Query 001527
Match_columns 1060
No_of_seqs 660 out of 6886
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 15:52:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001527.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_pdb/001527hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 651.6 43.6 585 15-616 4-750 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 519.6 36.3 511 57-594 29-561 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 474.0 46.5 548 57-607 2-624 (680)
4 4eco_A Uncharacterized protein 1.0 1 1 463.7 26.1 486 22-586 29-602 (636)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 462.4 42.7 487 95-588 34-564 (606)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 461.9 45.1 484 92-588 22-564 (844)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 460.4 39.1 484 94-588 32-562 (606)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 455.8 32.9 492 20-590 266-846 (876)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 453.1 34.0 493 60-568 15-566 (844)
10 1ziw_A TOLL-like receptor 3; i 1.0 1 1 446.9 47.1 516 72-596 7-585 (680)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=651.55 Aligned_cols=585 Identities=32% Similarity=0.461 Sum_probs=426.2
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCC---CCC--
Q ss_conf 732999947799999999716689998657888788889999998622189339972699915889865447---421--
Q 001527 15 SSVGQLPSQDILALLEFKKGIKNDPTGFVLNSWNEESIDFDGCPSSWNGIVCNGGNVAGVVLDNLGLSAAAD---LSV-- 89 (1060)
Q Consensus 15 ~~~~~~~~~~~~aLl~~k~~~~~~p~~~~l~sW~~~~~~~~~~~c~w~gv~C~~~~~~~~~l~~~~~~~~~~---~~~-- 89 (1060)
+..++....|+.||++||+++. || . .+++|.. +.+||+|.||+|+ +++|+.+++.+..+.+. +++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~-~-~l~~W~~-----~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l 73 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DK-N-LLPDWSS-----NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSL 73 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CT-T-SSTTCCT-----TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CC-C-CCCCCCC-----CCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf 7656687899999999996678-96-2-1468789-----9987688413878--9927898778998677557669657
Q ss_pred ----------------------CCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCC
Q ss_conf ----------------------14998874998768845334898--85799997699757984466573222-456346
Q 001527 90 ----------------------FSNLSMLVKLSMSNNSISGVIPD--NIGDFKSLEFLDVSDNLFSSSLPSGI-GKLESL 144 (1060)
Q Consensus 90 ----------------------~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L 144 (1060)
+.++++|++|+|++|.+.|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 31680224678688867870332457889989898985787078967872788999898968826774797785638899
Q ss_pred CEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 72003354347645776---667775569986488799999810139897668991158464347822214799999983
Q 001527 145 QNLSLAGNNFSGLIPDS---VSGLVSIQSLDLSHNSFSGSLPPALTRLNNLVYLNLSSNGFSKRIPRGFELILGLQVLDF 221 (1060)
Q Consensus 145 ~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (1060)
++|+|++|++++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+++.+|. ++.+++|++|++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEEC
T ss_conf 9898979835885871556643589889898978803465784--5478689898928827887711-126999998979
Q ss_pred CCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCC---------------------CCCCCCCCCEEECCCCCCCCCC
Q ss_conf 1896876685555403888700146884456887676---------------------7786664449985578563657
Q 001527 222 HGNKLDGHLDGEFFLLTNASHIDFSGNMFVGSSSQKF---------------------LPGLSQSVQYLNLSLNQLTGSL 280 (1060)
Q Consensus 222 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~---------------------~~~~~~sL~~L~Ls~N~l~~~~ 280 (1060)
++|.+++..|..|..+++|++|++++|.+.+..+... +.....+|+.|++++|.+++..
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 48858781657774488889898988866571672436878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCC-C-CCCCCCCCEEECCCCCCCCCCCCCHHCCCC--------------------
Q ss_conf 898644489998799842784645789-8-668788659984388276668931010488--------------------
Q 001527 281 VNGGELQLFENLKVLDLSYNQLTGELP-G-FNFVYELQVLKLSNNRFSGFIPNDLLKGDS-------------------- 338 (1060)
Q Consensus 281 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~-------------------- 338 (1060)
| ..+..+++|+.|++++|++++.+| . +..+++|++|++++|++.+.+|..+ ....
