BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001526
(1060 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/626 (42%), Positives = 382/626 (61%), Gaps = 67/626 (10%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N LF HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+QI FL+G+F +
Sbjct: 84 SGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDAS 143
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P L++ W+KE +++ + G R L + Q GV++TTY
Sbjct: 144 LVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQ 203
Query: 503 IVRNNSK---SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
++ NN + S RG F+ WDY+ILDE H IK ST+ A IP+++R+
Sbjct: 204 MLINNWQQLSSFRGQEFV----------WDYVILDEAHKIKTSSTKSAICARAIPASNRL 253
Query: 560 IISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
+++GTPIQNNL+ELW+LF+F C LLG K FK +YE PI R +K A EK +G +
Sbjct: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKI 313
Query: 619 AKELRERIQPYFLRRLKNEVFHE----------------DDVTSSATLSKKNEMIVWLRL 662
++ L I+PYFLRR K +V + D + +LS+KN++I+W+RL
Sbjct: 314 SENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRL 373
Query: 663 TSCQRQLYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRA---------- 708
Q ++Y F++ E+++ SPLA L +LKK+CDHP LL+ RA
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARACCLLNLGTFS 431
Query: 709 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE 768
A+D +G DS P+ HI V + +E S K+ F++ LL +L E
Sbjct: 432 AQDGNEGEDS---PD--------VDHIDQVTDDTLMEE-----SGKMIFLMDLLKRLRDE 475
Query: 769 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLT 827
GH L+FSQ+R++LN+I+ + ++ +K LRIDGT T +R K +N FQ+ +FLLT
Sbjct: 476 GHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLT 535
Query: 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIY
Sbjct: 536 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595
Query: 888 RKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMD 946
R+Q+FK L + T E K RYFS+Q+LREL ++ + S+TQ QL H Q D
Sbjct: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSD 653
Query: 947 ESLEAHIQFLDTLGIAGVSHHSLLFS 972
L+ HI +L +LGIAG+S H L+++
Sbjct: 654 IKLDEHIAYLQSLGIAGISDHDLMYT 679
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/653 (41%), Positives = 392/653 (60%), Gaps = 58/653 (8%)
Query: 396 LFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454
LF HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+QI FL+G+F + L+ L++ P
Sbjct: 97 LFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTN 156
Query: 455 LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSK---SL 511
L++ W+ E +++ + G+ R L + Q GV++TTY ++ NN + S
Sbjct: 157 LINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASF 216
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
G +F+ WDY+ILDE H IK+ ST+ A IP+++R++++GTP+QNNL+
Sbjct: 217 NGQAFV----------WDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQ 266
Query: 572 ELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 630
ELW+LF+F C LLG K FK +YE PI+R +K A EK +G +++ L E I+PYF
Sbjct: 267 ELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYF 326
Query: 631 LRRLKNEV-----------FHEDDVTSSA-----TLSKKNEMIVWLRLTSCQRQLYEAFL 674
LRR K EV E + A +L++KN++IVW+RL Q ++Y F+
Sbjct: 327 LRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLARKNDLIVWIRLLPLQEEIYRKFV 386
Query: 675 N----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEK 730
+ E+++ SPLA L +LKK+CDHP LL+ RA +LN A + +
Sbjct: 387 SLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARACR--------LLNLGTATFSAQ 436
Query: 731 LAMHIADVAEKDDFQEQHDNI----SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 786
DV+ + D S K+ F++SLL++L EGH L+FSQ+ K+LN+I+
Sbjct: 437 DENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIE 496
Query: 787 ESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 845
+ +K +K LRIDGT T +R K + FQ+ +FLLT+QVGG+GLTLT A RV++
Sbjct: 497 RLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVI 556
Query: 846 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHK 904
DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T E K
Sbjct: 557 FDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKK 616
Query: 905 EQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGV 964
RYF++Q+L+EL ++ S TQ QL H Q DE L+ HI +L LGIAG+
Sbjct: 617 NPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGI 674
Query: 965 SHHSLLFSKTARVQ----VVQEEEEATRRKGTA-FVGNSSSSYLVARNVDGAE 1012
S H L+F++ V+ ++++ + +R A F+ S S V R G E
Sbjct: 675 SDHDLMFTRDLSVKEELDMLEDSQYIHQRVQKAQFLVESESQNTVQRQTTGIE 727
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/626 (41%), Positives = 386/626 (61%), Gaps = 53/626 (8%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSR 442
S +L ++ N L+ +Q+EG+ +L+SL+ G+ GGIL DDMGLGKT+QI FL+G+F +
Sbjct: 84 SGLLLYQELHNQLYEYQKEGIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDAS 143
Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
L+ L++ P +L+S W++E +++ + G R L + Q GV++TTY
Sbjct: 144 LVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQ 203
Query: 503 IVRNNSK---SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
++ NN + SL G F+ WDY+ILDE H IK+ ST+ A IP+++RI
Sbjct: 204 MLINNWQQLSSLNGQEFL----------WDYVILDEAHKIKSSSTKSAICARAIPASNRI 253
Query: 560 IISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
+++GTPIQNNL+ELW+LF+F C LLG + FK +YE PI R +K A EK +G +
Sbjct: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKI 313
Query: 619 AKELRERIQPYFLRRLKNEVFHEDD----------------VTSSATLSKKNEMIVWLRL 662
++ L I+PYFLRR K EV + + +LS+KN++I+W+RL
Sbjct: 314 SENLMAIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRL 373
Query: 663 TSCQRQLYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDS 718
Q ++Y F++ E+++ SPLA L +LKK+CDHP LL+ RA
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARAC--------G 423
Query: 719 MLNPEDAALAEKLAMHIADVAEKDDFQEQHDNI----SCKISFILSLLDKLIPEGHNVLI 774
+LN A + + + D ++ D + D+ S K+ F++ LL KL EGH L+
Sbjct: 424 LLNLGAAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLV 483
Query: 775 FSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 833
FSQ+R++LN+I+ + ++ +K LRIDGT T +R K ++ FQ+ +FLLT+QVGG+
Sbjct: 484 FSQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGV 543
Query: 834 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK
Sbjct: 544 GLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 603
Query: 894 GGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 952
L + T + K RYFS+Q+LREL ++ + F S TQ QL H Q D++L+ H
Sbjct: 604 DSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEH 661
Query: 953 IQFLDTLGIAGVSHHSLLFSKTARVQ 978
I FL +L IAG+S H L++++ V+
Sbjct: 662 IAFLHSLRIAGISDHDLMYTRDLSVK 687
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
PE=1 SV=1
Length = 1451
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/607 (41%), Positives = 382/607 (62%), Gaps = 45/607 (7%)
Query: 396 LFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454
L+ HQ+EG+ +L+SL+ G KGGIL DDMGLGKT+Q+ FL+G++ + L L+V P +
Sbjct: 105 LYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLSGMYDAELANHTLLVMPTS 164
Query: 455 LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGS 514
L+ +W++E +++E+ G+ R L+ + + GV++TTY ++ NN + L GS
Sbjct: 165 LIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLINNYEQL-GS 223
Query: 515 SFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELW 574
+ G + WDY+ILDE H IK ST+ AKS IP+ +R++++GTP+QNNL+E+W
Sbjct: 224 N------GHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMW 277
Query: 575 ALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 633
ALF+F C LLG +K FK +YE PI R +K A EK +G +++ L + I+PYFLRR
Sbjct: 278 ALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRR 337
Query: 634 LK---------------------NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
K N+ + + +L++KN++IVW L+S Q +Y
Sbjct: 338 TKADVQQKKLKLEEGFEEEEDQENKCPNAREGVEMPSLTRKNDLIVWTYLSSVQEDIYNK 397
Query: 673 FLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDV--LDGMDSMLNPEDAALA 728
F++ + + L SPLA LT+LKK+CDHP LL++RA + G DS L D +
Sbjct: 398 FISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVHSDES-- 455
Query: 729 EKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788
E I ++++ +E S K+ F++SL++ L EGH LIFSQ+RKML++++
Sbjct: 456 ESAVSQIDNISDHTLIEE-----SGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERV 510
Query: 789 IGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVD 847
+ ++ ++ LR+DGT T+ ++R K ++ FQ IFLLT+QVGG+G+TLT A+RV++ D
Sbjct: 511 LRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFD 570
Query: 848 PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQ 906
P+WNP+TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK L + T + K
Sbjct: 571 PSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP 630
Query: 907 IRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSH 966
RYFS+Q+LREL L + S TQQQL H D SL+ HI L ++ + G+S
Sbjct: 631 FRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISD 688
Query: 967 HSLLFSK 973
H L+F+K
Sbjct: 689 HDLMFTK 695
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
Length = 1493
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 216/576 (37%), Positives = 323/576 (56%), Gaps = 66/576 (11%)
Query: 362 LDDYSDDSVLE-DEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILG 420
L+D S++S E DEG + +PG + LF +Q+ G+RWLW LHCQ GGILG
Sbjct: 482 LEDDSEESDAEFDEG----------FKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILG 531
Query: 421 DDMGLGKTMQICGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VG 467
D+MGLGKT+QI FLAGL +S++ R ++V P T++ W+KE
Sbjct: 532 DEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPP 591
Query: 468 LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 527
I G+ ++ ++ V G+L+T+Y +R + D+ D
Sbjct: 592 FRVAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIR----------LMQDDISRYD-- 639
Query: 528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
W Y+ILDEGH I+NP+ + + + HRII+SG+P+QNNL+ELW+LF+F P LG
Sbjct: 640 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGT 699
Query: 588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
F E++ +PI G +A + + A LR+ I PY LRR+K+ DV S
Sbjct: 700 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMS 753
Query: 648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 705
+L KNE +++ RLT Q ++Y+ F++S+ V +G + L L+KIC+HP L +
Sbjct: 754 LSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFS 813
Query: 706 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL 765
L G+ P+D E+D F + S K+ + SLL
Sbjct: 814 --GGPKNLKGL-----PDDEL-------------EEDQFG--YWKRSGKMIVVESLLKIW 851
Query: 766 IPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 825
+G VL+FSQ+R+ML++++ + ++ Y +L++DGTT + R ++ + E +FL
Sbjct: 852 HKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFL 911
Query: 826 LTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEK 885
LT++VGGLG+ LT A+RV++ DP WNPSTD Q+ +RA+RIGQKK V VYRL+T GT+EEK
Sbjct: 912 LTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK 971
Query: 886 IYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
IY +QIFK L + +Q R+F DL EL +L
Sbjct: 972 IYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 357 bits (917), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 217/567 (38%), Positives = 318/567 (56%), Gaps = 70/567 (12%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 444
