDVVVYRLM+CGT+EEKIY
Sbjct: 882 IQVGALGLNLTSADRVLILDPSWN-TIDNQAVDRAYRIGQKKDVVVYRLMSCGTIEEKIY 940
Query: 888 RKQIFKGGLFKTATEH--KEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNM 945
RKQ+FKG L KT + Q RYFS DLRE+ +L ++S+TQQQL H
Sbjct: 941 RKQVFKGSLMKTMLNNTMSGQHRYFSSNDLREMFTLDDT--NISVTQQQLETLHSKNRKT 998
Query: 946 DESLEAHIQFLDTLGIA-GVSHHSLLFSK 973
L+ H++FL LG+ GVS H LLFS+
Sbjct: 999 SPELDEHLKFLLGLGMVFGVSDHDLLFSE 1027
Score = 546 (197.3 bits), Expect = 3.0e-111, Sum P(2) = 3.0e-111
Identities = 170/633 (26%), Positives = 289/633 (45%)
Query: 46 IEGRRRLCKVS-SRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNI---ESRAV 101
I + R+ K+ D + ++ + S T + ++ T + N+ +++
Sbjct: 27 IANKSRIKKIDIDLDSEEESEEEIISAKKKSSTTTTTKTTAKTTTTATKTNLKDNQTKGS 86
Query: 102 IDD-GPKFSDITVF-DSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKT 159
D K SD+++ DS + + E+++ K + D +D ++E+ S + + +T
Sbjct: 87 FDKLTKKTSDLSICNDSEDEDEDEDEDNHQKVILDESD--SDEKKKVEVKSSTLKSI-QT 143
Query: 160 VDPEDDFSRLVKNGDTGQ------GSKGNLPEYXXXXXXXXXXXXXXXXXXGVTKDNVGG 213
+ E++ ++ + + K +L + TK+
Sbjct: 144 PESEEESEEEEESEEESEEEVPIVNKKSSLSKKSIISESDDELLLQTVNKKSTTKEKTSK 203
Query: 214 -VVESVADEYEESKGDDVADEEQETENVGIG-LKRNEPRWVDNNLVSARESFESNLDGEE 271
+ + + DD D E+E I +K+ + + + S E D EE
Sbjct: 204 PTTTTTTTTTKTTTKDDTTDTEEEYSEEDIKPIKKPVSKVTKKQIQESEGSEEEISDSEE 263
Query: 272 DGGSLSEV-EGDEH------LSRVHE--TKKHHQRQKKNEPKRVHDGERFNGQSFVSGGR 322
D E E E L+R+ + T + KK + + E +S S +
Sbjct: 264 DIKQEEEKSESSEEDIKPKRLTRLRKPITTTLNTTTKKKPTLILSESEE-EEESDGSIYQ 322
Query: 323 EEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGP 382
EE DD + + + + ++ S +N Y + S+ + T S
Sbjct: 323 EESDDYQEEEEEEEEEEEEEEEEEEENIDPSKMVDQLNGFLKYKEKSIYINS---TKSKE 379
Query: 383 RSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR 442
+ + KI + L+ +QR+G+ WLW+L C+ GGILGDDMGLGKTMQIC FL +
Sbjct: 380 GKYFKMKDKIYDGLYWYQRDGVNWLWNLFCRHAGGILGDDMGLGKTMQICSFLNSMHSQG 439
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
I L+V P L+ HW+KE +R + G R L+ V+ + G+++TTY
Sbjct: 440 HISHTLLVMPVGLIEHWLKEFNRFNPKYLVRVFHGNNTIERNKSLKRVMNEGGIIITTYG 499
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
+V +N S+ E G IWDY+ILDEGH IK TQ +K++ + H+II++
Sbjct: 500 MVVSNVDSMI-------ENGRKSFIWDYVILDEGHKIKETKTQISKTMHRFNAKHKIILT 552
Query: 563 GTPIQNNLKELWALFNFCCPE-LLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
GT IQNNL+ELWALF++ C LLG + F + PI++ + + +K GSA+A++
Sbjct: 553 GTAIQNNLRELWALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDSSQDQKITGSAIAED 612
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN 654
LR I P+FLRR K +VF ++D S+ + N
Sbjct: 613 LRNIIAPHFLRREKKDVFKQNDQPSNNNNNNNN 645
Score = 42 (19.8 bits), Expect = 4.2e-58, Sum P(2) = 4.2e-58
Identities = 17/94 (18%), Positives = 42/94 (44%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVS--ARESFESNLDGEEDG 273
+S+A++ K D D E+E+E I K+ + + ++NL +
Sbjct: 25 KSIANKSRIKKIDIDLDSEEESEEEIISAKKKSSTTTTTKTTAKTTTTATKTNLKDNQTK 84
Query: 274 GSLSEV-EGDEHLSRVHETKKHHQRQKKNEPKRV 306
GS ++ + LS ++++ + + ++ ++V
Sbjct: 85 GSFDKLTKKTSDLSICNDSEDEDEDEDEDNHQKV 118
Score = 37 (18.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 899 TATEHKEQIRYFSQQDLRELLSLPKQ----GFD-VSLTQQQLHEEHGDQHNMDESLEAH 952
T+T H E+ R ++ + + P + G V++T HEE + N +E H
Sbjct: 1052 TSTSHLEKARPNKKKAITFSSNTPNKSQIRGRQYVTITDDYGHEEEDLEENEYPDIEFH 1110
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 218/518 (42%), Positives = 322/518 (62%)
Query: 372 EDEGS-ITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTM 429
ED+G+ + + G S +L G++ LF HQREG+ +L+ LH +G+ GGIL DDMGLGKT+
Sbjct: 57 EDDGNFVDVCG--SGLLLYGEMHAKLFQHQREGVAFLYRLHREGRPGGILADDMGLGKTI 114
Query: 430 QICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQY 489
QI FL+G+F S LI+ L++ P TL+S W+ E +++E+ GT R L+
Sbjct: 115 QIIAFLSGMFDSELIRHVLLIMPTTLVSSWLAEFARWTPGLRVKEFHGTSKTERTRNLEK 174
Query: 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 549
+ + G+++T+Y ++ NN K L G D +WDY+ILDE H IK PS + K
Sbjct: 175 IQRKNGIVITSYQMLINNWKQLASCH------GQD-FVWDYIILDEAHKIKCPSNKTTKC 227
Query: 550 LLEIPSAHRIIISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHAL 608
+ IP+ HR++++GTP+QNNL+E+W+LF+F C LLG K F+ +YE PI R +K A
Sbjct: 228 VYAIPAKHRLLLTGTPLQNNLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDAT 287
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVF--H---------EDDVTSSA----TLSKK 653
EK +G +++ L I+PYFLRR K+++ H ED SA +L++K
Sbjct: 288 VGEKALGLKISENLMTIIKPYFLRRTKDDIKKNHAEKSDTPLPEDPREPSAPVMPSLTRK 347
Query: 654 NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLLTKRAAED 711
N+ +VW+ L Q ++Y FL + V SPLA LT+LKK+CDHP LL+ RA
Sbjct: 348 NDFVVWVYLAPVQEKIYRNFLCLDHVKEVLTTTRSPLAELTVLKKLCDHPRLLSARACTQ 407
Query: 712 V-LDGMDSM-LNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 769
+ LDG + + + E A A I ++++ QE S K+ F++ LL +L EG
Sbjct: 408 LDLDGQEYLEQDHESEAAVLSGANKIDHLSDETLIQE-----SGKMLFLVGLLGRLREEG 462
Query: 770 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTS 828
H L+FSQ+RKML++I+ + S+ +K +RIDGT T ++R K +N FQ +FLLT+
Sbjct: 463 HRTLVFSQSRKMLDIIERVLSSRQFKIMRIDGTVTHLTEREKRINAFQSNKDYSVFLLTT 522
Query: 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
QVGG+G+TLT A+RV++ DP+WNP+TD Q+VDRAYRIG
Sbjct: 523 QVGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIG 560
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 570 (205.7 bits), Expect = 2.3e-87, Sum P(3) = 2.3e-87
Identities = 153/469 (32%), Positives = 238/469 (50%)
Query: 260 RESFESNLDGEEDGGSLSEVEGDEHLSRVHE-TKKHHQRQKKNEPKRVHDGERFNGQSFV 318
R E + +GEE G S +G+E + E E K + G+++ + V
Sbjct: 360 RPGAEGDTEGEESGSS--PTDGEEEEEQEEEGVAVLSSDDISYELKPLRKGQKYEKKVPV 417
Query: 319 SGGREEY----DDEDDCVIV--SGKLVVNRPDRRDGKLNKSAHSGLVNV-LDDYSDDSVL 371
+++ ++ED+ V G+ V RPD D K + L D + L
Sbjct: 418 QEIDDDFFPSSEEEDEAVEGRGGGRKVSRRPDDGDEDYYKQRLRRWNRLRLQD-KEKLKL 476
Query: 372 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQI 431
ED+ + + + +PG + LF +Q+ G+RWLW LHCQ GGILGD+MGLGKT+QI
Sbjct: 477 EDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQI 536
Query: 432 CGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VGLSAKIREYFGT 478
FLAGL +S++ R L+V P T++ W+KE I G+
Sbjct: 537 IAFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGS 596
Query: 479 CVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538
C ++ ++ ++ GVL+T+Y +R + D+ D W Y+ILDEGH
Sbjct: 597 CAHRKERLVRDIVHCHGVLITSYSYIR----------LMQDDISRHD--WHYVILDEGHK 644
Query: 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 598
I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG F E++ +P
Sbjct: 645 IRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFPGKLGTLPVFMEQFSVP 704
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 658
I G +A + + A LR+ I PY LRR+K+ DV S +L KNE ++
Sbjct: 705 ITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMSLSLPDKNEQVL 758
Query: 659 WLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
+ RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 759 FCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSGLVALRKICNHPDLFS 807
Score = 399 (145.5 bits), Expect = 2.3e-87, Sum P(3) = 2.3e-87
Identities = 80/170 (47%), Positives = 115/170 (67%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + SLL +G VL+FSQ+R+ML++++ + + Y +L++DGTT + R +
Sbjct: 832 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPL 891
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
+ + E +FLLT++VGGLG+ LT A+RVI+ DP WNPSTD Q+ +RA+RIGQKK V
Sbjct: 892 ITKYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQV 951
Query: 872 VVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
VYRL+T GT+EEKIY +QIFK L + +Q R+F DL EL +L
Sbjct: 952 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1001
Score = 42 (19.8 bits), Expect = 2.3e-87, Sum P(3) = 2.3e-87
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQETENVGI 242
++ G ++ +E S D +EEQE E V +
Sbjct: 358 EERPGAEGDTEGEESGSSPTDGEEEEEQEEEGVAV 392
Score = 37 (18.1 bits), Expect = 7.6e-87, Sum P(3) = 7.6e-87
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 267 LDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKK 300
L+ EE G+ + EG+E S + ++ +++++
Sbjct: 355 LEPEERPGAEGDTEGEESGSSPTDGEEEEEQEEE 388
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 537 (194.1 bits), Expect = 1.6e-86, Sum P(3) = 1.6e-86
Identities = 149/465 (32%), Positives = 229/465 (49%)
Query: 269 GEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFN----GQSFV------ 318
G++D S+ DEHL E + + Q + + D E N G+ V
Sbjct: 365 GQKDDSGESDYVPDEHLEP--EAVEEEEEQASSHAENDSDYELRNLSGKGKYLVKRDSKD 422
Query: 319 SGGREEY---DDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEG 375
+G +Y +E++ + K+ R D + + L D + SV E+
Sbjct: 423 AGNDTDYFPSSEEEEHTVGKRKVKRWRDDGDEDYYKQRLRKWQRERLKD-KERSVAEELS 481
Query: 376 SITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFL 435
+ + + +PG + LF +Q+ G+RWLW LHCQ GGILGD+MGLGKT+QI FL
Sbjct: 482 DESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL 541
Query: 436 AGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VGLSAKIREYFGTCVKT 482
AGL +S++ R ++V P T++ W+KE I G+
Sbjct: 542 AGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNK 601
Query: 483 RQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 542
+ ++ + G+L+T+Y +R + D D W Y+ILDEGH I+NP
Sbjct: 602 KVKLIREIASCHGILITSYSYIR----------LMQDNIHSYD--WHYVILDEGHKIRNP 649
Query: 543 STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRG 602
+ + + + HRII+SG+P+QNNLKELW+LF+F P LG F E++ +PI G
Sbjct: 650 NAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMG 709
Query: 603 NDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRL 662
+A + + A LR+ I PY LRR+K DV S +L KNE +++ RL
Sbjct: 710 GYSNASPVQVKTAYKCACVLRDAINPYLLRRMKA------DVKMSLSLPDKNEQVLFCRL 763
Query: 663 TSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
T QRQ+Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 764 TDEQRQVYQNFIDSKEVYQILNGDMQVFSGLVALRKICNHPDLFS 808
Score = 422 (153.6 bits), Expect = 1.6e-86, Sum P(3) = 1.6e-86
Identities = 113/312 (36%), Positives = 162/312 (51%)
Query: 736 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK 795
AD+ E D F + S K+ + SLL +GH VL F+Q+R+ML +++ + + Y
Sbjct: 820 ADLEEADQFG--YWKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYS 877
Query: 796 FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTD 855
+LR+DGTT + R ++ + E IFLLT++VGG+G+ LT ADRVI+ DP WNPSTD
Sbjct: 878 YLRMDGTTTIASRQPLITRYNEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTD 937
Query: 856 NQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDL 915
Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F DL
Sbjct: 938 TQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDL 997
Query: 916 REL--LSLP--KQGFDVSLTQQQLHEE-HGDQHNMDESLEAHIQFLDTL--GIAGVSHHS 968
EL LS P QG + S + +H + LE DTL G+ S
Sbjct: 998 YELFTLSSPDVSQGTETSAIFAGTGSDVQVPKHQLKRKLERPADD-DTLKGGLHLKKSSS 1056
Query: 969 LLFSKXXXXXXXXXXXXXXXXKGTA--FVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKS 1026
+SK T+ GN + + D AE A + + +K+
Sbjct: 1057 PKYSKSSSSHLTRHRANSSEAIETSEEAKGNLETFDQNSYAKDNAETATDINSVNKSKQE 1116
Query: 1027 SSPKNEAKLKES 1038
S + + L +S
Sbjct: 1117 SLERADISLSQS 1128
Score = 47 (21.6 bits), Expect = 1.6e-86, Sum P(3) = 1.6e-86
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 17 TNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDD--EPN 74
TN+ + +R D V+ + E++ +K+K + +R + ++ + N +D EP
Sbjct: 165 TNNKDI-NRKLDSVKRQKYNKEQQLKKIKAKQKRLQAVLGGTEILDKVNEIEFEDDEEPG 223
Query: 75 FSDITDFDSPLQ 86
S + P+Q
Sbjct: 224 PSSLGSMLMPIQ 235
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 550 (198.7 bits), Expect = 7.2e-86, Sum P(4) = 7.2e-86
Identities = 162/501 (32%), Positives = 253/501 (50%)
Query: 228 DDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSR 287
DD DE+++ E+ I P+ + N +E + DG E +E + R
Sbjct: 631 DDNDDEDEDDEDEKIDYDDRIPKELLN---IHKERWTD--DGNEKVYQKRLLEWKKKKIR 685
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE---DDCVIVSGKLVVNRPD 344
KK Q+++ ++ D N + + EE +DE + + + N
Sbjct: 686 -DRIKKMDQKKRLEVLEKYTDNLMKNNNNNNNNNNEENEDELYPSQYDLAEDEYLNNEKL 744
Query: 345 RRDGKLNKSAHSGLVNVLDDY----SDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQ 400
+ LNK+ ++ + + ++ +++ ++ D+ I + +P I LF +Q
Sbjct: 745 DEEAVLNKNNNNEIEKIFEEEEEKEAEEEIIGDDYEID-----ENFKIPFDIYKNLFEYQ 799
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKR-ALVVAPKTLLSHW 459
+RWL+ LHCQ GGI+GD+MGLGKT+QI FLA L +SR + AL+VAP TLLS+W
Sbjct: 800 VTCVRWLYELHCQETGGIVGDEMGLGKTVQIVSFLASLHYSRRLGGPALIVAPATLLSNW 859
Query: 460 IKELTA------VGLSAKIREYFGTCVKTRQYELQYVLQDKG-VLLTTYDIVRNNSKSLR 512
IKE VGL G + + ++ + +KG +LLTT+D +R N + L
Sbjct: 860 IKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRINQEILL 919
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
W+Y+ILDEGH I+NP + S ++ + HR+I+SG+PIQN L E
Sbjct: 920 KYH------------WEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTE 967
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
LW+LF+F P LG FK ++ LPI G +A + + A LR+ I PY LR
Sbjct: 968 LWSLFDFVFPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLISPYMLR 1027
Query: 633 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAA 690
R+K++V +L KNE ++ LT Q +LY FL+S + S DG + L
Sbjct: 1028 RVKSDVLK--------SLPSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSVLDGRRNALYG 1079
Query: 691 LTILKKICDHPLLLTKRAAED 711
+ ILKKIC+HP +L A+++
Sbjct: 1080 IDILKKICNHPDILHMDASDE 1100
Score = 400 (145.9 bits), Expect = 7.2e-86, Sum P(4) = 7.2e-86
Identities = 99/254 (38%), Positives = 146/254 (57%)
Query: 710 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKD--DFQEQHD--NI--SCKISFILSLLD 763
+ VLDG + L D + +K+ H D+ D D HD NI S K+ + ++L
Sbjct: 1067 KSVLDGRRNALYGID--ILKKICNH-PDILHMDASDEDRPHDYGNIERSAKLKVVETILP 1123
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESI-GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP 822
+G VL+F QTR+ML+++++ I S + +LR+DGTT R +V F
Sbjct: 1124 LWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNIDPSLF 1183
Query: 823 IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 882
IFLLT++VGGLGL LT A+RVI+ DP WNPSTD Q+ +R YRIGQKK V +YRL+T GT+
Sbjct: 1184 IFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTI 1243
Query: 883 EEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPK--QGFDV----SLTQQQLH 936
EEKIY +QI+K L + Q R+F + ++L + K +G + S + ++
Sbjct: 1244 EEKIYHRQIYKQFLTNKILKDPRQKRFFKSKHFKDLFTYTKNKKGSETGDIFSGSNSEIL 1303
Query: 937 EEHGDQHNMDESLE 950
EH + N S++
Sbjct: 1304 PEHMNDKNDKNSIK 1317
Score = 57 (25.1 bits), Expect = 3.8e-33, Sum P(3) = 3.8e-33
Identities = 28/162 (17%), Positives = 71/162 (43%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQETENVG-IGLKRNEPRWVDNNLVSARESFESN 266
KD+ E+ +E EE+ DD D++ + E+ I ++ NE D + E F
Sbjct: 551 KDDDNEKEENDENENEENDDDDDEDDDDDQEDYKEIEIEDNE----DEDEDEIEEEFTLK 606
Query: 267 LDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYD 326
+ + ++S + + V + + + +E +++ +R + ++ +E +
Sbjct: 607 KNKKSIKSTISNNKR-KRKQDVDDDDDNDDEDEDDEDEKIDYDDRIP-KELLNIHKERWT 664
Query: 327 DEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDD 368
D+ + + +L+ + + ++ K + VL+ Y+D+
Sbjct: 665 DDGNEKVYQKRLLEWKKKKIRDRIKKMDQKKRLEVLEKYTDN 706
Score = 53 (23.7 bits), Expect = 9.9e-33, Sum P(3) = 9.9e-33
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 232 DEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHET 291
D+ + E++ I N+ + +NN E E +++ EE+ S + S++
Sbjct: 448 DDFNDMESLNISEDDNDD-YNNNNNEEENEEDEIDIEKEENDESPPPKSSKKSNSKL--- 503
Query: 292 KKHHQRQKKNEPKRVHDGERFNGQSFVSG 320
KK + K++PK +D + N +SG
Sbjct: 504 KKISTPKSKSKPKNNNDDDLLNLDISLSG 532
Score = 49 (22.3 bits), Expect = 7.2e-86, Sum P(4) = 7.2e-86
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 61 DNTENRAVVDDEPNF---SDITDFDSPLQSK 88
+NT DD+PNF S+ T S LQSK
Sbjct: 47 NNTTTNKPKDDKPNFLRKSNPTASQSSLQSK 77
Score = 48 (22.0 bits), Expect = 7.2e-86, Sum P(4) = 7.2e-86
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 206 VTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLK 245
+ KD + ++ + +E+ K D+ +E+ T+N I +K
Sbjct: 249 IDKDTLASLISLIT--FEKKKLSDLKSQEKSTQNKIIEIK 286
Score = 46 (21.3 bits), Expect = 5.3e-32, Sum P(3) = 5.3e-32
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 220 DEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARE-SFESNLDGEEDGGSLSE 278
D +E D+ +E E EN +E D++ +E E N D +ED E
Sbjct: 546 DTNKEKDDDNEKEENDENENEENDDDDDEDD--DDDQEDYKEIEIEDNEDEDED-----E 598
Query: 279 VEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
+E + L + ++ K K + K+ D + N E+ DDED+
Sbjct: 599 IEEEFTLKKNKKSIKSTISNNKRKRKQDVDDDDDNDD-------EDEDDEDE 643
Score = 41 (19.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 567 QNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++ L L +L F + L D K ++ + I+ +K DREKRI K
Sbjct: 251 KDTLASLISLITFE-KKKLSDLKSQEKSTQNKIIEIKEKIKTDREKRINDQKRK 303
Score = 40 (19.1 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 276 LSEVEGDEHLS--RVHETKKHHQ--RQKK-NEPKRVHDGERFNGQS 316
LS+++ E + ++ E K+ + R+K+ N+ KR DG +G++
Sbjct: 268 LSDLKSQEKSTQNKIIEIKEKIKTDREKRINDQKRKPDGSNSSGEN 313
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 549 (198.3 bits), Expect = 1.1e-85, Sum P(2) = 1.1e-85
Identities = 158/474 (33%), Positives = 234/474 (49%)
Query: 260 RESFESNLDGEEDGGSLSEVEGDE----HLSRVHETK--KHHQRQKKNEPKRVHD----- 308
R E +GEE SE E E LS + H +RQKK + + D
Sbjct: 362 RPEAEGASEGEESEYLPSEEEPQEAAGADLSEDERRRVLSHRKRQKKVTVQDIDDDFFPS 421
Query: 309 -GERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSD 367
GE G GGR+ DD + + RR KL + + DD S+
Sbjct: 422 SGEEAEGTGGGGGGRKVARCRDD----GDEDYYKQRLRRWNKLRLQDKEKCLKLEDD-SE 476
Query: 368 DSVLE-DEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLG 426
+S E DEG + +PG + LF +Q+ G+RWLW LHCQ GGILGD+MGLG
Sbjct: 477 ESDAEFDEG----------FKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLG 526
Query: 427 KTMQICGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VGLSAKIR 473
KT+QI FLAGL +S++ R ++V P T++ W+KE I
Sbjct: 527 KTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAIL 586
Query: 474 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 533
G+ ++ ++ + G+L+T+Y +R + D+ D W Y+IL
Sbjct: 587 HETGSFTHKKEKLVRDIAHCHGILITSYSYIR----------LMQDDISRHD--WHYVIL 634
Query: 534 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKE 593
DEGH I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG F E
Sbjct: 635 DEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFME 694
Query: 594 KYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKK 653
++ +PI G +A + + A LR+ I PY LRR+K+ DV S +L K
Sbjct: 695 QFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMSLSLPDK 748
Query: 654 NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
NE +++ RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 749 NEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFS 802
Score = 399 (145.5 bits), Expect = 1.1e-85, Sum P(2) = 1.1e-85
Identities = 80/170 (47%), Positives = 116/170 (68%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + SLL +G VL+FSQ+R+ML++++ + ++ Y +L++DGTT + R +
Sbjct: 827 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPL 886
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
+ + E +FLLT++VGGLG+ LT A+RVI+ DP WNPSTD Q+ +RA+RIGQKK V
Sbjct: 887 ITRYNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQV 946
Query: 872 VVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
VYRL+T GT+EEKIY +QIFK L + +Q R+F DL EL +L
Sbjct: 947 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 996
Score = 46 (21.3 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 219 ADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
A E EES + + EE+ E G L +E R V ++ ++ ++D + S E
Sbjct: 368 ASEGEES--EYLPSEEEPQEAAGADLSEDERRRVLSHRKRQKKVTVQDIDDDFFPSSGEE 425
Query: 279 VEG 281
EG
Sbjct: 426 AEG 428
Score = 42 (19.8 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 5 DKKPVKVEAEVRTNDCSVLSRDHDHVESRSV-IDEEKPQKVKIEGRRRLCKVSSRDVDN 62
D +P + E + L + + E+ + E++ ++V + R+R KV+ +D+D+
Sbjct: 360 DMRP-EAEGASEGEESEYLPSEEEPQEAAGADLSEDERRRV-LSHRKRQKKVTVQDIDD 416
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 542 (195.9 bits), Expect = 3.5e-85, Sum P(3) = 3.5e-85
Identities = 146/438 (33%), Positives = 218/438 (49%)
Query: 289 HETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVS----GKLVVNRPD 344
HE + +KK EPK + ++ EE D + + G + R
Sbjct: 381 HEEYQLKPYKKKKEPKTRKPKKEDESDDYIPSSSEEEDSQKGGKVKKCKDDGDIECYRQR 440
Query: 345 RRDGKLNKSAHSGLVNVL-DDYSDDSVLE-DEGSITLSGPRSTYMLPGKIGNMLFPHQRE 402
R K + ++ SD+S E DEG + +PG + LF +Q+
Sbjct: 441 IRKWKRQRLREKEAKREAGEEESDESDAEFDEG----------FKIPGFLWKKLFKYQQT 490
Query: 403 GLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-----------LVVA 451
G+RW+W LHCQ GGILGD+MGLGKT+QI FLAGL +S+L R ++V
Sbjct: 491 GVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVC 550
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE--LQYVLQDKGVLLTTYDIVRNNSK 509
P T++ W+KE ++ T T + E + ++ G+L+T+Y +R
Sbjct: 551 PATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSYSYIR---- 606
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569
+ D D W Y+ILDEGH I+NP+ + + + HR I+SG+P+QNN
Sbjct: 607 ------IMQDYIQRYD--WHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNN 658
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
LKELW+LF+F P LG F E++ +PI G +A + + A LR+ I PY
Sbjct: 659 LKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPY 718
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRR+K DV ++ +L KNE +++ RLT QRQ+Y+ FL+S+ V +G
Sbjct: 719 LLRRMKA------DVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGDMQV 772
Query: 688 LAALTILKKICDHPLLLT 705
+ L L+KIC+HP L T
Sbjct: 773 FSGLIALRKICNHPDLFT 790
Score = 399 (145.5 bits), Expect = 3.5e-85, Sum P(3) = 3.5e-85
Identities = 81/182 (44%), Positives = 120/182 (65%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + SLL +GH VL+F+Q+R+ML +++ + G+ +L++DGTT + R +
Sbjct: 816 SGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPL 875
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
+ F + +F+LT++VGGLG+ LT A+RV++ DP WNPSTD Q+ +RA+RIGQK+ V
Sbjct: 876 IAQFNQNKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQV 935
Query: 872 VVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL--LSLP--KQGFD 927
VYRL+T GT+EEKIY +QIFK L + +Q R+F D+ EL LS P QG +
Sbjct: 936 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLSSPDGSQGTE 995
Query: 928 VS 929
S
Sbjct: 996 TS 997
Score = 50 (22.7 bits), Expect = 3.5e-85, Sum P(3) = 3.5e-85
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 23 LSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDD--EPNFSDITD 80
+SR + V+ + E++ +K++ + +R + D+ E +++D EP S +
Sbjct: 155 ISRKIESVKRQKENKEKQLKKIRAKQKRLQALLDGEDIQKLEAELLIEDDEEPGPSTLGS 214
Query: 81 FDSPLQ 86
P Q
Sbjct: 215 MLMPAQ 220
Score = 42 (19.8 bits), Expect = 2.4e-84, Sum P(3) = 2.4e-84
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 268 DGEEDG----GSL----SEVEGDEHLSRVHET---KKHHQRQKKNEPKRV 306
D EE G GS+ E E +E + H T + Q+Q+K EP++V
Sbjct: 203 DDEEPGPSTLGSMLMPAQESEWEELIRTGHMTPFGSRIPQKQEKKEPRKV 252
Score = 37 (18.1 bits), Expect = 2.1e-31, Sum P(3) = 2.1e-31
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 153 KRRVPKTVDPEDDF-SRLVKNGDTGQGSK 180
K R PK D DD+ + D+ +G K
Sbjct: 396 KTRKPKKEDESDDYIPSSSEEEDSQKGGK 424
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 536 (193.7 bits), Expect = 5.5e-85, Sum P(2) = 5.5e-85
Identities = 150/468 (32%), Positives = 229/468 (48%)
Query: 260 RESFESNLDGEEDG--GSLSEVEGDEHLSRVHETKKHH-----QRQKKNEPKRVHDGERF 312
R E N +GEE + E+E E + E K + +R K+ + V + E
Sbjct: 367 RLKVEGNSEGEESEYLPTEEELEEAEGVKLTGEDKDYELNPMLKRWKRQKKVMVQENE-- 424
Query: 313 NGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLE 372
F EE E C K+V R D + + L D LE
Sbjct: 425 --DDFSPSSGEEA--EAACGGRGRKVVRCRDDGDEDYYKQRLRKWNKLRLQDKEKCLKLE 480
Query: 373 DEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC 432
D+ + + +PG + LF +Q+ G+RWLW LHCQ GGILGD+MGLGKT+QI
Sbjct: 481 DDSEES-DAEFDDFKMPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQII 539
Query: 433 GFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VGLSAKIREYFGTC 479
FLAGL +S++ R ++V P T++ W+KE I G+
Sbjct: 540 AFLAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSY 599
Query: 480 VKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 539
+ ++ ++ + G+L+T+Y +R + D+ D W Y+ILDEGH I
Sbjct: 600 TQKKEKLIRDIAHCHGILITSYSYIR----------LMQDDISRHD--WHYVILDEGHKI 647
Query: 540 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI 599
+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG F E++ +PI
Sbjct: 648 RNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPI 707
Query: 600 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
G +A + + A LR+ I PY LRR+K+ DV S +L KNE +++
Sbjct: 708 TMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMSLSLPDKNEQVLF 761
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 762 CRLTEEQHKVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHPDLFS 809
Score = 406 (148.0 bits), Expect = 5.5e-85, Sum P(2) = 5.5e-85
Identities = 85/191 (44%), Positives = 124/191 (64%)
Query: 735 IADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY 794
I D E+D F + S K+ + SLL +G VL+FSQ+R+ML++++ + ++ Y
Sbjct: 818 IPDDDEEDQFG--YWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKY 875
Query: 795 KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
+L++DGTT + R ++ + E +FLLT++VGG+G+ LT A+RVI+ DP WNPST
Sbjct: 876 SYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPST 935
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQD 914
D Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F D
Sbjct: 936 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSND 995
Query: 915 LRELLSLPKQG 925
L EL +L G
Sbjct: 996 LYELFTLTSPG 1006
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 541 (195.5 bits), Expect = 1.0e-83, Sum P(3) = 1.0e-83
Identities = 157/472 (33%), Positives = 235/472 (49%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHD------GERFNG 314
E E D E +G +++ GD + K +RQKK + + D GE
Sbjct: 378 EEEEEEEDDEVEGAE-ADLSGDGTDYELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEAEA 436
Query: 315 QSFVSGG---RE--EYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDS 369
S GG R+ Y D+ D +L RR KL + + DD S++S
Sbjct: 437 ASVGEGGGGGRKVGRYRDDGDEDYYKQRL------RRWNKLRLQDKEKRLKLEDD-SEES 489
Query: 370 VLE-DEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKT 428
E DEG + +PG + LF +Q+ G+RWLW LHCQ GGILGD+MGLGKT
Sbjct: 490 DAEFDEG----------FKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKT 539
Query: 429 MQICGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VGLSAKIREY 475
+QI FLAGL +S++ R ++V P T++ W+KE I
Sbjct: 540 IQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHE 599
Query: 476 FGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDE 535
G+ ++ ++ V G+L+T+Y +R + D+ D W Y+ILDE
Sbjct: 600 TGSYTHKKEKLIRDVAHCHGILITSYSYIR----------LMQDDISRYD--WHYVILDE 647
Query: 536 GHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKY 595
GH I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG F E++
Sbjct: 648 GHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQF 707
Query: 596 ELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNE 655
+PI G +A + + A LR+ I PY LRR+K+ DV S +L KNE
Sbjct: 708 SVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMSLSLPDKNE 761
Query: 656 MIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
+++ RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 762 QVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFS 813
Score = 401 (146.2 bits), Expect = 1.0e-83, Sum P(3) = 1.0e-83
Identities = 83/185 (44%), Positives = 122/185 (65%)
Query: 737 DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
D E+D F + S K+ + SLL +G VL+FSQ+R+ML++++ + ++ Y +
Sbjct: 825 DELEEDQFG--YWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTY 882
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
L++DGTT + R ++ + E +FLLT++VGGLG+ LT A+RV++ DP WNPSTD
Sbjct: 883 LKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDT 942
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 916
Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F DL
Sbjct: 943 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLY 1002
Query: 917 ELLSL 921
EL +L
Sbjct: 1003 ELFTL 1007
Score = 37 (18.1 bits), Expect = 1.0e-83, Sum P(3) = 1.0e-83
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 223 EESKGDDVADEEQETENVGIGL 244
+ES GD +E +VG GL
Sbjct: 33 QESGGDGEVEEYLSFRSVGDGL 54
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 398 (145.2 bits), Expect = 6.2e-82, Sum P(4) = 6.2e-82
Identities = 85/198 (42%), Positives = 127/198 (64%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS-KGYKFLRIDGTTKASDRVK 810
S K+ + SLL+ GH L+F+Q R ML+++++ + S G+ + R+DGTT R
Sbjct: 735 SGKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQT 794
Query: 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
+V++F + +FLLT++VGGLG+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQK+D
Sbjct: 795 MVDEFNKDPDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRD 854
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSL 930
V +YRLMT GT+EEKIY +QIFK L + +Q + F DL +L +L ++G +
Sbjct: 855 VTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRQTFQLSDLYDLFALGEEGQGPTE 914
Query: 931 TQQQLHE-EHGDQHNMDE 947
T + E E + N D+
Sbjct: 915 TSKLFKEAEVTYEENRDK 932
Score = 340 (124.7 bits), Expect = 6.2e-82, Sum P(4) = 6.2e-82
Identities = 76/176 (43%), Positives = 107/176 (60%)
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
W ILDEGH I+NP+T E+ + HRII+SGTP+QNNL ELW+LF+F P LG
Sbjct: 548 WGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGT 607
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
F+ ++E PI +G +A + + + + A+ L++ I PY L+R K +V +
Sbjct: 608 LVNFRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDAISPYLLQRFKIDV--------A 659
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHP 701
A L KK+E +++ RLT QRQ YEAFL SE + S G L + IL+KIC+HP
Sbjct: 660 ADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQSILRGRRQVLYGVDILRKICNHP 715
Score = 221 (82.9 bits), Expect = 6.2e-82, Sum P(4) = 6.2e-82
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
Y +PG I +LF +Q+ G++W+W LH Q GGI+GD+MGLGKT+Q FLAGL +S RL
Sbjct: 388 YRIPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDEMGLGKTIQAIAFLAGLHYSKRLT 447
Query: 445 KRALVVAPKTLLSHWIKE 462
K +VV P T++ W+ E
Sbjct: 448 KPIIVVCPATVMKQWVNE 465
Score = 54 (24.1 bits), Expect = 6.2e-82, Sum P(4) = 6.2e-82
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 56 SSRDVDNTENRAVVDDEPNFS-DITDF---DSPLQSKTVSAMVNIESRAVIDDG 105
+S D D++ + + D E FS D DF + P+++K + +E + +DDG
Sbjct: 270 ASEDQDDSASY-IEDPEQEFSEDDEDFVTEEKPVRAKKAKSSDEVEDFSGLDDG 322
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 415 (151.1 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 99/233 (42%), Positives = 141/233 (60%)
Query: 704 LTKRAAEDVLDGMD--SMLNPEDAAL-----AEKLAMHIADVAE-----KDDFQEQHDNI 751
L ++A +D L G D +LN + L K+ H V K+D+
Sbjct: 564 LQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGDPEK 623
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK---FLRIDGTTKASDR 808
S K+ I +LL +GH L+FSQTR+ML++++ IG K + R+DG+T + R
Sbjct: 624 SGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILE--IGLKDLPDVHYCRMDGSTSIALR 681
Query: 809 VKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 868
+V++F + + +FLLT++VGGLG+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQK
Sbjct: 682 QDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQK 741
Query: 869 KDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
KDVVVYRLMT GT+EEKIY +QIFK L + +Q R+F DL +L +L
Sbjct: 742 KDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTL 794
Score = 324 (119.1 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 87/249 (34%), Positives = 136/249 (54%)
Query: 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL--RGSSFISDEAG---D 523
S + R+Y ++ E + ++ +G + + +N +S+ RG I+ AG
Sbjct: 367 SREKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIY 426
Query: 524 DDAI----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNF 579
D I W Y +LDEGH I+NP ++ + S +I + +RII+SGTPIQNNL ELW LF+F
Sbjct: 427 GDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDF 486
Query: 580 CCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVF 639
P LG F+ ++ LPI G +A + + + A LR+ I PY LRR+K +V
Sbjct: 487 VFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDV- 545
Query: 640 HEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKI 697
+A L KK+E +++ +LT QR+ Y+ FL + +G L + IL+KI
Sbjct: 546 -------AADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKI 598
Query: 698 CDHPLLLTK 706
C+HP L+T+
Sbjct: 599 CNHPDLVTR 607
Score = 209 (78.6 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
+ +PG I LF +Q ++WLW L+CQ GGI+GD+MGLGKT+QI FL+ L HS +
Sbjct: 267 FTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQ 326
Query: 445 KRALVVAPKTLLSHWIKE 462
K AL+V P TL+ W+ E
Sbjct: 327 KPALIVCPATLMKQWVNE 344
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 377 (137.8 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 88/249 (35%), Positives = 148/249 (59%)
Query: 727 LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI----PEGHNVLIFSQTRKML 782
+ K+ H D+ ++D + D K S + ++ +L+ +G+ L+F+Q+R+ML
Sbjct: 622 ILRKICNH-PDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQML 680
Query: 783 NLIQESIGSKG-----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTL 837
++++E I +K +LR+DGTT R +V+ F + +FLLT++VGGLG+ L
Sbjct: 681 DILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNN-ESFDVFLLTTRVGGLGVNL 739
Query: 838 TKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLF 897
T A+R+I+ DP WNPSTD Q+ +RA+RIGQK++V +YRLM G++EEKIY +QIFK L
Sbjct: 740 TGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLT 799
Query: 898 KTATEHKEQIRYFSQQDLRELLSLP-KQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFL 956
+Q R+F +L +L SL + G+ +++ ++H + +S E+ F
Sbjct: 800 NRILTDPKQKRFFKIHELHDLFSLGGENGYSTEELNEEV-QKHTENLKNSKSEESD-DFE 857
Query: 957 DTLGIAGVS 965
+ ++GVS
Sbjct: 858 QLVNLSGVS 866
Score = 317 (116.6 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 76/192 (39%), Positives = 114/192 (59%)
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
W Y +LDEGH I+NP ++ + + ++ + +RII+SGTPIQNNL ELW+LF+F P LG
Sbjct: 463 WQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGT 522
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
F++++ +PI G +A + + + G A LR+ I PY LRR+K +V +
Sbjct: 523 LPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKD------ 576
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLL- 704
L +K EM+++ +LT QR Y FL+S + +G + L + IL+KIC+HP LL
Sbjct: 577 --LPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLD 634
Query: 705 --TKRAAEDVLD 714
TKR D D
Sbjct: 635 RDTKRHNPDYGD 646
Score = 192 (72.6 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL 443
S + +PG+I ++LF +Q+ ++WL+ L+ Q GGI+GD+MGLGKT+Q+ F+A L HS L
Sbjct: 285 SQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGL 344
Query: 444 IKR-ALVVAPKTLLSHWIKE 462
+ L+V P T++ W E
Sbjct: 345 LTGPVLIVCPATVMKQWCNE 364
Score = 52 (23.4 bits), Expect = 3.1e-74, Sum P(4) = 3.1e-74
Identities = 36/150 (24%), Positives = 58/150 (38%)
Query: 135 IRDILNDLSARLEILSIDKRRVPKTVDP-EDDFSRLVKNGDTGQGSKGNLPEYXXXXXXX 193
++ L D L+ S D RV K +D + L + D G +KG+ E
Sbjct: 84 VKQNLRDQIKNLQ--SDDIERVLKDIDDIQSRIKELKEQVDQGAENKGS-KEGLQRPGET 140
Query: 194 XXXXXXXXXXXGVTKDNVGGVVESVADEYEESKGDDVADEEQE--TENVGIGLKRNEPRW 251
G +++ EY +K D+ DE+ E TE + L +
Sbjct: 141 EKEFLIRTGKITAFGHKAGFSLDTANREY--AKNDEQKDEDFEMATEQMVENLTDEDDNL 198
Query: 252 VDNNL-VSARESFESNLDGEEDGGSLSEVE 280
D + +S +ES E + + E D L E+E
Sbjct: 199 SDQDYQMSGKES-EDDEEEENDDKILKELE 227
Score = 38 (18.4 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 761 LLDKLIPEGHNVLI 774
L+DK++ +GH +LI
Sbjct: 433 LIDKVVTDGH-ILI 445
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 400 (145.9 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 80/170 (47%), Positives = 116/170 (68%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + SLL +G VL+FSQ+R+ML++++ + ++ Y +L++DGTT + R +
Sbjct: 829 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPL 888
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
+ + E +FLLT++VGGLG+ LT A+RVI+ DP WNPSTD Q+ +RA+RIGQKK V
Sbjct: 889 ITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQV 948
Query: 872 VVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
VYRL+T GT+EEKIY +QIFK L + +Q R+F DL EL +L
Sbjct: 949 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 998
Score = 371 (135.7 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 134/486 (27%), Positives = 218/486 (44%)
Query: 242 IGLKRNEPRW---VDNNLVSARESFESN-LDGEEDGGSLSEVEGDEHLSRVHETKKHHQR 297
+GL + + W V N E ES L EE+ L E G + + ++
Sbjct: 348 VGLLKGKKPWDCDVRPNAQGDSEDEESEYLPTEEE---LEETVGADLPGEGSDWEQRLVL 404
Query: 298 QKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHS- 356
++ K+V E + F S G EE + G+ VV D D K S
Sbjct: 405 NRRKRQKKVTVQE-IDDDFFPSSG-EEAEATG-----GGRKVVRCRDDGDEDYYKQRLSR 457
Query: 357 -GLVNVLDDYSDDSVLED-EGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQG 414
+ + D + L+D S+ ++ M P + L+ ++ + + + C
Sbjct: 458 WSITRLKQDKASLPWLDDITNSMDMNLSHGVRM-PKIMRKSLYKYREKDNVFPGDIRCAQ 516
Query: 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKEL 463
LGD G +I FL RL R ++V P T++ W+KE
Sbjct: 517 GAWELGDSTGHADAQRILAFLMKTSFKRLRVRGVYALFEGLGPTIIVCPTTVMHQWVKEF 576
Query: 464 TAVGLSAKIREYFGTCVKTRQYE--LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEA 521
+ ++ T T + E ++ + + G+L+T+Y +R + D+
Sbjct: 577 HTWWPAFRVAVLHETGSFTHKKEKLVRDIARCHGILITSYSYIR----------LMQDDI 626
Query: 522 GDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCC 581
D W Y+ILDEGH I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F
Sbjct: 627 SRHD--WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIF 684
Query: 582 PELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHE 641
P LG F E++ +PI G +A + + A LR+ I PY LRR+K+
Sbjct: 685 PGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS----- 739
Query: 642 DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICD 699
DV S +L KNE +++ RLT Q ++Y+ F++S+ V +G + L L+KIC+
Sbjct: 740 -DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICN 798
Query: 700 HPLLLT 705
HP L +
Sbjct: 799 HPDLFS 804
Score = 47 (21.6 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 271 EDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYD 326
E +L+E + DE V +T K ++Q K KR + GQ + G++ +D
Sbjct: 306 EPSSALNENKPDERGKAVSKTDKRLKKQIKKLQKRAL---QLQGQVGLLKGKKPWD 358
Score = 42 (19.8 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGD 282
E+ + + + EE+ E VG L W + LV R + + +E G+
Sbjct: 370 EDEESEYLPTEEELEETVGADLPGEGSDW-EQRLVLNRRKRQKKVTVQEIDDDFFPSSGE 428
Query: 283 E 283
E
Sbjct: 429 E 429
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 689 (247.6 bits), Expect = 2.2e-64, Sum P(2) = 2.2e-64
Identities = 198/583 (33%), Positives = 297/583 (50%)
Query: 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL- 443
++ LP I L +Q+EG+ WL L+ GIL DDMGLGKT+Q ++ H R
Sbjct: 1291 SFDLPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREE 1350
Query: 444 -IKR----------ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492
K +LV+ P +L+ HW +E+ K+ Y G+ + + L+ +
Sbjct: 1351 NFKETGSAEYRKLPSLVICPPSLIGHWEQEINQYAPFMKVLVYAGS--PSIRIPLRGQIP 1408
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
D V++T+YD+ RN+ +SL + +Y +LDEGH+IKN S++ +KS+
Sbjct: 1409 DADVVVTSYDVCRNDVESLTKHDY------------NYCVLDEGHIIKNASSKLSKSVKR 1456
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ + HR+I+SGTPIQNN+ ELW+LF+F P LG K F EK+ PI + +E+
Sbjct: 1457 VKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQ 1516
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
G+ + L +++ P+ LRRLK +DV S L K + L+ Q++LY+
Sbjct: 1517 EAGALAMESLHKQVLPFMLRRLK------EDVLSD--LPPKIIQDYYCELSDLQKKLYKD 1568
Query: 673 FLNS--EIVLSAFDGSP-------LAALTILKKICDHPLLLTK----RAAED---VLDGM 716
F + E + + GS AL ++K+C+HP L+ + AE ++
Sbjct: 1569 FAKTQKETIKTDVQGSEKEGKTHVFQALQYMRKLCNHPALVMSEQHPKYAEINQFLISRN 1628
Query: 717 DSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-EG----HN 771
+ N E A L + + E ++N+S K S +LI +G H
Sbjct: 1629 TDLRNIEHAPKLLSLKNLLLECGIGSQDSEYNNNVSKKKSLQQQQQQQLISADGVISEHR 1688
Query: 772 VLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828
LIF Q + ML++++ + K F+R+DG+T DR IV F E + LLT+
Sbjct: 1689 ALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTT 1748
Query: 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+VGGLGL LT AD VI V+ WNP D Q++DRA+R+GQKK V VYRL+T T+EEKI
Sbjct: 1749 KVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMG 1808
Query: 889 KQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLT 931
Q FK + T +Q D +LL L FDV T
Sbjct: 1809 LQKFKMNIASTIVN--QQNAGLQSMDTNQLLDL----FDVDDT 1845
Score = 50 (22.7 bits), Expect = 2.2e-64, Sum P(2) = 2.2e-64
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 11 VEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVD 70
++ E TND ++L R H S+I +E E + L K SS D +T+ +V
Sbjct: 158 IDPEDYTNDVTLLGRIKRH--RSSIIPKE-------ETKSDLSKESSPDA-HTKEEPIVK 207
Query: 71 DEP 73
EP
Sbjct: 208 QEP 210
Score = 49 (22.3 bits), Expect = 2.8e-64, Sum P(2) = 2.8e-64
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDE-EKPQKVKIEGRRRLCKVSSRDVDNTENRAVVD 70
EA+++ N + H+ + D+ K +++ IE R L K D + ++V+D
Sbjct: 1061 EAKIKRNGALMTLDQLVHIYGPKLFDQVTKLKEMMIEPLRYLSKTEEVSQDELKGQSVID 1120
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 661 (237.7 bits), Expect = 2.6e-64, P = 2.6e-64
Identities = 203/596 (34%), Positives = 294/596 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 76 LDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 134
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFG----TCV 480
G S+L + +LVV P TL HW+ E VG REY T
Sbjct: 135 GDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE---VGKFCS-REYLNPLHYTGP 190
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
T + LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IK
Sbjct: 191 PTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIK 238
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N T+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL
Sbjct: 239 NGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPIL 298
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
D + RE+ G L ++ P+ LRR+K +V + L K +
Sbjct: 299 ASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYC 350
Query: 661 RLTSCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP 701
L+ Q QLYE F S E V SA G AL L+K+C+HP
Sbjct: 351 TLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHP 410
Query: 702 -LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH---IADVAEKDDFQEQHDNI-SCKI- 755
L+LT + +PE AEKLA+ + D+ + C +
Sbjct: 411 ALVLTPQ-------------HPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG 457
Query: 756 --SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVK 810
S S + ++ + H +LIF Q + ML++++ + +LR+DG+ R
Sbjct: 458 NGSTSESGTESVVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHS 516
Query: 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
IV+ F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+
Sbjct: 517 IVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 576
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
V VYRL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 577 VNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 632
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 676 (243.0 bits), Expect = 7.6e-64, Sum P(2) = 7.6e-64
Identities = 200/621 (32%), Positives = 313/621 (50%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLF----- 439
+ LP I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC + +
Sbjct: 1262 FKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKED 1321
Query: 440 --HSRLIK-RAL---VVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 493
+R ++ RAL ++ P +L HW E K+ Y G T + L+ L D
Sbjct: 1322 YEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGG--PTVRLTLRPQLSD 1379
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
+++T+YD+ RN+ L + + +Y +LDEGH+IKN ++ AK++ EI
Sbjct: 1380 ADIIVTSYDVARNDLAVLNKTEY------------NYCVLDEGHIIKNSQSKLAKAVKEI 1427
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ HR+I++GTPIQNN+ ELW+LF+F P LG K F+E++ PI + +E+
Sbjct: 1428 TANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQE 1487
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
G + L +++ P+ LRRLK +DV S L K + L Q+QLY F
Sbjct: 1488 AGVLALEALHKQVLPFMLRRLK------EDVLSD--LPPKIIQDYYCELGDLQKQLYMDF 1539
Query: 674 LNSE--IVLSAFDGSPLA--------ALTILKKICDHPLLLTK------RAAEDVLD--G 715
+ +V + S +A AL ++K+C+HP L+ +D L G
Sbjct: 1540 TKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTG 1599
Query: 716 MD--SMLN-PEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNV 772
+D ++N P+ +AL + + + E+D ++ + + I ++S H
Sbjct: 1600 LDLHDIINAPKLSAL--RTLLFECGIGEEDIDKKASQDQNFPIQNVISQ--------HRA 1649
Query: 773 LIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 829
LIF Q + ML++++ + K ++R+DG+ DR K+V F E LLT++
Sbjct: 1650 LIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTK 1709
Query: 830 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
VGGLGL LT AD VI V+ WNP D Q++DRA+RIGQKK V VYR++T GT+EEKI
Sbjct: 1710 VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGL 1769
Query: 890 QIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDV-SLTQQQLHEEHGDQHNMDES 948
Q FK + T +Q + D +LL L FD ++T Q E++ +
Sbjct: 1770 QKFKMNIASTVVN--QQNSGLASMDTHQLLDL----FDPDNVTSQDNEEKNNGDSQAAKG 1823
Query: 949 LEAHIQFLDTLGIAGVSHHSL 969
+E + G+ G + +L
Sbjct: 1824 ME---DIANETGLTGKAKEAL 1841
Score = 59 (25.8 bits), Expect = 7.6e-64, Sum P(2) = 7.6e-64
Identities = 43/177 (24%), Positives = 72/177 (40%)
Query: 3 LDDKKPVKVEAEVRTNDCSVLSRDHDHVESRS--VIDEE-KPQKVKIEGRRRLCKVSSRD 59
L+ + +K+E + N ++L DH H+ S S ++E K KV + V +
Sbjct: 102 LEHEMKIKLEEATQNNQLNLLQEDH-HLSSLSDWKLNEILKSGKVLLASSMNDYNVLGKA 160
Query: 60 VDNTENRAVVDD---EPNFSDITD------FDSPLQSKTVSAMVNIESRAVIDDGPKFS- 109
DN +A DD E + + +D ++ +S + AM + + + PK
Sbjct: 161 DDNIRKQAKTDDIKQETSMLNASDKANENKSNANKKSARMLAMARRKKKMSAKNTPKHPV 220
Query: 110 DITVFDSPPKAKTVSEN-DNYKGGNEIRDILNDLSARLEILS-IDKRR--VPKTVDP 162
DIT S K +N N N L+ +LEI D+ + + TV P
Sbjct: 221 DITE-SSVSKTLLNGKNMTNSAASLATSPTSNQLNPKLEITEQADESKLMIESTVRP 276
Score = 50 (22.7 bits), Expect = 4.6e-62, Sum P(3) = 4.6e-62
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 233 EEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETK 292
+ E++ VG G P +DN V + L+ L+ ++ D HLS + + K
Sbjct: 79 DPNESDLVG-GTNEGSP--LDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWK 135
Score = 42 (19.8 bits), Expect = 4.7e-62, Sum P(2) = 4.7e-62
Identities = 37/154 (24%), Positives = 65/154 (42%)
Query: 3 LDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
L++ K V V ++ N C L D V SV E K +K+ L K S
Sbjct: 967 LENNK-VNVSGKIVKNLCGFLCVDTSEVPDFSVNAEYK-EKILT-----LIKES------ 1013
Query: 63 TENRAVVDDEPNFSDITDFDSPLQSK----TVSAMVNIESRAVIDDGPKFSDITVFDS-- 116
N D+ N + +++ ++ L+ K T+ + + +++ P+ I +FDS
Sbjct: 1014 --NSIAAQDDINLAKMSE-EAQLKRKGGLITLKILFEVLGPSILQKLPQLRSI-LFDSLS 1069
Query: 117 PPKAKTVSENDNYKGGNEIRDILNDLSARLEILS 150
+ + S+ DN +G +I D L A +S
Sbjct: 1070 DHENEEASKVDNEQG-QKIVDSFGVLRALFPFMS 1102
Score = 37 (18.1 bits), Expect = 4.6e-62, Sum P(3) = 4.6e-62
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 347 DGKLNKSAHSGLVNVLDDYSDDSVL 371
D KLN+ SG V + +D +VL
Sbjct: 133 DWKLNEILKSGKVLLASSMNDYNVL 157
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 438 (159.2 bits), Expect = 7.1e-63, Sum P(2) = 7.1e-63
Identities = 137/533 (25%), Positives = 249/533 (46%)
Query: 216 ESVADEYEESKGDDVA---DEEQETENV-GIGLKRNEPRWVDNNLVSARESFESNLDGEE 271
E + D ++ K ++++ +EE E N ++ N+ N+ + ++ ++ D
Sbjct: 133 EQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDNNNNHNDDSN 192
Query: 272 DGGSLSEVEGDEHLSRVHETKKHHQ-RQKKNEPKRVHDGERFN---GQSFVSGGREEYDD 327
+ S D+ + ++ H+ NE H+ + N ++ S + Y
Sbjct: 193 NHNDDSNNHNDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQ 252
Query: 328 ED-DCVIVSGKLVVNRPDRRDGKLN---KSAHSGLVNVLDDYSDDSVLEDEGSITLSGPR 383
E + ++ K + + K+N KS+ G + + D +L+D
Sbjct: 253 EKLEQLLAQTKRYTEKLAGQRLKMNAQMKSSKKGRCLLTEKEEDFMLLKDANE---EDEA 309
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSR 442
P I + P+Q EGL WL+ L+ GIL D+MGLGKT+Q L L F+
Sbjct: 310 IILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKN 369
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
+ K+++++ P++ L +W +E+ K +Y+G + ++ + D VLLTTY+
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYE 429
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
IV I D++ D W ++++DE H IKN + + S+ + S +R++I+
Sbjct: 430 IV------------IKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLIT 477
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+ NNLKELW+L NF P++ +++ F + + + ND K+ S + +L
Sbjct: 478 GTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDN------KQ--SEIITQL 529
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VLS 681
++P+ LRRLK EV +L K E+ +++ ++ Q++LY L+ I VL+
Sbjct: 530 HTILKPFMLRRLKVEV--------EQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLN 581
Query: 682 AFDGSPLAALTIL---KKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
A GS L IL +K C+HP L ++G + +L +KL
Sbjct: 582 AMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKL 634
Score = 298 (110.0 bits), Expect = 7.1e-63, Sum P(2) = 7.1e-63
Identities = 77/188 (40%), Positives = 111/188 (59%)
Query: 711 DVLDGMDSMLNPEDAALAE--KLAMH--IADVAEKDDFQEQHDNISCKISFILSLLDKLI 766
DVL+ M N L + K H + D E+ + E + I + S +SLLDKL+
Sbjct: 578 DVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI--ETSGKMSLLDKLL 635
Query: 767 P----EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP 822
P E VL+FSQ ++L++I + K Y +LRIDG+T +R +N F E +
Sbjct: 636 PRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKY 695
Query: 823 -IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 881
IFLL+++ GG+G+ LT AD VI+ D +NP D Q++DRA+RIGQKK V+VYR +T +
Sbjct: 696 FIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNS 755
Query: 882 VEEKIYRK 889
VEEKI +
Sbjct: 756 VEEKIVER 763
Score = 48 (22.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 24/123 (19%), Positives = 54/123 (43%)
Query: 252 VDNNLVSAR--ESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG 309
++ N+++ + S E D D + D H+S + K + ++N ++++D
Sbjct: 80 MNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEENS-EQMNDN 138
Query: 310 ---ERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYS 366
+ N S+ + +E+ ++ D + +N D+ G N S + N +++
Sbjct: 139 MKKRKLNEISYDNNEEDEFRNKKD-----DSMEMN--DKEKGSTNMSTINDNNN---NHN 188
Query: 367 DDS 369
DDS
Sbjct: 189 DDS 191
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 438 (159.2 bits), Expect = 7.1e-63, Sum P(2) = 7.1e-63
Identities = 137/533 (25%), Positives = 249/533 (46%)
Query: 216 ESVADEYEESKGDDVA---DEEQETENV-GIGLKRNEPRWVDNNLVSARESFESNLDGEE 271
E + D ++ K ++++ +EE E N ++ N+ N+ + ++ ++ D
Sbjct: 133 EQMNDNMKKRKLNEISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDNNNNHNDDSN 192
Query: 272 DGGSLSEVEGDEHLSRVHETKKHHQ-RQKKNEPKRVHDGERFN---GQSFVSGGREEYDD 327
+ S D+ + ++ H+ NE H+ + N ++ S + Y
Sbjct: 193 NHNDDSNNHNDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQ 252
Query: 328 ED-DCVIVSGKLVVNRPDRRDGKLN---KSAHSGLVNVLDDYSDDSVLEDEGSITLSGPR 383
E + ++ K + + K+N KS+ G + + D +L+D
Sbjct: 253 EKLEQLLAQTKRYTEKLAGQRLKMNAQMKSSKKGRCLLTEKEEDFMLLKDANE---EDEA 309
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSR 442
P I + P+Q EGL WL+ L+ GIL D+MGLGKT+Q L L F+
Sbjct: 310 IILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKN 369
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
+ K+++++ P++ L +W +E+ K +Y+G + ++ + D VLLTTY+
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYE 429
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
IV I D++ D W ++++DE H IKN + + S+ + S +R++I+
Sbjct: 430 IV------------IKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLIT 477
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+ NNLKELW+L NF P++ +++ F + + + ND K+ S + +L
Sbjct: 478 GTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDN------KQ--SEIITQL 529
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VLS 681
++P+ LRRLK EV +L K E+ +++ ++ Q++LY L+ I VL+
Sbjct: 530 HTILKPFMLRRLKVEV--------EQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLN 581
Query: 682 AFDGSPLAALTIL---KKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
A GS L IL +K C+HP L ++G + +L +KL
Sbjct: 582 AMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKL 634
Score = 298 (110.0 bits), Expect = 7.1e-63, Sum P(2) = 7.1e-63
Identities = 77/188 (40%), Positives = 111/188 (59%)
Query: 711 DVLDGMDSMLNPEDAALAE--KLAMH--IADVAEKDDFQEQHDNISCKISFILSLLDKLI 766
DVL+ M N L + K H + D E+ + E + I + S +SLLDKL+
Sbjct: 578 DVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLI--ETSGKMSLLDKLL 635
Query: 767 P----EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP 822
P E VL+FSQ ++L++I + K Y +LRIDG+T +R +N F E +
Sbjct: 636 PRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKY 695
Query: 823 -IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 881
IFLL+++ GG+G+ LT AD VI+ D +NP D Q++DRA+RIGQKK V+VYR +T +
Sbjct: 696 FIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNS 755
Query: 882 VEEKIYRK 889
VEEKI +
Sbjct: 756 VEEKIVER 763
Score = 48 (22.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 24/123 (19%), Positives = 54/123 (43%)
Query: 252 VDNNLVSAR--ESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG 309
++ N+++ + S E D D + D H+S + K + ++N ++++D
Sbjct: 80 MNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEENS-EQMNDN 138
Query: 310 ---ERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYS 366
+ N S+ + +E+ ++ D + +N D+ G N S + N +++
Sbjct: 139 MKKRKLNEISYDNNEEDEFRNKKD-----DSMEMN--DKEKGSTNMSTINDNNN---NHN 188
Query: 367 DDS 369
DDS
Sbjct: 189 DDS 191
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 401 (146.2 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 83/185 (44%), Positives = 122/185 (65%)
Query: 737 DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
D E+D F + S K+ + SLL +G VL+FSQ+R+ML++++ + ++ Y +
Sbjct: 195 DELEEDQFG--YWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTY 252
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
L++DGTT + R ++ + E +FLLT++VGGLG+ LT A+RV++ DP WNPSTD
Sbjct: 253 LKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDT 312
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 916
Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F DL
Sbjct: 313 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLY 372
Query: 917 ELLSL 921
EL +L
Sbjct: 373 ELFTL 377
Score = 326 (119.8 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 71/180 (39%), Positives = 107/180 (59%)
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
W Y+ILDEGH I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG
Sbjct: 10 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGT 69
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
F E++ +PI G +A + + A LR+ I PY LRR+K+ DV S
Sbjct: 70 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMS 123
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
+L KNE +++ RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 124 LSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFS 183
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 664 (238.8 bits), Expect = 4.2e-62, Sum P(2) = 4.2e-62
Identities = 202/610 (33%), Positives = 301/610 (49%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-- 443
+ LP I L P+Q+EG+ WL L+ GIL DDMGLGKT+Q +A H R
Sbjct: 1308 FKLPVAIKAELRPYQQEGVNWLAFLNRYNLHGILCDDMGLGKTLQTICIVASDHHMRAED 1367
Query: 444 ---IKR-------ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 493
+R +L++ P +L HW +E+ Y G + +LQ L D
Sbjct: 1368 FAKTQRPESRKVPSLIICPPSLSGHWQQEVKQYAPFLNCVAYVGP--PAERSKLQGSLAD 1425
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
+++T+YDI RN++ LR S W+Y +LDEGHLIKNP + ++ I
Sbjct: 1426 ADIVVTSYDICRNDNDVLRPIS------------WNYCVLDEGHLIKNPKAKVTMAVKRI 1473
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
S HR+I+SGTPIQNN+ ELW+LF+F P LG K F +++ PI + +E+
Sbjct: 1474 NSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKS-SKEQE 1532
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
G+ + L +++ P+ LRRLK EV ++ L K + + Q++L+E F
Sbjct: 1533 AGALAIEALHKQVLPFLLRRLKEEVLND--------LPPKIIQNYYCDPSELQKKLFEDF 1584
Query: 674 LNSEI-VLSAFDGSP--------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPED 724
E L GS AL ++++C+ P L+ K +G N
Sbjct: 1585 TKKEQKALQEKMGSSEKADKEHIFQALQYMRRLCNSPALVVK-------EG-HKQYNEVQ 1636
Query: 725 AALAEKLAMHIADVAEKDDFQEQHDNI-SCKISFILSLLDKLIPEG------HNVLIFSQ 777
L EK + ++ DV+ D + C I + + + G H L+F Q
Sbjct: 1637 QYLQEKKS-YLRDVSHAPKLSALKDLLLDCGIG--VEPTEGNLGAGASYVSPHRALVFCQ 1693
Query: 778 TRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLG 834
++ML+++Q + K +FLR+DG +A+ R IVN F + LLT+ VGGLG
Sbjct: 1694 MKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTSVGGLG 1753
Query: 835 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 894
L LT AD VI V+ WNP D Q++DRA+RIGQKK V VYRL+T GT+EEKI Q FK
Sbjct: 1754 LNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKI 1813
Query: 895 GLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQ--QLHEEHGDQHNMDESLEAH 952
+ T +Q + D +LL L G ++ ++ + D ++D L+
Sbjct: 1814 DVASTVVN--QQNAGLNTMDTDQLLDLFNLGETAENAEKPTEIGGKEVDMVDIDGELKEK 1871
Query: 953 IQ--FLDTLG 960
+ +LD LG
Sbjct: 1872 GKKGWLDDLG 1881
Score = 56 (24.8 bits), Expect = 4.2e-62, Sum P(2) = 4.2e-62
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 213 GVVESVADEYEESK--GDDVADEEQETENVGIGLKRNEPRWVDNNLVSARE-SFESNLD- 268
G++ + AD ++ ++ G+DV +E++ ++V + L+ EP V + L+ S L
Sbjct: 66 GLIVANADTFDPNQDDGEDVKKDEEDVDDVNVKLEE-EPISVADELLRLETLDLVSILKR 124
Query: 269 GEEDGGSLSEVEGDEHLS-RVHETKKHHQRQKKNEPKRV 306
G + GS S+ D+ LS ++ Q QKK +R+
Sbjct: 125 GRKLLGSGSK---DQELSLAAMDSAARLQHQKKLLTRRL 160
Score = 53 (23.7 bits), Expect = 8.7e-62, Sum P(2) = 8.7e-62
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 73 PNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDIT--VFDSPPKAKTVSENDNY- 129
P+F + SP Q T S ++N E+R ++ F+ D KA N+
Sbjct: 911 PDFEKLKRLLSPAQRITASKVLN-ETRVTAENAINFAKEARDTRDMRIKAAAAGALINFG 969
Query: 130 ----KGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPE 185
K GN I+ ++ + E + +R + ++ K G + GNL +
Sbjct: 970 AIPKKPGNLIKGVMESIKTE-ESAELQQRSATAVAVLVEHYTSAAKRGPVDKVI-GNLVK 1027
Query: 186 Y 186
Y
Sbjct: 1028 Y 1028
Score = 38 (18.4 bits), Expect = 3.3e-60, Sum P(2) = 3.3e-60
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 60 VDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVID----DGPKFSDITVFD 115
+D + A D E +F+++ P T++++ + RA+ +G +D D
Sbjct: 565 LDAMKENAAADSESSFANLVPRLYPFLRHTITSVRSAVLRALTTFLRLEGEGTNDWV--D 622
Query: 116 SPPKAKTVSENDNYKGGNEIRDILN-DLSARLEIL-SIDKRRVPKTVDPE 163
+ V +N + NE D+L L E+L S+D R V K+ DPE
Sbjct: 623 GKGM-RLVFQNLLVER-NE--DVLKLSLQVWSELLKSLDSRGVIKS-DPE 667
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 636 (228.9 bits), Expect = 1.5e-61, P = 1.5e-61
Identities = 181/565 (32%), Positives = 292/565 (51%)
Query: 382 PRSTYMLPGKIGNMLFPHQREGLRWLWS-----LHCQGKGGILGDDMGLGKTMQICGFLA 436
P ++ K+ +L PHQ G+++L+ + + KG I+ D+MGLGKT+Q +
Sbjct: 242 PDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMW 301
Query: 437 GLFHS-----RLIKRALVVAPKTLLSHWIKELTA-VGLSAKIREYFGTCVKTRQYELQYV 490
L R I++ ++V P +L+ +W E+ +G A + T+ EL
Sbjct: 302 TLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGA-LTPLAVDGKSTKNSELGTA 360
Query: 491 LQD----KG------VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
LQ +G VL+ +Y+ +R N L G+ E G M+ DEGH +K
Sbjct: 361 LQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGT-----EVG-------LMLADEGHRLK 408
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N + +L + R+I+SGTPIQN+L E ++L NF P LG FK+ YE IL
Sbjct: 409 NGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAIL 468
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
+G D A D E+ G EL + + + +RR N++ S L K E +++
Sbjct: 469 KGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT-NDIL-------SKYLPIKYEYVLFT 520
Query: 661 RLTSCQRQLYEAFLNSEIVLSAFDGS---PLAALTILKKICDHPLLLTKRAAEDVLDGMD 717
L+ Q+ +Y F+ S + G+ PL A+ +LKK+C+HP LL EDV +G +
Sbjct: 521 GLSPMQKDIYNHFITSPEIKKLMKGTGSQPLKAIGMLKKLCNHPDLLD--LPEDV-EGSE 577
Query: 718 SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFS 776
+ P+D +A A ++ +E S K + L K+ E + +++ S
Sbjct: 578 EFI-PDD--YQSSIA---GGSASRN--REIQTWFSGKFLILERFLQKINKETDDKIVLIS 629
Query: 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLG 834
+ L+LI++ K Y LR+DGT + R K+V+ F + + P IFLL+S+ GG G
Sbjct: 630 NYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPN-GPEFIFLLSSKAGGCG 688
Query: 835 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 894
+ L A+R++++DP WNP++D Q++ R +R GQKKD +YR ++ GT+EEKI+++Q K
Sbjct: 689 INLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKM 748
Query: 895 GLFKTATEHKEQI-RYFSQQDLREL 918
L + KE + R FS +LR+L
Sbjct: 749 SLSSCVVDEKEDVERLFSVANLRQL 773
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 636 (228.9 bits), Expect = 1.5e-61, P = 1.5e-61
Identities = 181/565 (32%), Positives = 292/565 (51%)
Query: 382 PRSTYMLPGKIGNMLFPHQREGLRWLWS-----LHCQGKGGILGDDMGLGKTMQICGFLA 436
P ++ K+ +L PHQ G+++L+ + + KG I+ D+MGLGKT+Q +
Sbjct: 242 PDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMW 301
Query: 437 GLFHS-----RLIKRALVVAPKTLLSHWIKELTA-VGLSAKIREYFGTCVKTRQYELQYV 490
L R I++ ++V P +L+ +W E+ +G A + T+ EL
Sbjct: 302 TLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGA-LTPLAVDGKSTKNSELGTA 360
Query: 491 LQD----KG------VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
LQ +G VL+ +Y+ +R N L G+ E G M+ DEGH +K
Sbjct: 361 LQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGT-----EVG-------LMLADEGHRLK 408
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N + +L + R+I+SGTPIQN+L E ++L NF P LG FK+ YE IL
Sbjct: 409 NGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAIL 468
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
+G D A D E+ G EL + + + +RR N++ S L K E +++
Sbjct: 469 KGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT-NDIL-------SKYLPIKYEYVLFT 520
Query: 661 RLTSCQRQLYEAFLNSEIVLSAFDGS---PLAALTILKKICDHPLLLTKRAAEDVLDGMD 717
L+ Q+ +Y F+ S + G+ PL A+ +LKK+C+HP LL EDV +G +
Sbjct: 521 GLSPMQKDIYNHFITSPEIKKLMKGTGSQPLKAIGMLKKLCNHPDLLD--LPEDV-EGSE 577
Query: 718 SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFS 776
+ P+D +A A ++ +E S K + L K+ E + +++ S
Sbjct: 578 EFI-PDD--YQSSIA---GGSASRN--REIQTWFSGKFLILERFLQKINKETDDKIVLIS 629
Query: 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLG 834
+ L+LI++ K Y LR+DGT + R K+V+ F + + P IFLL+S+ GG G
Sbjct: 630 NYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPN-GPEFIFLLSSKAGGCG 688
Query: 835 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 894
+ L A+R++++DP WNP++D Q++ R +R GQKKD +YR ++ GT+EEKI+++Q K
Sbjct: 689 INLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKM 748
Query: 895 GLFKTATEHKEQI-RYFSQQDLREL 918
L + KE + R FS +LR+L
Sbjct: 749 SLSSCVVDEKEDVERLFSVANLRQL 773
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 659 (237.0 bits), Expect = 4.1e-61, P = 4.1e-61
Identities = 200/592 (33%), Positives = 292/592 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1247 LDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1305
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFG----TCV 480
G S+L + +LVV P TL HW+ E VG REY T
Sbjct: 1306 GDHCQRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE---VGKFCS-REYLNPLHYTGP 1361
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
T + LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IK
Sbjct: 1362 PTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIK 1409
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N T+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL
Sbjct: 1410 NGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPIL 1469
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
D + RE+ G L ++ P+ LRR+K +V + L K +
Sbjct: 1470 ASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYC 1521
Query: 661 RLTSCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP 701
L+ Q QLYE F S E V SA G AL L+K+C+HP
Sbjct: 1522 TLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHP 1581
Query: 702 -LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILS 760
L+LT + E N + + ++H A K +Q + C + S
Sbjct: 1582 ALVLTPQHPE--------FKNTTEKLAVQNSSLHDIQHAPKLSALKQL-LLDCGLGNGTS 1632
Query: 761 L---LDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVND 814
+ ++ + H +LIF Q + ML++++ + +LR+DG+ R IV+
Sbjct: 1633 SESGTESVVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSR 1691
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V VY
Sbjct: 1692 FNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1751
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
RL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1752 RLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1803
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 661 (237.7 bits), Expect = 3.1e-60, Sum P(2) = 3.1e-60
Identities = 202/592 (34%), Positives = 293/592 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1244 LDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1302
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFG----TCV 480
G S+L + +LVV P TL HW+ E VG REY T
Sbjct: 1303 GDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE---VGKFCS-REYLNPLHYTGP 1358
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
T + LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IK
Sbjct: 1359 PTERIRLQHQVKRHNLVVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIK 1406
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N T+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL
Sbjct: 1407 NGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPIL 1466
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
D + RE+ G L ++ P+ LRR+K +V + L K +
Sbjct: 1467 ASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYC 1518
Query: 661 RLTSCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP 701
L+ Q QLYE F S E V SA G AL L+K+C+HP
Sbjct: 1519 TLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHP 1578
Query: 702 -LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKI---SF 757
L+LT + E N + A+ ++H A K +Q + C + S
Sbjct: 1579 ALVLTPQHPE--------FKNTTEKLAAQNSSLHDIQHAPKLSALKQL-LLDCGLGNGST 1629
Query: 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVND 814
S + ++ + H +LIF Q + ML++++ + +LR+DG+ R IV+
Sbjct: 1630 SESGTESVVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSR 1688
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQ K V VY
Sbjct: 1689 FNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVY 1748
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
RL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1749 RLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1800
Score = 41 (19.5 bits), Expect = 3.1e-60, Sum P(2) = 3.1e-60
Identities = 21/97 (21%), Positives = 45/97 (46%)
Query: 50 RRLCKVSSRDVDNTENRAVVDDEPNFSDITDFD-SPLQSKTVSAMVN---IESRAVIDDG 105
+R+ K+ ++ +R V+ +D TD + + KT + ++N ++S+ +ID+
Sbjct: 213 KRMAKLFAKQ----RSRDAVETNEKSNDSTDGEPEEKRRKTSNVVINQSAVDSKVLIDNI 268
Query: 106 PKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDL 142
P DS P + E + + + ++ NDL
Sbjct: 269 P--------DSSP---LIEETNEWPLESFCEELCNDL 294
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 364 (133.2 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 113/349 (32%), Positives = 169/349 (48%)
Query: 372 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQI 431
E GS L + +P L +Q+ GL WL +LH GIL D+MGLGKT+Q
Sbjct: 425 EPNGSPVLHANK--IQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQT 482
Query: 432 CGFLAGLF-HSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV 490
LA L L++ P +++ +W E KI Y+G + ++ +
Sbjct: 483 IALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWY 542
Query: 491 LQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 549
D V +T+Y +V + + R W YMILDE H IKN +QR +S
Sbjct: 543 KPDTWHVCITSYQLVLQDHQPFRRKK------------WQYMILDEAHNIKNFRSQRWQS 590
Query: 550 LLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN-------KWFKEKYELPILRG 602
LL + HR++++GTP+QNNL ELW+L F P + N K F++ + P+ R
Sbjct: 591 LLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRL 650
Query: 603 NDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRL 662
++ D + VAK L ++PY LRRLK EV + + K E +V+ +L
Sbjct: 651 IEE-GQDMNPEAMNTVAK-LHRVLRPYLLRRLKTEVEKQ--------MPAKYEHVVYCQL 700
Query: 663 TSCQRQLYEAFLNS----EIVLSAFDGSPLAALTILKKICDHPLLLTKR 707
+ QR LY+ F+N EI+ S S + L L+K+C+HP L +R
Sbjct: 701 SKRQRFLYDDFINRARTREILASGNFMSIINCLMQLRKVCNHPNLHEER 749
Score = 342 (125.4 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 100/308 (32%), Positives = 156/308 (50%)
Query: 649 TLSKKNEMIVWLRLT----SCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 704
TL K++ + L T SC E N + ++ F A +T + D P L
Sbjct: 896 TLYAKDDPLYLLNTTKALRSCILSTEERASNMKEIIQRF-----ACITPKAVVVDLPELF 950
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISC-KISFILSLLD 763
K D+L + +NP A + +LA +A D Q+D C K+ + LL
Sbjct: 951 CKTIPRDLLYEVSRKINPLHQA-STRLA-----IAFPDKRLLQYD---CGKLQVLDRLLK 1001
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI 823
L+ GH VLIF+Q K+L+++++ + G+++LR+DG TK R + F D P+
Sbjct: 1002 DLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPV 1061
Query: 824 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883
F+L+++ GGLG+ LT AD VI D WNP D Q+ DR++RIGQ +DV +YRL++ TVE
Sbjct: 1062 FILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVE 1121
Query: 884 EKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQ 942
+ R+ K L K + E +F + D+ +L L D SL + + + G
Sbjct: 1122 SNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLD----DESLKKVKADSDSGST 1177
Query: 943 HNMDESLE 950
N +E+ E
Sbjct: 1178 KN-EENWE 1184
Score = 151 (58.2 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 83/369 (22%), Positives = 151/369 (40%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKR--NEPRWVDNNLVSARESFESNLDGEEDG 273
E +D+ S D+ ++E TE + ++ ++ R V+ + S R S ++
Sbjct: 283 EETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNKHPPSLRRS--RRFFAKKSY 340
Query: 274 GSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVI 333
+S+++G+ V KK + K ++DG++ +G +
Sbjct: 341 NHVSDLDGE-----VIVMKKEDITDGVSTKKDLNDGDQNEVPLHDTGSSSSLS------L 389
Query: 334 VSGKLVVNRPDRR---DGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPG 390
+ + V ++ RR DG K + +G + + D E GS L + +P
Sbjct: 390 LYNEDVASKKKRRVNDDGLARKKSIAG---ISEQRKFD---EPNGSPVLHANK--IQVPF 441
Query: 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALV 449
L +Q+ GL WL +LH GIL D+MGLGKT+Q LA L L+
Sbjct: 442 LFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWGPHLI 501
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG-VLLTTYDIVRNNS 508
+ P +++ +W E KI Y+G + ++ + D V +T+Y +V +
Sbjct: 502 IVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDH 561
Query: 509 KSLRGSSF---ISDEAGDDDAI----WDYMI-LDEGHLIKNPSTQRAKSLLEIPSAHRII 560
+ R + I DEA + W ++ + H + T +L+E+ S +
Sbjct: 562 QPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFL 621
Query: 561 ISGTPIQNN 569
+ QNN
Sbjct: 622 MPAGVTQNN 630
Score = 56 (24.8 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 28/148 (18%), Positives = 68/148 (45%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDD 71
EAE T+D LS + + E + +E +K K+ + R+ V+ +R
Sbjct: 281 EAE-ETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRV--VNKHPPSLRRSRRFFAK 337
Query: 72 EPNFSDITDFDSP-LQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAK-TVSENDNY 129
+ +++ ++D D + K + ++ ++DG + +++ + D+ + ++ N++
Sbjct: 338 K-SYNHVSDLDGEVIVMKKEDITDGVSTKKDLNDGDQ-NEVPLHDTGSSSSLSLLYNEDV 395
Query: 130 KGGNEIRDILND--LSARLEILSIDKRR 155
+ R +ND L+ + I I ++R
Sbjct: 396 ASKKKRR--VNDDGLARKKSIAGISEQR 421
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 649 (233.5 bits), Expect = 5.3e-60, P = 5.3e-60
Identities = 196/592 (33%), Positives = 293/592 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1241 LDGKKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1299
Query: 437 G--------LFHSRLIKR----ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 484
G ++L+ +LVV P TL HW+ E+ + T T +
Sbjct: 1300 GDHCLRAQEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTER 1359
Query: 485 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544
LQY ++ +++ +YD+VRN+ R F +Y ILDEGH+IKN T
Sbjct: 1360 ARLQYQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIKNGKT 1407
Query: 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604
+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL D
Sbjct: 1408 KLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRD 1467
Query: 605 KHALDREKRIGSAVAKE-LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
+ RE+ +A E L ++ P+ LRR+K +V + L K + L+
Sbjct: 1468 ARSSSREQEAVGVLAMEALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYCVLS 1519
Query: 664 SCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP-LL 703
Q QLYE F S E V S G AL L+K+C+HP L+
Sbjct: 1520 PLQVQLYEDFAKSRAKCDIDETVSSISLREETEKPKLKATGHVFQALQYLRKLCNHPALV 1579
Query: 704 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMH---IADVAEKDDFQEQHDNI-SCKIS--- 756
LT + +PE + E+LA H + D+ + C +
Sbjct: 1580 LTTQ-------------HPEYKRITEQLAAHNSSLRDIQHAPKLSALKQLLLDCGLGNGG 1626
Query: 757 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI---GSKGYKFLRIDGTTKASDRVKIVN 813
S + ++ + H +LIF Q + ML++++ + +LR+DG+ A R IV+
Sbjct: 1627 SSESGTEAVVAQ-HRILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVS 1685
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V V
Sbjct: 1686 RFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNV 1745
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQ 924
YRL+T GT+EEKI Q FK + T ++ ++ + L +L +L K+
Sbjct: 1746 YRLITRGTLEEKIMGLQKFKMNIANTVISQENASLQSMGTEQLLDLFTLDKK 1797
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 661 (237.7 bits), Expect = 6.6e-60, Sum P(2) = 6.6e-60
Identities = 203/596 (34%), Positives = 294/596 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1248 LDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1306
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFG----TCV 480
G S+L + +LVV P TL HW+ E VG REY T
Sbjct: 1307 GDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE---VGKFCS-REYLNPLHYTGP 1362
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
T + LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IK
Sbjct: 1363 PTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIK 1410
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N T+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL
Sbjct: 1411 NGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPIL 1470
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
D + RE+ G L ++ P+ LRR+K +V + L K +
Sbjct: 1471 ASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYC 1522
Query: 661 RLTSCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP 701
L+ Q QLYE F S E V SA G AL L+K+C+HP
Sbjct: 1523 TLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHP 1582
Query: 702 -LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH---IADVAEKDDFQEQHDNI-SCKI- 755
L+LT + +PE AEKLA+ + D+ + C +
Sbjct: 1583 ALVLTPQ-------------HPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG 1629
Query: 756 --SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVK 810
S S + ++ + H +LIF Q + ML++++ + +LR+DG+ R
Sbjct: 1630 NGSTSESGTESVVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHS 1688
Query: 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
IV+ F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+
Sbjct: 1689 IVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1748
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
V VYRL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1749 VNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804
Score = 38 (18.4 bits), Expect = 6.6e-60, Sum P(2) = 6.6e-60
Identities = 16/93 (17%), Positives = 41/93 (44%)
Query: 50 RRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFS 109
+R+ K+ ++ +R V+ +D TD + + + ++ N+ VI+ S
Sbjct: 213 KRMAKLFAKQ----RSRDAVETNEKSNDSTDGEPEEKRRKIA---NV----VINQSANDS 261
Query: 110 DITVFDSPPKAKTVSENDNYKGGNEIRDILNDL 142
+ + + P + + E + + + ++ NDL
Sbjct: 262 KVLIDNIPDSSSLIEETNEWPLESFCEELCNDL 294
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 607 (218.7 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 184/577 (31%), Positives = 294/577 (50%)
Query: 396 LFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 444
L PHQREG+ +L+ + G+ G IL D+MGLGKT+Q + G + + +I
Sbjct: 192 LRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 251
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDI 503
K+ L+V P +L+++W KE S +I+ + T + E ++ VL+ +Y++
Sbjct: 252 KKTLIVTPGSLVNNWRKEFQKWLGSERIKIF--TVDPDHKVE-EFTKSPLYSVLIISYEM 308
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
+ + ++ F D +I DEGH +KN + + +L +P RII++G
Sbjct: 309 LLRSLDQIKNIKF------------DLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTG 356
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QN+L+E ++L +F P +LG +++ YE PI+ A EK +G A EL
Sbjct: 357 TPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELGERRACELT 416
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF 683
+ LRR + EV ++ L K E +V+ R + Q +LY LNS+ V
Sbjct: 417 CLTGLFILRRTQ-EVINK-------YLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCL 468
Query: 684 DG-----SPLAALTILKKICDHPLLLTKRAAE-DVLDGMDSMLNPEDAALAEKLAMHIAD 737
G S L + LKK+C+HP LL E + D N E + L + D
Sbjct: 469 QGLMENSSHLICIGALKKLCNHPCLLFSSVKEKECSSAWDE--NEERRLYEDLLKVFPPD 526
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
+E+ + +S +L+++ +L P VL+ + T+ LN++QE GY
Sbjct: 527 YNPLMFAEEESGKLQV-LSKLLAVIHELRPAEKVVLVSNYTQT-LNILQEVCRRHGYGCT 584
Query: 798 RIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD
Sbjct: 585 RLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDI 644
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFSQQ 913
Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G T+ + I+ FS +
Sbjct: 645 QAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTKTSDHIQ-FSVE 703
Query: 914 DLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLE 950
+L+ L +L + V T L E +++ +SLE
Sbjct: 704 ELKNLFTLHENSHCV--THDLLDCECTGENHPGDSLE 738
Score = 37 (18.1 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 32 SRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTEN 65
S ++ + P+K + +CK+SS++ N +N
Sbjct: 111 SGALNSSQTPKKCTSNPFKSVCKLSSKE--NRQN 142
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 651 (234.2 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 190/583 (32%), Positives = 293/583 (50%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1258 LDGRKLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1316
Query: 437 G--LFHSRLIKR----------ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 484
G ++ R ++VV P TL HW+ E+ + T T +
Sbjct: 1317 GDHFLRAQEYTRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCSKEFLNPLHYTGPPTER 1376
Query: 485 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544
LQ+ ++ +++ +YD+VRN+ + R F +Y ILDEGH+IKN T
Sbjct: 1377 ARLQHQVKKHNLIVASYDVVRNDVEFFRDIKF------------NYCILDEGHVIKNGKT 1424
Query: 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604
+ +K++ ++ + +R+I+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL D
Sbjct: 1425 KLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRD 1484
Query: 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTS 664
+ RE+ G + L ++ P+ LRR+K++V + L K + L+
Sbjct: 1485 AKSSSREQEAGVLAMEALHRQVLPFLLRRMKDDVLQD--------LPPKIIQDYYCNLSP 1536
Query: 665 CQRQLYEAFLNSEIVLSAFD-------------------GSPLAALTILKKICDHP-LLL 704
Q QLYE F S ++ D G AL L+K+C+HP L+L
Sbjct: 1537 LQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLRKLCNHPALVL 1596
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 764
T + E + L+ + ++L + H ++ S S S +
Sbjct: 1597 TPQHPE--YKHITEQLSTQHSSLRD--IQHAPKLSALKQLLLDCGLGSAGASD--SGTEA 1650
Query: 765 LIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVA 821
++ + H VLIF Q + ML+++++ + G +LR+DG+ +A R IV+ F
Sbjct: 1651 VVAQ-HRVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSI 1709
Query: 822 PIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 881
+ LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V VYRL+T GT
Sbjct: 1710 DVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1769
Query: 882 VEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPK 923
+EEKI Q FK + T ++ ++ + L L +L K
Sbjct: 1770 LEEKIMGLQKFKMTIANTVISQENASLQSMGTEQLLNLFTLDK 1812
Score = 46 (21.3 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 28 DHVESRSVIDEE-KP-----QKVKIEGRRRL-CKVSSRDVDNTE 64
+H+ + +ID E +P QK K + +L K SRDVD+ E
Sbjct: 198 NHLPAAELIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDVDSNE 241
Score = 40 (19.1 bits), Expect = 5.9e-59, Sum P(2) = 5.9e-59
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 165 DFSRLVKNGDTGQGSKG 181
D SRL+K+G + GS G
Sbjct: 107 DISRLLKHGASLLGSAG 123
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 658 (236.7 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 202/596 (33%), Positives = 294/596 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1249 LDGKKLENYEIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1307
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFG----TCV 480
G S+L + +LVV P TL HW+ E VG REY T
Sbjct: 1308 GDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE---VGKFCS-REYLNPLHYTGP 1363
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
T + LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IK
Sbjct: 1364 PTERVRLQHQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIK 1411
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
N T+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL
Sbjct: 1412 NGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPIL 1471
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
D + RE+ G L ++ P+ LRR+K +V + L K +
Sbjct: 1472 ASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYC 1523
Query: 661 RLTSCQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP 701
L+ Q QLYE F S E V SA G AL L+K+C+HP
Sbjct: 1524 TLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHP 1583
Query: 702 -LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH---IADVAEKDDFQEQHDNI-SCKI- 755
L+LT + +PE + EKLA+ + D+ + C +
Sbjct: 1584 ALVLTPQ-------------HPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG 1630
Query: 756 --SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVK 810
S S + ++ + H +LIF Q + ML++++ + +LR+DG+ R
Sbjct: 1631 NGSTSESGTESIVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHS 1689
Query: 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
IV+ F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+
Sbjct: 1690 IVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1749
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
V VYRL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1750 VNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1805
Score = 37 (18.1 bits), Expect = 1.9e-59, Sum P(2) = 1.9e-59
Identities = 16/93 (17%), Positives = 41/93 (44%)
Query: 50 RRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFS 109
+R+ K+ ++ +R V+ +D TD + + + ++ N+ VI+ S
Sbjct: 213 KRMAKLFAKQ----RSRDAVETNEKSNDSTDGEPEEKRRKIA---NV----VINQSANDS 261
Query: 110 DITVFDSPPKAKTVSENDNYKGGNEIRDILNDL 142
+ + + P + + E + + + ++ NDL
Sbjct: 262 KVLIDNIPDSSPLIEETNEWPLESFCEELCNDL 294
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 657 (236.3 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 197/592 (33%), Positives = 291/592 (49%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLA 436
L G + Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q IC LA
Sbjct: 1248 LDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSIC-ILA 1306
Query: 437 G--------LFHSRLIK----RALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 484
G S+L + +LVV P TL HW+ E+ + T T +
Sbjct: 1307 GDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTER 1366
Query: 485 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544
LQ+ ++ +++ +YD+VRN+ R F +Y ILDEGH+IKN T
Sbjct: 1367 IRLQHQVKRHNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIKNGKT 1414
Query: 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604
+ +K++ ++ + +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL D
Sbjct: 1415 KLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRD 1474
Query: 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTS 664
+ RE+ G L ++ P+ LRR+K +V + L K + L+
Sbjct: 1475 ARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYCTLSP 1526
Query: 665 CQRQLYEAFLNS-------EIVLSAF------------DGSPLAALTILKKICDHP-LLL 704
Q QLYE F S E V SA G AL L+K+C+HP L+L
Sbjct: 1527 LQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1586
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMH---IADVAEKDDFQEQHDNI-SCKI---SF 757
T + +PE + EKLA+ + D+ + C + S
Sbjct: 1587 TPQ-------------HPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGST 1633
Query: 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVND 814
S + ++ + H +LIF Q + ML++++ + +LR+DG+ R IV+
Sbjct: 1634 SESGTESVVAQ-HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSR 1692
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
F + LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V VY
Sbjct: 1693 FNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1752
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
RL+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1753 RLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804
Score = 38 (18.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 16/93 (17%), Positives = 41/93 (44%)
Query: 50 RRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFS 109
+R+ K+ ++ +R V+ +D TD + + + ++ N+ VI+ S
Sbjct: 213 KRMAKLFAKQ----RSRDAVETNEKSNDSTDGEPEEKRRKIA---NV----VINQSANDS 261
Query: 110 DITVFDSPPKAKTVSENDNYKGGNEIRDILNDL 142
+ + + P + + E + + + ++ NDL
Sbjct: 262 KVLIDNVPESSSLIEETNEWPLESFCEELCNDL 294
Score = 37 (18.1 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 122 TVSENDNYKGGNEIRD 137
T S DN KG N +D
Sbjct: 943 TQSGQDNSKGSNSEKD 958
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 643 (231.4 bits), Expect = 2.6e-59, P = 2.6e-59
Identities = 186/546 (34%), Positives = 276/546 (50%)
Query: 379 LSGPRS--TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA 436
L P+S Y +P I L +Q+ G+ WLW L+ GIL DDMGLGKT+Q LA
Sbjct: 1332 LFNPKSIPNYKVPVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILA 1391
Query: 437 G-LFHSRLIKRA----LVVAPKTLLSHWIKELTAV---GLSAKIREYFGTCVKTRQYELQ 488
G H + A LV+ P TL HW+ E+ G + Y+G V R+ +L+
Sbjct: 1392 GDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVG-RE-KLR 1449
Query: 489 YVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 547
+ K +++ +YD VR + G F +Y +LDEGH+IKN T+ +
Sbjct: 1450 SDIGTKCNLVVASYDTVRKDIDFFSGIHF------------NYCVLDEGHIIKNGKTKSS 1497
Query: 548 KSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 607
K++ + + HR+I+SGTPIQNN+ ELW+LF+F P LG K F +++ PIL D +
Sbjct: 1498 KAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKS 1557
Query: 608 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQR 667
+E+ G + L ++ P+ LRR+K +V + L K + L+ Q
Sbjct: 1558 SAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKD--------LPPKITQDLLCELSPLQL 1609
Query: 668 QLYEAFLNSEI--VLSAFDGSPLA---------------ALTILKKICDHPLLLTKRAAE 710
+LYE F N + L S A AL L+ +C+HP L+ +++ E
Sbjct: 1610 RLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEE 1669
Query: 711 DVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGH 770
L + S L +++L + H A + + C I + + H
Sbjct: 1670 --LTKVTSQLALSNSSLDD--IEHSAKLPALKQLL-----LDCGIGVQTESVSQ-----H 1715
Query: 771 NVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827
LIF Q + ML+++++ + + +LR+DG+ AS R IVN+F + LLT
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLT 1775
Query: 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
+ VGGLGL LT AD VI V+ WNP D Q++DRA+RIGQKK V VYRL+T ++EEKI
Sbjct: 1776 TMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIM 1835
Query: 888 RKQIFK 893
Q FK
Sbjct: 1836 GLQKFK 1841
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 635 (228.6 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 222/745 (29%), Positives = 369/745 (49%)
Query: 221 EYEESKGDDVADEEQE-TENVGIGLK-------RNEPRWVDNNLVSARESFESNLDGEED 272
E EES+G E +E T G LK + + + +++ + + N DG+E
Sbjct: 210 EKEESEGSGKDSETEEVTMKQGQSLKAAMAKAQKEQKKKAESDEDWEEDEDDMNADGDET 269
Query: 273 GGSLSEVEGDEHLSRVHETKKHHQ-RQKKNEPKR--VHDGERFNGQ--SFVSGGR--EEY 325
S++E E ++ ETK + R+ N+ K+ + R N + FV R E Y
Sbjct: 270 PSDDSDIE--ERRAKRGETKNQKECREFFNKAKKEDLLQQARINDKIADFVLANRPFEIY 327
Query: 326 DDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVN-VLDDYSDDS--VLEDEGSITLSGP 382
++ K V + + + G+++ +LDD D + V +D T GP
Sbjct: 328 G----AMVAKMKGVTRGTNAIEAYMEFLEKRGILSRILDDCKDHAHTVTKDFERCT-EGP 382
Query: 383 RSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR 442
+L K G L +Q G++WL ++ + ILGD+MGLGKT+QI FL+ L
Sbjct: 383 LQLPLL--KEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIG 440
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLT 499
L+V P + + +WI E S ++ Y+G+ R++ V + K V+LT
Sbjct: 441 KTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTYYGS-QDERKHLRHRVKKQKDHIDVILT 499
Query: 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
TY++V SKS D+ + +Y+I DEGH++KN ++R + L+++ +I
Sbjct: 500 TYNMV--TSKS-------DDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKI 550
Query: 560 IISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL--------PILRGNDKHALDRE 611
+++GTP+QNNL EL +L F ++ NK+ ++ L P L +K AL ++
Sbjct: 551 LLTGTPLQNNLIELISLMYFVLSKVF--NKYCEDITHLLQHFKQLGPALDTKNK-ALYQQ 607
Query: 612 KRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYE 671
RI +E + +QPY LRRLKN+V +L K+E I+ + + Q+QLY+
Sbjct: 608 DRI-----EEAKAILQPYILRRLKNQVL--------GSLPSKSEQIIEVEMKKPQKQLYD 654
Query: 672 AFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
+ + + S G +L L++ +HPLL + LD + ML + A A+K
Sbjct: 655 NIVEA-LQQSEESGDSYGSLMRLRQAANHPLLRRSEYTDQKLDKIAKMLCLREKAYADKK 713
Query: 732 AMHIA-DVAEKDDFQEQH--DNISCKISFILS-----------LLDKLIPE----GHNVL 773
H++ D+A D + + C F+L+ LD ++PE G VL
Sbjct: 714 WQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSGKCEQLDVMLPEIQKKGDKVL 773
Query: 774 IFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 833
IFSQ ML++++ + +GY + R+DG T DR +++N+F +FLL+++ GGL
Sbjct: 774 IFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGL 833
Query: 834 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
G+ LT A+ +I+ D +NP D Q+ DR +R+GQ+K V V RL++ GTVE + K
Sbjct: 834 GINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKK 893
Query: 894 GGLFKTATEH-KEQIRYFSQQDLRE 917
L K T+ K Q+ + ++L+E
Sbjct: 894 LQLEKQVTDGVKGQLDEDALRELKE 918
Score = 41 (19.5 bits), Expect = 5.2e-59, Sum P(2) = 5.2e-59
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNE 248
+ES+ D + DEE + G G ++ E
Sbjct: 188 DESEDDFINDEEISEKGSGKGSEKEE 213
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 648 (233.2 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 186/584 (31%), Positives = 291/584 (49%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--L 443
+ +P I L +Q+EG+ WL L+ GIL DDMGLGKT+Q +A ++R L
Sbjct: 1348 FSIPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKL 1407
Query: 444 IKRA----------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 493
+ + L+V P TL HW +EL+ K+ Y G + +++ ++
Sbjct: 1408 FEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGP--PAERAKIRSKMKK 1465
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
V++T+YDI RN+ DE D W+Y +LDEGH+IKN + K++ +
Sbjct: 1466 SDVVVTSYDICRNDV----------DELVKID--WNYCVLDEGHVIKNARAKLTKAVKSL 1513
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
S HR+I+SGTPIQNN+ ELW+LF+F P LG K F+E++ PI D + +E+
Sbjct: 1514 RSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERE 1573
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHE-------DDVTSSATLSKK--NEMIVWLRLTS 664
G+ + + +++ P+ LRRLK +V + D + L +K N+ + L +
Sbjct: 1574 RGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINE 1633
Query: 665 -CQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSMLNP 722
+ E + S AL ++K+C+HP L+LT++ + + + L
Sbjct: 1634 ELEDDETEKTQGTRKKKSQ-KAHIFQALQYMRKLCNHPALILTEKHPKR--NAIVKQLAK 1690
Query: 723 EDAALAEKLAMHIADVAEKDDFQEQHD--NISCKISFILSLLDKLIPEGHNVLIFSQTRK 780
E++ L + H + N S + I S L + E H VLIF Q +
Sbjct: 1691 ENSGLHD--LKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSE-HRVLIFCQLKD 1747
Query: 781 MLNLIQESI---GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTL 837
ML+++++ + ++R+DG+ + + R + V F + LLT+ VGGLGL L
Sbjct: 1748 MLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNL 1807
Query: 838 TKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLF 897
T AD VI V+ WNP D Q++DRA+RIGQKK V VYRL+T G +EEKI Q FK +
Sbjct: 1808 TGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVA 1867
Query: 898 KTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGD 941
T +Q S ++L L D T Q + +E +
Sbjct: 1868 STVVN--QQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESE 1909
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 16/84 (19%), Positives = 41/84 (48%)
Query: 15 VRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPN 74
++T + + S V S ++ + K++ E ++S+R + E + +VD P+
Sbjct: 104 IKTEEGAPASSQSQVVVSSNLTSNSEVSKLEEE------RLSTRS-HSQEIKPIVDFGPD 156
Query: 75 FSDITDFDSPLQSKTVSAMVNIES 98
+ ++ L+ K +++++ ES
Sbjct: 157 EETAKELNTELKGKFENSLLSFES 180
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 24/96 (25%), Positives = 38/96 (39%)
Query: 2 YLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-------KVKIEGRRR-LC 53
YLDD + V +N S S E ++ I+ KP+ V + R+R
Sbjct: 229 YLDDSIMNDLGDNVGSN--SKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNAL 286
Query: 54 KVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKT 89
K +R + N++ V+D P + S KT
Sbjct: 287 KRKARQMKNSQKVRVIDVAPTLVHQQNSTSSADKKT 322
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 47/183 (25%), Positives = 74/183 (40%)
Query: 211 VGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGE 270
+GG+VE+V + ++ V EE E G +P ++ A S +S +
Sbjct: 65 IGGIVENVP-VWNPNRTSPVKKEETEDLPSFNGDTEEKP-FIKTE-EGAPASSQSQVVVS 121
Query: 271 EDGGSLSEVEGDEHLSRVHETKKHHQRQKK------NEPKRVHDGERFNGQSFVSG--GR 322
+ S SEV E R+ T+ H Q K +E G+ F +
Sbjct: 122 SNLTSNSEVSKLEE-ERL-STRSHSQEIKPIVDFGPDEETAKELNTELKGK-FENSLLSF 178
Query: 323 EEYDDEDDCVIVSGKLVVNRPDRR-D-GKLNKSAH-----SGLVNVLD---DYSDDSVLE 372
E +D + V+ +GK ++ R D N S H S L + LD +Y DDS++
Sbjct: 179 ESFDIAN--VLKAGKKLLGSASRDYDVNPANYSTHYLQQLSNLKSRLDLAGEYLDDSIMN 236
Query: 373 DEG 375
D G
Sbjct: 237 DLG 239
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 626 (225.4 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 189/580 (32%), Positives = 304/580 (52%)
Query: 396 LFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 444
L PHQ+EG+ +L+ + G+ G IL D+MGLGKT+Q + G + + +I
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD-KGVLLTTYDI 503
K+ L+V P +L+++W KE S +I+ + T + + E +++ VL+ +Y++
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIF--TVDQDHKVE-EFIKSIFYSVLIISYEM 412
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
+ + ++ F D +I DEGH +KN + + +L+ + RII++G
Sbjct: 413 LLRSLDQIKNIKF------------DLLICDEGHRLKNSAIKTTTALISLSCEKRIILTG 460
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TPIQN+L+E +AL +F P +LG +++ YE PI+ + A + EK +G A EL
Sbjct: 461 TPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELT 520
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF 683
+ LRR + E+ ++ L K E +V+ R + Q +LY LNS++V
Sbjct: 521 CLTGLFILRRTQ-EIINK-------YLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCL 572
Query: 684 DG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADV 738
G SP L + LKK+C+HP LL E N E + L++ AD
Sbjct: 573 QGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDK-NEEKSLYKGLLSVFPADY 631
Query: 739 AEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
F E+ +S +L+++ +L P VL+ + T+ LN++QE GY + R
Sbjct: 632 NPLL-FTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQT-LNILQEVCKRHGYAYTR 689
Query: 799 IDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857
+DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD Q
Sbjct: 690 LDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQ 749
Query: 858 SVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQD 914
++ R +R GQK V +YRL+T GT+EEKIY++QI K GL T+ E I+ FS ++
Sbjct: 750 AMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEE 808
Query: 915 LRELLSLPKQGFDVSLTQQQLHEE-HGDQHNMDESLEAHI 953
L+ L +L + D +T L E G++ + +SLE I
Sbjct: 809 LKNLFTLHESS-DC-VTHDLLDCECTGEEVHTGDSLEKFI 846
Score = 41 (19.5 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
G I DD G+ Q+ G + HS + R
Sbjct: 195 GVISPDDFSSGRCFQLGGGSTAISHSSQVAR 225
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 359 (131.4 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 79/222 (35%), Positives = 130/222 (58%)
Query: 735 IADVAEKDDFQEQHDNISC-KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG 793
+ ++ F + D C K+ + L+ I +G +L+FS + +ML+++++ + KG
Sbjct: 509 LGGISASKSFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKG 568
Query: 794 YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853
Y F R+DG+T + R +V+DF +FL++++ GGLGL L A+RV++ DP WNPS
Sbjct: 569 YSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPS 628
Query: 854 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQ- 912
D Q+ DR++R GQK+ VVV+RL++ G++EE +Y +Q++K L A K + RYF
Sbjct: 629 HDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETRYFEGV 688
Query: 913 QDLRE----LLSLPKQGFDVS--LTQQQLHEEHGDQHNMDES 948
QD +E L + D+S L + E H D N+DE+
Sbjct: 689 QDCKEFQGELFGISNLFRDLSDKLFTSDIVELHRDS-NIDEN 729
Score = 332 (121.9 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 109/391 (27%), Positives = 185/391 (47%)
Query: 323 EEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYS---DDSVLEDEGSITL 379
E++D +D + K D D + + GL DYS + +L G I +
Sbjct: 69 EDFDHNEDDHKRNIKFDEEEVDEDDERSIEFGRPGLSRAEFDYSGPYEPLMLSSIGEIPI 128
Query: 380 SGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 439
+P I L HQREG++++++L+ GGILGDDMGLGKT+Q FLA ++
Sbjct: 129 ------IHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVY 182
Query: 440 -------HSRLIKR----ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQ 488
S L++ L++ P +++ +W E + K+ Y G+ R L+
Sbjct: 183 GKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGS---NRDMILE 239
Query: 489 YVLQDKGV--LLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546
L+ +GV L+T++D R L G + W+ +I DE H +KN ++
Sbjct: 240 K-LKARGVEVLVTSFDTFRIQGPVLSGIN------------WEIVIADEAHRLKNEKSKL 286
Query: 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKH 606
++ LEI + RI ++GT +QN + EL+ LF + P LG + F++ Y+ P+ G
Sbjct: 287 YEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRAT 346
Query: 607 ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQ 666
A +R +I + L ++ Y LRR K E T + K + +V+ +++ Q
Sbjct: 347 APERFVQIADKRKQHLGSLLRKYMLRRTKEE-------TIGHLMMGKEDNVVFCQMSQLQ 399
Query: 667 RQLYEAFLN-SEIVLSAFDGSPLAALTILKK 696
R++Y+ + EI +P A + LK+
Sbjct: 400 RRVYQRMIQLPEIQCLVNKDNPCACGSPLKQ 430
Score = 51 (23.0 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 19/95 (20%), Positives = 40/95 (42%)
Query: 6 KKPVKVEAE---VRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
+KP K +R +D L H+ S++ +++ + + +R K +VD
Sbjct: 35 RKPPKSSLSQQLLRLDDSYFLPSKHESKISKTQVEDFDHNE---DDHKRNIKFDEEEVDE 91
Query: 63 TENRAVVDDEPNFSDIT-DFDSPLQSKTVSAMVNI 96
+ R++ P S D+ P + +S++ I
Sbjct: 92 DDERSIEFGRPGLSRAEFDYSGPYEPLMLSSIGEI 126
Score = 42 (19.8 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 777 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE 817
Q R+ ++ E G + +F R + DR K++ DF E
Sbjct: 819 QKREKYKMLAEFKGMEILEFSRWVLSASPFDREKLLQDFLE 859
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 378 (138.1 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 124/433 (28%), Positives = 209/433 (48%)
Query: 216 ESVADEYEESKGD--DVADEEQETENVGIGLKRNEPRWV-DNNLVSARESFESNLDGEED 272
E+ + E EE D +V +++ E E V +E D VS E D EED
Sbjct: 13 EAYSSEEEEQVNDQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEED 72
Query: 273 GGSLSEVEGDEHLSRVHETK-KHHQRQKKNEPKRVHDGERFNGQSFVSG---GREEYDDE 328
E E +S+ + + K Q+ KK + +++ D + + + ++ GR +Y +
Sbjct: 73 ----EEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKGKGRIKYLLQ 128
Query: 329 DDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVL-EDEGSITLSGPRSTYM 387
+ P ++ GK + HS + ++ D+ L E+EG I SG
Sbjct: 129 QTELFAHFAKSDPSPSQKKGK-GRGRHSS--KLTEEEEDEECLKEEEGGIVGSGGTRLLT 185
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA 447
P I L +Q GL WL L+ G GIL D+MGLGKT+Q LA L R I
Sbjct: 186 QPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGP 245
Query: 448 -LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVR 505
+VVAPK+ L +W+ E+ + ++ G + R + ++ K + +T++++
Sbjct: 246 HMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAI 305
Query: 506 NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP 565
+LR S W Y+I+DE H IKN ++ +K++ + +R++I+GTP
Sbjct: 306 KEKTTLRRFS------------WRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTP 353
Query: 566 IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625
+QNNL ELWAL NF PE+ + F E +++ G + D+++ V ++L +
Sbjct: 354 LQNNLHELWALLNFLLPEVFSSAETFDEWFQIS---GEN----DQQE-----VVQQLHKV 401
Query: 626 IQPYFLRRLKNEV 638
++P+ LRRLK++V
Sbjct: 402 LRPFLLRRLKSDV 414
Score = 268 (99.4 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 64/175 (36%), Positives = 101/175 (57%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLDKL+P+ VLIFSQ ++L+++++ + +GY++ RIDG T +R + +
Sbjct: 499 LLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYN 558
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+ G +FLL+++ GGLG+ L AD VI+ D WNP D Q+ DRA+RIGQKK+V V+R
Sbjct: 559 KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 618
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR--ELLSLPKQGFDV 928
T +E K+ + K L + Q R Q+ + ELL + + G ++
Sbjct: 619 FCTENAIEAKVIERAYKKLALDALVIQ---QGRLAEQKTVNKDELLQMVRYGAEM 670
Score = 96 (38.9 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 618 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE 677
V ++L + ++P+ LRRLK++V L K E I+ + ++ Q+Q Y+A L +
Sbjct: 394 VVQQLHKVLRPFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKALLQKD 445
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLT-KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
+ + G L I L+K C+HP L G + N L +KL
Sbjct: 446 LEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLP 505
Query: 734 HIAD 737
+ D
Sbjct: 506 KLKD 509
Score = 53 (23.7 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 34/179 (18%), Positives = 75/179 (41%)
Query: 205 GVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFE 264
G +++V V+D+ DD ++E++ E I KR + R + + ++ +
Sbjct: 44 GSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEIS-KREKARLKEMQKMK-KQKIQ 101
Query: 265 SNLDGEE---DGGSLSEVEGD-EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSG 320
LD + D ++ +G ++L + E H + + ++ G +
Sbjct: 102 QILDSQNASIDADMNNKGKGRIKYLLQQTELFAHFAKSDPSPSQKKGKGRGRHSSKLTEE 161
Query: 321 GREE--YDDEDDCVIVSGKL-VVNRPDRRDGKLNKSAHSGLVNVLDDYSD--DSVLEDE 374
+E +E+ ++ SG ++ +P GKL +GL ++ Y + + +L DE
Sbjct: 162 EEDEECLKEEEGGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADE 220
Score = 49 (22.3 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 54 KVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITV 113
+VSS + ++E V+D+ N + + D L++ SA + E A D+ P D V
Sbjct: 8 EVSSDEAYSSEEEEQVNDQAN---VEEDDDELEAVARSAGSDEEDVAP-DEAPVSDDEVV 63
Query: 114 FDSPPKAKTVSENDNYKGGNEIRDILNDLSARL-EILSIDKRRVPKTVDPED 164
P E++ E +I ARL E+ + K+++ + +D ++
Sbjct: 64 ----PVEDDAEEDEE---DEEKAEISKREKARLKEMQKMKKQKIQQILDSQN 108
Score = 47 (21.6 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 722 PEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 777
P++A +++ + + D AE+D+ E+ IS + L + K+ + ++ SQ
Sbjct: 52 PDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQ 107
Score = 39 (18.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDD 71
E +V ++ V + VE + DEE +K +I R + + + + + ++D
Sbjct: 47 EEDVAPDEAPVSDDEVVPVEDDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDS 106
Query: 72 EPNFSDITDFDS 83
+ N S D ++
Sbjct: 107 Q-NASIDADMNN 117
Score = 37 (18.1 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 12 EAEVRTNDCSVLSRDHDHVES--RSV-IDEE 39
E E + ND + + D D +E+ RS DEE
Sbjct: 18 EEEEQVNDQANVEEDDDELEAVARSAGSDEE 48
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 381 (139.2 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 98/275 (35%), Positives = 144/275 (52%)
Query: 379 LSGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG 437
L G + Y LP +I L +Q++G+ WL L+ GIL DDMGLGKT+Q +AG
Sbjct: 1359 LDGSKVENYPLPIRINTELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQTICIIAG 1418
Query: 438 L-FHSRLIKR-----------ALVVAPKTLLSHWIKELTAVGLSAKIRE--YFGTCVKTR 483
+H R+ + +LV+ P +L+ HW E+ + ++ Y G R
Sbjct: 1419 DDYHRRVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMGN-PSER 1477
Query: 484 QYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543
Q + + +D VL+ +YDI+RN+ L F +Y ILDEGH+IKN
Sbjct: 1478 QAQ-RSKFKDHNVLIMSYDIMRNDIDILSEMHF------------NYCILDEGHIIKNAK 1524
Query: 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 603
T+ ++ + S HR+I+SGTPIQNN+ ELW+LF+F P LG K F E Y PIL
Sbjct: 1525 TKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPILASK 1584
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
D +++ G + L ++ P+ LRRLK +V
Sbjct: 1585 DPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDV 1619
Score = 322 (118.4 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 97/277 (35%), Positives = 135/277 (48%)
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSM-LNPEDA---ALAEKLA-----MHIADVAE 740
AL L+K+C HP + M L P D A + KL + +
Sbjct: 1689 ALQYLRKLCGHPSFVLNPEHPQYPSIMKEFKLQPNDILDIAHSPKLVSLKELLLECGIGL 1748
Query: 741 KDDFQEQHDNISCKISFILSLLDKLIPEG---HNVLIFSQTRKMLNLIQESIGSK---GY 794
+ Q+QH S K + + ++ I E H VLIF+Q + ML++++ + K
Sbjct: 1749 SNVQQQQHQQQS-KAAIAAATANETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSV 1807
Query: 795 KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
+LR+DG+ + R IVN F + LLT+ VGGLGL LT AD VI ++ WNP
Sbjct: 1808 TYLRMDGSVETMKRHSIVNQFNSDPTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMK 1867
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQD 914
D Q++DRA+RIGQKK V VYRL+T GT+EEKI Q FK + T H
Sbjct: 1868 DLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMGLQKFKLNIANTVINHDNSS--LQTMS 1925
Query: 915 LRELLSLPKQGFDVSLTQ--QQLHEEHGDQHNMDESL 949
ELL+L FD S Q QQ + +N + S+
Sbjct: 1926 TNELLNL----FDYSDDQKSQQSKSTNLADYNNESSI 1958
Score = 47 (21.6 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 486 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI---KNP 542
+L L+ L+ DIV NNSKS + +E + I M+LD + +N
Sbjct: 198 DLPIKLESMDSLVEDKDIVLNNSKSAIKAKKEKEEKEKKEDI--SMVLDTTGMSARERNK 255
Query: 543 STQRAKSLLE 552
+ ++A++L++
Sbjct: 256 AKRKARNLVK 265
Score = 42 (19.8 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 314 GQSFVSGGREEYDDED-DCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNV-LDDYSDDSVL 371
G V+ G +E+D+E+ D + +L++ ++ KL K GL ++ + S DS++
Sbjct: 157 GAPLVASGGKEFDEEELDPNMDPKELLL----KQKKKLKKQL--GLDDLPIKLESMDSLV 210
Query: 372 EDEGSITLSGPRS 384
ED+ I L+ +S
Sbjct: 211 EDK-DIVLNNSKS 222
Score = 38 (18.4 bits), Expect = 4.8e-28, Sum P(3) = 4.8e-28
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 701 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 750
P LL +R EDVL + + + L + + D + F+E N
Sbjct: 1609 PFLL-RRLKEDVLADLPPKIIQDRYCNLSPLQIRLYDYFSRTQFKETIKN 1657
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 442 RLIKRALVVAPKTLLSHWI 460
+ ++R +V P+ +HW+
Sbjct: 622 KTLERLIVSTPQDSKTHWL 640
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 612 (220.5 bits), Expect = 5.0e-57, P = 5.0e-57
Identities = 183/579 (31%), Positives = 301/579 (51%)
Query: 396 LFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 444
L PHQ+EG+ +L+ + G+ G IL D+MGLGKT+Q + G + + ++
Sbjct: 297 LRPHQKEGIMFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVV 356
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK--GVLLTTYD 502
K+ L+V P +L+++W KE S +I+ + + ++++ + VL+ +Y+
Sbjct: 357 KKTLIVTPGSLVNNWRKEFQKWLGSERIKIF----PVDQDHKVEEFTRSPFYSVLIISYE 412
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ + ++ F G +I DEGH +KN + + +L+ + R+I++
Sbjct: 413 MLLRSLDQIKNVKF-----G-------LLICDEGHRLKNSAIKTTAALISLSCEKRVILT 460
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QN+L+E +AL +F P +LG ++++ YE PI+ A + EK++G A EL
Sbjct: 461 GTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSASEEEKKLGEKRAVEL 520
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA 682
+ LRR + EV ++ L K E +V+ R + Q +LY LNS+ V
Sbjct: 521 TCLTGLFILRRTQ-EVINK-------YLPPKIENVVFCRPGALQIELYRKLLNSQAVRFC 572
Query: 683 FDG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLA-MHIA 736
G SP L + LKK+C+HP LL E + + E+ +L E L + A
Sbjct: 573 LQGLLGNSPHLICIGALKKLCNHPCLLFNSIKEK--ECSSTWDGKEEKSLYEALLDVFPA 630
Query: 737 DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
D +E+ + + +L+++ +L P VL+ + T+ L+++QE GY +
Sbjct: 631 DYNPLMFSEEESGKLQVLLK-LLAVIHELRPTEKVVLVSNYTQT-LDILQEVCKRHGYTY 688
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTD 855
R+DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD
Sbjct: 689 TRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 748
Query: 856 NQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFSQ 912
Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G T E I+ FS
Sbjct: 749 IQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTRTSEHIQ-FSV 807
Query: 913 QDLRELLSLPKQGFDVSLTQQQLHEE-HGDQHNMDESLE 950
++L+ L +L + V T L E GDQ +SLE
Sbjct: 808 EELKNLFTLHESSHCV--THDLLDCECTGDQDGTGDSLE 844
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 611 (220.1 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 186/588 (31%), Positives = 301/588 (51%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWS----LHCQGK--GGILGDDMGLGKTMQICGFL-- 435
+T M+ + L PHQREG+++++ LH G IL DDMGLGKT+Q L
Sbjct: 168 TTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYT 227
Query: 436 ---AGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV-- 490
G + ++K+A++V P +L+S+W E+ + +I + C TR L +
Sbjct: 228 LLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKK-WVGDRI-QLIALCESTRDDVLSGIDS 285
Query: 491 -LQDKG---VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 546
+ + VL+ +Y+ R +S S F E+ D +I DE H +KN T
Sbjct: 286 FTRPRSALQVLIISYETFRMHS-----SKFCQSES------CDLLICDEAHRLKNDQTLT 334
Query: 547 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKH 606
++L + R+++SGTP+QN+L+E +A+ NF P LGD F+ YE PI+ G +
Sbjct: 335 NRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPT 394
Query: 607 ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQ 666
A + EK + + + EL ++ + LRR N + S L K +V ++T+ Q
Sbjct: 395 ATEEEKNLAADRSAELSSKVNQFILRRT-NALL-------SNHLPPKIIEVVCCKMTTLQ 446
Query: 667 RQLYEAFLNSEIVLSAF-DGSP----LAALTILKKICDHPLLL--TKRAAEDVLDGMDSM 719
LY F++S+ + A D + LA +T LKK+C+HP L+ T ++ G ++
Sbjct: 447 STLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENC 506
Query: 720 LN--PEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 777
L P + A D A + + H +S +L+ L + + +++ S
Sbjct: 507 LEFFPAEMFSGRSGAWTGGDGAWVELSGKMH-----VLSRLLANLRRKTDD--RIVLVSN 559
Query: 778 TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLT 836
+ L+L + + Y FLR+DG+T S R K+VN + FLL+S+ GG GL
Sbjct: 560 YTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLN 619
Query: 837 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 896
L A+R+++ DP WNP+ D Q+ R +R GQKK V VYR ++ GT+EEK+Y++Q+ K GL
Sbjct: 620 LIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGL 679
Query: 897 FKTATEHKE------QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 938
K +H++ Q S +DLR+L S G DV + ++HE+
Sbjct: 680 QKVI-QHEQTDNSTRQGNLLSTEDLRDLFSF--HG-DV---RSEIHEK 720
Score = 40 (19.1 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 217 SVADEYEESKGDDVADEEQETEN 239
S D+ +S DD D E E +N
Sbjct: 12 SDCDDSSDSYKDDSQDSEGENDN 34
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 344 (126.2 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 105/330 (31%), Positives = 167/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 530 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 589
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E T K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 590 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 649
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 650 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 697
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 698 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 752
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++++ +LTS Q+ LY+A N E +L + GS
Sbjct: 753 LRRIKKDVENE--------LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 804
Query: 688 LAALTI----------LKKICDHPLLLTKR 707
A T +K+C+HP L ++
Sbjct: 805 QQAQTTTSSLMNLVMQFRKVCNHPELFERQ 834
Score = 318 (117.0 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1119 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND 1178
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1179 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1238
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1239 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1293
Score = 69 (29.3 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 244 LKRNEPRWVDNNLVS--ARESFESNLDGEEDGGSLSEVEGDEHLSR--VHETKKHHQRQK 299
LK++ RW+ + L+S + E+ + D EE+ E E + +LSR +H + H+ +K
Sbjct: 119 LKKSR-RWLKSILLSDESSEADSQSEDNEEEEEDDEEEEEELNLSREELHNMLRLHKYKK 177
Query: 300 KNEPKRVHDGERFNGQSFVSGGREEYD 326
++ K D E Q + +G YD
Sbjct: 178 LHQNKYSKDKELQQYQYYSAGLLSTYD 204
Score = 47 (21.6 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 723 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 762
Score = 44 (20.5 bits), Expect = 6.9e-53, Sum P(4) = 6.9e-53
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 217 SVADEYEESKGDDVADEEQETENVGIGLKRNE 248
S AD E ++ D+E+E E + L R E
Sbjct: 136 SEADSQSEDNEEEEEDDEEEEEE--LNLSREE 165
Score = 39 (18.8 bits), Expect = 6.9e-53, Sum P(4) = 6.9e-53
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE +S ++HH Q K K HD
Sbjct: 241 DEEVSSEESPRRHHH-QTKVFAKFSHD 266
Score = 39 (18.8 bits), Expect = 2.3e-52, Sum P(4) = 2.3e-52
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 216 ESVADEYEESKGDDVADEEQ 235
+S +++ EE + DD +EE+
Sbjct: 139 DSQSEDNEEEEEDDEEEEEE 158
Score = 39 (18.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 758 KDVENELSDKIEIL 771
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 611 PHDRKVIRRFWS 622
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 606 (218.4 bits), Expect = 2.7e-56, P = 2.7e-56
Identities = 181/548 (33%), Positives = 281/548 (51%)
Query: 392 IGNMLFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
I N L PHQREG+ +L+ + G+ G IL D+MGLGKT+Q C L L+++
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQ-CISLVWT----LLRQ 353
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRN 506
V K +L + +T L ++ F + + + ++ V QD V + + +
Sbjct: 354 G-VYGCKPVLKRALI-VTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKV----EEFISS 407
Query: 507 NSKSLRGSSF--ISDEAGDDDAI-WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
S+ S+ + AI ++ +I DEGH +KN S + +L + RII++G
Sbjct: 408 PLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTG 467
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TPIQN+L+E +AL F P +LG +++ YE PI+R + A EK +G A EL
Sbjct: 468 TPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELT 527
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF 683
R+ F+ R EV ++ L K E I++ + T+ Q +LY+ L+S ++ S
Sbjct: 528 -RLTGLFILRRTQEVINK-------FLPPKKENIIFCQPTALQLELYQKLLSSRVISSCL 579
Query: 684 DG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADV 738
G SP L + LKK+C+HP LL K E D +++L E L
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLLFKALKEKCCDPKSD--EHVESSLYEGLTDVFPQD 637
Query: 739 AEKDDFQE-QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
D F E + + + ++ + E V++ S + LN++QE+ GY +
Sbjct: 638 YTSDTFSEIDSGKLQVLVKLLAAIRELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYT 697
Query: 798 RIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DG T S R +IV+ F A IFLL+S+ GG+GL L A +I+ D WNP+TD
Sbjct: 698 RLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDI 757
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFSQQ 913
Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G ++ E I +FS +
Sbjct: 758 QAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI-HFSVE 816
Query: 914 DLRELLSL 921
+LR L +L
Sbjct: 817 ELRNLFTL 824
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 356 (130.4 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 143/488 (29%), Positives = 217/488 (44%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPK 304
KRNE D + RE+ + EE S + + L E H +K +
Sbjct: 694 KRNERVERDLRKKAEREALDRAKKEEELRESRRQARKLDFLITQTELYSHFVGRKMD--- 750
Query: 305 RVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDD 364
R D + VS + D+E+D +L V K + HS L +
Sbjct: 751 REQDLPSATNTASVSEINFDSDEEEDI----RRLAVESAQEAVQKARE--HSQLFDANRQ 804
Query: 365 YSDDSVLED--EGSITLSGPRSTYMLPGKIGNMLF----PHQREGLRWLWSLHCQGKGGI 418
S ++ D EG + P K ML +Q +GL WL +L+ QG GI
Sbjct: 805 QSPNNSSSDMNEGEMNFQNPTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGI 864
Query: 419 LGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFG 477
L D+MGLGKT+Q +A L + I LV+AP + L +W +E+T K Y+G
Sbjct: 865 LADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWG 924
Query: 478 TCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSF---ISDEAGDDDAIWDYMILD 534
+ K R+ ++ + K + TYD N+ + +S+ + D W YMILD
Sbjct: 925 S-TKDRKILRKFWCR-KNM---TYD--ENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILD 977
Query: 535 EGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEK 594
E IK+ S+ R KSLL +R++++GTPIQN ++ELWAL +F P L + F E
Sbjct: 978 EAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEW 1037
Query: 595 YELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN 654
+ I + HA ++ K L ++P+ LRR+K V E L +K
Sbjct: 1038 FSKDI----ESHA-QSNTQLNEQQLKRLHMILKPFMLRRVKKNVQSE--------LGEKI 1084
Query: 655 EMIVWLRLTSCQRQLYEAFLN----SEIVLSAFDGSPLAALTIL------KKICDHPLLL 704
E V+ LT Q+ LY+A +E++ A G +I+ +K+C+HP L
Sbjct: 1085 EKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTVASIMNLVMQFRKVCNHPDLF 1144
Query: 705 TKRAAEDV 712
+ EDV
Sbjct: 1145 ER---EDV 1149
Score = 316 (116.3 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 71/162 (43%), Positives = 103/162 (63%)
Query: 759 LSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
LS LDKL+ E H VLI+ Q +M++L++E + + YK+LR+DG++K S R +V +
Sbjct: 1431 LSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTE 1490
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
+Q +FLL+++ GGLG+ LT AD VI D WNPS D+Q++DRA+RIGQ+K V VY
Sbjct: 1491 WQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVY 1550
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 916
R +T GT+EE+I + K + K E R Q DL+
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGET-RPTKQMDLK 1591
Score = 57 (25.1 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 31/136 (22%), Positives = 52/136 (38%)
Query: 30 VESRSV-IDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSK 88
VE+ + DEEK +K + E R L + + +D + E + + D K
Sbjct: 397 VEAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKK 456
Query: 89 TVSAMV----NIESRAVIDDGPKFSDITVFD-SPPKAKTVSENDNYKGGNEIRDILNDLS 143
T ++ N S+A + K D S K + + D+ K N ND S
Sbjct: 457 TANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDN------NDAS 510
Query: 144 ARLEILSIDKRRVPKT 159
+ ++ D P+T
Sbjct: 511 LQSAGVASDGESSPET 526
Score = 38 (18.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 658
I++ N + ++ +E R R Q R +KN D+ + A + + M+
Sbjct: 641 IIQQNQYNRSTNARKTSQLCGREAR-RWQ---FRTIKNN----KDMQTKAKRAMRETMVF 692
Query: 659 WLRLTSCQRQL 669
W R +R L
Sbjct: 693 WKRNERVERDL 703
Score = 37 (18.1 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 427 KTMQICGFLAGLFHSRLIK 445
KT Q+CG A + R IK
Sbjct: 655 KTSQLCGREARRWQFRTIK 673
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 344 (126.2 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 105/330 (31%), Positives = 167/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 524 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 583
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E T K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 584 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 643
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 644 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 691
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 692 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 746
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++++ +LTS Q+ LY+A N E +L + GS
Sbjct: 747 LRRIKKDVENE--------LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 798
Query: 688 LAALTI----------LKKICDHPLLLTKR 707
A T +K+C+HP L ++
Sbjct: 799 QQAQTTTSSLMNLVMQFRKVCNHPELFERQ 828
Score = 318 (117.0 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1113 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND 1172
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1173 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1232
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1233 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1287
Score = 67 (28.6 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSR--VHETKKHHQRQKKN 301
LK++ +W+ + L+S ES E++ E++ E E + HLSR +H + H+ +K +
Sbjct: 119 LKKSR-KWLKSILLSD-ESSEADSQSEDNE---EEEEEELHLSREELHNMLRLHKYKKLH 173
Query: 302 EPKRVHDGERFNGQSFVSGGREEYD 326
+ K D E Q + +G YD
Sbjct: 174 QNKYSKDKELQQYQYYSAGLLSTYD 198
Score = 47 (21.6 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 717 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 756
Score = 41 (19.5 bits), Expect = 2.2e-52, Sum P(4) = 2.2e-52
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 215 VESVADEYEESKGDDVADEEQETENVGIGLKRNE 248
++S+ E S+ D +++ +E E + L R E
Sbjct: 126 LKSILLSDESSEADSQSEDNEEEEEEELHLSREE 159
Score = 39 (18.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 752 KDVENELSDKIEIL 765
Score = 37 (18.1 bits), Expect = 2.2e-52, Sum P(4) = 2.2e-52
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE LS + HH Q K K HD
Sbjct: 235 DEELSSEESPRCHHH-QTKVFAKFSHD 260
Score = 37 (18.1 bits), Expect = 3.6e-24, Sum P(3) = 3.6e-24
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 605 PHDRKVIRRFWS 616
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 603 (217.3 bits), Expect = 5.8e-56, P = 5.8e-56
Identities = 183/550 (33%), Positives = 282/550 (51%)
Query: 392 IGNMLFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
I N L PHQREG+ +L+ + G+ G IL D+MGLGKT+Q C L L+++
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQ-CISLVWT----LLRQ 353
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRN 506
V K +L + +T L ++ F + + + ++ V QD V + + +
Sbjct: 354 G-VYGCKPVLKRALI-VTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKV----EEFISS 407
Query: 507 NSKSLRGSSF--ISDEAGDDDAI-WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
S+ S+ + AI ++ +I DEGH +KN S + +L + RII++G
Sbjct: 408 PLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTG 467
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TPIQN+L+E +AL F P +LG +++ YE PI+R + A EK +G A EL
Sbjct: 468 TPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELT 527
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF 683
R+ F+ R EV ++ L K E I++ + T+ Q +LY L+S ++ S
Sbjct: 528 -RLTGLFILRRTQEVINK-------FLPPKKENIIFCQPTALQLELYRKLLSSRVISSCL 579
Query: 684 DG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADV 738
G SP L + LKK+C+HP LL K E D D + L + DV
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLLFKALKEKCCDPKS------DEHVESSLYEGLTDV 633
Query: 739 AEKDDFQEQHDNI-SCKISFILSLLDKL--IPEGHNVLIFSQTRKMLNLIQESIGSKGYK 795
+D + I S K+ ++ LL + + V++ S + LN++ E+ GY
Sbjct: 634 FPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYS 693
Query: 796 FLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
+ R+DG T S R +IV+ F A IFLL+S+ GG+GL L A +I+ D WNP+T
Sbjct: 694 YTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPAT 753
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIRYFS 911
D Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G ++ E I +FS
Sbjct: 754 DIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI-HFS 812
Query: 912 QQDLRELLSL 921
++LR L +L
Sbjct: 813 VEELRNLFTL 822
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 378 (138.1 bits), Expect = 6.5e-56, Sum P(3) = 6.5e-56
Identities = 142/504 (28%), Positives = 234/504 (46%)
Query: 222 YEESK-GDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVE 280
Y+ S G +++E+E E + E R V+ +A+E S D E+ SE E
Sbjct: 458 YDASAPGSGNSEDEEEVEANSSDCELEETRDVEE---AAQEDSSSQSDSAEEH---SEDE 511
Query: 281 GDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE-EYDDEDDCVIVSGKLV 339
DEH +++ ++E + E QS +E E DD+DD V + +
Sbjct: 512 EDEH------SEEEMSGSSQSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGV--EYL 563
Query: 340 VNRPDRR---DGKLNKSAHSGLVN------VLDDYSDDSVLEDEGSITLSGPRSTYMLPG 390
+ R D R DG + D + L+ +G TL+ + +P
Sbjct: 564 LARDDERSEVDGGSGPPTPGPTTTLGPKKEITDIAAAAESLQPKG-YTLATTQVKTPIPL 622
Query: 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALV 449
+ L +Q GL WL +++ + GIL D+MGLGKT+Q LA L + L+
Sbjct: 623 LLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLI 682
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG--VLLTTYDIVRNN 507
+ P +++ +W EL S KI Y+G K R+ + Q + V +T+Y +V +
Sbjct: 683 IVPTSVMLNWEMELKRWCPSFKILTYYGA-QKERKLKRQGWTKPNAFHVCITSYKLVLQD 741
Query: 508 SKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQ 567
++ R + W Y+ILDE IKN +QR +SLL S R++++GTP+Q
Sbjct: 742 HQAFRRKN------------WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQ 789
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627
N+L ELW+L +F P + ++ FKE + P L G ++ + + K L + ++
Sbjct: 790 NSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTG----MIEGSQEYNEGLVKRLHKVLR 844
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL----NSEIVLSAF 683
P+ LRR+K +V + + KK E ++ RL+ QR LY+ F+ E + +
Sbjct: 845 PFLLRRVKVDVEKQ--------MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGH 896
Query: 684 DGSPLAALTILKKICDHPLLLTKR 707
S + L L+K+C+HP L R
Sbjct: 897 FMSVINILMQLRKVCNHPNLFDPR 920
Score = 313 (115.2 bits), Expect = 6.5e-56, Sum P(3) = 6.5e-56
Identities = 75/209 (35%), Positives = 120/209 (57%)
Query: 747 QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
Q+D + K+ + LL +L EGH VLIF+Q +ML+++++ + G+ +LR+DG+T+
Sbjct: 2026 QYD-CAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVE 2084
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
R ++ F F+L+++ GG+G+ LT AD V+ D WNP+ D Q+ DR +RIG
Sbjct: 2085 QRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 2144
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQ- 924
Q +DV +YRL++ TVEE I +K K L A E YF QQ +REL +P +
Sbjct: 2145 QTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEE 2204
Query: 925 --GFDVSLTQQQLHEEHGDQ--HNMDESL 949
G VS ++ E + H ++++L
Sbjct: 2205 PPGSSVSSVPEEEEETVASKQTHILEQAL 2233
Score = 58 (25.5 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 216 ESVADEYEESKGDDVADEEQETE 238
ES +DE E+++ ADEEQE E
Sbjct: 528 ESESDESEDAQSQSQADEEQEDE 550
Score = 46 (21.3 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 216 ESVADEYEESKGDDVADE 233
+S ADE +E +GDD D+
Sbjct: 540 QSQADEEQEDEGDDDDDD 557
Score = 45 (20.9 bits), Expect = 6.5e-56, Sum P(3) = 6.5e-56
Identities = 20/92 (21%), Positives = 41/92 (44%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEK-----PQKVKIEGRRRLCKVSSR 58
DD++ ++VE + ND R+ + + + E+ P ++ + G + S
Sbjct: 300 DDEETIEVEEQQEGNDAETQRREIELLRHEGELPLEELLRSLPPQL-LGGPFSPSQTPSH 358
Query: 59 DVDNTEN-RAVVDDEPNFSDITDFDSPLQSKT 89
D D + +++EP+ D+ + D P S T
Sbjct: 359 DSDTPDGPEENIEEEPS-QDL-EVDPPSSSVT 388
Score = 42 (19.8 bits), Expect = 9.2e-21, Sum P(3) = 9.2e-21
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 219 ADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
A+E+ E + D+ ++EE + + +E + + E + D ++D G
Sbjct: 504 AEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGVEYL 563
Query: 279 VEGDEHLSRV 288
+ D+ S V
Sbjct: 564 LARDDERSEV 573
Score = 39 (18.8 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 24 SRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDE 72
S D E S +E++ + ++ G + + S + ++ ++++ D+E
Sbjct: 498 SSQSDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEE 546
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 584 (210.6 bits), Expect = 6.7e-56, P = 6.7e-56
Identities = 170/552 (30%), Positives = 279/552 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGG-----ILGDDMGLGKTMQICGFLAGLFHSRL--- 443
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 149 LSNILRPHQREGVRFMYDC-VEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECK 207
Query: 444 --IKRALVVAPKTLLSHWIKELTAV--GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLT 499
I +A++V+P +L+ +W KE T G + G+ T + Q+ + L T
Sbjct: 208 PTITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGT 267
Query: 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
++ + + + +E G +I DEGH +KN ++L+ + + R+
Sbjct: 268 PVLLISYETFRIYANILCQNEVG-------MVICDEGHRLKNSDNLTYQALMGLKTKRRV 320
Query: 560 IISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619
++SGTPIQN+L E ++L NF PE+LG FK +E PIL+G + + D+E+
Sbjct: 321 LLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKT 380
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679
+EL + +RR N++ + L K EM++ +RLTS Q + Y FL S+ V
Sbjct: 381 QELIGLVNQCIIRRT-NQIL-------TKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKV 432
Query: 680 LSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
+ + LA +T LKK+C HP L+ K A D G ++ N K
Sbjct: 433 RRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARD--KGFENSQNILPTNYKPK- 489
Query: 732 AMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 791
D + + F+L+ + + + VLI + T+ L+L ++
Sbjct: 490 -----------DLNPELSGKFMLLDFMLATI-RANSDDKVVLISNYTQT-LDLFEQLARK 536
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+ Y F+R+DGT R K+V+ F E D +F+L+S+ GG GL L A+R+ + DP
Sbjct: 537 RKYTFVRLDGTMTIKKRSKVVDRFNDPENDCF-LFMLSSKAGGCGLNLIGANRLFMFDPD 595
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-R 908
WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T ++ E +
Sbjct: 596 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEK 655
Query: 909 YFSQQDLRELLS 920
+F++ DL++L S
Sbjct: 656 HFTRDDLKDLFS 667
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 602 (217.0 bits), Expect = 6.9e-56, P = 6.9e-56
Identities = 185/578 (32%), Positives = 297/578 (51%)
Query: 396 LFPHQREGLRWLWS----LHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 444
L PHQ+EG+ +L+ + G+ G IL D+MGLGKT+Q + G + + ++
Sbjct: 296 LRPHQKEGITFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPIV 355
Query: 445 KRALVVAPKTLLSHWIKELTA-VGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDI 503
K+ L+V P +L+++W KE +G+ +I+ + T + + E VL+ +Y++
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGIE-RIKIF--TVDQDHKVEEFTKSPFYSVLIISYEM 412
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
+ + ++ F D +I DEGH +KN + + +L+ + RII++G
Sbjct: 413 LLRSLDQIKNVKF------------DLLICDEGHRLKNSTIKTTTALISLSCEKRIILTG 460
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QN+L+E + L +F P +LG +++ YE PI+ A + E+ +G A EL
Sbjct: 461 TPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAELT 520
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF 683
+ LRR + EV ++ L K E +V+ R + Q LY LNS+ V
Sbjct: 521 CLTGLFILRRTQ-EVINQ-------YLPPKIENVVFCRPGALQIALYRKLLNSQAVRFCL 572
Query: 684 DG-----SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI--A 736
G S L + LKK+C+HP LL E + + E+ L E L M++ A
Sbjct: 573 QGLLENTSHLICIGALKKLCNHPCLLFGSIKEK--ESNSTWDESEERNLYEGL-MNVFPA 629
Query: 737 DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
D F E+ +S +L+++ +L P VL+ + TR L+++QE GY +
Sbjct: 630 DY-NPIMFTEEESGKLQVLSKLLAVIRELRPAEKVVLVSNYTRT-LDILQEVCKRHGYAY 687
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTD 855
R+DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD
Sbjct: 688 TRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 747
Query: 856 NQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRY--FSQQ 913
Q++ R +R GQK V +YRL+T GT+EEKIY++QI K GL + + + FS +
Sbjct: 748 IQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSKTSDHIQFSVE 807
Query: 914 DLRELLSLPKQGFDVSLTQQQLHEE-HGDQHNMDESLE 950
+L+ L +L + V T L E G+ H D SLE
Sbjct: 808 ELKNLFTLHESSHCV--THDLLDCECTGENHTGD-SLE 842
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 350 (128.3 bits), Expect = 9.8e-56, Sum P(3) = 9.8e-56
Identities = 102/325 (31%), Positives = 168/325 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 523 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 582
Query: 458 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG--VLLTTYDIVRNNSKSLRGSS 515
+W +E T K+ Y+G ++ + Y QD V++T+Y +V + K +
Sbjct: 583 NWHQEFTRFVPKFKVLPYWGNPHDRKKKKTLYT-QDAPFHVVITSYQLVVQDVKYFQRVK 641
Query: 516 FISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWA 575
W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN + ELWA
Sbjct: 642 ------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWA 689
Query: 576 LFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLK 635
L +F P L ++ F E + I + HA + + I L ++P+ LRR+K
Sbjct: 690 LLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFMLRRIK 744
Query: 636 NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSPLAA-- 690
+V +E LS K E++++ +LTS Q+ LY+A N E +L + GS A
Sbjct: 745 KDVENE--------LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQN 796
Query: 691 -----LTIL---KKICDHPLLLTKR 707
+ ++ +K+C+HP L ++
Sbjct: 797 TTSSLMNLVMQFRKVCNHPELFERQ 821
Score = 317 (116.6 bits), Expect = 9.8e-56, Sum P(3) = 9.8e-56
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1106 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRND 1165
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1166 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1225
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1226 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1280
Score = 57 (25.1 bits), Expect = 9.8e-56, Sum P(3) = 9.8e-56
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 244 LKRNEPRWVDNNLVSARES-----FESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQ 298
LK++ +W+ + L+S S E N D EE+ SLS E L R+H+ KK HQ
Sbjct: 119 LKKSR-KWLKSILLSDESSEADSQSEDN-DDEEEELSLSREELHNML-RLHKYKKLHQN- 174
Query: 299 KKNEPKRVHDGERFN 313
K ++ K + + ++
Sbjct: 175 KYSKDKELQQYQYYS 189
Score = 47 (21.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 710 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 749
Score = 44 (20.5 bits), Expect = 2.2e-54, Sum P(3) = 2.2e-54
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE S E+ +HH Q K K HD
Sbjct: 234 DEEFSS-EESPRHHHHQTKVFAKFSHD 259
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 745 KDVENELSDKIEIL 758
Score = 37 (18.1 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 327 DEDDCVIVSGKLVVN---RPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSI 377
D+ C ++ L + RP R D L +++ N+ D S+D L+D +
Sbjct: 9 DDGSCTELAKPLYLQYLERPLRLDHFLRQTSAIFTRNISSDDSEDG-LDDNNPL 61
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 337 (123.7 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
Identities = 107/334 (32%), Positives = 171/334 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVVAPKTLLS 457
+Q +G+ WL +++ QG GIL D+MGLGKT+Q FL + H + LV++P + L
Sbjct: 538 YQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLH 597
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDKG----VLLTTYDIVRNNSKS 510
+W +E++ K+ Y+G+ + RQ+ Q L + V++T+Y +V
Sbjct: 598 NWQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVITSYQLV------ 651
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+SD + W YM+LDE IK+ ++QR K LL +R+++SGTPIQN++
Sbjct: 652 ------VSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSM 705
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPI-LRGNDKHALDREKRIGSAVAKELRERIQPY 629
ELWAL +F P L + F E + I +K +D EK+I L ++P+
Sbjct: 706 AELWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGID-EKQIS-----RLHMILKPF 759
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF---LNSEIVLSAFDGS 686
LRR+K +V +E LS K E++V+ LT Q+ LY A + E +L GS
Sbjct: 760 MLRRIKKDVENE--------LSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGS 811
Query: 687 PL-----AALTIL------KKICDHPLLLTKRAA 709
+A ++ +K+C+HP L +R A
Sbjct: 812 TTTSSSSSASNLMNLVMQFRKVCNHPELFERRDA 845
Score = 319 (117.4 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
Identities = 68/162 (41%), Positives = 106/162 (65%)
Query: 757 FIL-SLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDF 815
F+L +LL +L GH VLI+SQ KM++L++E + + ++++R+DG++K S R +V DF
Sbjct: 1159 FVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADF 1218
Query: 816 Q-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
Q D+ +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VY
Sbjct: 1219 QTRADIF-VFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVY 1277
Query: 875 RLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQI 907
RL+ GT+EE+I ++ + GG FK T +++
Sbjct: 1278 RLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLKPKEV 1319
Score = 58 (25.5 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 254 NNLVSARESFESNL--DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE- 310
N+L S RE L D E D +++E E + L R H + QRQ+KN K+ + +
Sbjct: 106 NDLTSDREWLYDLLLSDTESDDPTITEDEYVQQLLREHVRE---QRQRKNYYKKAANAQY 162
Query: 311 RFNGQSFVS 319
+ G +S
Sbjct: 163 AYYGSGLLS 171
Score = 58 (25.5 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 6 KKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTEN 65
+KP+ + E T+D V+ R+HD V D + V + ++ K SR + + E
Sbjct: 43 RKPLSSDEE--TDDEHVVKREHD------VQDSDDSSTVGVVRMKQSSKRKSRLLASKEE 94
Query: 66 RAVVDDEP-NFSDIT 79
R V + NF+D+T
Sbjct: 95 RQSVKAQLYNFNDLT 109
Score = 42 (19.8 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 592 KEKYELPILRGND-KHALDREKRIGSAVAKELRER 625
KE L ++ N+ K L KR+ AK +R+R
Sbjct: 320 KESGRLQRIKSNNHKEMLANCKRVAGMCAKVVRQR 354
Score = 42 (19.8 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E+++ IDE++ ++ + + + + +DV+N
Sbjct: 731 SKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVEN 770
Score = 37 (18.1 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 261 ESFESNLDGEEDGGSL 276
++ +N D +EDGG +
Sbjct: 245 DTLPNNEDDDEDGGEV 260
Score = 37 (18.1 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EI+
Sbjct: 766 KDVENELSDKIEIM 779
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 579 (208.9 bits), Expect = 2.4e-55, P = 2.4e-55
Identities = 170/553 (30%), Positives = 280/553 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGG-----ILGDDMGLGKTMQICGFLAGLFHSRL--- 443
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206
Query: 444 --IKRALVVAPKTLLSHWIKELTAV--GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLT 499
I + ++V+P +L+ +W KE T G + G+ T + Q+ + L T
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGT 266
Query: 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
++ + + E G +I DEGH +KN ++L+ + + R+
Sbjct: 267 PVLLISYETFRIYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGLKTKRRV 319
Query: 560 IISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619
++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D+E+
Sbjct: 320 LLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKT 379
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679
+EL + + +RR N++ + L K EM++ +LT Q QLY FL S+ V
Sbjct: 380 QELIKLVDQCIIRRT-NQIL-------TKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQV 431
Query: 680 LSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
+ + LA +T LKK+C HP L+ K AAE+ G ++ N
Sbjct: 432 RRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAEE--KGFENSQN---------- 479
Query: 732 AMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIG 790
I + + E + +S K + +L + G++ V++ S + L+L ++
Sbjct: 480 ---ILPI-NYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLAR 535
Query: 791 SKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848
+ Y F+R+DGT R K+V+ F E D +F+L+S+ GG GL L A+R+ + DP
Sbjct: 536 KRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLNLIGANRLFMFDP 594
Query: 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI- 907
WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T ++ E
Sbjct: 595 DWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAE 654
Query: 908 RYFSQQDLRELLS 920
++F++ DL++L S
Sbjct: 655 KHFTRDDLKDLFS 667
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 344 (126.2 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 105/330 (31%), Positives = 167/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 530 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 589
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E T K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 590 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 649
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 650 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 697
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 698 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 752
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++++ +LTS Q+ LY+A N E +L + GS
Sbjct: 753 LRRIKKDVENE--------LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 804
Query: 688 LAALTI----------LKKICDHPLLLTKR 707
A T +K+C+HP L ++
Sbjct: 805 QQAQTTTSSLMNLVMQFRKVCNHPELFERQ 834
Score = 317 (116.6 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1119 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRND 1178
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1179 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1238
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1239 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1293
Score = 56 (24.8 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 244 LKRNEPRWVDNNLVSARES-----FESNLDGEEDGGS----LSEVEGDEH-LSRVHETKK 293
LK++ +W+ + L+S S E N +GEE+ LS D H + R+H+ KK
Sbjct: 119 LKKSR-KWLKSILLSDESSEADSHSEDNDEGEEEDDDEEEELSLSREDLHNMLRLHKYKK 177
Query: 294 HHQRQKKNE 302
HQ + E
Sbjct: 178 LHQNKYSKE 186
Score = 47 (21.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 723 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 762
Score = 42 (19.8 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE LS ++HH Q K K HD
Sbjct: 241 DEELSSEESPRRHHH-QTKVFAKFSHD 266
Score = 40 (19.1 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 217 SVADEYEESKGDDVADEEQETENVGIGLKRNE 248
S AD + E +D +EE + E + L R +
Sbjct: 136 SEADSHSED--NDEGEEEDDDEEEELSLSRED 165
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 758 KDVENELSDKIEIL 771
Score = 37 (18.1 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 611 PHDRKVIRRFWS 622
Score = 37 (18.1 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 482 TRQYELQ-YVLQDKGVLLTTYDIVRNNSKSLRG 513
+++ ELQ Y G LL+TYD + L G
Sbjct: 184 SKEKELQQYQYYSAG-LLSTYDPFYEQQRHLLG 215
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 364 (133.2 bits), Expect = 6.2e-55, Sum P(2) = 6.2e-55
Identities = 138/510 (27%), Positives = 229/510 (44%)
Query: 215 VESVADEYEESKGDDVA----DEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGE 270
VE + +Y + D + +E E + +E A E+ + +
Sbjct: 445 VEELLQQYAGAYASDASAPGSGSSEEEEEDEVEADSSESE--PEGAAEAEEAPHEDSSSQ 502
Query: 271 EDGGS-LSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
D SE E DEH S ET R ++E + E QS EE +D+D
Sbjct: 503 SDSAEEQSEDEEDEH-SEEEETS----RSSESEESESEESEESQSQSQAD---EEEEDDD 554
Query: 330 DCV--IVSGKLVVNRPDRRDGKLNKSAHSGL---VNVLDDYSDDSVLEDEGSITLSGPRS 384
V +++ + D G + L + D + L+ +G TL+ +
Sbjct: 555 FGVEYLLARDEERSEADGGSGPPTPGPTTTLGPKKEITDIAAAAESLQPKG-YTLATTQV 613
Query: 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-L 443
+P + L +Q GL WL +++ + GIL D+MGLGKT+Q LA L +
Sbjct: 614 KTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 673
Query: 444 IKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG--VLLTTY 501
L++ P +++ +W EL S KI Y+G K R+ + Q + V +T+Y
Sbjct: 674 WGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGA-QKERKLKRQGWTKPNAFHVCITSY 732
Query: 502 DIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
+V + ++ R + W Y+ILDE IKN +QR +SLL S R+++
Sbjct: 733 KLVLQDHQAFRRKN------------WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 780
Query: 562 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
+GTP+QN+L ELW+L +F P + ++ FKE + P L G ++ + + K
Sbjct: 781 TGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTG----MIEGSQEYNEGLVKR 835
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL----NSE 677
L + ++P+ LRR+K +V + + KK E ++ RL+ QR LY+ F+ E
Sbjct: 836 LHKVLRPFLLRRVKVDVEKQ--------MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKE 887
Query: 678 IVLSAFDGSPLAALTILKKICDHPLLLTKR 707
+ + S + L L+K+C+HP L R
Sbjct: 888 TLATGHFMSVINILMQLRKVCNHPNLFDPR 917
Score = 308 (113.5 bits), Expect = 6.2e-55, Sum P(2) = 6.2e-55
Identities = 67/170 (39%), Positives = 102/170 (60%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL +L EGH VLIF+Q +ML+++++ + G+ +LR+DG+T+ R ++
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F F+L+++ GG+G+ LT AD V+ D WNP+ D Q+ DR +RIGQ +DV +
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2163
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLP 922
YRL++ TVEE I +K K L A E YF QQ +REL +P
Sbjct: 2164 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMP 2213
Score = 50 (22.7 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 710 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 750
ED ++ S PE AA AE+ A H ++ D +EQ ++
Sbjct: 473 EDEVEADSSESEPEGAAEAEE-APHEDSSSQSDSAEEQSED 512
Score = 50 (22.7 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 33/122 (27%), Positives = 49/122 (40%)
Query: 216 ESVADEYE-ESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNL-----DG 269
E A+E E E + D +A EEQ V ++ NE L S E + D
Sbjct: 402 EFTANEDEAEDEEDTIAAEEQLEGEVDPAVELNELAREGGEL-SVEELLQQYAGAYASDA 460
Query: 270 EEDG-GSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
G GS E E DE + E++ + + P H+ + QS E+ +DE
Sbjct: 461 SAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAP---HEDS--SSQS--DSAEEQSEDE 513
Query: 329 DD 330
+D
Sbjct: 514 ED 515
Score = 41 (19.5 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 542 PSTQRAKSLLEIPSAHRIIISGTPI 566
P + A SLL PS + +S P+
Sbjct: 1769 PVSSSAASLLAPPSVQTLTLSPAPV 1793
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 398 (145.2 bits), Expect = 7.3e-55, Sum P(4) = 7.3e-55
Identities = 146/514 (28%), Positives = 235/514 (45%)
Query: 226 KGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEE--DGGSLSEVEGDE 283
K D D E E+V L E + D+ A E + D E+ + +L + E +
Sbjct: 359 KEDHTYDFNDEQEDVDFVLANGEEK--DDEATLAVEEELAKADNEDHVEEIALLQKESEM 416
Query: 284 HLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSG--GREEYDDEDDCVIVSGKLVVN 341
+ + K K + S V R++ D +DD V ++ +
Sbjct: 417 PIEVLLARYKEDFGGKDISEDESESSFAVSEDSIVDSDENRQQADLDDDNVDLTECKLDP 476
Query: 342 RP--DRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGS---ITLSGPRSTYMLPGKIGNML 396
P + +G ++ A + D +D + T S + LP + + L
Sbjct: 477 EPCSENVEGTFHEVAEDNDKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSL 536
Query: 397 FPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTL 455
+Q GL WL +++ + GIL D+MGLGKT+ LA L + I L+V P ++
Sbjct: 537 REYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSV 596
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQYELQ--YVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W E + KI YFG+ K R+ + Q L V +TTY +V +SK +
Sbjct: 597 MLNWETEFLKWCPAFKILTYFGSA-KERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKR 655
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
W Y+ILDE HLIKN +QR ++LL S RI+++GTP+QN+L EL
Sbjct: 656 KK------------WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMEL 703
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
W+L +F P + ++ FK+ + PI G ++ +++I V L ++P+ LRR
Sbjct: 704 WSLMHFLMPHVFQSHQEFKDWFCNPIA-G----MVEGQEKINKEVIDRLHNVLRPFLLRR 758
Query: 634 LKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS-EIVLSAFDGSPLAALT 692
LK +V + L K+E +++ RL+ QR LYE F+ S E + GS ++
Sbjct: 759 LKRDVEKQ--------LPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMIS 810
Query: 693 I---LKKICDHPLLLTKRAAEDVLD--GMDSMLN 721
I L+K+C+HP L R D G+D L+
Sbjct: 811 IIMQLRKVCNHPDLFEGRPIVSSFDMAGIDVQLS 844
Score = 295 (108.9 bits), Expect = 7.3e-55, Sum P(4) = 7.3e-55
Identities = 76/224 (33%), Positives = 118/224 (52%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISC-KISF 757
D P+ L+ E V D + +L+P A+ + V D Q D C K+
Sbjct: 1029 DSPVFLSPSYKEKVTDLLSPLLSPIRPAIVRR------QVYFPDRRLIQFD---CGKLQE 1079
Query: 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE 817
+ LL KL GH LIF+Q KML++++ I GY ++R+DG+T +R ++ F
Sbjct: 1080 LAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNT 1139
Query: 818 GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLM 877
+F+L+++ GG+G+ L AD VI D WNP+ D Q+ DR +RIGQ ++V +YRL+
Sbjct: 1140 NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLI 1199
Query: 878 TCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 920
+ T+EE I +K K L ++ E +F + D EL S
Sbjct: 1200 SESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFS 1243
Score = 53 (23.7 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 255 NLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNE 302
N + ES LD + D S E E DE + E +KH ++++ E
Sbjct: 197 NSSAGLESGSPELDEDYDLKSEDETEDDE--DTIEEDEKHFTKRERQE 242
Score = 50 (22.7 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 28/134 (20%), Positives = 55/134 (41%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNT 63
DD+ + VE E+ D + DHVE +++ +E +++ R +D+
Sbjct: 384 DDEATLAVEEELAKAD------NEDHVEEIALLQKESEMPIEVLLARYKEDFGGKDISED 437
Query: 64 ENRA--------VVDDEPNF--SDITDFDSPLQSKTVS---AMVNIES--RAVIDDGPKF 108
E+ + +VD + N +D+ D + L + N+E V +D K
Sbjct: 438 ESESSFAVSEDSIVDSDENRQQADLDDDNVDLTECKLDPEPCSENVEGTFHEVAEDNDKD 497
Query: 109 SDITVFDSPPKAKT 122
S + D+ A++
Sbjct: 498 SSDKIADAAAAARS 511
Score = 46 (21.3 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 209 DNVGGVVESVADEYEESKGDDVAD 232
+NV G VA++ ++ D +AD
Sbjct: 481 ENVEGTFHEVAEDNDKDSSDKIAD 504
Score = 40 (19.1 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 1028 SPKNEAKLKESDIKERIKR 1046
SPKN L+ ++I E I++
Sbjct: 909 SPKNRKNLQGTNIFEEIRK 927
Score = 37 (18.1 bits), Expect = 7.3e-55, Sum P(4) = 7.3e-55
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQE 236
KD + SV ++ E K + A EE E
Sbjct: 293 KDENQDNLASVGQDHGEDKNNLAASEETE 321
Score = 37 (18.1 bits), Expect = 7.3e-55, Sum P(4) = 7.3e-55
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLI 1051
K +KK + K++ L SDIK K+ S L+
Sbjct: 1582 KTSKKKAK-KHKKSLPNSDIK--YKQTSALL 1609
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 340 (124.7 bits), Expect = 7.6e-55, Sum P(3) = 7.6e-55
Identities = 104/330 (31%), Positives = 169/330 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 521 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 580
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E T K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 581 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 640
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 641 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 688
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 689 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 743
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++++ +LTS Q+ LY+A N E +L + GS
Sbjct: 744 LRRIKKDVENE--------LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 795
Query: 688 LAA-------LTIL---KKICDHPLLLTKR 707
A + ++ +K+C+HP L ++
Sbjct: 796 QQAQNTTSSLMNLVMQFRKVCNHPELFERQ 825
Score = 318 (117.0 bits), Expect = 7.6e-55, Sum P(3) = 7.6e-55
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1109 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRND 1168
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1169 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1228
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1229 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1283
Score = 58 (25.5 bits), Expect = 7.6e-55, Sum P(3) = 7.6e-55
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDE-H-LSRVHETKKHHQRQKKN 301
LK++ +W+ + L+S ES E++ E+D + +E H + R+H+ KK HQ K +
Sbjct: 119 LKKSR-KWLKSILLSD-ESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQN-KYS 175
Query: 302 EPKRVHDGERFNGQSFVSGGREEYD 326
+ K + +++ Q + +G YD
Sbjct: 176 KDKEL---QQY--QYYSAGLLSTYD 195
Score = 47 (21.6 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 714 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 753
Score = 42 (19.8 bits), Expect = 3.6e-53, Sum P(3) = 3.6e-53
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE LS ++HH Q K K HD
Sbjct: 232 DEELSSEESPRRHHH-QTKVFAKFSHD 257
Score = 39 (18.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 749 KDVENELSDKIEIL 762
Score = 37 (18.1 bits), Expect = 3.0e-23, Sum P(3) = 3.0e-23
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 602 PHDRKVIRRFWS 613
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 361 (132.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 116/359 (32%), Positives = 178/359 (49%)
Query: 359 VNVLD-DYSDDS--VLEDEGSITL---SGPRSTYMLPGKI-GNMLFPHQREGLRWLWSLH 411
+ ++D D +DDS +LE E L S P + G L +Q EGL+W+ SL+
Sbjct: 342 IEIIDSDNNDDSNDLLEGERQFNLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLY 401
Query: 412 CQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKE--LTAVGL 468
GIL D+MGLGKT+Q +A L S+ L L++APK +L +W E L A +
Sbjct: 402 NNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSI 461
Query: 469 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW 528
SA + Y G+ K + + VL+T YD++ +R +F+ D W
Sbjct: 462 SAFL--YDGSKEKRTEIRARIAGGKFNVLITHYDLI------MRDKAFLKKI--D----W 507
Query: 529 DYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
+YMI+DEGH +KN AK+L R++++GTPIQN+L+ELW+L NF P +
Sbjct: 508 NYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNS 567
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
F+E + P D E+ + + L I+P+ LRR K+EV E +
Sbjct: 568 IHNFEEWFNTPFAECGSASLTDEEELL---IINRLHHVIRPFLLRRKKSEV--EKFLPGK 622
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTI-LKKICDHPLL 703
+ K +M W +L +Q+ + + L + +G L LT+ L+K C+HP L
Sbjct: 623 TQVILKCDMSAWQKLY--YKQVTDV---GRVGLHSGNGKSKSLQNLTMQLRKCCNHPYL 676
Score = 296 (109.3 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 65/165 (39%), Positives = 102/165 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+L+P+ GH +L+FSQ ++++L++ + Y +LR+DG+TK R ++ F
Sbjct: 699 LLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFN 758
Query: 817 EGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
E D +P +FLL+++ GGLGL L AD +I+ D WNP D Q+ DRA+RIGQKK+V V+
Sbjct: 759 EPD-SPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVF 817
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 919
L++ G++EE I + K G+ + + QD RE+L
Sbjct: 818 VLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREML 862
Score = 41 (19.5 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 306 VHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRP 343
+H+ E + F G DE++ +I++ V RP
Sbjct: 568 IHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRP 605
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 327 (120.2 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 103/330 (31%), Positives = 162/330 (49%)
Query: 363 DDYSD-DSVLEDEGSITLSGPRS----TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGG 417
DD+++ E+E + P S T P + L +Q +GL WL +L+ QG G
Sbjct: 668 DDHANAHEEEEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGING 727
Query: 418 ILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYF 476
IL D+MGLGKT+Q LA L + I LVV P + L +W+ E++ KI Y+
Sbjct: 728 ILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYW 787
Query: 477 GTC----VKTRQYELQYVLQDKG----VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW 528
G V + ++ + + +K V++T+Y +V ++ L+ W
Sbjct: 788 GNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMK------------W 835
Query: 529 DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN 588
YMILDE IK+ + R K+LL +R++++GTPIQN+++ELWAL +F P L +
Sbjct: 836 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH 895
Query: 589 KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSA 648
F E + I + HA + ++ + L ++P+ LRR+K V E
Sbjct: 896 DEFNEWFSKDI----ESHA-EANTKLNQQQLRRLHMILKPFMLRRVKKNVQSE------- 943
Query: 649 TLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
L K E+ V LT Q +LY+ L S+I
Sbjct: 944 -LGDKIEIDVLCDLTQRQAKLYQV-LKSQI 971
Score = 319 (117.4 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 71/187 (37%), Positives = 115/187 (61%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL KL EGH VLI+ Q KM++L++E + + Y +R+DG++K DR +
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1357
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V+D+Q +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V
Sbjct: 1358 VHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1417
Query: 872 VVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS-LPKQGFDVSL 930
VYRL+ GT+EE++ + K + + E K Q + ++ E S + ++G S+
Sbjct: 1418 TVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEVGENDSEVTREG-SKSI 1476
Query: 931 TQQQLHE 937
+Q + E
Sbjct: 1477 SQDGIKE 1483
Score = 68 (29.0 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 28/132 (21%), Positives = 51/132 (38%)
Query: 210 NVGGVV-ESVADEYEESKGDDVAD--EEQETENVGIGLKRNEPRWVDNNLVSARESFESN 266
N+ ++ E ADE EE D++ D E+ E + G N N + +R+ +
Sbjct: 131 NLSDIINEKDADEDEEDDEDELEDGEEDMEEDEASTGRHTNGKSMRGNGIQKSRKKDAAA 190
Query: 267 L--------DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFV 318
D + ++ V GDE+ + + + +N +D E N
Sbjct: 191 AAAIGKAIKDDQTHADTVVTVNGDENEDGNNGEDEDNDNDNENNNDNDNDNENENDNDSD 250
Query: 319 SGGREEYDDEDD 330
+ EE +ED+
Sbjct: 251 NDDEEENGEEDE 262
Score = 50 (22.7 bits), Expect = 8.9e-53, Sum P(3) = 8.9e-53
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 266 NLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGR-EE 324
N D EDG + + + D ++ ++ + N+ +D E NG+ E+
Sbjct: 212 NGDENEDGNNGEDEDNDNDNENNNDNDNDNENENDNDSD--NDDEEENGEEDEEEEEIED 269
Query: 325 YDDED 329
D+ED
Sbjct: 270 LDEED 274
Score = 49 (22.3 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 446 RALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT-RQYELQYVLQDKGVLLTTYDIV 504
R L + K + +K+ L KI E C T RQ +L VL K + T YD +
Sbjct: 922 RRLHMILKPFMLRRVKKNVQSELGDKI-EIDVLCDLTQRQAKLYQVL--KSQISTNYDAI 978
Query: 505 RNNSKSLRGSSFISDEAGDDDAI 527
N + + S+ S+ D + I
Sbjct: 979 ENAATNDSTSNSASNSGSDQNLI 1001
Score = 44 (20.5 bits), Expect = 3.5e-25, Sum P(3) = 3.5e-25
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 588 NKWFK-EKYELPILRGNDKHALDR-----EKRIGSAVAKEL-----RERIQPYFL-RRLK 635
N W K E+ E + + +K A+++ E++ AK+L + + +F+ R++K
Sbjct: 541 NFWKKNEREERDLKKKIEKEAMEQAKKEEEEKESKRQAKKLNFLLTQTELYSHFIGRKIK 600
Query: 636 NEVFHEDDVTSSATLSKKN 654
++V+S+ + S+KN
Sbjct: 601 TNELEGNNVSSNDSESQKN 619
Score = 43 (20.2 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 14/71 (19%), Positives = 35/71 (49%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679
++L+++I+ + + K E E++ S K N ++ Q +LY F+ +I
Sbjct: 551 RDLKKKIEKEAMEQAKKE---EEEKESKRQAKKLNFLLT-------QTELYSHFIGRKIK 600
Query: 680 LSAFDGSPLAA 690
+ +G+ +++
Sbjct: 601 TNELEGNNVSS 611
Score = 41 (19.5 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 723 EDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILS 760
E+ L +K+ + A+K++ +++ + K++F+L+
Sbjct: 549 EERDLKKKIEKEAMEQAKKEEEEKESKRQAKKLNFLLT 586
Score = 40 (19.1 bits), Expect = 9.8e-52, Sum P(3) = 9.8e-52
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 29 HVES-RSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTEN 65
HV+ + +I++ K ++ + E + + D+DN E+
Sbjct: 381 HVKRLKKLINDAKREREREEALKNNVGLDGNDLDNDED 418
Score = 39 (18.8 bits), Expect = 1.3e-51, Sum P(3) = 1.3e-51
Identities = 17/83 (20%), Positives = 32/83 (38%)
Query: 37 DEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNI 96
D+E+ + E + + D E + DDE D+ S + S +++
Sbjct: 252 DDEEENGEEDEEEEEIEDLDEEDFAAFEEQDDNDDEDFNPDVEKRRKRSSSSSSSTKLSM 311
Query: 97 ESRAVIDDGPKFSDITVFDSPPK 119
S ++I +IT+ PK
Sbjct: 312 NSLSLITSKKINKNITINSDRPK 334
Score = 37 (18.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 718 SMLNPEDAALAEKLAMHIADVA-EKDDFQEQHDN 750
SM+N E A +++D+ EKD +++ D+
Sbjct: 115 SMINKEWAEYQSFKNANLSDIINEKDADEDEEDD 148
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 343 (125.8 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 108/372 (29%), Positives = 186/372 (50%)
Query: 338 LVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDS-VLEDEGSITLSGPRSTYM-LPGKIGNM 395
L V ++ +GK K H + ++ +D+ +L++E S + P +
Sbjct: 137 LDVLEENKANGK-GKGKHQDVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYVNGQ 195
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKT 454
L P+Q +G+ WL SLH GIL D+MGLGKT+Q FL L + I LV+APK+
Sbjct: 196 LRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKS 255
Query: 455 LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGS 514
L++W++E+ + + + K + EL +Q K +L +D+V + + +
Sbjct: 256 TLNNWLREINR--WTPDVNAFILQGDKEERAEL---IQKK-LLGCDFDVVIASYEII--- 306
Query: 515 SFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELW 574
I +++ W+Y+I+DE H IKN + ++ L E S +R++I+GTP+QNNL ELW
Sbjct: 307 --IREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELW 364
Query: 575 ALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRL 634
AL NF P++ D + F + + ++ D++K + K+L +QP+ LRR+
Sbjct: 365 ALLNFLLPDIFSDAQDFDDWFS------SESTEEDQDK-----IVKQLHTVLQPFLLRRI 413
Query: 635 KNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI- 693
K++V E + L+ M + +++ E L++ + S L I
Sbjct: 414 KSDV--ETSLLPKKELNLYVGMSSMQK--KWYKKILEKDLDAVNGSNGSKESKTRLLNIM 469
Query: 694 --LKKICDHPLL 703
L+K C+HP L
Sbjct: 470 MQLRKCCNHPYL 481
Score = 315 (115.9 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 62/139 (44%), Positives = 94/139 (67%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
+ K+ + LL KL EG VLIFSQ ++L+++++ + Y++ RIDG+T DR++
Sbjct: 501 AAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQA 560
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++D+ D +FLLT++ GGLG+ LT AD V++ D WNP D Q++DRA+RIGQKK
Sbjct: 561 IDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQ 620
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V V+RL+T +VEEKI +
Sbjct: 621 VKVFRLVTDNSVEEKILER 639
Score = 38 (18.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 33 RSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSD 77
R V+D + K +G+ + V R ++ E+ ++ +E + D
Sbjct: 134 RQVLDVLEENKANGKGKGKHQDVRRRKTEHEEDAELLKEEDSDDD 178
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 341 (125.1 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 78/224 (34%), Positives = 125/224 (55%)
Query: 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---FQEQ 747
L IL+K+ +H LL + DG + E++ D E+ F+
Sbjct: 382 LAILRKVANHVALLQSK------DGTSKKQEKYVTTICEQVFRKFPDFTERCKQAAFEAM 435