T Consensus 311 p--~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 311 P--PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp C--GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH-HHHTTTCSEEECCSSEEEEECCTT
T ss_pred C--HHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH-HHHHCCCCEEECCCCCCCCCCCHH
T ss_conf 3--6775587766778978852573797887248888788484784376230989-863227719986278747876766
Q ss_pred ------CCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCC---CCCEEECCCCCCCCCCCCCCCC-CC
Q ss_conf ------7779598778815332572101--4875898568757466898989---9878974377254324422378-96
Q 001527 339 ------LLLTDLDLSANNLSGSVSMILS--TNLHMLNLSSNGLTGELPLLTG---SCAVLDLSNNQFEGNLSRILKW-GN 406 (1060)
Q Consensus 339 ------~~L~~L~Ls~N~l~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~Ls~N~l~~~~~~~~~~-~~ 406 (1060)
..|+.|++++|.+.+..|..+. ++|+.|++++|.+++.+|..+. +++.|++++|.+.+.+|..+.. ++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCC
T ss_conf 65332477618989778465424877756898798989588466854677744998898989788154718978828777
Q ss_pred CCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 57898506730234899876658898687567867555011000358875881588646582010122687765677268
Q 001527 407 IEYLDLSRNHLTGSIPEETPQFLRLNHLNLSHNSLSSSLPKVIIQYQKLRVLDLSFNHLDGPFLTNLLNSSTLQELHLAD 486 (1060)
Q Consensus 407 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 486 (1060)
|++|++++|++++.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+.++++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred CEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 32999019951375887881699899897539951896876885689999898978943374887770889899898988
Q ss_pred CCCCCCCCCC----------------------------------------------------------------------
Q ss_conf 4023338999----------------------------------------------------------------------
Q 001527 487 NLLTGVLDFS---------------------------------------------------------------------- 496 (1060)
Q Consensus 487 N~l~~~~~~~---------------------------------------------------------------------- 496 (1060)
|.++|.+|..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 84688279578604212232013454211113444322223322210013556323200232110011331004627433
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCC
Q ss_conf 78898875898468702223584225988876897789825002685663789998586567726578899974--5786
Q 001527 497 PPSVSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCLAGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLP--NSLE 574 (1060)
Q Consensus 497 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~--~~l~ 574 (1060)
+..+++|+.|||++|+++|.+|..+++++.|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+. .+|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 40335665797858801555877884141578784868803887896784777899898978802386886775788789
Q ss_pred EEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5437678572124721--22799964247999999999999999
Q 001527 575 TFNVSYNDFSGAVPEN--LRKFPSSSFYPGNSKLSFPGGAPGSG 616 (1060)
Q Consensus 575 ~l~ls~N~~~g~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1060)
.+|+++|+++|.||+. |.+|+..+|.+|+++||.|.. +|..
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred EEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCC
T ss_conf 787968815560899601024897775698321088776-7888
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=519.61 Aligned_cols=511 Identities=30% Similarity=0.408 Sum_probs=446.7
Q ss_pred CCCCCC-EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 998622-18933997269991588986544742114998874998768845334---89885799997699757984466
Q 001527 57 CPSSWN-GIVCNGGNVAGVVLDNLGLSAAADLSVFSNLSMLVKLSMSNNSISGV---IPDNIGDFKSLEFLDVSDNLFSS 132 (1060)
Q Consensus 57 ~~c~w~-gv~C~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~Ls~n~l~~ 132 (1060)
--.+|. +..|+. +.++.++ . .+++.|+|+++.+.|. +|..+.+++.|+.++++.|.+.
T Consensus 29 ~l~~W~~~~~~C~--w~gv~C~-~--------------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~- 90 (768)
T 3rgz_A 29 LLPDWSSNKNPCT--FDGVTCR-D--------------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN- 90 (768)
T ss_dssp SSTTCCTTSCGGG--STTEEEE-T--------------TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-
T ss_pred CCCCCCCCCCCCC--CCCEEEC-C--------------CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-
T ss_conf 1468789998768--8413878-9--------------92789877899867755766965731680224678688867-
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 5732224563467200335434764577--66677755699864887999998101-39897668991158464347822
Q 001527 133 SLPSGIGKLESLQNLSLAGNNFSGLIPD--SVSGLVSIQSLDLSHNSFSGSLPPAL-TRLNNLVYLNLSSNGFSKRIPRG 209 (1060)
Q Consensus 133 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~ 209 (1060)
.+|..|+.+++|++|+|++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|..