+ +PG I LF +Q ++WLW L+CQ GGI+GD+MGLGKT+QI FL+ L HS +
Sbjct: 267 FTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQ 326
Query: 445 KRALVVAPKTLLSHWIKE------------LTAVG----LSAKIREYFGTCVKTRQYELQ 488
K AL+V P TL+ W+ E L A G S + R+Y ++ E +
Sbjct: 327 KPALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYESDASESEAEESK 386
Query: 489 YVLQDKGVLLTTYDIVRNNSKSL--RGSSFISDEAG---DDDAI----WDYMILDEGHLI 539
++ +G + + +N +S+ RG I+ AG D I W Y +LDEGH I
Sbjct: 387 TSIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKI 446
Query: 540 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI 599
+NP ++ + S +I + +RII+SGTPIQNNL ELW LF+F P LG F+ ++ LPI
Sbjct: 447 RNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPI 506
Query: 600 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 659
G +A + + + A LR+ I PY LRR+K +V +A L KK+E +++
Sbjct: 507 NIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDV--------AADLPKKSEQVLF 558
Query: 660 LRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLLTKRAAEDVLDGMD 717
+LT QR+ Y+ FL + +G L + IL+KIC+HP L+T+
Sbjct: 559 CKLTPLQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKICNHPDLVTR----------- 607
Query: 718 SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 777
+ +H K+D+ S K+ I +LL +GH L+FSQ
Sbjct: 608 ------------EYLLH------KEDYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLFSQ 649
Query: 778 TRKMLNLIQESIGSKGYK---FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLG 834
TR+ML++++ IG K + R+DG+T + R +V++F + + +FLLT++VGGLG
Sbjct: 650 TRQMLDILE--IGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLG 707
Query: 835 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 894
+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK
Sbjct: 708 VNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 767
Query: 895 GLFKTATEHKEQIRYFSQQDLRELLSL 921
L + +Q R+F DL +L +L
Sbjct: 768 FLTNKILKDPKQRRFFKMTDLHDLFTL 794
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 204/599 (34%), Positives = 325/599 (54%), Gaps = 90/599 (15%)
Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL 443
S + +PG+I ++LF +Q+ ++WL+ L+ Q GGI+GD+MGLGKT+Q+ F+A L HS L
Sbjct: 285 SQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGL 344
Query: 444 IK-RALVVAPKTLLSHWIKELTAVG--LSAKIREYFGTCVKTRQY------ELQYVLQDK 494
+ L+V P T++ W E L I G+ + + Q +L+ ++ +
Sbjct: 345 LTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNS 404
Query: 495 GVLLTTYDIVRNNSKSLRG--SSF----ISDEAGDDDAI-------------------WD 529
+Y+ +N++++ + SS+ + D+ D I W
Sbjct: 405 KPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQ 464
Query: 530 YMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNK 589
Y +LDEGH I+NP ++ + + ++ + +RII+SGTPIQNNL ELW+LF+F P LG
Sbjct: 465 YAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLP 524
Query: 590 WFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSAT 649
F++++ +PI G +A + + + G A LR+ I PY LRR+K +V +
Sbjct: 525 VFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADV--------AKD 576
Query: 650 LSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLL--- 704
L +K EM+++ +LT QR Y FL+S + +G + L + IL+KIC+HP LL
Sbjct: 577 LPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRD 636
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 764
TKR D D P+ S K+ + LL
Sbjct: 637 TKRHNPDYGD-------PKR---------------------------SGKMQVVKQLLLL 662
Query: 765 LIPEGHNVLIFSQTRKMLNLIQESIGSKG-----YKFLRIDGTTKASDRVKIVNDFQEGD 819
+G+ L+F+Q+R+ML++++E I +K +LR+DGTT R +V+ F +
Sbjct: 663 WHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFN-NE 721
Query: 820 VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 879
+FLLT++VGGLG+ LT A+R+I+ DP WNPSTD Q+ +RA+RIGQK++V +YRLM
Sbjct: 722 SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVG 781
Query: 880 GTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 938
G++EEKIY +QIFK L +Q R+F +L +L SL G + + ++L+EE
Sbjct: 782 GSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEE 837
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 196/590 (33%), Positives = 285/590 (48%), Gaps = 91/590 (15%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK 445
Y +P I L +Q++G+ WL L+ GIL DDMGLGKT+Q LAG R +
Sbjct: 1256 YKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQE 1315
Query: 446 RA------------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 493
A LVV P TL HW+ E+ + T T + LQ+ ++
Sbjct: 1316 YARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKR 1375
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
+++ +YD+VRN+ R F +Y ILDEGH+IKN T+ +K++ ++
Sbjct: 1376 HNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIKNGKTKLSKAVKQL 1423
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ +RII+SGTPIQNN+ ELW+LF+F P LG + F +Y PIL D + RE+
Sbjct: 1424 TANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQE 1483
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
G L ++ P+ LRR+K +V + L K + L+ Q QLYE F
Sbjct: 1484 AGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYCTLSPLQVQLYEDF 1535
Query: 674 LNS-------EIVLSA------------FDGSPLAALTILKKICDHP-LLLTKRAAEDVL 713
S E V SA G AL L+K+C+HP L+LT +
Sbjct: 1536 AKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQ------ 1589
Query: 714 DGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL----------- 762
+PE AEKLA+ + + D Q + K+S + LL
Sbjct: 1590 -------HPEFKTTAEKLAVQNSSL---HDIQH-----APKLSALKQLLLDCGLGNGSTS 1634
Query: 763 ---DKLIPEGHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQ 816
+ + H +LIF Q + ML++++ + +LR+DG+ R IV+ F
Sbjct: 1635 ESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFN 1694
Query: 817 EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 876
+ LLT+ VGGLGL LT AD V+ V+ WNP D Q++DRA+RIGQK+ V VYRL
Sbjct: 1695 NDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRL 1754
Query: 877 MTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 925
+T GT+EEKI Q FK + T ++ ++ L +L +L K G
Sbjct: 1755 ITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 185/571 (32%), Positives = 284/571 (49%), Gaps = 68/571 (11%)
Query: 386 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAG-------- 437
+ LP I L +Q++G+ WL L+ GIL DDMGLGKT+Q +A
Sbjct: 1262 FKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKED 1321
Query: 438 -----LFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492
SR + +L++ P +L HW E K+ Y G T + L+ L
Sbjct: 1322 YEKTRSVESRALP-SLIICPPSLTGHWENEFDQYAPFLKVVVYAGG--PTVRLTLRPQLS 1378
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
D +++T+YD+ RN+ L + + +Y +LDEGH+IKN ++ AK++ E
Sbjct: 1379 DADIIVTSYDVARNDLAVLNKTEY------------NYCVLDEGHIIKNSQSKLAKAVKE 1426
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
I + HR+I++GTPIQNN+ ELW+LF+F P LG K F+E++ PI + +E+
Sbjct: 1427 ITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQ 1486
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
G + L +++ P+ LRRLK +V + L K + L Q+QLY
Sbjct: 1487 EAGVLALEALHKQVLPFMLRRLKEDVLSD--------LPPKIIQDYYCELGDLQKQLYMD 1538
Query: 673 FLNSE--IVLSAFDGSPLA--------ALTILKKICDHPLLLTKRAAEDVLDGMDSM--- 719
F + +V + S +A AL ++K+C+HP L+ + D +
Sbjct: 1539 FTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQT 1598
Query: 720 -LNPEDAALAEKLA-----MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVL 773
L+ D A KL+ + + E+D ++ + + I ++S H L
Sbjct: 1599 GLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVIS--------QHRAL 1650
Query: 774 IFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 830
IF Q + ML++++ + K ++R+DG+ DR K+V F E LLT++V
Sbjct: 1651 IFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKV 1710
Query: 831 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 890
GGLGL LT AD VI V+ WNP D Q++DRA+RIGQKK V VYR++T GT+EEKI Q
Sbjct: 1711 GGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQ 1770
Query: 891 IFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
FK + T +Q + D +LL L
Sbjct: 1771 KFKMNIASTVV--NQQNSGLASMDTHQLLDL 1799
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 184/553 (33%), Positives = 288/553 (52%), Gaps = 52/553 (9%)
Query: 392 IGNMLFPHQREGLRWLW----SLHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHS 441
I N L PHQREG+ +L+ + G+ G IL D+MGLGKT+Q + G++
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGC 358
Query: 442 R-LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTT 500
+ ++KRAL+V P +L+ +W KE S +I+ + T + + E V++ +
Sbjct: 359 KPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVF--TVDQDHKVEEFISSPLYSVMIIS 416
Query: 501 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 560
Y+++ + ++ F + +I DEGH +KN S + +L + RII
Sbjct: 417 YEMLLRSLDQIQAIEF------------NLLICDEGHRLKNSSIKTTTALTNLSCERRII 464
Query: 561 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
++GTPIQN+L+E +AL F P +LG +++ YE PI+R + A EK +G A
Sbjct: 465 LTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAA 524
Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
EL R+ F+ R EV ++ L K E I++ + T+ Q +LY L+S ++
Sbjct: 525 EL-TRLTGLFILRRTQEVINK-------FLPPKKENIIFCQPTALQLELYRKLLSSRVIS 576
Query: 681 SAFDG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 735
S G SP L + LKK+C+HP LL K E D D + L +
Sbjct: 577 SCLQGRLENSPHLICIGALKKLCNHPCLLFKALKEKCCDPKS------DEHVESSLYEGL 630
Query: 736 ADVAEKDDFQEQHDNI-SCKISFILSLLDKL--IPEGHNVLIFSQTRKMLNLIQESIGSK 792
DV +D + I S K+ ++ LL + + V++ S + LN++ E+
Sbjct: 631 TDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCY 690
Query: 793 GYKFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 851
GY + R+DG T S R +IV+ F + A IFLL+S+ GG+GL L A +I+ D WN
Sbjct: 691 GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWN 750
Query: 852 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIR 908
P+TD Q++ R +R GQK V +YRL+T GT+EEKIY++QI K G ++ E I
Sbjct: 751 PATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI- 809
Query: 909 YFSQQDLRELLSL 921
+FS ++LR L +L
Sbjct: 810 HFSVEELRNLFTL 822
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 258 bits (658), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/564 (32%), Positives = 281/564 (49%), Gaps = 80/564 (14%)
Query: 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 442
+ +P I L +Q+EG+ WL L+ GIL DDMGLGKT+Q +A ++R
Sbjct: 1347 AFSIPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQK 1406
Query: 443 LIKRA----------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 492
L + + L+V P TL HW +EL+ K+ Y G + +++ ++
Sbjct: 1407 LFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGP--PAERAKIRSKMK 1464
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
V++T+YDI RN+ DE D W+Y +LDEGH+IKN + K++
Sbjct: 1465 KSDVVVTSYDICRNDV----------DELVKID--WNYCVLDEGHVIKNARAKLTKAVKS 1512
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ S HR+I+SGTPIQNN+ ELW+LF+F P LG K F+E++ PI D + +E+
Sbjct: 1513 LRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKER 1572
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
G+ + + +++ P+ LRRLK +V A L K + ++ QR+L
Sbjct: 1573 ERGTLALEAIHKQVLPFMLRRLKEDVL--------ADLPPKIIQDYYCDMSDLQRKLLND 1624
Query: 673 FLNSEIVLSAFD-----------------GSPLAALTILKKICDHP-LLLTKRAAEDVLD 714
F++ + + AL ++K+C+HP L+LT++
Sbjct: 1625 FVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEK------- 1677
Query: 715 GMDSMLNPEDAALAEKLA-----MHIADVAEKDDFQEQ------HDNISCKISFILSLLD 763
+P+ A+ ++LA +H A K Q N S + I S L
Sbjct: 1678 ------HPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALT 1731