Query: 748 HDNI-SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
D + S K+ + LL+ I + VL+FS + K+L++++ ++G ++ R+DG TK+
Sbjct: 436 SDPMYSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMAEGLEYHRLDGNTKSK 495
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
DRVKIV +F + L+++ GGLGL A+ V++ DP WNP+ D Q++DR YRIG
Sbjct: 496 DRVKIVKEFNSSRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDLQAIDRVYRIG 555
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
Q +DV V+RL++ GTVEE IY +Q++K L + + RYF
Sbjct: 556 QCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENARRYF 599
Score = 317 (116.6 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 109/371 (29%), Positives = 178/371 (47%)
Query: 362 LDDYSDDSVLEDEGSITLSGPRSTYMLPGK-------IGNMLFPHQREGLRWLWSLHCQG 414
L + D+ L T GP ++L G I L +QREG+++++ + +
Sbjct: 20 LPHFEDEKPLFHSNQ-TPPGPSEAFLLAGSDVKVPYTINRYLRDYQREGIKFIYQNYAKS 78
Query: 415 KGGILGDDMGLGKTMQICGFLAGLFHS----------------------RLIKRALVVAP 452
+G ILGDDMGLGKT+Q+ GFLA + R+ K ++VAP
Sbjct: 79 RGCILGDDMGLGKTVQVIGFLAAVLQKTGTWKDVENNRPQFLLSQKPSERVQKVFVIVAP 138
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSL 511
++L +W EL G ++ G + EL V + + + LTTY+ +R L
Sbjct: 139 LSVLYNWKDELDTWG-HFRVVVVHGV---RKDEELARVQRGRCEIALTTYETLR-----L 189
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
F S W +I+DE H IKN ++ +++ ++ RI ++GT +QNNL+
Sbjct: 190 CLDQFNSIN-------WAAVIVDEAHKIKNHKSKITQAVKQMRCKVRIGLTGTILQNNLE 242
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRI-GSAVAKELRERIQPYF 630
ELW + N+ P LG FK ++ PI +G KH + + G +EL +++ +F
Sbjct: 243 ELWCVMNWAVPRCLGSLGAFKNRFSDPIEKGQ-KHTVTKRALAEGRKAVQELAKKLSRWF 301
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE---IVLSAFDGSP 687
LRR K+ + S L KK++ +V+ LT QR +Y A L+S+ ++L + P
Sbjct: 302 LRRTKSLI--------SDQLPKKDDRVVYCSLTDFQRTVYRAVLDSDDVTLMLQSSGKCP 353
Query: 688 LAALTILKKIC 698
++ KK C
Sbjct: 354 CSSGRPRKKCC 364
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 394 (143.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 153/609 (25%), Positives = 269/609 (44%)
Query: 228 DDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSR 287
D +D + E G G P W+ ++ V + E + LD E+D S +E + + +
Sbjct: 48 DSDSDLDSEDNKHGKGDNDTAPIWLQDD-VHSDEDIQ--LDSEDD--SDTEAVQAQVVDK 102
Query: 288 VHETKKHHQRQKKNEPKRVHDG------ERFNGQSFVSGGREEYDDEDDCVIVSGKLVVN 341
+ + K Q+ +E + ++ N FV + D ++ V N
Sbjct: 103 LAKDTKSEQKSLDDELSEMDTKTVSLKLKKLN--EFVRQSQVYSSIIADTLLHRSNEVAN 160
Query: 342 RPDRRDGKLNKSAHSGLV------NVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGN- 394
+ + + HS ++ D + ED + + + P + N
Sbjct: 161 ANTKDNSNSDDEEHSSKKRKTKKKSITDFFKKQKKNEDTTTQNGAPDDAAIKQPRLLKNC 220
Query: 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454
+L P+Q EGL WL +L+ G GIL D+MGLGKT+Q LA ++ LV AP +
Sbjct: 221 ILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLS 280
Query: 455 LLSHWIKELTAVGLSAKIREYFGTC-VKTRQYELQYVLQDKG---VLLTTYDIVRNNSKS 510
L +W+ E + +Y+GT K R +L+ + G +++T+Y+I+
Sbjct: 281 TLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEII------ 334
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
LR + I + W ++I+DEGH +KN + + K L +I +++R++++GTP+QNNL
Sbjct: 335 LRDTDLIMSQN------WKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNL 388
Query: 571 KELWALFNFCCPELLGD----NKWFKEKYELPILRGNDKHALDR--EKRIGSAVAKELRE 624
ELW+L NF P++ D NKWF + L + G++ AL++ + + L
Sbjct: 389 AELWSLLNFIMPDIFADFEIFNKWF-DFDSLNLGSGSNSEALNKLINDELQKNLISNLHT 447
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 684
++P+ LRRLK V + L K E I+ +TS Q + Y+A LN ++ + F
Sbjct: 448 ILKPFLLRRLKKVVL-------ANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFK 500
Query: 685 GSPLAALTILKKICDHPLLLTKRAAEDVLD---------GMDSMLNPE----DAALAEKL 731
T+ + H ++ R+ D ++ D+ +NP D + L
Sbjct: 501 ELIKDFFTLNDEYIGH---VSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNL 557
Query: 732 AMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG- 790
M I++ ++ + I F L PE + +T L ++Q+ I
Sbjct: 558 QMEISNKKLQNMMMQLRQIIDSTFLFYFPYLH---PEDLTLETLLKTSGKLQILQKLIPP 614
Query: 791 --SKGYKFL 797
S+G+K L
Sbjct: 615 LISEGHKVL 623
Score = 255 (94.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 67/198 (33%), Positives = 98/198 (49%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + L+ LI EGH VLI+SQ ML+LI++ + RIDG+ R
Sbjct: 602 SGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQ 661
Query: 812 VNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
+ F D IFLL+++ GLG+ L AD V++ D WNP D Q++DR +RIGQ+
Sbjct: 662 LEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESP 721
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSL 930
V+VYRL T+E I + K L + + + + L E L V++
Sbjct: 722 VIVYRLCCDNTIEHVILTRAANKRNLERMVIQ-MGKFNNLKKLALNEGSFLKANKAGVNV 780
Query: 931 TQQQLHEEHGDQHNMDES 948
T + L +E DES
Sbjct: 781 TNKDLVQELSMLLMSDES 798
Score = 76 (31.8 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 50/210 (23%), Positives = 83/210 (39%)
Query: 111 ITVFDSPPKAKTVSENDNYKGGNEIRDI-LNDLSARLEILSIDKRRVPKTVDPEDDFSRL 169
+TV + A+ + N G R+ +NDL+A +I D +D ED+
Sbjct: 10 MTVVEDAVGARVAARTRNMSNGVNYREKEVNDLTA--DISDSDS-----DLDSEDN---- 58
Query: 170 VKNGDTGQGSKGNLPEYXXXXXXXXXXXXXXXXXXGVTKDNVGGVVESVA-DEYEESKGD 228
K+G +G P + T+ VV+ +A D E K
Sbjct: 59 -KHG---KGDNDTAPIWLQDDVHSDEDIQLDSEDDSDTEAVQAQVVDKLAKDTKSEQKSL 114
Query: 229 DVADEEQETENVGIGLKR-NE---PRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEH 284
D E +T+ V + LK+ NE V +++++ SN + S + +EH
Sbjct: 115 DDELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLLHRSNEVANANTKDNSNSDDEEH 174
Query: 285 LSRVHETKKHH-----QRQKKNEPKRVHDG 309
S+ +TKK ++QKKNE +G
Sbjct: 175 SSKKRKTKKKSITDFFKKQKKNEDTTTQNG 204
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 375 (137.1 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 134/487 (27%), Positives = 222/487 (45%)
Query: 231 ADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHE 290
+ EE++ + V EP + +E S D E+ SE E +EH S E
Sbjct: 467 SSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQ---SEDEDEEH-SEEEE 522
Query: 291 TKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKL 350
T + ++E + E QS EE DD +++ + D G
Sbjct: 523 TSE----SSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPP 578
Query: 351 NKSAHSGL---VNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWL 407
+ L + D + L+ +G TL+ + +P + L +Q GL WL
Sbjct: 579 TPGPTTTLGPKKEITDIAAAAESLQPKG-YTLATTQVKTPIPLLLRGQLREYQHIGLDWL 637
Query: 408 WSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKELTAV 466
+++ + GIL D+MGLGKT+Q LA L + L++ P +++ +W EL
Sbjct: 638 VTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRW 697
Query: 467 GLSAKIREYFGTCVKTRQYELQYVLQDKG--VLLTTYDIVRNNSKSLRGSSFISDEAGDD 524
S KI Y+G K R+ + Q + V +T+Y +V + ++ R +
Sbjct: 698 CPSFKILTYYGA-QKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKN--------- 747
Query: 525 DAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPEL 584
W Y+ILDE IKN +QR +SLL S R++++GTP+QN+L ELW+L +F P +
Sbjct: 748 ---WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHV 804
Query: 585 LGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDV 644
++ FKE + P L G ++ + + K L + ++P+ LRR+K +V +
Sbjct: 805 FQSHREFKEWFSNP-LTG----MIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ--- 856
Query: 645 TSSATLSKKNEMIVWLRLTSCQRQLYEAFL----NSEIVLSAFDGSPLAALTILKKICDH 700
+ KK E ++ RL+ QR LY+ F+ E + + S + L L+K+C+H
Sbjct: 857 -----MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNH 911
Query: 701 PLLLTKR 707
P L R
Sbjct: 912 PNLFDPR 918
Score = 308 (113.5 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 67/170 (39%), Positives = 102/170 (60%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL +L EGH VLIF+Q +ML+++++ + G+ +LR+DG+T+ R ++
Sbjct: 2055 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2114
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F F+L+++ GG+G+ LT AD V+ D WNP+ D Q+ DR +RIGQ +DV +
Sbjct: 2115 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2174
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLP 922
YRL++ TVEE I +K K L A E YF QQ +REL +P
Sbjct: 2175 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMP 2224
Score = 145 (56.1 bits), Expect = 3.3e-30, Sum P(3) = 3.3e-30
Identities = 128/588 (21%), Positives = 240/588 (40%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGD 282
EE D+V + E G P+ D++ S +S E + E++ S E +
Sbjct: 469 EEEDEDEVEANSSDCEPEGATEAEEAPQ-EDSS--SQSDSAEEQSEDEDEEHSEEEETSE 525
Query: 283 EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNR 342
S E+++ + Q +++ + + G ++ EE + D SG
Sbjct: 526 SSESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGG---SGPPTPG- 581
Query: 343 PDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQRE 402
P G + + D + L+ +G TL+ + +P + L +Q
Sbjct: 582 PTTTLGPKKE--------ITDIAAAAESLQPKG-YTLATTQVKTPIPLLLRGQLREYQHI 632
Query: 403 GLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIK 461
GL WL +++ + GIL D+MGLGKT+Q LA L + L++ P +++ +W
Sbjct: 633 GLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEM 692
Query: 462 ELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG--VLLTTYDIVRNNSKSLRGSSF--- 516
EL S KI Y+G K R+ + Q + V +T+Y +V + ++ R ++
Sbjct: 693 ELKRWCPSFKILTYYGA-QKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYL 751
Query: 517 ISDEAGD----DDAIWDYMI-LDEGHLIKNPSTQRAKSLLEIPSA-HRIIISGTPIQNNL 570
I DEA + W ++ + + T SL+E+ S H ++
Sbjct: 752 ILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREF 811
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDRE---KRIGSAVAKELRERIQ 627
KE W F P L G + +E E + R H + R +R+ V K++ ++ +
Sbjct: 812 KE-W----FSNP-LTGMIEGSQEYNEGLVKR---LHKVLRPFLLRRVKVDVEKQMPKKYE 862
Query: 628 PYFLRRL--KNEVFHED---DVTSSATLSKKNEMIVWLRLTSCQRQL-YEAFLNSEIVLS 681
RL + ++D T+ TL+ + M V L ++ + + V S
Sbjct: 863 HVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTS 922
Query: 682 AF--DGSPLAALTILKKICD-HPLLLTKRAAEDVLDGMDSMLN--PEDAALAE-KLAMHI 735
F G + +++ + D HPL D++ G++ ++ D L + +L+ +
Sbjct: 923 PFITPGICFSTASLVLRATDVHPLQRIDMGRFDLI-GLEGRVSRYEADTFLPQYRLSRRV 981
Query: 736 A-DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 782
+VA D + + K++ +L + K EG V++ + R L
Sbjct: 982 LLEVATAPDPPPRPKPVKMKVNRMLQPVPK--QEGRTVVVVNSPRTPL 1027
Score = 55 (24.4 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 216 ESVADEYEESKGDDVADEEQETEN 239
ES ++E EES+ ADEE+E ++
Sbjct: 531 ESESEESEESQSQSQADEEEEEDD 554
Score = 44 (20.5 bits), Expect = 8.6e-20, Sum P(3) = 8.6e-20
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 688 LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQ 747
+AA L+ DH + L++ A E L M+ +L A A + + +E++D E
Sbjct: 418 IAAEEQLEGEVDHAMELSELAREGELS-MEELLQRYAGAYASDASAPGSGSSEEEDEDEV 476
Query: 748 HDNIS-CK 754
N S C+
Sbjct: 477 EANSSDCE 484
Score = 43 (20.2 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 219 ADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
A E EE+ +D + + E +E + + ES ES + E+ S S+
Sbjct: 488 ATEAEEAPQEDSSSQSDSAEEQSED--EDEEHSEEEETSESSESEESESEESEESQSQSQ 545
Query: 279 VEGDE 283
+ +E
Sbjct: 546 ADEEE 550
Score = 39 (18.8 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRD 26
DD++ ++VE + ND R+
Sbjct: 300 DDEETIEVEEQQEGNDAETQRRE 322
Score = 39 (18.8 bits), Expect = 8.6e-20, Sum P(3) = 8.6e-20
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 612 KRIGSAVAKELRE 624
+RI SA+AK++R+
Sbjct: 192 RRIASAMAKDVRQ 204
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 339 (124.4 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 104/330 (31%), Positives = 168/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 523 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 582
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E T K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 583 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 642
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 643 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 690
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 691 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 745
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++ + +LTS Q+ LY+A N E +L + GS
Sbjct: 746 LRRIKKDVENE--------LSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGST 797
Query: 688 LAA-------LTIL---KKICDHPLLLTKR 707
A + ++ +K+C+HP L ++
Sbjct: 798 QQAQNTTSSLMNLVMQFRKVCNHPELFERQ 827
Score = 317 (116.6 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 761 LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +V DFQ +
Sbjct: 1112 LLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRND 1171
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V VYRL+ G
Sbjct: 1172 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1231
Query: 881 TVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLSLPKQ 924
T+EE+I ++ + GG FK T + KE + ++L + L L ++
Sbjct: 1232 TIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQE 1286
Score = 55 (24.4 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 244 LKRNEPRWVDNNLVSARES-----FESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQ 298
LK++ +W+ + L+S S E N D EE+ SLS E L R+H+ KK HQ
Sbjct: 119 LKKSR-KWLKSILLSDESSEADSQSEDN-DDEEEELSLSREELHNML-RLHKYKKLHQN- 174
Query: 299 KKNEPKRVHDGERFNGQSFVSGGREEYD 326
K ++ K + +++ Q + +G YD
Sbjct: 175 KYSKDKEL---QQY--QYYSAGLLSTYD 197
Score = 47 (21.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 716 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 755
Score = 44 (20.5 bits), Expect = 3.6e-53, Sum P(3) = 3.6e-53
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE S E+ +HH Q K K HD
Sbjct: 234 DEEFSS-EESPRHHHHQTKVFAKFSHD 259
Score = 40 (19.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 136 RDILNDLSARLEILS 150
+D+ N+LS ++EIL+
Sbjct: 751 KDVENELSDKIEILT 765
Score = 37 (18.1 bits), Expect = 7.9e-23, Sum P(3) = 7.9e-23
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 604 PHDRKVIRRFWS 615
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 364 (133.2 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
Identities = 101/332 (30%), Positives = 170/332 (51%)
Query: 387 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
+ P G L +Q +G++WL SL G GIL D MGLGKT+Q GFL+ L + L
Sbjct: 193 LCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGP 252
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG----VLLTTYD 502
LV+AP + LS+W E+ S Y G + + +++ + G +++T+Y+
Sbjct: 253 YLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYE 312
Query: 503 IVRNNSKS-LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
+ N++K LR W Y+++DEGH +KN + + L + +++++
Sbjct: 313 VAMNDAKRILRHYP------------WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLL 360
Query: 562 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
+GTP+QNNL ELW+L NF P++ + F+ ++ N+ + EKR V+K
Sbjct: 361 TGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK- 419
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL- 680
L ++P+ LRR+K +V +L +K E+I++ +T Q++ E +N+ +
Sbjct: 420 LHGILRPFILRRMKCDV--------ELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAH 471
Query: 681 ---SAFDGS----PLAALTI-LKKICDHPLLL 704
+A G L L I L+K C+HP LL
Sbjct: 472 LGENAIRGQGWKGKLNNLVIQLRKNCNHPDLL 503
Score = 283 (104.7 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
Identities = 64/176 (36%), Positives = 99/176 (56%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K + LL +L H VLIFSQ K+L+++ KG++ RIDG+ K +R + +
Sbjct: 525 KFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIK 584
Query: 814 DFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 872
DF E IFLL+++ GGLG+ LT AD I+ D WNP D Q++DR +RIGQ K V
Sbjct: 585 DFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 644
Query: 873 VYRLMTCGTVEEKI----YRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQ 924
VYRL T ++E ++ Y K + + H+E+ + + + ++L+L K+
Sbjct: 645 VYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDILALLKE 700
Score = 37 (18.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEK-DDFQEQHDNISCK 754
D+ LLLT ++ L + S+LN L + H D E DF E++ N + K
Sbjct: 355 DNKLLLTGTPLQNNLSELWSLLN---FILPDIFTSH--DEFESWFDFSEKNKNEATK 406
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 330 (121.2 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
Identities = 78/227 (34%), Positives = 127/227 (55%)
Query: 688 LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---F 744
L+ LT+L+K+ +H LL A ++++ + +++ D +K F
Sbjct: 444 LSYLTVLQKVANHVALLQ---AASTSKHQETVIK----RICDRVFSRFPDFVQKSKDAAF 496
Query: 745 QEQHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT 803
+ D S K+ + LL+ + VL+FS + K+L+++Q+ + G + R+DG+T
Sbjct: 497 ETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGST 556
Query: 804 KASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863
K+ +R+KIV +F I L+++ GGLGL A+ VI+ DP WNP+ D Q+VDRAY
Sbjct: 557 KSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAY 616
Query: 864 RIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
RIGQ +DV V RL++ GTVEE +Y +Q++K L + RYF
Sbjct: 617 RIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 663
Score = 317 (116.6 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
Identities = 97/318 (30%), Positives = 152/318 (47%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----- 442
+P I L +QREG ++L+ + +G+G ILGDDMGLGKT+Q+ FLA + H +
Sbjct: 114 IPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTRED 173
Query: 443 --------LIKRA------------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT 482
L+K L+VAP ++L +W EL G ++ G+
Sbjct: 174 IENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWGYF-RVTVLHGS---K 229
Query: 483 RQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541
+ EL + Q K + LTTY+ +R + L W +I+DE H IKN
Sbjct: 230 KDNELLRLKQRKCEIALTTYETLRLCLEELNSLE------------WSAIIVDEAHRIKN 277
Query: 542 PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILR 601
P + + + + RI ++GT +QNN+KELW + ++ P LLG FK+++ P+
Sbjct: 278 PKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEH 337
Query: 602 GNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR 661
G A RE G L +++ +FLRR K + L KK + +V+
Sbjct: 338 GQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLI--------KGQLPKKEDRMVYCS 389
Query: 662 LTSCQRQLYEAFLNSEIV 679
LT Q+ +Y+ L +E V
Sbjct: 390 LTDFQKAVYQTVLETEDV 407
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 324 (119.1 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 77/227 (33%), Positives = 126/227 (55%)
Query: 688 LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---F 744
L+ LT+L+K+ +H LL A ++++ + +++ D +K F
Sbjct: 457 LSYLTVLQKVANHVALLQ---AASTSKQQETLIK----RICDQVFSRFPDFVQKSKDAAF 509
Query: 745 QEQHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT 803
+ D S K+ + LL+ VL+FS + K+L+++Q+ + G + R+DG+T
Sbjct: 510 ETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGST 569
Query: 804 KASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863
K+ +R+KIV +F I L+++ GGLGL A+ V++ DP WNP+ D Q++DRAY
Sbjct: 570 KSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAY 629
Query: 864 RIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
RIGQ +DV V RL++ GTVEE +Y +QI+K L + RYF
Sbjct: 630 RIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYF 676
Score = 323 (118.8 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 101/319 (31%), Positives = 154/319 (48%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----- 442
+P I L +QREG R+L+ + G G ILGDDMGLGKT+Q+ FLA + H +
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 185
Query: 443 --------LI-------------KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVK 481
L+ K L+VAP ++L +W EL G ++ G
Sbjct: 186 IENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYF-RVTVLHGN--- 241
Query: 482 TRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
+ EL V Q K + LTTY+ +R DE + W +I+DE H IK
Sbjct: 242 RKDNELIRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAHRIK 289
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
NP + + + + RI ++GT +QNN+KELW + ++ P LLG +FK+++ P+
Sbjct: 290 NPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVE 349
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
G A RE G + L +++ +FLRR K + +D L KK + +V+
Sbjct: 350 HGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLI--KDQ------LPKKEDRMVYC 401
Query: 661 RLTSCQRQLYEAFLNSEIV 679
LT Q+ +Y+ L +E V
Sbjct: 402 SLTDFQKAVYQTVLETEDV 420
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 592 (213.5 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 172/587 (29%), Positives = 295/587 (50%)
Query: 369 SVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSL-----HCQG-KGGILGDD 422
S L++EG+ + Y IG L PHQR G+++L+ + G G IL D
Sbjct: 257 SQLDEEGNKVVHVVLDPY-----IGRHLRPHQRRGVKFLYDCVTGNSNDNGYSGAILADQ 311
Query: 423 MGLGKTMQICGFLAGL-----FHSRLIKRALVVAPKTLLSHWIKELTA-VGLSAKIREYF 476
MGLGKT+Q L L + IK+A++V P TL+++W E+ G I
Sbjct: 312 MGLGKTLQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFGNGRLIASTL 371
Query: 477 -GTCVKTRQYELQ-YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILD 534
+ K + L + K VL+ +Y+ R SK L S G M+ D
Sbjct: 372 TDSLTKETKANLNDFNTSIKPVLIISYEQCRIFSKELETMS-----CG-------LMVCD 419
Query: 535 EGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEK 594
E H +KN + + +S++ + +I+++GTPIQNNL E +++ +F P LG FK+
Sbjct: 420 EAHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKS 479
Query: 595 YELPILRGNDK-HALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKK 653
+ +PI + + ++ + I ++ +L + ++P+ +RR K+ + + L K
Sbjct: 480 FIIPINKSRESPNSTSTSEGIRKSI--QLSKLVKPFIIRR-KSNILEK-------YLPPK 529
Query: 654 NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTK 706
I++ +L+S Q +LY++ LNS V S G + L+ +T+LKK+C+ P LL
Sbjct: 530 RVQIIFCKLSSLQIELYKSILNSNSVKSLLSGGGSRGSATSLSTITLLKKLCNSPSLLLL 589
Query: 707 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI 766
+D +G + + + L H + + QEQ DN S K+ F+ SL+ +L
Sbjct: 590 NNKQD--EGGEQ----QQTEIQNILKKHNYTLENYQEIQEQQDNESGKLLFVESLIKQLK 643
Query: 767 PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG--DVAP-- 822
P +++ S K L++ + LR+DG KA R +V+ F +V+
Sbjct: 644 PMNEKLVLVSNFTKTLDVFERLCKRLSIDTLRLDGDVKADSRQALVDKFNSSTQNVSSSK 703
Query: 823 -------IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+FLL+++ GG+G+ L + +++ DP WNP+ D Q+++R +R GQ K V +YR
Sbjct: 704 SSSSQYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERIWREGQTKPVFIYR 763
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHK--EQIRYFSQQDLRELLS 920
L + GT+EEKIY++Q+ K + + + K + FS +DL+++ S
Sbjct: 764 LFSTGTIEEKIYQRQLMKESISNSIVDKKFNDNGGNFSLEDLKDIFS 810
Score = 46 (21.3 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 20/101 (19%), Positives = 40/101 (39%)
Query: 30 VESRSVIDEEKPQKVKIEGRRRLCKVSSR-DVDNTENRAVVDDEPNFSDITDFDSPLQSK 88
+ES V + + R+L K + + E + DE ++I + K
Sbjct: 164 LESSLVSNSTSSSSLSTTTIRKLSKKQQKLQEEEEEKQQQQQDEKQTTNINKSTIKKEFK 223
Query: 89 TVSAMVNIES--RAVIDDGPKFSDITVFDSPPKAKTVSEND 127
+ +++ +S + V P D +F SPP ++ E +
Sbjct: 224 SHTSLEEQKSSKKIVCPHDPNSKDALIFYSPPPSQLDEEGN 264
Score = 38 (18.4 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1001 SYLVARN-VDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKE 1042
S+L N ++ E N ++ +KK S+ K E +E +E
Sbjct: 911 SFLEVENQIEDEEEDNNQQNTTPSKKRSNKKKEVDEEEEQEEE 953
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 368 (134.6 bits), Expect = 4.7e-54, Sum P(4) = 4.7e-54
Identities = 140/518 (27%), Positives = 234/518 (45%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLV-SARESFES--NLDGEEDGGSLSEV 279
E S A E+ N+ I LK + ++ V +R E LD E S S V
Sbjct: 511 ENSPASTEATPTDESLNL-IQLKEKYGHFNGSSTVYDSRNKDEKFPTLDKHESSSSESSV 569
Query: 280 -EGDE---HLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVS 335
G+E + S +E++ + R+ ++ V F G+ S G + DD +D + S
Sbjct: 570 MTGEESSIYSSSENESQNENDRESDDKTPSVGLSALF-GKGEESDGDLDLDDSEDFTVNS 628
Query: 336 GKLVVNR--PDRRDGKLNKSAHSG-LVNVLDDYSDD-SVLEDEGSITLSGPRSTYM---L 388
+ D+ D +G V+ ++ DD +E++ + + + + +
Sbjct: 629 SSVEGEELEKDQVDNSAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSVVDVPV 688
Query: 389 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRA 447
P + L +Q++GL WL SL+ GIL D+MGLGKT+Q LA L
Sbjct: 689 PSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPH 748
Query: 448 LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRN 506
L+V P ++L +W E K+ Y+G+ + ++ + D V + +Y +V
Sbjct: 749 LIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQ 808
Query: 507 NSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566
+ S + W YM+LDE H IKN + R ++LL + R++++GTP+
Sbjct: 809 DQHSFKRKR------------WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPL 856
Query: 567 QNNLKELWALFNFCCPELLGDNK-------------WFKEKYELPILRGNDKHALDREKR 613
QNNL ELW+L F P+ + D K WF + I+ D+E +
Sbjct: 857 QNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVD-KIIETGQNFGQDKETK 915
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
VAK L + ++PY LRRLK +V + + K E IV+ +L+ QR LY+ F
Sbjct: 916 --KTVAK-LHQVLRPYLLRRLKADVEKQ--------MPAKYEHIVYCKLSKRQRFLYDDF 964
Query: 674 LN-SEIVLSAFDGSPLA---ALTILKKICDHPLLLTKR 707
++ ++ + G+ ++ L L+K+C+HP L R
Sbjct: 965 MSRAQTKATLASGNFMSIVNCLMQLRKVCNHPNLFEVR 1002
Score = 300 (110.7 bits), Expect = 4.7e-54, Sum P(4) = 4.7e-54
Identities = 70/190 (36%), Positives = 106/190 (55%)
Query: 738 VAEKDDFQEQHDNISC-KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
+A D Q+D C K+ + LL +L GH LIF+Q K+L+++++ + GY +
Sbjct: 1233 IAFPDKSLLQYD---CGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLY 1289
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
+R+DG TK DR + F +F+L+S+ GGLG+ LT AD VI D WNP+ D
Sbjct: 1290 MRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDK 1349
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDL 915
Q DR +RIGQ +DV +YR ++ T+E I +K K L + + YFS+ +
Sbjct: 1350 QCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSV 1409
Query: 916 RELLS--LPK 923
R+LL LP+
Sbjct: 1410 RDLLGSELPE 1419
Score = 54 (24.1 bits), Expect = 4.4e-21, Sum P(5) = 4.4e-21
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 232 DEEQETENVG-IGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHE 290
+EE+ +++ ++ + RW N+ A +++ EE+ L +EG +HLS++ E
Sbjct: 401 EEERHKKSLARFAVQAVKKRW---NM--AEKAYRILRKDEEE--QLKRIEGKQHLSKMLE 453
Query: 291 TKKHHQRQKKNEPKRVHDGERFNGQSFVSGG--REEYDDEDD 330
+ N+ V+D R + S S E DD DD
Sbjct: 454 KSTQLLEAQLNQ---VNDDGRSSTPSSDSNDVLSESDDDMDD 492
Score = 52 (23.4 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 51/258 (19%), Positives = 102/258 (39%)
Query: 37 DEEKPQKVKIEGRRRLCKVSSRDVDNTENRA-VVDDEPNFSDITDFDSPLQSKTVSAMVN 95
DEE+ K +IEG++ L K+ + E + V+D+ S + + + S++ M +
Sbjct: 434 DEEEQLK-RIEGKQHLSKMLEKSTQLLEAQLNQVNDDGRSSTPSSDSNDVLSESDDDMDD 492
Query: 96 IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRR 155
S + +D +D+ + +SP + + D ++++ + + D R
Sbjct: 493 ELSTSSDEDEEVDADVGLENSPASTEA-TPTDESLNLIQLKEKYGHFNGSSTVY--DSR- 548
Query: 156 VPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYXXXXXXXXXXXXXXXXXXGVTKD-NVGGV 214
+ ++ F L K+ + S E K +VG
Sbjct: 549 -----NKDEKFPTLDKHESSSSESSVMTGEESSIYSSSENESQNENDRESDDKTPSVG-- 601
Query: 215 VESVADEYEESKGD-DVADEEQETENVG-IGLKRNEPRWVDNNLVSARESFESNLDGEED 272
+ ++ + EES GD D+ D E T N + + E VDN+ + + + E+
Sbjct: 602 LSALFGKGEESDGDLDLDDSEDFTVNSSSVEGEELEKDQVDNSAATFERAGDFVHTQNEN 661
Query: 273 GGSLSEVEGDEHLSRVHE 290
+ +VE D ++V E
Sbjct: 662 RDDIKDVEEDAE-TKVQE 678
Score = 47 (21.6 bits), Expect = 4.7e-54, Sum P(4) = 4.7e-54
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 9 VKVE--AEVRTNDCSVLS-RDHDHVESRSVIDEEKP-QKVKIEGRRRLCKVSSRDVDNTE 64
+K+E A + N C L + DH +S++ +++P Q +K + K S +N
Sbjct: 115 LKLESIAPLVRNKCEELKYKLSDHSNRKSIVPQKRPIQHLKKREAAKSLKFKSERKENPL 174
Query: 65 NRAVVDDEPNFSDITDFDSPLQSKTV 90
E + I + P ++ T+
Sbjct: 175 PLHEHIAEERYDHIAKVEEPSEAFTI 200
Score = 44 (20.5 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 712 VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQ 745
V D + S L PE+A+ +K + ADVA KD Q
Sbjct: 1409 VRDLLGSEL-PENASGGDKPLIADADVAAKDPRQ 1441
Score = 40 (19.1 bits), Expect = 4.4e-21, Sum P(5) = 4.4e-21
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 419 LGDDMGLG-----KTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458
L DD +G K MQ C ++ H K + K+LL +
Sbjct: 1199 LNDDSSVGENTRLKVMQNCFEVSNPLHQLQTKLTIAFPDKSLLQY 1243
Score = 39 (18.8 bits), Expect = 4.7e-54, Sum P(4) = 4.7e-54
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 913 QDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLE 950
+ L LL+ + DV + E D + DES E
Sbjct: 1440 RQLERLLAQAEDEDDVKAANLAMREVEIDNDDFDESTE 1477
Score = 38 (18.4 bits), Expect = 5.9e-54, Sum P(4) = 5.9e-54
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 915 LRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDE-SLEAHI 953
+RE+ + FD S ++ +EE + +DE AH+
Sbjct: 1462 MREV-EIDNDDFDESTEKKAANEEEENHAELDEYEGTAHV 1500
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 341 (125.1 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 118/403 (29%), Positives = 184/403 (45%)
Query: 324 EYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPR 383
++D EDD + + + + + A D DDS L + +L
Sbjct: 728 DFDAEDDTALRQAAMANAQSAVQKAQERARAFDDPNKSTMDTMDDSELNFQNPTSLGDIE 787
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL 443
+ P + L +Q +GL WL +L+ QG GIL D+MGLGKT+Q +A L
Sbjct: 788 ISQ--PTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHN 845
Query: 444 IKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ-----YELQYVLQDKG-- 495
I LV+AP + L +W +E+T + K+ Y+G K R+ ++ +++ K
Sbjct: 846 IWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNA-KDRKILRKFWDRKHITYTKESE 904
Query: 496 --VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
VL+T+Y +V + D W YMILDE IK+ + R KSLL
Sbjct: 905 FHVLVTSYQLV------------VLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGF 952
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+R++++GTPIQNN++ELWAL +F P L + F E + I + HA K
Sbjct: 953 HCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDI----ESHAQSNTK- 1007
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
+ + L ++P+ LRR+K V E L K E V+ LT QR LY
Sbjct: 1008 LNEDQLRRLHMILKPFMLRRVKKHVQQE--------LGDKVEKDVFCDLTYRQRALYTNL 1059
Query: 674 LNS----EIVLSAFDGSPLAALTIL------KKICDHPLLLTK 706
N +++ A G + T++ +K+C+HP L +
Sbjct: 1060 RNRVSIMDLIEKAAVGDETDSTTLMNLVMQFRKVCNHPDLFER 1102
Score = 316 (116.3 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 62/142 (43%), Positives = 97/142 (68%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K++ + LL +L GH VL++ Q +M++L++E + + YK+ R+DG+TK DR
Sbjct: 1320 SGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDT 1379
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V DFQ+ +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V
Sbjct: 1380 VADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1439
Query: 872 VVYRLMTCGTVEEKIYRKQIFK 893
VYRL+T T+EE+I ++ + K
Sbjct: 1440 TVYRLITRSTIEERIRKRALQK 1461
Score = 42 (19.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 60 VDNTENRAVVDDEPNFSDI-TDFDSPLQSKTVSAMVNIE 97
V + RA D+PN S + T DS L + +++ +IE
Sbjct: 749 VQKAQERARAFDDPNKSTMDTMDDSELNFQNPTSLGDIE 787
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 578 (208.5 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
Identities = 170/561 (30%), Positives = 283/561 (50%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q GL WL +H Q GIL D+MGLGKT+Q+ FLA L + L + A L+V
Sbjct: 286 GLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVV 345
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD-KG--VLLTTYDIVRNNS 508
P + L +W E++ + +Y G+ + R+ ++ G VLLTTY IV +
Sbjct: 346 PSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTP 405
Query: 509 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
+ + DY+I DE H++KN +TQR +L+ I + RI+++GTP+QN
Sbjct: 406 EERKMFRVCK---------LDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQN 456
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
NL EL +L F P+ K ++ L +G D + + + ++P
Sbjct: 457 NLLELISLLCFVMPKFFA--KSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKP 514
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL 688
+ LRRLK +V ++ +L +K M ++ + Y + E V S+ + + +
Sbjct: 515 FVLRRLKKDVLK--NLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGE-VCSSSERAGI 571
Query: 689 AALTILKKICDHPLLLTKRAAEDVLDGMDSML-------NPEDAALAEKLAM----HIAD 737
A + +++I +HPLL+ + L G L + + E+LA+ +
Sbjct: 572 AIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSDFQVYQ 631
Query: 738 VAEKDDFQEQH--DNISC---KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK 792
+ K +F + DN+ C K ++ +LL KL EGH VL+FSQ ML++++E + +
Sbjct: 632 MMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIR 691
Query: 793 GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 852
+ F R+DG T + R ++ DF D +FLL+++ GG+G+ LT AD ++ D +NP
Sbjct: 692 KFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNP 751
Query: 853 STDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQ 912
D Q+ DR +R+GQ++ V +YRL++ T+EE I K L K T + E+ Q
Sbjct: 752 YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSN-EKGEVHEQ 810
Query: 913 QDLRELLSLPKQGFDVSLTQQ 933
+ + +LL+ G D +Q
Sbjct: 811 RCVVKLLTTAL-GLDKDQEEQ 830
Score = 47 (21.6 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
Identities = 39/168 (23%), Positives = 73/168 (43%)
Query: 215 VESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG 274
++ +AD +S G+D + ++T+ + + +K E R++ +S F++ E
Sbjct: 53 IQVMADS--DSDGND-SQTPKKTK-LELTVKEKEERYMAAAKISPH--FDTMAIQE---- 102
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEP-KRVHDGERFNGQSFVSGGR-EEYDDEDDCV 332
SLS D S V +++ + + N P + R NG +SGG + D DD
Sbjct: 103 SLSRTNWDVAAS-VRYLRENCKPKGHNGPLAKSKLKPRSNG---ISGGNFSDNDHSDDDD 158
Query: 333 IVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLS 380
+ K V D D +++ V ++ S++E + TLS
Sbjct: 159 VKQSKDQVYDSDDSDSEMSTKMTGQRKKVFQFMNEASLIELQSVKTLS 206
Score = 43 (20.2 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 14 EVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSS-RDVDNTENRAVVDDE 72
+V+ + V D E + + ++ + + L ++ S + + + A++D
Sbjct: 158 DVKQSKDQVYDSDDSDSEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVR 217
Query: 73 PNFSDITDFDSPLQSKTVS 91
P FSD +D L+S +S
Sbjct: 218 P-FSDWSDLRQKLESIRMS 235
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 351 (128.6 bits), Expect = 7.5e-54, Sum P(3) = 7.5e-54
Identities = 104/325 (32%), Positives = 159/325 (48%)
Query: 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI 444
T M G +L P+Q +GL W+ SL+ GIL D+MGLGKT+Q + L +
Sbjct: 522 TTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQN 581
Query: 445 KRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDI 503
LV+ P + LS+W E S Y GT R+ E Q VL+TTY+
Sbjct: 582 NGPYLVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEY 641
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSA-HRIIIS 562
V K+L G W YMI+DEGH +KN + + L A HR++++
Sbjct: 642 VIKE-KALLGK-----------IRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLT 689
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QN L ELWAL NF P + F++ + P +K L++E+ + + + L
Sbjct: 690 GTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETM--LIIRRL 747
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA 682
+ ++P+ LRRLK EV + L K E ++ ++ Q+ +Y + ++L A
Sbjct: 748 HKVLRPFLLRRLKKEV--------ESQLPDKTEYVIKCDQSALQKVIYR-HMQKGLLLDA 798
Query: 683 FDGSPLAAL--TI--LKKICDHPLL 703
S +L T+ L+K+C+HP L
Sbjct: 799 KMSSGARSLMNTVVHLRKLCNHPFL 823
Score = 298 (110.0 bits), Expect = 7.5e-54, Sum P(3) = 7.5e-54
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 759 LSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLD+++P+ GH +L+F Q M+N+ ++ + + Y +LR+DG+TK +R ++
Sbjct: 852 LELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQ 911
Query: 815 FQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 872
F D+ +F+L+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQKK+V
Sbjct: 912 FNAPNSDLF-LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVR 970
Query: 873 VYRLMTCGTVEEKI-----YR----KQIFKGGLF---KTATEHKEQIRYFSQQDLRE 917
V RL+T +VEEKI Y+ +++ + G F T E K+ + Q D E
Sbjct: 971 VLRLITANSVEEKILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEE 1027
Score = 56 (24.8 bits), Expect = 7.5e-54, Sum P(3) = 7.5e-54
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 246 RNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEG-DEHLSRVHETKKHHQ---RQKKN 301
RNE + + E + + LD ++D + ++ DE++ + + HQ ++KK
Sbjct: 333 RNEKLRMQKLMQEDEEGYRALLDEKKDQRLVYLLQQTDEYVDSLCSLVRQHQNTEKKKKK 392
Query: 302 EPKRVHDGERFNGQSFV 318
E K++ G + + ++ V
Sbjct: 393 EDKKIEKGNQMDEEARV 409
Score = 51 (23.0 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 566 IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE--LR 623
IQN + L N P + D+ K + EL LR + R + + + + ++ L
Sbjct: 186 IQNRIGLRMKLLNNL-PADIPDHMKLKAEIELRALRLVNLQTQVRSE-VMACLKRDTTLE 243
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNE 655
+ PY RR K + E VT +K E
Sbjct: 244 TALNPYAYRRTKRQSLREARVTEKLEKQQKME 275
Score = 43 (20.2 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 290 ETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
E KK + + +E RVH ER G++ ++G + +E
Sbjct: 393 EDKKIEKGNQMDEEARVHVRERSTGKA-LTGDQAPKTEE 430
Score = 41 (19.5 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 221 EYEESKGDDVADEEQETE 238
EYE D ++D+E+E E
Sbjct: 440 EYEIVPRDQLSDDEEEEE 457
Score = 40 (19.1 bits), Expect = 3.5e-52, Sum P(3) = 3.5e-52
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLK-RNE 248
E E EE K D A ++ET+ I K RNE
Sbjct: 458 EEAPVEPEEEKDDQYAGMDEETKAKMILEKARNE 491
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 344 (126.2 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 101/324 (31%), Positives = 169/324 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKT 454
L P+Q +G+ W+ +L+ QG GIL D+MGLGKT+Q LA L + I L+V PK+
Sbjct: 1162 LKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIVTPKS 1221
Query: 455 LLSHWIKELTAVGLSAKIREYFGTCVKT---RQY----ELQYVLQDKGVLLTTYDIVRNN 507
L +W E + K+ Y+GT + R+Y +L + VL+T+Y+++
Sbjct: 1222 TLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVI--- 1278
Query: 508 SKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQ 567
+ DE W YM+LDE H IK+ ++ R K+L+ +R++++GTPIQ
Sbjct: 1279 ---------VRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQ 1329
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627
N++ ELWAL +F P + F E + I + HA+ + + L ++
Sbjct: 1330 NSMAELWALLHFIMPTFFDSHDEFAEWFSKDI----ENHAMS-QGGLNEHQLNRLHMILK 1384
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS----EIVLSA- 682
P+ LRR+K +V E+++ S K E+ V+ LT Q++LY++ ++ E++ A
Sbjct: 1385 PFMLRRIKRDV--ENEMPS------KTEVEVYCNLTHRQKKLYQSIRSNISITELLGGAS 1436
Query: 683 FD--GSPLAALTIL---KKICDHP 701
F GS A + + +K+C+HP
Sbjct: 1437 FSEQGSMKALMNFVMQFRKVCNHP 1460
Score = 320 (117.7 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 69/162 (42%), Positives = 104/162 (64%)
Query: 759 LSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L +LDKL+ + GH VLI+SQ KM+N++++ + + YK+LR+DG++K DR +V+D
Sbjct: 1769 LQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDD 1828
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
FQ FLL+++ G+G+ LT AD VI D WNP+ D Q+ DRA+R+GQ + V VY
Sbjct: 1829 FQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVY 1888
Query: 875 RLMTCGTVEEKIYR--KQ-------IFKGGLFKTATEHKEQI 907
RL+T T+EEKI + KQ + GG F++ E +Q+
Sbjct: 1889 RLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEELDQV 1930
Score = 50 (22.7 bits), Expect = 4.1e-53, Sum P(4) = 4.1e-53
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 247 NEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSR 287
N ++NN ++R +S D E G S E GD +R
Sbjct: 337 NNSNNINNNSNNSRSDRDSRSDRERSGRSDRESRGDSKSNR 377
Score = 45 (20.9 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
Identities = 20/102 (19%), Positives = 40/102 (39%)
Query: 70 DDEPNFSDITDFDSPLQ--SKTVSAMVNIESRAVID-DGPKFSDITVFDSPPKAKTVSEN 126
D + +FS S + S S + +I+S + G F +++ + + +N
Sbjct: 552 DSDVDFSTTPTLSSHISKYSPAQSPLPSIKSIPPMPLSGNSFEPLSIGNQRNSTDNLYDN 611
Query: 127 DNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSR 168
N K N + N++ L+ S D ++ + E R
Sbjct: 612 SNNKNNNNNYNNNNNMLKNLDFNSNDHSKLDNILLSEKSIER 653
Score = 43 (20.2 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 230 VADEEQETENV--GIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEH 284
+ ++ T+N+ K N + +NN + F SN + D LSE + H
Sbjct: 598 IGNQRNSTDNLYDNSNNKNNNNNYNNNNNMLKNLDFNSNDHSKLDNILLSEKSIERH 654
Score = 43 (20.2 bits), Expect = 6.5e-53, Sum P(4) = 6.5e-53
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 216 ESVADEYEESKGDDVADEEQETE 238
ES ++E EES D+ E+++ E
Sbjct: 1051 ESSSEEEEESSDDEGKTEQEKKE 1073
Score = 40 (19.1 bits), Expect = 4.1e-53, Sum P(4) = 4.1e-53
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 350 LNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTY 386
++K L+ +L+++ DS ++ + TLS S Y
Sbjct: 534 ISKKDREQLMELLNEHESDSDVDFSTTPTLSSHISKY 570
Score = 40 (19.1 bits), Expect = 1.7e-21, Sum P(4) = 1.7e-21
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 301 NEPKRVHDGERFNGQSFVSGGREEY 325
NE R+++G FN + V GG E Y
Sbjct: 1625 NED-RLNNG-LFNVKDLVIGGNERY 1647
Score = 39 (18.8 bits), Expect = 5.6e-52, Sum P(4) = 5.6e-52
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 224 ESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESN 266
ES+GD ++ + + + N +NN +S+ S SN
Sbjct: 368 ESRGDSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSS-SSN 409
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 581 (209.6 bits), Expect = 2.2e-53, P = 2.2e-53
Identities = 182/586 (31%), Positives = 291/586 (49%)
Query: 360 NVLDDYSDDSVLEDE-GSITLSGPRSTYMLPGKI--GNMLFPHQREGLRWLWSLHCQGKG 416
N+ DD + L GSI+ P I G L +Q GL WL ++
Sbjct: 378 NLFDDKKMEQFLNTSTGSISYE---YNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLS 434
Query: 417 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYF 476
GIL D+MGLGKT Q+ FLA L + R LVV P + L +W++E S ++ Y
Sbjct: 435 GILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKFCPSLRVESYS 494
Query: 477 GTCVKTRQYELQYVLQDKG--VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILD 534
GT ++ + +Y L D VL+TTY + + S+ R SF+ + +D I D
Sbjct: 495 GT--QSERINKRYYLMDTDFDVLVTTYQLA-SGSRDDR--SFLRKQR------FDISIFD 543
Query: 535 EGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN-KWFKE 593
EGH +KN ++R K L+ IP+ R++I+GTP+QNNLKEL +L F P++ +N +
Sbjct: 544 EGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDI 603
Query: 594 KYELPILRGND-KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSK 652
Y++ D + A ++RI A K + + P+ LRR K V + L
Sbjct: 604 IYKIKTTSDGDIERAYLSQERISRA--KTI---MNPFILRRRKENVLSD--------LPP 650
Query: 653 KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDV 712
K + + + + Q LY + L + +++A + L L +K H LL + +
Sbjct: 651 KIQHVEYCHMEETQLSLYLSVLELKNLVNANRENILMQL---RKAALHQLLFRSQYNLET 707
Query: 713 LDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQ-----EQHDNI------------SCKI 755
L M + EDA L D+ DF+ +Q+ ++ S K+
Sbjct: 708 LSLMSKRILREDAYLDANPQYIFEDMEVMSDFELHKLADQYRHLHPFALKGKPWMDSAKV 767
Query: 756 SFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDF 815
+ SLL K P +LIFSQ ++L++++ + + +FLR+DG+T R ++++DF
Sbjct: 768 KKLCSLLKKSRPN-ERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDF 826
Query: 816 QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+ +FLL+++ GG G+ LT A+ VI+ D ++NP D Q+ DRA+R+GQ + V VYR
Sbjct: 827 HTNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYR 886
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
L+T T+EE I R K L + T E+I+ +L + L +
Sbjct: 887 LITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMKSLQM 932
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 308 (113.5 bits), Expect = 2.6e-53, Sum P(3) = 2.6e-53
Identities = 88/253 (34%), Positives = 138/253 (54%)
Query: 390 GKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK-RAL 448
G G L P+Q +G+ WL + G ILGD+MGLGKT Q L L K R+L
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLLLYLTKKLTNKERSL 99
Query: 449 VVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTTYDIVR 505
++ P ++LS+W +EL Y G K +Y+LQ L+++ VLLTTY+I
Sbjct: 100 ILCPLSVLSNWKEELERFAPGLSFVTYVGN--KEERYKLQQNLKEQSHFRVLLTTYEIC- 156
Query: 506 NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP 565
L+ ++F+ + D W +++DE H +KN ++ ++L E+P ++++GTP
Sbjct: 157 -----LKDAAFL--KFFD----WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTP 205
Query: 566 IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625
IQN+L+EL++L +F P++ K KE E A+++E S AKEL
Sbjct: 206 IQNSLQELYSLLSFIEPDIF-PRKQVKEFVEY-------YQAVEKE----SEPAKELHNL 253
Query: 626 IQPYFLRRLKNEV 638
+QP+ LRR+K+EV
Sbjct: 254 LQPFLLRRVKSEV 266
Score = 277 (102.6 bits), Expect = 2.6e-53, Sum P(3) = 2.6e-53
Identities = 78/207 (37%), Positives = 116/207 (56%)
Query: 740 EKDDFQEQHDNISCKISFILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESIGSKGYK 795
E + F E D+I + S L LLDKL+ GH VL+FSQ K+L+++Q+ + +GY
Sbjct: 332 EPEPF-EIGDHI-VEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYS 389
Query: 796 FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTD 855
+ R+DG+ + +R + +F + + +FLL+++ GG+G+ LT AD VI D +NP D
Sbjct: 390 YERLDGSVRGEERHLAIKNFGQQPIF-VFLLSTRAGGVGMNLTAADTVIFTDSDFNPQND 448
Query: 856 NQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ---------IFKGGLFKTATEHKEQ 906
Q++ RA+RIGQ K V + RL+ TVEE IYR+ I +GG F HK Q
Sbjct: 449 LQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEGGQFALGV-HKPQ 507
Query: 907 IRYFSQQDLRELLSLPKQGFDVSLTQQ 933
S L E+L K G D L+ +
Sbjct: 508 EA--SDLQLSEIL---KFGLDKLLSSE 529
Score = 107 (42.7 bits), Expect = 2.6e-53, Sum P(3) = 2.6e-53
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 616 SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN 675
S AKEL +QP+ LRR+K+EV +A L KK E++++ +++ QR+ Y+A L
Sbjct: 244 SEPAKELHNLLQPFLLRRVKSEV--------TADLPKKVEVVLYHGMSALQRKYYKAILT 295
Query: 676 SEIVLSAFDGSP-----LAALTI-LKKICDHPLL 703
+ L AF+G L + I L+K HP L
Sbjct: 296 KD--LDAFEGGTGRKVMLQNVLIQLRKCVAHPYL 327
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 328 (120.5 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 108/340 (31%), Positives = 163/340 (47%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS------ 441
+P I L +QREG ++L+ + +G ILGDDMGLGKT+Q+ FLA + H
Sbjct: 26 IPYTINRYLRGYQREGAQFLYWHYANKRGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 85
Query: 442 ----------RLIKRA---------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT 482
R +K+ L+VAP ++L +W EL G K+ G+
Sbjct: 86 IENNMPEFLQRTMKKESKCNPKKTFLIVAPLSVLYNWKDELDTWGYF-KVSVLHGS---K 141
Query: 483 RQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541
++ +L + Q K V LTTY+ +R DE + W +I+DE H IKN
Sbjct: 142 KEGDLNRIKQGKCEVALTTYETLR----------LYLDELNNIG--WSAVIVDEVHRIKN 189
Query: 542 PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILR 601
P +Q +++ + RI ++GT +QNN+ ELW + ++ P LLG FK+K+ P+ R
Sbjct: 190 PKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKKKFSDPLER 249
Query: 602 GNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR 661
G A RE G +L ++ +FLRR K V S L KK + +V+
Sbjct: 250 GQRHTATKRELATGRKAMVKLARKMSSWFLRRTK--------VLISDQLPKKEDRMVYCS 301
Query: 662 LTSCQRQLYEAFLNSE---IVLSAFDGSPLAALTILKKIC 698
LT Q+ +Y A L +E +VL A + + I K C
Sbjct: 302 LTEFQKAVYRAVLKTEDVSLVLRAREPCSCNSGRIRKNCC 341
Score = 325 (119.5 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 76/208 (36%), Positives = 123/208 (59%)
Query: 688 LAALTILKKICDHPLLL-TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 746
L+ LTIL+K+ +H LL T ++ + + N ++ + + + D A F+
Sbjct: 356 LSYLTILQKVANHVALLQTDNTSKQQETHIKRVCNEVFSSFPDFMQLS-KDAA----FET 410
Query: 747 QHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA 805
D S K+ + LL+ VL+FS + K+L+++++ + G F R+DG+TK+
Sbjct: 411 ISDPKYSGKMRVLQQLLNHFRKNKDKVLLFSFSTKLLDVLEQYCIASGLDFRRLDGSTKS 470
Query: 806 SDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865
DR++IV +F I L+++ GGLGL A+ VI+ DP WNP+ D Q++DRAYRI
Sbjct: 471 EDRIRIVREFNRVPEINICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAIDRAYRI 530
Query: 866 GQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
GQ KDV V+RL++ GTVEE +Y +Q++K
Sbjct: 531 GQCKDVKVFRLISLGTVEEMMYLRQVYK 558
Score = 37 (18.1 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 937 EEHGDQHNMDE--SLEAHIQ 954
E+ D HN+DE S E ++Q
Sbjct: 741 EKECDSHNIDEFSSSEDNLQ 760
Score = 37 (18.1 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 236 ETENVGIGLKRNEPRWVDNNLVSARESFESNLDGE 270
+TE+V + L+ EP ++ + ++ N GE
Sbjct: 315 KTEDVSLVLRAREPCSCNSGRIRKNCCYKINSHGE 349
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 568 (205.0 bits), Expect = 4.4e-53, P = 4.4e-53
Identities = 167/552 (30%), Positives = 277/552 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGG-----ILGDDMGLGKTMQICGFLAGLFHSRL--- 443
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206
Query: 444 --IKRALVVAPKTLLSHWIKELTAV--GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLT 499
I + ++V+P +L+ +W KE T G + G+ T + Q+ + L T
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGT 266
Query: 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
++ + + E G +I DEGH +KN ++L+ + + R+
Sbjct: 267 PVLLISYETFRIYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGLKTKRRV 319
Query: 560 IISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 619
++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D+E+
Sbjct: 320 LLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKT 379
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679
+EL + + +RR N++ + L K EM++ +LT Q QLY FL S+ V
Sbjct: 380 QELIKLVDQCIIRRT-NQIL-------TKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQV 431
Query: 680 LSAFDG-------SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLA 732
+ + LA +T LKK+C HP L+ ++ A G ++ N
Sbjct: 432 RRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAGE-KGFENSQN----------- 479
Query: 733 MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIGS 791
I + + E + +S K + +L + G++ V++ S + L+L +
Sbjct: 480 --ILPI-NYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARK 536
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+ Y F+R+DGT R K+V+ F E D +F+L+S+ GG GL L A+R+ + DP
Sbjct: 537 RKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLNLIGANRLFMFDPD 595
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-R 908
WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T ++ E +
Sbjct: 596 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEK 655
Query: 909 YFSQQDLRELLS 920
+F++ DL++L S
Sbjct: 656 HFTRDDLKDLFS 667
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 340 (124.7 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 2 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 61
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 62 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 115
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 116 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 169
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 170 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 227
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 228 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 279
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 280 GKGGTKTLMNTIMQLRKICNHPYM 303
Score = 299 (110.3 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 336 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 395
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 396 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 455
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 456 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 500
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 408 (148.7 bits), Expect = 4.9e-53, Sum P(2) = 4.9e-53
Identities = 87/240 (36%), Positives = 143/240 (59%)
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHD 749
+LT+ ++ + L E + DG + L D + K+ H D+ E++ + D
Sbjct: 664 SLTVEQR-STYRAFLASSEVEQIFDGNRNSLYGID--VMRKICNH-PDLLEREHSHQNPD 719
Query: 750 ----NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA 805
S K+ + +L +GH VL+FSQT++ML++++ + + Y + R+DG T
Sbjct: 720 YGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPV 779
Query: 806 SDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865
R+ ++++F + +F+LT++VGGLG LT A+RVI+ DP WNPS D Q+ +RA+RI
Sbjct: 780 KQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRI 839
Query: 866 GQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQG 925
GQKKDV VYRL+T GT+EEK+Y +QI+K L ++ +Q R+F +D+++L L G
Sbjct: 840 GQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDG 899
Score = 325 (119.5 bits), Expect = 2.1e-43, Sum P(3) = 2.1e-43
Identities = 84/230 (36%), Positives = 128/230 (55%)
Query: 482 TRQYE--LQYVLQ-DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538
T++++ L VL + G+L+TTY+ +R L+G ++ E W Y +LDEGH
Sbjct: 502 TKKWDSLLNRVLNSESGLLITTYEQLR-----LQGEKLLNIE-------WGYAVLDEGHR 549
Query: 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 598
I+NP++ ++ + HRII++G PIQN L ELW+LF+F P LG F+ ++ +P
Sbjct: 550 IRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVP 609
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 658
I G +A + A LR+ I PY LRR+K +V +A L+KK E ++
Sbjct: 610 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV--------NAHLTKKTEHVL 661
Query: 659 WLRLTSCQRQLYEAFLNSEIVLSAFDGS--PLAALTILKKICDHPLLLTK 706
+ LT QR Y AFL S V FDG+ L + +++KIC+HP LL +
Sbjct: 662 FCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLER 711
Score = 233 (87.1 bits), Expect = 4.9e-53, Sum P(2) = 4.9e-53
Identities = 48/116 (41%), Positives = 70/116 (60%)
Query: 347 DGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRW 406
DG+ + S LDD+ DD+ + S+ L G + +P I LF +QR G++W
Sbjct: 340 DGRRILTTSSCEEEELDDF-DDADDNERSSVQLEGGLN---IPECIFRKLFDYQRVGVQW 395
Query: 407 LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 462
LW LHCQ GGI+GD+MGLGKT+Q+ FL L S++ K ++++ P TLL W +E
Sbjct: 396 LWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRRE 451
Score = 48 (22.0 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 29/110 (26%), Positives = 47/110 (42%)
Query: 264 ESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE 323
ES+L G G +L + R+ KK + Q + E +H G+ + S G
Sbjct: 98 ESDLQGLHSGSALQHALATD---RLRSLKKR-KIQLEKELTGLH-GQ--SASSSADHGNL 150
Query: 324 EYDDEDDCVIVSGKLV-VNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLE 372
D + + KL + +P RRDGK K +V+ +D D+V +
Sbjct: 151 LRDLVKEKPSLKRKLKEIRKPSRRDGKKVK-----VVSFREDTDFDAVFD 195
Score = 44 (20.5 bits), Expect = 2.1e-43, Sum P(3) = 2.1e-43
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 889 KQIFKGGLFKTATEHKEQIRYF 910
KQ+FK L + AT K+Q R F
Sbjct: 1157 KQLFKNLLKEIATLEKDQNRSF 1178
Score = 37 (18.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 459 WIKELTAVGLSAKIREYFGTCVKTR 483
W G + +R FG+ V +R
Sbjct: 1029 WTGRSGCAGAPSSVRRRFGSTVNSR 1053
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 340 (124.7 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 83 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 142
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 143 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 196
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 197 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 250
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 251 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 308
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 309 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 360
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 361 GKGGTKTLMNTIMQLRKICNHPYM 384
Score = 299 (110.3 bits), Expect = 7.6e-53, Sum P(2) = 7.6e-53
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 417 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 476
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 477 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 536
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 537 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 581
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 353 (129.3 bits), Expect = 9.0e-53, Sum P(2) = 9.0e-53
Identities = 105/325 (32%), Positives = 166/325 (51%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL+W+ SL GIL D+MGLGKT+Q L L + I LV+
Sbjct: 777 VGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVI 836
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + +++W E S K Y GT + + + + ++LTT++ V + K
Sbjct: 837 VPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVIKD-KG 895
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE-IPSAHRIIISGTPIQNN 569
L G I W +MI+DEGH +KN +++ +++L + S +R+I++GTP+QNN
Sbjct: 896 LLGR--IK---------WVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNN 944
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L E+ + V + L + ++
Sbjct: 945 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETL--LVIRRLHKVLR 1002
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP 687
P+ LRRLK +V E D L K E +V + ++ Q +LY+ L ++ + +
Sbjct: 1003 PFLLRRLKKDV--EKD------LPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANG 1054
Query: 688 LAALTI---------LKKICDHPLL 703
+TI LKKIC+HP +
Sbjct: 1055 SVPVTIKNANNQIMQLKKICNHPFV 1079
Score = 292 (107.8 bits), Expect = 9.0e-53, Sum P(2) = 9.0e-53
Identities = 63/149 (42%), Positives = 95/149 (63%)
Query: 746 EQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
E +D I +++ LLDK++P+ GH VLIF Q +++N++++ + +G K++R+DG
Sbjct: 1092 ETNDQI-WRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDG 1150
Query: 802 TTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
TKA DR ++ F D FLL+++ GGLGL L AD VI+ D WNP D Q+ D
Sbjct: 1151 GTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQD 1210
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
RA+RIGQK +V + RL+T +VEE I +
Sbjct: 1211 RAHRIGQKNEVRILRLITENSVEEMILER 1239
Score = 39 (18.8 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 783 NLIQESIGSKGYKFLRIDG 801
N ++E I + +K L IDG
Sbjct: 1230 NSVEEMILERAHKKLEIDG 1248
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 353 (129.3 bits), Expect = 9.0e-53, Sum P(2) = 9.0e-53
Identities = 105/325 (32%), Positives = 166/325 (51%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL+W+ SL GIL D+MGLGKT+Q L L + I LV+
Sbjct: 777 VGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVI 836
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + +++W E S K Y GT + + + + ++LTT++ V + K
Sbjct: 837 VPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTFEYVIKD-KG 895
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE-IPSAHRIIISGTPIQNN 569
L G I W +MI+DEGH +KN +++ +++L + S +R+I++GTP+QNN
Sbjct: 896 LLGR--IK---------WVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNN 944
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L E+ + V + L + ++
Sbjct: 945 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETL--LVIRRLHKVLR 1002
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP 687
P+ LRRLK +V E D L K E +V + ++ Q +LY+ L ++ + +
Sbjct: 1003 PFLLRRLKKDV--EKD------LPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANG 1054
Query: 688 LAALTI---------LKKICDHPLL 703
+TI LKKIC+HP +
Sbjct: 1055 SVPVTIKNANNQIMQLKKICNHPFV 1079
Score = 292 (107.8 bits), Expect = 9.0e-53, Sum P(2) = 9.0e-53
Identities = 63/149 (42%), Positives = 95/149 (63%)
Query: 746 EQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
E +D I +++ LLDK++P+ GH VLIF Q +++N++++ + +G K++R+DG
Sbjct: 1092 ETNDQI-WRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDG 1150
Query: 802 TTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
TKA DR ++ F D FLL+++ GGLGL L AD VI+ D WNP D Q+ D
Sbjct: 1151 GTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQD 1210
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
RA+RIGQK +V + RL+T +VEE I +
Sbjct: 1211 RAHRIGQKNEVRILRLITENSVEEMILER 1239
Score = 39 (18.8 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 783 NLIQESIGSKGYKFLRIDG 801
N ++E I + +K L IDG
Sbjct: 1230 NSVEEMILERAHKKLEIDG 1248
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 332 (121.9 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 101/330 (30%), Positives = 167/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 522 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 581
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDKG----VLLTTYDIVRNNSKS 510
+W +E + K+ Y+G R++ Q L + V++T+Y +V + K
Sbjct: 582 NWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVVQDVKY 641
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ ++ R K LL+ +R++++GTPIQN +
Sbjct: 642 FQRVK------------WQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTM 689
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 690 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 744
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++ + +LTS QR LY+A N E +L + GS
Sbjct: 745 LRRIKKDVENE--------LSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSA 796
Query: 688 LAA-------LTIL---KKICDHPLLLTKR 707
A + ++ +K+C+HP L ++
Sbjct: 797 QQAHSTTSSLMNLVMQFRKVCNHPDLFERQ 826
Score = 317 (116.6 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 71/184 (38%), Positives = 114/184 (61%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +
Sbjct: 1131 SGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1190
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V DFQ +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V
Sbjct: 1191 VADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1250
Query: 872 VVYRLMTCGTVEEKIYRK---------QIFKGGLFKTAT-EHKEQIRYF-SQQDLRELLS 920
VYRL+ GT+EE+I ++ + GG FK T + KE + ++L + L
Sbjct: 1251 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLR 1310
Query: 921 LPKQ 924
L ++
Sbjct: 1311 LRQE 1314
Score = 51 (23.0 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIG--SAV 618
++G +Q + + +L+NF L KW K IL +D D + +
Sbjct: 106 LNGAVLQEHKADKASLYNFS--RLKKSRKWLKG-----ILLSDDTTDSDSDSDDSDFTMT 158
Query: 619 AKELRERIQPYFLRRLKNEVFHED 642
+EL++ ++ + RL FH D
Sbjct: 159 REELQDMLRLHKFTRLHQSKFHSD 182
Score = 47 (21.6 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 14/60 (23%), Positives = 34/60 (56%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHL-----SRVHETKKHHQRQ 298
LK++ +W+ L+S ++ +S+ D ++ +++ E + L +R+H++K H R+
Sbjct: 127 LKKSR-KWLKGILLSD-DTTDSDSDSDDSDFTMTREELQDMLRLHKFTRLHQSKFHSDRE 184
Score = 47 (21.6 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 715 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 754
Score = 45 (20.9 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 37 DEEKPQKVKIEGR-RRLCKVSSRDV 60
+EEK +VK GR +LC +S RD+
Sbjct: 935 EEEKMSEVKGRGRLEKLC-LSHRDL 958
Score = 40 (19.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 136 RDILNDLSARLEILS 150
+D+ N+LS ++EIL+
Sbjct: 750 KDVENELSDKIEILT 764
Score = 39 (18.8 bits), Expect = 7.4e-52, Sum P(3) = 7.4e-52
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 231 ADEEQETENVGIGLKRNEPRW-VDNNLVSAR-ESFESNLDGEEDGGSLSEVEGDEH 284
+D+ + G L + P V + +S E+ +S DGE + G+L+ EH
Sbjct: 59 SDDSDDGLGEGSSLASSNPLLAVKKDHISPEDETKDSCRDGETECGTLNGAVLQEH 114
Score = 37 (18.1 bits), Expect = 5.6e-22, Sum P(3) = 5.6e-22
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 603 PHDRKVIRKFWS 614
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 327 (120.2 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 101/330 (30%), Positives = 165/330 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +G+ WL +L+ QG GIL D+MGLGKT+Q LA L I L+++P + L+
Sbjct: 526 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 585
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVL--QDKG--VLLTTYDIVRNNSKS 510
+W +E K+ Y+G R++ Q L QD V++T+Y +V + K
Sbjct: 586 NWHQEFARFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 645
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
+ W YM+LDE +K+ S+ R K LL+ +R++++GTPIQN +
Sbjct: 646 FQRVK------------WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTM 693
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL +F P L ++ F E + I + HA + + I L ++P+
Sbjct: 694 AELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHA-ENKSAIDENQLSRLHMILKPFM 748
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS---EIVLSAFDGSP 687
LRR+K +V +E LS K E++++ + TS Q+ LY+A N + +L + G+
Sbjct: 749 LRRIKKDVENE--------LSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSMGTT 800
Query: 688 LAALTI----------LKKICDHPLLLTKR 707
A T +K+C+HP L ++
Sbjct: 801 QQAQTTTSSLMNLVMQFRKVCNHPELFERQ 830
Score = 315 (115.9 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 66/165 (40%), Positives = 106/165 (64%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L +GH VLI+SQ +M++L++E + + + ++R+DG++K S+R +
Sbjct: 1108 SGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1167
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V DFQ + +FLL+++ GGLG+ LT AD VI D WNP+ D Q++DRA+R+GQ K V
Sbjct: 1168 VADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1227
Query: 872 VVYRLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQI 907
VYRL+ GT+EE+I ++ + GG FK T +++
Sbjct: 1228 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEV 1272
Score = 63 (27.2 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSR--VHETKKHHQRQKKN 301
LK++ +W+ + L+S +S +++ +EDG E E + LSR +H + H+ +K +
Sbjct: 122 LKKSR-KWLKSILLSD-DSSDTDSPSDEDG----EDEEEFSLSREELHNMLRLHKYKKLH 175
Query: 302 EPKRVHDGERFNGQSFVSGGREEYDD--EDDCVIVSGKLVVNRPDRR-DGKLNK 352
+ K D E Q + +G YD E ++ K + +++ GKL K
Sbjct: 176 QSKYSKDKELQQYQYYSAGLLSTYDPYYEQQRHLLGPKKKKFKEEKKLKGKLKK 229
Score = 47 (21.6 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 24 SRD-HDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S+D H E++S IDE + ++ + + + + +DV+N
Sbjct: 719 SKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVEN 758
Score = 46 (21.3 bits), Expect = 6.4e-51, Sum P(4) = 6.4e-51
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHD 308
DE LS E+ +HH Q K K HD
Sbjct: 237 DEDLSS-EESPEHHHHQTKVFAKFSHD 262
Score = 39 (18.8 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 50 RRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDG 105
R+ + +R++ + E+ +DD P D ++ + +A++ ES V + G
Sbjct: 40 RQTSAIFNRNISSDESEDGLDDNPLLPQSGDALMQVKEEPPNALLG-ESSGVGNSG 94
Score = 39 (18.8 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 136 RDILNDLSARLEIL 149
+D+ N+LS ++EIL
Sbjct: 754 KDVENELSDKIEIL 767
Score = 37 (18.1 bits), Expect = 9.5e-23, Sum P(4) = 9.5e-23
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 398 PHQREGLRWLWS 409
PH R+ +R WS
Sbjct: 607 PHDRKVIRKFWS 618
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 321 (118.1 bits), Expect = 1.2e-52, Sum P(4) = 1.2e-52
Identities = 84/286 (29%), Positives = 143/286 (50%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + + LV P
Sbjct: 198 GGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGP 257
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLR 512
+ L +W+ E Y GT + R+ ++++ + KG L ++ + ++R
Sbjct: 258 LSTLPNWMAEFKRFTPEIPTMLYHGT-QQERRILVKHIHERKGTLQIHPVVITSFEIAMR 316
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
D + W Y+I+DEGH IKN + + L + ++++++GTP+QNNL E
Sbjct: 317 ------DRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSE 370
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
LW+L NF P++ D K F+ +++ L + + +E+ V L + + P+ LR
Sbjct: 371 LWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE--QNVLHMLHQILTPFLLR 428
Query: 633 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
RLK++V E + K E++V+ L+ Q Y A +N I
Sbjct: 429 RLKSDVALE--------VPPKREVVVYAPLSKKQEIFYTAIVNRTI 466
Score = 307 (113.1 bits), Expect = 1.2e-52, Sum P(4) = 1.2e-52
Identities = 72/207 (34%), Positives = 116/207 (56%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
+LD+++PE GH VL+FSQ +ML+++ + + + F R+DG+ S+R K ++ F
Sbjct: 581 ILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFN 640
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
IFL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ + VVVYRL
Sbjct: 641 TDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRL 700
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL--PKQGFDVSLTQQQ 934
+T T+++KI + K L K HK + Q L + + PK+ ++ ++
Sbjct: 701 VTANTIDQKIVERAAAKRKLEKLII-HKNHFKG-GQSGLNQSKNFLDPKELMELLKSRDY 758
Query: 935 LHEEHGDQHNM--DESLEAHIQFLDTL 959
E G + + D+ LE + D L
Sbjct: 759 EREVKGSREKVISDKDLELLLDRSDLL 785
Score = 55 (24.4 bits), Expect = 1.2e-52, Sum P(4) = 1.2e-52
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 38 EEKPQKVKIEGRRRLCKVSS--RDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVN 95
EE+ +K K+E ++ KV+ +D +E AV+ + D + S + SK V
Sbjct: 71 EEQKKKEKLERKKESLKVTKDKNSIDASEENAVIKKKRGREDESYNISEVMSKEEILSVA 130
Query: 96 IESRAVIDDGPKFSDITVFD 115
+++ +D S++ V D
Sbjct: 131 KKNKKENEDESSSSNMCVED 150
Score = 43 (20.2 bits), Expect = 1.2e-52, Sum P(4) = 1.2e-52
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP L+
Sbjct: 542 MMLLRKCCNHPYLI 555
Score = 39 (18.8 bits), Expect = 5.7e-51, Sum P(4) = 5.7e-51
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 130 KGGNEIRDI-LNDLSARLEILSIDKRRVPKTVDPEDDFSRLV----KNGDTGQGSKGNLP 184
K G E ++++ ++ EILS+ K+ + D + V KN D+ K L
Sbjct: 107 KRGREDESYNISEVMSKEEILSVAKKNKKENEDESSSSNMCVEDLQKNKDSNSKIKDRLS 166
Query: 185 E 185
+
Sbjct: 167 Q 167
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 319 (117.4 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 71/224 (31%), Positives = 125/224 (55%)
Query: 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKD---DFQEQ 747
L +L+K+ +H LL + ++++ + +++ D +K F+
Sbjct: 387 LAVLQKVANHVALLQSASTSKQ---QETLIK----RICDQVFSKFPDFVQKSKDASFETL 439
Query: 748 HD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
D S K+ + LL+ +L+FS + K+L+++Q+ + G+ + R+DG+TK+
Sbjct: 440 SDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSE 499
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
+R+KIV +F I L+++ GG+GL A+ V++ DP WNP+ D Q++DRAYRIG
Sbjct: 500 ERIKIVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 559
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
Q +DV V+RL++ GTVEE +Y +Q++K L + RYF
Sbjct: 560 QCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 603
Score = 316 (116.3 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 101/319 (31%), Positives = 154/319 (48%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----- 442
+P I L +QREG ++L++ QGKG ILGDDMGLGKT+Q+ FLA + H +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 112
Query: 443 --------LI-------------KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVK 481
L+ K L+VAP ++L +W EL G ++ G
Sbjct: 113 IENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYF-RVTILHGN--- 168
Query: 482 TRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
+ EL V Q K + LTTY+ +R DE + W +I+DE H IK
Sbjct: 169 KKDNELVRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAHKIK 216
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
NP + + + + RI ++GT +QNN+KELW + ++ P LLG FK+++ P+
Sbjct: 217 NPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVE 276
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
G A RE G + L + + +FLRR K + +D L KK + +V+
Sbjct: 277 HGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLI--KDQ------LPKKEDRMVYC 328
Query: 661 RLTSCQRQLYEAFLNSEIV 679
LT Q+ +Y+ L ++ V
Sbjct: 329 SLTDFQKAVYQTVLETKDV 347
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 342 (125.4 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 103/347 (29%), Positives = 172/347 (49%)
Query: 367 DDSVLEDEG-SITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGL 425
D+ +DE T+ +Y+ GK+ +Q +GL WL SL+ GIL D+MGL
Sbjct: 113 DEEHQDDEDHQHTVMTESPSYIKEGKLRE----YQIQGLNWLISLYENRLSGILADEMGL 168
Query: 426 GKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 484
GKT+Q FL L + + I +V+ PK+ L +W +E + G +
Sbjct: 169 GKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRAS 228
Query: 485 YELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543
+ K VL+T+++++ +L+ F W+Y+++DE H IKN
Sbjct: 229 IIKDQLYTAKFDVLITSFEMILREKSALQ--KFR----------WEYIVVDEAHRIKNED 276
Query: 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 603
+ +K + S +R++I+GTP+QNNL ELWAL NF P++ GD+ F E ++
Sbjct: 277 SSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEEL 336
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
D+ ++++R AV+ EL + + P+ LRR+K +V +L K E V++ +T
Sbjct: 337 DEE--EKQRRQDKAVS-ELHQLLSPFLLRRVKADV--------EKSLLPKIETNVYIGMT 385
Query: 664 SCQRQLYEAFLNSEI-----VLSAFDGSP--LAALTILKKICDHPLL 703
Q + Y+ L +I V+ +G L + L+K C+HP L
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYL 432
Score = 294 (108.6 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 59/139 (42%), Positives = 91/139 (65%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L K EG VLIFSQ ++L+++++ + Y++ RIDG+T DR++
Sbjct: 452 SGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEA 511
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++++ D IFLLT++ GGLG+ LT AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 512 IDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQ 571
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V V+R +T +EEK+ +
Sbjct: 572 VKVFRFVTEKAIEEKVLER 590
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 342 (125.4 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 103/347 (29%), Positives = 172/347 (49%)
Query: 367 DDSVLEDEG-SITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGL 425
D+ +DE T+ +Y+ GK+ +Q +GL WL SL+ GIL D+MGL
Sbjct: 113 DEEHQDDEDHQHTVMTESPSYIKEGKLRE----YQIQGLNWLISLYENRLSGILADEMGL 168
Query: 426 GKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ 484
GKT+Q FL L + + I +V+ PK+ L +W +E + G +
Sbjct: 169 GKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRAS 228
Query: 485 YELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543
+ K VL+T+++++ +L+ F W+Y+++DE H IKN
Sbjct: 229 IIKDQLYTAKFDVLITSFEMILREKSALQ--KFR----------WEYIVVDEAHRIKNED 276
Query: 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 603
+ +K + S +R++I+GTP+QNNL ELWAL NF P++ GD+ F E ++
Sbjct: 277 SSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEEL 336
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
D+ ++++R AV+ EL + + P+ LRR+K +V +L K E V++ +T
Sbjct: 337 DEE--EKQRRQDKAVS-ELHQLLSPFLLRRVKADV--------EKSLLPKIETNVYIGMT 385
Query: 664 SCQRQLYEAFLNSEI-----VLSAFDGSP--LAALTILKKICDHPLL 703
Q + Y+ L +I V+ +G L + L+K C+HP L
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYL 432
Score = 294 (108.6 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 59/139 (42%), Positives = 91/139 (65%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L K EG VLIFSQ ++L+++++ + Y++ RIDG+T DR++
Sbjct: 452 SGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEA 511
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++++ D IFLLT++ GGLG+ LT AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 512 IDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQ 571
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V V+R +T +EEK+ +
Sbjct: 572 VKVFRFVTEKAIEEKVLER 590
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 322 (118.4 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 750 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV 809
N S K+ +++ L + I EG +LIFSQ ML+LI++ + G ++++ G+T + R
Sbjct: 962 NQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGST--TKRQ 1019
Query: 810 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++V+ FQ G+V P+FL++ + GG+GL LT AD VI DP WNP+ +NQ+ DRAYRIGQ K
Sbjct: 1020 EVVDKFQRGEV-PVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNK 1078
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLP 922
V VY+L+ ++EEKI + Q K L K +E + D+ + L P
Sbjct: 1079 PVFVYKLIIENSIEEKIQKIQQNKAELAKALLSEEVSDNKLSLTDDILDSLLTP 1132
Score = 320 (117.7 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 99/339 (29%), Positives = 167/339 (49%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSR 442
+T +P + L +Q +GL WL L GIL DDMGLGKT+Q + L R
Sbjct: 650 TTIPVPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAHLLIEKQQGR 709
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-LQYVLQDKG---VLL 498
L K L+VAP +++ +W E+ + G + Q+ L+ V + +++
Sbjct: 710 LTKPILIVAPTSVIFNWANEIDKFTPQLSYQVLHGN-KRHEQFGCLEGVENGENQVDIII 768
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
T+Y ++ +K L A D + Y++LDE H IKN T+ ++ L + + H+
Sbjct: 769 TSYALI---TKDL---------AHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHK 816
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
+ ++GTP++N+L E WA FNF P LG + F + + PI +KH K++
Sbjct: 817 LCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI----EKHGELERKQL---- 868
Query: 619 AKELRERIQPYFLRRLKNEVFHE----DDVTSSATLS-KKNEMIVWLRLTSCQRQLYEAF 673
L +RI+P+ LRR K+++ E ++ + + K+ E+ +RL R L +
Sbjct: 869 ---LNQRIKPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSR-LKDII 924
Query: 674 LNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDV 712
+ + S + L AL L+++C+HP LL A+ V
Sbjct: 925 ADKGLKRSQIE--VLDALLKLRQVCNHPKLLKLEGAKKV 961
Score = 44 (20.5 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 206 VTKDNVGGVVESVADEYEESKGDDVADEEQETENV 240
VTK ++ +S AD ES ++E E ENV
Sbjct: 381 VTKLSIDSDAQSDADSNIESGAYSNIEDEVERENV 415
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 322 (118.4 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 750 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV 809
N S K+ +++ L + I EG +LIFSQ ML+LI++ + G ++++ G+T + R
Sbjct: 962 NQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGST--TKRQ 1019
Query: 810 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++V+ FQ G+V P+FL++ + GG+GL LT AD VI DP WNP+ +NQ+ DRAYRIGQ K
Sbjct: 1020 EVVDKFQRGEV-PVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNK 1078
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLP 922
V VY+L+ ++EEKI + Q K L K +E + D+ + L P
Sbjct: 1079 PVFVYKLIIENSIEEKIQKIQQNKAELAKALLSEEVSDNKLSLTDDILDSLLTP 1132
Score = 320 (117.7 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 99/339 (29%), Positives = 167/339 (49%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSR 442
+T +P + L +Q +GL WL L GIL DDMGLGKT+Q + L R
Sbjct: 650 TTIPVPEGLNATLRTYQHQGLNWLQFLREYQLNGILADDMGLGKTIQTLAHLLIEKQQGR 709
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-LQYVLQDKG---VLL 498
L K L+VAP +++ +W E+ + G + Q+ L+ V + +++
Sbjct: 710 LTKPILIVAPTSVIFNWANEIDKFTPQLSYQVLHGN-KRHEQFGCLEGVENGENQVDIII 768
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
T+Y ++ +K L A D + Y++LDE H IKN T+ ++ L + + H+
Sbjct: 769 TSYALI---TKDL---------AHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHK 816
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
+ ++GTP++N+L E WA FNF P LG + F + + PI +KH K++
Sbjct: 817 LCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI----EKHGELERKQL---- 868
Query: 619 AKELRERIQPYFLRRLKNEVFHE----DDVTSSATLS-KKNEMIVWLRLTSCQRQLYEAF 673
L +RI+P+ LRR K+++ E ++ + + K+ E+ +RL R L +
Sbjct: 869 ---LNQRIKPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSR-LKDII 924
Query: 674 LNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDV 712
+ + S + L AL L+++C+HP LL A+ V
Sbjct: 925 ADKGLKRSQIE--VLDALLKLRQVCNHPKLLKLEGAKKV 961
Score = 44 (20.5 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 206 VTKDNVGGVVESVADEYEESKGDDVADEEQETENV 240
VTK ++ +S AD ES ++E E ENV
Sbjct: 381 VTKLSIDSDAQSDADSNIESGAYSNIEDEVERENV 415
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 354 (129.7 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 131/463 (28%), Positives = 218/463 (47%)
Query: 257 VSARESFESNLDGEEDG-GSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQ 315
V A E + + + D SE E DEH S ET +++E + D + Q
Sbjct: 483 VEAEEPPQEDSSSQSDSVEDRSEDEEDEH-SEEEETSGS-SASEESESEESEDAQ---SQ 537
Query: 316 SFVSGGREEYDDEDDCV--IVSGKLVVNRPDRRDGKLNKSAHS-GLVNVLDDYSDDSV-L 371
S EE +D+D V +++ + D G + G + D + + L
Sbjct: 538 SQAD---EEEEDDDFGVEYLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESL 594
Query: 372 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQI 431
+ +G TL+ + +P + L +Q GL WL +++ + GIL D+MGLGKT+Q
Sbjct: 595 QPKG-YTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQT 653
Query: 432 CGFLAGLFHSR-LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV 490
LA L + L++ P +++ +W EL S KI Y+G K R+ + Q
Sbjct: 654 ISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGA-QKERKLKRQGW 712
Query: 491 LQDKG--VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 548
+ V +T+Y +V + ++ R + W Y+ILDE IKN +QR +
Sbjct: 713 TKPNAFHVCITSYKLVLQDHQAFRRKN------------WRYLILDEAQNIKNFKSQRWQ 760
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHAL 608
SLL S R++++GTP+QN+L ELW+L +F P + ++ FKE + P L G +
Sbjct: 761 SLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTG----MI 815
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 668
+ + + K L + ++P+ LRR+K +V + + KK E ++ RL+ QR
Sbjct: 816 EGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQ--------MPKKYEHVIRCRLSKRQRC 867
Query: 669 LYEAFL----NSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707
LY+ F+ E + + S + L L+K+C+HP L R
Sbjct: 868 LYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPR 910
Score = 308 (113.5 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 67/170 (39%), Positives = 102/170 (60%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL +L EGH VLIF+Q +ML+++++ + G+ +LR+DG+T+ R ++
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F F+L+++ GG+G+ LT AD V+ D WNP+ D Q+ DR +RIGQ +DV +
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2163
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLP 922
YRL++ TVEE I +K K L A E YF QQ +REL +P
Sbjct: 2164 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMP 2213
Score = 58 (25.5 bits), Expect = 3.1e-21, Sum P(3) = 3.1e-21
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIG--LKRNE 248
ES ++E E+++ ADEE+E ++ G+ L R+E
Sbjct: 525 ESESEESEDAQSQSQADEEEEDDDFGVEYLLARDE 559
Score = 43 (20.2 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 28/116 (24%), Positives = 45/116 (38%)
Query: 216 ESVADEYE-ESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG 274
E A+E E E + D +A EEQ V ++ +E +S E + G
Sbjct: 402 EFTANEEEAEDEEDTIAAEEQLEGEVDHAMELSE--LAREGELSMEELLQQYAGAYAPGS 459