Query: 764 KLIPEGHNVLIFSQTRKMLNLIQESI---GSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 820
+ E H VLIF Q + ML+++++ + ++R+DG+ + + R + V F
Sbjct: 1732 NAVSE-HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPS 1790
Query: 821 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 880
+ LLT+ VGGLGL LT AD VI V+ WNP D Q++DRA+RIGQKK V VYRL+T G
Sbjct: 1791 IDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRG 1850
Query: 881 TVEEKIYRKQIFKGGLFKTATEHK 904
+EEKI Q FK + T +
Sbjct: 1851 CLEEKIMGLQRFKMNVASTVVNQQ 1874
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 256 bits (654), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 176/563 (31%), Positives = 290/563 (51%), Gaps = 72/563 (12%)
Query: 391 KIGNMLFPHQREGLRWLWSL------HCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 442
K+ +L PHQ EG+++L+ C G I+ D+MGLGKT+Q L L
Sbjct: 259 KLARILRPHQIEGVKFLYKCVTGRIDRC-ANGCIMADEMGLGKTLQCIALLWTLLKQSPQ 317
Query: 443 ----LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD----- 493
I++A++ P +L+ +W EL L F K+ + EL LQ
Sbjct: 318 AGKPTIEKAIITCPSSLVKNWANELVK-WLGKDAITPFILDGKSSKQELIMALQQWASVH 376
Query: 494 -----KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 548
+ VL+ +Y+ +R+ + L ++A ++ DEGH +KN +
Sbjct: 377 GRQVTRPVLIASYETLRSYVEHL------------NNAEIGMLLCDEGHRLKNSDSLTFT 424
Query: 549 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHAL 608
+L ++ R+I+SGTPIQN+L E ++L NF P LLG + F++ YE+PIL+G D
Sbjct: 425 ALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGT 484
Query: 609 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 668
+++K G A EL + + + +RR N++ S L K E +V+ L+ Q
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRR-TNDIL-------SKYLPVKYEHVVFCNLSEFQLS 536
Query: 669 LYEAFLNS-EI--VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDA 725
LY+ F+ S EI +L PL A+ +LKKIC+HP LL ED L+G +++ P
Sbjct: 537 LYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLN--LTED-LEGCEALFPPGFI 593
Query: 726 ALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE-----GHNVLIFSQTRK 780
+ + + NI +S + +L++++ + +++ S
Sbjct: 594 P---------------RELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTS 638
Query: 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTK 839
L+L ++ ++GYK LR+DGT + R ++V+ F + + A +FLL+S+ GG G+ L
Sbjct: 639 TLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIG 698
Query: 840 ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT 899
A+R+I+ DP WNP+ D Q++ R +R GQKKD VYR + GT+EEKI+++Q K L
Sbjct: 699 ANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSC 758
Query: 900 ATEHKEQI-RYFSQQDLRELLSL 921
+ + + R+FS +LR+L L
Sbjct: 759 VVDEAQDVERHFSLDNLRQLFQL 781
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
musculus GN=Rad26l PE=2 SV=2
Length = 699
Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 180/588 (30%), Positives = 279/588 (47%), Gaps = 103/588 (17%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH------- 440
+P I L +QREG ++L+ + +G+G ILGDDMGLGKT+Q+ FLA + H
Sbjct: 114 IPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTRED 173
Query: 441 ------------------SRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCV-- 480
S K L+VAP ++L +W EL G YF V
Sbjct: 174 IENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWG-------YFRVTVLH 226
Query: 481 -KTRQYELQYVLQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538
+ EL + Q K + LTTY+ +R + L + W +I+DE H
Sbjct: 227 GSKKDNELLRLKQRKCEIALTTYETLRLCLEEL------------NSLEWSAIIVDEAHR 274
Query: 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 598
IKNP + + + + RI ++GT +QNN+KELW + ++ P LLG FK+++ P
Sbjct: 275 IKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDP 334
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 658
+ G A RE G L +++ +FLRR K + L KK + +V
Sbjct: 335 VEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLI--------KGQLPKKEDRMV 386
Query: 659 WLRLTSCQRQLYEAFLNSE-IVLSAFDGSP---------------------------LAA 690
+ LT Q+ +Y+ L +E + L P L+
Sbjct: 387 YCSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSY 446
Query: 691 LTILKKICDHPLLL----TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD--- 743
LT+L+K+ +H LL T + E V+ + +++ D +K
Sbjct: 447 LTVLQKVANHVALLQAASTSKHQETVIK-----------RICDRVFSRFPDFVQKSKDAA 495
Query: 744 FQEQHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT 802
F+ D S K+ + LL+ + VL+FS + K+L+++Q+ + G + R+DG+
Sbjct: 496 FETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGS 555
Query: 803 TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 862
TK+ +R+KIV +F I L+++ GGLGL A+ VI+ DP WNP+ D Q+VDRA
Sbjct: 556 TKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRA 615
Query: 863 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
YRIGQ +DV V RL++ GTVEE +Y +Q++K L + RYF
Sbjct: 616 YRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 663
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo
sapiens GN=RAD26L PE=1 SV=1
Length = 712
Score = 253 bits (645), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 180/585 (30%), Positives = 278/585 (47%), Gaps = 96/585 (16%)
Query: 388 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH------- 440
+P I L +QREG R+L+ + G G ILGDDMGLGKT+Q+ FLA + H
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 185
Query: 441 -------------------SRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCV- 480
S K L+VAP ++L +W EL G YF V
Sbjct: 186 IENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG-------YFRVTVL 238
Query: 481 --KTRQYELQYVLQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 537
+ EL V Q K + LTTY+ +R DE + W +I+DE H
Sbjct: 239 HGNRKDNELIRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAH 286
Query: 538 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 597
IKNP + + + + RI ++GT +QNN+KELW + ++ P LLG +FK+++
Sbjct: 287 RIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSD 346
Query: 598 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMI 657
P+ G A RE G + L +++ +FLRR K + + L KK + +
Sbjct: 347 PVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQ--------LPKKEDRM 398
Query: 658 VWLRLTSCQRQLYEAFLNSEIVLSAFDGSP----------------------------LA 689
V+ LT Q+ +Y+ L +E V S L+
Sbjct: 399 VYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLS 458
Query: 690 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---FQE 746
LT+L+K+ +H LL A ++++ + +++ D +K F+
Sbjct: 459 YLTVLQKVANHVALL---QAASTSKQQETLIK----RICDQVFSRFPDFVQKSKDAAFET 511
Query: 747 QHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA 805
D S K+ + LL+ VL+FS + K+L+++Q+ + G + R+DG+TK+
Sbjct: 512 LSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKS 571
Query: 806 SDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865
+R+KIV +F I L+++ GGLGL A+ V++ DP WNP+ D Q++DRAYRI
Sbjct: 572 EERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRI 631
Query: 866 GQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 910
GQ +DV V RL++ GTVEE +Y +QI+K L + RYF
Sbjct: 632 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYF 676
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV A L +K E ++ +++ QR LY ++L+ DGS
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + +E L
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
V D ++ S K + +L KL H VL+F Q ++ ++++ +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243
Query: 908 RYFSQ 912
R F Q
Sbjct: 1244 RAFLQ 1248
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV A L +K E ++ +++ QR LY ++L+ DGS
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + +E L
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
V D ++ S K + +L KL H VL+F Q ++ ++++ +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243
Query: 908 RYFSQ 912
R F Q
Sbjct: 1244 RAFLQ 1248
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/546 (30%), Positives = 271/546 (49%), Gaps = 76/546 (13%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ L +Q +GL WL SL+ GIL D+MGLGKT+Q + L +++ L++
Sbjct: 769 VNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLII 828
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L +W+ E + + Y G+ R + Q VLLTTY+ V
Sbjct: 829 VPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV------ 882
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+A W YMI+DEGH +KN + + L + +R++++GTP+QN
Sbjct: 883 ------IKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNK 936
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 937 LPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETI--LIIRRLHKVLRPF 994
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV H+ L K E I+ +++ QR LY+ + ++L+ DGS
Sbjct: 995 LLRRLKKEVEHQ--------LPDKVEYIIKCDMSALQRVLYKHMQSKGVLLT--DGSEKG 1044
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+K+C+HP + + EK H
Sbjct: 1045 KHGKGGAKALMNTIVQLRKLCNHPFMFQH--------------------IEEKYCDHTGG 1084
Query: 738 ---VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY 794
V+ D ++ +S K + +L KL H VL+F Q + + +I++ +G + +
Sbjct: 1085 HGVVSGPDLYR-----VSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQF 1139
Query: 795 KFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 853
+LR+DGTTKA DR +++ F +G +FLL+++ GGLGL L AD V++ D WNP
Sbjct: 1140 GYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPH 1199
Query: 854 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHK 904
D Q+ DRA+RIGQ+ +V V RLMT +VEE+I Y+ +++ + G+F +
Sbjct: 1200 QDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGS 1259
Query: 905 EQIRYF 910
E+ ++
Sbjct: 1260 ERQQFL 1265
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 864 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 918 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV A L +K E ++ +++ QR LY ++L+ DGS
Sbjct: 976 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + +E L
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
V D ++ S K + +L KL H VL+F Q ++ ++++ +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243
Query: 908 RYFSQ 912
R F Q
Sbjct: 1244 RAFLQ 1248
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
+ +L +Q +GL WL SL+ GIL D+MGLGKT+Q + L H R+ L++
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y G+ R + Q VLLTTY+ +
Sbjct: 802 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 855
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + R++++GTP+QN
Sbjct: 856 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P +K L+ E+ I + + L + ++P+
Sbjct: 910 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 967
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV A L +K E ++ +++ QR LY ++L+ DGS
Sbjct: 968 LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1017
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + +E L
Sbjct: 1018 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1061
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
V D ++ S K + +L KL H VL+F Q ++ ++++ +G+K+L
Sbjct: 1062 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1116
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTKA DR ++ F E G IFLL+++ GGLGL L AD VI+ D WNP D
Sbjct: 1117 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1176
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1177 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1235
Query: 908 RYFSQ 912
R F Q
Sbjct: 1236 RAFLQ 1240
>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp.
japonica GN=RAD54 PE=1 SV=1
Length = 980
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 182/567 (32%), Positives = 285/567 (50%), Gaps = 73/567 (12%)
Query: 396 LFPHQREGLRWLWS-----LHCQG-KGGILGDDMGLGKTMQICGFLAGL----FHSR-LI 444
L PHQREG+++++ L+ G G IL DDMGLGKT+Q L L F ++ ++
Sbjct: 235 LRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSITLLYTLLCQGFDAKPMV 294
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV------LQDKGVLL 498
KRA+VV P +L+S+W E+ L ++ + C TR L + L VL+
Sbjct: 295 KRAVVVTPTSLVSNWESEIIK-WLKGRV-QLLALCESTRADVLSGIESFLKPLSRLQVLI 352
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
+Y+ R +S + D +I DE H +KN T K+L +P R
Sbjct: 353 VSYETFRMHSSKF-----------ERPGSCDLLICDEAHRLKNDQTLTNKALAALPCKRR 401
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
I++SGTP+QN+L+E +++ NF P +LGD +F+ YE PI+ G + A EK +GS
Sbjct: 402 ILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNLGSER 461
Query: 619 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
+ EL ++ + LRR + S L K +V +LT+ Q LY F++S+
Sbjct: 462 SAELSAKVNLFILRR--------TNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKN 513
Query: 679 VLSAF-DGSP----LAALTILKKICDHPLLL--TKRAAEDVLDGMDSMLN---PE----- 723
V +G+ LA +T LKK+C+HP L+ T ++ G D L PE
Sbjct: 514 VKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFSGR 573
Query: 724 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL-IPEGHNVLIFSQTRKML 782
+ M + +S K+ + LL L + +++ S + L
Sbjct: 574 SGSWTGGGGMWV--------------ELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTL 619
Query: 783 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKAD 841
+L + + Y ++R+DG T + R K+VN F + +FLL+S+ GG GL L +
Sbjct: 620 DLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGGN 679
Query: 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 901
R+I+ DP WNP+ D Q+ R +R GQKK V +YR ++ GT+EEK+Y++Q+ K GL K
Sbjct: 680 RLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ 739
Query: 902 EH----KEQIRYFSQQDLRELLSLPKQ 924
+ K Q S +DLR+L + +Q
Sbjct: 740 QEQADGKMQGSSLSTEDLRDLFTFHEQ 766
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 168/512 (32%), Positives = 271/512 (52%), Gaps = 78/512 (15%)
Query: 389 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSRLIKRA 447
P + L P+Q +G+ WL SLH GIL D+MGLGKT+Q FL L + ++
Sbjct: 189 PAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPF 248
Query: 448 LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYEL---QYVLQDKGVLLTTYDIV 504
LV+APK+ L++W++E+ + + + K + EL + + D V++ +Y+I+
Sbjct: 249 LVIAPKSTLNNWLREINR--WTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEII 306
Query: 505 RNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 564
L+ + W+Y+I+DE H IKN + ++ L E S +R++I+GT
Sbjct: 307 IREKSPLKKIN------------WEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGT 354
Query: 565 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624
P+QNNL ELWAL NF P++ D + F + + ++ D++K + K+L
Sbjct: 355 PLQNNLHELWALLNFLLPDIFSDAQDFDDWF------SSESTEEDQDK-----IVKQLHT 403
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 684
+QP+ LRR+K++V +L K E+ +++ ++S Q++ Y+ L + L A +
Sbjct: 404 VLQPFLLRRIKSDV--------ETSLLPKKELNLYVGMSSMQKKWYKKILEKD--LDAVN 453
Query: 685 GSP---------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 735
GS L + L+K C+HP L DG AE +
Sbjct: 454 GSNGSKESKTRLLNIMMQLRKCCNHPYL---------FDG------------AEPGPPYT 492
Query: 736 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK 795
D E + K+ + LL KL EG VLIFSQ ++L+++++ + Y+
Sbjct: 493 TD--------EHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYE 544
Query: 796 FLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
+ RIDG+T DR++ ++D+ D +FLLT++ GGLG+ LT AD V++ D WNP
Sbjct: 545 YCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQA 604
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
D Q++DRA+RIGQKK V V+RL+T +VEEKI
Sbjct: 605 DLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKI 636
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 166/519 (31%), Positives = 261/519 (50%), Gaps = 72/519 (13%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL W+ SL+ GIL D+MGLGKT+Q F+ L + + L++
Sbjct: 865 VGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLII 924
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L++WI E S K Y G + + Q + VLLTT++ +
Sbjct: 925 VPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYI------ 978
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D W +MI+DEGH IKN ++ +L S +R+I++GTP+QNN
Sbjct: 979 ------IKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNN 1032
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L+ E+ + + K L + ++
Sbjct: 1033 LPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEAL--LIIKRLHKVLR 1090
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA-------FLNSEIVL 680
P+ RRLK +V E L K E ++ L+ Q +LY+ F++ E
Sbjct: 1091 PFLFRRLKKDVEKE--------LPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGK 1142
Query: 681 SAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAE 740
+ G + LKKIC+HP + EDV +D P +
Sbjct: 1143 TGIKGLQNTVMQ-LKKICNHPFIF-----EDVERAID----PSGTNV------------- 1179
Query: 741 KDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKF 796
++ + + LLD+++P+ GH L+F Q +++ ++++ + SK +K+
Sbjct: 1180 ---------DLLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKY 1230
Query: 797 LRIDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 854
LR+DG+TK+ DR ++ F + DV IF+L+++ GGLGL L AD VI+ D WNP
Sbjct: 1231 LRLDGSTKSDDRCSLLAQFNDPKSDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 1289
Query: 855 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
D Q+ DRA+RIGQ K+V + RL+T ++EE I + +K
Sbjct: 1290 DLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYK 1328
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
Length = 989
Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 180/557 (32%), Positives = 290/557 (52%), Gaps = 61/557 (10%)
Query: 358 LVNVLDDYSDD--SVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGK 415
L +LDD D +V +D T GP +L K G L +Q G++WL ++ +
Sbjct: 357 LSRILDDCKDHAHTVTKDFERCT-EGPLQLPLL--KEGCTLHDYQLIGVKWLIMMYNKDL 413
Query: 416 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREY 475
ILGD+MGLGKT+QI FL+ L L+V P + + +WI E S ++ Y
Sbjct: 414 NAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTY 473
Query: 476 FGTCVKTRQYELQYVLQDKG---VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMI 532
+G+ R++ V + K V+LTTY++V + S D+ + +Y+I
Sbjct: 474 YGS-QDERKHLRHRVKKQKDHIDVILTTYNMVTSKS---------DDKKFFKNFSLNYVI 523
Query: 533 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 592
DEGH++KN ++R + L+++ +I+++GTP+QNNL EL +L F ++ NK+ +
Sbjct: 524 YDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVF--NKYCE 581
Query: 593 EKYEL--------PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDV 644
+ L P L +K AL ++ RI A A +QPY LRRLKN+V
Sbjct: 582 DITHLLQHFKQLGPALDTKNK-ALYQQDRIEEAKAI-----LQPYILRRLKNQVL----- 630
Query: 645 TSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 704
+L K+E I+ + + Q+QLY+ + + + S G +L L++ +HPLL
Sbjct: 631 ---GSLPSKSEQIIEVEMKKPQKQLYDNIVEA-LQQSEESGDSYGSLMRLRQAANHPLLR 686
Query: 705 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIA-DVAEKDDFQEQH--DNISCKISFILS- 760
+ LD + ML + A A+K H++ D+A D + + C F+L+
Sbjct: 687 RSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNE 746
Query: 761 ----------LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
LD ++PE G VLIFSQ ML++++ + +GY + R+DG T
Sbjct: 747 QLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVL 806
Query: 807 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 866
DR +++N+F +FLL+++ GGLG+ LT A+ +I+ D +NP D Q+ DR +R+G
Sbjct: 807 DRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMG 866
Query: 867 QKKDVVVYRLMTCGTVE 883
Q+K V V RL++ GTVE
Sbjct: 867 QEKPVHVTRLVSKGTVE 883
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 167/545 (30%), Positives = 279/545 (51%), Gaps = 87/545 (15%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 450
+G L +Q +GL+W+ SL GIL D+MGLGKT+Q L L+ + I+ LV+
Sbjct: 763 VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E + + + G+ + + + + + V+LTT++ +
Sbjct: 823 VPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYI------ 876
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I + A W +MI+DEGH +KN ++ + +L + +R+I++GTP+QNN
Sbjct: 877 ------IKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNN 930
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P++ K F E + P G DK L E+ + V + L + ++
Sbjct: 931 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETL--LVIRRLHKVLR 988
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL-----------NS 676
P+ LRRLK +V E L K E +V ++++ Q+ +Y+ L N
Sbjct: 989 PFLLRRLKKDVEKE--------LPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNK 1040
Query: 677 EIV-LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 735
++V L F+ + LKKIC+HP V + ++ +NP
Sbjct: 1041 KMVGLRGFNNQ----IMQLKKICNHPF---------VFEEVEDQINPT------------ 1075
Query: 736 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGS 791
+E +D+I +++ LLD+++P+ GH VLIF Q ++++++++ +
Sbjct: 1076 ---------RETNDDI-WRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRY 1125
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAW 850
K+LR+DG TK+ +R +++ F D + F+L+++ GGLGL L AD VI+ D W
Sbjct: 1126 INIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDW 1185
Query: 851 NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI----YRK-----QIFKGGLFKTAT 901
NP D Q+ DRA+RIGQK +V + RL+T +VEE I Y+K ++ + G F +
Sbjct: 1186 NPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKS 1245
Query: 902 EHKEQ 906
+EQ
Sbjct: 1246 TSEEQ 1250
>sp|P43610|IRC5_YEAST Uncharacterized ATP-dependent helicase IRC5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC5 PE=3
SV=2
Length = 853
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 267/550 (48%), Gaps = 71/550 (12%)
Query: 395 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 454
+L P+Q EGL WL +L+ G GIL D+MGLGKT+Q LA ++ LV AP +
Sbjct: 221 ILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLS 280
Query: 455 LLSHWIKELTAVGLSAKIREYFGT-CVKTRQYELQYVLQD---KGVLLTTYDIVRNNSKS 510
L +W+ E + +Y+GT K R +L+ + G+++T+Y+I+
Sbjct: 281 TLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEII------ 334
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 570
LR + I + W ++I+DEGH +KN + + K L +I +++R++++GTP+QNNL
Sbjct: 335 LRDTDLIMSQN------WKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNL 388
Query: 571 KELWALFNFCCPELLGD----NKWFKEKYELPILRGNDKHALDR--EKRIGSAVAKELRE 624
ELW+L NF P++ D NKWF + L + G++ AL++ + + L
Sbjct: 389 AELWSLLNFIMPDIFADFEIFNKWF-DFDSLNLGSGSNSEALNKLINDELQKNLISNLHT 447
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 684
++P+ LRRLK V + L K E I+ +TS Q + Y+A LN ++ + F
Sbjct: 448 ILKPFLLRRLKKVVL-------ANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFK 500
Query: 685 GSPLAALTILKKICDHPLLLTKRAAEDVLD---------GMDSMLNPE----DAALAEKL 731
T+ + H ++ R+ D ++ D+ +NP D + L
Sbjct: 501 ELIKDFFTLNDEYIGH---VSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNL 557
Query: 732 AMHIADVAEKDDFQEQHDNISCKISFI--------------------LSLLDKLIP---- 767
M I++ ++ + I F L +L KLIP
Sbjct: 558 QMEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLIS 617
Query: 768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLL 826
EGH VLI+SQ ML+LI++ + RIDG+ R + F D IFLL
Sbjct: 618 EGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLL 677
Query: 827 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
+++ GLG+ L AD V++ D WNP D Q++DR +RIGQ+ V+VYRL T+E I
Sbjct: 678 STRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVI 737
Query: 887 YRKQIFKGGL 896
+ K L
Sbjct: 738 LTRAANKRNL 747
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 170/545 (31%), Positives = 261/545 (47%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 780 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 833