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
SE E ++ + + + EP + E + QS R E D+ED+
Sbjct: 460 GSSEDEDEDEVDANSSDCEPEGPVEAEEPPQ----EDSSSQSDSVEDRSE-DEEDE 510
Score = 39 (18.8 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRD 26
DD++ ++VE + ND R+
Sbjct: 298 DDEETIEVEEQQEGNDAEAQRRE 320
Score = 38 (18.4 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 209 DNVGGVVESVADEY--EESKGDDVADEEQETE 238
D+V E DE+ EE A EE E+E
Sbjct: 498 DSVEDRSEDEEDEHSEEEETSGSSASEESESE 529
Score = 37 (18.1 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 17/71 (23%), Positives = 29/71 (40%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDD 327
DG E+G +E +V E K + + H E + + F + EE +D
Sbjct: 363 DGPEEGA-------EEEPPQVLEIKPPPSAVTQRNKQPWHPDE--DDEEFTAN-EEEAED 412
Query: 328 EDDCVIVSGKL 338
E+D + +L
Sbjct: 413 EEDTIAAEEQL 423
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 323 (118.8 bits), Expect = 4.6e-52, Sum P(3) = 4.6e-52
Identities = 117/439 (26%), Positives = 191/439 (43%)
Query: 260 RESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVS 319
+ES +S ++ D S+S + E + Q P+ G S +
Sbjct: 690 QES-DSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFT 748
Query: 320 GGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVN---VLDDYSDDSVLEDEGS 376
G D+EDD I S N + D +N S VN +D + S ED+ +
Sbjct: 749 NGTIVSDEEDDVSISS-----NFENESDESMNSSDRELEVNGNGKIDKIA--STDEDDSN 801
Query: 377 ITL-SGPR-STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGF 434
+ + +G + +P + L P+Q++GL WL SL+ GIL D+MGLGKT+Q
Sbjct: 802 VEIVNGSKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISL 861
Query: 435 LAGLF--HSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492
LA L H + L++ P +++ +W E K+ Y+G+ + Q +
Sbjct: 862 LAYLACEHHKWGPH-LIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKP 920
Query: 493 DK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551
D V +T+Y +V + +S + W YMILDE H IKN + R ++LL
Sbjct: 921 DAFHVCITSYQLVVQDQQSFKRRR------------WTYMILDEAHNIKNFRSTRWRALL 968
Query: 552 EIPSAHRIIISGTPIQNNLKELWALFNFCCPEL------------LGD-NKWFKEKYE-- 596
+ +R++++GTP+QNNL ELW+L F P L D +WF +
Sbjct: 969 NFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRI 1028
Query: 597 LPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEM 656
L + +D +R + +E R + + L+ + + K E
Sbjct: 1029 LEQTSAGNSDLIDENERTTQKMDEETRNTVARLH-QVLRPYLLRRLKKDVEKQMPGKYEH 1087
Query: 657 IVWLRLTSCQRQLYEAFLN 675
IV+ RL+ QR LY+ F++
Sbjct: 1088 IVYCRLSKRQRFLYDDFMS 1106
Score = 317 (116.6 bits), Expect = 4.6e-52, Sum P(3) = 4.6e-52
Identities = 69/194 (35%), Positives = 111/194 (57%)
Query: 738 VAEKDDFQEQHDNISC-KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKF 796
+A D Q+D C K+ + +LL +L +GH LIF+Q K+L+++++ + GY++
Sbjct: 1353 IAFPDKTLLQYD---CGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRY 1409
Query: 797 LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
+R+DG TK DR + F P+F+L+++ GGLG+ LT AD VI D WNP+ D
Sbjct: 1410 MRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDK 1469
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDL 915
Q DR +RIGQ +DV +YR ++ T+E I +K K L + E YF + +
Sbjct: 1470 QCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSV 1529
Query: 916 RELLSLPKQGFDVS 929
R+L+S G +++
Sbjct: 1530 RDLVSDSNIGKEIT 1543
Score = 57 (25.1 bits), Expect = 6.1e-23, Sum P(3) = 6.1e-23
Identities = 69/357 (19%), Positives = 122/357 (34%)
Query: 35 VIDEEKPQKVK-IEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAM 93
+I EK +++K I+GR+ L ++ E + EP +D +S +
Sbjct: 507 IIQNEKEEELKKIKGRQHLSEMLEHSTQLLEAQLTSSREPTVEAESDDNSTTFDDNTNDS 566
Query: 94 VNIESRAVIDDGPKFSDITVFDSPP---KAKTVSENDNYKGGNEIRDILNDLSARLEILS 150
N S ++ + + + K+ END E+R DL +E LS
Sbjct: 567 DNFSSSEEEENEEDNTQQQINGNKKYDVNGKSNDENDMSLSVEELRKKYADLETSVEPLS 626
Query: 151 I----DKRRVPKTV--DPE--DDFSRLVKNGDTGQGSKGNLPEYXXXXXXXXXXXXXXXX 202
DK R +T D E DD V G + ++
Sbjct: 627 SNVTSDKERESETSSEDAESSDDDDTDVTRGLASLYQNDEVADFATTTFEYSAEEKKLIE 686
Query: 203 XXGVTKDN-VGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARE 261
D+ + +++S D + ++E + PR + +
Sbjct: 687 DLNQESDSRMNSLLDS--DSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLA 744
Query: 262 SFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG 321
S +N G +S+ E D +S E + + V+ NG+
Sbjct: 745 SLFTN------GTIVSDEEDDVSISSNFENESDESMNSSDRELEVNG----NGKIDKIAS 794
Query: 322 REEYDDEDDCVIVSGKLV--VNRPDRRDGKLNKSAHSGLVNVLDDYSDDS--VLEDE 374
+E D+ + IV+G V V P G L GL + Y++++ +L DE
Sbjct: 795 TDE--DDSNVEIVNGSKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADE 849
Score = 51 (23.0 bits), Expect = 4.6e-52, Sum P(3) = 4.6e-52
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 3 LDDKKPVK--VEAEVRTNDCSVLSRDHDHV--ES--RSVIDEEKP-QKVKIEGRRRLCKV 55
LDDK ++ V A + + S++++ D V ES +++ +EK K+K + K
Sbjct: 144 LDDKFSIRQNVLASSKMLEESLVNKTRDEVKIESTFKAIQSQEKAGSKLKTPSQTSNAKT 203
Query: 56 SSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIES 98
+ R +T + ++ + D D ++ S++V IES
Sbjct: 204 NIRKSGSTTPKRGNENGSRKQALEDQDEIIELSDDSSVVEIES 246
Score = 46 (21.3 bits), Expect = 2.4e-22, Sum P(4) = 2.4e-22
Identities = 35/170 (20%), Positives = 64/170 (37%)
Query: 224 ESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDE 283
E++ DD + + N +E +N + ++ N + +G S E D
Sbjct: 549 EAESDDNSTTFDDNTNDSDNFSSSEEE--ENEEDNTQQQINGNKKYDVNGKSNDE--NDM 604
Query: 284 HLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRP 343
LS KK+ + EP + +S S E D+DD + G + +
Sbjct: 605 SLSVEELRKKYADLETSVEPLSSNVTSDKERESETSSEDAESSDDDDTDVTRGLASLYQN 664
Query: 344 DR-RDGKLNKSAHSG----LVNVLDDYSD---DSVLEDEGSITLSGPRST 385
D D +S L+ L+ SD +S+L+ + ++S S+
Sbjct: 665 DEVADFATTTFEYSAEEKKLIEDLNQESDSRMNSLLDSDSVSSISDSESS 714
Score = 41 (19.5 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 29/112 (25%), Positives = 47/112 (41%)
Query: 62 NTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNI---ESRAVIDD-----GPKFSDITV 113
NTENR ++ P +++ + S L S+ VN E A +DD G + I
Sbjct: 971 NTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRILE 1030
Query: 114 FDSPPKAKTVSENDN--YKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPE 163
S + + EN+ K E R+ + L L + RR+ K V+ +
Sbjct: 1031 QTSAGNSDLIDENERTTQKMDEETRNTVARLHQVLRPYLL--RRLKKDVEKQ 1080
Score = 37 (18.1 bits), Expect = 6.1e-23, Sum P(3) = 6.1e-23
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 439 FHSRLIKRALVVAPKTLLSH 458
FH +K ++ KTLL +
Sbjct: 1344 FHKAQVKLSIAFPDKTLLQY 1363
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 364 (133.2 bits), Expect = 5.8e-52, Sum P(4) = 5.8e-52
Identities = 112/396 (28%), Positives = 193/396 (48%)
Query: 323 EEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSV-----LEDEGSI 377
EE D+++D + K ++ D G + +G DD +D+ L+ +G+
Sbjct: 841 EEQDEQEDGL----KSLMADADATSGAAGSGSTAGASGNKDDMLNDAAALAESLQPKGN- 895
Query: 378 TLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG 437
TLS +P + + L +Q GL WL +++ + GIL D+MGLGKT+Q LA
Sbjct: 896 TLSSTNVVTPVPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAH 955
Query: 438 LFHSR-LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-G 495
L ++ L+V P +++ +W E KI Y+G+ + + + + +
Sbjct: 956 LACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFH 1015
Query: 496 VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPS 555
V +T+Y +V + +S R W Y+ILDE IKN +QR + LL +
Sbjct: 1016 VCITSYKLVVQDQQSFRRKK------------WKYLILDEAQNIKNFKSQRWQLLLNFST 1063
Query: 556 AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIG 615
R++++GTP+QN+L ELW+L +F P + ++ FKE + P + G ++
Sbjct: 1064 ERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNP-MTG----MIEGNMEYN 1118
Query: 616 SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN 675
+ L + I+P+ LRRLK EV + + KK E ++ RL++ QR LYE F++
Sbjct: 1119 ETLITRLHKVIRPFLLRRLKKEVEKQ--------MPKKYEHVITCRLSNRQRYLYEDFMS 1170
Query: 676 SEIVLSAFD-GSPLAALTIL---KKICDHPLLLTKR 707
G+ L+ + +L +K+C+HP + R
Sbjct: 1171 RAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFEAR 1206
Score = 288 (106.4 bits), Expect = 5.8e-52, Sum P(4) = 5.8e-52
Identities = 79/226 (34%), Positives = 126/226 (55%)
Query: 721 NPEDAALAEKLAM-H--IADVAEK--DDFQEQHDNISC-KISFILSLLDKLIPEGHNVLI 774
N D AL KLA+ H I+++ K D Q+D C K+ + LL +L GH VLI
Sbjct: 1623 NIVDQALRPKLALLHPIISEMTTKFPDPRLIQYD---CGKLQTMDRLLRQLKVNGHRVLI 1679
Query: 775 FSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGL 833
F+Q KML++++ + G+ +LR+DG+T+ R ++ F GD F+L+++ GG+
Sbjct: 1680 FTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFN-GDKRIFCFILSTRSGGV 1738
Query: 834 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
G+ LT AD VI D WNP+ D Q+ DR +RIGQ +DV +YRL++ T+E I +K K
Sbjct: 1739 GINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQK 1798
Query: 894 GGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 938
L A E YF +++L ++ + D S ++ +++
Sbjct: 1799 RMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQEKSENKD 1844
Score = 60 (26.2 bits), Expect = 5.8e-52, Sum P(4) = 5.8e-52
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 253 DNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKR 305
D N +S +E E +D +++ + E+E D LS V + ++ ++ PKR
Sbjct: 747 DENTISKQEEAEQEIDHKKE---IDELEADNDLS-VEQLLAKYKSEQPPSPKR 795
Score = 57 (25.1 bits), Expect = 1.2e-51, Sum P(4) = 1.2e-51
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 282 DEHLSR-VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDD 327
D+HLS V +T+K Q+ + K V D N S RE DD
Sbjct: 613 DQHLSFIVDQTEKFSQQLVEGMNKSVADTPSLNSSRLTSPKRESDDD 659
Score = 50 (22.7 bits), Expect = 6.4e-51, Sum P(4) = 6.4e-51
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 4 DDKKPV-KVE---AEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRD 59
DD++ + K E A+V+ + + L+++ + ++ +++ P +E R +L K
Sbjct: 668 DDEETIAKAEEDAADVK-EEVTALAKESE-MDFDDFLNDLPPGY--LENRDKLMKEEQSS 723
Query: 60 VDNTENRAVVDD-EPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITV 113
TE DD E + +D D SK A I+ + ID+ +D++V
Sbjct: 724 AIKTETPDDSDDSEFEAKEASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSV 778
Score = 38 (18.4 bits), Expect = 5.8e-52, Sum P(4) = 5.8e-52
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1028 SPKNEAKLKESDIKE--RIKRLSQ 1049
SP+N A +K + I+E R +++SQ
Sbjct: 2306 SPQNIAAMKANKIREKQRGQQMSQ 2329
Score = 37 (18.1 bits), Expect = 7.4e-52, Sum P(4) = 7.4e-52
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 999 SSSYLVARNVDGA-EYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIK 1045
S +Y AR E PR+ K SPK + KLK + E +K
Sbjct: 2188 SKTYRSARQCRWRYETHIQPREE--GKVVESPKKQKKLKPTLRTEYLK 2233
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 343 (125.8 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
Identities = 100/323 (30%), Positives = 162/323 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL+W+ SL+ GIL D+MGLGKT+Q + + + LV+
Sbjct: 533 VGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHIIERKRNNGPFLVI 592
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L++W E S Y G +Q + + VLLTTY+ + +
Sbjct: 593 VPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYIIKDRPI 652
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTPIQNN 569
L S I W +MI+DEGH +KN ++ + +L + S +R+I++GTP+QNN
Sbjct: 653 L---SKIK---------WTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNN 700
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P + K F E + P G D+ L E+++ V + L + ++
Sbjct: 701 LPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQL--LVIRRLHKVLR 758
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL-NSEIVLSAFDGS 686
P+ LRRLK +V E D L K E ++ R ++ Q +L + ++++V+S G
Sbjct: 759 PFLLRRLKKDV--EKD------LPDKQERVIKCRFSALQAKLNKQLATHNKMVVSDGKGG 810
Query: 687 PLAA------LTILKKICDHPLL 703
+ L L+K+C+HP +
Sbjct: 811 KVGMRGLSNMLMQLRKLCNHPFV 833
Score = 297 (109.6 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
Identities = 77/210 (36%), Positives = 120/210 (57%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ GH VL+F Q +++N++++ + +G K+LR+DG+TK+ DR ++ F
Sbjct: 860 LLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFN 919
Query: 817 EGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
D FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK +V + R
Sbjct: 920 APDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILR 979
Query: 876 LMTCGTVEEKIYRKQIFK----GGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLT 931
L+T +VEEKI + FK G + + + LR LL +G D +
Sbjct: 980 LITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETA-EGTDQAGD 1038
Query: 932 QQQLHEEHGDQHNM----DESLEAHIQFLD 957
Q ++ ++ D +N+ DE L A Q +D
Sbjct: 1039 QDEMDDD--DLNNIMARSDEEL-AVFQRMD 1065
Score = 46 (21.3 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
Identities = 21/93 (22%), Positives = 38/93 (40%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEP 303
++R E R V+ ++ ++N EE + ++ G SR+ K
Sbjct: 416 MEREEQRRVERTAKQRLQALKAN--DEE---TYLKLLGQAKDSRISHLLNQTDGFLKQLA 470
Query: 304 KRVHDGERFNGQSFVSGGREEYDDEDDCVIVSG 336
V +R + + G ++DD+DD I SG
Sbjct: 471 ASVRQQQRNQAERY--GEEHDFDDDDDEDIASG 501
Score = 45 (20.9 bits), Expect = 8.3e-52, Sum P(3) = 8.3e-52
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 293 KHHQRQKKNEPKRVHDGERFNGQSFVSGGREEY 325
+HHQ ++ E +RV + Q+ + E Y
Sbjct: 411 QHHQHMEREEQRRVERTAKQRLQALKANDEETY 443
Score = 45 (20.9 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 737 DVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776
DV EKD +Q I C+ S + + L+K + HN ++ S
Sbjct: 768 DV-EKDLPDKQERVIKCRFSALQAKLNKQLAT-HNKMVVS 805
Score = 44 (20.5 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 583 ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI--QPYFL 631
E G+ F + + I G+D+ R K AVA ++E I QP L
Sbjct: 482 ERYGEEHDFDDDDDEDIASGSDEEGEGRRKIDYYAVAHRIKEEITEQPSIL 532
Score = 37 (18.1 bits), Expect = 7.8e-20, Sum P(3) = 7.8e-20
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 632 RRLKNEVFHEDDVTSSATLSKKNEM 656
+++++E+FH D++ +A + M
Sbjct: 323 KQIQHEMFHYDNLGMTANRATHRRM 347
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 345 (126.5 bits), Expect = 7.6e-52, Sum P(3) = 7.6e-52
Identities = 112/345 (32%), Positives = 175/345 (50%)
Query: 378 TLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG 437
TL G T P + L +Q +GL WL +L+ QG GIL D+MGLGKT+Q LA
Sbjct: 655 TLLGD-ITIPQPNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAY 713
Query: 438 LFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGV 496
L + + LVV P + L +W +E+T K+ Y+G K R+ ++ D+
Sbjct: 714 LAETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNA-KDRKILRKF--WDRKS 770
Query: 497 LLTTYDIVRNNSKSLRGSSF---ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
L YD +++ + +S+ ++D A W YMILDE IK+ S+ R KSLL +
Sbjct: 771 L--RYD--KDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNL 826
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+R++++GTPIQN+++ELWAL +F P + + F + + I + HA
Sbjct: 827 TCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDI----ESHAQSNTS- 881
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
+ + L ++P+ LRR+K V E L K E+ V+ LT+ Q++LY+
Sbjct: 882 LDEQQLRRLHMILKPFMLRRIKKNVQSE--------LGDKVEIDVYCDLTTRQKKLYQQ- 932
Query: 674 LNSEIVLSAFD-----------GSPLAALTI-LKKICDHPLLLTK 706
L S+I +S D S LA L + +K+C+HP L +
Sbjct: 933 LRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVCNHPDLFER 977
Score = 295 (108.9 bits), Expect = 7.6e-52, Sum P(3) = 7.6e-52
Identities = 59/138 (42%), Positives = 90/138 (65%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K++ + LL L GH +LI+ Q +M+ + +E + K YK++R+DG+T R ++
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1294
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V +Q IF+L+++ GGLGL LT AD VI D WNP+ D+Q++DRA+RIGQ K V
Sbjct: 1295 VQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQV 1354
Query: 872 VVYRLMTCGTVEEKIYRK 889
V+RL+T T+E+KI +
Sbjct: 1355 KVFRLVTRNTIEQKILER 1372
Score = 45 (20.9 bits), Expect = 7.6e-52, Sum P(3) = 7.6e-52
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 242 IGLKRNEPRWVDNNLVSARESFES---NLDGEEDGGSLSEVEGDEHLSRVHETKKHH 295
+ LK + D ES + N +G+ +++ V+ + HLS H + + H
Sbjct: 13 VSLKESTSTATDQQQQQQAESVDHATINGNGQTSVSAVNNVQ-ENHLSEFHSSNQQH 68
Score = 44 (20.5 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 485 YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDE 535
YE Y+ ++K +L+T + NS + S SD + + M L++
Sbjct: 1097 YEGDYIPKNKKLLITDHS-TSTNSSFISNSLVFSDLVSIKEKVSQDMYLNK 1146
Score = 42 (19.8 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 215 VESVADEYEESKGDDVADEEQETE 238
+E+ +E ++ + ADEE E E
Sbjct: 374 IENKQEEQQQHQQQQQADEEDEAE 397
Score = 39 (18.8 bits), Expect = 3.2e-51, Sum P(3) = 3.2e-51
Identities = 21/96 (21%), Positives = 44/96 (45%)
Query: 23 LSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRA-VVDDEPNFSDI--T 79
L RD + ++D+ K ++ + E +R+ K++ + TE + + + ++ T
Sbjct: 511 LERDLKKKHEKELLDKAKKEEEEREAKRQSRKLNFL-ITQTELYSHFIGKKIKTDELEGT 569
Query: 80 DFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFD 115
+ D L+S T +++ A +D G DI D
Sbjct: 570 NADDNLKSNTKE---HLDKYADVD-GSATHDINAVD 601
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 348 (127.6 bits), Expect = 9.2e-52, Sum P(3) = 9.2e-52
Identities = 102/326 (31%), Positives = 161/326 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ L +Q +GL WL SL+ GIL D+MGLGKT+Q + L +++ L++
Sbjct: 769 VNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLII 828
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L +W+ E + + Y G+ R + Q VLLTTY+ V
Sbjct: 829 VPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV------ 882
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+A W YMI+DEGH +KN + + L + +R++++GTP+QN
Sbjct: 883 ------IKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNK 936
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 937 LPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETI--LIIRRLHKVLRPF 994
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
LRRLK EV H+ L K E I+ +++ QR LY+ + ++L+ DGS
Sbjct: 995 LLRRLKKEVEHQ--------LPDKVEYIIKCDMSALQRVLYKHMQSKGVLLT--DGSEKG 1044
Query: 690 --------AL--TI--LKKICDHPLL 703
AL TI L+K+C+HP +
Sbjct: 1045 KHGKGGAKALMNTIVQLRKLCNHPFM 1070
Score = 299 (110.3 bits), Expect = 9.2e-52, Sum P(3) = 9.2e-52
Identities = 67/181 (37%), Positives = 111/181 (61%)
Query: 754 KISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV 809
++S LLD+++P+ H VL+F Q + + +I++ +G + + +LR+DGTTKA DR
Sbjct: 1095 RVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRG 1154
Query: 810 KIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 868
+++ F +G +FLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+
Sbjct: 1155 ELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQR 1214
Query: 869 KDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLF---KTATEHKEQIRYFSQQDLR 916
+V V RLMT +VEE+I Y+ +++ + G+F T +E ++ ++ QD
Sbjct: 1215 NEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDN 1274
Query: 917 E 917
E
Sbjct: 1275 E 1275
Score = 42 (19.8 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 3 LDDKKPVKVEAEVRTNDCSVLSRD-HDHVESRSVIDEEKPQKVK 45
++ + P KVE ++ D S L R + H++S+ V+ + +K K
Sbjct: 1003 VEHQLPDKVEYIIKC-DMSALQRVLYKHMQSKGVLLTDGSEKGK 1045
Score = 40 (19.1 bits), Expect = 9.2e-52, Sum P(3) = 9.2e-52
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R+ EK QK++ E +RR
Sbjct: 490 EARATEKLEKQQKLEAERKRR 510
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 327 (120.2 bits), Expect = 9.8e-52, Sum P(2) = 9.8e-52
Identities = 128/523 (24%), Positives = 225/523 (43%)
Query: 222 YEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSAR-ESFESNLDGEEDGGSLSEVE 280
+++ + DD D T GI K + L S R E E+ L E+E
Sbjct: 97 FDDDQVDDDEDLNDPTIQNGINRKDETEEARNERLESIRLEKERLKQIREQQRKQLQELE 156
Query: 281 GDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVV 340
++ + +K + K +R F S + ++ + + S
Sbjct: 157 KNQRQQLQEDKEKSANARLKYLLERTEIFTHFVSNSNNNNNTKKTKTKSPVLSSSSASSS 216
Query: 341 NRPDRRD--GKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRS----TYMLPG-KIG 393
N + + G + S + ++ ++ D++++ + ++ P S T P K G
Sbjct: 217 NNNNNNNNNGSIVSSTPTKRGHITEEAEDEAIMNE--TMEEEEPHSFNFFTSSPPYIKSG 274
Query: 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAP 452
M +Q GL WL L+ +G GIL D+MGLGKT+Q L L + I+ L++AP
Sbjct: 275 TMR-DYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAP 333
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYEL-QYVLQDKGVLLTTYDIVRNNSKSL 511
K+ LS W KE T ++ + G+ + + Q + + V +TTY++ +
Sbjct: 334 KSTLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIREKSTF 393
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
+ S W Y+I+DE H IKN ++ +K + S R++I+GTP+QNNL
Sbjct: 394 KKFS------------WRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLH 441
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L NF P++ + F + ++L N + +D+ L + ++P+ L
Sbjct: 442 ELWSLLNFLLPDVFSSSDDFDKWFDLANNTENQQEVIDK-----------LHKVLRPFLL 490
Query: 632 RRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAAL 691
RR+K EV E + + + + ++L L++ +V + + + L
Sbjct: 491 RRIKTEV--EKSLPPKKEIKLFVGLSTMQK--EWYKRLLSKDLDAVVVGAKGNTGRVRLL 546
Query: 692 TI---LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKL 731
I L+K C+HP L E G + N AL +KL
Sbjct: 547 NICMQLRKACNHPYLFDGAEEEPYTTGEHLIDNSGKMALLDKL 589
Score = 305 (112.4 bits), Expect = 9.8e-52, Sum P(2) = 9.8e-52
Identities = 75/198 (37%), Positives = 115/198 (58%)
Query: 734 HIADVAEKDDFQE-QH--DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG 790
++ D AE++ + +H DN S K++ + LL KL G VLIFSQ +ML+++++ +
Sbjct: 560 YLFDGAEEEPYTTGEHLIDN-SGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYML 618
Query: 791 SKGYKFLRIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+GYK+ RIDG+T++ R + ++ + G FLLT++ GGLG+TL AD VI+ D
Sbjct: 619 YRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSD 678
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRY 909
WNP D Q+ DRA+RIGQ K V VYR +T ++EEK+ K K L + +
Sbjct: 679 WNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGRLVEA 738
Query: 910 FSQQDLRELLSLPKQGFD 927
ELL++ + G D
Sbjct: 739 NKNAKPEELLAMLRFGAD 756
Score = 54 (24.1 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 242 IGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKN 301
+G KRNE + ++ + +S E++ + EED + E E D++ ++ H +
Sbjct: 42 VGNKRNESPTISSSGNQSPKSMENDNENEEDE-VMEEEEVDDNEENGNDEDAPHPFFDDD 100
Query: 302 EPKRVHDGERFNGQSFVSG-GREEYDDE 328
+ V D E N + +G R++ +E
Sbjct: 101 Q---VDDDEDLNDPTIQNGINRKDETEE 125
Score = 48 (22.0 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 17/90 (18%), Positives = 43/90 (47%)
Query: 224 ESKGDDVADEEQETENVGIGLKRNEPR-WVDNNLVSARESF-ESNLDGEEDGGSLSEVEG 281
E++ D+V +EE+ +N G + P + D++ V E + + + +E
Sbjct: 68 ENEEDEVMEEEEVDDNEENGNDEDAPHPFFDDDQVDDDEDLNDPTIQNGINRKDETEEAR 127
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHDGER 311
+E L + K+ ++ ++ + K++ + E+
Sbjct: 128 NERLESIRLEKERLKQIREQQRKQLQELEK 157
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 353 (129.3 bits), Expect = 1.7e-51, Sum P(4) = 1.7e-51
Identities = 110/343 (32%), Positives = 167/343 (48%)
Query: 381 GPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH 440
GP +P + L +Q GL WL L+ GIL D+MGLGKT+Q LA L
Sbjct: 810 GPGLKTPIPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAV 869
Query: 441 SRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLL 498
+ LVV P +++ +W E KI Y+G + RQ ++ + VL+
Sbjct: 870 EHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLI 929
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
T+Y +V + + L+ S W YMILDE H IKN +QR ++LL + R
Sbjct: 930 TSYQLVLQDQQVLKRRS------------WHYMILDEAHNIKNFRSQRWQALLTFRTRAR 977
Query: 559 IIISGTPIQNNLKELWALFNFCCP--------ELLGDNKWFKEKYELPI--LRGNDKHAL 608
++++GTP+QNNL ELW+L F P E D + F E + P+ + + + +
Sbjct: 978 LLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETM 1037
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 668
D E + V +L ++PY LRRLK +V + + K E +V+ RL+ QR
Sbjct: 1038 DDEAK---QVVTKLHTVLRPYILRRLKADVEKQ--------MPGKYEHVVYCRLSKRQRY 1086
Query: 669 LYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707
LY+ F++ E + S S + L L+K+C+HP L R
Sbjct: 1087 LYDGFMSRAQTKETLASGNYLSIINCLMQLRKVCNHPDLFETR 1129
Score = 296 (109.3 bits), Expect = 1.7e-51, Sum P(4) = 1.7e-51
Identities = 65/166 (39%), Positives = 99/166 (59%)
Query: 759 LSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LDKL+ + GH LIF+Q KML+++++ + G+++LR+DGTTK R + +
Sbjct: 1375 LQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDR 1434
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
F + F+L+S+ GGLG+ LT AD VI D WNP+ D Q DR +RIGQ +DV +Y
Sbjct: 1435 FNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIY 1494
Query: 875 RLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 919
R ++ T+E I RK K L + E YF++ D+R+++
Sbjct: 1495 RFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMI 1540
Score = 42 (19.8 bits), Expect = 1.7e-51, Sum P(4) = 1.7e-51
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 64 ENRAVVDD-EPNFSDITDFDSPLQSKTVSAMVNIESRAVIDD 104
EN V + EP SD+ +SP+ S T+ ++ E + V D
Sbjct: 12 ENERVTERAEPVPSDLLPNNSPVNSPTIDPTLS-EIKDVAAD 52
Score = 42 (19.8 bits), Expect = 1.7e-51, Sum P(4) = 1.7e-51
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
E+ +E E + + +E+ + + +GL E R NL + + +ED
Sbjct: 481 ENDDEEGESNMSTETEEEDGDDRDDDVGLTAEELRLKYANLPDTNPHPDQSPYSDEDSED 540
Query: 276 LSEVEGD 282
++ D
Sbjct: 541 SDDIAAD 547
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 340 (124.7 bits), Expect = 1.7e-51, Sum P(3) = 1.7e-51
Identities = 105/323 (32%), Positives = 156/323 (48%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q GL+W+ SL+ GIL D+MGLGKT+Q + L + LV+
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVI 472
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L++W E S Y G + Q + VLLTTY+ + +
Sbjct: 473 VPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKDRPL 532
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSA-HRIIISGTPIQNN 569
L S I W YMI+DEGH +KN ++ +L S+ +R+I++GTP+QNN
Sbjct: 533 L---SRIK---------WIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNN 580
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P + K F E + P G DK L E+ + V + L + ++
Sbjct: 581 LPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESL--LVIRRLHKVLR 638
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI--VLSAFDG 685
P+ LRRLK +V A L K E ++ +++ Q++LY + V A G
Sbjct: 639 PFLLRRLKKDV--------EAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRG 690
Query: 686 SP-LAAL--TI--LKKICDHPLL 703
+ L T+ LKKIC+HP +
Sbjct: 691 KTGIKGLQNTVMQLKKICNHPFV 713
Score = 297 (109.6 bits), Expect = 1.7e-51, Sum P(3) = 1.7e-51
Identities = 59/144 (40%), Positives = 94/144 (65%)
Query: 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810
+S K + +L KL GH +L+F Q +++N++++ + + +++LR+DG+TKA DR K
Sbjct: 734 VSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSK 793
Query: 811 IVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F + +FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ K
Sbjct: 794 LLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTK 853
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFK 893
+V +YRL+T +VEE I + +K
Sbjct: 854 EVRIYRLITEKSVEENILARAQYK 877
Score = 42 (19.8 bits), Expect = 1.7e-51, Sum P(3) = 1.7e-51
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 26 DHDHVESRSVIDEEKPQKVKIEGRRRL---CKVSSRDVD-NTE 64
+HD+ E + D + + +IE RR L K VD NTE
Sbjct: 29 EHDNTEYAQLCDVLRSAQSEIEARRDLKGHIKRCFSSVDKNTE 71
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 362 (132.5 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 106/351 (30%), Positives = 175/351 (49%)
Query: 336 GKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML--PGKI- 392
G + N + D ++++ ++ + L+ +D E E T+ G + P +
Sbjct: 143 GNTISNYFKKADLNVDEAKNTTVQEALEHAAD----EFEAKPTVLGEQELVATQQPAPVT 198
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452
G + +Q EGL WL SL G GIL D+MGLGKT+Q +A + L+ AP
Sbjct: 199 GGKMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHNVSGPFLISAP 258
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV-LQDKG-----VLLTTYDIVRN 506
+ +S+W+ E K Y GT + Q +++ L+D+ V+ T+Y+I N
Sbjct: 259 LSTVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVVCTSYEICMN 318
Query: 507 NSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566
+ K F++ W Y+I+DEGH +KN + + K LL SA+R++I+GTP+
Sbjct: 319 DRK------FLAQYQ------WRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPL 366
Query: 567 QNNLKELWALFNFCCPELLGDNKWFKEKYELP-ILRGNDK-HALDREKRIGSAVAKELRE 624
QNN+ ELW+L +F PE+ D F+ ++ +L N + ++R KR + +
Sbjct: 367 QNNITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKR---TLVSTMHS 423
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN 675
++P+ LRR+K +V + L KK E I++ LT Q+ LY LN
Sbjct: 424 ILKPFLLRRVKTDV--------ESALPKKREYILYAPLTLEQKDLYREILN 466
Score = 270 (100.1 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 59/134 (44%), Positives = 82/134 (61%)
Query: 761 LLDKLIP----EGHNVLIFSQTRKMLNLIQE-SIGSKGYKFLRIDGTTKASDRVKIVNDF 815
LLD+LIP +GH +LIFSQ + L+++Q+ + + + RIDG +DR + F
Sbjct: 630 LLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAF 689
Query: 816 QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
IFLL+++ GG G+ L AD VI+ D WNP D Q+ DRA+RIGQ K V+VYR
Sbjct: 690 NTDKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYR 749
Query: 876 LMTCGTVEEKIYRK 889
L T GTVE+ + K
Sbjct: 750 LATKGTVEQTLLEK 763
Score = 41 (19.5 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 706 KRAAEDVLDGM-DSMLNPEDAALAEKLAMHIADVAE 740
K E DG +++ N ED + K MH+ + +E
Sbjct: 18 KMETETGNDGQSEAVENEEDMDVKTKALMHLLNTSE 53
Score = 40 (19.1 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 932 QQQLHEEHGDQHNMDESLEAHIQFLDTLGIA 962
+Q L E+ + ++DES + I+ +T+ +A
Sbjct: 550 EQGLEEDLDIEESIDESEQEEIERANTIKLA 580
Score = 38 (18.4 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 286 SRVHETKKHHQRQKKNEPKRVHDGERFNGQ 315
+R+ KK Q+QK+ + + + + Q
Sbjct: 70 ARLEAAKKQEQQQKEQQADTSEESRKASAQ 99
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 319 (117.4 bits), Expect = 2.3e-51, Sum P(3) = 2.3e-51
Identities = 71/224 (31%), Positives = 125/224 (55%)
Query: 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKD---DFQEQ 747
L +L+K+ +H LL + ++++ + +++ D +K F+
Sbjct: 449 LAVLQKVANHVALLQSASTSKQ---QETLIK----RICDQVFSKFPDFVQKSKDASFETL 501
Query: 748 HD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
D S K+ + LL+ +L+FS + K+L+++Q+ + G+ + R+DG+TK+
Sbjct: 502 SDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSE 561
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
+R+KIV +F I L+++ GG+GL A+ V++ DP WNP+ D Q++DRAYRIG
Sbjct: 562 ERIKIVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 621
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
Q +DV V+RL++ GTVEE +Y +Q++K L + RYF
Sbjct: 622 QCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 665
Score = 316 (116.3 bits), Expect = 2.3e-51, Sum P(3) = 2.3e-51
Identities = 101/319 (31%), Positives = 154/319 (48%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----- 442
+P I L +QREG ++L++ QGKG ILGDDMGLGKT+Q+ FLA + H +
Sbjct: 115 IPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 174
Query: 443 --------LI-------------KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVK 481
L+ K L+VAP ++L +W EL G ++ G
Sbjct: 175 IENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYF-RVTILHGN--- 230
Query: 482 TRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 540
+ EL V Q K + LTTY+ +R DE + W +I+DE H IK
Sbjct: 231 KKDNELVRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAHKIK 278
Query: 541 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL 600
NP + + + + RI ++GT +QNN+KELW + ++ P LLG FK+++ P+
Sbjct: 279 NPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVE 338
Query: 601 RGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL 660
G A RE G + L + + +FLRR K + +D L KK + +V+
Sbjct: 339 HGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLI--KDQ------LPKKEDRMVYC 390
Query: 661 RLTSCQRQLYEAFLNSEIV 679
LT Q+ +Y+ L ++ V
Sbjct: 391 SLTDFQKAVYQTVLETKDV 409
Score = 40 (19.1 bits), Expect = 2.3e-51, Sum P(3) = 2.3e-51
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1008 VDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKE 1042
VDG++ + IK+ K + K K S K+
Sbjct: 927 VDGSQDSETENPIKIRNNGDDRKTDVKGKRSISKQ 961
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 350 (128.3 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 128/492 (26%), Positives = 224/492 (45%)
Query: 223 EESKGDDVADEEQETENVGIG-LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEG 281
EE+K + + E E++N + + + + N + +S E++ + D S + +
Sbjct: 494 EENKNYEKDEHEYESDNYDKEKINKKKELILLKNDIE-NDSDETSEHIKRDSRSSCQKQN 552
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVN 341
E R+ + + + +R K + K D + + +D +D N
Sbjct: 553 CEKKRRIIKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNN-DDN 611
Query: 342 RPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQR 401
D D N + N + SDD+ +D + + T +P I L +Q
Sbjct: 612 NDDNNDDN-NDDNNDDNNNEHKNDSDDN--DDILTCNMDEKHLT-KIPPIIKATLRDYQH 667
Query: 402 EGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSRLIKRALVVAPKTLLSHWI 460
GL WL L+ GIL D+MGLGKT+Q L+ L ++ + LV+ P ++L +W
Sbjct: 668 AGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWE 727
Query: 461 KELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISD 519
EL KI Y+G + + + + +D + +++Y S+ + D
Sbjct: 728 IELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSY------------STVVKD 775
Query: 520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNF 579
W Y+ILDE H IKN +T+R +L + + ++I+GTP+QN+L+ELW+L +F
Sbjct: 776 HLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHF 835
Query: 580 CCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVF 639
P + + FKE + P+ +K + K + L I+PY LRRLK V
Sbjct: 836 LMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL----IDRLHTVIRPYILRRLKKNVE 891
Query: 640 HEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD-GSPLAALTIL---K 695
E + K E I+ +LT Q+ LY+ F+N++ V + + G+ + + IL +
Sbjct: 892 KE--------MPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQLR 943
Query: 696 KICDHPLLLTKR 707
K+C+H L T +
Sbjct: 944 KVCNHCDLFTNK 955
Score = 283 (104.7 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 60/142 (42%), Positives = 88/142 (61%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL K EG+ L+F+Q KML++++ + Y F+R+DG+TK R KI
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V F IF+ +++ G +G+ LT A+ VI D WNPS D Q++DR +RIGQ KDV
Sbjct: 1827 VTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDV 1886
Query: 872 VVYRLMTCGTVEEKIYRKQIFK 893
V+R + TVEE I++KQ+ K
Sbjct: 1887 HVFRFVCEYTVEENIWKKQLQK 1908
Score = 84 (34.6 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 35/162 (21%), Positives = 66/162 (40%)
Query: 220 DEYEESKGDDVADEEQETEN----VGIGLKRNEPRWVDNNLVSARESFESNLDGE-EDGG 274
+E+ G DV E + I K N DNN +S E +++N E D
Sbjct: 994 NEFTSLGGRDVTKETSPSSKSFDLAHILTKHNTNELYDNNHIS--ELYDNNHISELYDNN 1051
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIV 334
+SE+ + H+S +++ H+ K N + + N + G + ++
Sbjct: 1052 HISELYDNNHISELYDNPMSHKNYKHNSNGYTYPNDPINNMNNNPSGFTKTSEQ------ 1105
Query: 335 SGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGS 376
G++V + RD + H+ + N+L +S+ D+ S
Sbjct: 1106 FGQIVSHE---RDNNYHMMDHNNMNNLLSKEMVNSLRNDDNS 1144
Score = 56 (24.8 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 48/214 (22%), Positives = 83/214 (38%)
Query: 228 DDVADEEQETENVGIGLKRNEPRWVDNNLV-----SARESFESNLDGEEDGGSLSEVEGD 282
D+ D + E ++G N+ + DNN+ S +S ++N+D E D S + + D
Sbjct: 369 DNNNDHKSEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNNID-ENDNNS--DHQSD 425
Query: 283 EHLSRVHETKKHHQRQKKNEPKRVHDGERFN--GQSFVSGGREEYDDEDDCVIVSGKLVV 340
+ HETK + E + + +N G+ + S +E Y KL
Sbjct: 426 QEQFN-HETKDDIIKNSSYE--HIDNKNYYNKTGEDYKSD-KENYSPTR----FHNKLKK 477
Query: 341 NRPDRRDGKLN--KSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGN---M 395
+ D D KL K D++ +S D+ I + +L I N
Sbjct: 478 EKYDEYDTKLKIEKREEENKNYEKDEHEYESDNYDKEKINKK--KELILLKNDIENDSDE 535
Query: 396 LFPH-QREGLRWLWSLHCQGKGGILGDDMGLGKT 428
H +R+ +C+ K I+ D+ L +T
Sbjct: 536 TSEHIKRDSRSSCQKQNCEKKRRIIKDEYNLRRT 569
Score = 52 (23.4 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 38/186 (20%), Positives = 70/186 (37%)
Query: 124 SENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNL 183
S ND G N I + N+ D++ +D EDD + K+GD G N
Sbjct: 306 SHNDEKSGDNSIGEDDNNN---------DEKGGDNNID-EDDNNNDEKSGDNSIGEDDNN 355
Query: 184 PEYXXXXXXXXXXXXXXXXXXGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIG 243
++ ++DN G ++ DE D D + ++
Sbjct: 356 NDHKSGDNNIDEDDNNNDHK---SEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNN 412
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKN-E 302
+ N DNN + + N + ++D S E ++ + ++T + ++ K+N
Sbjct: 413 IDEN-----DNNSDHQSDQEQFNHETKDDIIKNSSYEHIDNKNYYNKTGEDYKSDKENYS 467
Query: 303 PKRVHD 308
P R H+
Sbjct: 468 PTRFHN 473
Score = 49 (22.3 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 36/161 (22%), Positives = 63/161 (39%)
Query: 216 ESVADEYEESKG-DDVADEEQETENVG--IGLKRNEPRWVDNNLVSARESFESNLDGEED 272
+ + D+ EE D+ E+EN I + +E L+ F+S ED
Sbjct: 231 DDLTDQEEEDYLLDEQMSSTDESENKEEEINMLDDEANLPIEELLKRMYGFKSG----ED 286
Query: 273 GGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCV 332
+ E E D + V ET H +K + + + + N + +E D+ +D
Sbjct: 287 YINFMENEDDANEENVIETS--HNDEKSGD-NSIGEDDNNNDEKGGDNNIDEDDNNND-- 341
Query: 333 IVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLED 373
SG + D + +KS + + DD ++D ED
Sbjct: 342 EKSGDNSIGEDDNNND--HKSGDNNIDE--DDNNNDHKSED 378
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKH 606
N++ EL+ N EL DN E Y+ P+ N KH
Sbjct: 1042 NHISELYD--NNHISELY-DNNHISELYDNPMSHKNYKH 1077
Score = 43 (20.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEM 656
+ EKR+ +K + + F ++++ V+ E TL+KK EM
Sbjct: 128 EEEKRL-KLYSKNISSYMD-VFWKKIEKLVWEEKKRELQQTLNKKKEM 173
Score = 42 (19.8 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 706 KRAAEDVLDGMD-SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFIL-SLLD 763
++ E V D D LN +++ ++ + ++DFQ+ ++ S +F+ +L D
Sbjct: 1985 EKTLEHVEDKDDIRALNETKKETQNEISQNMQEFTTRNDFQDSYNLTSYCFNFLNENLTD 2044
Query: 764 KL 765
L
Sbjct: 2045 SL 2046
Score = 39 (18.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 17 TNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFS 76
TN+ S +H+ R+ IDE K K + E + + V ++ N + NF
Sbjct: 1488 TNNSYYNSLEHNLWIKRNQIDERK--KEEEEEQNKYYNVCMNNLYILRNERIPIFGKNFL 1545
Query: 77 DITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYK 130
D+ + +K + + N + ID ++ V D + E DN K
Sbjct: 1546 DLIKKEF---TKDKNIVYNYTNNVPIDYYSSVKEVWVED-------ICEKDNKK 1589
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 350 (128.3 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 128/492 (26%), Positives = 224/492 (45%)
Query: 223 EESKGDDVADEEQETENVGIG-LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEG 281
EE+K + + E E++N + + + + N + +S E++ + D S + +
Sbjct: 494 EENKNYEKDEHEYESDNYDKEKINKKKELILLKNDIE-NDSDETSEHIKRDSRSSCQKQN 552
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVN 341
E R+ + + + +R K + K D + + +D +D N
Sbjct: 553 CEKKRRIIKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNN-DDN 611
Query: 342 RPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQR 401
D D N + N + SDD+ +D + + T +P I L +Q
Sbjct: 612 NDDNNDDN-NDDNNDDNNNEHKNDSDDN--DDILTCNMDEKHLT-KIPPIIKATLRDYQH 667
Query: 402 EGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSRLIKRALVVAPKTLLSHWI 460
GL WL L+ GIL D+MGLGKT+Q L+ L ++ + LV+ P ++L +W
Sbjct: 668 AGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWE 727
Query: 461 KELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISD 519
EL KI Y+G + + + + +D + +++Y S+ + D
Sbjct: 728 IELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSY------------STVVKD 775
Query: 520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNF 579
W Y+ILDE H IKN +T+R +L + + ++I+GTP+QN+L+ELW+L +F
Sbjct: 776 HLVFKRKRWKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHF 835
Query: 580 CCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVF 639
P + + FKE + P+ +K + K + L I+PY LRRLK V
Sbjct: 836 LMPNIFTSHLDFKEWFSDPLNLAIEKSKIHHSKEL----IDRLHTVIRPYILRRLKKNVE 891
Query: 640 HEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD-GSPLAALTIL---K 695
E + K E I+ +LT Q+ LY+ F+N++ V + + G+ + + IL +
Sbjct: 892 KE--------MPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQLR 943
Query: 696 KICDHPLLLTKR 707
K+C+H L T +
Sbjct: 944 KVCNHCDLFTNK 955
Score = 283 (104.7 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 60/142 (42%), Positives = 88/142 (61%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL K EG+ L+F+Q KML++++ + Y F+R+DG+TK R KI
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
V F IF+ +++ G +G+ LT A+ VI D WNPS D Q++DR +RIGQ KDV
Sbjct: 1827 VTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDV 1886
Query: 872 VVYRLMTCGTVEEKIYRKQIFK 893
V+R + TVEE I++KQ+ K
Sbjct: 1887 HVFRFVCEYTVEENIWKKQLQK 1908
Score = 84 (34.6 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 35/162 (21%), Positives = 66/162 (40%)
Query: 220 DEYEESKGDDVADEEQETEN----VGIGLKRNEPRWVDNNLVSARESFESNLDGE-EDGG 274
+E+ G DV E + I K N DNN +S E +++N E D
Sbjct: 994 NEFTSLGGRDVTKETSPSSKSFDLAHILTKHNTNELYDNNHIS--ELYDNNHISELYDNN 1051
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIV 334
+SE+ + H+S +++ H+ K N + + N + G + ++
Sbjct: 1052 HISELYDNNHISELYDNPMSHKNYKHNSNGYTYPNDPINNMNNNPSGFTKTSEQ------ 1105
Query: 335 SGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGS 376
G++V + RD + H+ + N+L +S+ D+ S
Sbjct: 1106 FGQIVSHE---RDNNYHMMDHNNMNNLLSKEMVNSLRNDDNS 1144
Score = 56 (24.8 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 48/214 (22%), Positives = 83/214 (38%)
Query: 228 DDVADEEQETENVGIGLKRNEPRWVDNNLV-----SARESFESNLDGEEDGGSLSEVEGD 282
D+ D + E ++G N+ + DNN+ S +S ++N+D E D S + + D
Sbjct: 369 DNNNDHKSEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNNID-ENDNNS--DHQSD 425
Query: 283 EHLSRVHETKKHHQRQKKNEPKRVHDGERFN--GQSFVSGGREEYDDEDDCVIVSGKLVV 340
+ HETK + E + + +N G+ + S +E Y KL
Sbjct: 426 QEQFN-HETKDDIIKNSSYE--HIDNKNYYNKTGEDYKSD-KENYSPTR----FHNKLKK 477
Query: 341 NRPDRRDGKLN--KSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGN---M 395
+ D D KL K D++ +S D+ I + +L I N
Sbjct: 478 EKYDEYDTKLKIEKREEENKNYEKDEHEYESDNYDKEKINKK--KELILLKNDIENDSDE 535
Query: 396 LFPH-QREGLRWLWSLHCQGKGGILGDDMGLGKT 428
H +R+ +C+ K I+ D+ L +T
Sbjct: 536 TSEHIKRDSRSSCQKQNCEKKRRIIKDEYNLRRT 569
Score = 52 (23.4 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 38/186 (20%), Positives = 70/186 (37%)
Query: 124 SENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNL 183
S ND G N I + N+ D++ +D EDD + K+GD G N
Sbjct: 306 SHNDEKSGDNSIGEDDNNN---------DEKGGDNNID-EDDNNNDEKSGDNSIGEDDNN 355
Query: 184 PEYXXXXXXXXXXXXXXXXXXGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIG 243
++ ++DN G ++ DE D D + ++
Sbjct: 356 NDHKSGDNNIDEDDNNNDHK---SEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNN 412
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKN-E 302
+ N DNN + + N + ++D S E ++ + ++T + ++ K+N
Sbjct: 413 IDEN-----DNNSDHQSDQEQFNHETKDDIIKNSSYEHIDNKNYYNKTGEDYKSDKENYS 467
Query: 303 PKRVHD 308
P R H+
Sbjct: 468 PTRFHN 473
Score = 49 (22.3 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 36/161 (22%), Positives = 63/161 (39%)
Query: 216 ESVADEYEESKG-DDVADEEQETENVG--IGLKRNEPRWVDNNLVSARESFESNLDGEED 272
+ + D+ EE D+ E+EN I + +E L+ F+S ED
Sbjct: 231 DDLTDQEEEDYLLDEQMSSTDESENKEEEINMLDDEANLPIEELLKRMYGFKSG----ED 286
Query: 273 GGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCV 332
+ E E D + V ET H +K + + + + N + +E D+ +D
Sbjct: 287 YINFMENEDDANEENVIETS--HNDEKSGD-NSIGEDDNNNDEKGGDNNIDEDDNNND-- 341
Query: 333 IVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLED 373
SG + D + +KS + + DD ++D ED
Sbjct: 342 EKSGDNSIGEDDNNND--HKSGDNNIDE--DDNNNDHKSED 378
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKH 606
N++ EL+ N EL DN E Y+ P+ N KH
Sbjct: 1042 NHISELYD--NNHISELY-DNNHISELYDNPMSHKNYKH 1077
Score = 43 (20.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEM 656
+ EKR+ +K + + F ++++ V+ E TL+KK EM
Sbjct: 128 EEEKRL-KLYSKNISSYMD-VFWKKIEKLVWEEKKRELQQTLNKKKEM 173
Score = 42 (19.8 bits), Expect = 5.7e-26, Sum P(2) = 5.7e-26
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 706 KRAAEDVLDGMD-SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFIL-SLLD 763
++ E V D D LN +++ ++ + ++DFQ+ ++ S +F+ +L D
Sbjct: 1985 EKTLEHVEDKDDIRALNETKKETQNEISQNMQEFTTRNDFQDSYNLTSYCFNFLNENLTD 2044
Query: 764 KL 765
L
Sbjct: 2045 SL 2046
Score = 39 (18.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 17 TNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFS 76
TN+ S +H+ R+ IDE K K + E + + V ++ N + NF
Sbjct: 1488 TNNSYYNSLEHNLWIKRNQIDERK--KEEEEEQNKYYNVCMNNLYILRNERIPIFGKNFL 1545
Query: 77 DITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYK 130
D+ + +K + + N + ID ++ V D + E DN K
Sbjct: 1546 DLIKKEF---TKDKNIVYNYTNNVPIDYYSSVKEVWVED-------ICEKDNKK 1589
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 340 (124.7 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 549 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 608
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 609 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 662
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 663 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 716
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 717 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 774
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 775 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 826
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 827 GKGGTKTLMNTIMQLRKICNHPYM 850
Score = 299 (110.3 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 883 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 942
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 943 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1002
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1003 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1047
Score = 48 (22.0 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 455 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 514
Query: 327 DE 328
DE
Sbjct: 515 DE 516
Score = 37 (18.1 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 248 EARITEKLEKQQKIEQERKRR 268
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 361 (132.1 bits), Expect = 3.5e-51, Sum P(4) = 3.5e-51
Identities = 101/325 (31%), Positives = 169/325 (52%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKRALVV 450
+G L +Q GL W+ SL+ GIL D+MGLGKT+Q + L+ + I LV+
Sbjct: 466 VGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVI 525
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ--DKGVLLTTYDIVRNNS 508
P + +++W E S Y GT +++ LQ+ ++ + VLLTTY+ +
Sbjct: 526 VPLSTITNWTLEFEKWAPSLNTIIYKGT--PNQRHSLQHQIRVGNFDVLLTTYEYI---- 579
Query: 509 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTPIQ 567
++ S +S D W +MI+DEGH +KN ++ + ++ + +R+I++GTP+Q
Sbjct: 580 --IKDKSLLSKH--D----WAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQ 631
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627
NNL ELWAL NF P++ K F++ + P + L+ + + + L + ++
Sbjct: 632 NNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLR 691
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSAFDG 685
P+ LRRLK EV E D L K E ++ +L+ Q+QLY+ L N+ V + +G
Sbjct: 692 PFLLRRLKKEV--EKD------LPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEG 743
Query: 686 SPLAALT-----I--LKKICDHPLL 703
+ + I L+KIC+HP +
Sbjct: 744 ATKGGIKGLNNKIMQLRKICNHPFV 768
Score = 277 (102.6 bits), Expect = 3.5e-51, Sum P(4) = 3.5e-51
Identities = 57/138 (41%), Positives = 91/138 (65%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ GH VL+F Q ++++++++ + K K++R+DG+TK +R +++N F
Sbjct: 795 LLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFN 854
Query: 817 EGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
D FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK +V + R
Sbjct: 855 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 914
Query: 876 LMTCGTVEEKIYRKQIFK 893
L+T +VEE I + + K
Sbjct: 915 LITTDSVEEVILERAMQK 932
Score = 44 (20.5 bits), Expect = 3.5e-51, Sum P(4) = 3.5e-51
Identities = 19/95 (20%), Positives = 41/95 (43%)
Query: 5 DKKPVKVEAEVRTNDCSV-LSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNT 63
+KKP+K+ A+ S+ L + ++ D + ++ R+ ++ R N
Sbjct: 155 EKKPIKISADFNAKAKSLGLESKFSNATKTALGDPDTEIRISARISNRINELE-RLPANL 213
Query: 64 ENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIES 98
++ DD F D S + + + A+V ++S
Sbjct: 214 GTYSL-DDCLEFITKDDLSSRMDTFKIKALVELKS 247
Score = 42 (19.8 bits), Expect = 3.5e-51, Sum P(4) = 3.5e-51
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 1004 VARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIKRL 1047
V N DG P KK+++ K + K K I +++L
Sbjct: 1215 VLENNDGKRAEEKPESKSPAKKTAAKKTKTKSKSLGIFPTVEKL 1258
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 314 (115.6 bits), Expect = 3.6e-51, Sum P(2) = 3.6e-51
Identities = 73/224 (32%), Positives = 123/224 (54%)
Query: 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---FQEQ 747
L +L+K+ +H LL + ++++ + +++ D +K F+
Sbjct: 386 LAVLQKVANHVALLQTASTSRQ---QETLIK----RICDQVFSRFPDFVQKSKDAAFETL 438
Query: 748 HD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
D S K+ + LL+ VL+FS + K+L+++Q+ + G + R+DG+TK+
Sbjct: 439 SDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSE 498
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
+R+KIV +F I L+++ GGLGL A+ V++ DP WNP+ D Q++DRAYRIG
Sbjct: 499 ERIKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 558
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
Q +DV V RL++ GTVEE +Y +Q++K L + RYF
Sbjct: 559 QCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 602
Score = 309 (113.8 bits), Expect = 3.6e-51, Sum P(2) = 3.6e-51
Identities = 101/318 (31%), Positives = 153/318 (48%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL--------- 438
+P I L +QREG ++L+ QG+G ILGDDMGLGKT+Q+ FLA +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAVLGKKGTRED 112
Query: 439 -------FHSRLIKRA---------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT 482
F R +K+ L+VAP ++L +W EL G ++ G
Sbjct: 113 IENNMPEFLLRNMKKDPPSTAKKMFLIVAPLSVLYNWKDELDTWGYF-RVTILHGN---K 168
Query: 483 RQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 541
+ EL V Q K + LTTY+ +R DE + W +I+DE H IKN
Sbjct: 169 KDSELIRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAHRIKN 216
Query: 542 PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILR 601
P + + + + RI ++GT +QNN+KELW + ++ P LLG FK+++ P+
Sbjct: 217 PKARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEH 276
Query: 602 GNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR 661
G A RE G + L ++ +FLRR K + +D L KK + +V+
Sbjct: 277 GQRHTATKRELATGRKAMQRLARKMSGWFLRRTKTLI--KDQ------LPKKEDRMVYCS 328
Query: 662 LTSCQRQLYEAFLNSEIV 679
LT Q+ +Y+ L +E V
Sbjct: 329 LTDFQKAVYQTVLETEDV 346
Score = 40 (19.1 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 236 ETENVGIGLKRNEPRWVDNNLVSARESFESNLDGE 270
ETE+V + L+ +EP ++ +++N GE
Sbjct: 342 ETEDVSLILQSSEPCTCNSGQKRRNCCYKTNSQGE 376
Score = 38 (18.4 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 742 DDFQEQHDNISC-KISF 757
DDF DN+S ISF
Sbjct: 797 DDFSSSDDNLSVGHISF 813
>WB|WBGene00000274 [details] [associations]
symbol:btf-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15192 InterPro:IPR022707
Pfam:PF12054 EMBL:Z80344 EMBL:Z82081 GeneTree:ENSGT00630000089754
EMBL:Z82079 RefSeq:NP_496802.2 ProteinModelPortal:G5EF07 SMR:G5EF07
EnsemblMetazoa:F15D4.1 GeneID:174965 KEGG:cel:CELE_F15D4.1
CTD:174965 WormBase:F15D4.1 OMA:ENDAMAS NextBio:886220
Uniprot:G5EF07
Length = 1649
Score = 500 (181.1 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 126/375 (33%), Positives = 199/375 (53%)
Query: 525 DAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPEL 584
D +W+Y++LDEGH+++N + K ++ R+I+SGTP+QN+ +LW+LF + P
Sbjct: 1210 DRVWNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLMPGY 1269
Query: 585 LGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDV 644
LG K F+ ++ I++ A + + + GSA +L + + P+ +RRLK EV E
Sbjct: 1270 LGSEKQFRSQFLKKIMKCRLPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKE--- 1326
Query: 645 TSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD-G-SPLAALTILKKICDHPL 702
L +KN LT Q+++Y F+ S D G S L L L+K+ DH
Sbjct: 1327 -----LPEKNVQDYECELTEDQKEIYR-FVVDRCTSSQEDVGLSSLVTLITLRKLTDHTK 1380
Query: 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL 762
L+ A+ + +L+ AA + K+ + E + + + + L
Sbjct: 1381 LVHDTLAK--IGAPQYILSKALAAKSGKMEALKQLLIECEICKNPDEEVEQPED-----L 1433
Query: 763 DKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY----KFLRIDGTTKASDRVKIVNDFQEG 818
L+ GH LIF Q + L+ +++ S + L +DG+ A DR+K+VN F E
Sbjct: 1434 GGLVASGHRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNED 1493
Query: 819 DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMT 878
+ +LT+ VGG+GL LT AD VI +D WNP D Q++DRA+R+GQ ++V VYRL+T
Sbjct: 1494 KTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLIT 1553
Query: 879 CGTVEEKIYRKQIFK 893
GTVEEK+ FK
Sbjct: 1554 QGTVEEKVMSLAKFK 1568
Score = 135 (52.6 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 394 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFH---SRLIKRALV 449
+ML +Q EG+ W+ L G GIL DDMGLGKT+Q +C + S + +L+
Sbjct: 1100 SMLREYQLEGITWIRFLRTYGLHGILADDMGLGKTLQTMCSIALSVDRDEMSEFHRCSLI 1159
Query: 450 VAPKTLLSHWIKE 462
V P+TL+ HW E
Sbjct: 1160 VCPRTLVDHWCLE 1172
Score = 38 (18.4 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 18 NDCSVLSRDHDHVESR 33
N VLS+D D+V SR
Sbjct: 979 NRLVVLSKDLDNVNSR 994
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 340 (124.7 bits), Expect = 4.3e-51, Sum P(4) = 4.3e-51
Identities = 104/335 (31%), Positives = 162/335 (48%)
Query: 383 RSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-S 441
+ST+++ G + +Q +GL W+ SL+ GIL D+MGLGKT+Q G + L
Sbjct: 717 QSTFLINGTLKQ----YQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELK 772
Query: 442 RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTY 501
RL L++ P + LS+W+ EL S Y GT R Q VL+TTY
Sbjct: 773 RLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQLRSGKFNVLITTY 832
Query: 502 DIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRII 560
+ + I D+ W YMI+DEGH +KN + + L + R++
Sbjct: 833 EYI------------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLL 880
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTP+QN L ELWAL NF P + F++ + P ++ L+ E+ I + +
Sbjct: 881 LTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIR 938
Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
L + ++P+ LRRLK EV + L +K E ++ +++ Q+ LY I+L
Sbjct: 939 RLHKVLRPFLLRRLKKEV--------ESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILL 990
Query: 681 SAFDGSPL------AALTI------LKKICDHPLL 703
+ DGS A T+ LKKIC+HP +
Sbjct: 991 T--DGSEKDKKGKGGAKTLMNTIMQLKKICNHPYM 1023
Score = 293 (108.2 bits), Expect = 4.3e-51, Sum P(4) = 4.3e-51
Identities = 65/166 (39%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDF- 815
LLD+++P+ H VL+F Q ++ ++++ G + + +LR+DGTTK+ DR ++ F
Sbjct: 1056 LLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFN 1115
Query: 816 QEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+EG IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1116 EEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1175
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1176 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1220
Score = 50 (22.7 bits), Expect = 4.3e-51, Sum P(4) = 4.3e-51
Identities = 26/113 (23%), Positives = 49/113 (43%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKV--KIEGR-RRLCKVSSRDV 60
D K ++EA + N ++ D ES S +EE ++V + E +++ +S +V
Sbjct: 612 DAPKSSQLEAWLEMNPGYEVAPRSDSEESGSDFEEEDDEEVVSRAESEEKKVIDPNSDEV 671
Query: 61 DNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITV 113
T + +++ D+ D S +T S + AVI+ K S +
Sbjct: 672 SETAAKHIIESAKQ--DVDDEYSSQAGQTSSQSYYGVAHAVIERVDKQSTFLI 722
Score = 48 (22.0 bits), Expect = 3.8e-50, Sum P(5) = 3.8e-50
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDD 327
D EE G E + +E +SR +K K +P E + + +++ DD
Sbjct: 636 DSEESGSDFEEEDDEEVVSRAESEEK-----KVIDPNSDEVSETA-AKHIIESAKQDVDD 689
Query: 328 E 328
E
Sbjct: 690 E 690
Score = 46 (21.3 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1288 KDDAEVERL-TCEEEEEKIFGRGSRHRRDVDYSDALTEKQWLRAIEDGNLEEI 1339
Score = 45 (20.9 bits), Expect = 4.3e-51, Sum P(4) = 4.3e-51
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1003 LVARNVDGAEYAFNPRDIKLNKKSS-SPKNEAKLKESD 1039
++ARN D E F D+ ++ + +PK + +L E D
Sbjct: 1244 MIARNEDEFEL-FMRMDLDRRREDARNPKRKPRLMEED 1280
Score = 39 (18.8 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+++P ++E A HI + A++D
Sbjct: 663 VIDPNSDEVSETAAKHIIESAKQD 686
Score = 38 (18.4 bits), Expect = 3.8e-50, Sum P(5) = 3.8e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 428 EARMTEKLEKQQKIEQERKRR 448
Score = 38 (18.4 bits), Expect = 1.4e-18, Sum P(4) = 1.4e-18
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 743 DFQEQHDNISCKI 755
DF+E H +IS KI
Sbjct: 464 DFKEYHRSISGKI 476
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 311 (114.5 bits), Expect = 5.1e-51, Sum P(2) = 5.1e-51
Identities = 74/227 (32%), Positives = 124/227 (54%)
Query: 691 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---FQEQ 747
L +L+K+ +H LL A ++++ + +++ D +K F+
Sbjct: 383 LAVLQKVANHVALLQ---AASTSKQQETLIK----RICDQVFSRFPDFVQKSKDAAFETL 435
Query: 748 HD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
D S K+ + LL+ VL+FS + K+L+++Q+ + G + R+DG+TK+
Sbjct: 436 SDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSE 495
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
+R+KIV +F I L+++ GGLGL A+ V++ DP WNP+ D Q++DRAYRIG
Sbjct: 496 ERIKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 555
Query: 867 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQ 913
Q +DV V RL++ GTVEE +Y +Q++K L + RY + Q
Sbjct: 556 QCRDVKVLRLISLGTVEEIMYLRQLYKQQLHCVVVGSENAKRYEAVQ 602
Score = 311 (114.5 bits), Expect = 5.1e-51, Sum P(2) = 5.1e-51
Identities = 112/375 (29%), Positives = 174/375 (46%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----- 442
+P I L +QREG ++L+ QG+G ILGDDMGLGKT+Q+ FLA + +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAVLGKKGTRED 112
Query: 443 --------LI---------KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY 485
L+ K L+VAP ++L +W EL G ++ G +
Sbjct: 113 IENNMPEFLLRTKDGRREKKLFLIVAPLSVLYNWRDELDTWGYF-RVTILHGN---KKDN 168
Query: 486 ELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544
EL V Q K + LTTY+ +R DE + W +I+DE H IKNP
Sbjct: 169 ELIRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAHRIKNPKA 216
Query: 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604
+ + + + RI ++GT +QNN+KELW + ++ P LLG FK+ + P+ G
Sbjct: 217 RITEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQR 276
Query: 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTS 664
A RE G + L ++ +FLRR K + +D L KK + +V+ LT
Sbjct: 277 HTATKRELATGRKAMQRLAIKMSGWFLRRTK--ILIKDQ------LPKKEDRMVYCSLTD 328
Query: 665 CQRQLYEAFLNSE---IVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLN 721
Q+ +Y+ L +E ++L + + P ++ + C T E V S L
Sbjct: 329 FQKAVYQTVLETEDVSLILQSSEPCPCSSGQKRRNCC----YKTNSHGESVKTLYFSYL- 383
Query: 722 PEDAALAEKLAMHIA 736
A+ +K+A H+A
Sbjct: 384 ----AVLQKVANHVA 394
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 374 (136.7 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 112/354 (31%), Positives = 175/354 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q GLRWL SL+ GIL D+MGLGKT+Q+ + L ++ + LVV
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ-YELQYVLQDKGVLLTTYDIVRNNSK 509
P ++L W E+ S Y GT + R+ ++ Q V Q VLLTTY+ + N
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHD 869
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569
+ S W Y+I+DEGH IKN S + L S+HR++++GTP+QNN
Sbjct: 870 RPKLSKIH----------WHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNN 919
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA----LDREKRIGSAVAKELRER 625
L+ELWAL NF P + ++ F + + P + A L E+ + + L +
Sbjct: 920 LEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENL--LIINRLHQV 977
Query: 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV--LSAF 683
++P+ LRRLK++V +E L +K E RL C+ Y+ L + L +
Sbjct: 978 LRPFVLRRLKHKVENE--------LPEKIE-----RLIRCEASAYQKLLMKRVEDNLGSI 1024
Query: 684 DGSPLAAL--TI--LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAM 733
+ A+ ++ L+ IC+HP L ++ +E+V + + P L KL M
Sbjct: 1025 GNAKSRAVHNSVMELRNICNHPYL-SQLHSEEVNNIIPKHFLPPIVRLCGKLEM 1077
Score = 279 (103.3 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 57/133 (42%), Positives = 87/133 (65%)
Query: 759 LSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L +LD+++P+ H VL FS ++L+++++ + KGYK+LR+DG T DR +++
Sbjct: 1075 LEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDG 1134
Query: 815 FQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F + G IFLL+ + GG+G+ L AD VI+ D WNP D Q+ RA+RIGQKKDV+V
Sbjct: 1135 FNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLV 1194
Query: 874 YRLMTCGTVEEKI 886
R T +VEE++
Sbjct: 1195 LRFETVNSVEEQV 1207
Score = 38 (18.4 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 263 FESNLDGEEDGGSLSEVEGDEHLSRVHE 290
F+SN + + LSE E ++R+H+
Sbjct: 949 FQSNGESSAEEALLSEEENLLIINRLHQ 976
Score = 37 (18.1 bits), Expect = 6.5e-51, Sum P(3) = 6.5e-51
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 998 SSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISN 1053
SS SY+ + A P +K+ S ++E K D +E I S+ +N
Sbjct: 2040 SSLSYVRSEPTASASTTAEPLPTDKLEKNISFQDEVKTLNGDKREAILLSSEEQTN 2095
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 363 (132.8 bits), Expect = 7.2e-51, Sum P(4) = 7.2e-51
Identities = 104/323 (32%), Positives = 159/323 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL W+ SL+ GIL D+MGLGKT+Q F+ L + + L++
Sbjct: 865 VGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLII 924
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L++WI E S K Y G + + Q + VLLTT++ + +
Sbjct: 925 VPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYIIKDRPL 984
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTPIQNN 569
L S I W +MI+DEGH IKN ++ +L S +R+I++GTP+QNN
Sbjct: 985 L---SRIK---------WVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNN 1032
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L+ E+ + + K L + ++
Sbjct: 1033 LPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEAL--LIIKRLHKVLR 1090
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA-------FLNSEIVL 680
P+ RRLK +V E L K E ++ L+ Q +LY+ F++ E
Sbjct: 1091 PFLFRRLKKDVEKE--------LPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGK 1142
Query: 681 SAFDGSPLAALTILKKICDHPLL 703
+ G + LKKIC+HP +
Sbjct: 1143 TGIKGLQNTVMQ-LKKICNHPFI 1164
Score = 284 (105.0 bits), Expect = 7.2e-51, Sum P(4) = 7.2e-51
Identities = 58/139 (41%), Positives = 93/139 (66%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ GH L+F Q +++ ++++ + SK +K+LR+DG+TK+ DR ++ F
Sbjct: 1191 LLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFN 1250
Query: 817 E--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 874
+ DV IF+L+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ K+V +
Sbjct: 1251 DPKSDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRIL 1309
Query: 875 RLMTCGTVEEKIYRKQIFK 893
RL+T ++EE I + +K
Sbjct: 1310 RLITEKSIEENILSRAQYK 1328
Score = 40 (19.1 bits), Expect = 7.2e-51, Sum P(4) = 7.2e-51
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1023 NKKSSSPKNEAKLKESDIKERIKRLSQ 1049
N++ S +AKL E +KE I+ L +
Sbjct: 1599 NEEHSIVYEDAKLMEKTLKEVIEDLEK 1625
Score = 39 (18.8 bits), Expect = 7.2e-51, Sum P(4) = 7.2e-51
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 9 VKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRD 59
V + + +T C + H H+E EEK ++++ R+RL + + D
Sbjct: 734 VDKQNKAKTQRCKDIINFHAHLEK-----EEK-KRIERSARQRLQALRADD 778
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 314 (115.6 bits), Expect = 8.4e-51, Sum P(4) = 8.4e-51
Identities = 84/286 (29%), Positives = 141/286 (49%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + + LV P
Sbjct: 221 GGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGP 280
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLR 512
+ L +W+ E Y GT + R+ ++ + + KG L ++ + ++R
Sbjct: 281 LSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKL-VKNIHKRKGTLQIHPVVITSFEIAMR 339
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
D W Y+I+DEGH IKN + + L + ++++++GTP+QNNL E
Sbjct: 340 ------DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSE 393
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
LW+L NF P++ D K F+ +++ L + + +E+ V L + + P+ LR
Sbjct: 394 LWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE--QNVLHMLHQILTPFLLR 451
Query: 633 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
RLK++V E + K E++V+ L+ Q Y A +N I
Sbjct: 452 RLKSDVALE--------VPPKREVVVYAPLSKKQEIFYTAIVNRTI 489
Score = 306 (112.8 bits), Expect = 8.4e-51, Sum P(4) = 8.4e-51
Identities = 71/198 (35%), Positives = 113/198 (57%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
+LD+++PE GH VL+FSQ +ML+++ + + + F R+DG+ S+R K ++ F
Sbjct: 604 ILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFN 663
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
IFL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL
Sbjct: 664 TDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 723
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL--PKQGFDVSLTQQQ 934
+T T+++KI + K L K HK + Q L + + PK+ ++ ++
Sbjct: 724 VTANTIDQKIVERAAAKRKLEKLII-HKNHFKG-GQSGLNQSKNFLDPKELMELLKSRDY 781
Query: 935 LHEEHGDQHNM--DESLE 950
E G + + D+ LE
Sbjct: 782 EREVKGSREKVISDKDLE 799
Score = 47 (21.6 bits), Expect = 8.4e-51, Sum P(4) = 8.4e-51
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG-SLSEV 279
+ EE K + + ++ET V G +N + N V R+ G ED +++EV
Sbjct: 90 QLEEQKKKEKLERKKETLKVTKG--KNSIGASEENPVVTRKK-----RGREDESYNIAEV 142
Query: 280 EGDEHLSRVHETKKHHQRQKKN 301
E + V + K QK++
Sbjct: 143 MSKEEILSVAKKNKKENEQKES 164
Score = 43 (20.2 bits), Expect = 8.4e-51, Sum P(4) = 8.4e-51
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP L+
Sbjct: 565 MMLLRKCCNHPYLI 578
Score = 38 (18.4 bits), Expect = 7.2e-50, Sum P(4) = 7.2e-50
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 38 EEKPQKVKIEGRRRLCKVSS--RDVDNTENRAVV 69
EE+ +K K+E ++ KV+ + +E VV
Sbjct: 92 EEQKKKEKLERKKETLKVTKGKNSIGASEENPVV 125
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 340 (124.7 bits), Expect = 9.1e-51, Sum P(4) = 9.1e-51
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 9.1e-51, Sum P(4) = 9.1e-51
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 50 (22.7 bits), Expect = 9.1e-51, Sum P(4) = 9.1e-51
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 9.1e-51, Sum P(4) = 9.1e-51
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 340 (124.7 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 50 (22.7 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 340 (124.7 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 49 (22.3 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQPAQPPNLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 307 (113.1 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 463 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 521
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 522 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 581
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 582 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 629
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 630 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 684
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 685 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 714
Score = 270 (100.1 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 802 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 861
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 862 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 921
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 922 YRLVTKGSVEEDILER 937
Score = 81 (33.6 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 685 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 731
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 732 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 777
Score = 73 (30.8 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 29/112 (25%), Positives = 47/112 (41%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEEDGGSLSEV 279
E + S +D D E + K + W + S +S +S + E D S E
Sbjct: 121 EEDSSSSEDSDDSSSEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDET 176
Query: 280 EGD-EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
E D E ++V K ++ + KN K + +R Q + EE DDE++
Sbjct: 177 ESDYEPKNKVKSRKPQNRSKSKNGKKIIGQKKR---Q--IDSSEEEDDDEEE 223
Score = 54 (24.1 bits), Expect = 4.7e-48, Sum P(6) = 4.7e-48
Identities = 20/86 (23%), Positives = 40/86 (46%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E+E + S + D+ E ++ + KPQ + K + +++ R +D++E D
Sbjct: 163 ESEEERDKSSCDETESDY-EPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEED--D 219
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE ++D+ +S A VN+
Sbjct: 220 DEE------EYDNDKRSSRRQATVNV 239
Score = 50 (22.7 bits), Expect = 2.8e-21, Sum P(4) = 2.8e-21
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 430 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 488
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 489 EGLELRDYQLNGLN 502
Score = 44 (20.5 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKER 1043
N R++K K K + +KE D KE+
Sbjct: 1425 NKRELKREIKEKEDKKD--IKEKDFKEK 1450
Score = 44 (20.5 bits), Expect = 1.2e-47, Sum P(5) = 1.2e-47
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES D D+ G G D S+ +S S+ D + GS
Sbjct: 8 ESVRNSSGESSQSD--DDSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSDSGSESGS 60
Query: 276 LSEVEGD 282
SE E D
Sbjct: 61 QSESESD 67
Score = 43 (20.2 bits), Expect = 1.5e-50, Sum P(5) = 1.5e-50
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1018 RDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKA 1055
+DIK +K K E K+KE+ KE+ + +L +K+
Sbjct: 1440 KDIK--EKDFKEKRENKVKEAIQKEKDIKEEKLSESKS 1475
Score = 42 (19.8 bits), Expect = 2.0e-50, Sum P(5) = 2.0e-50
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1024 KKSSSPKNEAKLKES--DIKERIK 1045
KK K EAK KE+ ++K IK
Sbjct: 1411 KKEPEEKREAKEKENKRELKREIK 1434
Score = 40 (19.1 bits), Expect = 3.0e-47, Sum P(5) = 3.0e-47
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 253 DNNLVSARESFESNLDGEE---DGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG 309
DN+ + ++ +DG E S+ V+ L + + ++ HQ + +
Sbjct: 67 DNSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHQASSNSGSEEDSSS 126
Query: 310 ERFNGQSFVSGGREEYDDED 329
+ S R+++ DED
Sbjct: 127 SEDSDDSSSEVKRKKHKDED 146
Score = 38 (18.4 bits), Expect = 5.0e-50, Sum P(5) = 5.0e-50
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1652 QYHDHHKDRHQGD 1664
Score = 38 (18.4 bits), Expect = 5.0e-50, Sum P(5) = 5.0e-50
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNK 1054
K +KK K+ + +E+ +KE I++ + K
Sbjct: 1436 KEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK 1469
Score = 38 (18.4 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEH 284
LK+ + + + S S E + E+ S SEV+ +H
Sbjct: 102 LKKQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKH 142
Score = 38 (18.4 bits), Expect = 3.0e-19, Sum P(4) = 3.0e-19
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 740 EKDDFQEQHDN 750
E+DD +E++DN
Sbjct: 216 EEDDDEEEYDN 226
Score = 37 (18.1 bits), Expect = 4.7e-48, Sum P(6) = 4.7e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 427 GLPYSECSWEDGALISKK--FQACID 450
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 340 (124.7 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 802 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 855
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 856 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 910 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 967
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 968 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1019
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYM 1043
Score = 299 (110.3 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1076 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1135
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1136 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1195
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1196 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1240
Score = 48 (22.0 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 648 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 707
Query: 327 DE 328
DE
Sbjct: 708 DE 709
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 441 EARITEKLEKQQKIEQERKRR 461
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 340 (124.7 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 48 (22.0 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 340 (124.7 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 48 (22.0 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 340 (124.7 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 48 (22.0 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 340 (124.7 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1027
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHPYM 1051
Score = 299 (110.3 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 68/166 (40%), Positives = 102/166 (61%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1084 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1248
Score = 48 (22.0 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 656 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 715
Query: 327 DE 328
DE
Sbjct: 716 DE 717
Score = 37 (18.1 bits), Expect = 1.3e-50, Sum P(4) = 1.3e-50
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 449 EARITEKLEKQQKIEQERKRR 469
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 314 (115.6 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 68/169 (40%), Positives = 102/169 (60%)
Query: 744 FQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRI 799
F+ D + F+L LD+++PE GH VL+FSQ ML+++ + +G+KF R+
Sbjct: 588 FKVDEDLVKNSGKFLL--LDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRL 645
Query: 800 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859
DG+ SDR + ++ F +FL++++ GGLG+ LT AD VI+ D WNP +D Q+
Sbjct: 646 DGSMSYSDREENMHQFNNDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQ 705
Query: 860 DRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIR 908
DR +RIGQ K VVVYRL+T T+++KI + K L K HK Q +
Sbjct: 706 DRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII-HKNQFK 753
Score = 311 (114.5 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 85/291 (29%), Positives = 145/291 (49%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + + LV P
Sbjct: 219 GGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGP 278
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ-----YELQYVLQDKGVLLTTYDIVRNN 507
+ L +W+ E + Y G + R+ + Q L+ V++T+++I +
Sbjct: 279 LSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRKIHGRQGSLKIHPVVITSFEIAMRD 338
Query: 508 SKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQ 567
+L+ S F W Y+I+DEGH IKN + + + L + ++++++GTP+Q
Sbjct: 339 RNALQ-SCF-----------WKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQ 386
Query: 568 NNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627
NNL ELW+L NF P++ D K F+ +++ + + + +EK + L + +
Sbjct: 387 NNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKE--QNILHMLHQILT 444
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
P+ LRRLK++V E + K E++V+ L Q Y A +N I
Sbjct: 445 PFLLRRLKSDVALE--------VPPKREVVVYAPLAKKQETFYTAIVNRTI 487
Score = 47 (21.6 bits), Expect = 2.0e-23, Sum P(4) = 2.0e-23
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 532 ILDEGHLIKNPST-QRAKS--LLEIPSAHRIIISGTPIQNNLKELW-ALFNFCCPELLGD 587
IL H I P +R KS LE+P +++ P+ + + A+ N LLG+
Sbjct: 435 ILHMLHQILTPFLLRRLKSDVALEVPPKREVVVYA-PLAKKQETFYTAIVNRTIRNLLGN 493
Query: 588 NKWFKEKYEL 597
N+ +E EL
Sbjct: 494 NE--EEVVEL 501
Score = 43 (20.2 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP L+
Sbjct: 564 MMLLRKCCNHPYLI 577
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 38 EEKPQKVKIEGRRRLCKVSSRD---VDNTENRAVVDDEPNFSDITDFDSPLQSK 88
EE+ +K K+E +R + S++ D E ++ + D T S + SK
Sbjct: 91 EEQKRKEKLEKKREMMLKSAKGQNPADGKEEKSATKKKRGRDDGTYNISEIMSK 144
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 315 (115.9 bits), Expect = 2.1e-50, Sum P(4) = 2.1e-50
Identities = 103/409 (25%), Positives = 184/409 (44%)
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVS---GGREEYDDEDDC 331
SL +G + E ++++ E + + E + + +S ++E ++E C
Sbjct: 106 SLKVTKGKNSIDASEENTVVMRKKRGREDESYNISEVMSKEEILSVAKKNKKETENESSC 165
Query: 332 VIVSGKLVVNRPDRRDGK-LNKSAHSGLVNVLDDYSDDSVLEDEGS-ITLSGPRSTYMLP 389
S V + RD + K S V + D V + G + P+
Sbjct: 166 ---SNLCVEDLQKNRDSNSIIKDRLSQTVRQNTKFFFDPVRKCNGQPVPFQQPKHF---- 218
Query: 390 GKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALV 449
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + + LV
Sbjct: 219 --TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLV 276
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSK 509
P + L +W+ E Y G+ + R+ + ++ + KG L ++ +
Sbjct: 277 CGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKL-VNHIHKRKGTLQIHPVVITSFEI 335
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569
++R + + W Y+I+DEGH IKN + + L + ++++++GTP+QNN
Sbjct: 336 AMRDRNVLQH------CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNN 389
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELW+L NF P++ D K F+ +++ L + + +E+ V L + + P+
Sbjct: 390 LSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE--QNVLHMLHQILTPF 447
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
LRRLK++V E + K E++V+ L+ Q Y A +N I
Sbjct: 448 LLRRLKSDVALE--------VPPKREVVVYAPLSKKQEVFYTAIVNRTI 488
Score = 303 (111.7 bits), Expect = 2.1e-50, Sum P(4) = 2.1e-50
Identities = 70/198 (35%), Positives = 113/198 (57%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
+LD+++PE GH VL+FSQ +ML+++ + + + F R+DG+ ++R K ++ F
Sbjct: 603 ILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFN 662
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
IFL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL
Sbjct: 663 TDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL--PKQGFDVSLTQQQ 934
+T T+++KI + K L K HK + Q L + + PK+ ++ ++
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKLII-HKNHFKG-GQSGLNQSKNFLDPKELMELLKSRDY 780
Query: 935 LHEEHGDQHNM--DESLE 950
E G + + D+ LE
Sbjct: 781 EREVKGSREKVISDKDLE 798
Score = 45 (20.9 bits), Expect = 2.1e-50, Sum P(4) = 2.1e-50
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 38 EEKPQKVKIEGRRRLCKVSS--RDVDNTENRAVV 69
EE+ +K K+E ++ KV+ +D +E VV
Sbjct: 92 EEQKKKEKLERKKESLKVTKGKNSIDASEENTVV 125
Score = 43 (20.2 bits), Expect = 2.1e-50, Sum P(4) = 2.1e-50
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP L+
Sbjct: 564 MMLLRKCCNHPYLI 577
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 340 (124.7 bits), Expect = 2.4e-50, Sum P(4) = 2.4e-50
Identities = 97/325 (29%), Positives = 172/325 (52%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q +GL+W+ SL+ GIL D+MGLGKT+Q ++ L + LVV
Sbjct: 1708 GGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKKNNGPFLVVV 1767
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTC-VKTRQYELQYVLQDK-GVLLTTYDIVRNNSK 509
P + LS+W +E + K Y+G + ++E +++ + ++TTY+ + +
Sbjct: 1768 PLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKFE-EFIAPGQFNAVVTTYEYIIKDKN 1826
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQN 568
+L S I W+Y+I+DEGH +KN +++ + L S +R++++GTP+QN
Sbjct: 1827 AL---SKIK---------WNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQN 1874
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
+L ELWAL NF P + + F++ + P + +K ++ E+++ + + L + ++P
Sbjct: 1875 SLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQL--LIIQRLHKVLRP 1932
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSA-FD 684
+ LRRLK EV A L K E ++ +++ Q ++Y+ S++ S D
Sbjct: 1933 FLLRRLKKEV--------EAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGAD 1984
Query: 685 GSPLAALTI------LKKICDHPLL 703
G+P A + L+KIC+HP L
Sbjct: 1985 GNPKLAKGLKNTYVQLRKICNHPYL 2009
Score = 304 (112.1 bits), Expect = 2.4e-50, Sum P(4) = 2.4e-50
Identities = 72/183 (39%), Positives = 109/183 (59%)
Query: 742 DDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
DD DN+ + + LLD+L+P+ GH VLIFSQ +++N+++ K YKFL
Sbjct: 2012 DDEYNIDDNL-IRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFL 2070
Query: 798 RIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DG+TK+ +R ++ F + IF+L+++ GGLGL L AD VI+ D WNP D
Sbjct: 2071 RLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDL 2130
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 916
Q+ DRA+RIGQK+ V V RL+T +VEE I + FK L K + + ++ D +
Sbjct: 2131 QAQDRAHRIGQKQTVRVLRLVTAHSVEESILARANFKKELDKKIIQAGQFNNKSNRSDRK 2190
Query: 917 ELL 919
++L
Sbjct: 2191 KML 2193
Score = 52 (23.4 bits), Expect = 2.4e-50, Sum P(4) = 2.4e-50
Identities = 16/84 (19%), Positives = 38/84 (45%)
Query: 205 GVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFE 264
G +D++G + D+ E+ D+ + N + +K + + D N ++E E
Sbjct: 1557 GDDEDDIG--LNDNKDD-EKITNDNTTTTTSASSNTDVIMKNDSGQHTDKN---SKEIQE 1610
Query: 265 SNLDGEEDGGSLSEVEGDEHLSRV 288
+ +D + ++GD++ S +
Sbjct: 1611 KKDNDNKDQSKATTIDGDDNSSNI 1634
Score = 46 (21.3 bits), Expect = 9.9e-50, Sum P(4) = 9.9e-50
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 283 EHLSRVHETKKHHQRQKKNEPKRVHDGER 311
EHL + + Q+Q + +P++V E+
Sbjct: 1033 EHLQQPENLQPQPQQQSQQQPEQVQSSEQ 1061