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 834 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 888 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 945
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 946 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 995
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + AE L
Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPY----------------MFQHIEESFAEHLGYSNGV 1039
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
+ + ++ S K + +L KL H VL+F Q ++ ++++ + + +L
Sbjct: 1040 INGAELYR-----ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYL 1094
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTK+ DR ++ F E G IFLL+++ GGLGL L AD V++ D WNP D
Sbjct: 1095 RLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDL 1154
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1155 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1213
Query: 908 RYFSQ 912
R F Q
Sbjct: 1214 RAFLQ 1218
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 168/514 (32%), Positives = 251/514 (48%), Gaps = 61/514 (11%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVV 450
+G L +Q GL+W+ SL+ GIL D+MGLGKT+Q + L R LV+
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVI 472
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + L++W E S Y G + Q + VLLTTY+ +
Sbjct: 473 VPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYI------ 526
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSA-HRIIISGTPIQNN 569
I D W YMI+DEGH +KN ++ +L S+ +R+I++GTP+QNN
Sbjct: 527 ------IKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNN 580
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 627
L ELWAL NF P + K F E + P G DK L E+ + V + L + ++
Sbjct: 581 LPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESL--LVIRRLHKVLR 638
Query: 628 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLY-----EAFLNSEIVLSA 682
P+ LRRLK +V A L K E ++ +++ Q++LY L E
Sbjct: 639 PFLLRRLKKDV--------EAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRG 690
Query: 683 FDGSPLAALTI--LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAE 740
G T+ LKKIC+HP + EDV +D D
Sbjct: 691 KTGIKGLQNTVMQLKKICNHPFVF-----EDVERSIDPTGFNYDMLW------------- 732
Query: 741 KDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRID 800
+S K + +L KL GH +L+F Q +++N++++ + + +++LR+D
Sbjct: 733 ---------RVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLD 783
Query: 801 GTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 859
G+TKA DR K++ F + +FLL+++ GGLGL L AD VI+ D WNP D Q+
Sbjct: 784 GSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQ 843
Query: 860 DRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
DRA+RIGQ K+V +YRL+T +VEE I + +K
Sbjct: 844 DRAHRIGQTKEVRIYRLITEKSVEENILARAQYK 877
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 177/548 (32%), Positives = 286/548 (52%), Gaps = 50/548 (9%)
Query: 396 LFPHQREGLRWLW----SLHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 444
L PHQ+EG+ +L+ + G+ G IL D+MGLGKT+Q + G + + +I
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355
Query: 445 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD--KGVLLTTYD 502
K+ L+V P +L+++W KE S +I+ + + ++++ ++ VL+ +Y+
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIF----TVDQDHKVEEFIKSIFYSVLIISYE 411
Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
++ + ++ F D +I DEGH +KN + + +L+ + RII++
Sbjct: 412 MLLRSLDQIKNIKF------------DLLICDEGHRLKNSAIKTTTALISLSCEKRIILT 459
Query: 563 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 622
GTPIQN+L+E +AL +F P +LG +++ YE PI+ + A + EK +G A EL
Sbjct: 460 GTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAEL 519
Query: 623 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA 682
+ LRR + + + L K E +V+ R + Q +LY LNS++V
Sbjct: 520 TCLTGLFILRRTQEII--------NKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC 571
Query: 683 FDG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
G SP L + LKK+C+HP LL E N E + L++ AD
Sbjct: 572 LQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDK-NEEKSLYKGLLSVFPAD 630
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
F E+ +S +L+++ +L P VL+ S + LN++QE GY +
Sbjct: 631 Y-NPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLV-SNYTQTLNILQEVCKRHGYAYT 688
Query: 798 RIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DG T S R +IV+ F + IFLL+S+ GG+GL L +I+ D WNP+TD
Sbjct: 689 RLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDI 748
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQ 913
Q++ R +R GQK V +YRL+T GT+EEKIY++QI K GL T+ E I+ FS +
Sbjct: 749 QAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVE 807
Query: 914 DLRELLSL 921
+L+ L +L
Sbjct: 808 ELKNLFTL 815
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 170/545 (31%), Positives = 261/545 (47%), Gaps = 70/545 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 450
I L +Q +GL W+ SL+ GIL D+MGLGKT+Q + L H RL L++
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + LS+W E S Y GT R Q VLLTTY+ +
Sbjct: 785 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 838
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 569
I D+ W YMI+DEGH +KN + + L + RI+++GTP+QN
Sbjct: 839 ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
Query: 570 LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 629
L ELWAL NF P + F++ + P ++ L+ E+ I + + L + ++P+
Sbjct: 893 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 950
Query: 630 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 687
LRRLK EV + L +K E ++ +++ Q+ LY I+L+ DGS
Sbjct: 951 LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1000
Query: 688 ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 737
+ + L+KIC+HP M + + AE L
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPY----------------MFQHIEESFAEHLGYSNGV 1044
Query: 738 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 797
+ + ++ S K + +L KL H VL+F Q ++ ++++ + + +L
Sbjct: 1045 INGAELYR-----ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYL 1099
Query: 798 RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 856
R+DGTTK+ DR ++ F E G IFLL+++ GGLGL L AD V++ D WNP D
Sbjct: 1100 RLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDL 1159
Query: 857 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 907
Q+ DRA+RIGQ+ +V V RL T +VEEKI Y+ +++ + G+F + E+
Sbjct: 1160 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1218
Query: 908 RYFSQ 912
R F Q
Sbjct: 1219 RAFLQ 1223
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
erecta GN=okr PE=3 SV=1
Length = 784
Score = 242 bits (618), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 169/558 (30%), Positives = 281/558 (50%), Gaps = 67/558 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 441
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210
Query: 442 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 493
I +A+VV+P +L+ +W KE T + + +E T Q+ +
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKE--NTIRALEQFSMTSSRLG 268
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
VLL +Y+ R + E G +I DEGH +KN ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQ 376
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
A +EL + +RR N++ + L K EM++ +LTS Q +LY F
Sbjct: 377 RAIAKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTSIQLELYTNF 428
Query: 674 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAA 726
L S+ V + + LA +T LKKIC HP L+ ++ + D
Sbjct: 429 LKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEK------------ITARDKG 476
Query: 727 LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLI 785
+ ++ KD E +S K + +L + +G++ V++ S + L+L
Sbjct: 477 FENSQNVLPSNYNAKDLNPE----LSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 786 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVI 844
++ + Y F+R+DGT R K+V+ F + + + +F+L+S+ GG GL L A+R+
Sbjct: 533 EQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLF 592
Query: 845 VVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK 904
+ DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T ++
Sbjct: 593 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 652
Query: 905 EQI-RYFSQQDLRELLSL 921
E ++F++ DL++L +
Sbjct: 653 ESAEKHFTRDDLKDLFTF 670
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
OS=Gallus gallus GN=RAD54L PE=2 SV=1
Length = 733
Score = 242 bits (618), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 283/556 (50%), Gaps = 63/556 (11%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSRL--- 443
+ +L PHQREG+++LW + G I+ D+MGLGKT+Q + L
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCK 197
Query: 444 --IKRALVVAPKTLLSHWIKELTAVGLSAKIREYF--GTCVKTRQYELQYVLQDKG---- 495
I++A+VV+P +L+ +W E+ L +I+ G + +L + +G
Sbjct: 198 PEIEKAMVVSPSSLVRNWYNEVEK-WLGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVP 256
Query: 496 --VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
+L+ +Y+ R ++++L+ S +I DEGH +KN Q ++L +
Sbjct: 257 SPILIISYETFRLHAEALQKGSV------------GLVICDEGHRLKNSENQTYQALNSL 304
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ R++ISGTPIQN+L E ++L +F +LG + FK +ELPIL+G D A + E++
Sbjct: 305 NTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQ 364
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
G KEL + +RR + + S L K E +V RLT Q +LY+ F
Sbjct: 365 KGEERLKELISIVNRCLIRRTSDIL--------SKYLPVKIEQVVCCRLTPLQAELYKNF 416
Query: 674 LNS-----EIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALA 728
L E+ + S L+++T LKK+C+HP L+ + E E+
Sbjct: 417 LKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVE------------EEEGFM 464
Query: 729 EKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788
L + A + K + Q + +IL++ V++ S + L+L ++
Sbjct: 465 GALDLFPAGYSTKS-VEPQLSGKMLVLDYILAVTKST--SNDKVVLVSNYTQTLDLFEKL 521
Query: 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVV 846
++ Y ++R+DGT R K+V F +P IF+L+S+ GG GL L A+R+++
Sbjct: 522 CRNRRYLYVRLDGTMSIKKRAKVVERFNSPS-SPEFIFMLSSKAGGCGLNLIGANRLVMF 580
Query: 847 DPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 906
DP WNP+ D Q++ R +R GQKK +YRL++ GT+EEKI+++Q K L + ++
Sbjct: 581 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQD 640
Query: 907 I-RYFSQQDLRELLSL 921
+ R+FS +L+EL SL
Sbjct: 641 VERHFSLGELKELFSL 656
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 172/560 (30%), Positives = 282/560 (50%), Gaps = 71/560 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 441
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 155 LSNILRPHQREGVRFMYEC-VEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESK 213
Query: 442 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 493
I +A+VV+P +L+ +W KE T + + +E T Q+ +
Sbjct: 214 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKE--NTIRVLEQFSMTSSKLG 271
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
VLL +Y+ R + E G +I DEGH +KN ++L+ +
Sbjct: 272 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 319
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + + E++
Sbjct: 320 KTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERK 379
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
+EL + +RR N++ + L K EM++ ++LT+ Q QLY F
Sbjct: 380 KAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPIKFEMVICVKLTAIQLQLYTNF 431
Query: 674 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPED 724
LNS+ V + + LA +T LKKIC HP L+ ++ A E + ++L
Sbjct: 432 LNSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIEAKEKGFENSQNVLP--- 488
Query: 725 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 783
++ K+ E S K + +L + G++ V++ S + L+
Sbjct: 489 -----------SNYKPKEICPEW----SGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLD 533
Query: 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADR 842
L ++ + Y F+R+DGT R K+V+ F + D +F+L+S+ GG GL L A+R