Score = 45 (20.9 bits), Expect = 1.3e-49, Sum P(4) = 1.3e-49
Identities = 43/187 (22%), Positives = 80/187 (42%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHD-HVESRSVIDEEKPQKVKIEGR-RRLC--KVSSRD 59
D K+ K+ TND + D D + +R + + K V+ L K D
Sbjct: 1433 DAKQSEKISIMNITNDVDI---DTDGNTTNRDLSNNSKSPLVRSSNPISNLLNGKDDDDD 1489
Query: 60 VDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPK 119
DN +N ++DD N ++ +++++ + + N + ++ ++ D+ K
Sbjct: 1490 DDNDDNNQMLDDNNNNNN-SNYNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNDNGNK 1545
Query: 120 AKTVSENDNYKGGNEIRDI-LNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQG 178
K VS N+ G++ DI LND + E ++ D + D ++KN D+GQ
Sbjct: 1546 PK-VSINNQGGYGDDEDDIGLND-NKDDEKITNDNTTTTTSASSNTDV--IMKN-DSGQH 1600
Query: 179 SKGNLPE 185
+ N E
Sbjct: 1601 TDKNSKE 1607
Score = 45 (20.9 bits), Expect = 2.9e-19, Sum P(4) = 2.9e-19
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 592 KEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV-FHEDDVTSSATL 650
KE+ E I R D+ L ++++ G AK+ E+I + + N+V D T++ L
Sbjct: 1407 KEENEEAIRRQQDQLLLQQKEKEGEEDAKQ-SEKIS---IMNITNDVDIDTDGNTTNRDL 1462
Query: 651 SKKNE 655
S ++
Sbjct: 1463 SNNSK 1467
Score = 41 (19.5 bits), Expect = 7.3e-19, Sum P(4) = 7.3e-19
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 620 KELRERIQPYF-LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRL---TSCQRQLYEAFLN 675
K++ +R+ YF L+ K + E + K N+ +L+L T QR L E F
Sbjct: 1327 KKMTKRVTAYFILQEKKEQQQREREERERLRALKTNDESKYLKLLEQTKNQR-LRELFDQ 1385
Query: 676 SEIVLSAFDGS-PLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLA-M 733
+ L ++I +K + + +R + +L EDA +EK++ M
Sbjct: 1386 TNEFLDKISHLLQKEKISIQEKEENEEAI--RRQQDQLLLQQKEKEGEEDAKQSEKISIM 1443
Query: 734 HIADVAEKD 742
+I + + D
Sbjct: 1444 NITNDVDID 1452
Score = 40 (19.1 bits), Expect = 2.4e-50, Sum P(4) = 2.4e-50
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 1017 PRDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKAW 1056
P D ++N+ + E +L E+ KER++ I K W
Sbjct: 2211 PTDSQINEMIARSPEEFELYENMDKERME-----IDQKKW 2245
Score = 38 (18.4 bits), Expect = 6.7e-49, Sum P(4) = 6.7e-49
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 283 EHLSRVHETKKHHQRQKKN-EPK 304
EHL + + ++ H +Q +N +P+
Sbjct: 1022 EHLQQQQQQQQEHLQQPENLQPQ 1044
Score = 38 (18.4 bits), Expect = 3.6e-19, Sum P(4) = 3.6e-19
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 306 VHDGER-FNGQSFVSGGREEYDDEDDCVIVSGKLVVNRP 343
V D E+ FN +G + E ++E+ +I+ V RP
Sbjct: 1894 VEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRLHKVLRP 1932
Score = 37 (18.1 bits), Expect = 4.8e-50, Sum P(4) = 4.8e-50
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1014 AFNPRDIKLNKKSSSPKNEAKLK---ESDIKERIKRLSQLISNKAWL 1057
A +P + +L + + E K E+ K KRLSQ +W+
Sbjct: 2221 ARSPEEFELYENMDKERMEIDQKKWDEAGKKGEAKRLSQEDEIPSWI 2267
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 319 (117.4 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 85/286 (29%), Positives = 141/286 (49%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 452
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + + LV P
Sbjct: 220 GGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGP 279
Query: 453 KTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLR 512
+ L +W+ E Y GT + RQ ++ + + KG L ++ + ++R
Sbjct: 280 LSTLPNWMAEFKRFTPDIPTMLYHGT-QEERQKLVRNIYKRKGTLQIHPVVITSFEIAMR 338
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
D W Y+I+DEGH IKN + + L + ++++++GTP+QNNL E
Sbjct: 339 ------DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSE 392
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
LW+L NF P++ D K F+ +++ L + + +E+ V L + + P+ LR
Sbjct: 393 LWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE--QNVLHMLHQILTPFLLR 450
Query: 633 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
RLK++V E + K E++V+ L+ Q Y A +N I
Sbjct: 451 RLKSDVALE--------VPPKREVVVYAPLSKKQEIFYTAIVNRTI 488
Score = 300 (110.7 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 71/197 (36%), Positives = 112/197 (56%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
+LD+++PE GH VL+FSQ ML+++ + + + F R+DG+ S+R K ++ F
Sbjct: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
IFL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL
Sbjct: 663 TDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF-SQQDLRELLSLPKQGFDVSLTQQQL 935
+T T+++KI + K L K HK + S +L + PK+ ++ ++
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKLII-HKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYE 781
Query: 936 HEEHGDQHNM--DESLE 950
E G + + D+ LE
Sbjct: 782 REIKGSREKVISDKDLE 798
Score = 43 (20.2 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP L+
Sbjct: 564 MMLLRKCCNHPYLI 577
Score = 43 (20.2 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 38 EEKPQKVKIEGRRRLCKVSS--RDVDNTENRAVVDDEPNFSDITDFDSPLQSK 88
EE+ +K K+E ++ KV +D +E + V+ + D + S + SK
Sbjct: 92 EEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSK 144
Score = 39 (18.8 bits), Expect = 6.4e-50, Sum P(4) = 6.4e-50
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 130 KGGNEIRDI-LNDLSARLEILSIDKRRVPKTVDPEDDFSRLV-----KNGDTGQGSKGNL 183
K G E ++++ ++ EILS+ K+ + D + L KN D+ K L
Sbjct: 128 KRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRL 187
Query: 184 PE 185
E
Sbjct: 188 SE 189
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 344 (126.2 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 113/368 (30%), Positives = 181/368 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGL----FHSR 442
+ L HQREG+++++ K G IL DDMGLGKT+Q L L FH +
Sbjct: 129 LAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQSITVLYTLLKQGFHKK 188
Query: 443 L-IKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTY 501
++R L++ P +L+++W E++ + + TCV E + V + +G Y
Sbjct: 189 CAVRRCLILCPASLINNWNDEISK-WIPNRCNV---TCVNDNAKE-KIVSKLEGF---KY 240
Query: 502 DIVRNNSKSLRGSSF-ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
DI ++ F I++E D +I D +I DE H +KN T+ S+ + + R++
Sbjct: 241 DI-QSTVLICSYECFRINNEFLDKSSI-DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLL 298
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
+SGTPIQN+L E +AL + C P+L D F++K+ PIL G DK A ++E+ I S
Sbjct: 299 LSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLT 358
Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
EL + LRR N + S L K + ++++L Q LY FL + +L
Sbjct: 359 ELSNITNKFILRRTNNLL--------SKVLPVKYLINIFIKLNPIQEALYVLFLKDKKIL 410
Query: 681 SAFDGSPLAALTI----LKKICDHPLLLTKRAAEDVLDGMDSMLNP-EDAALAEKLAMHI 735
+ + + I L+KIC+HPLLL +++ G ++ ED + M I
Sbjct: 411 KNDNTNNKVNVLINIKKLEKICNHPLLLNVNDIKEI--GQVTLWKLIEDVIFEMQTNMKI 468
Query: 736 ADVAEKDD 743
+ K D
Sbjct: 469 CNRGNKRD 476
Score = 293 (108.2 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 69/186 (37%), Positives = 107/186 (57%)
Query: 741 KDDFQEQHDNISCKISFILSLLDKLIPEGHN--VLIFSQTRKMLNLIQESIGSKGYKFLR 798
K D + N SCK +L L K I + N V+I S + L+ ++ YKF+R
Sbjct: 598 KRDIYRSYYNFSCKF-LLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVR 656
Query: 799 IDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858
+DG R K++NDF IFLL+S+ GG G+ L ++R+I++DP WNP+ D Q+
Sbjct: 657 LDGGINIKKRHKVINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQA 716
Query: 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK---TATE-HKEQIRYFSQQD 914
+ R +R GQKK +YRL GT++EK+Y++QI K GL T T K+Q+ S ++
Sbjct: 717 LARVWREGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQM---SDEN 773
Query: 915 LRELLS 920
+++L +
Sbjct: 774 VKKLFN 779
Score = 39 (18.8 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 231 ADEEQETENVGIGLKRNEP 249
+DE +E E + +K++EP
Sbjct: 94 SDETEEQEKIEEVIKKHEP 112
Score = 38 (18.4 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 119 KAKTVSENDNYKGGNEIRDILND 141
K+ + N+N K GN++ + N+
Sbjct: 491 KSMSSISNNNMKNGNDMNNTNNN 513
Score = 37 (18.1 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 212 GGVVESVADEYEESK 226
G V S DEYEE++
Sbjct: 6 GNVKRSRDDEYEENE 20
Score = 37 (18.1 bits), Expect = 8.1e-24, Sum P(4) = 8.1e-24
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 746 EQHDNISC 753
E HDNI C
Sbjct: 787 ETHDNIEC 794
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 344 (126.2 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 113/368 (30%), Positives = 181/368 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGL----FHSR 442
+ L HQREG+++++ K G IL DDMGLGKT+Q L L FH +
Sbjct: 129 LAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQSITVLYTLLKQGFHKK 188
Query: 443 L-IKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTY 501
++R L++ P +L+++W E++ + + TCV E + V + +G Y
Sbjct: 189 CAVRRCLILCPASLINNWNDEISK-WIPNRCNV---TCVNDNAKE-KIVSKLEGF---KY 240
Query: 502 DIVRNNSKSLRGSSF-ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
DI ++ F I++E D +I D +I DE H +KN T+ S+ + + R++
Sbjct: 241 DI-QSTVLICSYECFRINNEFLDKSSI-DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLL 298
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
+SGTPIQN+L E +AL + C P+L D F++K+ PIL G DK A ++E+ I S
Sbjct: 299 LSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLT 358
Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
EL + LRR N + S L K + ++++L Q LY FL + +L
Sbjct: 359 ELSNITNKFILRRTNNLL--------SKVLPVKYLINIFIKLNPIQEALYVLFLKDKKIL 410
Query: 681 SAFDGSPLAALTI----LKKICDHPLLLTKRAAEDVLDGMDSMLNP-EDAALAEKLAMHI 735
+ + + I L+KIC+HPLLL +++ G ++ ED + M I
Sbjct: 411 KNDNTNNKVNVLINIKKLEKICNHPLLLNVNDIKEI--GQVTLWKLIEDVIFEMQTNMKI 468
Query: 736 ADVAEKDD 743
+ K D
Sbjct: 469 CNRGNKRD 476
Score = 293 (108.2 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 69/186 (37%), Positives = 107/186 (57%)
Query: 741 KDDFQEQHDNISCKISFILSLLDKLIPEGHN--VLIFSQTRKMLNLIQESIGSKGYKFLR 798
K D + N SCK +L L K I + N V+I S + L+ ++ YKF+R
Sbjct: 598 KRDIYRSYYNFSCKF-LLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVR 656
Query: 799 IDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858
+DG R K++NDF IFLL+S+ GG G+ L ++R+I++DP WNP+ D Q+
Sbjct: 657 LDGGINIKKRHKVINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQA 716
Query: 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK---TATE-HKEQIRYFSQQD 914
+ R +R GQKK +YRL GT++EK+Y++QI K GL T T K+Q+ S ++
Sbjct: 717 LARVWREGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQM---SDEN 773
Query: 915 LRELLS 920
+++L +
Sbjct: 774 VKKLFN 779
Score = 39 (18.8 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 231 ADEEQETENVGIGLKRNEP 249
+DE +E E + +K++EP
Sbjct: 94 SDETEEQEKIEEVIKKHEP 112
Score = 38 (18.4 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 119 KAKTVSENDNYKGGNEIRDILND 141
K+ + N+N K GN++ + N+
Sbjct: 491 KSMSSISNNNMKNGNDMNNTNNN 513
Score = 37 (18.1 bits), Expect = 3.6e-50, Sum P(4) = 3.6e-50
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 212 GGVVESVADEYEESK 226
G V S DEYEE++
Sbjct: 6 GNVKRSRDDEYEENE 20
Score = 37 (18.1 bits), Expect = 8.1e-24, Sum P(4) = 8.1e-24
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 746 EQHDNISC 753
E HDNI C
Sbjct: 787 ETHDNIEC 794
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 313 (115.2 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 92/289 (31%), Positives = 140/289 (48%)
Query: 354 AHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML--PGKIGNMLFPHQREGLRWLWSLH 411
A SG V + D +L+DE G T P I + +Q GL WL SLH
Sbjct: 145 ASSGRVRRTEAEEDAELLKDEKH---GGSAETVFRESPAFIQGTMRDYQIAGLNWLISLH 201
Query: 412 CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSA 470
G GIL D+MGLGKT+Q FL L H I LV+ PK+ L +W +E
Sbjct: 202 ENGISGILADEMGLGKTLQTISFLGYLRHIMGITGPHLVIVPKSTLDNWKREFGKWTPEV 261
Query: 471 KIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWD 529
+ G + + ++ + V +T+Y+++ LR S + A W+
Sbjct: 262 NVLVLQGAKEERAALIAERLVDESFDVCITSYEMI------LREKSHLKKFA------WE 309
Query: 530 YMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNK 589
Y+I+DE H IKN + A+ + S +R++I+GTP+QNN+ ELWAL NF P++ GD++
Sbjct: 310 YIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGDSE 369
Query: 590 WFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
F + + G D V ++L ++P+ LRR+K +V
Sbjct: 370 AFDQWFSG---EGQDS----------DTVVQQLHRVLRPFLLRRVKADV 405
Score = 301 (111.0 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 67/176 (38%), Positives = 106/176 (60%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L +G VLIFSQ ++L+++++ + YK+ RIDG T DR+
Sbjct: 489 SGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAA 548
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++++ + G +FLLT++ GGLG+ LT AD VI+ D WNP D Q++DRA+RIGQ K
Sbjct: 549 IDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQ 608
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH-KEQIRYFSQQDLRELLSLPKQG 925
V VYR + T+EEK+ + K L + + + Q+ + + ELLS+ + G
Sbjct: 609 VYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQQGRAQVAAKAAANKDELLSMIQHG 664
Score = 234 (87.4 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 61/183 (33%), Positives = 99/183 (54%)
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
W+Y+I+DE H IKN + A+ + S +R++I+GTP+QNN+ ELWAL NF P++ GD
Sbjct: 308 WEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGD 367
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
++ F + + G D V ++L ++P+ LRR+K +V
Sbjct: 368 SEAFDQWFSG---EGQDS----------DTVVQQLHRVLRPFLLRRVKADV-------EK 407
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VLSAFDG---SPLAALTI---LKKICDH 700
+ L KK E+ ++L++T QR Y+ L +I ++ +G S L I L+K C+H
Sbjct: 408 SLLPKK-EVNLYLKMTEMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNH 466
Query: 701 PLL 703
P L
Sbjct: 467 PYL 469
Score = 41 (19.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 887 YRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMD 946
Y K I G EH+ ++ R L K + VS T ++++ E D+ +
Sbjct: 923 YIKTIEDGEEKLRKIEHQRKMLRKKMSQYRVPLQQLKINYSVSTTNKKVYTEEEDRFLLV 982
Query: 947 ESLEAHIQFLDTLGI 961
+ L+ H +D+ GI
Sbjct: 983 Q-LDKH--GIDSDGI 994
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 309 (113.8 bits), Expect = 7.0e-50, Sum P(5) = 7.0e-50
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 451 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 509
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 510 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 569
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 570 MIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 617
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 618 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 672
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 673 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 702
Score = 270 (100.1 bits), Expect = 7.0e-50, Sum P(5) = 7.0e-50
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 790 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 849
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 850 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 909
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 910 YRLVTKGSVEEDILER 925
Score = 81 (33.6 bits), Expect = 7.0e-50, Sum P(5) = 7.0e-50
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 673 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 719
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 720 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 765
Score = 68 (29.0 bits), Expect = 7.0e-50, Sum P(5) = 7.0e-50
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEEDGGSLSEV 279
E + S +D D E + K + W + S +S +S + E + S E
Sbjct: 123 EEDSSSSEDSDDSSSEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDET 178
Query: 280 EGD-EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
E D E ++V K ++ + KN K + +R S E+YD++
Sbjct: 179 ESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDND 228
Score = 57 (25.1 bits), Expect = 3.9e-48, Sum P(6) = 3.9e-48
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E E + C D+ E ++ + KPQ + K + +++ R +D++E D
Sbjct: 167 EEEREKSSCDETESDY---EPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEED---D 220
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 221 DEE------DYDNDKRSSRRQATVNV 240
Score = 52 (23.4 bits), Expect = 3.1e-48, Sum P(5) = 3.1e-48
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 261 ESFESNLDGE-EDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF-NGQSFV 318
E ++ + G GS SE E + S ET+ ++ + K + ++ + + NG+ +
Sbjct: 147 EDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKIL 206
Query: 319 SGGREEYD--DEDD 330
+ + D +EDD
Sbjct: 207 GQKKRQIDSSEEDD 220
Score = 50 (22.7 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 418 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 476
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 477 EGLELRDYQLNGLN 490
Score = 45 (20.9 bits), Expect = 1.6e-47, Sum P(5) = 1.6e-47
Identities = 28/97 (28%), Positives = 38/97 (39%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES D D+ G G D S+ +S S+ D + GS
Sbjct: 8 ESVRNSSGESSQSD--DDSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSDSGSESGS 60
Query: 276 LSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
SE E D T + ++ Q K P +V DG F
Sbjct: 61 QSESESD--------TSRENKVQAK--PPKV-DGAEF 86
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(4) = 6.0e-17
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 737 DVAEKDDFQEQHDN 750
D +E+DD +E +DN
Sbjct: 214 DSSEEDDDEEDYDN 227
Score = 38 (18.4 bits), Expect = 7.0e-50, Sum P(5) = 7.0e-50
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1552 QYHDHHKDRHQGD 1564
Score = 37 (18.1 bits), Expect = 3.9e-48, Sum P(6) = 3.9e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 415 GLPYSECSWEDGALISKK--FQACID 438
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 543 (196.2 bits), Expect = 9.9e-50, P = 9.9e-50
Identities = 171/558 (30%), Positives = 282/558 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGG-----ILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q C L L+++
Sbjct: 155 LSNILRPHQREGVRFMYEC-VEGKKGDFNGCIMADEMGLGKTLQ-CVTLVWT----LLRQ 208
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRN 506
P I + V S+ ++ + K Q L + + G T ++
Sbjct: 209 GPESKPT------INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQ 262
Query: 507 NS--KSLRGSS--FISDEAGD--DDAIWDY----MILDEGHLIKNPSTQRAKSLLEIPSA 556
S S G+ IS E + + Y +I DEGH +KN ++L+ + +
Sbjct: 263 FSMTSSKLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTK 322
Query: 557 HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 616
R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + + E++
Sbjct: 323 RRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAI 382
Query: 617 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS 676
+EL + +RR N++ + L K EM++ ++LT+ Q QLY FLNS
Sbjct: 383 EKTQELIGLVDQCIIRRT-NQIL-------TKYLPIKFEMVICVKLTAIQLQLYTNFLNS 434
Query: 677 EIVLSAFDG-------SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAE 729
+ V + + LA +T LKKIC HP L+ ++ E G ++ N L
Sbjct: 435 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKI-EAKEKGFENSQN----VLP- 488
Query: 730 KLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQES 788
++ K+ E S K + +L + G++ V++ S + L+L ++
Sbjct: 489 ------SNYKPKEICPEW----SGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFEQL 538
Query: 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVD 847
+ Y F+R+DGT R K+V+ F + D +F+L+S+ GG GL L A+R+ + D
Sbjct: 539 ARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMFD 598
Query: 848 PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI 907
P WNP+ D Q++ R +R GQKK +YRL+ GT+EEKI ++Q K L T ++ E
Sbjct: 599 PDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIIDNNESS 658
Query: 908 -RYFSQQDLRELLSLPKQ 924
++F++ DL++L S ++
Sbjct: 659 EKHFTRDDLKDLFSFDQK 676
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 303 (111.7 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 90/281 (32%), Positives = 141/281 (50%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G L +Q GL WL C+G IL D+MG
Sbjct: 447 FKDCKVLKQRPRFVALKKQPSY-IGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMG 505
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 506 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRN 565
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ L+ SF+ G + W ++ +DE H
Sbjct: 566 MIRTHEWMHPQTKRLKFNILLTTYEIL------LKDKSFLG---GLN---WAFIGVDEAH 613
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 614 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 668
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 669 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 698
Score = 270 (100.1 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 786 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 845
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 846 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 905
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 906 YRLVTKGSVEEDILER 921
Score = 81 (33.6 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 669 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 715
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 716 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 761
Score = 67 (28.6 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 32/119 (26%), Positives = 49/119 (41%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDG-- 273
+S ++E S D D ET+ K + W + S + S+ + EEDG
Sbjct: 115 DSGSEEDSSSSEDSADDSSSETKKK----KHKDEDWQMSGSGSVSGT-GSDSESEEDGDK 169
Query: 274 GSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSF--VSGGREEYDDEDD 330
S E E D +++K R K PK G++ GQ + EE DD++D
Sbjct: 170 SSCEESESDYEPKNKVKSRKPPSRIK---PK---SGKKSTGQKKRQLDSSEEEEDDDED 222
Score = 57 (25.1 bits), Expect = 9.0e-49, Sum P(6) = 9.0e-49
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 114 FDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNG 173
+D + + N +YK E + +DL LE+ D VP+T ED+F + K
Sbjct: 223 YDKRGSRRQATVNVSYKEAEETKTDSDDL---LEVCGED---VPQT--EEDEFETIEKFM 274
Query: 174 DTGQGSKG 181
D+ G KG
Sbjct: 275 DSRIGRKG 282
Score = 47 (21.6 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 265 SNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREE 324
S+ G E+ S SE D+ S ETKK ++ K+E D + +G VSG +
Sbjct: 113 SSDSGSEEDSSSSEDSADDSSS---ETKK---KKHKDE-----DWQ-MSGSGSVSGTGSD 160
Query: 325 YDDEDD 330
+ E+D
Sbjct: 161 SESEED 166
Score = 47 (21.6 bits), Expect = 3.9e-21, Sum P(5) = 3.9e-21
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L +K A ++ SR P F D V P+ + + +Y GG+
Sbjct: 414 YSECSWEDGALIAKKFQARIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 472
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 473 ESLELRDYQLNGLN 486
Score = 44 (20.5 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1024 KKSSSPKNEAKLKESDIKERIK 1045
+K+ + KN K+K S IKE IK
Sbjct: 1330 RKTRNKKN--KMKASKIKEEIK 1349
Score = 44 (20.5 bits), Expect = 9.0e-49, Sum P(6) = 9.0e-49
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDD 71
E+E + S + D+ V + P ++K + ++ R +D++E DD
Sbjct: 162 ESEEDGDKSSCEESESDYEPKNKVKSRKPPSRIKPKSGKKSTGQKKRQLDSSEEEE--DD 219
Query: 72 EPNF 75
+ ++
Sbjct: 220 DEDY 223
Score = 43 (20.2 bits), Expect = 2.9e-47, Sum P(5) = 2.9e-47
Identities = 31/97 (31%), Positives = 39/97 (40%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES+ DD + G G D S+ +S S+ + + GS
Sbjct: 8 ESVRNSSGESRSDD---DSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSESGSESGS 59
Query: 276 LSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
SE E D SR KK Q Q K PK DG F
Sbjct: 60 QSESESDT--SR---EKK--QVQAK-PPKA--DGSEF 86
Score = 43 (20.2 bits), Expect = 2.4e-18, Sum P(5) = 2.4e-18
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 615 GSAVAKELRERIQPYFLR 632
G+ +AK+ + RI YF R
Sbjct: 422 GALIAKKFQARIDEYFSR 439
Score = 38 (18.4 bits), Expect = 3.6e-48, Sum P(6) = 3.6e-48
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1555 QYHDHHKDRHQGD 1567
Score = 38 (18.4 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 212 GGVVESVADEYEESKGDDVADEEQETE 238
G V + +D E GD + EE E++
Sbjct: 152 GSVSGTGSDSESEEDGDKSSCEESESD 178
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 301 (111.0 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 88/281 (31%), Positives = 138/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G L +Q GL WL C+G IL D+MG
Sbjct: 433 FKDCKVLKQRPRFVALKKQPSY-IGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMG 491
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 492 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 551
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 552 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 599
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 600 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 654
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 655 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 684
Score = 270 (100.1 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 772 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 831
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 832 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 891
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 892 YRLVTKGSVEEDILER 907
Score = 81 (33.6 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 655 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 701
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 702 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 747
Score = 67 (28.6 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEE-DGGSLSE 278
E + S +D D E + K + W + S +S +S + EE D S E
Sbjct: 104 EEDSSSSEDSDDSSNEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEERDKSSCDE 159
Query: 279 VEGD-EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
E D E ++V K ++ + KN K + +R S E+YD++
Sbjct: 160 TESDYEPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDND 210
Score = 63 (27.2 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E+E D S E ++ + KPQ + K + +++ R +D++E D
Sbjct: 146 ESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEE---D 202
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 203 DEE------DYDNDKRSSRRQATVNV 222
Score = 50 (22.7 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 400 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 458
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 459 ESLELRDYQLNGLN 472
Score = 47 (21.6 bits), Expect = 1.0e-49, Sum P(5) = 1.0e-49
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 1024 KKSSSPKNEAKLKES--DIKERIK 1045
KK S K EAK KE+ ++K IK
Sbjct: 1383 KKESEEKREAKEKENKRELKREIK 1406
Score = 44 (20.5 bits), Expect = 2.4e-48, Sum P(6) = 2.4e-48
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKER 1043
N R++K K K + +KE D KE+
Sbjct: 1397 NKRELKREIKEKEDKKD--IKEKDFKEK 1422
Score = 43 (20.2 bits), Expect = 3.0e-47, Sum P(5) = 3.0e-47
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 258 SARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
S+ +S S+ D + GS SE E D T + ++ Q K P +V DG F
Sbjct: 26 SSSQSGSSDSDSGSESGSQSESESD--------TSRENKVQAK--PPKV-DGAEF 69
Score = 42 (19.8 bits), Expect = 3.9e-48, Sum P(6) = 3.9e-48
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1018 RDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKA 1055
+DIK +K K E K+KE+ KE+ + +L +K+
Sbjct: 1412 KDIK--EKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1447
Score = 38 (18.4 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1624 QYHDHHKDRHQGD 1636
Score = 38 (18.4 bits), Expect = 9.4e-48, Sum P(6) = 9.4e-48
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNK 1054
K +KK K+ + +E+ +KE I++ + K
Sbjct: 1408 KEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK 1441
Score = 37 (18.1 bits), Expect = 1.2e-48, Sum P(6) = 1.2e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 397 GLPYSECSWEDGALISKK--FQACID 420
Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 737 DVAEKDDFQEQHDN 750
D +E++D +E +DN
Sbjct: 196 DSSEEEDDEEDYDN 209
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 309 (113.8 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 79/221 (35%), Positives = 124/221 (56%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L +GH VLIFSQ +MLN++ E + +GY + R+DGT AS R
Sbjct: 703 SGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVS 762
Query: 812 VNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F D +P +FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+RIGQK
Sbjct: 763 IDHFNAPD-SPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKN 821
Query: 870 DVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQG 925
V VYR ++ TVEE I RK I + + K + + D +EL ++ K G
Sbjct: 822 HVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFG 881
Query: 926 FDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLG-IAGVS 965
++ + +++ + N+D+ L +H + D+ + G S
Sbjct: 882 AS-NMFKATENQKKLENMNLDDIL-SHAEDRDSSNDVGGAS 920
Score = 262 (97.3 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 80/255 (31%), Positives = 128/255 (50%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA--LVV 450
G + Q G+ W+ L + + GIL D+MGLGKT+Q FL+ L HS L + L+V
Sbjct: 387 GGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHS-LKQHGPFLIV 445
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTC---VKTRQYELQYVLQDK----GVLLTTYDI 503
P + + W + L Y G R+YE + +LLTTY+
Sbjct: 446 VPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEY 505
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
+ + + L ++ W Y+ +DE H +KN + ++L + +A+R++I+G
Sbjct: 506 ILKDKQEL------------NNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITG 553
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNLKEL +L NF P K++ EL D+ ++E+ I ++L+
Sbjct: 554 TPLQNNLKELASLVNFLMP-----GKFYIRD-ELNF----DQPNAEQERDI-----RDLQ 598
Query: 624 ERIQPYFLRRLKNEV 638
ER+QP+ LRRLK +V
Sbjct: 599 ERLQPFILRRLKKDV 613
Score = 103 (41.3 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 40/132 (30%), Positives = 62/132 (46%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
++L+ER+QP+ LRRLK +V +L K+E I+ + L+ Q + Y+ L N
Sbjct: 595 RDLQERLQPFILRRLKKDV--------EKSLPSKSERILRVELSDMQTEWYKNILTKNYR 646
Query: 678 IVLSAFDG-SPLAALTI---LKKICDHPLLLT----------KRAAEDVLDGMDSMLNPE 723
+ DG L+ L I LKK+ +HP L K ED L G+ ++N
Sbjct: 647 ALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGI--IMNSG 704
Query: 724 DAALAEKLAMHI 735
L +KL +
Sbjct: 705 KMVLLDKLLQRL 716
Score = 39 (18.8 bits), Expect = 1.1e-49, Sum P(4) = 1.1e-49
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 223 EESKGDDVADEEQETE 238
E+ DD DEE+E E
Sbjct: 183 EQEFYDDFEDEEEEVE 198
Score = 38 (18.4 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 117 PPKAKTVSENDNYKGGNEIRD 137
PP K + KGG EIRD
Sbjct: 373 PPYRKLEKQPSYIKGG-EIRD 392
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 315 (115.9 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
Identities = 100/322 (31%), Positives = 153/322 (47%)
Query: 379 LSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 438
+S P S ++P I L P+Q EG +L L KGGILGDDMGLGKT+Q+ FL
Sbjct: 228 ISLPCSLGVIPAPIAQWLRPYQVEGAAFLHQLFVYQKGGILGDDMGLGKTVQVIAFLTAA 287
Query: 439 F--------HSRLIK-----------RALVVAPKTLLSHWIKELTAVGLSAKIREYFGTC 479
+ R+ K R L++ P TL+ +W E++ G Y G+
Sbjct: 288 YGKTGDERDDKRMRKMRRSEGDLWYPRTLIICPGTLIENWKSEMSRWGWW-HFDAYQGS- 345
Query: 480 VKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538
+ L + +L+TTY S+++ + + WD +I DE H
Sbjct: 346 --NKDLVLHAAKSGRVEILITTY------------STYLKNRDAVNMVDWDCVIADECHA 391
Query: 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 598
IK S++ K++ +I + RI ++GT IQN +ELW L N+ P +G +K P
Sbjct: 392 IKERSSETTKAMNDINALCRIGLTGTAIQNRYEELWTLLNWTNPGRMGPVTTWKSHVSEP 451
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQP-YFLRRLKNEVFHEDDVTSSATLSKKNEMI 657
+ G A ++ R AK+L E + P +FLRR+K + + L KK + +
Sbjct: 452 LKIGQSHDATVQQLRRARVTAKKLVENLLPQFFLRRMKTLIADQ--------LPKKIDRV 503
Query: 658 VWLRLTSCQRQLYEAFLNSEIV 679
V+ LT Q Q YE L+S+I+
Sbjct: 504 VFCPLTDTQAQAYERLLDSDII 525
Score = 295 (108.9 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
Identities = 74/227 (32%), Positives = 118/227 (51%)
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEK-----DDF 744
A+ IL+K+ +H +L ++ DS E E L + + D E+ D
Sbjct: 564 AMQILQKLSNHLAILIPQST-------DSFEKQEKDK--EMLEIAVPDEWERLYRTRDSI 614
Query: 745 QEQHDNISC-KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT 803
D C K + LL G VL+FS + ++L ++Q Y +DG+
Sbjct: 615 INYADAEYCGKWKVLRKLLKWWHGNGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGSM 674
Query: 804 KASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863
R K+V++F +FL++++ GG+GL +T A++V++VDP WNPS D Q+ DRAY
Sbjct: 675 TYETRAKVVDEFNSDPRQFVFLISTRAGGVGLNITSANKVVIVDPNWNPSHDLQAQDRAY 734
Query: 864 RIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
RIGQ ++V V+RL++ GT+EE +Y +QI+K + RYF
Sbjct: 735 RIGQTRNVEVFRLISAGTIEEIVYARQIYKQQQANIGYNASSERRYF 781
Score = 51 (23.0 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 592 KEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDV 644
+++ + + A ++ +G K+ +P +LR K EV +DD+
Sbjct: 110 RKRTSTAVAKNKSSKAAAKDTFVGRVPRKKEVRGFRPTYLRDYKEEVLSDDDL 162
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 345 (126.5 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 120/409 (29%), Positives = 185/409 (45%)
Query: 319 SGGREEYDDEDDC----VIVSGKLVVNRPDRRDGKLNKSAH---SGLVNVLDDYSDDSVL 371
SG EE DDE++ K V+ PD D + H +V D+Y + + +
Sbjct: 678 SGSDEEEDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEHAKQDVDDEYGNSAFI 737
Query: 372 EDEGSITLSGPRSTYMLPGK----IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGK 427
S T + + + L +Q +GL WL SL+ GIL D+MGLGK
Sbjct: 738 RGLQSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGK 797
Query: 428 TMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE 486
T+Q + L RL L++ P + LS+W+ E S Y G+ R +
Sbjct: 798 TIQTIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAF- 856
Query: 487 LQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 545
L + K VL+TTY+ + I D+ W YMI+DEGH +KN +
Sbjct: 857 LPILRSGKFNVLVTTYEYI------------IKDKQVLAKLRWKYMIVDEGHRMKNHHCK 904
Query: 546 RAKSL-LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND 604
+ L + R++++GTP+QN L ELWAL NF P + F++ + P +
Sbjct: 905 LTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 964
Query: 605 KHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTS 664
K L+ E+ I + + L + ++P+ LRRLK EV A L +K E ++ +++
Sbjct: 965 KVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV--------EAQLPEKVEYVIKCDMSA 1014
Query: 665 CQRQLYEAFLNSEIVL---SAFD-----GSPLAALTI--LKKICDHPLL 703
QR LY ++L S D G+ TI L+KIC+HP +
Sbjct: 1015 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM 1063
Score = 284 (105.0 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 65/166 (39%), Positives = 101/166 (60%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + +K+LR+DGTTKA DR ++ +F
Sbjct: 1096 LLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFN 1155
Query: 817 EGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+ IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1156 DPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1215
Query: 876 LMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
L T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1216 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1260
Score = 42 (19.8 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 21/95 (22%), Positives = 42/95 (44%)
Query: 210 NVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRN----EPRWVDNNLVSARESFE- 264
N G V +D E+S D+ D+E+E + + +P D + V AR E
Sbjct: 664 NPGYEVAPRSDS-EDSGSDEEEDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHIIEH 722
Query: 265 SNLDGEEDGGSLSEVEG-DEHLSRVHETKKHHQRQ 298
+ D +++ G+ + + G + + H + ++Q
Sbjct: 723 AKQDVDDEYGNSAFIRGLQSYYAVAHAVTEKVEKQ 757
Score = 37 (18.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 467 EARITEKLEKQQKIEQERKRR 487
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 304 (112.1 bits), Expect = 1.6e-49, Sum P(4) = 1.6e-49
Identities = 90/260 (34%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P IG N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 476 PSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLY 535
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
LVV P + L+ W +E + Y G + R+YE + + L+
Sbjct: 536 GPFLVVVPLSTLTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNALI 595
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS IS W ++ +DE H +KN + K+L++ S HR
Sbjct: 596 TTYEILLKD-KAVLGS--IS---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 643
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 644 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 690
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 691 ---LHKVLEPFLLRRVKKDV 707
Score = 283 (104.7 bits), Expect = 1.6e-49, Sum P(4) = 1.6e-49
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 792 SGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 851
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 852 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 911
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 912 VNIYRLVTKGTVEEEIIER 930
Score = 82 (33.9 bits), Expect = 1.6e-49, Sum P(4) = 1.6e-49
Identities = 32/127 (25%), Positives = 60/127 (47%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 689 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 740
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLT---KRAAEDVLDGMDSMLNPEDAA-LAEK 730
+ GS L I LKK C+H L+ + E+ ++ + S++ L +K
Sbjct: 741 ALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQSLIRSSGKLILLDK 800
Query: 731 LAMHIAD 737
L + D
Sbjct: 801 LLTRLRD 807
Score = 48 (22.0 bits), Expect = 1.6e-49, Sum P(4) = 1.6e-49
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 39 EKPQKVKIEGRRRLCKVSSRDVDNTEN 65
+KP K++ G++R +VSS D D+ E+
Sbjct: 192 KKPPKLQ-RGKKRKRQVSSEDDDDDED 217
Score = 45 (20.9 bits), Expect = 3.3e-49, Sum P(4) = 3.3e-49
Identities = 27/123 (21%), Positives = 48/123 (39%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRN-EPRWVDNNLVSARESFESNLDGEEDGG 274
E +E +E GD E E E I KR + R + V + G++
Sbjct: 149 EISGEEEDEDGGDQGTSAESEPEPKRIKAKRPVQRRTMAKTSVKKPPKLQR---GKKRKR 205
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQK--KNEPKRVHDGERFNGQSFV--SG-GREEYDDED 329
+S + D+ ET K R++ KN + D + + +G G +E++D
Sbjct: 206 QVSSEDDDD--DEDGETPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGADEHEDNS 263
Query: 330 DCV 332
+ +
Sbjct: 264 ETI 266
Score = 37 (18.1 bits), Expect = 2.2e-48, Sum P(4) = 2.2e-48
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 213 GVVESVADEY---EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDG 269
G V S A + EE+ G D A + + + G + N S+ ES ES +
Sbjct: 12 GSVHSNASSHSASEEASGSDSASQSESEQGSEQGSESN----------SSSESSESQSES 61
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKK 300
E SE G + ETK+ +K+
Sbjct: 62 E------SESTGSKSQQTPPETKEKPASKKE 86
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 396 (144.5 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 93/243 (38%), Positives = 145/243 (59%)
Query: 710 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN----ISCKISFILSLLDKL 765
E +L G ++L D + K+ H D+ +D ++ + S K+ + +LL
Sbjct: 569 ESILKGKRNVLMGVD--ILRKICNH-PDLVYRDTLMKRKNYGDPAKSGKMQVLKNLLRLW 625
Query: 766 IPEGHNVLIFSQTRKMLNLIQESIGS----KG--YKFLRIDGTTKASDRVKIVNDFQEGD 819
E H L+F QTR+ML+++++ + + G + +LR+DG+T S R +V+ F +
Sbjct: 626 QSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKRQMLVDAFNQDP 685
Query: 820 VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 879
+FLLT++VGGLG+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQK+D+ +YRLMT
Sbjct: 686 DMHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQARERAWRLGQKRDITIYRLMTT 745
Query: 880 GTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEH 939
G++EEKIY +QIFK L + +Q R+F DL +L +L Q + + T Q E
Sbjct: 746 GSIEEKIYHRQIFKTFLTNKILKDPKQRRFFKANDLHDLFTLGDQDEEGTETAQLF--EG 803
Query: 940 GDQ 942
G+Q
Sbjct: 804 GEQ 806
Score = 348 (127.6 bits), Expect = 5.3e-43, Sum P(4) = 5.3e-43
Identities = 95/279 (34%), Positives = 156/279 (55%)
Query: 491 LQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 549
+ +KG VL+TTY +R SK + + E W Y++LDEGH I+NP + + +
Sbjct: 399 VMEKGHVLVTTYVGLRIYSKHI-----LPRE-------WGYVVLDEGHKIRNPDSDISLT 446
Query: 550 LLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALD 609
+I + +RII+SGTPIQNNL ELW+LF+F P LG F++++ +PI G ++ +
Sbjct: 447 CKKIKTVNRIILSGTPIQNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYANSNN 506
Query: 610 REKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQL 669
+ + A LR+ I PY LRRLK++V + L KKNEM+++++LT Q++L
Sbjct: 507 LQVKTAYKCAVVLRDLISPYMLRRLKSDVAQD--------LPKKNEMVLFVKLTKIQQEL 558
Query: 670 YEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAAL 727
YE+FL SE + S G + L + IL+KIC+HP L+ + D + N D A
Sbjct: 559 YESFLQSEDLESILKGKRNVLMGVDILRKICNHPDLVYR-------DTLMKRKNYGDPAK 611
Query: 728 AEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI 766
+ K+ + + ++ + + C+ +L +L+K +
Sbjct: 612 SGKMQV-LKNLLRLWQSENHKTLLFCQTRQMLDILEKFV 649
Score = 212 (79.7 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI- 444
+ LPG I LF +Q+ ++WLW L+ Q GGI+GD+MGLGKT+QI FLAGL +S L+
Sbjct: 261 FKLPGDIYPSLFDYQKTCVQWLWELYTQKTGGIIGDEMGLGKTIQIISFLAGLHYSGLLD 320
Query: 445 KRALVVAPKTLLSHWIKE 462
K LVV P T+L+ W+ E
Sbjct: 321 KPVLVVVPATVLNQWVNE 338
Score = 46 (21.3 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 262 SFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG 321
S ++ LD + ++ E+E + + H R K +E KR+ D + ++ +
Sbjct: 31 SKDAELDEKRLSKAIKELESTQRQIANLSARLAHPRTKISEKKRLKDEIHWYEENELIPR 90
Query: 322 REEYDD 327
+++ DD
Sbjct: 91 QQDVDD 96
Score = 42 (19.8 bits), Expect = 2.2e-48, Sum P(4) = 2.2e-48
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 3 LDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVS-SRDVD 61
LD+K+ K E+ + + + R+ I E+K K +I + +DVD
Sbjct: 36 LDEKRLSKAIKELESTQRQIANLSARLAHPRTKISEKKRLKDEIHWYEENELIPRQQDVD 95
Query: 62 NTENR 66
+ NR
Sbjct: 96 DIRNR 100
Score = 42 (19.8 bits), Expect = 6.9e-11, Sum P(4) = 6.9e-11
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 717 DSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 776
D + P+ + E L ++ D + D+F +D I + +S E ++I S
Sbjct: 975 DVKVEPDRKQIMENLVEYLGD--QMDNFSTSNDIIK-NVKLSMST------ENEMIMIRS 1025
Query: 777 QTRKMLNLIQESIGSKGYK 795
R++ N +S+ KG+K
Sbjct: 1026 MLREIANW--DSL-RKGWK 1041
Score = 37 (18.1 bits), Expect = 2.2e-48, Sum P(4) = 2.2e-48
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 123 VSENDNYKGGNEIRDI 138
V +NDN N +RD+
Sbjct: 182 VDDNDNSIDKNAVRDL 197
Score = 37 (18.1 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 212 GGVVESVADEYEESKGDD 229
G V ES +EY ES D
Sbjct: 360 GSVSESKLEEYLESTDPD 377
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 347 (127.2 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 130/458 (28%), Positives = 224/458 (48%)
Query: 206 VTKDNVGGVVESVADEYEESKGDDVAD-EEQETENVGIGLKRNEPRWVDNNLVSARESFE 264
+TKD +G V + + E ++ D D EE+E E V K+ + +D + + +
Sbjct: 344 ITKDILGQVDKLLKKETKKVDDSDTEDDEEEEEEEVLFVNKKRKSNPLDGSSTPTKPKSK 403
Query: 265 ---SNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEP-KRVHDGERFNGQSFVSG 320
+ E+D SE E DE S++ E + +K+ E ++V E+ +
Sbjct: 404 PKPKKIIIEDD----SETE-DEK-SQIIEIDDEKEEEKQVEQVEQVEQVEQVEQEEGEEE 457
Query: 321 GREEYDDEDD-------CVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLED 373
EE + E C S +++ + D +N + + + + + +D
Sbjct: 458 EEEEIESEPTIERLIYACECFSKRMLEILSNAEDSTINTTTTAATTSTTTTTTIINNKKD 517
Query: 374 EGSITLSGPRSTYML---PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ 430
+ + +GP ++ L P I ++ +Q GL W+ L+ + GIL D+MGLGKT+Q
Sbjct: 518 KKNNN-NGPTFSHKLVAQPKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQ 576
Query: 431 ICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQY 489
LA + + LVV P T+L++W +E S I Y+G ++ R+ EL+Y
Sbjct: 577 TISLLAHIKEAYNDNGPHLVVVPATILANWEREFQTWCPSLSIVRYYGN-LRERE-ELRY 634
Query: 490 VLQDK------GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 543
L+ K V+LTTY+++ N+ RG F+ + D + ++ILDE IKN
Sbjct: 635 ELKKKRPGKDFNVILTTYNLLFANND--RG--FL--KRFD----YSFLILDEAQNIKNSD 684
Query: 544 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 603
++R K++ +I + HR++++GTP+QNNL ELW+L NF P + G K K+ Y L L
Sbjct: 685 SKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVK--KDNYLLNQLLEY 742
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHE 641
+ D SA+ + +++ + P+ LRRLK+ V E
Sbjct: 743 NGDDCD------SAITR-MKKILSPFILRRLKSTVSKE 773
Score = 266 (98.7 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 61/183 (33%), Positives = 108/183 (59%)
Query: 746 EQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTK 804
EQ S K + +L K I + VLIFSQ ++L+++++ + GY F R+DG+T
Sbjct: 977 EQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTP 1036
Query: 805 ASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 864
++R I++ F + P+FLL++ GGLG+ LT A+ VI D ++NP D Q+ DRA+R
Sbjct: 1037 VNERQSIIDHFSSKETIPVFLLSTNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHR 1096
Query: 865 IGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLS 920
+GQ+++V++Y+L+ TV+ I+ +K+ + + T + + + S+ L+ L S
Sbjct: 1097 LGQEREVIIYKLLAENTVDINIHESANQKKKLNDNVLEEGTFNNAETKLQSKNILKILDS 1156
Query: 921 LPK 923
+ K
Sbjct: 1157 IFK 1159
Score = 70 (29.7 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 210 NVGGVVESV-ADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLD 268
+V V ES +D YE D +D + + KR + R V+NN + +++ + +
Sbjct: 19 DVNYVSESENSDNYESDASDYSSDNNSDYSD---SEKRRKKRVVNNNNNNTKKT--TTVT 73
Query: 269 GEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
+ + S ++ S KK +KK + K+V + E + +E DDE
Sbjct: 74 NTKQSSTQSLKSNNKKSSTSSNNKKSSPIKKKKQSKKVEEDEEDEDEE------DEEDDE 127
Query: 329 DD 330
D+
Sbjct: 128 DE 129
Score = 59 (25.8 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 21/102 (20%), Positives = 41/102 (40%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPR---WVDNNLVSARESFESNLDGEED 272
ES A +Y D +D E+ + + N + V N S+ +S +SN +
Sbjct: 33 ESDASDYSSDNNSDYSDSEKRRKKRVVNNNNNNTKKTTTVTNTKQSSTQSLKSN---NKK 89
Query: 273 GGSLSEVEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
+ S + + + ++KK + ++E D + FN
Sbjct: 90 SSTSSNNKKSSPIKKKKQSKKVEEDEEDEDEEDEEDDEDEFN 131
Score = 46 (21.3 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
Identities = 26/129 (20%), Positives = 53/129 (41%)
Query: 124 SEN-DNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGN 182
SEN DNY+ ++ D +D ++ + +KRR + V+ ++ + K T +K +
Sbjct: 26 SENSDNYE--SDASDYSSDNNS--DYSDSEKRRKKRVVNNNNNNT---KKTTTVTNTKQS 78
Query: 183 LPEYXXXXXXXXXXXXXXXXXXGVTKDNVGGVVESVADEYEESKGDDVADEEQ-ETENVG 241
+ + K VE DE +E + D+ DE++ NV
Sbjct: 79 STQSLKSNNKKSSTSSNNKKSSPIKKKKQSKKVEE--DEEDEDEEDEEDDEDEFNLPNVS 136
Query: 242 IGLKRNEPR 250
+ ++ + +
Sbjct: 137 VEQRKKKQK 145
Score = 43 (20.2 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 702 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQ 747
L + K+ + LDG + P+ +K+ I D +E +D + Q
Sbjct: 380 LFVNKKRKSNPLDGSSTPTKPKSKPKPKKII--IEDDSETEDEKSQ 423
Score = 42 (19.8 bits), Expect = 6.1e-20, Sum P(3) = 6.1e-20
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 500 TYDIVRNNSKSLRGSSFISDEAGDDDAIWD 529
T I +NN K + D+ GDDD + D
Sbjct: 841 TSSIYKNN-KIEKDEIIEIDDGGDDDGLID 869
Score = 42 (19.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 117 PPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFS 167
P K + NDN +I+DI+N L+ + + S + +P + D +S
Sbjct: 909 PLLCKNIFYNDN-----QIQDIVNHLATKDKDWSDYRNDIPSLKELFDTYS 954
Score = 41 (19.5 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 237 TENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDG 273
+ N I KR NN + E E + G++DG
Sbjct: 830 SSNSSIKKKRKTSSIYKNNKIEKDEIIEIDDGGDDDG 866
Score = 39 (18.8 bits), Expect = 6.4e-26, Sum P(3) = 6.4e-26
Identities = 27/123 (21%), Positives = 50/123 (40%)
Query: 694 LKKICDHPLLLTKRAAED-VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNIS 752
L+K +HPLL D + + + L +D ++ I + E D +D +
Sbjct: 902 LRKAANHPLLCKNIFYNDNQIQDIVNHLATKDKDWSD-YRNDIPSLKELFDTYSDYD-VF 959
Query: 753 CKISFILSLLDKL-IPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
+ L DK IP+ + ++ K+ ++ + IG K L T+ D ++
Sbjct: 960 KTVCEHEDLGDKYWIPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILED 1019
Query: 812 VND 814
V D
Sbjct: 1020 VLD 1022
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 307 (113.1 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 449 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 507
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 508 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 567
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 568 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 615
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 616 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 670
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 671 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 700
Score = 270 (100.1 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 788 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 847
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 848 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 907
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 908 YRLVTKGSVEEDILER 923
Score = 81 (33.6 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 671 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 717
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 718 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 763
Score = 66 (28.3 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 28/108 (25%), Positives = 47/108 (43%)
Query: 225 SKGDDVADEEQETENVGIGLKR-NEPRWVDNNLVSARES-FESNLDGEEDGGSLSEVEGD 282
S+ D + E+ + + G K+ N+ W + S +S +S + E D S E D
Sbjct: 121 SEEDSSSSEDSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSESEEERDKSSCDGTESD 180
Query: 283 -EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
E ++V K ++ + KN K + +R S E+ DDED
Sbjct: 181 YEPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDSS------EDEDDED 222
Score = 57 (25.1 bits), Expect = 6.2e-48, Sum P(6) = 6.2e-48
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E+E + S + D+ E ++ + KPQ + K + +++ R +D++E+ D
Sbjct: 164 ESEEERDKSSCDGTESDY-EPKNKVRSRKPQNRSKSKNGKKILGQKKRQIDSSEDE---D 219
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 220 DE-------DYDNDKRSSRRQATVNV 238
Score = 47 (21.6 bits), Expect = 1.7e-47, Sum P(5) = 1.7e-47
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 258 SARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
S+ +S S+ D D GS SE E D T + ++ Q K P +V DG F
Sbjct: 43 SSSQSGSSDSDSGSDSGSQSESESD--------TSRENKVQAK--PPKV-DGAEF 86
Score = 46 (21.3 bits), Expect = 2.2e-20, Sum P(4) = 2.2e-20
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK ++ SR P F D V P+ + + +Y GG+
Sbjct: 416 YSECSWEDGALISKKFQTCIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 474
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 475 EGLELRDYQLNGLN 488
Score = 38 (18.4 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1553 QYHDHHKDRHQGD 1565
Score = 38 (18.4 bits), Expect = 1.4e-46, Sum P(5) = 1.4e-46
Identities = 20/84 (23%), Positives = 27/84 (32%)
Query: 315 QSFVSGGREEYDDEDDCVIVSGK-LVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLED 373
+S +G E DDC SG + DG ++S S D DS +
Sbjct: 8 ESVRNGSGESSQSGDDCGSASGSGSGSSSGSSSDGSSSQSGSSD-----SDSGSDSGSQS 62
Query: 374 EGSITLSGPRSTYMLPGKIGNMLF 397
E S P K+ F
Sbjct: 63 ESESDTSRENKVQAKPPKVDGAEF 86
Score = 37 (18.1 bits), Expect = 6.2e-48, Sum P(6) = 6.2e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 413 GLPYSECSWEDGALISKK--FQTCID 436
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 468 (169.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 125/399 (31%), Positives = 203/399 (50%)
Query: 531 MILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKW 590
+I DEGH +KN ++L + A R++ISGTPIQN+L E ++L NF P LLG
Sbjct: 342 VICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASE 401
Query: 591 FKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATL 650
F++K+E IL+G D A +++ G KE+ ++ +RR + L
Sbjct: 402 FRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTS--------ALLTKYL 453
Query: 651 SKKNEMIVWLRLTSCQRQLYEAFLNSEI---VLSAFDGSPLAAL---TILKKICDHPLLL 704
K E I+ + ++ Q LY + E ++ G+ +AL T LKK+C+HP L+
Sbjct: 454 PVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATASALSFITHLKKLCNHPYLV 513
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 764
D P++ + L++ K F + +IL++ K
Sbjct: 514 -----------YDEFQKPDNRFRNKCLSIFPESFNPKS-FDPSFSGKMKVLDYILAVTRK 561
Query: 765 LIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE-GDVAPI 823
+ VL+ + T+ ++ E +GY F+R+DG+ R KIV+ F +
Sbjct: 562 TTDDKF-VLVSNYTQT-IDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFC 619
Query: 824 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 883
FLL+S+ GG GL L A+R+++ DP WNP+ D+Q++ R +R GQKK +YRL+ G++E
Sbjct: 620 FLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIE 679
Query: 884 EKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 921
EK++++Q K L + E + R+FS + LREL L
Sbjct: 680 EKMFQRQTHKKALSSCVVDAGEDVARHFSSEQLRELFKL 718
Score = 127 (49.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 37/142 (26%), Positives = 71/142 (50%)
Query: 333 IVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKI 392
++SG+ + +RR L H G + +L Y+ + L + + R +++ +
Sbjct: 142 MLSGRSLGLGGNRRKCALFDPYHEGAL-IL--YAPEH-LSEHAQLKEDKDRKVHVVADPV 197
Query: 393 -GNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQICGFLAGLFHSR---- 442
G +L PHQR+G++++W + G I+ D+MGLGKT+Q L L
Sbjct: 198 VGKILRPHQRDGVKFMWDCVTGINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDAC 257
Query: 443 -LIKRALVVAPKTLLSHWIKEL 463
+ ++++V P +L+ +W KE+
Sbjct: 258 PTVSKSIIVCPSSLVKNWDKEI 279
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 367 (134.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 108/354 (30%), Positives = 175/354 (49%)
Query: 345 RRDGKLNKSAHSG---LVNVLDDYSDDSVLEDEGSITLSGPRS--TYMLPGKI--GNMLF 397
R+ +KS +G +V++L DS +I S S T K+ G L
Sbjct: 117 RKTKPKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQPKLITGGQLK 176
Query: 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457
+Q +GL WL +L G GIL D+MGLGKT+Q FL+ L + + LVV P + LS
Sbjct: 177 DYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVSTLS 236
Query: 458 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDI-VRNNSKSLRGSSF 516
+W E+ K+ +Y GT + +L + ++LT+Y+I +R+ +K ++
Sbjct: 237 NWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETTNIILTSYEISIRDFNKLVK---- 292
Query: 517 ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWAL 576
I+ W Y+I+DEGH +KN K L ++ ++R++++GTP+QNNL ELW+L
Sbjct: 293 IN---------WKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSL 343
Query: 577 FNFCCPELLGD----NKWFK--EKYELP-ILRGNDKHALDREKR-----IGSAVAKELRE 624
NF P++ D +WF E EL L G + + K I + K L
Sbjct: 344 LNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHT 403
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
++P+ LRRLK +V L K E ++ + +T Q+++Y +N ++
Sbjct: 404 ILKPFMLRRLKRDVIKN--------LPPKKEYLLHIPMTKLQKKIYYDAVNDKL 449
Score = 236 (88.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 53/137 (38%), Positives = 80/137 (58%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ----ESIGSKGYKFLRIDGTTKASD 807
S K + LL L+ GH VLIF+Q K+L+L++ ES S G K R+DG+T
Sbjct: 610 SAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHG-KICRLDGSTNHQI 668
Query: 808 RVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 867
R + ++ F +FL +++ GGLG+ L AD VI++D WNP D Q++DR +RIGQ
Sbjct: 669 RDEQISQFNNNPKFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQ 728
Query: 868 KKDVVVYRLMTCGTVEE 884
V ++R + ++EE
Sbjct: 729 INPVKIFRFVIKDSIEE 745
Score = 38 (18.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 15/73 (20%), Positives = 27/73 (36%)
Query: 114 FDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNG 173
FD KT + D++ + + S R + +R K D +++F +
Sbjct: 473 FDVDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSL-----KRSYKEADSDEEFEIMDAED 527
Query: 174 DTGQGSKGNLPEY 186
D+ G P Y
Sbjct: 528 DSLTGRGNTTPSY 540
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 367 (134.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 108/354 (30%), Positives = 175/354 (49%)
Query: 345 RRDGKLNKSAHSG---LVNVLDDYSDDSVLEDEGSITLSGPRS--TYMLPGKI--GNMLF 397
R+ +KS +G +V++L DS +I S S T K+ G L
Sbjct: 117 RKTKPKSKSTANGKQDIVSMLSTNISDSTKSTREAIEKSQNSSKITNNKQPKLITGGQLK 176
Query: 398 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 457
+Q +GL WL +L G GIL D+MGLGKT+Q FL+ L + + LVV P + LS
Sbjct: 177 DYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGINGPFLVVVPVSTLS 236
Query: 458 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDI-VRNNSKSLRGSSF 516
+W E+ K+ +Y GT + +L + ++LT+Y+I +R+ +K ++
Sbjct: 237 NWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETTNIILTSYEISIRDFNKLVK---- 292
Query: 517 ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWAL 576
I+ W Y+I+DEGH +KN K L ++ ++R++++GTP+QNNL ELW+L
Sbjct: 293 IN---------WKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSL 343
Query: 577 FNFCCPELLGD----NKWFK--EKYELP-ILRGNDKHALDREKR-----IGSAVAKELRE 624
NF P++ D +WF E EL L G + + K I + K L
Sbjct: 344 LNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHT 403
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
++P+ LRRLK +V L K E ++ + +T Q+++Y +N ++
Sbjct: 404 ILKPFMLRRLKRDVIKN--------LPPKKEYLLHIPMTKLQKKIYYDAVNDKL 449
Score = 236 (88.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 53/137 (38%), Positives = 80/137 (58%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ----ESIGSKGYKFLRIDGTTKASD 807
S K + LL L+ GH VLIF+Q K+L+L++ ES S G K R+DG+T
Sbjct: 610 SAKFQVLNQLLPPLLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHG-KICRLDGSTNHQI 668
Query: 808 RVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 867
R + ++ F +FL +++ GGLG+ L AD VI++D WNP D Q++DR +RIGQ
Sbjct: 669 RDEQISQFNNNPKFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQ 728
Query: 868 KKDVVVYRLMTCGTVEE 884
V ++R + ++EE
Sbjct: 729 INPVKIFRFVIKDSIEE 745
Score = 38 (18.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 15/73 (20%), Positives = 27/73 (36%)
Query: 114 FDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNG 173
FD KT + D++ + + S R + +R K D +++F +
Sbjct: 473 FDVDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSL-----KRSYKEADSDEEFEIMDAED 527
Query: 174 DTGQGSKGNLPEY 186
D+ G P Y
Sbjct: 528 DSLTGRGNTTPSY 540
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 336 (123.3 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
Identities = 120/408 (29%), Positives = 184/408 (45%)
Query: 324 EYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLS--G 381
EY++EDD S +L + D + + +++ D ++DE S+ S G
Sbjct: 615 EYEEEDD-EEESSRLEADEKILLDPNSEEVSEKDAKQIIETAKQD--VDDEYSMQYSARG 671
Query: 382 PRSTYMLPGKIG-----------NMLFPH-QREGLRWLWSLHCQGKGGILGDDMGLGKTM 429
+S Y + I N H Q +GL W+ SL+ GIL D+MGLGKT+
Sbjct: 672 SQSYYTVAHAITERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTI 731
Query: 430 QICGFLAGLF-HSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQ 488
Q + L H RL L++ P + LS+W E S Y GT R Q
Sbjct: 732 QTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ 791
Query: 489 YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 548
VLLTTY+ + I D+ W YMI+DEGH +KN + +
Sbjct: 792 LRSGKFNVLLTTYEYI------------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQ 839
Query: 549 SL-LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 607
L + RI+++GTP+QN L ELWAL NF P + F++ + P ++
Sbjct: 840 VLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD 899
Query: 608 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQR 667
L+ E+ I + + L + ++P+ LRRLK EV + L +K E ++ +++ Q+
Sbjct: 900 LNEEETI--LIIRRLHKVLRPFLLRRLKKEV--------ESQLPEKVEYVIKCDMSALQK 949
Query: 668 QLYEAFLNSEIVLSAFDGSPL------AALTI------LKKICDHPLL 703
LY I+L+ DGS A T+ L+KIC+HP +
Sbjct: 950 ILYRHMQAKGILLT--DGSEKDKKGKGGAKTLMNTIMQLRKICNHPYM 995
Score = 286 (105.7 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
Identities = 71/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1028 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1087
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1088 EPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1147
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1148 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1198
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1199 EENEEEDEVPDDETLNQMI 1217
Score = 44 (20.5 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1260 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1311
Score = 42 (19.8 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK + + K K+ + + K
Sbjct: 1495 IKLNKKDEKSREKGKGKKRQSRAKAK 1520
Score = 42 (19.8 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE+ +GM S L P+ + E M
Sbjct: 536 KKKAEENAEGMASGLGPDGEPIDESSQM 563
Score = 42 (19.8 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDD 327
D E++ GS E E DE S ++ + +P E+ + + + +++ DD
Sbjct: 607 DSEDESGSEYEEEDDEEES----SRLEADEKILLDPNSEEVSEK-DAKQIIETAKQDVDD 661
Query: 328 E 328
E
Sbjct: 662 E 662
Score = 40 (19.1 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 635 LLDPNSEEVSEKDAKQIIETAKQD 658
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 321 (118.1 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 108/416 (25%), Positives = 188/416 (45%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
E+ SL EG + E K ++++ E + + E + + +S ++ D+ED
Sbjct: 85 EKKKRSLKLTEGKSLVDGNGE-KPVMKKKRGREDESYNISEVMSKEEILSVAKKHKDNED 143
Query: 330 DCVIVSGKLVVNRPDRRDGK-LNKSAHSGLVNVLDDYSDDSVLEDEGS-ITLSGPRSTYM 387
+ + V + +D + K S V + D V + G + P+
Sbjct: 144 ESSSTTSLCVEDIQKNKDSNSMIKDRLSQTVRQNSKFFFDPVRKCNGQPVPFQQPKHF-- 201
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA 447
G ++ +Q EG+ WL L G GIL D+MGLGKT+Q +A + +
Sbjct: 202 ----TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPF 257
Query: 448 LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQ-----YELQYVLQDKGVLLTTYD 502
LV P + L +W+ E Y GT R+ ++ Q LQ V++T+++
Sbjct: 258 LVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVTSFE 317
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
I + +L+ W Y+I+DEGH IKN + + L + ++++++
Sbjct: 318 IAMRDQNALQ------------HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLT 365
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL ELW+L NF P++ D K F+ +++ L + + +E+ V L
Sbjct: 366 GTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE--QNVLHML 423
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
+ + P+ LRRLK++V E + K E++V+ L + Q Y A +N I
Sbjct: 424 HQILTPFLLRRLKSDVALE--------VPPKREVVVYAPLCNKQEIFYTAIVNRTI 471
Score = 294 (108.6 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 70/198 (35%), Positives = 110/198 (55%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
+LD+++PE GH VL+FSQ ML+++ + + + F R+DG+ S+R K + F
Sbjct: 586 ILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFN 645
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
+FL++++ GGLG+ LT AD VI+ D WNP +D Q+ DR +RIGQ K VVVYRL
Sbjct: 646 TDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 705
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL--PKQGFDVSLTQQQ 934
+T T+++KI + K L K HK + Q L + + K+ ++ ++
Sbjct: 706 VTANTIDQKIVERAAAKRKLEKLII-HKNHFKG-GQSGLSQSKNFLDAKELMELLKSRDY 763
Query: 935 LHEEHGDQHNM--DESLE 950
E G + + DE LE
Sbjct: 764 EREVKGSREKVISDEDLE 781
Score = 44 (20.5 bits), Expect = 6.4e-21, Sum P(3) = 6.4e-21
Identities = 20/94 (21%), Positives = 41/94 (43%)
Query: 232 DEEQETENVGIGLKRNEPRWVDNNLVS-ARESFESNLDGEEDGGSLSEVEGDEHLSRVHE 290
+EE++ E G+ E + ++ S RES E + S + L+++ +
Sbjct: 16 EEEEQLEAAGL---EKERKMLEEAQKSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQ 72
Query: 291 TKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREE 324
+ Q++K+ K+ + G+S V G E+
Sbjct: 73 QQLEEQKKKEKLEKKKRSLKLTEGKSLVDGNGEK 106
Score = 41 (19.5 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 691 LTILKKICDHPLLL 704
+ +L+K C+HP ++
Sbjct: 547 MMLLRKCCNHPYMI 560
Score = 39 (18.8 bits), Expect = 2.2e-49, Sum P(4) = 2.2e-49
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 38 EEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVD 70
EE+ +K K+E ++R K+ TE +++VD
Sbjct: 76 EEQKKKEKLEKKKRSLKL-------TEGKSLVD 101
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 296 (109.3 bits), Expect = 3.1e-49, Sum P(4) = 3.1e-49
Identities = 87/260 (33%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P +G N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 476 PAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY 535
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
L+V P + L+ W +E + Y G + R+YE + + L+
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S HR
Sbjct: 596 TTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 643
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 644 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 690
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 691 ---LHKVLEPFLLRRVKKDV 707
Score = 283 (104.7 bits), Expect = 3.1e-49, Sum P(4) = 3.1e-49
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 792 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 851
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 852 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 911
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 912 VNIYRLVTKGTVEEEIIER 930
Score = 81 (33.6 bits), Expect = 3.1e-49, Sum P(4) = 3.1e-49
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 689 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 740
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 741 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 787
Score = 43 (20.2 bits), Expect = 3.1e-49, Sum P(4) = 3.1e-49
Identities = 19/102 (18%), Positives = 44/102 (43%)
Query: 216 ESVADEYEESKGDDVADEEQETENVG------IGLKRNEPRWVDNNLVSARESFESNLDG 269
E+ +D+ E G+ V +++ +E + +G K + A + D
Sbjct: 238 ETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDS 297
Query: 270 EEDGGSLSEV---EGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
E+D G + + +G ++ E+++ Q+QK K++ +
Sbjct: 298 EKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLEN 339
Score = 42 (19.8 bits), Expect = 3.9e-49, Sum P(4) = 3.9e-49
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R++ D DD
Sbjct: 155 SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDD 209
Score = 37 (18.1 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 190 VKKQPKTQRGKRKKQDSSDDDD 211
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 297 (109.6 bits), Expect = 3.7e-49, Sum P(3) = 3.7e-49
Identities = 87/260 (33%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P +G N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 481 PAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY 540
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
L+V P + L+ W +E + Y G + R+YE + + L+
Sbjct: 541 GPFLIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 600
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S HR
Sbjct: 601 TTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 648
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 649 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 695
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 696 ---LHKVLEPFLLRRVKKDV 712
Score = 284 (105.0 bits), Expect = 3.7e-49, Sum P(3) = 3.7e-49
Identities = 64/155 (41%), Positives = 96/155 (61%)
Query: 739 AEKDDFQEQHDNI---SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK 795
+E++ QE ++ S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y
Sbjct: 781 SERETGQEVLQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYP 840
Query: 796 FLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
F R+DG+ K R + ++ F +G FLL+++ GGLG+ L AD V++ D WNP
Sbjct: 841 FQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 900
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
D Q+ RA+RIGQKK V +YRL+T GTVEE+I +
Sbjct: 901 DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIER 935
Score = 85 (35.0 bits), Expect = 3.7e-49, Sum P(3) = 3.7e-49
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 694 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 745
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAED 711
+ GS L I LKK C+H L+ RA ED
Sbjct: 746 ALAKGTRGSTSGFLNIVMELKKCCNHCYLI--RAPED 780
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 322 (118.4 bits), Expect = 3.9e-49, Sum P(3) = 3.9e-49
Identities = 90/309 (29%), Positives = 156/309 (50%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLS 457
+Q +GL WL SLH GIL D+MGLGKT+Q FL L + + I+ L++ PK+ L
Sbjct: 187 YQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLD 246
Query: 458 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSF 516
+W +E + + G +L+ + VL+T+Y++V +L+ +
Sbjct: 247 NWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLA- 305
Query: 517 ISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWAL 576
W Y+++DE H IKN + ++ + S +R++I+GTP+QNNL ELWAL
Sbjct: 306 -----------WQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWAL 354
Query: 577 FNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKN 636
NF P++ GD++ F E +E + N + D+E V ++L + P+ LRR+K
Sbjct: 355 LNFLLPDIFGDSELFDEWFE----QNNSEQ--DQE-----IVIQQLHSVLNPFLLRRVKA 403
Query: 637 EVFHE--DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTIL 694
+V + ++ + + I W + + ++ + +A +N + L + L
Sbjct: 404 DVEKSLLPKIETNVYVGMTDMQIQWYK-SLLEKDI-DA-VNGAVGKREGKTRLLNIVMQL 460
Query: 695 KKICDHPLL 703
+K C+HP L
Sbjct: 461 RKCCNHPYL 469
Score = 283 (104.7 bits), Expect = 3.9e-49, Sum P(3) = 3.9e-49
Identities = 55/139 (39%), Positives = 92/139 (66%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L +G VLIFSQ ++L+++++ + +++ RIDG+T +R++
Sbjct: 489 SGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEA 548
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++++ + + +FLLT++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 549 IDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQ 608
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V VYR +T +EEK+ +
Sbjct: 609 VHVYRFVTENAIEEKVIER 627
Score = 158 (60.7 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 57/200 (28%), Positives = 92/200 (46%)
Query: 327 DEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTY 386
D D + V+ R K K + L+ ++ D+ ED I +S S +
Sbjct: 123 DSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQED---IFVSESPS-F 178
Query: 387 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
+ GK+ + +Q +GL WL SLH GIL D+MGLGKT+Q FL L + + I+
Sbjct: 179 VKSGKLRD----YQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEG 234
Query: 447 A-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIV 504
L++ PK+ L +W +E + + G +L+ + VL+T+Y++V
Sbjct: 235 PFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMV 294
Query: 505 ---RNNSKSLRGSSFISDEA 521
+N K L + DEA
Sbjct: 295 IREKNALKRLAWQYIVIDEA 314
Score = 51 (23.0 bits), Expect = 3.9e-49, Sum P(3) = 3.9e-49
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 276 LSEVEGDEH-LSRVHET----KKHHQRQKKNEPKRVHDGERFNGQSFVSGGREE-YDDED 329
L +++ D + LS+ H T +HH++ +K E + E + V +E+ + E
Sbjct: 119 LKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEE---EEIVDTYQEDIFVSES 175
Query: 330 DCVIVSGKL 338
+ SGKL
Sbjct: 176 PSFVKSGKL 184
Score = 40 (19.1 bits), Expect = 5.5e-48, Sum P(3) = 5.5e-48
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 233 EEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETK 292
EEQ ++ K P V LV +S +SN ++D SE D+ + V +
Sbjct: 6 EEQRSDTKNS--KSESPSEV---LVDTLDS-KSNGSSDDDNIGQSEELSDKEIYTVEDRP 59
Query: 293 KHH--QRQKK 300
+ QR+KK
Sbjct: 60 PEYWAQRKKK 69
Score = 38 (18.4 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 912 QQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTL 959
Q +L EL +L +L +E +Q+N ++ E IQ L ++
Sbjct: 345 QNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSV 392
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 347 (127.2 bits), Expect = 4.9e-49, Sum P(5) = 4.9e-49
Identities = 99/331 (29%), Positives = 166/331 (50%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL+W+ SL GIL D+MGLGKT+Q L L+ + I+ LV+
Sbjct: 763 VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E + + + G+ + + + + + V+LTT++ +
Sbjct: 823 VPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYI------ 876
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I + A W +MI+DEGH +KN ++ + +L + +R+I++GTP+QNN
Sbjct: 877 ------IKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNN 930
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L E+ + V + L + ++
Sbjct: 931 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETL--LVIRRLHKVLR 988
Query: 628 PYFLRRLKNEVFHE-DDVTSSATLSKKN--EMIVWLRLTSCQRQLYEAFLNSEIV-LSAF 683
P+ LRRLK +V E D K + + I++ ++ +R N ++V L F
Sbjct: 989 PFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGF 1048
Query: 684 DGSPLAALTILKKICDHPLLLTKRAAEDVLD 714
+ + LKKIC+HP + + ED ++
Sbjct: 1049 NNQIMQ----LKKICNHPFVFEE--VEDQIN 1073
Score = 274 (101.5 bits), Expect = 4.9e-49, Sum P(5) = 4.9e-49
Identities = 64/176 (36%), Positives = 108/176 (61%)
Query: 745 QEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRID 800
+E +D+I +++ LLD+++P+ GH VLIF Q ++++++++ + K+LR+D
Sbjct: 1076 RETNDDI-WRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLD 1134
Query: 801 GTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859
G TK+ +R +++ F D + F+L+++ GGLGL L AD VI+ D WNP D Q+
Sbjct: 1135 GHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQ 1194
Query: 860 DRAYRIGQKKDVVVYRLMTCGTVEEKI----YRK-----QIFKGGLFKTATEHKEQ 906
DRA+RIGQK +V + RL+T +VEE I Y+K ++ + G F + +EQ
Sbjct: 1195 DRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQ 1250
Score = 46 (21.3 bits), Expect = 4.9e-49, Sum P(5) = 4.9e-49
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMV-NIESR 99
PQ+ G S +N EN A D N +++ +S LQ + S NI+
Sbjct: 134 PQRQSSVGSLNATNFSPTPANNGENAAEKPDNSNHNNLNLNNSELQPQNRSLQEHNIQDS 193
Query: 100 AVI 102
V+
Sbjct: 194 NVM 196
Score = 44 (20.5 bits), Expect = 4.9e-49, Sum P(5) = 4.9e-49
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1024 KKSSSPKNEAKLKESDIKERIKR 1046
K+ S + E +LK+S+I E + R
Sbjct: 1267 KRESGVEEEEELKDSEINEILAR 1289
Score = 44 (20.5 bits), Expect = 4.9e-49, Sum P(5) = 4.9e-49
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 323 EEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDY 365
EEYDD+DD V V +R + D K S G L DY
Sbjct: 731 EEYDDDDDNSNVDYYNVAHRI-KEDIKKQPSILVG--GTLKDY 770
Score = 40 (19.1 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 481 KTRQYELQYVLQDKGVLLTTYDIVRNNS 508
K RQ ELQ Q +G+ + +IV N+S
Sbjct: 49 KQRQ-ELQMQRQQQGISGSQQNIVPNSS 75
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 345 (126.5 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 105/365 (28%), Positives = 176/365 (48%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLW 408
KLN L + +++++ TL + +P I L +Q GL W+
Sbjct: 511 KLNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMV 570
Query: 409 SLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVG 467
+L+ + GIL D+MGLGKT+Q LA + S I L+V P +++ +W E
Sbjct: 571 TLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWC 630
Query: 468 LSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDA 526
+ KI YFGT + + ++ + V +T+Y V + ++ + +
Sbjct: 631 PALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRA----------- 679
Query: 527 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLG 586
W Y+ILDE IKN +QR ++LL + + R++++GTP+QN+L ELW+L +F P +
Sbjct: 680 -WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFS 738
Query: 587 DNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTS 646
+ FK+ + P L G ++ + + L + ++P+ LRRLK EV +
Sbjct: 739 SHDDFKDWFSNP-LTG----MMEGNMEFNAPLIGRLHKVLRPFILRRLKKEVEKQ----- 788
Query: 647 SATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF-DGSPLAALTI---LKKICDHPL 702
L +K E IV L+ QR LY+ F++ G+ ++ L I L+K C+HP
Sbjct: 789 ---LPEKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCNHPN 845
Query: 703 LLTKR 707
L R
Sbjct: 846 LFEPR 850
Score = 277 (102.6 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 63/167 (37%), Positives = 96/167 (57%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL +L H LIF+Q KML+++Q + GY++ R+DGTT R ++
Sbjct: 1189 KLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMME 1248
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F F+L+++ GG+G+ LT AD VI D WNP+ D Q+ DR +RIGQ ++V +
Sbjct: 1249 RFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSI 1308
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQD-LREL 918
YRL++ T+EE I RK K L + A + +F Q D +R+L
Sbjct: 1309 YRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDL 1355
Score = 49 (22.3 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 56 SSRDVDNTENRAVVDDEPNFSD-ITDFDSPLQSKT-VSAMVNIESR 99
S+R T +R+V DD+P+ S + SP+ +T A+V E +
Sbjct: 10 STRISRRTSSRSVADDQPSTSSAVAPPPSPIAIETDEDAVVEEEKK 55
Score = 46 (21.3 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1014 AFNPRDIKLNKKSSSPKNEAKLKESDIKERIK 1045
A R+++ P++E++L E D+K I+
Sbjct: 1852 ALESRNLQSLNGGMPPRHESRLAEFDVKTNIR 1883
Score = 46 (21.3 bits), Expect = 1.0e-48, Sum P(4) = 1.0e-48
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 83 SPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDL 142
+P+++ + SR+V DD P S P A E+ + + + +DL
Sbjct: 4 TPVRASSTRISRRTSSRSVADDQPSTSSAVAPPPSPIAIETDEDAVVEEEKKKKKTSDDL 63
Query: 143 SARLEILSIDKRRVP 157
+D RR+P
Sbjct: 64 EIITPRTPVD-RRIP 77
Score = 41 (19.5 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 302 EPKRVH-DGERFNGQSFVSGGREEYDDEDDCVIVS 335
EP+ G RFN +FV+ + ED+ V+ S
Sbjct: 918 EPRAPEVGGFRFNRTAFVAKNPHTEESEDEGVMRS 952
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 543 (196.2 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 148/508 (29%), Positives = 267/508 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 500 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 559
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 560 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDR-- 617
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 618 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 670
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 671 MSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI--AHAKQI---IKPFILRR 725
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
+K EV + D +S+K E + ++ + N+E+ +A
Sbjct: 726 VKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNMEKNTEMCNVMMQLRKMA 785
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNP----EDAALAEKLAMHIA--DVAEKDD 743
+L + L + + + + NP ED + +H+ ++
Sbjct: 786 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 845
Query: 744 FQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR+DG
Sbjct: 846 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 905
Query: 802 TTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q+ D
Sbjct: 906 KTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 964
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
R +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 965 RCHRVGQTKEVLVIKLISQGTIEESMLK 992
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 340 (124.7 bits), Expect = 5.8e-49, Sum P(4) = 5.8e-49
Identities = 102/324 (31%), Positives = 155/324 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 802 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 855
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 856 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 910 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 967
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL---SAFD-- 684
LRRLK EV A L +K E ++ +++ QR LY ++L S D
Sbjct: 968 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK 1019
Query: 685 ---GSPLAALTI--LKKICDHPLL 703
G+ TI L+KIC+HP +
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHPYM 1043
Score = 283 (104.7 bits), Expect = 5.8e-49, Sum P(4) = 5.8e-49
Identities = 65/165 (39%), Positives = 99/165 (60%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ +G+K+LR+DGTTKA DR ++ F
Sbjct: 1076 LLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-FN 1134
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
E LL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQ+ +V V RL
Sbjct: 1135 EPGSEYFILLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1194
Query: 877 MTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQIRYFSQ 912
T +VEEKI Y+ +++ + G+F + E+ R F Q
Sbjct: 1195 CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQ 1238
Score = 48 (22.0 bits), Expect = 5.8e-49, Sum P(4) = 5.8e-49
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREEYD 326
D EE G E E +E + + +KK P D + + + +++ D
Sbjct: 648 DSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVD 707
Query: 327 DE 328
DE
Sbjct: 708 DE 709
Score = 37 (18.1 bits), Expect = 5.8e-49, Sum P(4) = 5.8e-49
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 441 EARITEKLEKQQKIEQERKRR 461
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 356 (130.4 bits), Expect = 6.2e-49, Sum P(3) = 6.2e-49
Identities = 113/341 (33%), Positives = 173/341 (50%)
Query: 641 EDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDGSPLAALTILKKI 697
++DV S L K E I+ ++L+ Q++ Y A L S + S + + L+K
Sbjct: 1424 KEDVEKS--LGPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGTSAPSLMNVMMELRKC 1481
Query: 698 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISF 757
C+HP L+ AE+ + + +P+ E+ H A + S K+
Sbjct: 1482 CNHPFLIN--GAEEAIMNDFRLAHPD---WDEETLAHKALI-----------QASGKVVL 1525
Query: 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDF-Q 816
I LL KL +GH VLIFSQ K+L+L++E + S Y F RIDG + R ++ F +
Sbjct: 1526 IEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSK 1585
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
E +FLL ++ GGLG+ LT AD VI+ D WNP D Q+ R +RIGQKK V VYRL
Sbjct: 1586 ENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRL 1645
Query: 877 MTCGTVEEKIYRKQIFKGGLFK----TATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQ 932
+T T E +++ K K GL K + T K + S++D+ ELL K+G S+
Sbjct: 1646 ITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGTALSKKDVEELL---KKGAYGSIMD 1702
Query: 933 QQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 973
++ ++ +++ L+ Q + TL AG LF+K
Sbjct: 1703 EENESSKFNEEDIETILQRRTQTI-TLE-AG--QKGSLFAK 1739
Score = 256 (95.2 bits), Expect = 6.2e-49, Sum P(3) = 6.2e-49
Identities = 74/253 (29%), Positives = 129/253 (50%)
Query: 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 450
K GN L +Q EG+ WL + + IL D+MGLGKT+Q FL+ ++ + LVV
Sbjct: 1192 KNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDYGIHGPFLVV 1251
Query: 451 APKTLLSHWIKEL-TAVGLSAKIREYFGTCVKT---RQYELQYVLQDKGVLLTTYDIVRN 506
P + + +W++E T ++A + Y G+ +QYE+ Y + G + V+
Sbjct: 1252 VPLSTIQNWVREFETWTDMNAIV--YHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKI 1309
Query: 507 NSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR-AKSLLEIPSAHRIIISGTP 565
++ + +SD W ++DE H +KN + + LL HR++++GTP
Sbjct: 1310 DALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTP 1369
Query: 566 IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625
+QNN+ EL++L NF P+ ++ F E++ G+ + D + ++L+E
Sbjct: 1370 LQNNIDELFSLLNFLHPQQFDNSATFLEQF------GSCQ--TDDQ-------VQKLQEI 1414
Query: 626 IQPYFLRRLKNEV 638
++P LRRLK +V
Sbjct: 1415 LKPMMLRRLKEDV 1427
Score = 57 (25.1 bits), Expect = 6.2e-49, Sum P(3) = 6.2e-49
Identities = 30/112 (26%), Positives = 45/112 (40%)
Query: 233 EEQETENVGIGLKRNEPRW-VDNNLVSARESFESNLDGEE----DGGSLSEVEGDEHLSR 287
E+ + EN+ ++ EP+ VD V E+ + D EE G++ E +
Sbjct: 748 EQNDYENI----EKEEPQVSVDPEPVEV-EAQQEPADTEEYPIPSVGTIEEPAEEPAEEP 802
Query: 288 VHETKKHHQRQKKNE--PKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGK 337
V E + ++ P + D E F G G EE DEDD S K
Sbjct: 803 VEEPEPMDDSSPVDQSTPVKADDIENFAGVEETFGEEEEVQDEDDDEASSAK 854
Score = 55 (24.4 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 30/141 (21%), Positives = 53/141 (37%)
Query: 209 DNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLD 268
+N GV E+ +E E DD DE ++ +K E D+ ++ E+ +
Sbjct: 827 ENFAGVEETFGEEEEVQDEDD--DEASSAKSSKDDIKEEED---DDTSTITKDMSEAPSE 881
Query: 269 GEEDGGSLSEVEGDEHLSRVHETKKHHQRQ-----KKNEPKRVHDGE-------RFNGQS 316
DG + + KK ++R K + K V D + R G+
Sbjct: 882 -TNDGFTEPSTPATPLMGATSSKKKSYRRPAVVVAKSRKKKSVDDSDDDDFYPQRGRGKK 940
Query: 317 FVSGGREEYDDEDDCVIVSGK 337
GG+++ D D+ + K
Sbjct: 941 KGGGGKKKADPTDEAGVEGAK 961
Score = 52 (23.4 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 39/145 (26%), Positives = 58/145 (40%)
Query: 213 GVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEED 272
G VE E E ++G + EE+ E V + EP+ N S S E +
Sbjct: 994 GKVEKKVPETEVAEGSEENGEEKSEEKV-----KKEPKENGENGESVGNGESSKSKTESE 1048
Query: 273 GGSLSEVEGDEHL------SRVH-ETKKHHQRQKKNEPKRVHDG-ERFNGQSFVSGGREE 324
+ E E ++ L S VH E K + + + KRV +RF + S ++
Sbjct: 1049 TNEIEEEEVEQFLIKWKGRSYVHCEWKTAAELLEID--KRVEAKIKRFKVKKMSSYIEDD 1106
Query: 325 YDDEDDCVIVSGKLVVNRPDRRDGK 349
D D VIV VV+ DG+
Sbjct: 1107 EDFNSDFVIVDR--VVDLITEDDGQ 1129
Score = 47 (21.6 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 43/176 (24%), Positives = 73/176 (41%)
Query: 5 DKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDE--EKPQKVKIEGRRRLCKVSSRD--- 59
D +PV+VEA+ D + ++ + S I+E E+P + +E + S D
Sbjct: 765 DPEPVEVEAQQEPAD----TEEYP-IPSVGTIEEPAEEPAEEPVEEPEPMDDSSPVDQST 819
Query: 60 ---VDNTENRAVVDDE-PNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFD 115
D+ EN A V++ ++ D D S S+ +I+ DD S IT
Sbjct: 820 PVKADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSKDDIKEEE--DDDT--STITKDM 875
Query: 116 SPPKAKTVSENDNY-KGGNEIRDILNDLSA-----RLEILSIDKRRVPKTVDPEDD 165
S ++T ND + + ++ S+ R + + K R K+VD DD
Sbjct: 876 SEAPSET---NDGFTEPSTPATPLMGATSSKKKSYRRPAVVVAKSRKKKSVDDSDD 928
Score = 45 (20.9 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 22/105 (20%), Positives = 41/105 (39%)
Query: 3 LDDKKPVKVEAEVRTNDCSVLSR-DHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVD 61
+DD PV V+ +D + + E V DE+ + + + K D
Sbjct: 809 MDDSSPVDQSTPVKADDIENFAGVEETFGEEEEVQDEDDDEASSAKSSKDDIKEEEDDDT 868
Query: 62 NT--ENRAVVDDEPN--FSDITDFDSPLQSKTVSAMVNIESRAVI 102
+T ++ + E N F++ + +PL T S + AV+
Sbjct: 869 STITKDMSEAPSETNDGFTEPSTPATPLMGATSSKKKSYRRPAVV 913
Score = 40 (19.1 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 1014 AFNPRDIK-LNKKSS-----SPKNEA-KLKESDIKERIKRLSQLISNKA 1055
A + +D++ L KK + +NE+ K E DI+ ++R +Q I+ +A
Sbjct: 1682 ALSKKDVEELLKKGAYGSIMDEENESSKFNEEDIETILQRRTQTITLEA 1730
Score = 37 (18.1 bits), Expect = 2.9e-46, Sum P(4) = 2.9e-46
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 117 PPKAKTVSENDNYKGGNEIRD 137
P + K +S + +K GN +R+
Sbjct: 1179 PEEWKKMSTSKVWKNGNSLRE 1199
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 301 (111.0 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 88/281 (31%), Positives = 138/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G L +Q GL WL C+G IL D+MG
Sbjct: 450 FKDCKVLKQRPRFVALKKQPSY-IGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMG 508
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 509 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 568
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 569 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 616
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 617 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 671
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 672 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 701
Score = 270 (100.1 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 60/136 (44%), Positives = 86/136 (63%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 789 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 848
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V +
Sbjct: 849 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 908
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 909 YRLVTKGSVEEDILER 924
Score = 81 (33.6 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 672 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 718
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 719 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 764
Score = 67 (28.6 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEE-DGGSLSE 278
E + S +D D E + K + W + S +S +S + EE D S E
Sbjct: 121 EEDSSSSEDSDDSSNEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEERDKSSCDE 176
Query: 279 VEGD-EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
E D E ++V K ++ + KN K + +R S E+YD++
Sbjct: 177 TESDYEPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDND 227
Score = 63 (27.2 bits), Expect = 6.9e-48, Sum P(6) = 6.9e-48
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E+E D S E ++ + KPQ + K + +++ R +D++E D
Sbjct: 163 ESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEE---D 219
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 220 DEE------DYDNDKRSSRRQATVNV 239
Score = 50 (22.7 bits), Expect = 8.7e-21, Sum P(4) = 8.7e-21
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 417 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 475
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 476 ESLELRDYQLNGLN 489
Score = 45 (20.9 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 28/97 (28%), Positives = 38/97 (39%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES D D+ G G D S+ +S S+ D + GS
Sbjct: 8 ESVRNSSGESSQSD--DDSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSDSGSESGS 60
Query: 276 LSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
SE E D T + ++ Q K P +V DG F
Sbjct: 61 QSESESD--------TSRENKVQAK--PPKV-DGAEF 86
Score = 38 (18.4 bits), Expect = 6.6e-49, Sum P(5) = 6.6e-49
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1553 QYHDHHKDRHQGD 1565
Score = 37 (18.1 bits), Expect = 6.9e-48, Sum P(6) = 6.9e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 414 GLPYSECSWEDGALISKK--FQACID 437
Score = 37 (18.1 bits), Expect = 7.7e-16, Sum P(4) = 7.7e-16
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 737 DVAEKDDFQEQHDN 750
D +E++D +E +DN
Sbjct: 213 DSSEEEDDEEDYDN 226
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 340 (124.7 bits), Expect = 6.7e-49, Sum P(4) = 6.7e-49
Identities = 107/355 (30%), Positives = 170/355 (47%)
Query: 363 DDYSDDSVLEDEGSITLS-GPRST-----YMLPGKIGNM-LFPHQREGLRWLWSLHCQGK 415
D+Y + + + E T + G R +M+ G ++ L P+Q +GL W+ SL
Sbjct: 326 DEYENKTKMNIEDYYTTAHGVREEIKEQHFMMGGGNPSLKLKPYQIKGLEWMVSLFNNNL 385
Query: 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIRE 474
GIL D+MGLGKT+Q F+ L + LV+ P + + +W E + +
Sbjct: 386 NGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLIA 445
Query: 475 YFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 533
Y G +TR+ + K VLLTT++ V K+L G W YMI+
Sbjct: 446 YKGP-KETRKVFEPIIKSGKFNVLLTTFEYVIRE-KALLGK-----------LRWKYMII 492
Query: 534 DEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 592
DEGH +KN + + L R++I+GTP+QN L ELWAL NF P + F+
Sbjct: 493 DEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCSTFE 552
Query: 593 EKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSK 652
+ + P +K L +E+ + + + L + ++P+ LRRLK EV E L
Sbjct: 553 QWFNAPFATTGEKVELTQEETM--LIIRRLHKVLRPFLLRRLKKEVESE--------LPD 602
Query: 653 KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD--GSPLAALTI--LKKICDHPLL 703
K E +V +++ Q+ LY+ + ++L GS T+ L+K+C+HP L
Sbjct: 603 KMEFVVRCDMSALQKVLYK-HMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFL 656
Score = 280 (103.6 bits), Expect = 6.7e-49, Sum P(4) = 6.7e-49
Identities = 57/144 (39%), Positives = 90/144 (62%)
Query: 751 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810
+S K+ + +L KL GH VL+F Q M+ ++++ + ++LR+DG+TK +R
Sbjct: 681 VSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGA 740
Query: 811 IVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
+++ F + +F+L+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK
Sbjct: 741 LLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKA 800
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFK 893
+V V+RL+T +VEEKI +K
Sbjct: 801 EVRVFRLITANSVEEKILAAARYK 824
Score = 46 (21.3 bits), Expect = 6.7e-49, Sum P(4) = 6.7e-49
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 995 VGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKE 1042
+G S +A N D P +KLN K + P E + D KE
Sbjct: 1188 IGQGQPSISLAANEDKNH---PPIKLKLNVKFNMPSQETDGSKKDKKE 1232
Score = 40 (19.1 bits), Expect = 2.8e-48, Sum P(4) = 2.8e-48
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKERIK 1045
+P++ + KK + ++ E D+K +I+
Sbjct: 1059 HPKEKEKEKKKEKEQEKSTDSEKDLKRKIE 1088
Score = 37 (18.1 bits), Expect = 6.7e-49, Sum P(4) = 6.7e-49
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 223 EESKGDDVADEEQE 236
EES GD+ DE E
Sbjct: 40 EESLGDEPVDETVE 53
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 541 (195.5 bits), Expect = 8.9e-49, P = 8.9e-49
Identities = 150/511 (29%), Positives = 270/511 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 556
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDR-- 614
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 615 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 667
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 668 MSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI--AHAKQI---IKPFILRR 722
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMI---VWLRLTSCQRQLYEA--FLNSEIVLSAFD 684
+K EV + D +S+K E + ++ RL + ++ N + L
Sbjct: 723 VKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMA 782
Query: 685 GSPLA--ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIA--DVAE 740
PL +K+ + L+ K + ++ ED + +H+
Sbjct: 783 NHPLLHRQYYTAEKLKEMSQLMLKEPTH--CEANPDLIF-EDMEVMTDFELHVLCKQYRH 839
Query: 741 KDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
++FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR
Sbjct: 840 INNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 799 IDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857
+DG T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
Query: 858 SVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 541 (195.5 bits), Expect = 8.9e-49, P = 8.9e-49
Identities = 150/511 (29%), Positives = 270/511 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 556
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDR-- 614
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 615 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 667
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 668 MSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI--AHAKQI---IKPFILRR 722
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMI---VWLRLTSCQRQLYEA--FLNSEIVLSAFD 684
+K EV + D +S+K E + ++ RL + ++ N + L
Sbjct: 723 VKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMA 782
Query: 685 GSPLA--ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIA--DVAE 740
PL +K+ + L+ K + ++ ED + +H+
Sbjct: 783 NHPLLHRQYYTAEKLKEMSQLMLKEPTH--CEANPDLIF-EDMEVMTDFELHVLCKQYRH 839
Query: 741 KDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
++FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR
Sbjct: 840 INNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 799 IDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857
+DG T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
Query: 858 SVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 541 (195.5 bits), Expect = 8.9e-49, P = 8.9e-49
Identities = 148/508 (29%), Positives = 267/508 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q + + +D V++TTY+ ++S
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDR-- 614
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 615 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 667
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 668 MSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI--AHAKQI---IKPFILRR 722
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
+K EV + D +S+K E + ++ + N+E+ +A
Sbjct: 723 VKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMA 782
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNP----EDAALAEKLAMHIA--DVAEKDD 743
+L + L + + + + NP ED + +H+ ++
Sbjct: 783 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 842
Query: 744 FQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR+DG
Sbjct: 843 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 902
Query: 802 TTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q+ D
Sbjct: 903 KTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 961
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
R +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 962 RCHRVGQTKEVLVIKLISQGTIEESMLK 989
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 334 (122.6 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 787 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 840
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 841 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 952
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 953 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1002
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 285 (105.4 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1061 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1120
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1121 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1181 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1231
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1232 EENEEEDEVPDDETLNQMI 1250
Score = 44 (20.5 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1293 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1344
Score = 40 (19.1 bits), Expect = 5.0e-18, Sum P(3) = 5.0e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 668 LLDPNSEEVSEKDAKQIIETAKQD 691
Score = 38 (18.4 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 432 EARMTEKLEKQQKIEQERKRR 452
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 526 (190.2 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 162/570 (28%), Positives = 283/570 (49%)
Query: 357 GLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGN--MLFPHQREGLRWLWSLHCQG 414
GL++ ++ S +++D + GP S P + + L P+Q GL WL LH
Sbjct: 390 GLMSKCEEISV-KLIQDVTQVMDKGPGSMTQ-PEILSSTFQLKPYQLIGLNWLVLLHQNK 447
Query: 415 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIRE 474
GIL D+MGLGKT+Q FLA L+ L+ P + L +W++EL S K+
Sbjct: 448 LSGILADEMGLGKTIQAISFLAHLYQEGNHGPHLITVPASTLDNWVRELNLWCPSFKVLV 507
Query: 475 YFGTCV--KTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMI 532
Y+G+ K +YE+ + + ++++TY++ NS S F + +Y +
Sbjct: 508 YYGSADDRKYMRYEILNQIVEYNIIVSTYNLAIGNSSDR--SLFCKLKL-------EYAV 558
Query: 533 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 592
DEGHL+KN ++ R + L+ I + +R++++GTP+QNNL EL +L NF P + +
Sbjct: 559 FDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSST--S 616
Query: 593 EKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFH-----EDDVTSS 647
+ ++ ++ +++ + RI A K + ++P+ LRR+K+EV E+ V
Sbjct: 617 QIAKMFSMKSSEEQSSFERDRITHA--KLI---MKPFILRRVKSEVLKQLPAKEEQVEFC 671
Query: 648 ATLSKKNEMIVWL--RLTSCQRQLYEAFLNSEIVLSAFDGSPLAA---LTILKKICDHPL 702
A ++ E+ L +L N + L PL T K L
Sbjct: 672 AMSERQQELYSALLHKLKHSSNGEKRELTNVMMQLRKMSNHPLLHRQFYTTEKLKAMSKL 731
Query: 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH--IADVAEKDDFQEQHDNI--SCKISFI 758
+L + + D D L ED + +H + ++Q D + S K+S +
Sbjct: 732 MLKEPSHRDA----DPALIKEDMEVLSDFELHRLCQQYSALHEYQLNTDVLLDSGKLSLL 787
Query: 759 LSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG 818
LL+ L +G V++FSQ ML++++ + +++ R+DG+T SDR+ +++ F
Sbjct: 788 TQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTD 847
Query: 819 DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMT 878
+FLL+++ GGLG+ LT A+ VI+ D NP D Q+ R +R+GQ K V V +L++
Sbjct: 848 QDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLIS 907
Query: 879 CGTVEEKIYR--KQIFKGGLFKTATEHKEQ 906
++E+ + R ++ K TAT+ E+
Sbjct: 908 KDSIEDTMLRIGERKLKLEQEMTATQDGEE 937
Score = 63 (27.2 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 35/116 (30%), Positives = 52/116 (44%)
Query: 212 GGVVESVADEYEESKGDDVADEEQ---ETENVGIGLKRNEPR-------W-VDNNLVSAR 260
GG V S AD+ EE +G D+E+ + + L +NE R W +D+ L + R
Sbjct: 158 GGRV-SAADDSEE-EGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEHDWLIDDALETLR 215
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQK-----KNEPKRVHDGER 311
+ ++ E+D S +H RV ET+ Q K K +P R DG R
Sbjct: 216 MFSDLVVESEDDSSQTSTPA--KHTRRVAETRPQAQVTKLSSPPKPKPSRPLDGTR 269
Score = 53 (23.7 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 22 VLSRDHDHVESRSVIDEEKPQKVKIEGR-RRLCKVSSRDVDNTENRAVVDDEPN----FS 76
V + D E + D+E+ + K++ + L K RDV E+ ++DD FS
Sbjct: 161 VSAADDSEEEGQRSKDQERMLR-KLQRKFPHLNKNELRDVLQ-EHDWLIDDALETLRMFS 218
Query: 77 DITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAK 121
D+ +S S S +R V + P+ + +T SPPK K
Sbjct: 219 DLV-VESEDDSSQTSTPAK-HTRRVAETRPQ-AQVTKLSSPPKPK 260
Score = 41 (19.5 bits), Expect = 1.4e-48, Sum P(3) = 1.4e-48
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 24 SRDHDHV-ESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDN 62
S DH+ ES SVI E P+ + G +S D D+
Sbjct: 10 SSDHEEPPESDSVIPET-PETKRPSGSSLSTAISDSDSDS 48
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 295 (108.9 bits), Expect = 2.5e-48, Sum P(4) = 2.5e-48
Identities = 83/247 (33%), Positives = 128/247 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 457
+Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L L+V P + L+
Sbjct: 487 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLLTTYDIVRNNSKSL 511
W +E + Y G + R+YE + + L+TTY+I+ + K++
Sbjct: 547 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 605
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
GS I+ W ++ +DE H +KN + K+L++ S HR++I+GTP+QN+LK
Sbjct: 606 LGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLK 654
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L +F PE F E +E + H RE S L + ++P+ L
Sbjct: 655 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 698
Query: 632 RRLKNEV 638
RR+K +V
Sbjct: 699 RRVKKDV 705
Score = 283 (104.7 bits), Expect = 2.5e-48, Sum P(4) = 2.5e-48
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 790 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 849
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 850 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 909
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 910 VNIYRLVTKGTVEEEIIER 928
Score = 81 (33.6 bits), Expect = 2.5e-48, Sum P(4) = 2.5e-48
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 687 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 738
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 739 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 785
Score = 42 (19.8 bits), Expect = 2.5e-48, Sum P(4) = 2.5e-48
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R+ D DD
Sbjct: 156 SEDEQEQGTSAESEAEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDD 210
Score = 37 (18.1 bits), Expect = 4.5e-22, Sum P(3) = 4.5e-22
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 191 VKKQPKTQRGKRKRQDSSDDDD 212
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 290 (107.1 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 67/171 (39%), Positives = 103/171 (60%)
Query: 734 HIADVAEKDDFQ--EQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 791
++ D E + F+ E S K+S + S+L L GH+VL+FSQ +ML+++Q+ +
Sbjct: 315 YLFDGVEPEPFEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEY 374
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 851
+GY + R+DG+ + +R + +F DV IFLL+++ GG+G+ LT AD VI VD +N
Sbjct: 375 RGYSYERLDGSVRGEERNLAIKNFSTKDVF-IFLLSTKAGGVGMNLTAADTVIFVDGDFN 433
Query: 852 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
P D Q+ RA+RIGQ + V V RL+ T+EE IY + + K L T E
Sbjct: 434 PQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIE 484
Score = 251 (93.4 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 82/251 (32%), Positives = 129/251 (51%)
Query: 396 LFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPK 453
L P+Q +G++WL SL + + G ILGD+MGLGKT Q LA S ++ LV+ P
Sbjct: 35 LRPYQLDGVKWL-SLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPL 93
Query: 454 TLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTTYDIVRNNSKS 510
+L +W +EL S + Y G K ++ ELQ L+ VLLTTY++ +++
Sbjct: 94 AVLENWRQELERFCPSLSVICYTGD--KEKRAELQQNLKSDPRFHVLLTTYEMCLKDARY 151
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
L+ W +++DE H +KN + ++L E R++++GTPIQNNL
Sbjct: 152 LKSWK------------WKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNL 199
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
+E+++L F P + + E E + N + E A+ EL + +QP+
Sbjct: 200 QEVYSLLTFIQPSV-----FLPEAVEDFV---NAYADIQTEP----ALVDELHQVLQPFL 247
Query: 631 LRRLKNEVFHE 641
LRR+K EV E
Sbjct: 248 LRRVKAEVAAE 258
Score = 107 (42.7 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 617 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNS 676
A+ EL + +QP+ LRR+K EV +A L KK E++V+ L++ Q++ Y+A L
Sbjct: 234 ALVDELHQVLQPFLLRRVKAEV--------AAELPKKTELVVFHGLSALQKRYYKAILMR 285
Query: 677 EIVLSAFDGSP----LAALTILKKICDHPLL 703
++ D S L L L+K DHP L
Sbjct: 286 DLDAFRTDQSTKTRLLNVLMQLRKCVDHPYL 316
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 539 (194.8 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 150/511 (29%), Positives = 267/511 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL LH G GIL D+MGLGKT+Q FLA ++ L+V P +
Sbjct: 433 LKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPHLIVVPAST 492
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQY---ELQYVLQDKGVLLTTYDIVRNNSKSLR 512
L +WI+E+ + Y+ + R++ ++ + D V++TTY+ ++S
Sbjct: 493 LDNWIREVNLWCPELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTYNCAISSSDDR- 551
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
S F + +Y I DEGH++KN S+ R + L+ I + HR++++GTP+QNNL E
Sbjct: 552 -SLFRKVKL-------NYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLE 603
Query: 573 LWALFNFCCPELLGDN-KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
L +L NF P + + + + ++ ++E RI A AK++ I+P+ L
Sbjct: 604 LMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKE-RI--AHAKQI---IKPFIL 657
Query: 632 RRLKNEVFHE----DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP 687
RR+K+EV + D +S+K E + L ++ + NS++ +
Sbjct: 658 RRVKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKLKKTMKGNEKNSDMGNAMMQLRK 717
Query: 688 LAALTILKK---ICDHPLLLTKRAAEDVL--DGMDSMLNPEDAALAEKLAMHIA--DVAE 740
+A +L + D ++K ++ D ++ ED + +H+ +
Sbjct: 718 MANHPLLHRHYYTADKLKTMSKLMLKEPTHCDANPDLIF-EDMTVMTDFELHLLCKQYSH 776
Query: 741 KDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
DF+ D I S K + LL L +G V++FSQ +L++++ + ++++R
Sbjct: 777 VSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIR 836
Query: 799 IDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857
+DG T+ SDR+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q
Sbjct: 837 LDGKTQISDRIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 895
Query: 858 SVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ DR +R+GQ ++V V +L++ GT+EE + +
Sbjct: 896 AEDRCHRVGQTREVKVIKLISKGTIEESMLK 926
Score = 44 (20.5 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 318 VSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDS 369
VS +E D +++S + D+ +L K+AH N L D +D+
Sbjct: 41 VSASKENKAPRKDVILISEDS--SEDDQPVYQLQKAAHMNNGNQLVDLQEDA 90
Score = 38 (18.4 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 25/95 (26%), Positives = 33/95 (34%)
Query: 287 RVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE-EYDDEDDCVIVSGKLVVNRPD- 344
R H H R+ +DG F S VS E + D V K + +
Sbjct: 210 REHNWVFHEAREALRVFAEDNDGVGFPSPSEVSNWTEVSANSRSDKKKVQQKRKFSGKEQ 269
Query: 345 ---RRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGS 376
R+ K + S V D D+S ED GS
Sbjct: 270 NCLRKKHKAKANVWSTKTEVQDS-EDESAAEDGGS 303
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 538 (194.4 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 148/508 (29%), Positives = 266/508 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 499 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 558
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 559 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAISSSDDR-- 616
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 617 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 669
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 670 MSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERI--AHAKQI---IKPFILRR 724
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
+K EV + D +S+K E + ++ + N+E+ +A
Sbjct: 725 VKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNTEMCNVMMQLRKMA 784
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNP----EDAALAEKLAMHIA--DVAEKDD 743
+L + L + + + + NP ED + +H+ ++
Sbjct: 785 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 844
Query: 744 FQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR+DG
Sbjct: 845 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 904
Query: 802 TTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q+ D
Sbjct: 905 KTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 963
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
R +R+GQ K+V+V +L+ GT+EE + +
Sbjct: 964 RCHRVGQTKEVLVIKLIGQGTIEESMLK 991
Score = 47 (21.6 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
Identities = 29/142 (20%), Positives = 66/142 (46%)
Query: 14 EVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP 73
+V + +CS ++ + +I E + + +G + ++ D+ N +N + P
Sbjct: 100 DVVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMATRNNNDITNLKNLSFF---P 156
Query: 74 NFSD-ITDFDSPLQSKTVSA--MVNIESRAVIDDGPKFSDITVF-DS----PPKAKTVSE 125
N+SD ++ S+ +S+ + I+S + +D G + + +F D+ P K K S
Sbjct: 157 NYSDNLSTVRQTRYSENLSSDLLKLIDSTSTMD-GAIAAALLMFGDAEGGGPRKRKLSSS 215
Query: 126 NDNYKGGNEIRDILNDLSARLE 147
++ ++ +E D + RL+
Sbjct: 216 SEPFEE-DEFNDDQSMKKKRLD 236
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 296 (109.3 bits), Expect = 3.6e-48, Sum P(4) = 3.6e-48
Identities = 76/202 (37%), Positives = 115/202 (56%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL GH VLIFSQ KML+L+++ + ++GYK+ RIDG R +
Sbjct: 1059 SGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEA 1118
Query: 812 VNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F AP +FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1119 IDRFNAPG-APQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1177
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQG 925
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1178 KVMIYRFVTKASVEERI--TQVAKKKMMLTHLVVRPGLGSKAGSMSKQELDDIL---KFG 1232
Query: 926 FDVSLTQQQLHEEHGDQHNMDE 947
T+Q +E G+ N +E
Sbjct: 1233 -----TEQLFKDELGEGDNKEE 1249
Score = 248 (92.4 bits), Expect = 3.6e-48, Sum P(4) = 3.6e-48
Identities = 77/257 (29%), Positives = 124/257 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 733 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 792
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 793 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAVIRENEFTFEDNAIRGGKKASKMKKEA 851
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
+++ ++ + D AI W +++DE H +KN ++ + L P H+++++
Sbjct: 852 AVKFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLT 911
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---IAKEDQI-----KKL 956
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 957 HDMLGPHMLRRLKADVF 973
Score = 107 (42.7 bits), Expect = 3.6e-48, Sum P(4) = 3.6e-48
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 954 KKLHDMLGPHMLRRLKADVFKH--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 1006 ALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATE 1041
Score = 56 (24.8 bits), Expect = 3.6e-48, Sum P(4) = 3.6e-48
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE-EYDDE 328
EED SE EG ++ KK + + K+ GE+ G S +E E ++E
Sbjct: 74 EEDRVMRSESEGSDYAP---SKKKKKRSSSSKDRKKGSAGEKAGGSGGKSKRKEPEPEEE 130
Query: 329 DD 330
DD
Sbjct: 131 DD 132
Score = 56 (24.8 bits), Expect = 3.6e-48, Sum P(4) = 3.6e-48
Identities = 18/63 (28%), Positives = 24/63 (38%)
Query: 255 NLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNG 314
N R S DGE D S S +G S + KK +KK + DG +
Sbjct: 315 NFKRKRSSSGEEDDGESDFDSFSVSDGSNSRSSRSKNKKAKSSKKKKKMDEDADGYETDH 374
Query: 315 QSF 317
Q +
Sbjct: 375 QDY 377
Score = 49 (22.3 bits), Expect = 1.9e-47, Sum P(4) = 1.9e-47
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHL 285
E E N DG D G + E E D H+
Sbjct: 434 EGEEENDDGRRDDGDVEE-EDDHHM 457
Score = 45 (20.9 bits), Expect = 4.9e-47, Sum P(4) = 4.9e-47
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 267 LDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPK 304
+ G ED E GD+ ++ ET ++KK K
Sbjct: 1 MSGSEDDRDRFEPMGDDIEEQISETDTPKSKKKKKAKK 38
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 296 (109.3 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 87/260 (33%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P +G N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 456 PAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY 515
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
L+V P + L+ W +E + Y G + R+YE + + L+
Sbjct: 516 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 575
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S HR
Sbjct: 576 TTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 623
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 624 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 670
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 671 ---LHKVLEPFLLRRVKKDV 687
Score = 283 (104.7 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 772 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 831
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 832 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 891
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 892 VNIYRLVTKGTVEEEIIER 910
Score = 79 (32.9 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 669 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 720
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 721 ALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEENERENGQEVLLS 767
Score = 46 (21.3 bits), Expect = 5.0e-48, Sum P(4) = 5.0e-48
Identities = 21/102 (20%), Positives = 45/102 (44%)
Query: 216 ESVADEYEESKGDDVADEEQETENVG------IGLKRNEPRWVDNNLVSARESFESNLDG 269
E+ +D+ E G+ V +++ +E + +G K V A S+ D
Sbjct: 218 ETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAVEANGDPSSDFDP 277
Query: 270 EEDGGSLSEV---EGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
E+D G + + +G ++ E+++ Q+QK K++ +
Sbjct: 278 EKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLEN 319
Score = 39 (18.8 bits), Expect = 2.6e-47, Sum P(4) = 2.6e-47
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 292 KKHHQRQKKNEPKR---VHDGERFNGQS 316
K+ QRQ K + KR + D E+ G S
Sbjct: 118 KRRGQRQLKKQEKRKWELSDDEQEQGSS 145
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 541 (195.5 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 150/511 (29%), Positives = 270/511 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 556
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDR-- 614
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 615 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLEL 667
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 668 MSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI--AHAKQI---IKPFILRR 722
Query: 634 LKNEVFHE----DDVTSSATLSKKNEMI---VWLRLTSCQRQLYEA--FLNSEIVLSAFD 684
+K EV + D +S+K E + ++ RL + ++ N + L
Sbjct: 723 VKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMA 782
Query: 685 GSPLA--ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIA--DVAE 740
PL +K+ + L+ K + ++ ED + +H+
Sbjct: 783 NHPLLHRQYYTAEKLKEMSQLMLKEPTH--CEANPDLIF-EDMEVMTDFELHVLCKQYRH 839
Query: 741 KDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
++FQ D I S K + +L +L +G V++FSQ ML++++ + +++LR
Sbjct: 840 INNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 799 IDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 857
+DG T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q
Sbjct: 900 LDGKTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
Query: 858 SVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Score = 42 (19.8 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 30/142 (21%), Positives = 60/142 (42%)
Query: 14 EVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP 73
++ + +CS ++ + +I E + + +G + ++ D+ E+ VDD
Sbjct: 96 DIVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMSGRNNDDISELEDLFTVDDIK 155
Query: 74 NFSDITDFDSPL---QSKTVSAMVNIESRAVIDDGPKFSDITVF-DS----PPKAKTVSE 125
S I Q +T+ IES + +D G + + +F D+ P K K S
Sbjct: 156 G-SKIRHLSREFLRRQCRTLHLKNLIESTSTMD-GAIAAALLMFGDAEGGGPRKRKLSSS 213
Query: 126 NDNYKGGNEIRDILNDLSARLE 147
++ Y+ +E D + RL+
Sbjct: 214 SEPYEE-DEFNDDQSIKKKRLD 234
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 300 (110.7 bits), Expect = 5.5e-48, Sum P(2) = 5.5e-48
Identities = 59/148 (39%), Positives = 94/148 (63%)
Query: 769 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 828
G VL+FS + K+L +++ + Y + +DG+ +R +IV+DF +FL+++
Sbjct: 587 GDKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQFVFLIST 646
Query: 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ GG+GL +T A++V++ DP WNPS D Q+ DRAYRIGQ +DV V+RL++ GT+EE +Y
Sbjct: 647 KAGGVGLNITSANKVVIFDPHWNPSWDLQAQDRAYRIGQTRDVDVFRLVSQGTIEEIVYA 706
Query: 889 KQIFKGGLFKTATEHKEQIRYFS--QQD 914
+QI+K + RYF+ QQD
Sbjct: 707 RQIYKQQQANIGYNASNERRYFTGVQQD 734
Score = 296 (109.3 bits), Expect = 5.5e-48, Sum P(2) = 5.5e-48
Identities = 97/317 (30%), Positives = 148/317 (46%)
Query: 383 RSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF--- 439
RS ++P I L +Q +G+ ++ +G ILGDDMGLGKT+Q+ FL F
Sbjct: 181 RSAGIIPAPIAQYLRDYQVDGVSFMHEAFVYQRGCILGDDMGLGKTVQVAAFLTAAFGKT 240
Query: 440 -------HSRLIKR-------ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY 485
R +KR LVV P +++ +W +EL G K+ Y G +
Sbjct: 241 GDFRDSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARWGWW-KVESYHGP---GKDD 296
Query: 486 ELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 544
L + V+LTT R + + S WD +++DE H IK +
Sbjct: 297 VLDTAKSGRLEVMLTTPATYRLQKERVNTVS------------WDAVVVDECHNIKERRS 344
Query: 545 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD-NKWFKEKYELPILRGN 603
+ K++ E+ + RI ++GT IQN +ELW L N+ P G +W K P+ G
Sbjct: 345 EITKAMTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEW-KTSISRPLTLGQ 403
Query: 604 DKHALDREKRIGSAVAKELRERIQP-YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRL 662
+A +E + AK+L + + P YFLRR+K+ + H+ L KK + +V+ L
Sbjct: 404 SHNATLQELSMARKTAKKLVQNLLPDYFLRRMKSLIAHQ--------LPKKRDRVVFCPL 455
Query: 663 TSCQRQLYEAFLNSEIV 679
T Q YE F+ SE V
Sbjct: 456 TDLQTTAYERFIASEEV 472
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 543 (196.2 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 149/508 (29%), Positives = 266/508 (52%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA LF L+V P +
Sbjct: 492 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPAST 551
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ S + Y+G+ + +Q + + +D V++TTY+ ++S
Sbjct: 552 IDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDR-- 609
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKEL 573
S F + +Y I DEGH++KN + R + L+ I + +R++++GTP+QNNL EL
Sbjct: 610 SLFRRLKL-------NYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLEL 662
Query: 574 WALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
+L NF P + + + + D+ ++ ++RI A AK++ I+P+ LRR
Sbjct: 663 MSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERI--AHAKQI---IKPFILRR 717
Query: 634 LKNEVFH----EDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
+K EV + D +S+K E + ++ + N+E+ +A
Sbjct: 718 VKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMA 777
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNP----EDAALAEKLAMHIA--DVAEKDD 743
+L + P L + + + + NP ED + +H+ +
Sbjct: 778 NHPLLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHINS 837
Query: 744 FQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
+Q D I S K + +L +L +G V++FSQ ML++++ + +++LR+DG
Sbjct: 838 YQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 897
Query: 802 TTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 860
T+ S+R+ ++++F + D+ +FLL+++ GGLG+ LT A+ VI+ D NP D Q+ D
Sbjct: 898 KTQISERIHLIDEFNTDMDIF-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 956
Query: 861 RAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
R +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 957 RCHRVGQTKEVLVIKLISQGTIEESMLK 984
Score = 39 (18.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 295 HQRQKKN--EPKR-VHDGERFNGQSFVSGGREEY 325
++++KKN PK+ V D E +G S E+Y
Sbjct: 336 NKKRKKNVFNPKKAVEDSEYDSGSDAGSSLDEDY 369
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 296 (109.3 bits), Expect = 6.7e-48, Sum P(4) = 6.7e-48
Identities = 87/260 (33%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P +G N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 476 PAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLY 535
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
L+V P + L+ W +E + Y G + R+YE + + L+
Sbjct: 536 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S HR
Sbjct: 596 TTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 643
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 644 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 690
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 691 ---LHKVLEPFLLRRVKKDV 707
Score = 283 (104.7 bits), Expect = 6.7e-48, Sum P(4) = 6.7e-48
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 792 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 851
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 852 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 911
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 912 VNIYRLVTKGTVEEEIIER 930
Score = 81 (33.6 bits), Expect = 6.7e-48, Sum P(4) = 6.7e-48
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 689 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 740
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 741 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 787
Score = 43 (20.2 bits), Expect = 6.7e-48, Sum P(4) = 6.7e-48
Identities = 19/102 (18%), Positives = 44/102 (43%)
Query: 216 ESVADEYEESKGDDVADEEQETENVG------IGLKRNEPRWVDNNLVSARESFESNLDG 269
E+ +D+ E G+ V +++ +E + +G K + A + D
Sbjct: 238 ETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDS 297
Query: 270 EEDGGSLSEV---EGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
E+D G + + +G ++ E+++ Q+QK K++ +
Sbjct: 298 EKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLEN 339
Score = 42 (19.8 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R++ D DD
Sbjct: 155 SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDD 209
Score = 37 (18.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 190 VKKQPKTQRGKRKKQDSSDDDD 211
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 295 (108.9 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 83/247 (33%), Positives = 128/247 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 457
+Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L L+V P + L+
Sbjct: 456 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 515
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLLTTYDIVRNNSKSL 511
W +E + Y G + R+YE + + L+TTY+I+ + K++
Sbjct: 516 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 574
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
GS I+ W ++ +DE H +KN + K+L++ S HR++I+GTP+QN+LK
Sbjct: 575 LGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLK 623
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L +F PE F E +E + H RE S L + ++P+ L
Sbjct: 624 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 667
Query: 632 RRLKNEV 638
RR+K +V
Sbjct: 668 RRVKKDV 674
Score = 283 (104.7 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 759 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 818
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 819 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 878
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 879 VNIYRLVTKGTVEEEIIER 897
Score = 81 (33.6 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 656 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 707
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 708 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 754
Score = 42 (19.8 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R+ D DD
Sbjct: 140 SEDEQEQGTSAESEAEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDD 194
Score = 37 (18.1 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 175 VKKQPKTQRGKRKRQDSSDDDD 196
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 287 (106.1 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 1023 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1082
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1083 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1142
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1143 VMIYRFVTRASVEERI 1158
Score = 242 (90.2 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 697 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 756
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 757 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 816
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 817 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 876
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 921
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 922 DLLGPHMLRRLKADVF 937
Score = 109 (43.4 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 918 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 969
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 970 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 1005
Score = 66 (28.3 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLD----GEEDGGSLSE 278
EE G + D+ E V + K+ + +N R+ E + D EED SE
Sbjct: 28 EEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLEEKSE 87
Query: 279 VEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
EG ++ + KK +++KK + K+ + E N
Sbjct: 88 SEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDN 123
Score = 58 (25.5 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 869 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 922
Score = 47 (21.6 bits), Expect = 6.4e-23, Sum P(4) = 6.4e-23
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 715 GMDSMLNPEDAALAEKLAMHIADVAEKDDFQE-QHDNISCKISFILSLLDKLIPEGHNV 772
G S L P+D EK + +K++ E + ++ K F+ ++ D E H +
Sbjct: 1660 GDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGKFKFMFNIADGGFTELHTL 1718
Score = 38 (18.4 bits), Expect = 6.4e-45, Sum P(4) = 6.4e-45
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 264 ESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE 323
E + EEDGG +E + V KK +PK++ + + + G +
Sbjct: 22 EDEMSEEEDGG----LEAFDDFFPVEPVSL----PKKKKPKKLKENKCKGKRKKKEGSND 73
Query: 324 EY-DDEDD 330
E ++E+D
Sbjct: 74 ELSENEED 81
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 296 (109.3 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 87/260 (33%), Positives = 134/260 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P +G N+ L +Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 474 PAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLY 533
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLL 498
L+V P + L+ W +E + Y G + R+YE + + L+
Sbjct: 534 GPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S HR
Sbjct: 594 TTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHR 641
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 642 LLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-- 688
Query: 619 AKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 689 ---LHKVLEPFLLRRVKKDV 705
Score = 283 (104.7 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 790 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 849
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 850 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 909
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 910 VNIYRLVTKGTVEEEIIER 928
Score = 81 (33.6 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 687 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 738
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 739 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785
Score = 42 (19.8 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYD--DEDD 330
SE E ++ S E ++ + ++ P+R R Q G R++ D DEDD
Sbjct: 156 SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDD 212
Score = 42 (19.8 bits), Expect = 8.5e-48, Sum P(4) = 8.5e-48
Identities = 19/102 (18%), Positives = 44/102 (43%)
Query: 216 ESVADEYEESKGDDVADEEQETENVG------IGLKRNEPRWVDNNLVSARESFESNLDG 269
E+ +D+ E G+ V +++ +E + +G K + A + D
Sbjct: 239 ETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDT 298
Query: 270 EEDGGSLSEV---EGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
E+D G + + +G ++ E+++ Q+QK K++ +
Sbjct: 299 EKDEGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLEN 340
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 334 (122.6 bits), Expect = 9.3e-48, Sum P(4) = 9.3e-48
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 817
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 818 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 929
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 930 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 979
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 285 (105.4 bits), Expect = 9.3e-48, Sum P(4) = 9.3e-48
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1038 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1097
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1098 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1158 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1208
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1209 EENEEEDEVPDDETLNQMI 1227
Score = 46 (21.3 bits), Expect = 6.2e-18, Sum P(4) = 6.2e-18
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE++ +G +S L P+ + E M
Sbjct: 547 KKKAEEIAEGGESALGPDGEPIDESSQM 574
Score = 44 (20.5 bits), Expect = 5.6e-23, Sum P(4) = 5.6e-23
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1270 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1321
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 645 LLDPNSEEVSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 9.3e-48, Sum P(4) = 9.3e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK +++ K K+ + + K
Sbjct: 1505 IKLNKKDEKGRDKGKGKKRPNRGKAK 1530
Score = 38 (18.4 bits), Expect = 9.3e-48, Sum P(4) = 9.3e-48
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 409 EARMTEKLEKQQKIEQERKRR 429
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 334 (122.6 bits), Expect = 9.9e-48, Sum P(4) = 9.9e-48
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 817
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 818 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 929
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 930 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 979
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 285 (105.4 bits), Expect = 9.9e-48, Sum P(4) = 9.9e-48
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1038 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1097
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1098 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1158 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1208
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1209 EENEEEDEVPDDETLNQMI 1227
Score = 46 (21.3 bits), Expect = 6.5e-18, Sum P(4) = 6.5e-18
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE++ +G +S L P+ + E M
Sbjct: 547 KKKAEEIAEGGESALGPDGEPIDESSQM 574
Score = 44 (20.5 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1270 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1321
Score = 40 (19.1 bits), Expect = 2.6e-17, Sum P(4) = 2.6e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 645 LLDPNSEEVSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 9.9e-48, Sum P(4) = 9.9e-48
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK +++ K K+ + + K
Sbjct: 1523 IKLNKKDEKGRDKGKGKKRPNRGKAK 1548
Score = 38 (18.4 bits), Expect = 9.9e-48, Sum P(4) = 9.9e-48
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 409 EARMTEKLEKQQKIEQERKRR 429
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 295 (108.9 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 83/247 (33%), Positives = 128/247 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 457
+Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L L+V P + L+
Sbjct: 490 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 549
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLLTTYDIVRNNSKSL 511
W +E + Y G + R+YE + + L+TTY+I+ + K++
Sbjct: 550 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 608
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
GS I+ W ++ +DE H +KN + K+L++ S HR++I+GTP+QN+LK
Sbjct: 609 LGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLK 657
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L +F PE F E +E + H RE S L + ++P+ L
Sbjct: 658 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 701
Query: 632 RRLKNEV 638
RR+K +V
Sbjct: 702 RRVKKDV 708
Score = 283 (104.7 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 793 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 852
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 853 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 912
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 913 VNIYRLVTKGTVEEEIIER 931
Score = 81 (33.6 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 690 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 741
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 742 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 788
Score = 42 (19.8 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R+ D DD
Sbjct: 156 SEDEQEQGTSAESEAEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDD 210
Score = 37 (18.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 191 VKKQPKTQRGKRKRQDSSDDDD 212
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 295 (108.9 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 83/247 (33%), Positives = 128/247 (51%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 457
+Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L L+V P + L+
Sbjct: 500 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 559
Query: 458 HWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLLTTYDIVRNNSKSL 511
W +E + Y G + R+YE + + L+TTY+I+ + K++
Sbjct: 560 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 618
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
GS I+ W ++ +DE H +KN + K+L++ S HR++I+GTP+QN+LK
Sbjct: 619 LGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLK 667
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L +F PE F E +E + H RE S L + ++P+ L
Sbjct: 668 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 711
Query: 632 RRLKNEV 638
RR+K +V
Sbjct: 712 RRVKKDV 718
Score = 283 (104.7 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 803 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 862
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 863 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 922
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 923 VNIYRLVTKGTVEEEIIER 941
Score = 81 (33.6 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 700 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 751
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 752 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 798
Score = 42 (19.8 bits), Expect = 1.1e-47, Sum P(4) = 1.1e-47
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R+ D DD
Sbjct: 169 SEDEQEQGTSAESEAEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKRQDSSDD 223
Score = 37 (18.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 204 VKKQPKTQRGKRKRQDSSDDDD 225
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 299 (110.3 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 62/179 (34%), Positives = 101/179 (56%)
Query: 752 SCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810
S K+ L D N V++F+Q R ++ +++ + KG K + + G A+ R K
Sbjct: 520 SGKVEMTFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPK 579
Query: 811 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
I+ F++ +FL+T++ GGLGL LT A++VI+ DP WNP DNQ+ +R YR+GQ D
Sbjct: 580 IIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTND 639
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVS 929
V +YRL++ GT+E+ + KQ+ K L + E ++ L +L L +G + S
Sbjct: 640 VAIYRLVSNGTIEDLKFFKQVQKENLAARLLHNAEIDQFVPNNTLADLFRLKPKGLEGS 698
Score = 292 (107.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 97/332 (29%), Positives = 153/332 (46%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-----FHSRL--I 444
+ N L Q+EG+ WL GGIL D+MGLGKT+Q FL + H + +
Sbjct: 190 VWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGL 249
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV------LQ------ 492
AL+V ++++ WIKEL A++ C RQ + YV LQ
Sbjct: 250 DTALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQED--YVGSIFRKLQRRRKEY 307
Query: 493 -DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551
D ++LTTY + K + + +W +ILDEGH I+N +T+ + ++
Sbjct: 308 PDGAIILTTYSLFTKLKKPI-----VKH-------LWQVVILDEGHYIRNENTKCSIAMR 355
Query: 552 EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDRE 611
++ + R I++GTP QN L E W L +F P L D+ F + I G + +
Sbjct: 356 KLMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEA 415
Query: 612 KRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYE 671
L ++P LRRL+ + H++ + L +K E+++ L+ QR+LY
Sbjct: 416 AAKAYECLVALHIAVKPLILRRLQED--HKEVLQ----LPEKQEIVLSCELSKRQRRLYM 469
Query: 672 AFLNSEIVLSAFDGSPLAALTI--LKKICDHP 701
+ NS V + A + I L IC+HP
Sbjct: 470 EYGNSHQVNEIIERRLKAFVGINHLTNICNHP 501
Score = 48 (22.0 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 505 RNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--KNPSTQRAKS 549
R S+ S F+ E DDD +Y +L++ K+ S+ R+ S
Sbjct: 81 RKKSRRSDSSEFVPSEESDDDE--EYEVLEKSRKKGRKSGSSSRSSS 125
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 304 (112.1 bits), Expect = 1.3e-47, Sum P(4) = 1.3e-47
Identities = 89/257 (34%), Positives = 131/257 (50%)
Query: 390 GKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRAL 448
G+ + L +Q EGL W+ C+G IL D+MGLGKT+Q LA LFH L L
Sbjct: 399 GESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYL 458
Query: 449 VVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK----GVLLTTY 501
VV P + ++ W KE + Y G V RQYE +V K +LTTY
Sbjct: 459 VVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEW-FVGGTKKMKINAILTTY 517
Query: 502 DIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
+I+ L+ +F+S D W +++DE H +KN + KSL + H+++I
Sbjct: 518 EIL------LKDKAFLSSI---D---WAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLI 565
Query: 562 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
+GTP+QN+LKELWAL +F PE + W E++E H K I +
Sbjct: 566 TGTPLQNSLKELWALLHFIMPEKF--DCW--EEFETA-------HNESNHKGISA----- 609
Query: 622 LRERIQPYFLRRLKNEV 638
L ++++P+ LRR+K +V
Sbjct: 610 LHKKLEPFLLRRVKKDV 626
Score = 271 (100.5 bits), Expect = 1.3e-47, Sum P(4) = 1.3e-47
Identities = 64/153 (41%), Positives = 94/153 (61%)
Query: 742 DDFQEQHDNISCKISFILSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
DD Q + + K S L LLDKL+ +GH VLIFSQ ML+++QE + + +
Sbjct: 697 DDAQGRLQQL-LKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQ 755
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DG+ +A R + ++ + G FLL+++ GGLG+ L AD VI+ D WNP D
Sbjct: 756 RLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDL 815
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
Q++ RA+RIGQ K V +YRL+T G+VEE+I +
Sbjct: 816 QAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVER 848
Score = 80 (33.2 bits), Expect = 1.3e-47, Sum P(4) = 1.3e-47
Identities = 40/175 (22%), Positives = 71/175 (40%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
E V +E E +G+ +++ E E + + + D++ S S S D
Sbjct: 21 EPVREE-ENPEGNSTSEDNDEKEKAADSPESSSDQSDDSDDASENSS-SSEPDEPAPKKK 78
Query: 276 LSEVEG-DEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIV 334
+ G D ++ E + + +R K++ KR D N + S +++DD
Sbjct: 79 NNNNRGMDAETRKLLENENYFRRSKRS--KRQDDSPSDNSEESQSS-EDDWDDRRKPRRT 135
Query: 335 SGKLVVNRPDRRDGKLNKSAHSGLVNVL-----DDYSDDSVLE--DEGSITLSGP 382
K VV + + + + + G VN DD DD VLE +E ++ GP
Sbjct: 136 VTKKVVKQTKKAVSVVKRKSVKGNVNYAEKNSDDDIDDDDVLEWDEEPAVPAEGP 190
Score = 76 (31.8 bits), Expect = 6.0e-27, Sum P(5) = 6.0e-27
Identities = 31/124 (25%), Positives = 55/124 (44%)
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIV 679
L ++++P+ LRR+K +V +L K E I+ + +T+ Q+Q Y+ L N +
Sbjct: 610 LHKKLEPFLLRRVKKDV--------EKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL 661
Query: 680 LSAFDGSPLAALTI---LKKICDHPLLLTK--RAAEDVLDGMDSMLNPEDAA-LAEKLAM 733
GS + + LKK C+H L + +D + +L L +KL
Sbjct: 662 SKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLILLDKLLC 721
Query: 734 HIAD 737
+ D
Sbjct: 722 RLKD 725
Score = 46 (21.3 bits), Expect = 4.7e-25, Sum P(3) = 4.7e-25
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 882 VEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGD 941
V+ ++KQ +K L K E + ++ + ++ L K SLT+Q H
Sbjct: 640 VDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDA 699
Query: 942 QHNMDESLEAH--IQFLDTL--GIAGVSHHSLLFSK 973
Q + + L++ + LD L + H L+FS+
Sbjct: 700 QGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQ 735
Score = 44 (20.5 bits), Expect = 6.7e-44, Sum P(4) = 6.7e-44
Identities = 26/100 (26%), Positives = 37/100 (37%)
Query: 31 ESRSVIDEEKPQKVKIEGRRRLC-KVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKT 89
ES S D E +K R + +S DN E D + SD +D DS
Sbjct: 6 ESSSGSDAEPDEKTDEPVREEENPEGNSTSEDNDEKEKAADSPESSSDQSD-DSD----- 59
Query: 90 VSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNY 129
A N S + PK + + + + EN+NY
Sbjct: 60 -DASENSSSSEPDEPAPKKKNNNNRGMDAETRKLLENENY 98
Score = 41 (19.5 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 114 FDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKT 159
FD + +T N+KG + + L R ++K PKT
Sbjct: 589 FDCWEEFETAHNESNHKGISALHKKLEPFLLRRVKKDVEKSLPPKT 634
Score = 40 (19.1 bits), Expect = 1.3e-47, Sum P(4) = 1.3e-47
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 898 KTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMD 946
K A +HKE+ R ++D RE ++ T + H EH H+ D
Sbjct: 1403 KEAKDHKERDR---EKD-RERNRGERRMDHGEGTSKDHHREHHKDHHKD 1447
Score = 39 (18.8 bits), Expect = 2.2e-43, Sum P(4) = 2.2e-43
Identities = 35/141 (24%), Positives = 56/141 (39%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNT 63
+D+K ++ ++D S S D S S DE P+K K R + + + ++N
Sbjct: 38 NDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKK-KNNNNRGMDAETRKLLEN- 95
Query: 64 ENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIES---RAVIDDGPKFSDITVFDSPPKA 120
EN D + D+ +S++ + R V K + V S K
Sbjct: 96 ENYFRRSKRSKRQDDSPSDNSEESQSSEDDWDDRRKPRRTVTKKVVKQTKKAV--SVVKR 153
Query: 121 KTVSENDNYKGGNEIRDILND 141
K+V N NY N DI +D
Sbjct: 154 KSVKGNVNYAEKNSDDDIDDD 174
Score = 37 (18.1 bits), Expect = 6.0e-27, Sum P(5) = 6.0e-27
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 836 TLTKADRVIVVDPAWNPSTDNQSVDRAYRIG-QKKDVV 872
TL AD++ + D P N V Y + KD V
Sbjct: 1184 TLGLADKIFIKDKTKKPQGKNLQVRVDYLLKLMSKDKV 1221
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 331 (121.6 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 94/331 (28%), Positives = 164/331 (49%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKR 446
+P + L P+Q+ G+ WL L G G +L DDMGLGK++Q +L + + L
Sbjct: 443 VPSSLHATLRPYQQHGIEWLLYLRKLGFGALLADDMGLGKSIQTITYLLYIKENNLQTGP 502
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRN 506
AL+VAP ++L +W KE + +++ ++G+ + + + LQ V+LT+Y + +
Sbjct: 503 ALIVAPTSVLGNWQKEFERFAPNLRVQLHYGSN-RAKGESFKDFLQSADVVLTSYALAQL 561
Query: 507 NSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566
+ + L WD +ILDE IKNP T+++K++ + + H+I ++GTP+
Sbjct: 562 DEEEL------------STLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPM 609
Query: 567 QNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 626
+N L ELW++F+F LG F+ ++ PI + D+ + + +R I
Sbjct: 610 ENRLAELWSIFDFINHGYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRF-----------I 658
Query: 627 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD-- 684
P+ LRR K + ++ +K + S QL + L + LS +
Sbjct: 659 SPFLLRRTKKDQTVALNLPDKQ--EQKAYCPLTGEQASLYEQLVQDTLQNVEGLSGIERR 716
Query: 685 GSPLAALTILKKICDHPLLLTKRAA-EDVLD 714
G L L LK+IC+HP L K +D+++
Sbjct: 717 GFILLMLNKLKQICNHPALYLKETEPKDIIE 747
Score = 267 (99.0 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 65/191 (34%), Positives = 105/191 (54%)
Query: 732 AMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 791
A+++ + KD + S K S ++ L++ + + + LIF+Q M N+++ +
Sbjct: 734 ALYLKETEPKDIIER-----SMKTSTLMELIENIKDQNESCLIFTQYIGMGNMLKNVLEE 788
Query: 792 K-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW 850
G + L ++G+ +R K++ FQ G IF+L+ + GG GL LT A+ VI D W
Sbjct: 789 HFGQRVLFLNGSVPKKERDKMIEQFQNGTY-DIFILSLKAGGTGLNLTAANHVIHYDRWW 847
Query: 851 NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
NP+ +NQ+ DRAYRIGQK+ V V++L+T GT+EEKI K L +
Sbjct: 848 NPAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITSDSWMTEL 907
Query: 911 SQQDLRELLSL 921
S +L+ELL +
Sbjct: 908 STDELKELLGV 918
Score = 38 (18.4 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 55 VSSRDVDNTENRAVVDDEPNFSDI 78
V + + NT +V+++ F+DI
Sbjct: 394 VLQQHLSNTAETEIVEEDSPFNDI 417
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 334 (122.6 bits), Expect = 1.7e-47, Sum P(4) = 1.7e-47
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 787 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 840
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 841 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 952
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 953 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1002
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 285 (105.4 bits), Expect = 1.7e-47, Sum P(4) = 1.7e-47
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1061 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1120
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1121 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1181 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1231
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1232 EENEEEDEVPDDETLNQMI 1250
Score = 44 (20.5 bits), Expect = 1.0e-22, Sum P(4) = 1.0e-22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1293 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1344
Score = 40 (19.1 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 668 LLDPNSEEVSEKDAKQIIETAKQD 691
Score = 38 (18.4 bits), Expect = 1.7e-47, Sum P(4) = 1.7e-47
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 432 EARMTEKLEKQQKIEQERKRR 452
Score = 37 (18.1 bits), Expect = 1.7e-47, Sum P(4) = 1.7e-47
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK ++ K K+ + + K
Sbjct: 1546 IKLNKKEEKGRDTGKGKKRPNRGKAK 1571
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 291 (107.5 bits), Expect = 1.9e-47, Sum P(4) = 1.9e-47
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 746 EQH--DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT 803
+QH DN S K+ + LL K +G VLIFSQ +ML+L+++ + Y++ R+DG+T
Sbjct: 427 DQHLVDN-SGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGST 485
Query: 804 KASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862
DR + + D IF+LT++ GGLG+ L AD VI+ D WNP +D Q++DRA
Sbjct: 486 PHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRA 545
Query: 863 YRIGQKKDVVVYRLMTCGTVEEKIYRK 889
+RIGQKK V V+RL+T TV+E+I K
Sbjct: 546 HRIGQKKQVRVFRLITENTVDERIIEK 572
Score = 282 (104.3 bits), Expect = 1.9e-47, Sum P(4) = 1.9e-47
Identities = 86/300 (28%), Positives = 140/300 (46%)
Query: 342 RPDRRDGKLNKSAHSGLVNVLDDYS-DDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQ 400
RP +++G H D+ D++ D+ I P Y+ G++ + +Q
Sbjct: 83 RPSKKNGIDGDHRHRKTEQEEDEEMVADAIKSDDLVIFDKSP--FYIENGEMRD----YQ 136
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHW 459
GL WL SL GIL D+MGLGKT+Q + + H + LV+ PK+ L +W
Sbjct: 137 VRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNW 196
Query: 460 IKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFIS 518
E S G Q +L K V TTY+++ L+ +
Sbjct: 197 ANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLN--- 253
Query: 519 DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578
W Y+I+DE H IKN ++ ++++ E+ S +R++I+GTP+QNNL ELWAL N
Sbjct: 254 ---------WRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLN 304
Query: 579 FCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
F P++ + F + + GN + + + L + +QP+ LRR+K++V
Sbjct: 305 FLLPDIFTSSDDFDSWFSNDAMSGN------------TDLVQRLHKVLQPFLLRRIKSDV 352
Score = 71 (30.1 bits), Expect = 1.9e-47, Sum P(4) = 1.9e-47
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 618 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE 677
+ + L + +QP+ LRR+K++V +L K E+ V++ L+ QR+ Y L +
Sbjct: 332 LVQRLHKVLQPFLLRRIKSDV--------EKSLLPKKEVKVYVGLSKMQREWYTKVLMKD 383
Query: 678 IVLSAFDGSPLAA-----LTILKKICDHPLL 703
I + G A L L+K +HP L
Sbjct: 384 IDIINGAGKVEKARLMNILMHLRKCVNHPYL 414
Score = 41 (19.5 bits), Expect = 1.9e-47, Sum P(4) = 1.9e-47
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 69 VDDEPNFSDITD 80
VDDEP SD D
Sbjct: 33 VDDEPESSDAAD 44
Score = 41 (19.5 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 97 ESRAVIDDGPKFSDITVFDSPP 118
E ++ D K D+ +FD P
Sbjct: 103 EDEEMVADAIKSDDLVIFDKSP 124
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 294 (108.6 bits), Expect = 2.3e-47, Sum P(5) = 2.3e-47
Identities = 87/254 (34%), Positives = 128/254 (50%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVA 451
G L +Q +GL WL C+ IL D+MGLGKT+Q FL LF L L V
Sbjct: 525 GLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVV 584
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTR----QYELQYVLQDK---GVLLTTYDIV 504
P + ++ W +E + Y G +K+R QYE Q+ + +LTTY+IV
Sbjct: 585 PLSTMTAWQREFDLWAPDMNVVTYLGD-IKSRELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 505 RNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 564
L+ F+ W +++DE H +KN + KSL E + HR++I+GT
Sbjct: 644 ------LKDKQFLGTLQ------WAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGT 691
Query: 565 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624
P+QN+LKELWAL +F P+ + W E +E + GN A D+ G L +
Sbjct: 692 PLQNSLKELWALLHFIMPDKF--DTW--ENFE--VQHGN---AEDK----GYT---RLHQ 735
Query: 625 RIQPYFLRRLKNEV 638
+++PY LRR+K +V
Sbjct: 736 QLEPYILRRVKKDV 749
Score = 266 (98.7 bits), Expect = 2.3e-47, Sum P(5) = 2.3e-47
Identities = 59/136 (43%), Positives = 85/136 (62%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ GH VLIFSQ +ML+++ + + + + F R+DG+ K R + ++
Sbjct: 838 LVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDH 897
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQK V +
Sbjct: 898 FNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNI 957
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T +VEE+I +
Sbjct: 958 YRLVTARSVEEQIVER 973
Score = 96 (38.9 bits), Expect = 2.3e-47, Sum P(5) = 2.3e-47
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIV 679
L ++++PY LRR+K +V +L K E I+ + +TS Q+Q Y+ L N + +
Sbjct: 733 LHQQLEPYILRRVKKDV--------EKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDAL 784
Query: 680 LSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGM 716
GS L I LKK C+H L+ R +E L G+
Sbjct: 785 RKGKRGSTSTFLNIVIELKKCCNHAALI--RPSEFELMGL 822
Score = 50 (22.7 bits), Expect = 2.3e-47, Sum P(5) = 2.3e-47
Identities = 22/104 (21%), Positives = 43/104 (41%)
Query: 220 DEYEESKGDDVADEEQETENVGIGLKRNEPRWVDN-NLVSARESFESNL--DGEEDGGS- 275
D+ E+S D + + +++ G +RN+ ++N N S+ E N D E + G
Sbjct: 89 DDQEDSSSDGSSGSDSDSDAEGPSDQRNQS--INNANTSSSLPKPEQNEEEDNETEAGQQ 146
Query: 276 --LSEVEGDE------HLSRVHETKKHHQRQKKNEPKRVHDGER 311
S+ DE ++S + + ++ PKR +
Sbjct: 147 QPASDASADESSDSSANVSPTSSSSSSEEEEEDYRPKRTRQARK 190
Score = 48 (22.0 bits), Expect = 3.7e-47, Sum P(5) = 3.7e-47
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 258 SARESFES--NLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQ 315
SA ES +S N+ S E E D R + +K +K++ ++
Sbjct: 153 SADESSDSSANVSPTSSSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWD 212
Query: 316 SFVSGGREEYDDE 328
S S E+ DDE
Sbjct: 213 SDESDESEDSDDE 225
Score = 43 (20.2 bits), Expect = 2.2e-19, Sum P(4) = 2.2e-19
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 695 KKICDHPLLLTKR--AAEDVLD----GMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQH 748
K + DH L++ + VLD G S NP + + A+ KD+ QE
Sbjct: 977 KMVLDH-LVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELFKDE-QEHD 1034
Query: 749 DNISCKISFIL 759
D++ C I IL
Sbjct: 1035 DDLVCDIDEIL 1045
Score = 40 (19.1 bits), Expect = 4.4e-19, Sum P(4) = 4.4e-19
Identities = 23/83 (27%), Positives = 32/83 (38%)
Query: 697 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKIS 756
+CD +L R AE + D + +D A K+A A E D + D +
Sbjct: 1038 VCDIDEIL--RRAETRNE--DPEMPADDLLSAFKVASIAAFEEEPSDSVSKQDQNAAGEE 1093
Query: 757 FILSLLDKLIPEGHNVLIFSQTR 779
D +IPEG I Q R
Sbjct: 1094 DDSKDWDDIIPEGFRKAIDDQER 1116
Score = 39 (18.8 bits), Expect = 2.3e-47, Sum P(5) = 2.3e-47
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1017 PRDIK-LNKKSSSPKNEAKLKESDIKERIKRLSQ 1049
PR ++ L S NE K K +K+ +K L Q
Sbjct: 1496 PRALEVLGDLDPSIFNECKEKMRPVKKALKALDQ 1529
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 287 (106.1 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 406 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 465
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 466 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 525
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 526 VMIYRFVTRASVEERI 541
Score = 242 (90.2 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 80 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 139
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 140 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 199
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 200 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 259
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 260 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 304
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 305 DLLGPHMLRRLKADVF 320
Score = 109 (43.4 bits), Expect = 3.5e-47, Sum P(3) = 3.5e-47
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 301 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 352
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 353 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 388
Score = 58 (25.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 252 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 305
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 534 (193.0 bits), Expect = 4.0e-47, Sum P(2) = 4.0e-47
Identities = 154/548 (28%), Positives = 280/548 (51%)
Query: 358 LVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLF--PHQREGLRWLWSLHCQGK 415
L+N +D S+ + + +T +G P + L P+Q+ GL WL +H G
Sbjct: 456 LMNKCEDISN-KLTKQVTMLTGNGGGWNIEQPSLLNQSLSLKPYQKVGLNWLALVHKHGL 514
Query: 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREY 475
GIL D+MGLGKT+Q FLA LF L+V P + + +W++E+ + + Y
Sbjct: 515 NGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCY 574
Query: 476 FGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 533
+G+ + +Q + + +D V++TTY+ ++S S F + +Y I
Sbjct: 575 YGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDR--SLFRRLKL-------NYAIF 625
Query: 534 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKE 593
DEGH++KN + R + L+ I + +R++++GTP+QNNL EL +L NF P + +
Sbjct: 626 DEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIR 685
Query: 594 KYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFH----EDDVTSSAT 649
+ + D+ ++ ++RI A AK++ I+P+ LRR+K EV + D
Sbjct: 686 RMFSSKTKPADEQSIYEKERI--AHAKQI---IKPFILRRVKEEVLKLLPPKKDQIELCA 740
Query: 650 LSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAA 709
+S+K E + ++ + N+E+ +A +L + L + +
Sbjct: 741 MSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQ 800
Query: 710 EDVLDGMDSMLNP----EDAALAEKLAMHIA--DVAEKDDFQEQHDNI--SCKISFILSL 761
+ + NP ED + +H+ + +Q D I S K + +
Sbjct: 801 LMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHINSYQLDMDLILDSGKFRTLGCI 860
Query: 762 LDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ-EGDV 820
L +L +G V++FSQ ML++++ + +++LR+DG T+ S+R+ ++++F + D+
Sbjct: 861 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 920
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+FLL+++ GGLG+ LT A+ VI+ D NP D Q+ DR +R+GQ K+V+V +L++ G
Sbjct: 921 F-VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQG 979
Query: 881 TVEEKIYR 888
T+EE + +
Sbjct: 980 TIEESMLK 987
Score = 41 (19.5 bits), Expect = 4.0e-47, Sum P(2) = 4.0e-47
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 295 HQRQKKN--EPKR-VHDGERFNGQSFVSGGREEYDDEDDCVI--VSGKLVVNRPDRRDGK 349
++++KKN PK+ V D E +G S E+Y ++ + GK++ D G+
Sbjct: 339 NKKRKKNVFNPKKAVEDSEYDSGSDAGSSLDEDYSSCEEVMEDGYKGKILHFLQDASIGE 398
Query: 350 L 350
L
Sbjct: 399 L 399
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 287 (106.1 bits), Expect = 4.5e-47, Sum P(4) = 4.5e-47
Identities = 87/261 (33%), Positives = 133/261 (50%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGLFHS-RL 443
P +G N+ L +Q EGL WL C IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 462 PAYLGGENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQL 521
Query: 444 IKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVL 497
L+V P + L+ W +E + Y G + R+YE + + L
Sbjct: 522 YGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNAL 581
Query: 498 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 557
+TTY+I+ + K++ GS I+ W ++ +DE H +KN + K+L++ S H
Sbjct: 582 ITTYEILLKD-KTVLGS--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFKSNH 629
Query: 558 RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 617
R++I+GTP+QN+LKELW+L +F PE F E +E + H RE S
Sbjct: 630 RLLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS- 677
Query: 618 VAKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 678 ----LHKVLEPFLLRRVKKDV 694
Score = 283 (104.7 bits), Expect = 4.5e-47, Sum P(4) = 4.5e-47
Identities = 61/139 (43%), Positives = 88/139 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K R +
Sbjct: 779 SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 838
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK
Sbjct: 839 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 898
Query: 871 VVVYRLMTCGTVEEKIYRK 889
V +YRL+T GTVEE+I +
Sbjct: 899 VNIYRLVTKGTVEEEIIER 917
Score = 81 (33.6 bits), Expect = 4.5e-47, Sum P(4) = 4.5e-47
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 676 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYK 727
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLN 721
+ GS L I LKK C+H L+ + +G + +L+
Sbjct: 728 ALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 774
Score = 43 (20.2 bits), Expect = 4.5e-47, Sum P(4) = 4.5e-47
Identities = 19/102 (18%), Positives = 44/102 (43%)
Query: 216 ESVADEYEESKGDDVADEEQETENVG------IGLKRNEPRWVDNNLVSARESFESNLDG 269
E+ +D+ E G+ V +++ +E + +G K + A + D
Sbjct: 243 ETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPSGDFDS 302
Query: 270 EEDGGSLSEV---EGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
E+D G + + +G ++ E+++ Q+QK K++ +
Sbjct: 303 EKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLEN 344
Score = 42 (19.8 bits), Expect = 5.7e-47, Sum P(4) = 5.7e-47
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 277 SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGG-REEYDDEDD 330
SE E ++ S E ++ + ++ P+R R Q G R++ D DD
Sbjct: 160 SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDD 214
Score = 37 (18.1 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 504 VRNNSKSLRGSSFISDEAGDDD 525
V+ K+ RG D + DDD
Sbjct: 195 VKKQPKTQRGKRKKQDSSDDDD 216
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 334 (122.6 bits), Expect = 4.7e-47, Sum P(5) = 4.7e-47
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 702 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 761
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 762 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 815
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 816 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 869
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 870 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 927
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 928 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 977
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 978 KKGKGGAKTLMNTIMQLRKICNHPYM 1003
Score = 285 (105.4 bits), Expect = 4.7e-47, Sum P(5) = 4.7e-47
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1036 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1095
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1096 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1155
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1156 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1206
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1207 EENEEEDEVPDDETLNQMI 1225
Score = 44 (20.5 bits), Expect = 1.5e-22, Sum P(5) = 1.5e-22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1268 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1319
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE+ +G +S L P+ + E M
Sbjct: 545 KKKAEENAEGGESALGPDGEPIDESSQM 572
Score = 40 (19.1 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 643 LLDPNSEEVSEKDAKQIIETAKQD 666
Score = 39 (18.8 bits), Expect = 4.7e-47, Sum P(5) = 4.7e-47
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK +++ K K+ + + K
Sbjct: 1503 IKLNKKDEKGRDKGKGKKRPNRGKAK 1528
Score = 38 (18.4 bits), Expect = 4.7e-47, Sum P(5) = 4.7e-47
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 407 EARMTEKLEKQQKIEQERKRR 427
Score = 38 (18.4 bits), Expect = 4.7e-47, Sum P(5) = 4.7e-47
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE 310
+E +L+ + + ++ + KK +R+KK + GE
Sbjct: 516 DEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENAEGGE 556
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 334 (122.6 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 817
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 818 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 929
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 930 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 979
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYM 1005
Score = 285 (105.4 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1038 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1097
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1098 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1158 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1208
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1209 EENEEEDEVPDDETLNQMI 1227
Score = 44 (20.5 bits), Expect = 1.5e-22, Sum P(5) = 1.5e-22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1270 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1321
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE+ +G +S L P+ + E M
Sbjct: 547 KKKAEENAEGGESALGPDGEPIDESSQM 574
Score = 40 (19.1 bits), Expect = 6.4e-17, Sum P(5) = 6.4e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 645 LLDPNSEEVSEKDAKQIIETAKQD 668