Sbjct: 534 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANR 593
Query: 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
+ + DP WNP+ D Q++ R +R GQKK +YRL+ GT+EEKI ++Q K L T +
Sbjct: 594 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIID 653
Query: 903 HKEQI-RYFSQQDLRELLSL 921
+ E ++F++ DL++L S
Sbjct: 654 NNESSEKHFTRDDLKDLFSF 673
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
melanogaster GN=okr PE=1 SV=1
Length = 784
Score = 240 bits (612), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 170/564 (30%), Positives = 282/564 (50%), Gaps = 79/564 (14%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 441
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210
Query: 442 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 493
I +A+VV+P +L+ +W KE T + + +E T Q+ +
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKE--NTIRALEQFSMTSARLG 268
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
VLL +Y+ R + E G +I DEGH +KN ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + ++E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQ 376
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
+EL + +RR N++ + L K EM++ +LT+ Q +LY F
Sbjct: 377 RAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTAIQLELYTNF 428
Query: 674 LNSEIVLSAFDG-------SPLAALTILKKICDHPLL----LTKR--AAEDVLDGMDSML 720
L S+ V + + LA +T LKKIC HP L LT R E+ + + S
Sbjct: 429 LKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNY 488
Query: 721 NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTR 779
P+D + +S K + +L + EG++ V++ S
Sbjct: 489 KPKDL----------------------NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYT 526
Query: 780 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLT 838
+ L+L ++ + Y F+R+DGT R K+V+ F + + + +F+L+S+ GG GL L
Sbjct: 527 QTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLI 586
Query: 839 KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 898
A+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L
Sbjct: 587 GANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSS 646
Query: 899 TATEHKEQI-RYFSQQDLRELLSL 921
T ++ E ++F++ DL++L +
Sbjct: 647 TIIDNNESAEKHFTRDDLKDLFTF 670
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
willistoni GN=okr PE=3 SV=1
Length = 784
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 174/572 (30%), Positives = 280/572 (48%), Gaps = 94/572 (16%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSRL--- 443
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 149 LSNILRPHQREGVRFMYDC-VEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECK 207
Query: 444 --IKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 492
I +A++V+P +L+ +W KE T + + +E T Q+ + +
Sbjct: 208 PTITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--DTIKALEQFSMNTSTRL 265
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
VLL +Y+ R + + +E G +I DEGH +KN ++L+
Sbjct: 266 GTPVLLISYETFR-----IYANILCQNEVG-------MVICDEGHRLKNSDNLTYQALMG 313
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ + R+++SGTPIQN+L E ++L NF PE+LG FK +E PIL+G + + D+E+
Sbjct: 314 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKER 373
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
+EL + +RR N++ + L K EM++ +RLTS Q + Y
Sbjct: 374 ERALEKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVICVRLTSVQLEFYTN 425
Query: 673 FLNSEIVLSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSM----- 719
FL S+ V + + LA +T LKK+C HP L+ K A D G ++
Sbjct: 426 FLKSDKVRRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARD--KGFENSQNILP 483
Query: 720 -------LNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNV 772
LNPE + L +A + D DK V
Sbjct: 484 TNYKPKDLNPELSGKFMLLDFMLATIRANSD-------------------DK-------V 517
Query: 773 LIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQV 830
++ S + L+L ++ + Y F+R+DGT R K+V+ F E D +F+L+S+
Sbjct: 518 VLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFNDPENDCF-LFMLSSKA 576
Query: 831 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 890
GG GL L A+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q
Sbjct: 577 GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQ 636
Query: 891 IFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 921
K L T ++ E ++F++ DL++L S
Sbjct: 637 THKKSLSSTIIDNNESAEKHFTRDDLKDLFSF 668
>sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1
SV=1
Length = 898
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 166/531 (31%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 416 GGILGDDMGLGKTMQICGFLAGLFHS-----RLIKRALVVAPKTLLSHWIKEL------- 463
G I+ D+MGLGKT+Q + L RLI + ++V P +L+++W EL
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPN 389
Query: 464 --TAVGLSAKIREYFGTCVKTRQYELQYVLQDKG------VLLTTYDIVRNNSKSLRGSS 515
T + + K + G T + Q +G VL+ +Y+ +R N L+ +
Sbjct: 390 TLTPLAVDGK-KSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCN 448
Query: 516 FISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWA 575
M+ DEGH +KN + +L I R+I+SGTPIQN+L E +A
Sbjct: 449 V------------GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFA 496
Query: 576 LFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLK 635
L +F P LLG F++ +E PILRG D A D+E G A ++L + + +RR
Sbjct: 497 LLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRR-T 555
Query: 636 NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE----IVLSAFDGSPLAAL 691
N++ + L K E ++++ L Q +LY + S +V PL A+
Sbjct: 556 NDIL-------AKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRAI 608
Query: 692 TILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNI 751
ILKK+C+HP LL +D E + ++ D Q ++
Sbjct: 609 GILKKLCNHPNLLNFEDEF------------DDEDDLELPDDYNMPGSKARDVQTKY--- 653
Query: 752 SCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 810
S K S + L K+ E + +++ S + L+LI++ K Y +R+DGT + R K
Sbjct: 654 SAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQK 713
Query: 811 IVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 869
+V+ F + + IFLL+S+ GG G+ L A+R+I++DP WNP+ D Q++ R +R GQKK
Sbjct: 714 LVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKK 773
Query: 870 DVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELL 919
D +YR ++ GT+EEKI+++Q K L + KE + R FS +LR+L
Sbjct: 774 DCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLF 824
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 184/582 (31%), Positives = 290/582 (49%), Gaps = 100/582 (17%)
Query: 385 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 442
+Y+ G+I + Q G+ W+ L + + GIL D+MGLGKT+Q FL+ L HS
Sbjct: 383 SYIKGGEIRDF----QLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQ 438
Query: 443 ------LIKRALVVAPKTLLSHWIKELTAVGLS------AKIREY-FGTCVKTRQYELQY 489
++ + V A + L++W +L ++ + A IREY F +R+ +
Sbjct: 439 HGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKF-- 496
Query: 490 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 549
+LLTTY+ + + + L ++ W Y+ +DE H +KN + ++
Sbjct: 497 -----NILLTTYEYILKDKQEL------------NNIRWQYLAIDEAHRLKNSESSLYET 539
Query: 550 LLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALD 609
L + +A+R++I+GTP+QNNLKEL +L NF P F + EL D+ +
Sbjct: 540 LSQFRTANRLLITGTPLQNNLKELASLVNFLMPGK------FYIRDELNF----DQPNAE 589
Query: 610 REKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQL 669
+E+ I ++L+ER+QP+ LRRLK +V +L K+E I+ + L+ Q +
Sbjct: 590 QERDI-----RDLQERLQPFILRRLKKDV--------EKSLPSKSERILRVELSDMQTEW 636
Query: 670 YEAFL--NSEIVLSAFDG----SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 723
Y+ L N + DG S L + LKK+ +HP L AAE + M + E
Sbjct: 637 YKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPG-AAEKWM--MGRKMTRE 693
Query: 724 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 783
D + M+ S K+ + LL +L +GH VLIFSQ +MLN
Sbjct: 694 DTLRG--IIMN-----------------SGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLN 734
Query: 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKAD 841
++ E + +GY + R+DGT AS R ++ F D +P +FLL+++ GGLG+ L AD
Sbjct: 735 ILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPD-SPDFVFLLSTRAGGLGINLNTAD 793
Query: 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLF 897
VI+ D WNP D Q++ RA+RIGQK V VYR ++ TVEE I RK I + +
Sbjct: 794 TVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAII 853
Query: 898 KTATEHKEQIRYFSQQDLRELLSLPKQG----FDVSLTQQQL 935
K + + D +EL ++ K G F + Q++L
Sbjct: 854 SLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKL 895
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 165/538 (30%), Positives = 269/538 (50%), Gaps = 87/538 (16%)
Query: 361 VLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILG 420
++D Y +D + + S SG Y Q +GL WL SLH GIL
Sbjct: 162 IVDTYQEDIFVSESPSFVKSGKLRDY-------------QVQGLNWLISLHENKLSGILA 208
Query: 421 DDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTC 479
D+MGLGKT+Q FL L + + I+ L++ PK+ L +W +E + + G
Sbjct: 209 DEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDK 268
Query: 480 VKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 538
+L+ + VL+T+Y++V +L+ + W Y+++DE H
Sbjct: 269 DTRADIVRNIILEARFDVLITSYEMVIREKNALKRLA------------WQYIVIDEAHR 316
Query: 539 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 598
IKN + ++ + S +R++I+GTP+QNNL ELWAL NF P++ GD++ F E +E
Sbjct: 317 IKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE-- 374
Query: 599 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 658
+ N + D+E V ++L + P+ LRR+K +V +L K E V
Sbjct: 375 --QNNSEQ--DQE-----IVIQQLHSVLNPFLLRRVKADV--------EKSLLPKIETNV 417
Query: 659 WLRLTSCQRQLYEAFLNSEIVLSAFDGSP---------LAALTILKKICDHPLLLTKRAA 709
++ +T Q Q Y++ L +I A +G+ L + L+K C+HP L
Sbjct: 418 YVGMTDMQIQWYKSLLEKDI--DAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL------ 469
Query: 710 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 769
+G AE + D E S K+ + LL +L +G
Sbjct: 470 ---FEG------------AEPGPPYTTD--------EHLIFNSGKMIILDKLLKRLKEKG 506
Query: 770 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTS 828
VLIFSQ ++L+++++ + +++ RIDG+T +R++ ++++ + + +FLLT+
Sbjct: 507 SRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTT 566
Query: 829 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
+ GGLG+ L AD VI+ D WNP D Q++DRA+RIGQKK V VYR +T +EEK+
Sbjct: 567 RAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKV 624
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 169/565 (29%), Positives = 280/565 (49%), Gaps = 80/565 (14%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 442
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q L
Sbjct: 145 LSNVLRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCK 203
Query: 443 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 492
I +A++V+P +L+ +W KE T + + +E T Q+ + +
Sbjct: 204 PTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--DTTRALEQFAMNTATRC 261
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
VLL +Y+ R L E G +I DEGH +KN ++L+
Sbjct: 262 GTPVLLISYETFR-----LYAHILCKTEVG-------MVICDEGHRLKNSDNLTYQALMG 309
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ + R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D E+
Sbjct: 310 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAER 369
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
+ +EL + +RR N++ + L K EM+V ++LT Q Q+Y
Sbjct: 370 QRALQKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVVCVKLTPVQLQIYTN 421
Query: 673 FLNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPE 723
FL S+ V + + LA +T LKK+C+HP L+ ++ A E + ++L P
Sbjct: 422 FLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQNVLPP- 480
Query: 724 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-----EGHNVLIFSQT 778
+ KD ++ ++S LLD ++ V++ S
Sbjct: 481 -------------NYKPKD--------VNPELSGKFMLLDFMLAAIRANSDDKVVLISNY 519
Query: 779 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTL 837
+ L+L ++ + Y ++R+DGT R K+V+ F + +F+L+S+ GG GL L