Score = 39 (18.8 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK +++ K K+ + + K
Sbjct: 1505 IKLNKKDEKGRDKGKGKKRPNRGKAK 1530
Score = 38 (18.4 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 408 EARMTEKLEKQQKIEQERKRR 428
Score = 38 (18.4 bits), Expect = 4.8e-47, Sum P(5) = 4.8e-47
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE 310
+E +L+ + + ++ + KK +R+KK + GE
Sbjct: 518 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGE 558
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 285 (105.4 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 60/137 (43%), Positives = 88/137 (64%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL GH VLIFSQ KML+L+++ + ++GYK+ RIDG R +
Sbjct: 1033 SGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEA 1092
Query: 812 VNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F AP +FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQ K
Sbjct: 1093 IDRFNAPG-APQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNK 1151
Query: 870 DVVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1152 KVMIYRFVTKASVEERI 1168
Score = 245 (91.3 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 85/268 (31%), Positives = 134/268 (50%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 707 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 766
Query: 452 PKTLLSHWIKE----------LTAVG---LSAKIRE----YFGTCVK--TRQYELQYVLQ 492
P + + +W +E +T VG A IRE + ++ + +++
Sbjct: 767 PLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEAS 826
Query: 493 DK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551
K VLLT+Y+++ ++ L G D W +++DE H +KN ++ + L
Sbjct: 827 VKFHVLLTSYELITIDTAVL----------GSID--WACLVVDEAHRLKNNQSKFFRILN 874
Query: 552 EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDRE 611
P H+++++GTP+QNNL+EL+ L NF PE + + F E++ D + +E
Sbjct: 875 NYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSNLEGFLEEFA-------D---IAKE 924
Query: 612 KRIGSAVAKELRERIQPYFLRRLKNEVF 639
+I K+L + + P+ LRRLK +VF
Sbjct: 925 DQI-----KKLHDMLGPHMLRRLKADVF 947
Score = 106 (42.4 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 928 KKLHDMLGPHMLRRLKADVFKH--------MPSKTELIVRVELSPMQKKYYKFILTRNFE 979
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 980 ALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAME 1015
Score = 69 (29.3 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 30/118 (25%), Positives = 50/118 (42%)
Query: 216 ESVADEYEESKGDDVADEEQ--ETENVGIGLKRNEPRWVDNNLVSARESFESNLD-GEED 272
+ + +E E+ V +++ ++ G KRN R + + S +LD GEED
Sbjct: 21 DDLEEELSENDAPKVKKKKKAKKSSRESKGSKRNRSRREEIGISSPEPGEGPDLDDGEED 80
Query: 273 GGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
SE EG ++ KK K++ + ER + S EE D++DD
Sbjct: 81 R---SESEGSDYTPG--RKKKKRASTAKDKKRNSSAAERNSAASKRREPEEEEDEDDD 133
Score = 50 (22.7 bits), Expect = 2.5e-45, Sum P(6) = 2.5e-45
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 258 SARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
S+ E + ++D + D GS++ V S ++ +++ K + K+ DG+ +
Sbjct: 295 SSSEEDDVDVDSDFDDGSINSVSVSNG-SNSRSSRSSAKKKPKKKTKKDEDGDGY 348
Score = 48 (22.0 bits), Expect = 9.2e-46, Sum P(4) = 9.2e-46
Identities = 18/84 (21%), Positives = 34/84 (40%)
Query: 274 GSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVI 333
GS + + EH S + E + +N+ +V ++ S S G + + +
Sbjct: 3 GSEDDRDDFEHRSVMQEEDDLEEELSENDAPKVKKKKKAKKSSRESKGSKRNRSRREEIG 62
Query: 334 VSGKLVVNRPDRRDGKLNKSAHSG 357
+S PD DG+ ++S G
Sbjct: 63 ISSPEPGEGPDLDDGEEDRSESEG 86
Score = 47 (21.6 bits), Expect = 5.0e-45, Sum P(6) = 5.0e-45
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEH 284
E+ E +GEED + E E D+H
Sbjct: 405 EAREDASEGEEDNEAGGEAEEDDH 428
Score = 45 (20.9 bits), Expect = 2.5e-45, Sum P(6) = 2.5e-45
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 56 SSRDVDNTENRAVVDDEPNFSD-ITDFDSPLQSKTVSA 92
S D D+ E+R+V+ +E + + +++ D+P K A
Sbjct: 4 SEDDRDDFEHRSVMQEEDDLEEELSENDAPKVKKKKKA 41
Score = 39 (18.8 bits), Expect = 2.5e-45, Sum P(6) = 2.5e-45
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 130 KGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDD 165
K + +D + SA + KRR P+ + EDD
Sbjct: 97 KRASTAKDKKRNSSAAERNSAASKRREPEEEEDEDD 132
Score = 38 (18.4 bits), Expect = 4.9e-47, Sum P(5) = 4.9e-47
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 26 DHDHVESRSVIDEE 39
D D E RSV+ EE
Sbjct: 7 DRDDFEHRSVMQEE 20
Score = 37 (18.1 bits), Expect = 4.1e-44, Sum P(6) = 4.1e-44
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDD 71
P K+K+ G K SS + D+ + + DD
Sbjct: 280 PLKIKLGGFNSKRKRSSSEEDDVDVDSDFDD 310
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 334 (122.6 bits), Expect = 5.5e-47, Sum P(5) = 5.5e-47
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 780 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 833
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 834 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 888 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 945
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 946 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 995
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPYM 1021
Score = 285 (105.4 bits), Expect = 5.5e-47, Sum P(5) = 5.5e-47
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1054 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1113
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1114 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1173
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1174 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1224
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1225 EENEEEDEVPDDETLNQMI 1243
Score = 44 (20.5 bits), Expect = 1.7e-22, Sum P(5) = 1.7e-22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1286 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1337
Score = 40 (19.1 bits), Expect = 2.8e-17, Sum P(4) = 2.8e-17
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAM 733
K+ AE+ +G +S L P+ + E M
Sbjct: 563 KKKAEENAEGGESALGPDGEPIDESSQM 590
Score = 40 (19.1 bits), Expect = 7.4e-17, Sum P(5) = 7.4e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 661 LLDPNSEEVSEKDAKQIIETAKQD 684
Score = 39 (18.8 bits), Expect = 5.5e-47, Sum P(5) = 5.5e-47
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK +++ K K+ + + K
Sbjct: 1539 IKLNKKDDKGRDKGKGKKRPNRGKAK 1564
Score = 38 (18.4 bits), Expect = 5.5e-47, Sum P(5) = 5.5e-47
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 425 EARMTEKLEKQQKIEQERKRR 445
Score = 38 (18.4 bits), Expect = 5.5e-47, Sum P(5) = 5.5e-47
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE 310
+E +L+ + + ++ + KK +R+KK + GE
Sbjct: 534 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGE 574
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 296 (109.3 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 68/173 (39%), Positives = 106/173 (61%)
Query: 759 LSLLDKLIP----EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
+++LDKL+P +G VLIFSQ +ML+++++ + Y + R+DG T DR + + +
Sbjct: 433 MAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQE 492
Query: 815 FQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F + A +F+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK V V
Sbjct: 493 FNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRV 552
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQ-DLRELLSLPKQG 925
+RL+T TVEEKI + K L K + + S Q + E+L++ + G
Sbjct: 553 FRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFG 605
Score = 289 (106.8 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 83/252 (32%), Positives = 128/252 (50%)
Query: 391 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALV 449
K G M +Q GL W+ SL+ G GIL D+MGLGKT+Q L L H + +V
Sbjct: 124 KSGEMR-DYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIV 182
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ--DKGVLLTTYDI-VRN 506
+ PK+ L +W+ E S + G TR ++ VL + V +T+Y++ +R
Sbjct: 183 IVPKSTLQNWVNEFKKWCPSLRAVCLIGD-QDTRNTFIRDVLMPGEWDVCVTSYEMCIRE 241
Query: 507 NSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 566
S + + W Y+++DE H IKN ++ ++ L E +A+R++I+GTP+
Sbjct: 242 KSVFKKFN-------------WRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPL 288
Query: 567 QNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 626
QNNL ELWAL NF P++ ++ F E + G+D A+ L +
Sbjct: 289 QNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDD------------ALITRLHAVL 336
Query: 627 QPYFLRRLKNEV 638
+P+ LRRLK EV
Sbjct: 337 KPFLLRRLKAEV 348
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 307 (113.1 bits), Expect = 7.3e-47, Sum P(5) = 7.3e-47
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 445 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 503
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 504 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 563
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 564 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 611
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 612 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 666
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 667 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 696
Score = 245 (91.3 bits), Expect = 7.3e-47, Sum P(5) = 7.3e-47
Identities = 56/136 (41%), Positives = 82/136 (60%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 784 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 843
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+R G V +
Sbjct: 844 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNI 903
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 904 YRLVTKGSVEEDILER 919
Score = 81 (33.6 bits), Expect = 7.3e-47, Sum P(5) = 7.3e-47
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 667 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 713
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 714 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 759
Score = 61 (26.5 bits), Expect = 7.3e-47, Sum P(5) = 7.3e-47
Identities = 25/110 (22%), Positives = 45/110 (40%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEEDGGSLSEV 279
E + S +D D E + K + W + S +S +S + E + S E
Sbjct: 119 EEDSSSSEDSDDSSSEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDET 174
Query: 280 EGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
E D ++++K R K K++ G++ + + EE +DED
Sbjct: 175 ESDYEPK--NKSRKPQNRSKSKNGKKII-GQK---KRQIDSSEEEEEDED 218
Score = 50 (22.7 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 412 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 470
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 471 EGLELRDYQLNGLN 484
Score = 45 (20.9 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E E + C D++ +++S KPQ + K + +++ R +D++E +
Sbjct: 163 EEEREKSSCDETESDYEP-KNKS----RKPQNRSKSKNGKKIIGQKKRQIDSSEEEE--E 215
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 216 DE-------DYDNDKRSSRRQATVNV 234
Score = 44 (20.5 bits), Expect = 7.3e-47, Sum P(5) = 7.3e-47
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKER 1043
N R++K K K + +KE D KE+
Sbjct: 1409 NKRELKREIKEKEDKKD--IKEKDFKEK 1434
Score = 44 (20.5 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES D D+ G G D S+ +S S+ D + GS
Sbjct: 8 ESVRNSSGESSQSD--DDSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSDSGSESGS 60
Query: 276 LSEVEGD 282
SE E D
Sbjct: 61 QSESESD 67
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1024 KKSSSPKNEAKLKES--DIKERIK 1045
KK K EAK KE+ ++K IK
Sbjct: 1395 KKEPEEKREAKEKENKRELKREIK 1418
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1018 RDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKA 1055
+DIK +K K E K+KE+ KE+ + +L +K+
Sbjct: 1424 KDIK--EKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1459
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(5) = 3.0e-46
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1636 QYHDHHKDRHQGD 1648
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(5) = 3.0e-46
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNK 1054
K +KK K+ + +E+ +KE I++ + K
Sbjct: 1420 KEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK 1453
Score = 37 (18.1 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 409 GLPYSECSWEDGALISKK--FQACID 432
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 307 (113.1 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 445 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 503
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 504 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 563
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 564 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 611
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 612 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 666
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 667 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 696
Score = 245 (91.3 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 56/136 (41%), Positives = 82/136 (60%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 784 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 843
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+R G V +
Sbjct: 844 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNI 903
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 904 YRLVTKGSVEEDILER 919
Score = 81 (33.6 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 667 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 713
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 714 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 759
Score = 61 (26.5 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 25/110 (22%), Positives = 45/110 (40%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEEDGGSLSEV 279
E + S +D D E + K + W + S +S +S + E + S E
Sbjct: 119 EEDSSSSEDSDDSSSEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDET 174
Query: 280 EGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
E D ++++K R K K++ G++ + + EE +DED
Sbjct: 175 ESDYEPK--NKSRKPQNRSKSKNGKKII-GQK---KRQIDSSEEEEEDED 218
Score = 50 (22.7 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 412 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 470
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 471 EGLELRDYQLNGLN 484
Score = 45 (20.9 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E E + C D++ +++S KPQ + K + +++ R +D++E +
Sbjct: 163 EEEREKSSCDETESDYEP-KNKS----RKPQNRSKSKNGKKIIGQKKRQIDSSEEEE--E 215
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 216 DE-------DYDNDKRSSRRQATVNV 234
Score = 44 (20.5 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKER 1043
N R++K K K + +KE D KE+
Sbjct: 1413 NKRELKREIKEKEDKKD--IKEKDFKEK 1438
Score = 44 (20.5 bits), Expect = 4.1e-45, Sum P(5) = 4.1e-45
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 216 ESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
ESV + ES D D+ G G D S+ +S S+ D + GS
Sbjct: 8 ESVRNSSGESSQSD--DDSGSASGSGSGSSSGSSS--DG---SSSQSGSSDSDSGSESGS 60
Query: 276 LSEVEGD 282
SE E D
Sbjct: 61 QSESESD 67
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1024 KKSSSPKNEAKLKES--DIKERIK 1045
KK K EAK KE+ ++K IK
Sbjct: 1399 KKEPEEKREAKEKENKRELKREIK 1422
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1018 RDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKA 1055
+DIK +K K E K+KE+ KE+ + +L +K+
Sbjct: 1428 KDIK--EKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1463
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(5) = 3.0e-46
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1640 QYHDHHKDRHQGD 1652
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(5) = 3.0e-46
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNK 1054
K +KK K+ + +E+ +KE I++ + K
Sbjct: 1424 KEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK 1457
Score = 37 (18.1 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 409 GLPYSECSWEDGALISKK--FQACID 432
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 307 (113.1 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 446 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 504
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 505 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 564
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 565 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 612
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 613 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 667
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 668 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 697
Score = 245 (91.3 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 56/136 (41%), Positives = 82/136 (60%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ K R + ++
Sbjct: 785 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDH 844
Query: 815 FQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+R G V +
Sbjct: 845 FNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNI 904
Query: 874 YRLMTCGTVEEKIYRK 889
YRL+T G+VEE I +
Sbjct: 905 YRLVTKGSVEEDILER 920
Score = 81 (33.6 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 668 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 714
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 715 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 760
Score = 61 (26.5 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 25/110 (22%), Positives = 45/110 (40%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARES-FESNLDGEEDGGSLSEV 279
E + S +D D E + K + W + S +S +S + E + S E
Sbjct: 120 EEDSSSSEDSDDSSSEVKRK----KHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDET 175
Query: 280 EGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
E D ++++K R K K++ G++ + + EE +DED
Sbjct: 176 ESDYEPK--NKSRKPQNRSKSKNGKKII-GQK---KRQIDSSEEEEEDED 219
Score = 50 (22.7 bits), Expect = 1.2e-18, Sum P(4) = 1.2e-18
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK A ++ SR P F D V P+ + + +Y GG+
Sbjct: 413 YSECSWEDGALISKKFQACIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 471
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 472 EGLELRDYQLNGLN 485
Score = 48 (22.0 bits), Expect = 1.6e-45, Sum P(5) = 1.6e-45
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 212 GGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEE 271
GG+ E+ + K +D++ + + G G + D S+ +S S+ D
Sbjct: 2 GGISENYSGRISGGKDCSQSDDDSGSAS-GSGSGSSSGSSSDG---SSSQSGSSDSDSGS 57
Query: 272 DGGSLSEVEGD 282
+ GS SE E D
Sbjct: 58 ESGSQSESESD 68
Score = 45 (20.9 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 20/86 (23%), Positives = 39/86 (45%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E E + C D++ +++S KPQ + K + +++ R +D++E +
Sbjct: 164 EEEREKSSCDETESDYEP-KNKS----RKPQNRSKSKNGKKIIGQKKRQIDSSEEEE--E 216
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 217 DE-------DYDNDKRSSRRQATVNV 235
Score = 44 (20.5 bits), Expect = 7.4e-47, Sum P(5) = 7.4e-47
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1016 NPRDIKLNKKSSSPKNEAKLKESDIKER 1043
N R++K K K + +KE D KE+
Sbjct: 1414 NKRELKREIKEKEDKKD--IKEKDFKEK 1439
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1024 KKSSSPKNEAKLKES--DIKERIK 1045
KK K EAK KE+ ++K IK
Sbjct: 1400 KKEPEEKREAKEKENKRELKREIK 1423
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1018 RDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKA 1055
+DIK +K K E K+KE+ KE+ + +L +K+
Sbjct: 1429 KDIK--EKDFKEKRENKVKEAIQKEKDIKEEKLNESKS 1464
Score = 40 (19.1 bits), Expect = 1.1e-44, Sum P(5) = 1.1e-44
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 310 ERFNGQSFVSGGREEYDDEDDCVIVSG 336
E ++G+ +SGG++ +DD SG
Sbjct: 6 ENYSGR--ISGGKDCSQSDDDSGSASG 30
Score = 38 (18.4 bits), Expect = 3.1e-46, Sum P(5) = 3.1e-46
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 934 QLHEEHGDQHNMD 946
Q H+ H D+H D
Sbjct: 1641 QYHDHHKDRHQGD 1653
Score = 38 (18.4 bits), Expect = 3.1e-46, Sum P(5) = 3.1e-46
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKRLSQLISNK 1054
K +KK K+ + +E+ +KE I++ + K
Sbjct: 1425 KEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK 1458
Score = 37 (18.1 bits), Expect = 1.3e-44, Sum P(6) = 1.3e-44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 410 GLPYSECSWEDGALISKK--FQACID 433
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 334 (122.6 bits), Expect = 8.4e-47, Sum P(5) = 8.4e-47
Identities = 103/326 (31%), Positives = 154/326 (47%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 785 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 838
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 839 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 893 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 950
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 951 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1000
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPYM 1026
Score = 285 (105.4 bits), Expect = 8.4e-47, Sum P(5) = 8.4e-47
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1059 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1118
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1119 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1178
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1179 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1229
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1230 EENEEEDEVPDDETLNQMI 1248
Score = 44 (20.5 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1291 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1342
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(5) = 1.1e-16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 666 LLDPNSEEVSEKDAKQIIETAKQD 689
Score = 38 (18.4 bits), Expect = 8.4e-47, Sum P(5) = 8.4e-47
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 430 EARMTEKLEKQQKIEQERKRR 450
Score = 38 (18.4 bits), Expect = 8.4e-47, Sum P(5) = 8.4e-47
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE 310
+E +L+ + + ++ + KK +R+KK + GE
Sbjct: 539 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGE 579
Score = 37 (18.1 bits), Expect = 8.4e-47, Sum P(5) = 8.4e-47
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK ++ K K+ + + K
Sbjct: 1526 IKLNKKEEKGRDTGKGKKRPNRGKAK 1551
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 284 (105.0 bits), Expect = 8.8e-47, Sum P(5) = 8.8e-47
Identities = 60/137 (43%), Positives = 87/137 (63%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL +L G+ VLIFSQ +ML+++ + + K Y+F R+DG+ K R + ++
Sbjct: 797 KLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALD 856
Query: 814 DFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 872
F EG FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V
Sbjct: 857 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 916
Query: 873 VYRLMTCGTVEEKIYRK 889
+YRL+T GTVEE I +
Sbjct: 917 IYRLVTKGTVEEDIIER 933
Score = 282 (104.3 bits), Expect = 8.8e-47, Sum P(5) = 8.8e-47
Identities = 89/261 (34%), Positives = 135/261 (51%)
Query: 389 PGKIG--NM-LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
P IG N+ L +Q +G+ WL C+ IL D+MGLGKT+Q FL+ LFH +L
Sbjct: 479 PSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLY 538
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFG--TCVKT-RQYELQYVLQDKGV----L 497
+VV P + L+ W +E + Y G T KT R YE Q K + L
Sbjct: 539 GPFIVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINP-QTKRIKFNAL 597
Query: 498 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 557
LTTY+I+ + K + G+ I+ W ++ +DE H +KN + K+L++ S H
Sbjct: 598 LTTYEILLKD-KGVLGN--IN---------WAFLGVDEAHRLKNDDSLLYKTLIDFRSNH 645
Query: 558 RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 617
R++I+GTP+QN+LKELW+L +F + W E +E D+H R+ S
Sbjct: 646 RLLITGTPLQNSLKELWSLLHFLMSDKF--ESW--EDFE-------DEHGKGRDNGYQS- 693
Query: 618 VAKELRERIQPYFLRRLKNEV 638
L + ++P+ LRR+K +V
Sbjct: 694 ----LHKVLEPFLLRRVKKDV 710
Score = 76 (31.8 bits), Expect = 8.8e-47, Sum P(5) = 8.8e-47
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
+ L + ++P+ LRR+K +V +L K E I+ + +++ Q+Q Y+ L N +
Sbjct: 692 QSLHKVLEPFLLRRVKKDV--------EKSLPAKVEQILRVDMSAQQKQFYKWILTRNFK 743
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ GS L I LKK C+H L+
Sbjct: 744 ALSKGTRGSSSGFLNIVMELKKCCNHAFLI 773
Score = 59 (25.8 bits), Expect = 8.8e-47, Sum P(5) = 8.8e-47
Identities = 29/121 (23%), Positives = 46/121 (38%)
Query: 210 NVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDG 269
+V GV S E ++ + A+ ++E G KR R + D
Sbjct: 106 DVYGVRRSSRSRQEPARLNIGAEGSSDSE--GESSKRKSSRQKKKENTWKDDDSNDEEDV 163
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDED 329
EE+ S SE E +E R + K + K+ G + Q S ++ DD+D
Sbjct: 164 EEETSS-SESEQEEKKVRSRRLPARRPQTKSSASKQSQKGRKQRKQE--SSDEDDDDDDD 220
Query: 330 D 330
D
Sbjct: 221 D 221
Score = 52 (23.4 bits), Expect = 4.6e-46, Sum P(5) = 4.6e-46
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHL-SRVHETKKHHQRQKKNEP 303
K+ + +N S S ESN G E G +G E SR E+ + +E
Sbjct: 8 KQEDEGSTQSNASSNSASEESNRSGSESGSQSESEQGSEKAQSRHSESNSTSDSESHSES 67
Query: 304 KRVHDGERFNGQS 316
+G + + S
Sbjct: 68 GSESNGSKSHQSS 80
Score = 38 (18.4 bits), Expect = 8.8e-47, Sum P(5) = 8.8e-47
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1018 RDIKLNK-KSSSPKNEAKLKESDI-KERIK 1045
+D K NK K+ +PK E KE D K+R K
Sbjct: 1393 KDNKENKEKTGTPKKE---KEGDKDKKRSK 1419
Score = 37 (18.1 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 37 DEEKPQKVKIEGRRRLC-KVSSRDVDN---TENRAVVDDEPNFSDITDFDSPLQSKTV 90
D+++ K + RRR KVS ++ N T++ +++ + D DS K V
Sbjct: 219 DDDEEDTPKRQTRRRAATKVSYKEDQNDFETDSDDLIEMAEGAEEQQDDDSETIEKVV 276
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 314 (115.6 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 89/323 (27%), Positives = 157/323 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q GL WL SL+ + GIL D+MGLGKT+Q F++ L+ ++ LVVA
Sbjct: 621 GGKLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVA 680
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL 511
P + +S+W+ E + Y G + R+ V++T+++ + + K+L
Sbjct: 681 PLSTISNWVSEFARWSPKLHVIVYKGKQDERRETARTIPRNAFCVVITSFEYIIKDRKTL 740
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
G W Y+I+DEGH IKN +++ + L + S +R++++GTP+QN+L
Sbjct: 741 -GRVH-----------WIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLG 788
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELWAL NF P + F+ + P + K+ ++ + + L + ++ + L
Sbjct: 789 ELWALLNFLLPTIFNSADTFQNWFNAPF-QAKGKNLINVNEEESLIIINRLHQVLRFFLL 847
Query: 632 RRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LA 689
RRLK++V + L K E ++ +++ Q +Y + + ++ D
Sbjct: 848 RRLKSDV--------ESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSG 899
Query: 690 ALTI---------LKKICDHPLL 703
L + L+KIC+HP L
Sbjct: 900 RLKMKGFNNIVKQLQKICNHPYL 922
Score = 283 (104.7 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 66/179 (36%), Positives = 104/179 (58%)
Query: 741 KDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR 798
KD++ D I S K + +L K+ H VLIF+Q +++NL++E K + FLR
Sbjct: 924 KDEWDINEDLIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLR 983
Query: 799 IDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
+DG+TK +R +V ++ D +P IF+L++ GGLG+ L AD VI+ D WNP D
Sbjct: 984 LDGSTKPEERAHLVVEWNRPD-SPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDL 1042
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQ 906
Q+ DR +RIGQ V V+RL++ ++EEKI + +I + G+F T + +E+
Sbjct: 1043 QAQDRCHRIGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKIIQAGMFNTHSNDQER 1101
Score = 48 (22.0 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 60 VDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDI---TVFDS 116
+D N DD N + P K V+ + ++S + D P F+ I T
Sbjct: 3 IDRVNNE---DDSLN-NIYNPSKDPNYIKLVNVLTELKSNGISDSDPTFTSILQITKLYL 58
Query: 117 PPKAKT-VSEN--DNYKGGNEIRD--ILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVK 171
K + ++ N +N G N + I+ A++E R +P V S +++
Sbjct: 59 MNKTNSGINNNGVNNNNGNNNSNNDNIVELFKAQVESYKYISRNLPIPVGVLQKMSPILE 118
Query: 172 N 172
N
Sbjct: 119 N 119
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 932 QQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHS 968
++Q HE + D N D+ ++ + T GI S+++
Sbjct: 1335 EKQNHENNSDNENQDDIIQ--VDDHPTNGIENSSNNN 1369
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 275 (101.9 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 64/162 (39%), Positives = 93/162 (57%)
Query: 736 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK 795
+ + +KD ++ S K+ I LL KL H VLIFSQ +L+++ + + +GY
Sbjct: 816 SSIKDKDQIFQKLIQASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYP 875
Query: 796 FLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
RIDG+ K +DR ++ F + D +FLL ++ GG+G+ LT AD VI+ D WNP
Sbjct: 876 HERIDGSIKGNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQN 935
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 896
D Q+ R +RIGQ K V VYRL+T T E ++ K K GL
Sbjct: 936 DLQAQARCHRIGQDKMVKVYRLVTKNTYERLMFDKASKKLGL 977
Score = 257 (95.5 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 82/255 (32%), Positives = 120/255 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
GN L P+Q EGL WL + + ILGD+MGLGKT+Q L L I+ LVVA
Sbjct: 506 GNKLRPYQLEGLNWLSFCWHEQRNSILGDEMGLGKTVQSVSILETLRKVHGIRGPFLVVA 565
Query: 452 PKTLLSHWIKELTA-VGLSAKIREYFGTCVKT-RQYELQYVLQDK----GVLL--TTYDI 503
P T + HW +E ++A + G R YE + L+DK G + I
Sbjct: 566 PLTTIPHWKREFENWTDMNALVYHDSGAGRPICRNYE--FYLKDKDGGGGGASGGASGKI 623
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
+ N I+D W Y+++DE H +KN S + L H ++++G
Sbjct: 624 TKFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTG 683
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNN +ELW+L NF P+ + F +Y G+ K S+ + L+
Sbjct: 684 TPLQNNTQELWSLLNFLDPKQFSNLDQFLLEY------GDLKE---------SSQVESLQ 728
Query: 624 ERIQPYFLRRLKNEV 638
++PY LRR+K V
Sbjct: 729 AILKPYLLRRMKERV 743
Score = 85 (35.0 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 215 VESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG 274
V+S ++E EES+ + DEE+E E G +N+ + N V + N + EEDG
Sbjct: 227 VQSESEESEESESESEEDEEEEEEK---GANKNKKKNEKENQVKGEGEDDDN-EKEEDGE 282
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHD 308
+ + E D+ + + + + +K+ +++ D
Sbjct: 283 NNTIDESDDEIDKFKQMDPIERIKKEYSIEKILD 316
Score = 84 (34.6 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 29/97 (29%), Positives = 45/97 (46%)
Query: 616 SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN 675
S+ + L+ ++PY LRR+K V +++ K E IV + LT+ Q++ Y A
Sbjct: 721 SSQVESLQAILKPYLLRRMKERV--------EKSIAPKEETIVEVELTTVQKKYYRAIYE 772
Query: 676 SEIVLSAFDG------SPLAALTILKKICDHPLLLTK 706
G S L + L+K C+HP L TK
Sbjct: 773 KNFSFLRKGGKSNQGPSLLNIMMELRKCCNHPYL-TK 808
Score = 65 (27.9 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 33/150 (22%), Positives = 69/150 (46%)
Query: 25 RDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENR--AVVDDEPNFSDITDFD 82
+D ++ S S I+ + + + + RL + ++++N +N V +P++ + T+ +
Sbjct: 363 KDLSYIHS-SWINSKLMNQTR-SSKMRLQRFIQKNIENEDNSDLLVSSTQPSWEEFTEVE 420
Query: 83 SPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDI--LN 140
L +TVS N + +A K+ I+ T D++K +I LN
Sbjct: 421 KVLDVRTVSVTSN-KFKADKQYLIKWKSISY-----SLSTWEYQDDFKDDLKIEQYYKLN 474
Query: 141 DLSARLEILSIDKRRVPKT----VDPEDDF 166
++ ++ E+ DK R P+T +D D+
Sbjct: 475 EMPSKEELR--DKPRPPRTAWKKIDQSPDY 502
Score = 62 (26.9 bits), Expect = 1.2e-44, Sum P(6) = 1.2e-44
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 248 EPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPK-RV 306
+P+ + +A ++N+ E + SE E +E E K ++ +KKNE + +V
Sbjct: 208 KPKGSVSKKAAALAKKKNNVQSESEESEESESESEED-EEEEEEKGANKNKKKNEKENQV 266
Query: 307 H-DGERFNGQSFVSGGREEYDDEDD 330
+GE + + G D+ DD
Sbjct: 267 KGEGEDDDNEKEEDGENNTIDESDD 291
Score = 59 (25.8 bits), Expect = 6.9e-44, Sum P(5) = 6.9e-44
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 259 ARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNE 302
++ S +SNL GE+ ++VE DE+ + E K + +++ E
Sbjct: 70 SKNSKKSNLSGEDSENDDNDVEKDENENNDVEMKDEEEEEEEEE 113
Score = 50 (22.7 bits), Expect = 5.8e-43, Sum P(5) = 5.8e-43
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEE 271
E+S+ DD E+ E EN + +K E + + E + + D ++
Sbjct: 81 EDSENDDNDVEKDENENNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDD 129
Score = 49 (22.3 bits), Expect = 1.2e-44, Sum P(6) = 1.2e-44
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 206 VTKD-NVGGVVESVADEYEESKGDDVADEEQETEN 239
V KD N VE +E EE + +++ +EE+E ++
Sbjct: 90 VEKDENENNDVEMKDEEEEEEEEEELEEEEEEDDS 124
Score = 45 (20.9 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 27/133 (20%), Positives = 50/133 (37%)
Query: 22 VLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDF 81
+L ++D + +K K K + L S D +N +N D+ N +D+
Sbjct: 48 ILENNNDSDSDNNNNKNKKSTKSKNSKKSNL---SGEDSENDDNDVEKDENEN-NDVEMK 103
Query: 82 DSPLQSKTVSAMVNIESRAVIDDGPKFSD-------ITVFDSPP----KAKTVSENDNYK 130
D + + + E +D S +V PP K+K +++ +N K
Sbjct: 104 DEEEEEEEEEELEEEEEEDDSEDSDDLSKKSRGRPKASVSKPPPPKVPKSKPIAKTNNKK 163
Query: 131 GGNEIRDILNDLS 143
N I+ + S
Sbjct: 164 NSNTKEVIIKEKS 176
Score = 43 (20.2 bits), Expect = 1.4e-46, Sum P(6) = 1.4e-46
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 993 AFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNE 1032
+F+GNSS SY N + N + N +S+ N+
Sbjct: 2283 SFMGNSSISYQSNNNNNNTNSFNNFNNNNNNNNNSNNSND 2322
Score = 42 (19.8 bits), Expect = 3.8e-42, Sum P(5) = 3.8e-42
Identities = 25/121 (20%), Positives = 50/121 (41%)
Query: 16 RTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSR---DVDNTENRAVVDDE 72
+ N+ S + + ES S DEE+ ++ ++ + ++ + ++ +N D E
Sbjct: 223 KKNNVQSESEESEESESESEEDEEEEEEKGANKNKKKNEKENQVKGEGEDDDNEKEEDGE 282
Query: 73 PNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGG 132
N D +D D + K + + I+ I+ K D + P K + N+N
Sbjct: 283 NNTIDESD-DEIDKFKQMDPIERIKKEYSIE---KILDKR-YIKPNKDDNNNNNNNNNNN 337
Query: 133 N 133
N
Sbjct: 338 N 338
Score = 39 (18.8 bits), Expect = 3.7e-46, Sum P(6) = 3.7e-46
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 1021 KLNKKSSSPKNEAKLKESDIKERIKR 1046
KL K+S + K + + KE +E++K+
Sbjct: 1519 KLEKESKNEKKKIE-KEKKQEEKLKK 1543
Score = 37 (18.1 bits), Expect = 9.4e-46, Sum P(6) = 9.4e-46
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 5 DKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTE 64
+ K + E ND + + +D + + DEE+ ++ + E + S D D+
Sbjct: 72 NSKKSNLSGEDSENDDNDVEKDENENNDVEMKDEEEEEEEEEELEEEEEEDDSEDSDDLS 131
Query: 65 NRA 67
++
Sbjct: 132 KKS 134
Score = 37 (18.1 bits), Expect = 2.1e-43, Sum P(6) = 2.1e-43
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 205 GVTKDNVGGVVESVADEYEESKGDDVADEEQETENV 240
G +N VE +E + + D +EE+E E +
Sbjct: 80 GEDSENDDNDVEKDENENNDVEMKDEEEEEEEEEEL 115
Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 603 NDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN 654
ND + +++++ + V E+++ + E EDD S LSKK+
Sbjct: 85 NDDNDVEKDENENNDV--EMKDEEEEEEEEEELEEEEEEDDSEDSDDLSKKS 134
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 322 (118.4 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 129/505 (25%), Positives = 233/505 (46%)
Query: 339 VVNRPDRRDGKLNKSAHS-GLVNVL-DDYSDDSVLEDEGSITLSGPRSTYML---PGKIG 393
++ + ++ GK+ + + GL N D + S++ + + P ++ + P
Sbjct: 323 LIRQCEQLGGKIQRGIEAWGLSNTATSDEGETSLVNFDQMKSFGTPANSSFITTPPASFS 382
Query: 394 N--MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451
L +Q G+ WL+ L+ GIL D+MGLGKT Q F + L + LV+A
Sbjct: 383 PDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIA 442
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK---GVLLTTYDIVRNNS 508
P + + +W++E KI Y+G+ V+ + + + +K V+LTTY + S
Sbjct: 443 PASTMENWLREFAKFCPKLKIELYYGSQVEREEIR-ERINSNKDSYNVMLTTYRLAAT-S 500
Query: 509 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
K+ R F+ ++ ++ + DEGH +KN +++R + L+ IP+ R++++GTP+QN
Sbjct: 501 KADR--LFLRNQK------FNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQN 552
Query: 569 NLKELWALFNFCCPELLGDN-KWFKEKYELPILRGND-KHALDREKRIGSAVAKELRERI 626
NLKEL +L F P + K + + +D + AL E+R+ A + +
Sbjct: 553 NLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRA-----KMMM 607
Query: 627 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD-- 684
P+ LRR K++V L KK +I + + +R+ Y+ F + + V S D
Sbjct: 608 APFVLRRKKSQVLD--------ALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDEN 659
Query: 685 --------GSPLA--------ALTILKKICDHPLLLTKRAAEDVLDGM-DSMLNPEDAAL 727
+ LA L L+K+ DHP+L +D+L M +++N
Sbjct: 660 VMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEPQYKK 719
Query: 728 AEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 787
A +L + D+ D E H N+ CK I S K P + ++ RK+ L+
Sbjct: 720 ANELYI-FEDMQYMSDI-ELH-NLCCKFPSINSFQLKDEPW----MDATKVRKLKKLLTN 772
Query: 788 SIGSKGYKFLRIDGTTKASDRVKIV 812
++ G + + T+ D +++V
Sbjct: 773 AV-ENGDRVVLFSQFTQVLDILQLV 796
Score = 258 (95.9 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 56/161 (34%), Positives = 92/161 (57%)
Query: 754 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVN 813
K+ + LL + G V++FSQ ++L+++Q + S KFLR DG+T+ R +++
Sbjct: 762 KVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLID 821
Query: 814 DFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 873
F + +FLL+++ GG G+ L A+ VI+ D ++NP D Q+ DRA+R+GQKK+V V
Sbjct: 822 QFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTV 881
Query: 874 YRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQD 914
Y+ + T+EE I R K L T + + E + D
Sbjct: 882 YKFVVKDTIEEHIQRLANAKIALDATLSGNAETVEAEDDDD 922
Score = 47 (21.6 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 24/126 (19%), Positives = 50/126 (39%)
Query: 127 DNYKGGNEIRDILND-LSARLEILSIDKRRVPKT--VDPEDDFSRL--VKNGDTGQGSKG 181
D+ E +++ +++RL+ILS +RV T + + F +L + T +
Sbjct: 34 DSLSEATEKANVMGGGMNSRLQILSEMSKRVQATAPISSLEHFKQLSDISPSFTSSANSI 93
Query: 182 NLP-EYXXXXXXXXXXXXXXXXXXGVTKDNVGGVVESVADEYEES--KGDDVADEEQETE 238
N P Y + N G V + ++ E+ K D+E+ ++
Sbjct: 94 NQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSETEPKMPSYMDDEEASD 153
Query: 239 NVGIGL 244
++ + L
Sbjct: 154 SLPLSL 159
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 287 (106.1 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 1021 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1080
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1081 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1140
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1141 VMIYRFVTRASVEERI 1156
Score = 240 (89.5 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 695 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 754
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 755 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQ 814
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 815 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 874
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 875 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 919
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 920 DLLGPHMLRRLKADVF 935
Score = 109 (43.4 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 916 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 967
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 968 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 1003
Score = 58 (25.5 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 867 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 920
Score = 54 (24.1 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 26/116 (22%), Positives = 52/116 (44%)
Query: 216 ESVADEYEESKGDDVADE--EQETENVGIGLKRNEPRWV-DNNLVSARESFESNLD---- 268
E + +E E S+ +D E E + L + +P+ + ++ R+ E + D
Sbjct: 17 EEMENEEEMSEEEDGGLEGFEDFFPAEPVSLPKKKPKKLKESKSKGKRKKKEGSNDELSE 76
Query: 269 GEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREE 324
EED SE EG ++ + KK ++++K ++ D + + + GG +E
Sbjct: 77 NEEDLEEKSESEGSDYSPTKKKKKKLKEKKEKKAKRKKRDEDEEDNED---GGLKE 129
Score = 40 (19.1 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 4 DDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVID-------EEKPQKVKIEGRRRLCKVS 56
+ K K + + +ND LS + + +E +S + ++K +K+K E + + K
Sbjct: 57 ESKSKGKRKKKEGSND--ELSENEEDLEEKSESEGSDYSPTKKKKKKLK-EKKEKKAKRK 113
Query: 57 SRDVDNTENRAVVDDEPNFS 76
RD D +N EP S
Sbjct: 114 KRDEDEEDNEDGGLKEPKSS 133
Score = 38 (18.4 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 786 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD 819
+ES K K L I A DRV+ + Q D
Sbjct: 1577 KESGTQKPKKSLEIQALPTALDRVEAEDKHQSSD 1610
Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 508 SKSLRGSSFISDEAGDDD 525
SK +GSS DE D D
Sbjct: 281 SKRKKGSSSEEDEPEDSD 298
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 287 (106.1 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 969 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1028
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1029 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1088
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1089 VMIYRFVTRASVEERI 1104
Score = 242 (90.2 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 643 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 702
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 703 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 762
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 763 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 822
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 823 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 867
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 868 DLLGPHMLRRLKADVF 883
Score = 109 (43.4 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 864 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 915
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 916 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 951
Score = 58 (25.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 815 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 868
Score = 51 (23.0 bits), Expect = 2.2e-46, Sum P(4) = 2.2e-46
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
+ EED SE EG ++ + KK +++KK + K+ D E N
Sbjct: 7 ENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDN 53
Score = 43 (20.2 bits), Expect = 1.5e-45, Sum P(4) = 1.5e-45
Identities = 24/80 (30%), Positives = 31/80 (38%)
Query: 210 NVGGVVESVADEYEESKGDDVA--DEEQETE-NVGIGLKRNEPRWVDNNLVSARESFESN 266
+V V S DE EES D + +E + +G K R N S S +
Sbjct: 220 SVSASVSSEEDEREESDFDSASIHSSSMRSECSAALGKKSKRRRKKKRNQGSPAHSPVDD 279
Query: 267 LDG-EEDGGSLSEV--EGDE 283
DG E D EV +G E
Sbjct: 280 GDGYETDHQDYCEVCQQGGE 299
Score = 39 (18.8 bits), Expect = 3.9e-45, Sum P(4) = 3.9e-45
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 220 DEYEESKGDDVADEEQETENVGIGL-KRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
DE E++ D +E+ E+E K+ + + D A+ + + + + + G L E
Sbjct: 3 DELSENEED--LEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDNEDGCLKE 60
Query: 279 VEGDEHL 285
+ L
Sbjct: 61 PKSSGQL 67
Score = 38 (18.4 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 268 DGEEDGGSLSEVEGDEHL 285
D E++GG E E D+H+
Sbjct: 346 DDEDEGGC--EEEEDDHM 361
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 287 (106.1 bits), Expect = 3.3e-46, Sum P(3) = 3.3e-46
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 886 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 945
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 946 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1005
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1006 VMIYRFVTRASVEERI 1021
Score = 242 (90.2 bits), Expect = 3.3e-46, Sum P(3) = 3.3e-46
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 560 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 619
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 620 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 679
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 680 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 739
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 740 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 784
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 785 DLLGPHMLRRLKADVF 800
Score = 109 (43.4 bits), Expect = 3.3e-46, Sum P(3) = 3.3e-46
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 781 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 832
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 833 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 868
Score = 58 (25.5 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 732 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 785
Score = 52 (23.4 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 714 DGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE-QHDNISCKISFILSLLDKLIPEGHNV 772
DG D P+D + EK + +K+D +E + ++ + K F+ ++ D E H +
Sbjct: 1519 DGND--FRPDDTRVEEKEPIETQQNGDKEDDEEGKKEDKNGKFKFMFNIADGGFTELHTL 1576
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 294 (108.6 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 94/259 (36%), Positives = 137/259 (52%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICG---FLAGLFHSRLIK 445
G G L P+Q EG+ WL H Q G ILGD+MGLGKT Q +LAG +
Sbjct: 42 GLTGIHLRPYQLEGVNWLAQCFHYQN-GCILGDEMGLGKTCQTIAVFIYLAGRLNDE--G 98
Query: 446 RALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVL-QDKG--VLLTTYD 502
L++ P ++LS+W +E+ Y G K + LQ L Q+ G VLLTTY+
Sbjct: 99 PFLILCPLSVLSNWKEEMERCAPGLCCVTYAGD--KEERAHLQQDLKQESGFHVLLTTYE 156
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
I L+ +SF+ W +++DE H +KN ++ KSL E A R++++
Sbjct: 157 IC------LKDASFLKSFP------WSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLT 204
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTPIQN+L+EL++L +F P+L KE+ E + R D +++E S A EL
Sbjct: 205 GTPIQNSLQELYSLLSFVEPDLFS-----KEEVEDFVQRYED---IEKE----SESASEL 252
Query: 623 RERIQPYFLRRLKNEVFHE 641
+ +QP+ LRR+K EV E
Sbjct: 253 YKLLQPFLLRRVKAEVAAE 271
Score = 282 (104.3 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 70/173 (40%), Positives = 104/173 (60%)
Query: 734 HIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESI 789
++ D E + F E D++ + S L LLDKL+ +GH VL+FSQ +ML+++Q+ +
Sbjct: 331 YLFDGVEPEPF-EIGDHL-IEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYM 388
Query: 790 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+GY + R+DG+ + +R + +F + + IFLL+++ GG+G+ LT AD VI VD
Sbjct: 389 DYRGYSYERVDGSVRGEERHLAIKNFGQQPIF-IFLLSTRAGGVGMNLTAADTVIFVDSD 447
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
+NP D Q+ RA+RIGQ K V V RL+ TVEE I RK K L T E
Sbjct: 448 FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIE 500
Score = 109 (43.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL-----PILRGN 603
S+L + AHR+ + + +L E F N +E Y L P L
Sbjct: 171 SVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNS-LQELYSLLSFVEPDLFSK 229
Query: 604 DK--HALDREKRIG--SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
++ + R + I S A EL + +QP+ LRR+K EV +A L KK E++++
Sbjct: 230 EEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEV--------AAELPKKTEVVIY 281
Query: 660 LRLTSCQRQLYEAFLNSEIVLS-AFDGSPLA------ALTILKKICDHPLL 703
+++ Q++ Y+A L ++ +S AF+ L+ L+K DHP L
Sbjct: 282 HGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVDHPYL 332
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 336 (123.3 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 97/276 (35%), Positives = 147/276 (53%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 679
K+L+++I P+ LRRLK +V +L K+E I+ + L+ Q + Y+ +
Sbjct: 565 KDLQKKISPFILRRLKKDV--------EKSLPSKSERILRVELSDIQTEYYKNIITKNYA 616
Query: 680 -LSAFD-GSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH 734
L+A + GS ++ L I LKK +HP L AED + +D +P + + M
Sbjct: 617 ALNAGNRGSQISLLNIMSELKKASNHPYLFD--GAEDKV--LDKAGSPSRENTLKGIVMS 672
Query: 735 IADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY 794
S K+ + LL +L EGH VLIFSQ +ML+++ + + KGY
Sbjct: 673 -----------------SGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGY 715
Query: 795 KFLRIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853
+F R+DGT +S R ++ F G FLL+++ GGLG+ L AD VI+ D WNP
Sbjct: 716 QFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQ 775
Query: 854 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
D Q++ RA+RIGQK V VYR ++ TVEE+I +
Sbjct: 776 ADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILER 811
Score = 255 (94.8 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 82/246 (33%), Positives = 121/246 (49%)
Query: 400 QREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSH 458
Q GL W+ L + + GIL D+MGLGKT+Q FL+ L ++R LVV P + +
Sbjct: 366 QLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVPA 425
Query: 459 WIKELTAVGLSAKIREYFGT--CVKT-RQYELQYVLQDK---GVLLTTYDIVRNNSKSLR 512
W + Y G KT R+YEL Y K VLLTTY+ + + L
Sbjct: 426 WQETFEKWAPDVNCVYYLGNGEARKTIREYEL-YNQNRKPKFNVLLTTYEYILKDKNEL- 483
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
+F W ++ +DE H +KN + ++L ++R++I+GTP+QNN+KE
Sbjct: 484 -GAFK----------WQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKE 532
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
L AL NF P K F E+ D +D E+ K+L+++I P+ LR
Sbjct: 533 LAALCNFLMP-----GK-FTIDQEI------DFETIDSEQE---QYIKDLQKKISPFILR 577
Query: 633 RLKNEV 638
RLK +V
Sbjct: 578 RLKKDV 583
Score = 42 (19.8 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 1013 YAFNPRDIKLNKKSSSPKNEAKLKESDIKE-RIKRLSQLIS 1052
Y F+ + K+ K+ SP E LK + ++ L QL+S
Sbjct: 644 YLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLS 684
Score = 40 (19.1 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 268 DGEEDGGSLSEVEGDE 283
D EDG S+ E E DE
Sbjct: 51 DDYEDGISMDEDENDE 66
Score = 38 (18.4 bits), Expect = 6.3e-46, Sum P(3) = 6.3e-46
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 149 LSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSK 180
+S+D+ + D +DD + +G G G K
Sbjct: 57 ISMDEDENDEFGDDDDDDDDIYYDGSFGAGKK 88
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 329 (120.9 bits), Expect = 4.1e-46, Sum P(5) = 4.1e-46
Identities = 95/328 (28%), Positives = 161/328 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 451
+G L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L + + L++
Sbjct: 497 VGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLIEKKHENKFLIIV 556
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL 511
P + +++W E S K+ Y G+ + R + + VLLTTY+ V L
Sbjct: 557 PLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYVIRERPML 616
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTPIQNNL 570
+ F + +MI+DEGH +KN ++ +++L + +R+I++GTP+QNNL
Sbjct: 617 --AKFH----------YSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNL 664
Query: 571 KELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELWAL NF P + K F + + P + ++ + V + L + ++P+
Sbjct: 665 PELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRPFL 724
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQL-YEA-FLNSEI--VLSAFDGS 686
LRRLK +V E D+ K + L+ Q+ L + A F+ +++ S G
Sbjct: 725 LRRLKKDV--EKDLPDKVEKVLKCNLS-GLQYVLYQQMLKHNALFVGADVGGAKSGIKGL 781
Query: 687 PLAALTILKKICDHPLLLTKRAAEDVLD 714
+ L+KIC+HP + + E VL+
Sbjct: 782 NNKIMQ-LRKICNHPFVFEE--VESVLN 806
Score = 270 (100.1 bits), Expect = 4.1e-46, Sum P(5) = 4.1e-46
Identities = 71/202 (35%), Positives = 113/202 (55%)
Query: 754 KISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV 809
++S LLD+++P+ GH VL+F Q ++++++++ + K K+LR+DG+TKA +R
Sbjct: 817 RVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQ 876
Query: 810 KIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 868
++ F D FLL+++ GGLGL L AD VI+ D WNP D Q+ DRA+RIGQK
Sbjct: 877 DMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQK 936
Query: 869 KDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTATEHKEQIRYFSQQDLRELL 919
+V + RL+T +VEE I + ++ + G F + +EQ + L+ LL
Sbjct: 937 NEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEEQEAF-----LKRLL 991
Query: 920 SLPKQGFDV----SLTQQQLHE 937
G D SL +L+E
Sbjct: 992 EADANGADNEENDSLDDDELNE 1013
Score = 43 (20.2 bits), Expect = 4.1e-46, Sum P(5) = 4.1e-46
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 106 PKFSDITVFDSPPKAK-TVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPED 164
P S + + P A T ND+ N ++ LN+L ++ L D ++ K + +
Sbjct: 17 PALSQVQL--QPGSANLTTQSNDSVVPKN--KEELNELLSKYYKLLFDSNKLKKEFEKSE 72
Query: 165 DFS 167
D S
Sbjct: 73 DKS 75
Score = 40 (19.1 bits), Expect = 4.1e-46, Sum P(5) = 4.1e-46
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEY 325
V + HQ +K E K++ + Q+ S E Y
Sbjct: 371 VRQINNFHQTTEKEESKKLERTAKQRLQALRSNDEEAY 408
Score = 40 (19.1 bits), Expect = 2.1e-16, Sum P(5) = 2.1e-16
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 605 KH-ALDREKRIGSAVA--KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
KH AL +G A + K L +I LR++ N F ++V S S+ ++W
Sbjct: 761 KHNALFVGADVGGAKSGIKGLNNKIMQ--LRKICNHPFVFEEVESVLNSSRLTNDLIW 816
Score = 39 (18.8 bits), Expect = 2.6e-16, Sum P(5) = 2.6e-16
Identities = 21/92 (22%), Positives = 40/92 (43%)
Query: 468 LSAKIREYFGTCV-KTRQYEL-QYVLQDKGVLLTTYDI-VRNNSKSLRGSSFISDEAGDD 524
L K ++ F T +T++ +L +L+ L T ++ +N + S S D
Sbjct: 150 LPEKFQKEFTTISDQTKKDDLVNEILEKLTELETDFETRAQNLGIKVPSPSSSSSSKTDK 209
Query: 525 DAIWDYM-ILDEGHLIKNPSTQRAKSLLEIPS 555
D + + + +I N +QR K L +P+
Sbjct: 210 DTLHSPLGTIHAEKIISNKISQRLKELENLPA 241
Score = 38 (18.4 bits), Expect = 4.1e-46, Sum P(5) = 4.1e-46
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 996 GNSSSSYLVARNVDG--AEYAFNPRDIKLNKKSSSPKNEAKLKESDIKE 1042
G S +L A + D E A ++ ++ K+ + L E DIK+
Sbjct: 1082 GLSEEQWLKAMDDDNDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKD 1130
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 320 (117.7 bits), Expect = 5.9e-46, Sum P(4) = 5.9e-46
Identities = 101/326 (30%), Positives = 152/326 (46%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MG GKT+Q + L H L L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLNGPYLII 786
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E SA Y GT R Q LLTTY+ +
Sbjct: 787 VPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNALLTTYEYI------ 840
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 841 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 952
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL- 688
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 953 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1002
Query: 689 -----AALTI------LKKICDHPLL 703
A T+ L+KIC+HP +
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYM 1028
Score = 285 (105.4 bits), Expect = 5.9e-46, Sum P(4) = 5.9e-46
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 761 LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ 816
LLD+++P+ H VL+F Q ++ ++++ + + +LR+DGTTK+ DR ++ F
Sbjct: 1061 LLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFN 1120
Query: 817 E-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
E G IFLL+++ GGLGL L AD V++ D WNP D Q+ DRA+RIGQ+ +V V R
Sbjct: 1121 EPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 876 LMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQ 934
L T +VEEKI +K + K Q F Q+ S ++ F ++ + +
Sbjct: 1181 LCTVNSVEEKI-----LAAAKYKLNVDQKVIQAGMFDQKSS----SHERRAFLQAILEHE 1231
Query: 935 LHEEHGDQHNMDESLEAHI 953
E D+ DE+L I
Sbjct: 1232 EENEEEDEVPDDETLNQMI 1250
Score = 44 (20.5 bits), Expect = 3.3e-21, Sum P(4) = 3.3e-21
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 868 KKDVVVYRLMTCGTVEEKIY-RKQIFKGGL-FKTATEHKEQIRYFSQQDLREL 918
K D V RL TC EEKI+ R + + + A K+ +R +L E+
Sbjct: 1293 KDDAEVERL-TCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM 1344
Score = 40 (19.1 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 719 MLNPEDAALAEKLAMHIADVAEKD 742
+L+P ++EK A I + A++D
Sbjct: 668 LLDPNSKEVSEKDARQIIETAKQD 691
Score = 38 (18.4 bits), Expect = 5.9e-46, Sum P(4) = 5.9e-46
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 31 ESRSVIDEEKPQKVKIEGRRR 51
E+R EK QK++ E +RR
Sbjct: 432 EARMTEKLEKQQKIEQERKRR 452
Score = 37 (18.1 bits), Expect = 5.9e-46, Sum P(4) = 5.9e-46
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1020 IKLNKKSSSPKNEAKLKESDIKERIK 1045
IKLNKK ++ K K+ + + K
Sbjct: 1546 IKLNKKEEKGRDTGKGKKRPNRGKAK 1571
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 306 (112.8 bits), Expect = 6.7e-46, Sum P(4) = 6.7e-46
Identities = 90/290 (31%), Positives = 153/290 (52%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 458
+Q+ G+ WL L+ IL DDMGLGKT Q+ F A L LVV P + L +
Sbjct: 575 YQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVPSSTLEN 634
Query: 459 WIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ-DKG---VLLTTYDIVRNNSKSLRGS 514
W++E + KI Y+G+ ++ R+ EL+ +L+ + G V++TTY++ N +
Sbjct: 635 WLREFQKFAPALKIEPYYGS-LQERE-ELRDILERNAGKYDVIVTTYNLAAGNKYDV--- 689
Query: 515 SFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELW 574
SF+ + ++ ++ DEGH++KN +++R L++I + R++++GTP+QNNLKEL
Sbjct: 690 SFLKNRN------FNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELM 743
Query: 575 ALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER----IQPYF 630
+L F P L K E ++ I + K D K +A+E R ++P+
Sbjct: 744 SLLEFIMPNLFISKK---ESFDA-IFKQRAK-TTDDNKNHNPLLAQEAITRAKTMMKPFI 798
Query: 631 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
LRR K++V L K+ I + L + Q+++Y+ + +IVL
Sbjct: 799 LRRRKDQVLKH--------LPPKHTHIQYCELNAIQKKIYDKEI--QIVL 838
Score = 280 (103.6 bits), Expect = 6.7e-46, Sum P(4) = 6.7e-46
Identities = 79/256 (30%), Positives = 128/256 (50%)
Query: 651 SKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAE 710
S KN +I+ LR S L+ N +I+ D I D P E
Sbjct: 863 SSKN-LIMALRKASLHPLLFRNIYNDKIITKMSDA-----------ILDEPAYAENGNKE 910
Query: 711 DVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGH 770
+ + M M + E KL + + K S KI + LL +I +
Sbjct: 911 YIKEDMSYMTDFE----LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQ 966
Query: 771 N-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 829
VLIFS ++L++++ + + YKFLR+DG+T+ +DR +++ F E PIF+L+++
Sbjct: 967 EKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTK 1026
Query: 830 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 889
GG G+ L A+ VI+ D ++NP D Q+ DRA+R+GQ K+V + L+T ++EEKI++
Sbjct: 1027 AGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQL 1086
Query: 890 QIFKGGLFKTATEHKE 905
K L +E K+
Sbjct: 1087 AKNKLALDSYISEDKK 1102
Score = 46 (21.3 bits), Expect = 6.7e-46, Sum P(4) = 6.7e-46
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 220 DEYEESKGDDVADEEQETE 238
D+YEE + +D DEE++ E
Sbjct: 503 DDYEE-EDEDYNDEEEDVE 520
Score = 41 (19.5 bits), Expect = 2.8e-45, Sum P(4) = 2.8e-45
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 206 VTKDNVGGV-VESVADEYEESKGDDVADEEQETEN 239
V +D V +E++ DE +S+ +D D E+E E+
Sbjct: 478 VVEDEDDDVDLEAIDDELPQSEHED-DDYEEEDED 511
Score = 40 (19.1 bits), Expect = 6.7e-46, Sum P(4) = 6.7e-46
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 57 SRDVDNTENRAVVDDEPNFSDITDFDSPL-QSK 88
++ + NT VV+DE + D+ D L QS+
Sbjct: 467 TKRIRNTTKPKVVEDEDDDVDLEAIDDELPQSE 499
Score = 40 (19.1 bits), Expect = 6.8e-46, Sum P(3) = 6.8e-46
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 18 NDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLC--KVSSRDVDNT 63
+D V +R + HV S + + KP +G+ RL ++S +D T
Sbjct: 531 DDEFVATRKNTHVISTTSRNGRKPIVKFFKGKPRLLSPEISLKDYQQT 578
Score = 39 (18.8 bits), Expect = 8.5e-46, Sum P(4) = 8.5e-46
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 125 ENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFS 167
++DN G N+ + N+ +A + S +K V+ D+ S
Sbjct: 409 DDDNDDGNNDNNNSNNNNTAGADATSKEKEDTKAVVEGFDETS 451
Score = 38 (18.4 bits), Expect = 4.8e-21, Sum P(4) = 4.8e-21
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 996 GNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDI-----KERIK-RLSQ 1049
G + + A NV + +FNP D + + + + KE +I K+ I+ ++ Q
Sbjct: 1028 GGFGINLVCANNVIIFDQSFNPHDDR--QAADRAHRVGQTKEVNITTLITKDSIEEKIHQ 1085
Query: 1050 LISNK 1054
L NK
Sbjct: 1086 LAKNK 1090
Score = 37 (18.1 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 147 EILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSK 180
E+ +I K+ K + + R++K+G+ + +K
Sbjct: 821 ELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAK 854
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 291 (107.5 bits), Expect = 9.9e-46, Sum P(2) = 9.9e-46
Identities = 94/261 (36%), Positives = 140/261 (53%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICG---FLAGLFHSRLIK 445
G G L P+Q +G+ WL HCQ G ILGD+MGLGKT Q +LAG +
Sbjct: 42 GLTGIHLRPYQLQGVNWLAQCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDE--G 98
Query: 446 RALVVAPKTLLSHWIKELT--AVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTT 500
L++ P ++LS+W +E+ A GLS Y G K ++ LQ L+ + VLLTT
Sbjct: 99 PFLILCPLSVLSNWKEEMERFAPGLSCVT--YAGD--KDKRACLQQDLKQESRFHVLLTT 154
Query: 501 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
Y+I L+ +SF+ W +++DE H +KN S+ K+L E ++
Sbjct: 155 YEIC------LKDASFLKSFP------WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLL 202
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTPIQN+L+EL++L +F P+L KE+ E + R D +++E S A
Sbjct: 203 LTGTPIQNSLQELYSLLSFVEPDLFS-----KEQVEDFVQRYQD---IEKE----SESAS 250
Query: 621 ELRERIQPYFLRRLKNEVFHE 641
EL + +QP+ LRR+K EV E
Sbjct: 251 ELYKLLQPFLLRRVKAEVATE 271
Score = 281 (104.0 bits), Expect = 9.9e-46, Sum P(2) = 9.9e-46
Identities = 68/173 (39%), Positives = 103/173 (59%)
Query: 734 HIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESI 789
++ D E + F E D++ + S L LLDKL+ +GH VL+FSQ +ML+++Q+ +
Sbjct: 328 YLFDGVEPEPF-EIGDHL-IEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYL 385
Query: 790 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+GY + R+DG+ + +R + +F + + FLL+++ GG+G+ LT AD VI D
Sbjct: 386 DYRGYSYERVDGSVRGEERHLAIKNFGQQPIFT-FLLSTRAGGVGMNLTAADTVIFFDSD 444
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
+NP D Q+ RA+RIGQ K V V RL+ TVEE +YRK K L T E
Sbjct: 445 FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 497
Score = 102 (41.0 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL-----PILRGN 603
S+L + AHR+ + + L E +F+ N +E Y L P L
Sbjct: 171 SVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNS-LQELYSLLSFVEPDLFSK 229
Query: 604 DK--HALDREKRIG--SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
++ + R + I S A EL + +QP+ LRR+K EV E L +K E++++
Sbjct: 230 EQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATE--------LPRKTEVVIY 281
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDGSPLA------ALTILKKICDHPLL 703
+++ Q++ Y+A L + L AF+ L+ L+K DHP L
Sbjct: 282 HGMSALQKKYYKAILMKD--LDAFENETAKKVKLQNVLSQLRKCVDHPYL 329
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 287 (106.1 bits), Expect = 1.0e-45, Sum P(5) = 1.0e-45
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 955 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1014
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1015 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1074
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1075 VMIYRFVTRASVEERI 1090
Score = 242 (90.2 bits), Expect = 1.0e-45, Sum P(5) = 1.0e-45
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 629 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 688
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 689 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 748
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 749 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 808
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 809 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 853
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 854 DLLGPHMLRRLKADVF 869
Score = 109 (43.4 bits), Expect = 1.0e-45, Sum P(5) = 1.0e-45
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 850 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 901
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 902 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 937
Score = 58 (25.5 bits), Expect = 2.3e-20, Sum P(4) = 2.3e-20
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 801 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 854
Score = 52 (23.4 bits), Expect = 1.0e-45, Sum P(5) = 1.0e-45
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
+ EED SE EG ++ + KK +++KK + K+ D E N
Sbjct: 9 ENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDEDDN 55
Score = 37 (18.1 bits), Expect = 1.0e-45, Sum P(5) = 1.0e-45
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 1009 DGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIKRLSQL 1050
DG E A R + K SP E KE + E+ K L +L
Sbjct: 1540 DGKERAREERLEEAEKAQPSP--EQLPKEEVLPEKEKILDKL 1579
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 303 (111.7 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 99/335 (29%), Positives = 169/335 (50%)
Query: 643 DVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSAFD-GSPLAALTILKKICD 699
DV S L K+E I+ + L+ Q Y+ L N ++ + GS ++ L I+ ++
Sbjct: 596 DVEKS--LPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVEL-- 651
Query: 700 HPLLLTKRAAED--VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISF 757
K+A+ + DG++ E I +D+ + S K+
Sbjct: 652 ------KKASNHPYLFDGVE-----------ESWMQKINSQGRRDEVLKGLIMNSGKMVL 694
Query: 758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE 817
+ LL +L +GH VLIFSQ +ML+++ + + +GY R+DGT A+ R ++ F
Sbjct: 695 LDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNA 754
Query: 818 GDVAP--IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 875
+ +P +FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+RIGQK V+VYR
Sbjct: 755 PN-SPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 813
Query: 876 LMTCGTVEEKIY----RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLT 931
L++ T+EE + RK I + + K++ + EL ++ K G ++
Sbjct: 814 LLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGAS-NMF 872
Query: 932 QQQLHEEHGDQHNMDESLEAHIQFLDTLG-IAGVS 965
+ + +++ + N+DE LE H + DT + G S
Sbjct: 873 KAENNQKKLEDMNLDEILE-HAEDHDTSNDVGGAS 906
Score = 274 (101.5 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 85/253 (33%), Positives = 125/253 (49%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVA 451
G L Q G+ W+ L + + GIL D+MGLGKT+Q FL+ L HS R LVV
Sbjct: 372 GGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVV 431
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKT---RQYELQYVLQDK---GVLLTTYDIVR 505
P + + W + L Y G R YE K +LLTTY+ V
Sbjct: 432 PLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYV- 490
Query: 506 NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP 565
L+ S +S+ W YM +DE H +KN + ++L + +++R++I+GTP
Sbjct: 491 -----LKDRSVLSNIK------WQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTP 539
Query: 566 IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 625
+QNN++EL AL +F P K F+ + E+ + A D E+ A + L+E
Sbjct: 540 LQNNIRELAALVDFLMP-----GK-FEIREEINL------EAPDEEQE---AYIRSLQEH 584
Query: 626 IQPYFLRRLKNEV 638
+QPY LRRLK +V
Sbjct: 585 LQPYILRRLKKDV 597
Score = 51 (23.0 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 266 NLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQS 316
+LD E + + E E D+ S T K RQKK+ V D RF+ ++
Sbjct: 106 DLDDEAESVTSEESESDD--SSYGGTPKKRSRQKKSNTY-VQDEIRFSSRN 153
Score = 43 (20.2 bits), Expect = 7.3e-45, Sum P(3) = 7.3e-45
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 115 DSPPKAKTVSENDNYKGGNEIRD 137
+S PK + + + +Y G E+RD
Sbjct: 355 NSRPKYRKLEQQPSYITGGELRD 377
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 287 (106.1 bits), Expect = 1.1e-45, Sum P(4) = 1.1e-45
Identities = 61/136 (44%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 939 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 998
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 999 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1058
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1059 VMIYRFVTRASVEERI 1074
Score = 242 (90.2 bits), Expect = 1.1e-45, Sum P(4) = 1.1e-45
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 613 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 672
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 673 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 732
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 733 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 792
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 793 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 837
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 838 DLLGPHMLRRLKADVF 853
Score = 109 (43.4 bits), Expect = 1.1e-45, Sum P(4) = 1.1e-45
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 834 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 885
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 886 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 921
Score = 58 (25.5 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 785 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 838
Score = 42 (19.8 bits), Expect = 1.1e-45, Sum P(4) = 1.1e-45
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 277 SEVEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
SE EG ++ + KK +++KK + K+ D E N
Sbjct: 2 SESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDEDDN 39
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 279 (103.3 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 86/266 (32%), Positives = 136/266 (51%)
Query: 389 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRAL 448
P + +L P+Q EGL +L + IL D+MGLGKT+Q LA LF LI L
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLIPH-L 324
Query: 449 VVAPKTLLSHWIKELTAVGLSAKIREYFGTC---VKTRQYELQYVLQD-KGVLLTTYDIV 504
V+AP + L +W +E + YFGT R++E Y+ +D K + +
Sbjct: 325 VIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEF-YLSKDQKKIKKKKSGQI 383
Query: 505 RNNSKSLRGSSFI---SDEAGD-DDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPS 555
+ SK R + S E + D A+ W+ MI+DEGH +KN ++ SL + S
Sbjct: 384 SSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSS 443
Query: 556 AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIG 615
HRI+++GTP+QNNL EL+ L +F G + F+E+++ D +++E++I
Sbjct: 444 NHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK-------D---INQEEQIS 493
Query: 616 SAVAKELRERIQPYFLRRLKNEVFHE 641
L + + P+ LRR+K +V +
Sbjct: 494 -----RLHKMLAPHLLRRVKKDVMKD 514
Score = 257 (95.5 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 61/175 (34%), Positives = 104/175 (59%)
Query: 752 SC-KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810
SC K+ + ++ KL +GH VLI++Q + ML+L+++ K +++ RIDG ++R
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQI 652
Query: 811 IVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F + FLL+++ GGLG+ L AD VI+ D WNP D Q++ RA+R+GQ
Sbjct: 653 RIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 712
Query: 870 DVVVYRLMTCGTVEEKIY----RKQIFKG---GLFKTATEHKEQ----IRYFSQQ 913
V++YRL+ GT+EE++ +K + + G KT ++E+ IRY S++
Sbjct: 713 KVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767
Score = 91 (37.1 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA-FLNSEIVL 680
L + + P+ LRR+K +V + + K E+I+ + L+S Q++ Y+A F + VL
Sbjct: 495 LHKMLAPHLLRRVKKDVMKD--------MPPKKELILRVDLSSLQKEYYKAIFTRNYQVL 546
Query: 681 SAFDGSPLAALTI---LKKICDHPLLL 704
+ G+ ++ I L+K+C HP +L
Sbjct: 547 TKKGGAQISLNNIMMELRKVCCHPYML 573
Score = 41 (19.5 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 270 EEDGGSLSEVEGDEHLSRVHETKKHH--QRQKKNEPK 304
EE ++ +E +SR+H+ H +R KK+ K
Sbjct: 477 EEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMK 513
Score = 40 (19.1 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 750
A+ED G ++ +DAA+ + L + + AE+ ++ +N
Sbjct: 770 ASEDDEAGKSGKIHYDDAAIDKLLDRDLVE-AEEVSVDDEEEN 811
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 341 (125.1 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 100/323 (30%), Positives = 161/323 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL--FHSRLIKRALV 449
IG L +Q EGL WL SL+ GIL D+MGLGKT+Q A L F + + + L+
Sbjct: 880 IGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNINVKNLI 939
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSK 509
+ P + L +WI E S + Y G ++ + + + Q + +TT+D+V
Sbjct: 940 IVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAKKLLEQTFDICITTFDLV----- 994
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569
++ SF+ + W+Y+++DEGH +KN ++ L E S +RI+++GTP+QNN
Sbjct: 995 -IKEKSFLMKIS------WNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNN 1047
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDK----HALDREKRIGSAVAKELRER 625
L ELW+L NF P++ F EK+ + L N+K H + E+ + + L
Sbjct: 1048 LSELWSLLNFLLPKIFSSCVDF-EKWFVKSLH-NEKDVYEHITEEEQLL---IINRLHSV 1102
Query: 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG 685
+ P+ LRR+K +V +L KK E + + L+ Q+ LY+ +G
Sbjct: 1103 LLPFMLRRVKKDVLK--------SLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNG 1154
Query: 686 SPLAAL--TI---LKKICDHPLL 703
S + I L+KI +HP L
Sbjct: 1155 SITTKIFQNIVMQLRKIVNHPYL 1177
Score = 153 (58.9 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 32/69 (46%), Positives = 46/69 (66%)
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
A IF+L+++ G LGL L AD VI+ D +NP D Q++ R +RIGQK V V+R +T
Sbjct: 1403 AMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRFITLS 1462
Query: 881 TVEEKIYRK 889
VEE +++K
Sbjct: 1463 GVEELVFKK 1471
Score = 124 (48.7 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 743 DFQEQHDNISCKISF-ILS-LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRID 800
D+ + I C F +L +L KL+ H VLIFSQ K++N++ + + +GYK+ R+D
Sbjct: 1181 DYNIDENIIKCSGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLD 1240
Query: 801 GTTKASDRVKIVNDF 815
G +R KI++ F
Sbjct: 1241 GNIGLQERKKIIDQF 1255
Score = 61 (26.5 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 38/162 (23%), Positives = 68/162 (41%)
Query: 220 DEYEESKGDDVADE-EQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
DE E K + +E + E EN +NE D+ + + +E N E+D E
Sbjct: 142 DEMENKKEKNNKNEKDDEMENKKEKNNKNEK---DDEMENKKEKNNKN---EKD----DE 191
Query: 279 VEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKL 338
+E + + +E + +K+ K D E N + + E DDE + K+
Sbjct: 192 MENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKE--KNNKNEKDDEIKENM--DKV 247
Query: 339 VVNRPDRRDGKLNKSA-HSGLVNVLD--DYSDDSVLEDEGSI 377
+ N+ ++ + NK N+ D D S+ ++L+D I
Sbjct: 248 MENQLNQSNILYNKDRIRKNRNNLKDEKDVSNKNILDDNKDI 289
Score = 58 (25.5 bits), Expect = 3.7e-45, Sum P(4) = 3.7e-45
Identities = 27/121 (22%), Positives = 46/121 (38%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEP 303
LKR + + +N S +E N E+D E+E + + +E + +K+
Sbjct: 116 LKRKKKKDKENKSKSKKEKNNKN---EKD----DEMENKKEKNNKNEKDDEMENKKEKNN 168
Query: 304 KRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLD 363
K D E N + + E DDE + K N + +D ++ N D
Sbjct: 169 KNEKDDEMENKKE--KNNKNEKDDE-----MENKKEKNNKNEKDDEMENKKEKNNKNEKD 221
Query: 364 D 364
D
Sbjct: 222 D 222
Score = 48 (22.0 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 283 EHLSRVHETKKHHQRQKKNEP--KRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVV 340
E+L R + K ++ + K E K D E N + + E DDE + K
Sbjct: 114 EYLKRKKKKDKENKSKSKKEKNNKNEKDDEMENKKE--KNNKNEKDDE-----MENKKEK 166
Query: 341 NRPDRRDGKLNKSAHSGLVNVLDD 364
N + +D ++ N DD
Sbjct: 167 NNKNEKDDEMENKKEKNNKNEKDD 190
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 42 QKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVS 91
+ + + G + +SS++ +T +++V E +I DF + K V+
Sbjct: 1349 ENMNMSGNENIKMISSQNEKDTSSQSVKISELKKEEINDFQI-MDDKNVN 1397
Score = 41 (19.5 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 290 ETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
E K R+KK K+++ + +N + + D+ +D
Sbjct: 548 EQHKKGNRKKKINTKKLYHHDNYNNNNNNNNNDNNNDNNND 588
Score = 40 (19.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 720 LNPEDAA-LAEKLAMHIADVA----EKDDFQEQHDNISCKISF 757
+N ED L+E L + I + E +D+ +H +I C++ F
Sbjct: 44 MNEEDFLYLSEHLKIRIDNEIFMSQELNDYINKHIDIICELHF 86
Score = 39 (18.8 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 599 ILRGNDK--HALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEM 656
I R N+ H D K+I KEL+E +++++ N+ ++++S K M
Sbjct: 629 IFRSNEVSIHFNDDIKKIEHVAKKELQE-----YIKQIHNKSKIHNNISSL-----KQYM 678
Query: 657 IV--WLRLTSCQRQLYEAFLNSE 677
++ W LT + Y L+ E
Sbjct: 679 LISNWKELT--KHNNYMTLLSEE 699
Score = 39 (18.8 bits), Expect = 7.5e-05, Sum P(5) = 7.5e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG--TTKASDRV-----KIVN 813
K +P+ + I + ++ + I +KG+K + +G TTK + KIVN
Sbjct: 1117 KSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGSITTKIFQNIVMQLRKIVN 1173
Score = 38 (18.4 bits), Expect = 4.3e-43, Sum P(4) = 4.3e-43
Identities = 20/113 (17%), Positives = 46/113 (40%)
Query: 215 VESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG 274
+E+ ++ +++ DD + ++E N E + NN + + N+D +
Sbjct: 192 MENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMEN- 250
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGER----FNGQSFVSGGRE 323
L++ + R+ + + + + +K K + D + F Q SG E
Sbjct: 251 QLNQSNILYNKDRIRKNRNNLKDEKDVSNKNILDDNKDIVEFKLQDISSGYSE 303
Score = 37 (18.1 bits), Expect = 5.5e-43, Sum P(4) = 5.5e-43
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 266 NLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPK 304
N D E+ + + + + L VH H Q+ N K
Sbjct: 799 NEDNEKCHKNYNSKDNNNILQSVHNLTTHGQQNGYNNKK 837
Score = 37 (18.1 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 506 NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 550
++S L S DE D+ I + DE + S ++AK++
Sbjct: 325 DDSSFLFSCSSDCDEETSDEEILSTIHFDEKEMSTLKSLEKAKNV 369
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 341 (125.1 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 100/323 (30%), Positives = 161/323 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL--FHSRLIKRALV 449
IG L +Q EGL WL SL+ GIL D+MGLGKT+Q A L F + + + L+
Sbjct: 880 IGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNINVKNLI 939
Query: 450 VAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSK 509
+ P + L +WI E S + Y G ++ + + + Q + +TT+D+V
Sbjct: 940 IVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAKKLLEQTFDICITTFDLV----- 994
Query: 510 SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 569
++ SF+ + W+Y+++DEGH +KN ++ L E S +RI+++GTP+QNN
Sbjct: 995 -IKEKSFLMKIS------WNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNN 1047
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDK----HALDREKRIGSAVAKELRER 625
L ELW+L NF P++ F EK+ + L N+K H + E+ + + L
Sbjct: 1048 LSELWSLLNFLLPKIFSSCVDF-EKWFVKSLH-NEKDVYEHITEEEQLL---IINRLHSV 1102
Query: 626 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG 685
+ P+ LRR+K +V +L KK E + + L+ Q+ LY+ +G
Sbjct: 1103 LLPFMLRRVKKDVLK--------SLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNG 1154
Query: 686 SPLAAL--TI---LKKICDHPLL 703
S + I L+KI +HP L
Sbjct: 1155 SITTKIFQNIVMQLRKIVNHPYL 1177
Score = 153 (58.9 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 32/69 (46%), Positives = 46/69 (66%)
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
A IF+L+++ G LGL L AD VI+ D +NP D Q++ R +RIGQK V V+R +T
Sbjct: 1403 AMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFRFITLS 1462
Query: 881 TVEEKIYRK 889
VEE +++K
Sbjct: 1463 GVEELVFKK 1471
Score = 124 (48.7 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 743 DFQEQHDNISCKISF-ILS-LLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRID 800
D+ + I C F +L +L KL+ H VLIFSQ K++N++ + + +GYK+ R+D
Sbjct: 1181 DYNIDENIIKCSGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLD 1240
Query: 801 GTTKASDRVKIVNDF 815
G +R KI++ F
Sbjct: 1241 GNIGLQERKKIIDQF 1255
Score = 61 (26.5 bits), Expect = 1.8e-45, Sum P(4) = 1.8e-45
Identities = 38/162 (23%), Positives = 68/162 (41%)
Query: 220 DEYEESKGDDVADE-EQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSE 278
DE E K + +E + E EN +NE D+ + + +E N E+D E
Sbjct: 142 DEMENKKEKNNKNEKDDEMENKKEKNNKNEK---DDEMENKKEKNNKN---EKD----DE 191
Query: 279 VEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKL 338
+E + + +E + +K+ K D E N + + E DDE + K+
Sbjct: 192 MENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKE--KNNKNEKDDEIKENM--DKV 247
Query: 339 VVNRPDRRDGKLNKSA-HSGLVNVLD--DYSDDSVLEDEGSI 377
+ N+ ++ + NK N+ D D S+ ++L+D I
Sbjct: 248 MENQLNQSNILYNKDRIRKNRNNLKDEKDVSNKNILDDNKDI 289
Score = 58 (25.5 bits), Expect = 3.7e-45, Sum P(4) = 3.7e-45
Identities = 27/121 (22%), Positives = 46/121 (38%)
Query: 244 LKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEP 303
LKR + + +N S +E N E+D E+E + + +E + +K+
Sbjct: 116 LKRKKKKDKENKSKSKKEKNNKN---EKD----DEMENKKEKNNKNEKDDEMENKKEKNN 168
Query: 304 KRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLD 363
K D E N + + E DDE + K N + +D ++ N D
Sbjct: 169 KNEKDDEMENKKE--KNNKNEKDDE-----MENKKEKNNKNEKDDEMENKKEKNNKNEKD 221
Query: 364 D 364
D
Sbjct: 222 D 222
Score = 48 (22.0 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 283 EHLSRVHETKKHHQRQKKNEP--KRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVV 340
E+L R + K ++ + K E K D E N + + E DDE + K
Sbjct: 114 EYLKRKKKKDKENKSKSKKEKNNKNEKDDEMENKKE--KNNKNEKDDE-----MENKKEK 166
Query: 341 NRPDRRDGKLNKSAHSGLVNVLDD 364
N + +D ++ N DD
Sbjct: 167 NNKNEKDDEMENKKEKNNKNEKDD 190
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 42 QKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVS 91
+ + + G + +SS++ +T +++V E +I DF + K V+
Sbjct: 1349 ENMNMSGNENIKMISSQNEKDTSSQSVKISELKKEEINDFQI-MDDKNVN 1397
Score = 41 (19.5 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 290 ETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
E K R+KK K+++ + +N + + D+ +D
Sbjct: 548 EQHKKGNRKKKINTKKLYHHDNYNNNNNNNNNDNNNDNNND 588
Score = 40 (19.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 720 LNPEDAA-LAEKLAMHIADVA----EKDDFQEQHDNISCKISF 757
+N ED L+E L + I + E +D+ +H +I C++ F
Sbjct: 44 MNEEDFLYLSEHLKIRIDNEIFMSQELNDYINKHIDIICELHF 86
Score = 39 (18.8 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 599 ILRGNDK--HALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEM 656
I R N+ H D K+I KEL+E +++++ N+ ++++S K M
Sbjct: 629 IFRSNEVSIHFNDDIKKIEHVAKKELQE-----YIKQIHNKSKIHNNISSL-----KQYM 678
Query: 657 IV--WLRLTSCQRQLYEAFLNSE 677
++ W LT + Y L+ E
Sbjct: 679 LISNWKELT--KHNNYMTLLSEE 699
Score = 39 (18.8 bits), Expect = 7.5e-05, Sum P(5) = 7.5e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG--TTKASDRV-----KIVN 813
K +P+ + I + ++ + I +KG+K + +G TTK + KIVN
Sbjct: 1117 KSLPKKYEYNIHIELSLYQKILYKQIQTKGFKQVNHNGSITTKIFQNIVMQLRKIVN 1173
Score = 38 (18.4 bits), Expect = 4.3e-43, Sum P(4) = 4.3e-43
Identities = 20/113 (17%), Positives = 46/113 (40%)
Query: 215 VESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGG 274
+E+ ++ +++ DD + ++E N E + NN + + N+D +
Sbjct: 192 MENKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMEN- 250
Query: 275 SLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGER----FNGQSFVSGGRE 323
L++ + R+ + + + + +K K + D + F Q SG E
Sbjct: 251 QLNQSNILYNKDRIRKNRNNLKDEKDVSNKNILDDNKDIVEFKLQDISSGYSE 303
Score = 37 (18.1 bits), Expect = 5.5e-43, Sum P(4) = 5.5e-43
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 266 NLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPK 304
N D E+ + + + + L VH H Q+ N K
Sbjct: 799 NEDNEKCHKNYNSKDNNNILQSVHNLTTHGQQNGYNNKK 837
Score = 37 (18.1 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 506 NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 550
++S L S DE D+ I + DE + S ++AK++
Sbjct: 325 DDSSFLFSCSSDCDEETSDEEILSTIHFDEKEMSTLKSLEKAKNV 369
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 291 (107.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 94/261 (36%), Positives = 140/261 (53%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICG---FLAGLFHSRLIK 445
G G L P+Q +G+ WL HCQ G ILGD+MGLGKT Q +LAG +
Sbjct: 42 GLTGIHLRPYQLQGVNWLAQCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDE--G 98
Query: 446 RALVVAPKTLLSHWIKELT--AVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTT 500
L++ P ++LS+W +E+ A GLS Y G K ++ LQ L+ + VLLTT
Sbjct: 99 PFLILCPLSVLSNWKEEMERFAPGLSCVT--YAGD--KDKRACLQQDLKQESRFHVLLTT 154
Query: 501 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
Y+I L+ +SF+ W +++DE H +KN S+ K+L E ++
Sbjct: 155 YEIC------LKDASFLKSFP------WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLL 202
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTPIQN+L+EL++L +F P+L KE+ E + R D +++E S A
Sbjct: 203 LTGTPIQNSLQELYSLLSFVEPDLFS-----KEQVEDFVQRYQD---IEKE----SESAS 250
Query: 621 ELRERIQPYFLRRLKNEVFHE 641
EL + +QP+ LRR+K EV E
Sbjct: 251 ELYKLLQPFLLRRVKAEVATE 271
Score = 277 (102.6 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 734 HIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESI 789
++ D E + F E D++ + S L LLDKL+ +GH VL+FSQ +ML+++Q+ +
Sbjct: 328 YLFDGVEPEPF-EIGDHL-IEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYL 385
Query: 790 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF-LLTSQVGGLGLTLTKADRVIVVDP 848
+GY + R+DG+ + +R + +F + PIF L+++ GG+G+ LT AD VI D
Sbjct: 386 DYRGYSYERVDGSVRGEERHLAIKNFGQ---QPIFTFLSTRAGGVGMNLTAADTVIFFDS 442
Query: 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
+NP D Q+ RA+RIGQ K V V RL+ TVEE +YRK K L T E
Sbjct: 443 DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 496
Score = 101 (40.6 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL-----PILRGN 603
S+L + AHR+ + + L E +F+ N +E Y L P L
Sbjct: 171 SVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNS-LQELYSLLSFVEPDLFSK 229
Query: 604 DK--HALDREKRIG--SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
++ + R + I S A EL + +QP+ LRR+K EV E L +K E++++
Sbjct: 230 EQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATE--------LPRKTEVVIY 281
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDGSPLA------ALTILKKICDHPLL 703
+++ Q++ Y+A L + L AF+ L+ L+K DHP L
Sbjct: 282 HGMSALQKKYYKAILMKD--LDAFENEMAKKVKLQNVLSQLRKCVDHPYL 329
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 514 (186.0 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 146/510 (28%), Positives = 267/510 (52%)
Query: 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454
+L P+Q+ GL WL LH IL D+MGLGKT+Q FLA L+ + LVV P +
Sbjct: 473 VLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSGPHLVVVPAS 532
Query: 455 LLSHWIKELTAVGLSAKIREYFGTCVKTR--QYELQYVLQDKGVLLTTYDIVRNNSKSLR 512
+ +WI+E S I Y+G+ + + +Y++ + + V++TTY+ ++++
Sbjct: 533 TMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYNCAISSAEDR- 591
Query: 513 GSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKE 572
S F + ++ + DEGH++KN S R + L+ + + R++++GTP+QNNL E
Sbjct: 592 -SLFRRLKL-------NFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLE 643
Query: 573 LWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 632
L +L NF P + + ++ + D+ + ++RI A AK++ ++P+ LR
Sbjct: 644 LMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERI--AHAKQI---MKPFILR 698
Query: 633 RLKNEVFHE----DDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPL 688
R+K+EV + D +SKK E + L ++ + NSE+ +
Sbjct: 699 RVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSIDATEKNSELCNVMMHLRKM 758
Query: 689 AALTILKK---ICDHPLLLTKRAAEDVL--DGMDSMLNPEDAALAEKLAMH--IADVAEK 741
A +L + D ++K ++ D ++ ED + +H +
Sbjct: 759 ANHPLLHRQYYTADRLRTMSKLMLKEPTHCDANPDLIF-EDMEVMTDFELHRLCNEFTTL 817
Query: 742 DDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRI 799
++ + + I S K + + LL + +G V++FSQ ML++I+ + ++++R+
Sbjct: 818 SQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRL 877
Query: 800 DGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858
DG T+ S+R+ ++++F + D+ IFLL+++ GGLG+ LT A+ VI+ D NP D Q+
Sbjct: 878 DGKTQISERIHLIDEFNTDMDIF-IFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQA 936
Query: 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
DR +R+GQ K+V V +L+ GT+EE + +
Sbjct: 937 EDRCHRVGQTKEVKVIKLIGKGTIEESMLK 966
Score = 44 (20.5 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 21/101 (20%), Positives = 42/101 (41%)
Query: 282 DEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVN 341
D+ +S + ++ Q K++ H ++ S + D EDD + V + +
Sbjct: 62 DKGVSFLDSDSENEDHQSKSKFSSTHQQSHPREENGTSDSVTD-DSEDDYLAVK-RPSAS 119
Query: 342 RPDRRDGKLNKSAHSGLVNVLDDYSDDSVLE-DEGSITLSG 381
+DG K+ L + ++D +L+ E + TL G
Sbjct: 120 TAQVKDGSKYKNLQR-LKEIFPKQNNDELLKLIESTSTLDG 159
Score = 40 (19.1 bits), Expect = 7.9e-45, Sum P(2) = 7.9e-45
Identities = 17/105 (16%), Positives = 43/105 (40%)
Query: 271 EDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
++ SLSE + ++ + V + ++H K E + V ++ + + +DE D
Sbjct: 209 DNDSSLSEDDWEKQEASVKKLQRHFPDLDKEELREVLQEHDWSFHEALEALKLFAEDETD 268
Query: 331 CVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEG 375
+ + K V+ + + NK+ + + + + + G
Sbjct: 269 ALQNAAKKEVSN-GKEFSRSNKNDNKSSAKAKANQNSNKAMAQNG 312
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 314 (115.6 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 88/315 (27%), Positives = 157/315 (49%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGF--LAGL--FHSRLIKRALVVA 451
L P+Q+ GL WL L G G L DDMGLGKT+Q+ L + R + L++
Sbjct: 533 LRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQDRGVGPTLLLC 592
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL 511
P +L+ +W +E + ++ + G + L+ L+ ++++TY +
Sbjct: 593 PMSLVGNWPQEAARFAPNLRVYAHHGGA-RLHGEALRDHLERTDLVVSTYTTATRDI--- 648
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
DE + + W+ ++LDE +KN ++ AK++ + +AHR+ ++GTP++N L
Sbjct: 649 -------DELAEYE--WNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLA 699
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW++ +F P LLG ++ F+ +Y +PI ++H + A+ LR +PY L
Sbjct: 700 ELWSIMDFLNPGLLGSSERFRTRYAIPI----ERHG-------HTEPAERLRASTRPYIL 748
Query: 632 RRLKNEVFHEDDVTSSATLSKKNEMIVWLR--LTSCQRQLYEAFLNSEIVLSAFDGSPLA 689
RRLK + DD+ + + ++ + + E N+E + G+ LA
Sbjct: 749 RRLKTDPAIIDDLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERR--GNVLA 806
Query: 690 ALTILKKICDHPLLL 704
A+ LK++C+HP L
Sbjct: 807 AMAKLKQVCNHPAQL 821
Score = 254 (94.5 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 62/175 (35%), Positives = 99/175 (56%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLR----IDGTTKASD 807
S K+ + +L++++ EG VL F+Q + L+ + ++ + R + G T
Sbjct: 832 SGKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKR 891
Query: 808 RVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 867
R ++V FQ GD PIFLL+ + GG GL LT A+ V+ +D WNP+ +NQ+ DRA+RIGQ
Sbjct: 892 RDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQ 951
Query: 868 KKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK-TATEHKEQIRYFSQQDLRELLSL 921
++ V V + + GT+EEKI K L T+ + + S +DLRE+ +L
Sbjct: 952 RRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELSTRDLREVFAL 1006
Score = 39 (18.8 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 415 KGGILGDDMGLGKTMQICGFLAGLFHSR 442
+G +L + K Q+C A L H R
Sbjct: 801 RGNVLA---AMAKLKQVCNHPAQLLHDR 825
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 316 (116.3 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 115/420 (27%), Positives = 198/420 (47%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGN--MLFPHQREGLRW 406
KL S +G +N++D S + D P+ P + + L +Q G+ W
Sbjct: 507 KLEMS--NGELNIVDMESVPTEAADNSDF----PKFVTEQPKTLASDVQLKSYQLVGVNW 560
Query: 407 LWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 466
L L+ Q GIL D+MGLGKT Q+ F A L LVV P + L +W++EL
Sbjct: 561 LHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARF 620
Query: 467 GLSAKIREYFGTCVKTRQYELQYVLQDK----GVLLTTYDIVRNNSKSLRGSSFISDEAG 522
S ++ Y+G+ + + ++ +++ +L+TTY + NN + SF+ +
Sbjct: 621 CPSLRVEPYYGS--QQERANIREAIEENEIKYDILVTTYQLATNNKED---RSFLKHQN- 674
Query: 523 DDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCP 582
+D + DEGH +KN ++R K L+ + + R++++GTP+QNNLKEL +L F P
Sbjct: 675 -----FDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFILP 729
Query: 583 ELLGDNK-----WFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNE 637
+ + FK K P + + AL ++RI A + + P+ LRR KN+
Sbjct: 730 NMFDSDMDDLDVIFKAK---PTADADIEQALLSKQRISRA-----KTMMTPFVLRRRKNQ 781
Query: 638 VFHE----DDVTSSATLSKKNEMIVWLRLTSCQR--QLYEAFLNSEIVLS--AFDGSPLA 689
V ++ + LS+ N++ ++ R + Q+ QL ++ + DG L+
Sbjct: 782 VLNDLPKKTQIIEHCKLSE-NQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLS 840
Query: 690 A---LTILKKICDHPLLLTKRAAEDVLDGM-DSMLNPEDAALAEKLAMHIADVAEKDDFQ 745
A L L+K +H LL K ++ L M ++ E A + ++ D+ DF+
Sbjct: 841 AGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIY-EDMEVMSDFE 899
Score = 255 (94.8 bits), Expect = 3.2e-45, Sum P(2) = 3.2e-45
Identities = 51/137 (37%), Positives = 89/137 (64%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S KI + LL K+ EG +L+FSQ +ML+++++ + + ++R+DG+T+ R I
Sbjct: 923 SGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDI 982
Query: 812 VNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
++ F + + +FLL+++ GG G+ L A+ VI+ D ++NP D Q+ DRA+R+GQ ++V
Sbjct: 983 IDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREV 1042
Query: 872 VVYRLMTCGTVEEKIYR 888
V RL+T T+EE I +
Sbjct: 1043 TVIRLITDNTIEEYIQK 1059
Score = 37 (18.1 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 120 AKTVSENDNYKGGNE 134
AK + + + YK NE
Sbjct: 871 AKDIMQEEQYKNANE 885
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 307 (113.1 bits), Expect = 3.3e-45, Sum P(4) = 3.3e-45
Identities = 89/281 (31%), Positives = 139/281 (49%)
Query: 365 YSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMG 424
+ D VL+ + +Y + G G L +Q GL WL C+G IL D+MG
Sbjct: 449 FKDCKVLKQRPRFVALKKQPSY-IGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMG 507
Query: 425 LGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG-----T 478
LGKT+Q FL LFH +L L+V P + L+ W +E+ Y G
Sbjct: 508 LGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRN 567
Query: 479 CVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
++T ++ + K +LLTTY+I+ + L G + W ++ +DE H
Sbjct: 568 MIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLN------------WAFIGVDEAH 615
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
+KN + K+L++ S HR++I+GTP+QN+LKELW+L +F PE + W E +E
Sbjct: 616 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF--SSW--EDFE- 670
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
++H RE G A L + ++P+ LRR+K +V
Sbjct: 671 ------EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV 700
Score = 206 (77.6 bits), Expect = 3.3e-45, Sum P(4) = 3.3e-45
Identities = 48/117 (41%), Positives = 69/117 (58%)
Query: 759 LSLLDKLI----PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVND 814
L LLDKL+ G+ VLIFSQ +ML+++ E + + + F R+DG+ R + +
Sbjct: 788 LILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIGELRRQALDHF 847
Query: 815 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 871
G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RIGQKK V
Sbjct: 848 NAXGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 81 (33.6 bits), Expect = 3.3e-45, Sum P(4) = 3.3e-45
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 604 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT 663
++H RE G A L + ++P+ LRR+K +V +L K E I+ + ++
Sbjct: 671 EEHGKGRE--YGYA---SLHKELEPFLLRRVKKDV--------EKSLPAKVEQILRMEMS 717
Query: 664 SCQRQLYEAFL--NSEIVLSAFDGSPLAALTI---LKKICDHPLLL 704
+ Q+Q Y+ L N + + GS L I LKK C+H L+
Sbjct: 718 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 763
Score = 65 (27.9 bits), Expect = 3.3e-45, Sum P(4) = 3.3e-45
Identities = 22/106 (20%), Positives = 44/106 (41%)
Query: 225 SKGDDVADEEQETENVGIGLKR-NEPRWVDNNLVSARES-FESNLDGEEDGGSLSEVEGD 282
S+ D + E+ + + + K+ N+ W + S +S +S + E D S E D
Sbjct: 121 SEEDSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESEDERDKSSCDGTESD 180
Query: 283 EHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDE 328
+++K R K K++ ++ S E+YD++
Sbjct: 181 YEPKNKVKSRKPQNRSKSKSGKKILGQKKRQIDSSEDEDDEDYDND 226
Score = 57 (25.1 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 12 EAEVRTNDCSVLSRDHDHVESRSVIDEEKPQ-KVKIEGRRRLCKVSSRDVDNTENRAVVD 70
E+E + S + D+ E ++ + KPQ + K + +++ R +D++E+ D
Sbjct: 164 ESEDERDKSSCDGTESDY-EPKNKVKSRKPQNRSKSKSGKKILGQKKRQIDSSEDE---D 219
Query: 71 DEPNFSDITDFDSPLQSKTVSAMVNI 96
DE D+D+ +S A VN+
Sbjct: 220 DE-------DYDNDKRSSRRQATVNV 238
Score = 47 (21.6 bits), Expect = 2.4e-43, Sum P(4) = 2.4e-43
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 258 SARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERF 312
S+ +S S+ D D GS SE E D T + ++ Q K P +V DG F
Sbjct: 43 SSSQSGSSDSDSGSDSGSQSESESD--------TSRENKVQAK--PPKV-DGAEF 86
Score = 46 (21.3 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 75 FSDITDFDSPLQSKTVSAMVN-IESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGN 133
+S+ + D L SK ++ SR P F D V P+ + + +Y GG+
Sbjct: 416 YSECSWEDGALISKKFQTCIDEYFSRNQSKTTP-FKDCKVLKQRPRFVALKKQPSYIGGH 474
Query: 134 E---IRDI-LNDLS 143
E +RD LN L+
Sbjct: 475 EGLELRDYQLNGLN 488
Score = 37 (18.1 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 243 GLKRNEPRWVDNNLVSARESFESNLD 268
GL +E W D L+S + F++ +D
Sbjct: 413 GLPYSECSWEDGALISKK--FQTCID 436
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 284 (105.0 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 86/300 (28%), Positives = 144/300 (48%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML-------PGKI-GNMLFPHQ 400
++ K L++ DY ++E LS R T + P + G L +Q
Sbjct: 132 RIKKDDKQSLISA-GDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQ 190
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHW 459
GL WL SL+ G GIL D+MGLGKT+Q L L H R I +V+ PK+ L +W
Sbjct: 191 IRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 250
Query: 460 IKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFIS 518
+ E S ++ + G + ++ + V +T+Y++V I
Sbjct: 251 MNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV------------IK 298
Query: 519 DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578
+++ W Y+++DE H IKN ++ ++ + E S +R++++GTP+QNNL ELWAL N
Sbjct: 299 EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLN 358
Query: 579 FCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
F P++ F ++ K+ L +K + + L ++P+ LRR+K +V
Sbjct: 359 FLLPDVFNSADDFDSWFDT-------KNCLGDQKLV-----ERLHAVLKPFLLRRIKTDV 406
Score = 281 (104.0 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 66/176 (37%), Positives = 104/176 (59%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL KL +G VLIFSQ ++L+++++ +GY++ R+DG T +R +
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 547
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
+ F + + IF+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 548 IEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 607
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRE-LLSLPKQG 925
V V+RL+T TVEE+I + K L + I S + +E +L + + G
Sbjct: 608 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHG 663
Score = 96 (38.9 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 53/205 (25%), Positives = 86/205 (41%)
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS--LLEIPSAHRIIISGTPIQNNLK 571
++FI DE + WD + +IK S + L I AHRI + + ++
Sbjct: 274 AAFIRDEMMPGE--WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 331
Query: 572 ELWALFNFCCPEL-LGDNK---WFKEKYELP-ILRGNDKHA--LDREKRIGSA-VAKELR 623
E + L +N W + LP + D D + +G + + L
Sbjct: 332 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLH 391
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VL-S 681
++P+ LRR+K +V +L K E+ ++L L+ QR+ Y L +I VL S
Sbjct: 392 AVLKPFLLRRIKTDV--------EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNS 443
Query: 682 AFDGSPLAALTIL---KKICDHPLL 703
A + L IL +K C+HP L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYL 468
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 314 (115.6 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 64/179 (35%), Positives = 107/179 (59%)
Query: 744 FQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT 803
F + + S K +L +L++ G +LIFSQ KML++I + + + +DG T
Sbjct: 887 FVDDYKGSSAKFEQLLDILEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNT 946
Query: 804 KASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 863
+ +RV++ N F EG+ +FL++ + GG GL LT AD VI+ D WNP+ + Q+ DRAY
Sbjct: 947 PSQERVELCNRFNEGE-GDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAY 1005
Query: 864 RIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH-KEQIRYFSQQDLRELLSL 921
R+GQK V V +L+ GT+EEK++ Q K L E +E++ +++++R++L +
Sbjct: 1006 RMGQKNTVQVIKLVAHGTIEEKMHELQESKKNLIAEVIEPGEEKLSSITEEEIRDILMI 1064
Score = 254 (94.5 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 82/274 (29%), Positives = 138/274 (50%)
Query: 360 NVLDDYSDDSVLEDEGSITLSGPRST-YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGI 418
NVL D+SV + SI P+ + +P + ++ +Q G W+ +L GGI
Sbjct: 580 NVLS--LDESVQDLVESI--QNPKKLKFTVPQTLRAVMREYQVYGFEWMKTLAYYRFGGI 635
Query: 419 LGDDMGLGKTMQICGFLAGLFHSRLIKRA--LVVAPKTLLSHWIKELTAVGLSAKIREYF 476
L DDMGLGKT+Q ++ + K+ LVV+P +L+ +W+ EL + IR
Sbjct: 636 LADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLVYNWLSELKK--FAPHIR--- 690
Query: 477 GTCVKTRQYELQYVLQDKG---VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 533
Q E + +L+D V++T+Y ++R + +S F + + L
Sbjct: 691 AVIADGNQAERRKILKDVAEFDVVITSYPLLRRDIRSY-ARPFHT------------LFL 737
Query: 534 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKE 593
DE KNP+TQ A+++ I + +R ++GTP++N+L+ELW++F+ PELL K F +
Sbjct: 738 DEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKEFGD 797
Query: 594 KYELPILRGNDKHALDREKRIGSAVAKELRERIQ 627
I + L +R+ V KEL ++I+
Sbjct: 798 LRREDIAKRVKPFVL---RRLKEDVLKELPDKIE 828
Score = 151 (58.2 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 54/177 (30%), Positives = 86/177 (48%)
Query: 340 VNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRST-YMLPGKIGNMLFP 398
VN P R K H G NVL D+SV + SI P+ + +P + ++
Sbjct: 562 VNVPLIRSVKWMNGLHEG--NVLS--LDESVQDLVESI--QNPKKLKFTVPQTLRAVMRE 615
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA--LVVAPKTLL 456
+Q G W+ +L GGIL DDMGLGKT+Q ++ + K+ LVV+P +L+
Sbjct: 616 YQVYGFEWMKTLAYYRFGGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLV 675
Query: 457 SHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTTYDIVRNNSKS 510
+W+ EL + IR Q E + +L+D V++T+Y ++R + +S
Sbjct: 676 YNWLSELKK--FAPHIR---AVIADGNQAERRKILKDVAEFDVVITSYPLLRRDIRS 727
Score = 90 (36.7 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 34/106 (32%), Positives = 48/106 (45%)
Query: 608 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQR 667
L K G +++ +R++P+ LRRLK +V E L K E + L Q+
Sbjct: 789 LPGRKEFGDLRREDIAKRVKPFVLRRLKEDVLKE--------LPDKIEHLQSSELLPDQK 840
Query: 668 QLYEAFLNS--EIVLSAFDGSPL--------AALTILKKICDHPLL 703
+LY A+L E L D L A LT L++IC HP L
Sbjct: 841 RLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPAL 886
Score = 48 (22.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 570 LKELWALFNFCC-PELLGDN-KWFKEKYE--LPIL---RGNDKHAL--DREKRIGSAVAK 620
L L L CC P L D+ K K+E L IL R K L + ++ S + +
Sbjct: 871 LAGLTRLRQICCHPALFVDDYKGSSAKFEQLLDILEECRSTGKRILIFSQFTKMLSIIGR 930
Query: 621 ELRERIQPYF 630
EL + PYF
Sbjct: 931 ELNRQAIPYF 940
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 281 (104.0 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 73/203 (35%), Positives = 110/203 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL GH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 955 SGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1014
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1015 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1074
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFS-QQDLRELLSLPKQGFDVS 929
V++YR +T +VEE+I Q+ K + T + + S +EL + K G +
Sbjct: 1075 VMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTE-E 1131
Query: 930 LTQQQLHEEHGDQHNMDESLEAH 952
L + + D ++D+S H
Sbjct: 1132 LFKDDVEGGVSDNKDVDDSSVIH 1154
Score = 238 (88.8 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 76/259 (29%), Positives = 127/259 (49%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA--LVV 450
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ + + LV
Sbjct: 628 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVS 687
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNS 508
AP + + +W +E + Y G ++R E ++ +D + + + R
Sbjct: 688 APLSTIINWEREFEMWAPDFYVVTYTGD-KESRSVIRENEFSFEDNAIR-SGKKVFRMKK 745
Query: 509 KS-------LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
++ L I+ D+A W +++DE H +KN ++ + L ++++
Sbjct: 746 EAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLL 805
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K
Sbjct: 806 LTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----K 850
Query: 621 ELRERIQPYFLRRLKNEVF 639
+L + + P+ LRRLK +VF
Sbjct: 851 KLHDLLGPHMLRRLKADVF 869
Score = 109 (43.4 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 850 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 901
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 902 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 937
Score = 58 (25.5 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 801 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 854
Score = 48 (22.0 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 268 DGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGE 310
D +E+ SE EG ++ + KK ++++K ++ D E
Sbjct: 8 DNDEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKDEE 50
Score = 44 (20.5 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 715 GMDSMLNP-EDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNV 772
G D + P ED + EK +K++ + D+ + F+ ++ D E H +
Sbjct: 1580 GEDKEVKPAEDTKVEEKEQSETQQNGDKEEEDGKKDDRNVNFRFMFNIADGGFTELHTL 1638
Score = 39 (18.8 bits), Expect = 3.8e-44, Sum P(4) = 3.8e-44
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGD 282
E S D+ +E+ E+E + + + + + + + + ++D G L E +
Sbjct: 5 EISDNDEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKDEEEDDDDGGLKEPKSS 64
Query: 283 EHL 285
L
Sbjct: 65 AQL 67
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 285 (105.4 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 66/164 (40%), Positives = 102/164 (62%)
Query: 734 HIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----EGHNVLIFSQTRKMLNLIQESI 789
++ D E + F E D+++ + S L LLDKL+ GH VL+FSQ +ML+++Q+ +
Sbjct: 326 YLFDGVEPEPF-EVGDHLT-EASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYM 383
Query: 790 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 849
+GY + R+DG+ + +R + +F + + +FLL+++ GG+G+ LT AD VI VD
Sbjct: 384 DYRGYSYERVDGSVRGEERHLAIKNFGQQPIF-VFLLSTRAGGVGMNLTAADTVIFVDSD 442
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
+NP D Q+ RA+RIGQ K V V RL+ TVEE +YRK K
Sbjct: 443 FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK 486
Score = 280 (103.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 94/261 (36%), Positives = 137/261 (52%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICG---FLAGLFHSRLIK 445
G G L +Q EG+ WL HCQ G ILGD+MGLGKT Q +LAG +
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQRFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDE--G 96
Query: 446 RALVVAPKTLLSHWIKELT--AVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTT 500
L++ P ++LS+W +E+ A GLS Y G K + LQ L+ + VLLTT
Sbjct: 97 PFLILCPLSVLSNWKEEMQRFAPGLSCVT--YAGD--KEERACLQQDLKQESRFHVLLTT 152
Query: 501 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
Y+I L+ +SF+ W +++DE H +KN S+ K+L E ++
Sbjct: 153 YEIC------LKDASFLKSFP------WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLL 200
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTPIQN+L+EL++L +F P+L KE+ I R D +++E S A
Sbjct: 201 LTGTPIQNSLQELYSLLSFVEPDLFS-----KEEVGDFIQRYQD---IEKE----SESAS 248
Query: 621 ELRERIQPYFLRRLKNEVFHE 641
EL + +QP+ LRR+K EV E
Sbjct: 249 ELHKLLQPFLLRRVKAEVATE 269
Score = 107 (42.7 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL-----PILRGN 603
S+L + AHR+ + + L E +F+ N +E Y L P L
Sbjct: 169 SVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNS-LQELYSLLSFVEPDLFSK 227
Query: 604 DKHA--LDREKRIG--SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
++ + R + I S A EL + +QP+ LRR+K EV E L KK E++++
Sbjct: 228 EEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATE--------LPKKTEVVIY 279
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI------LKKICDHPLL 703
+++ Q++ Y+A L + L AF+ + + L+K DHP L
Sbjct: 280 HGMSALQKKYYKAILMKD--LDAFENETAKKVKLQNILSQLRKCVDHPYL 327
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 279 (103.3 bits), Expect = 7.2e-45, Sum P(5) = 7.2e-45
Identities = 73/206 (35%), Positives = 113/206 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L L GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEA 1101
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1102 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1161
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQGF 926
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1162 VMIYRFVTRASVEERI--TQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL---KFGT 1216
Query: 927 DVSLTQQQLHEEHGDQHNMDESLEAH 952
+ L + + + GD ++S H
Sbjct: 1217 E-ELFKDEATDGGGDNKEGEDSSVIH 1241
Score = 235 (87.8 bits), Expect = 7.2e-45, Sum P(5) = 7.2e-45
Identities = 78/257 (30%), Positives = 123/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 775
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 776 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
S++ ++ + D AI W +I+DE H +KN ++ + L H+++++
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------D---IAKEDQI-----KKL 939
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 940 HDMLGPHMLRRLKADVF 956
Score = 105 (42.0 bits), Expect = 7.2e-45, Sum P(5) = 7.2e-45
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 937 KKLHDMLGPHMLRRLKADVFKN--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAME 1024
Score = 60 (26.2 bits), Expect = 7.2e-45, Sum P(5) = 7.2e-45
Identities = 27/115 (23%), Positives = 48/115 (41%)
Query: 217 SVADEYEESKGDDVAD-EEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGS 275
S+ + E++ D D E ET + K +PR D + ++ + L G+ G
Sbjct: 27 SLPPPHPENEDDPEEDLSEAETPKLKKKKKPKKPR--DPKIPKSKRQ-KKEL-GDSSGEG 82
Query: 276 LSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
VE DE + +++ K + K++ + +S EE DD+DD
Sbjct: 83 PEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 137
Score = 43 (20.2 bits), Expect = 7.2e-45, Sum P(5) = 7.2e-45
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 1017 PRDIKLNKKSSSPKNEAKLKESDIKER 1043
P D K + P+ E K++++++KER
Sbjct: 1605 PEDDKA--PAEPPEGEEKVEKAEVKER 1629
Score = 38 (18.4 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 261 ESFESNLDGEEDGGSLSEVEGD 282
E+ E N +GEE L EV GD
Sbjct: 415 EAKEDNSEGEE---ILEEVGGD 433
Score = 38 (18.4 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP-NFSDITDFDSPLQSKT 89
P K+K+ G K SS + D+ + + DD N ++D + S++
Sbjct: 286 PLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRS 335
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 323 (118.8 bits), Expect = 7.7e-45, Sum P(3) = 7.7e-45
Identities = 148/495 (29%), Positives = 220/495 (44%)
Query: 360 NVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGK---- 415
NVLD+ DDS+ R + +PG + L HQ +GL WL S K
Sbjct: 209 NVLDNVKDDSM-----------QRQSSFIPG-MHIRLLDHQVQGLTWLKSRETVSKSSAS 256
Query: 416 GGILGDDMGLGKTMQICGFLAGLFH-----SRLIKRALVVAPKTLLSHWIKEL-TAVGLS 469
GGIL DDMGLGKT+Q+ + L H IK LVVAP +L+ W E+ T L+
Sbjct: 257 GGILADDMGLGKTIQMIALI--LSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTKSKLT 314
Query: 470 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDI-----VRNNSKSLRGSSFISDEAGDD 524
A + Y G +Y+L V+ + V++TTY I V +N+ G S ++ +
Sbjct: 315 AIV--YHGAS----RYKLLKVIHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEK 368
Query: 525 DA------IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578
W +ILDE H IKN S++ A + + +R ++GTP+QNN+ EL++L
Sbjct: 369 KKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVK 428
Query: 579 FCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKN-- 636
F D +K++ LP+ +G + + V K LR + LRR K
Sbjct: 429 FLHINPFNDQSVWKDQISLPLCQGEE-----------NLVFKRLRMLLSVIMLRRTKTLL 477
Query: 637 EVFHEDDVTSSAT-LSKKNEMIVWLRLTSCQRQLYEAFL-NSEIVLSAFDGSP------- 687
E D T A LSK+ V + +R Y N E +S F S
Sbjct: 478 EANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYT 537
Query: 688 --LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQ 745
L L L++ C+HP L + +DV D +++ + AA KLA DV + +
Sbjct: 538 NILCLLLRLRQACNHPQSLNFQFEQDV-DAFNAL---DGAANTNKLASD-QDVDDLANLL 592
Query: 746 EQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA 805
E + S K SF + +L P+ H +R L + I K L ++K
Sbjct: 593 ETVEIGSRKKSFCTICMAELPPDFHEKKCKDCSRNFKEL-DKGIQDPNDKTLY--KSSKI 649
Query: 806 SDRVKIVN-DFQEGD 819
+ +KI++ D QE D
Sbjct: 650 REILKILSLDEQEED 664
Score = 232 (86.7 bits), Expect = 7.7e-45, Sum P(3) = 7.7e-45
Identities = 55/150 (36%), Positives = 83/150 (55%)
Query: 773 LIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 832
+IFSQ L++I + G F+R DG R K ++ + + L + + G
Sbjct: 674 IIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGA 733
Query: 833 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIF 892
LGL LT A RVI+ D WNP+ + Q++DR +RIGQ++DV+VY+L+ T+EEKI Q
Sbjct: 734 LGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNL 793
Query: 893 KGGLFKTAT-EHKEQIRYFSQQDLRELLSL 921
K L K A + K+ + + L +LL L
Sbjct: 794 KRDLAKQALGDGKKSVFTSKKLTLNDLLFL 823
Score = 53 (23.7 bits), Expect = 7.7e-45, Sum P(3) = 7.7e-45
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 253 DNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQK-KNEPKRVHDGER 311
++ + A SF N G G +E L + + Q K KN+ K H
Sbjct: 9 ESGVKKANNSFLQNF-GVNTAGKENESTSLPRLPKSEDESIPKQSIKSKNKKKTQH---- 63
Query: 312 FNGQSFVSGGREEYDDEDDCVIVSGKLVVNRP 343
F +F S R+E D + VIVS + ++P
Sbjct: 64 FLSDAFESLKRQEIDTNEKEVIVSAP-ITSKP 94
Score = 42 (19.8 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1018 RDIK-LNKKSSSPKNEAKLKESDIKERIKRLS 1048
R+ K L+K P ++ K S I+E +K LS
Sbjct: 626 RNFKELDKGIQDPNDKTLYKSSKIREILKILS 657
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 307 (113.1 bits), Expect = 8.2e-45, Sum P(2) = 8.2e-45
Identities = 101/324 (31%), Positives = 165/324 (50%)
Query: 396 LFPHQREGLRWLWS--LHCQGKGG---ILGDDMGLGKTMQ----ICGFLAGLFH---SRL 443
L+ HQREG+ +L+ L +GK G IL D+MGLGKT+Q + L ++ S
Sbjct: 205 LYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSST 264
Query: 444 IKRALVVAPKTLLSHWIKEL-TAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
I A+VVAP TLL +W E +G +I Y C + + Q +K TY
Sbjct: 265 INNAMVVAPVTLLKNWENEFYNWLG-HERIHVYIARCAE----DFQEFTSNK-----TYS 314
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
I+ +++ +++ + D D +I DE H +K+ S+Q +L ++ + R++++
Sbjct: 315 IIITGYETV--CTYLRNYGCGIDI--DLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLT 370
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QN+L E +++ NF P LG FK +YE PILR +A R+ +G+A + L
Sbjct: 371 GTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRL 430
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA 682
E + LRR N + + L + +++++++ T Q +Y L+ S+
Sbjct: 431 FEFTSNFTLRRKANIL--------AKHLPPRTDIVLFIKPTHQQENVYGHVLDG--FKSS 480
Query: 683 FD--GSPLAALTILKKICDHPLLL 704
D G L LT L KIC+ +LL
Sbjct: 481 VDQKGYYLKILTRLSKICNSTILL 504
Score = 254 (94.5 bits), Expect = 8.2e-45, Sum P(2) = 8.2e-45
Identities = 63/217 (29%), Positives = 117/217 (53%)
Query: 712 VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG-H 770
+L + + N EK ++ +K F++++ +S IL+ L K G
Sbjct: 490 ILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQ 549
Query: 771 NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTS 828
+I SQ ++ L LI+ + +F ++ G+T S+R IV++F + LL+S
Sbjct: 550 KAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSS 609
Query: 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
+ GG GL LT + R+I+ +P+WNP+ D Q++ R YR GQK+ V +Y ++ G ++E+I+
Sbjct: 610 KAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFI 669
Query: 889 KQIFKGGLFKTA--TEHKEQIRYFSQQDLRELLSLPK 923
+Q K GL + ++ ++ +F+ +D++ L S K
Sbjct: 670 RQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSK 706
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 310 (114.2 bits), Expect = 8.4e-45, Sum P(2) = 8.4e-45
Identities = 107/330 (32%), Positives = 156/330 (47%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILG-DDMGLGKTMQICGFLAGL-FHSRLIKRALVVAPK 453
L PHQ EG+ WL + G +L D MGLGKT+Q FL+ L F L LV+ P
Sbjct: 51 LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110
Query: 454 TLLSHWIKELTAVGLSAKIREYFGT--C-VKTRQYELQYVLQD-KG------VLLTTYDI 503
++ W+ E+ + ++ Y G C + R+ +V + KG VLLTTYDI
Sbjct: 111 SVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDI 170
Query: 504 VRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE---IPSAHRII 560
+L F+S W Y I+DE +KNP++ LLE IP R++
Sbjct: 171 ------ALVDQDFLSQIP------WQYAIIDEAQRLKNPNSVLYNVLLEQFLIP--RRLL 216
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
I+GTPIQNNL ELWAL +FC P + G F ++ G+ LD K
Sbjct: 217 ITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKET---GDGLSGLDVSN--DKETYK 271
Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-- 678
L+ + + LRR K+ + ++ L E+ V + L S Q+++Y + L E+
Sbjct: 272 SLKFILGAFMLRRTKSLLIESGNLV----LPPLTELTVMVPLVSLQKKIYTSILRKELPG 327
Query: 679 VLSAFDG----SPLAALTI-LKKICDHPLL 703
+L G + L + I L+K C HP L
Sbjct: 328 LLELSSGGSNHTSLQNIVIQLRKACSHPYL 357
Score = 252 (93.8 bits), Expect = 8.4e-45, Sum P(2) = 8.4e-45
Identities = 70/221 (31%), Positives = 112/221 (50%)
Query: 740 EKDDFQE-QH-DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
E + F+E +H S K+ + LL +L GH VL+FSQ L+++Q+ + + Y +
Sbjct: 362 EPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYE 421
Query: 798 RIDGTTKASDRVKIVNDFQ-----------EGDVAPIFLLTSQVGGLGLTLTKADRVIVV 846
R+DG+ +A +R + +F +G A +F+++++ GG+GL L AD VI
Sbjct: 422 RLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFY 481
Query: 847 DPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 906
+ WNP D Q++ RA+RIGQ V+ L+T +VEE I R+ K L +
Sbjct: 482 EQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNME 541
Query: 907 IRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDE 947
+ DLR L+ Q FD +++H E D M E
Sbjct: 542 EKEEDGGDLRSLV-FGLQRFD----PEEIHNEESDNLKMVE 577
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 289 (106.8 bits), Expect = 9.2e-45, Sum P(2) = 9.2e-45
Identities = 88/300 (29%), Positives = 146/300 (48%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML-------PGKI-GNMLFPHQ 400
++ K L++V DY ++E LS R T + P + G L +Q
Sbjct: 133 RVKKDDKQSLISV-GDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQ 191
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHW 459
GL WL SL+ G GIL D+MGLGKT+Q L L H R I +V+ PK+ L +W
Sbjct: 192 IRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 251
Query: 460 IKELTAVGLSAKIREYFGTC-VKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFIS 518
+ E S ++ + G V+ + + + V +T+Y++V I
Sbjct: 252 MNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMV------------IK 299
Query: 519 DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578
+++ W Y+++DE H IKN ++ ++ + E S +R++++GTP+QNNL ELWAL N
Sbjct: 300 EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLN 359
Query: 579 FCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
F P++ F ++ K+ L +K + + L ++P+ LRR+K +V
Sbjct: 360 FLLPDVFNSADDFDSWFDT-------KNCLGDQKLV-----ERLHAVLKPFLLRRIKTDV 407
Score = 276 (102.2 bits), Expect = 9.2e-45, Sum P(2) = 9.2e-45
Identities = 58/143 (40%), Positives = 93/143 (65%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL ++ +G VLIFSQ ++L+++++ +GY++ R+DG T +R +
Sbjct: 489 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEA 548
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F + + IF+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 549 IDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 608
Query: 871 VVVYRLMTCGTVEEKIYRKQIFK 893
V V+RL+T TVEE+I + K
Sbjct: 609 VRVFRLITDNTVEERIVERAEIK 631
Score = 96 (38.9 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 53/210 (25%), Positives = 90/210 (42%)
Query: 509 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS--LLEIPSAHRIIISGTPI 566
K +R ++FI DE + WD + +IK S + L I AHRI + +
Sbjct: 271 KDVR-AAFIRDEMMPGE--WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKL 327
Query: 567 QNNLKELWALFNFCCPEL-LGDNK---WFKEKYELP-ILRGNDKHA--LDREKRIGSA-V 618
++E + L +N W + LP + D D + +G +
Sbjct: 328 SEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKL 387
Query: 619 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
+ L ++P+ LRR+K +V +L K E+ ++L L+ QR+ Y L +I
Sbjct: 388 VERLHAVLKPFLLRRIKTDV--------EKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 439
Query: 679 -VLSA---FDGSPLAALTI-LKKICDHPLL 703
VL++ D L + + L+K C+HP L
Sbjct: 440 DVLNSSGKMDKMRLLNILMQLRKCCNHPYL 469
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 280 (103.6 bits), Expect = 9.9e-45, Sum P(4) = 9.9e-45
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1055 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1114
Query: 812 VNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1115 IDRFNAHGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1174
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1175 VMIYRFVTRASVEERI 1190
Score = 235 (87.8 bits), Expect = 9.9e-45, Sum P(4) = 9.9e-45
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 729 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 788
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 789 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 847
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 848 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 907
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 908 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 952
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 953 HDLLGPHMLRRLKADVF 969
Score = 107 (42.7 bits), Expect = 9.9e-45, Sum P(4) = 9.9e-45
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 950 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 1001
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 1002 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 1037
Score = 64 (27.6 bits), Expect = 4.9e-21, Sum P(3) = 4.9e-21
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 901 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 954
Score = 53 (23.7 bits), Expect = 9.9e-45, Sum P(4) = 9.9e-45
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 47 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 104
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+K+ + KR GE GQ V
Sbjct: 105 EKKEKKTKRRKKGEGEGGQKQV 126
Score = 51 (23.0 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 43 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 85
Score = 42 (19.8 bits), Expect = 1.4e-43, Sum P(4) = 1.4e-43
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQETENV 240
K+ V + ++YEE +G++ ++E+E +++
Sbjct: 421 KEGVQWEAKEEEEDYEE-EGEEEGEKEEEDDHM 452
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 284 (105.0 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 86/300 (28%), Positives = 144/300 (48%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML-------PGKI-GNMLFPHQ 400
++ K L++ DY ++E LS R T + P + G L +Q
Sbjct: 132 RIKKDDKQSLISA-GDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQ 190
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHW 459
GL WL SL+ G GIL D+MGLGKT+Q L L H R I +V+ PK+ L +W
Sbjct: 191 IRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 250
Query: 460 IKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFIS 518
+ E S ++ + G + ++ + V +T+Y++V I
Sbjct: 251 MNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV------------IK 298
Query: 519 DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN 578
+++ W Y+++DE H IKN ++ ++ + E S +R++++GTP+QNNL ELWAL N
Sbjct: 299 EKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLN 358
Query: 579 FCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEV 638
F P++ F ++ K+ L +K + + L ++P+ LRR+K +V
Sbjct: 359 FLLPDVFNSADDFDSWFDT-------KNCLGDQKLV-----ERLHAVLKPFLLRRIKTDV 406
Score = 281 (104.0 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 66/176 (37%), Positives = 104/176 (59%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL KL +G VLIFSQ ++L+++++ +GY++ R+DG T +R +
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 547
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
+ F + + IF+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 548 IEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 607
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRE-LLSLPKQG 925
V V+RL+T TVEE+I + K L + I S + +E +L + + G
Sbjct: 608 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHG 663
Score = 96 (38.9 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 53/205 (25%), Positives = 86/205 (41%)
Query: 514 SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS--LLEIPSAHRIIISGTPIQNNLK 571
++FI DE + WD + +IK S + L I AHRI + + ++
Sbjct: 274 AAFIRDEMMPGE--WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 331
Query: 572 ELWALFNFCCPEL-LGDNK---WFKEKYELP-ILRGNDKHA--LDREKRIGSA-VAKELR 623
E + L +N W + LP + D D + +G + + L
Sbjct: 332 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLH 391
Query: 624 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VL-S 681
++P+ LRR+K +V +L K E+ ++L L+ QR+ Y L +I VL S
Sbjct: 392 AVLKPFLLRRIKTDV--------EKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNS 443
Query: 682 AFDGSPLAALTIL---KKICDHPLL 703
A + L IL +K C+HP L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYL 468
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 499 (180.7 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 131/401 (32%), Positives = 216/401 (53%)
Query: 531 MILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKW 590
+I DEGH +KN ++L+ + + R+++SGTPIQN+L E ++L NF PE+LG
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAV 353
Query: 591 FKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATL 650
FK +E ILRG + + D E++ A +EL + +RR N++ + L
Sbjct: 354 FKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRT-NQIL-------TKYL 405
Query: 651 SKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG-------SPLAALTILKKICDHP-L 702
K EM++ +LTS Q +LY FL S+ V + + LA +T LKKIC HP L
Sbjct: 406 PVKFEMVICAKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNL 465
Query: 703 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL 762
+ K A D G ++ N L ++ KD + +S K + +L
Sbjct: 466 IYEKITARD--KGFENSQN----VLP-------SNYNAKD----LNPELSGKFMLLDFML 508
Query: 763 DKLIPEGHN-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVA 821
+ +G++ V++ S + L+L ++ + Y F+R+DGT R K+V+ F + +
Sbjct: 509 AAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESD 568
Query: 822 P-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+F+L+S+ GG GL L A+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G
Sbjct: 569 SFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASG 628
Query: 881 TVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLS 920
++EEKI ++Q K L T ++ E ++F++ DL++L +
Sbjct: 629 SIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 354 (129.7 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 113/344 (32%), Positives = 171/344 (49%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGG-----ILGDDMGLGKTMQICGFLAGLFHSR---- 442
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210
Query: 443 -LIKRALVVAPKTLLSHWIKELTA--VGLSAKIREYFGTCVKT----RQYELQYVLQDKG 495
I +A+VV+P +L+ +W KE T G + GT T Q+ +
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTP 270
Query: 496 VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPS 555
VLL +Y+ R ++ L E G +I DEGH +KN ++L+ + +
Sbjct: 271 VLLISYETFRIYAEIL-----CKYEVG-------MVICDEGHRLKNSDNLTYQALMGLKT 318
Query: 556 AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIG 615
R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D E++
Sbjct: 319 KRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQRA 378
Query: 616 SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN 675
A +EL + +RR N++ + L K EM++ +LTS Q +LY FL
Sbjct: 379 IAKTQELIGLVDQCIIRRT-NQIL-------TKYLPVKFEMVICAKLTSIQLELYTNFLK 430
Query: 676 SEIVLSAFDG-------SPLAALTILKKICDHP-LLLTKRAAED 711
S+ V + + LA +T LKKIC HP L+ K A D
Sbjct: 431 SDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKITARD 474
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 244 (91.0 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL EGH VLIFSQ KML+L+++ + +GYK+ RIDG R +
Sbjct: 997 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA 1056
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1057 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 242 (90.2 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 75/256 (29%), Positives = 123/256 (48%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 671 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSA 730
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFG-----TCVKTRQYELQ--YVLQDKGVLLTTYDIV 504
P + + +W +E + Y G + ++ ++ + + K V ++
Sbjct: 731 PLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQ 790
Query: 505 RNNSKSLRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 563
L I+ D+A W +++DE H +KN ++ + L ++++++G
Sbjct: 791 IKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTG 850
Query: 564 TPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 623
TP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 851 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKLH 895
Query: 624 ERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 896 DLLGPHMLRRLKADVF 911
Score = 109 (43.4 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 892 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSQMQKKYYKFILTRNFE 943
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 944 ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE 979
Score = 70 (29.7 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 27/96 (28%), Positives = 42/96 (43%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLD----GEEDGGSLSE 278
EE G D+ E VG+ K+ + +N R+ E + D E+D SE
Sbjct: 2 EEDGGLGGFDDYFPEEPVGLPKKKKSKKLKENRSKGKRKKKEGSNDELSENEDDLEEKSE 61
Query: 279 VEGDEHLSRVHETKK-HHQRQKKNEPKRVHDGERFN 313
EG ++ + KK +++KK + KR D E N
Sbjct: 62 SEGSDYSPNKKKKKKLKDKKEKKAKRKRKDDDEDDN 97
Score = 58 (25.5 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
D+ LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 843 DYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 896
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 279 (103.3 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1057 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1116
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1117 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1176
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1177 VMIYRFVTRASVEERI 1192
Score = 235 (87.8 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 731 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 790
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 791 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 849
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 850 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 909
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 910 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 954
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 955 HDLLGPHMLRRLKADVF 971
Score = 107 (42.7 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 952 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 1003
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 1004 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 1039
Score = 64 (27.6 bits), Expect = 6.3e-21, Sum P(3) = 6.3e-21
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 903 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 956
Score = 53 (23.7 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 50 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 107
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+K+ + KR GE GQ V
Sbjct: 108 EKKEKKTKRRKKGEGDGGQKQV 129
Score = 51 (23.0 bits), Expect = 2.0e-44, Sum P(4) = 2.0e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 46 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 88
Score = 42 (19.8 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQETENV 240
K+ V + +EYEE G++ ++E+E +++
Sbjct: 424 KEGVQWEAKEEEEEYEE--GEEEGEKEEEDDHM 454
Score = 41 (19.5 bits), Expect = 2.2e-43, Sum P(4) = 2.2e-43
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 259 ARESFESNLDGEEDGGSLSEVEGDEHL 285
A+E E +GEE+G + E D+H+
Sbjct: 431 AKEEEEEYEEGEEEG---EKEEEDDHM 454
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 279 (103.3 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1059 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1118
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1119 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1178
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1179 VMIYRFVTRASVEERI 1194
Score = 235 (87.8 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 733 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 792
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 793 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 851
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 956
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 957 HDLLGPHMLRRLKADVF 973
Score = 107 (42.7 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 954 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 1006 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 1041
Score = 64 (27.6 bits), Expect = 6.3e-21, Sum P(3) = 6.3e-21
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 905 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 958
Score = 53 (23.7 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 51 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 108
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+K+ + KR GE GQ V
Sbjct: 109 EKKEKKTKRRKKGEGDGGQKQV 130
Score = 51 (23.0 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 47 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 89
Score = 45 (20.9 bits), Expect = 8.6e-44, Sum P(4) = 8.6e-44
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 208 KDNVGGVVESVADEYEESKGDDVADEEQETENV 240
K+ V + D+YEE +G++ ++E+E +++
Sbjct: 425 KEGVQWEAKEEDDDYEE-EGEEEGEKEEEDDHM 456
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 279 (103.3 bits), Expect = 1.4e-44, Sum P(5) = 1.4e-44
Identities = 73/206 (35%), Positives = 113/206 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L L GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEA 1101
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1102 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1161
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQGF 926
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1162 VMIYRFVTRASVEERI--TQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL---KFGT 1216
Query: 927 DVSLTQQQLHEEHGDQHNMDESLEAH 952
+ L + + + GD ++S H
Sbjct: 1217 E-ELFKDEATDGGGDNKEGEDSSVIH 1241
Score = 235 (87.8 bits), Expect = 1.4e-44, Sum P(5) = 1.4e-44
Identities = 78/257 (30%), Positives = 123/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 775
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 776 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
S++ ++ + D AI W +I+DE H +KN ++ + L H+++++
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------D---IAKEDQI-----KKL 939
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 940 HDMLGPHMLRRLKADVF 956
Score = 105 (42.0 bits), Expect = 1.4e-44, Sum P(5) = 1.4e-44
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 937 KKLHDMLGPHMLRRLKADVFKN--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAME 1024
Score = 59 (25.8 bits), Expect = 1.4e-44, Sum P(5) = 1.4e-44
Identities = 26/110 (23%), Positives = 48/110 (43%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVE 280
E EE +D++ E ET + K +PR D + ++ + L G+ G VE
Sbjct: 34 ENEEDPEEDLS--ETETPKLKKKKKPKKPR--DPKIPKSKRQ-KKEL-GDSSGEGPEFVE 87
Query: 281 GDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
+E ++ +++ K + K++ + +S EE DD+DD
Sbjct: 88 EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 137
Score = 44 (20.5 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 261 ESFESNLDGEED----GGSLSEVEGDEHL 285
E+ E N +GEE GG L E E D H+
Sbjct: 415 EAKEDNSEGEEILEEVGGDLEE-EDDHHM 442
Score = 41 (19.5 bits), Expect = 1.4e-44, Sum P(5) = 1.4e-44
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 1029 PKNEAKLKESDIKER 1043
P+ E K++++++KER
Sbjct: 1605 PEGEEKVEKAEVKER 1619
Score = 38 (18.4 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP-NFSDITDFDSPLQSKT 89
P K+K+ G K SS + D+ + + DD N ++D + S++
Sbjct: 286 PLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRS 335
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 290 (107.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 94/263 (35%), Positives = 138/263 (52%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICG---FLAGLFHSRLIK 445
G G L +Q EG+ WL HCQ G ILGD+MGLGKT Q +LAG +
Sbjct: 42 GLTGIRLRSYQLEGVNWLARCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDE--G 98
Query: 446 RALVVAPKTLLSHWIKELT--AVGLSAKIREYFGTCVKTRQYELQYVLQDKG---VLLTT 500
L++ P ++LS+W +E+ A GLS + Y G K + LQ L+ + VLLTT
Sbjct: 99 PFLILCPLSVLSNWTEEMERFAPGLSCVM--YAGD--KEERARLQQDLKQESRFHVLLTT 154
Query: 501 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
Y+I L+ SSF+ W +++DE H +KN ++ K+LLE ++
Sbjct: 155 YEIC------LKDSSFLKSFP------WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLL 202
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKW--FKEKYELPILRGNDKHALDREKRIGSAV 618
++GTPIQN+L+EL++L +F P+L + F ++Y+ D EK SA
Sbjct: 203 LTGTPIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRYQ------------DIEKESDSA- 249
Query: 619 AKELRERIQPYFLRRLKNEVFHE 641
EL + +QP+ LRR+K EV E
Sbjct: 250 -SELHKLLQPFLLRRVKAEVATE 271
Score = 271 (100.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 58/135 (42%), Positives = 86/135 (63%)
Query: 759 LSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG 818
LS L + GH VL+FSQ +ML+++Q+ + +GY + R+DG+ + +R + +F +
Sbjct: 356 LSFL--FLARGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ 413
Query: 819 DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMT 878
V +FLL+++ GG+G+ LT AD VI VD +NP D Q+ RA+RIGQ K V V RL+
Sbjct: 414 PVF-VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIG 472
Query: 879 CGTVEEKIYRKQIFK 893
TVEE +YRK K
Sbjct: 473 RDTVEEIVYRKAASK 487
Score = 102 (41.0 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 36/102 (35%), Positives = 55/102 (53%)
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 668
D EK SA EL + +QP+ LRR+K EV E L KK E++++ +++ Q++
Sbjct: 241 DIEKESDSA--SELHKLLQPFLLRRVKAEVATE--------LPKKTEVVLYHGMSALQKK 290
Query: 669 LYEAFLNSEIVLSAFDGSPLA-------ALTILKKICDHPLL 703
Y+A L + L AF+ S +A L+ L+K DHP L
Sbjct: 291 YYKAILMKD--LDAFE-SEMAKKVKLQNVLSQLRKCVDHPYL 329
Score = 37 (18.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 736 ADVAEKDDFQEQHDNISCKISF 757
++ +E +D ++Q D S ++ +
Sbjct: 690 SEESEPEDLEDQEDESSAQLDY 711
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 279 (103.3 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 73/206 (35%), Positives = 113/206 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L L GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEA 1101
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1102 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1161
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQGF 926
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1162 VMIYRFVTRASVEERI--TQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL---KFGT 1216
Query: 927 DVSLTQQQLHEEHGDQHNMDESLEAH 952
+ L + + + GD ++S H
Sbjct: 1217 E-ELFKDEATDGGGDNKEGEDSSVIH 1241
Score = 235 (87.8 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 78/257 (30%), Positives = 123/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 716 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 775
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 776 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 834
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
S++ ++ + D AI W +I+DE H +KN ++ + L H+++++
Sbjct: 835 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 894
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 895 GTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------D---IAKEDQI-----KKL 939
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 940 HDMLGPHMLRRLKADVF 956
Score = 105 (42.0 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 937 KKLHDMLGPHMLRRLKADVFKN--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 989 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAME 1024
Score = 56 (24.8 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 25/110 (22%), Positives = 48/110 (43%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVE 280
E EE +D++ E ET + K +PR D + ++ + L G+ G VE
Sbjct: 34 ENEEDPDEDLS--EAETPKLKKKKKPKKPR--DPKIPKSKRQ-KKEL-GDSSGEGPEFVE 87
Query: 281 GDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
+E ++ +++ K + K++ + +S EE D++DD
Sbjct: 88 EEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDEDDD 137
Score = 43 (20.2 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 1017 PRDIKLNKKSSSPKNEAKLKESDIKER 1043
P D K + P+ E K++++++KER
Sbjct: 1605 PEDDKA--PAEPPEGEEKVEKAEVKER 1629
Score = 38 (18.4 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 261 ESFESNLDGEEDGGSLSEVEGD 282
E+ E N +GEE L EV GD
Sbjct: 415 EAKEDNSEGEE---ILEEVGGD 433
Score = 38 (18.4 bits), Expect = 4.7e-42, Sum P(6) = 4.7e-42
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP-NFSDITDFDSPLQSKT 89
P K+K+ G K SS + D+ + + DD N ++D + S++
Sbjct: 286 PLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRS 335
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 284 (105.0 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 95/260 (36%), Positives = 138/260 (53%)
Query: 390 GKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA- 447
G G L +Q EG+ WL HCQ G ILGD+MGLGKT Q L L RL
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQCFHCQN-GCILGDEMGLGKTCQTIALLIYLV-GRLNDEGP 91
Query: 448 -LVVAPKTLLSHWIKELT--AVGLSAKIREYFGTCVKTRQYELQYVL-QDKG--VLLTTY 501
LV+ P ++LS+W +E+ A GLS Y G K + LQ L Q+ G VLLTTY
Sbjct: 92 FLVLCPLSVLSNWKEEMERFAPGLSCVT--YTGD--KEERARLQQDLRQESGFHVLLTTY 147
Query: 502 DIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
+I L+ +SF+ + W + +DE H +KN S+ ++L E + R+++
Sbjct: 148 EIC------LKDASFLKSFS------WSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLL 195
Query: 562 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
+GTPIQN+L+EL++L P+L + +E+ E + R D +++E S A E
Sbjct: 196 TGTPIQNSLRELYSLLCVVEPDL-----FCREQVEDFVQRYQD---IEKE----SKSASE 243
Query: 622 LRERIQPYFLRRLKNEVFHE 641
L +QP+ LRR+K +V E
Sbjct: 244 LHRLLQPFLLRRVKAQVATE 263
Score = 276 (102.2 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 63/162 (38%), Positives = 95/162 (58%)
Query: 734 HIADVAEKDDFQ--EQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 791
++ D E + F+ E S K+ + LL L GH VL+FSQ ML+++Q+ +
Sbjct: 320 YLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDY 379
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 851
+GY + R+DG+ + +R + +F + +FLL+++ GG+G+ LT AD VI VD +N
Sbjct: 380 RGYSYERVDGSVRGEERHLAIKNFGNQPIF-VFLLSTRAGGVGMNLTAADTVIFVDSDFN 438
Query: 852 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
P D Q+ RA+RIGQ K V V RL+ TVEE +YRK K
Sbjct: 439 PQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASK 480
Score = 113 (44.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 50/170 (29%), Positives = 76/170 (44%)
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL-----PIL--R 601
S+L + AHR+ + + L E A+F N +E Y L P L R
Sbjct: 163 SVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNS-LRELYSLLCVVEPDLFCR 221
Query: 602 GNDKHALDREKRIG--SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
+ + R + I S A EL +QP+ LRR+K +V E L KK E++V+
Sbjct: 222 EQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAQVATE--------LPKKTEVVVY 273
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDGSPLAA------LTILKKICDHPLL 703
+++ Q++ Y+A L + L AF+ LT L+K DHP L
Sbjct: 274 HGMSALQKKYYKAILMKD--LDAFENETAKKVKLQNILTQLRKCVDHPYL 321
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 278 (102.9 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1169
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1170 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1229
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1230 VMIYRFVTRASVEERI 1245
Score = 235 (87.8 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 902
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 903 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 962
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 963 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 1007
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 1008 HDLLGPHMLRRLKADVF 1024
Score = 107 (42.7 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 1005 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 1056
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 1057 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 1092
Score = 64 (27.6 bits), Expect = 1.1e-20, Sum P(4) = 1.1e-20
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 956 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 1009
Score = 51 (23.0 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 98 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 140
Score = 48 (22.0 bits), Expect = 2.1e-44, Sum P(5) = 2.1e-44
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 25 RDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTEN--RAVVDDEPNFSDITDFD 82
RD + E V+ EE+ ++ + EG +V + D D+ E V+ P D
Sbjct: 2 RDEEEEEEEMVVSEEEEEEEE-EGDEEEEEVEAADEDDEEEDEEGVLGRGPGHDRGRDRH 60
Query: 83 SP 84
SP
Sbjct: 61 SP 62
Score = 44 (20.5 bits), Expect = 5.3e-44, Sum P(5) = 5.3e-44
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 220 DEYEESKGDDVADEEQETENVG 241
DE EE + V++EE+E E G
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEG 24
Score = 44 (20.5 bits), Expect = 1.1e-43, Sum P(5) = 1.1e-43
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 102 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 159
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+++ + KR GE G V
Sbjct: 160 EKREKKTKRRKRGEGDGGHKQV 181
Score = 43 (20.2 bits), Expect = 6.7e-44, Sum P(5) = 6.7e-44
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 216 ESVADEYEESKGDDVADEEQETE 238
E V E EE + ++ +EE+E E
Sbjct: 10 EMVVSEEEEEEEEEGDEEEEEVE 32
Score = 40 (19.1 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHL 285
E+ E D EE+G + E D+H+
Sbjct: 483 EAKEEEEDYEEEGEEGEKEEEDDHM 507
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(4) = 1.6e-23
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 557
EA D+D D +EG L + P R + PS H
Sbjct: 32 EAADED---DEEEDEEGVLGRGPGHDRGRDRHSPPSCH 66
Score = 38 (18.4 bits), Expect = 2.2e-43, Sum P(5) = 2.2e-43
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 232 DEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHET 291
DEE+E E + + + E + E+ + + + E++ G L G + H
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEEDEEGVLGRGPGHDRGRDRHSP 62
Query: 292 KKHH 295
H
Sbjct: 63 PSCH 66
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 278 (102.9 bits), Expect = 2.2e-44, Sum P(4) = 2.2e-44
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1015 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1074
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1075 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1134
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1135 VMIYRFVTRASVEERI 1150
Score = 235 (87.8 bits), Expect = 2.2e-44, Sum P(4) = 2.2e-44
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 689 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 748
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 749 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 807
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 808 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 867
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 868 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 912
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 913 HDLLGPHMLRRLKADVF 929
Score = 107 (42.7 bits), Expect = 2.2e-44, Sum P(4) = 2.2e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 910 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 961
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 962 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 997
Score = 64 (27.6 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 861 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 914
Score = 51 (23.0 bits), Expect = 2.2e-44, Sum P(4) = 2.2e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 3 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 45
Score = 44 (20.5 bits), Expect = 1.2e-43, Sum P(4) = 1.2e-43
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 7 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 64
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+++ + KR GE G V
Sbjct: 65 EKREKKTKRRKRGEGDGGHKQV 86
Score = 40 (19.1 bits), Expect = 3.0e-43, Sum P(4) = 3.0e-43
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHL 285
E+ E D EE+G + E D+H+
Sbjct: 388 EAKEEEEDYEEEGEEGEKEEEDDHM 412
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 278 (102.9 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 59/136 (43%), Positives = 86/136 (63%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L KL +GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEA 1169
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ
Sbjct: 1170 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 1229
Query: 871 VVVYRLMTCGTVEEKI 886
V++YR +T +VEE+I
Sbjct: 1230 VMIYRFVTRASVEERI 1245
Score = 235 (87.8 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 77/257 (29%), Positives = 122/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 784 GGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSA 843
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVL--LTTYDIVRNN 507
P + + +W +E + Y G +R E ++ +D + + + R
Sbjct: 844 PLSTIINWEREFQMWAPKFYVVTYTGD-KDSRAIIRENEFSFEDNAIKGGKKAFKMKREA 902
Query: 508 SKS----LRGSSFIS-DEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
L I+ D+A W +++DE H +KN ++ + L H+++++
Sbjct: 903 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 962
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 963 GTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------D---ISKEDQI-----KKL 1007
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 1008 HDLLGPHMLRRLKADVF 1024
Score = 107 (42.7 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 1005 KKLHDLLGPHMLRRLKADVFKN--------MPAKTELIVRVELSPMQKKYYKYILTRNFE 1056
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ S G+ ++ L I LKK C+HP L A E
Sbjct: 1057 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAME 1092
Score = 64 (27.6 bits), Expect = 1.2e-20, Sum P(4) = 1.2e-20
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 699 DHPLLLTKRAAEDVLDGMDSMLN---PEDAALAEKLAMHIADVAEKDDFQEQHD 749
DH LLLT ++ L+ + +LN PE E AD++++D ++ HD
Sbjct: 956 DHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHD 1009
Score = 51 (23.0 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 288 VHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
V + K+ ++QK+N+P + ++ + + R+EY ++ +
Sbjct: 98 VKKRKRGPKKQKENKPGKPRKRKKLDSEEEFGSERDEYREKSE 140
Score = 48 (22.0 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 25 RDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTEN--RAVVDDEPNFSDITDFD 82
RD + E V+ EE+ ++ + EG +V + D D+ E V+ P D
Sbjct: 2 RDEEEEEEEMVVSEEEEEEEE-EGDEEEEEVEAADEDDEEEDEEGVLGRGPGHDRGRDRH 60
Query: 83 SP 84
SP
Sbjct: 61 SP 62
Score = 44 (20.5 bits), Expect = 5.8e-44, Sum P(5) = 5.8e-44
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 220 DEYEESKGDDVADEEQETENVG 241
DE EE + V++EE+E E G
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEG 24
Score = 44 (20.5 bits), Expect = 1.2e-43, Sum P(5) = 1.2e-43
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 245 KRNEPRWVDNNLVSARESFESNLDGEEDGGS-------LSEVEGDEH-LSRVHETKKHHQ 296
KR + +N R+ LD EE+ GS SE G E+ + ++ H+
Sbjct: 102 KRGPKKQKENKPGKPRK--RKKLDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHR 159
Query: 297 RQKKNEPKRVHDGERFNGQSFV 318
+++ + KR GE G V
Sbjct: 160 EKREKKTKRRKRGEGDGGHKQV 181
Score = 43 (20.2 bits), Expect = 7.4e-44, Sum P(5) = 7.4e-44
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 216 ESVADEYEESKGDDVADEEQETE 238
E V E EE + ++ +EE+E E
Sbjct: 10 EMVVSEEEEEEEEEGDEEEEEVE 32
Score = 40 (19.1 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 261 ESFESNLDGEEDGGSLSEVEGDEHL 285
E+ E D EE+G + E D+H+
Sbjct: 483 EAKEEEEDYEEEGEEGEKEEEDDHM 507
Score = 40 (19.1 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 557
EA D+D D +EG L + P R + PS H
Sbjct: 32 EAADED---DEEEDEEGVLGRGPGHDRGRDRHSPPSCH 66
Score = 38 (18.4 bits), Expect = 2.4e-43, Sum P(5) = 2.4e-43
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 232 DEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHET 291
DEE+E E + + + E + E+ + + + E++ G L G + H
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEEDEEGVLGRGPGHDRGRDRHSP 62
Query: 292 KKHH 295
H
Sbjct: 63 PSCH 66
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 279 (103.3 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 73/206 (35%), Positives = 113/206 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L L GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1070 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEA 1129
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1130 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1189
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQGF 926
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1190 VMIYRFVTRASVEERI--TQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL---KFGT 1244
Query: 927 DVSLTQQQLHEEHGDQHNMDESLEAH 952
+ L + + + GD ++S H
Sbjct: 1245 E-ELFKDEATDGGGDNKEGEDSSVIH 1269
Score = 235 (87.8 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 78/257 (30%), Positives = 123/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 744 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 803
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 804 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 862
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
S++ ++ + D AI W +I+DE H +KN ++ + L H+++++
Sbjct: 863 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 922
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 923 GTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------D---IAKEDQI-----KKL 967
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 968 HDMLGPHMLRRLKADVF 984
Score = 105 (42.0 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 965 KKLHDMLGPHMLRRLKADVFKN--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 1016
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 1017 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAME 1052
Score = 55 (24.4 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 31/120 (25%), Positives = 50/120 (41%)
Query: 217 SVADEYEESKGDDVAD-EEQETENVGIGLKRNEPRWVDNNLV-SARESFESNLDGEEDGG 274
S+ + E++ D D E ET + K +PR D + S R+ E L + G
Sbjct: 48 SLPPPHPENEDDPEEDLSEAETPKLKKKKKPKKPR--DPKIPKSKRQKKERLLLCRQLGD 105
Query: 275 SLSE----VEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
S E VE DE + +++ K + K++ + +S EE DD+DD
Sbjct: 106 SSGEGPEFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 165
Score = 43 (20.2 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 1017 PRDIKLNKKSSSPKNEAKLKESDIKER 1043
P D K + P+ E K++++++KER
Sbjct: 1639 PEDDKA--PAEPPEGEEKVEKAEVKER 1663
Score = 38 (18.4 bits), Expect = 5.3e-42, Sum P(6) = 5.3e-42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 261 ESFESNLDGEEDGGSLSEVEGD 282
E+ E N +GEE L EV GD
Sbjct: 443 EAKEDNSEGEE---ILEEVGGD 461
Score = 38 (18.4 bits), Expect = 5.3e-42, Sum P(6) = 5.3e-42
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP-NFSDITDFDSPLQSKT 89
P K+K+ G K SS + D+ + + DD N ++D + S++
Sbjct: 314 PLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRS 363
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 282 (104.3 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 74/212 (34%), Positives = 121/212 (57%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + LL KL +G VL+FSQ ++L+++++ +GY++ R+DG T +R +
Sbjct: 409 SGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEA 468
Query: 812 VNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F + + IF+L+++ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK
Sbjct: 469 IDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 528
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR-ELLSLPKQG---- 925
V V+RL+T TVEE+I + K L + I S + + E+L + + G
Sbjct: 529 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMIRHGATHV 588
Query: 926 F---DVSLTQQQLHE--EHGDQHN--MDESLE 950
F D LT++ + E G++ M+E L+
Sbjct: 589 FASKDSELTEEDITTILERGEKKTAEMNERLQ 620
Score = 277 (102.6 bits), Expect = 3.4e-44, Sum P(2) = 3.4e-44
Identities = 87/301 (28%), Positives = 144/301 (47%)
Query: 349 KLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYML-------PGKI-GNMLFPHQ 400
++ K L++ DY ++E LS R T + P + G L +Q
Sbjct: 53 RIKKDEKQSLISA-GDYRHRRTEQEEDEELLSESRKTSNVCIRFEESPSYVKGGTLRDYQ 111
Query: 401 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHW 459
GL W+ SL+ G GIL D+MGLGKT+Q L L H R I +V+ PK+ L +W
Sbjct: 112 VRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 171
Query: 460 IKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ--DKGVLLTTYDIVRNNSKSLRGSSFI 517
+ E S + G R ++ V+ + V +T+Y++V I
Sbjct: 172 MNEFKRWVPSLRAVCLIGD-KDARAAFIRDVMMPGEWDVCVTSYEMV------------I 218
Query: 518 SDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALF 577
+++ W Y+++DE H IKN ++ ++ + E + +R++++GTP+QNNL ELWAL
Sbjct: 219 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 278
Query: 578 NFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNE 637
NF P++ F ++ K+ L +K + + L ++P+ LRR+K E
Sbjct: 279 NFLLPDVFNSADDFDSWFDT-------KNCLGDQKLV-----ERLHAVLKPFLLRRIKAE 326
Query: 638 V 638
V
Sbjct: 327 V 327
Score = 90 (36.7 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 49/191 (25%), Positives = 79/191 (41%)
Query: 528 WDYMILDEGHLIKNPSTQRAKS--LLEIPSAHRIIISGTPIQNNLKELWALFNFCCPEL- 584
WD + +IK S + + L I AHRI + + ++E
Sbjct: 207 WDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 266
Query: 585 LGDNK---WFKEKYELP-ILRGNDKHA--LDREKRIGSA-VAKELRERIQPYFLRRLKNE 637
L +N W + LP + D D + +G + + L ++P+ LRR+K E
Sbjct: 267 LQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAE 326
Query: 638 VFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI-VL-SAFDGSPLAALTIL- 694
V +L K E+ ++L L+ QR+ Y L +I +L SA + L IL
Sbjct: 327 V--------EKSLPPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILM 378
Query: 695 --KKICDHPLL 703
+K C+HP L
Sbjct: 379 QLRKCCNHPYL 389
Score = 38 (18.4 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 18/90 (20%), Positives = 37/90 (41%)
Query: 850 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG-TVEEKIYR-KQIFKGGLFKTATEHKEQI 907
W + Q ++R ++ + + R ++ ++ KI R K F + T +
Sbjct: 815 WERCNELQDIERIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTNKGKN- 873
Query: 908 RYFSQQDLRELLSLPKQGFDVSLTQQQLHE 937
Y ++D + L K GFD ++L +
Sbjct: 874 -YTEEEDRFLICMLHKMGFDKENVYEELRQ 902
Score = 37 (18.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 223 EESKGDDVADEEQETENVGIGLKRNEPRWV 252
E+ + +++ E ++T NV I + + P +V
Sbjct: 74 EQEEDEELLSESRKTSNVCIRFEES-PSYV 102
Score = 37 (18.1 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 717 DSM-LNPEDAALAEKLAMHIADVAEKDDFQE 746
+SM LNPE+ EKL K DF +
Sbjct: 749 ESMPLNPEETEEKEKLLTQGFTNWNKRDFNQ 779
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 279 (103.3 bits), Expect = 3.7e-44, Sum P(5) = 3.7e-44
Identities = 73/206 (35%), Positives = 113/206 (54%)
Query: 752 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKI 811
S K+ + +L L GH VLIFSQ KML+L+++ + +GYK+ RIDG + R +
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEA 1108
Query: 812 VNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKD 870
++ F G FLL+++ GGLG+ L AD VI+ D WNP D Q+ RA+RIGQ K
Sbjct: 1109 IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK 1168
Query: 871 VVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK----EQIRYFSQQDLRELLSLPKQGF 926
V++YR +T +VEE+I Q+ K + T + + S+Q+L ++L K G
Sbjct: 1169 VMIYRFVTRASVEERI--TQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDIL---KFGT 1223
Query: 927 DVSLTQQQLHEEHGDQHNMDESLEAH 952
+ L + + + GD ++S H
Sbjct: 1224 E-ELFKDEATDGGGDNKEGEDSSVIH 1248
Score = 235 (87.8 bits), Expect = 3.7e-44, Sum P(5) = 3.7e-44
Identities = 78/257 (30%), Positives = 123/257 (47%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L P+Q EGL WL QG IL D+MGLGKT+Q FL L+ K LV A
Sbjct: 723 GGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA 782
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQY--ELQYVLQDKGVLLTTYDIVRNNSK 509
P + + +W +E + Y G +R E ++ +D +
Sbjct: 783 PLSTIINWEREFEMWAPDMYVVTYVGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEA 841
Query: 510 SLRGSSFIS--DEAGDDDAI-----WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
S++ ++ + D AI W +I+DE H +KN ++ + L H+++++
Sbjct: 842 SVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLT 901
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTP+QNNL+EL+ L NF PE + + F E++ D + +E +I K+L
Sbjct: 902 GTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------D---IAKEDQI-----KKL 946
Query: 623 RERIQPYFLRRLKNEVF 639
+ + P+ LRRLK +VF
Sbjct: 947 HDMLGPHMLRRLKADVF 963
Score = 105 (42.0 bits), Expect = 3.7e-44, Sum P(5) = 3.7e-44
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 620 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSE 677
K+L + + P+ LRRLK +VF + K E+IV + L+ Q++ Y+ L N E
Sbjct: 944 KKLHDMLGPHMLRRLKADVFKN--------MPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 678 IVLSAFDGSPLAALTI---LKKICDHPLLLTKRAAE 710
+ + G+ ++ L + LKK C+HP L A E
Sbjct: 996 ALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAME 1031
Score = 55 (24.4 bits), Expect = 3.7e-44, Sum P(5) = 3.7e-44
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 221 EYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLV-SARESFESNLDGEEDGGSLSE- 278
E EE +D++ E ET + K +PR D + S R+ E L + G S E
Sbjct: 34 ENEEDPEEDLS--ETETPKLKKKKKPKKPR--DPKIPKSKRQKKERMLLCRQLGDSSGEG 89
Query: 279 ---VEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDD 330
VE +E ++ +++ K + K++ + +S EE DD+DD
Sbjct: 90 PEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 144
Score = 44 (20.5 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 261 ESFESNLDGEED----GGSLSEVEGDEHL 285
E+ E N +GEE GG L E E D H+
Sbjct: 422 EAKEDNSEGEEILEEVGGDLEE-EDDHHM 449
Score = 41 (19.5 bits), Expect = 3.7e-44, Sum P(5) = 3.7e-44
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 1029 PKNEAKLKESDIKER 1043
P+ E K++++++KER
Sbjct: 1612 PEGEEKVEKAEVKER 1626
Score = 38 (18.4 bits), Expect = 1.8e-42, Sum P(6) = 1.8e-42
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 41 PQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEP-NFSDITDFDSPLQSKT 89
P K+K+ G K SS + D+ + + DD N ++D + S++
Sbjct: 293 PLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRS 342
WARNING: HSPs involving 315 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1060 1026 0.00081 123 3 11 22 0.44 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 565
No. of states in DFA: 626 (67 KB)
Total size of DFA: 469 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 101.25u 0.12s 101.37t Elapsed: 00:00:05
Total cpu time: 101.36u 0.13s 101.49t Elapsed: 00:00:05
Start: Mon May 20 23:09:00 2013 End: Mon May 20 23:09:05 2013
WARNINGS ISSUED: 2