Sbjct: 520 TQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNL 579
Query: 838 TKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLF 897
A+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L
Sbjct: 580 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 639
Query: 898 KTATEHKEQI-RYFSQQDLRELLSL 921
T ++ E ++F++ DL++L S
Sbjct: 640 STIIDNNESSEKHFTRDDLKDLFSF 664
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 172/561 (30%), Positives = 280/561 (49%), Gaps = 71/561 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 442
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206
Query: 443 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 492
I + ++V+P +L+ +W KE T + + +E T Q+ + +
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--NTVRALEQFSMNASTRL 264
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
VLL +Y+ R + E G +I DEGH +KN ++L+
Sbjct: 265 GTPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMG 312
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ + R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D+E+
Sbjct: 313 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKER 372
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
+EL + + +RR N++ + L K EM++ +LT Q QLY
Sbjct: 373 DRALEKTQELIKLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTPIQLQLYTN 424
Query: 673 FLNSEIVLSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSMLNPED 724
FL S+ V + + LA +T LKK+C HP L+ K AAE+ G ++ N
Sbjct: 425 FLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAEE--KGFENSQNILP 482
Query: 725 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 783
K E + +S K + +L + G++ V++ S + L+
Sbjct: 483 INYNPK--------------GEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLD 528
Query: 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKAD 841
L ++ + Y F+R+DGT R K+V+ F E D +F+L+S+ GG GL L A+
Sbjct: 529 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLNLIGAN 587
Query: 842 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 901
R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T
Sbjct: 588 RLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII 647
Query: 902 EHKEQI-RYFSQQDLRELLSL 921
++ E ++F++ DL++L S
Sbjct: 648 DNNESAEKHFTRDDLKDLFSF 668
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 166/560 (29%), Positives = 284/560 (50%), Gaps = 71/560 (12%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 441
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210
Query: 442 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 493
I +A+VV+P +L+ +W KE T + + +E T Q+ +
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKE--NTIRALEQFSMTSSRLG 268
Query: 494 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 553
VLL +Y+ R + E G +I DEGH +KN ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316
Query: 554 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 613
+ R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + + E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEGERQ 376
Query: 614 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 673
+EL + +RR N++ + L K EM++ +LTS Q +LY F
Sbjct: 377 RAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTSIQLELYTNF 428
Query: 674 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPED 724
L S+ V + + LA +T LKKIC HP L+ ++ A E + ++L P +
Sbjct: 429 LKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKITAREKGFENSQNVL-PSN 487
Query: 725 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 783
+ ++ + +S K + +L + +G++ V++ S + L+
Sbjct: 488 Y-----------------NTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLD 530
Query: 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADR 842
L ++ + Y F+R+DGT R K+V+ F + + + +F+L+S+ GG GL L A+R
Sbjct: 531 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANR 590
Query: 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
+ + DP WNP+ D Q++ R +R GQKK +YR++ G++EEKI ++Q K L T +
Sbjct: 591 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIID 650
Query: 903 HKEQI-RYFSQQDLRELLSL 921
+ E ++F++ DL++L +
Sbjct: 651 NNESAEKHFTRDDLKDLFTF 670
>sp|Q9H4L7|SMRCD_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Homo
sapiens GN=SMARCAD1 PE=1 SV=2
Length = 1026
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 269/520 (51%), Gaps = 54/520 (10%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q + + +D V++TTY+ ++S
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSS----- 611
Query: 514 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
DD +++ +Y I DEGH++KN + R + L+ I + +R++++GTP+QN
Sbjct: 612 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
NL EL +L NF P + + + + D+ ++ ++RI A ++ I+P
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHA-----KQIIKP 717
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 685
+ LRR+K EV + L K + I ++ Q QLY N I +
Sbjct: 718 FILRRVKEEVLKQ--------LPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT 769
Query: 686 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML---------NP----EDAALAEKLA 732
+ L+K+ +HPLL + + L M ++ NP ED +
Sbjct: 770 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 829
Query: 733 MHI--ADVAEKDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788
+H+ ++FQ D I S K + +L +L +G V++FSQ ML++++
Sbjct: 830 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 889
Query: 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848
+ +++LR+DG T+ S+R+ ++++F +FLL+++ GGLG+ LT A+ VI+ D
Sbjct: 890 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 949
Query: 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
NP D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 950 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 236 bits (601), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 174/562 (30%), Positives = 281/562 (50%), Gaps = 74/562 (13%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 442
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q L
Sbjct: 145 LSNVLRPHQREGVRFMYEC-VEGKRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCK 203
Query: 443 -LIKRALVVAPKTLLSHWIKELTAV--GLSAKIREYFGTCVKTRQYELQYVLQDKG---- 495
I +A+VV+P +L+ +W KE T G + G+ +T + Q+ +
Sbjct: 204 PTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGT 263
Query: 496 -VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 554
VLL +Y+ R L E G +I DEGH +KN ++L+ +
Sbjct: 264 PVLLISYETFR-----LYAHILCKTEVG-------MVICDEGHRLKNSDNLTYQALMGLK 311
Query: 555 SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRI 614
+ R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D E+
Sbjct: 312 TKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERER 371
Query: 615 GSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL 674
+EL + +RR N++ + L K EM+V +LT+ Q Q+Y FL
Sbjct: 372 ALLKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVVCAKLTAVQLQIYTNFL 423
Query: 675 NSEIVLSAF----DGSPLAAL---TILKKICDHP-LLLTKRAAEDVLDGMDSMLNPEDAA 726
S+ V + + + L AL T LKK+C+HP L+ K AA + G ++ N A
Sbjct: 424 KSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAARE--KGFENSQNVLPAN 481
Query: 727 LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-----EGHNVLIFSQTRKM 781
K +I+ ++S LLD ++ V++ S +
Sbjct: 482 YKPK-------------------DINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQT 522
Query: 782 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKA 840
L+L ++ + Y ++R+DGT R K+V+ F + +F+L+S+ GG GL L A
Sbjct: 523 LDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGA 582
Query: 841 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 900
+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L T
Sbjct: 583 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI 642
Query: 901 TEHKEQI-RYFSQQDLRELLSL 921
++ E + ++F++ DL++L S
Sbjct: 643 IDNNESVEKHFTRDDLKDLFSF 664
>sp|Q9VL72|SMRCD_DROME SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Drosophila melanogaster GN=Etl1 PE=1 SV=1
Length = 844
Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/519 (30%), Positives = 265/519 (51%), Gaps = 44/519 (8%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 451
G L +Q GL WL +H Q GIL D+MGLGKT+Q+ FLA L + L + A L+V
Sbjct: 286 GLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVV 345
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV---LQDKGVLLTTYDIVRNNS 508
P + L +W E++ + +Y G+ + R+ ++ VLLTTY IV +
Sbjct: 346 PSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTP 405
Query: 509 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
+ + DY+I DE H++KN +TQR +L+ I + RI+++GTP+QN
Sbjct: 406 EERKMFRVCK---------LDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQN 456
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
NL EL +L F P+ K ++ L +G D + + + ++P
Sbjct: 457 NLLELISLLCFVMPKFFA--KSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKP 514
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL-----NSEIVLSAF 683
+ LRRLK +V L KK ++ + ++S Q+ Y + N V S+
Sbjct: 515 FVLRRLKKDVLK--------NLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSS 566
Query: 684 DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML-------NPEDAALAEKLAM--- 733
+ + +A + +++I +HPLL+ + L G L + + E+LA+
Sbjct: 567 ERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSD 626
Query: 734 -HIADVAEKDDFQEQH--DNISC---KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 787
+ + K +F + DN+ C K ++ +LL KL EGH VL+FSQ ML++++E
Sbjct: 627 FQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEE 686
Query: 788 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVD 847
+ + + F R+DG T + R ++ DF D +FLL+++ GG+G+ LT AD ++ D
Sbjct: 687 YLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHD 746
Query: 848 PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
+NP D Q+ DR +R+GQ++ V +YRL++ T+EE I
Sbjct: 747 IDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGI 785
>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
persimilis GN=okr PE=3 SV=1
Length = 782
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 170/566 (30%), Positives = 280/566 (49%), Gaps = 81/566 (14%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 442
+ N+L PHQREG+R+++ +GK G I+ D+MGLGKT+Q + L
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206
Query: 443 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 492
I + ++V+P +L+ +W KE T + + +E T Q+ + +
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--NTVRALEQFSMNASTRL 264
Query: 493 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 552
VLL +Y+ R + E G +I DEGH +KN ++L+
Sbjct: 265 GTPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMG 312
Query: 553 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 612
+ + R+++SGTPIQN+L E ++L NF PE+LG FK +E ILRG + + D+E+
Sbjct: 313 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKER 372
Query: 613 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 672
+EL + + +RR N++ + L K EM++ +LT Q QLY
Sbjct: 373 DRALEKTQELIKLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTPIQLQLYTN 424
Query: 673 FLNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSML--- 720
FL S+ V + + LA +T LKK+C HP L+ ++ A E + ++L
Sbjct: 425 FLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAGEKGFENSQNILPIN 484
Query: 721 -NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQT 778
NP+ E + +S K + +L + G++ V++ S
Sbjct: 485 YNPKG---------------------EINPELSGKFKLLDFMLAAIRAHGNDKVVLISNY 523
Query: 779 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLT 836
+ L+L + + Y F+R+DGT R K+V+ F E D +F+L+S+ GG GL
Sbjct: 524 TQTLDLFELLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLN 582
Query: 837 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 896
L A+R+ + DP WNP+ D Q++ R +R GQKK +YRL+ G++EEKI ++Q K L
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642
Query: 897 FKTATEHKEQI-RYFSQQDLRELLSL 921
T ++ E ++F++ DL++L S
Sbjct: 643 SSTIIDNNESAEKHFTRDDLKDLFSF 668
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Bos
taurus GN=SMARCAD1 PE=3 SV=2
Length = 1028
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 268/520 (51%), Gaps = 54/520 (10%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA L+ L+V P +
Sbjct: 499 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 558
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + K+ Y+G+ + +Q Y + ++ V++TTY+ ++S
Sbjct: 559 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAISSS----- 613
Query: 514 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
DD +++ +Y I DEGH++KN + R + L+ I + +R++++GTP+QN
Sbjct: 614 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 664
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
NL EL +L NF P + + + + D+ ++ ++RI A ++ I+P
Sbjct: 665 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHA-----KQIIKP 719
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 685
+ LRR+K EV + L K + I ++ Q QLY N I +
Sbjct: 720 FILRRVKEEVLKQ--------LPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNT 771
Query: 686 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML---------NP----EDAALAEKLA 732
+ L+K+ +HPLL + + L M ++ NP ED +
Sbjct: 772 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 831
Query: 733 MHI--ADVAEKDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788
+H+ ++FQ D I S K + +L +L +G V++FSQ ML++++
Sbjct: 832 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891
Query: 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848
+ +++LR+DG T+ S+R+ ++++F +FLL+++ GGLG+ LT A+ VI+ D
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951
Query: 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
NP D Q+ DR +R+GQ K+V+V +L+ GT+EE + +
Sbjct: 952 DCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLK 991
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 252/501 (50%), Gaps = 75/501 (14%)
Query: 399 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 457
+Q EGL WL C+ IL D+MGLGKT+Q FL+ LFH +L L+V P + L+
Sbjct: 487 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 458 HWIKELTAVGLSAKIREYFGTCVK---TRQYELQYVLQDK---GVLLTTYDIVRNNSKSL 511
W +E + Y G + R+YE + + L+TTY+I+ + K++
Sbjct: 547 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 605
Query: 512 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 571
GS W ++ +DE H +KN + K+L++ S HR++I+GTP+QN+LK
Sbjct: 606 LGS-----------INWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 654
Query: 572 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 631
ELW+L +F PE F E +E + H RE S L + ++P+ L
Sbjct: 655 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 698
Query: 632 RRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSAFDGSPLA 689
RR+K +V +L K E I+ + +++ Q+Q Y+ L N + + GS
Sbjct: 699 RRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSG 750
Query: 690 ALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 746
L I LKK C+H L+ + +G + +L +L
Sbjct: 751 FLNIVMELKKCCNHCYLIKPPEENERENGQEILL-----SLIRS---------------- 789
Query: 747 QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 806
S K+ + LL +L G+ VLIFSQ +ML+++ E + K Y F R+DG+ K
Sbjct: 790 -----SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 807 DRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 865
R + ++ F +G FLL+++ GGLG+ L AD V++ D WNP D Q+ RA+RI
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 866 GQKKDVVVYRLMTCGTVEEKI 886
GQKK V +YRL+T GTVEE+I
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEI 925
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 171/508 (33%), Positives = 251/508 (49%), Gaps = 76/508 (14%)
Query: 393 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVA 451
G L +Q +GL WL C+ IL D+MGLGKT+Q FL LF L L V
Sbjct: 525 GLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVV 584
Query: 452 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTR----QYELQYVLQDK---GVLLTTYDIV 504
P + ++ W +E + Y G +K+R QYE Q+ + +LTTY+IV
Sbjct: 585 PLSTMTAWQREFDLWAPDMNVVTYLGD-IKSRELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 505 RNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 564
L+ F+ W +++DE H +KN + KSL E + HR++I+GT
Sbjct: 644 ------LKDKQFLGT------LQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGT 691
Query: 565 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624
P+QN+LKELWAL +F P+ + W E +E+ DK L +
Sbjct: 692 PLQNSLKELWALLHFIMPDKF--DTW--ENFEVQHGNAEDKGYT------------RLHQ 735
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSA 682
+++PY LRR+K +V +L K E I+ + +TS Q+Q Y+ L N + +
Sbjct: 736 QLEPYILRRVKKDV--------EKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKG 787
Query: 683 FDGSPLAALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVA 739
GS L I LKK C+H L+ R +E L G+ +D AL L
Sbjct: 788 KRGSTSTFLNIVIELKKCCNHAALI--RPSEFELMGLQ-----QDEALQTLLKG------ 834
Query: 740 EKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRI 799
S K+ + LL +L GH VLIFSQ +ML+++ + + + + F R+
Sbjct: 835 ------------SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRL 882
Query: 800 DGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 858
DG+ K R + ++ F EG FLL+++ GGLG+ L AD VI+ D WNP D Q+
Sbjct: 883 DGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQA 942
Query: 859 VDRAYRIGQKKDVVVYRLMTCGTVEEKI 886
RA+RIGQK V +YRL+T +VEE+I
Sbjct: 943 QARAHRIGQKNQVNIYRLVTARSVEEQI 970
>sp|D3Z9Z9|SMRCD_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Rattus
norvegicus GN=Smarcad1 PE=3 SV=1
Length = 1024
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 152/520 (29%), Positives = 263/520 (50%), Gaps = 54/520 (10%)
Query: 396 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 455
L P+Q+ GL WL +H G GIL D+MGLGKT+Q FLA LF L+V P +
Sbjct: 495 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPAST 554
Query: 456 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 513
+ +W++E+ + + Y+G+ + +Q + + +D V++TTY+ ++S
Sbjct: 555 IDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSS----- 609
Query: 514 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 568
DD +++ +Y I DEGH++KN + R + L+ I + +R++++GTP+QN
Sbjct: 610 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN 660
Query: 569 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 628
NL EL +L NF P + + + + D+ ++ ++RI A ++ I+P
Sbjct: 661 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHA-----KQIIKP 715
Query: 629 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 685
+ LRR+K EV L K + I ++ Q QLY N I +
Sbjct: 716 FILRRVKEEVL--------KLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNT 767
Query: 686 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDF- 744
+ L+K+ +HPLL + + L M ++ E + D+ DF
Sbjct: 768 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 827
Query: 745 ------QEQHDNI----------SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 788
Q QH N S K + +L +L +G V++FSQ ML++++
Sbjct: 828 LHVLCKQYQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVL 887
Query: 789 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 848
+ +++LR+DG T+ S+R+ ++++F +FLL+++ GGLG+ LT A+ VI+ D
Sbjct: 888 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 947
Query: 849 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 888
NP D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 948 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 987
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 166/545 (30%), Positives = 273/545 (50%), Gaps = 86/545 (15%)
Query: 392 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKRALVV 450
+G L +Q GL W+ SL+ GIL D+MGLGKT+Q + L+ + I LV+
Sbjct: 466 VGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVI 525
Query: 451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 510
P + +++W E S Y GT + + Q + + VLLTTY+ +
Sbjct: 526 VPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI------ 579
Query: 511 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH------RIIISGT 564
++ S +S W +MI+DEGH +KN A+S L +H R+I++GT
Sbjct: 580 IKDKSLLSKHD------WAHMIIDEGHRMKN-----AQSKLSFTISHYYRTRNRLILTGT 628
Query: 565 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 624
P+QNNL ELWAL NF P++ K F++ + P + L+ + + + L +
Sbjct: 629 PLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHK 688
Query: 625 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSA 682
++P+ LRRLK EV E D L K E ++ +L+ Q+QLY+ L N+ V +
Sbjct: 689 VLRPFLLRRLKKEV--EKD------LPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAG 740
Query: 683 FDGSPLAAL-------TILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 735
+G+ + L+KIC+HP V D ++ ++NP
Sbjct: 741 TEGATKGGIKGLNNKIMQLRKICNHPF---------VFDEVEGVVNPSRG---------- 781
Query: 736 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGS 791
+ ++ +++ LLD+++P+ GH VL+F Q ++++++++ +
Sbjct: 782 ------------NSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRM 829
Query: 792 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAW 850
K K++R+DG+TK +R +++N F D FLL+++ GGLGL L AD VI+ D W
Sbjct: 830 KDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDW 889
Query: 851 NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTAT 901
NP D Q+ DRA+RIGQK +V + RL+T +VEE I + ++ + G F +
Sbjct: 890 NPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKS 949
Query: 902 EHKEQ 906
+EQ
Sbjct: 950 TAEEQ 954
>sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1
PE=1 SV=1
Length = 764
Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 164/522 (31%), Positives = 263/522 (50%), Gaps = 64/522 (12%)
Query: 387 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKR 446
+ P G L +Q +G++WL SL G GIL D MGLGKT+Q GFL+ L + L
Sbjct: 193 LCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGP 252
Query: 447 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG----VLLTTYD 502
LV+AP + LS+W E+ S Y G + + +++ + G +++T+Y+
Sbjct: 253 YLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYE 312
Query: 503 IVRNNSKS-LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
+ N++K LR W Y+++DEGH +KN + + L + +++++
Sbjct: 313 VAMNDAKRILRHYP------------WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLL 360
Query: 562 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
+GTP+QNNL ELW+L NF P++ + F+ ++ N+ + EKR V+K
Sbjct: 361 TGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK- 419
Query: 622 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL- 680
L ++P+ LRR+K +V +L +K E+I++ +T Q++ E +N+ +
Sbjct: 420 LHGILRPFILRRMKCDV--------ELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAH 471
Query: 681 ---SAFDGS----PLAALTI-LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLA 732
+A G L L I L+K C+HP LL + +DG S L P + +
Sbjct: 472 LGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQ-----IDG--SYLYPPVEEIVGQCG 524
Query: 733 MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK 792
K + LL +L H VLIFSQ K+L+++ K
Sbjct: 525 ---------------------KFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEK 563
Query: 793 GYKFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 851
G++ RIDG+ K +R + + DF E IFLL+++ GGLG+ LT AD I+ D WN
Sbjct: 564 GFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWN 623
Query: 852 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 893
P D Q++DR +RIGQ K V VYRL T ++E ++ ++ K
Sbjct: 624 PQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSK 665
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,733,856
Number of Sequences: 539616
Number of extensions: 18055839
Number of successful extensions: 43231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 41102
Number of HSP's gapped (non-prelim): 1558
length of query: 1060
length of database: 191,569,459
effective HSP length: 128
effective length of query: 932
effective length of database: 122,498,611
effective search space: 114168705452
effective search space used: 114168705452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)