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 87033245788998989898578707896787278899989896882677479778563889998989798358858715
Q ss_pred ---CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf ---21479999998318968766855554038887001468844568876767786664449985578563657898644
Q 001527 210 ---FELILGLQVLDFHGNKLDGHLDGEFFLLTNASHIDFSGNMFVGSSSQKFLPGLSQSVQYLNLSLNQLTGSLVNGGEL 286 (1060)
Q Consensus 210 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~sL~~L~Ls~N~l~~~~~~~~~l 286 (1060)
+..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+..+. +. ...+|+.|++++|.+++.++ ..+
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~-~l~~L~~L~Ls~n~l~~~~~--~~l 243 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LG-DCSALQHLDISGNKLSGDFS--RAI 243 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CT-TCCSCCEEECCSSCCCSCHH--HHT
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC--CC-CCCCCCEEECCCCCCCCCCC--HHH
T ss_conf 56643589889898978803465784--5478689898928827887711--12-69999989794885878165--777
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCC
Q ss_conf 48999879984278464578986687886599843882766689310104887779598778815332572101--4875
Q 001527 287 QLFENLKVLDLSYNQLTGELPGFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSVSMILS--TNLH 364 (1060)
Q Consensus 287 ~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~~L~ 364 (1060)
..+++|+.|++++|++.+..|.. .+++|++|++++|++.+.+|..+...... |+.|++++|.+.+..|..+. ++|+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTT-CSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCC-CCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 44888898989888665716724-36878989791785577258888844686-88998968967784236775587766
Q ss_pred EEECCCCCCCCCCCCC----CCCCCEEECCCCCCCCCCCCCCCC-C-CCCEEECCCCEECCCCCCCCCC--CCCCCEEEC
Q ss_conf 8985687574668989----899878974377254324422378-9-6578985067302348998766--588986875
Q 001527 365 MLNLSSNGLTGELPLL----TGSCAVLDLSNNQFEGNLSRILKW-G-NIEYLDLSRNHLTGSIPEETPQ--FLRLNHLNL 436 (1060)
Q Consensus 365 ~L~Ls~N~l~~~~p~~----~~~l~~L~Ls~N~l~~~~~~~~~~-~-~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L 436 (1060)
.|++++|.+.+.+|.. ..+++.|++++|.+.+.+|..+.. . +|++|++++|.+++.+|..+.. +.+|+.|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEEC
T ss_conf 77897885257379788724888878848478437623098986322771998627874787676665332477618989
Q ss_pred CCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 67867555011000358875881588646582010122687765677268402333899978898875898468702223
Q 001527 437 SHNSLSSSLPKVIIQYQKLRVLDLSFNHLDGPFLTNLLNSSTLQELHLADNLLTGVLDFSPPSVSNLQVLDLSHNRLNGY 516 (1060)
Q Consensus 437 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 516 (1060)
++|++++.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|++++.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCC
T ss_conf 77846542487775689879898958846685467774499889898978815471897882877732999019951375
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 584225988876897789825002685663789998586567726578899974--578654376785721247212279
Q 001527 517 FPDRLGSLTGLKVLCLAGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLP--NSLETFNVSYNDFSGAVPENLRKF 594 (1060)
Q Consensus 517 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~--~~l~~l~ls~N~~~g~~p~~~~~~ 594 (1060)
+|..++++++|+.|+|++|++++.+|.+++.+++|+.|++++|+++|.+|..+. .+|+.+++++|+++|.+|..+...
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 88788169989989753995189687688568999989897894337488777088989989898884688279578604
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=474.00 Aligned_cols=548 Identities=20% Similarity=0.232 Sum_probs=343.4
Q ss_pred CCCCCCEEEECCCCE---------EEEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 998622189339972---------699915889865447421-1499887499876884533489885799997699757
Q 001527 57 CPSSWNGIVCNGGNV---------AGVVLDNLGLSAAADLSV-FSNLSMLVKLSMSNNSISGVIPDNIGDFKSLEFLDVS 126 (1060)
Q Consensus 57 ~~c~w~gv~C~~~~~---------~~~~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 126 (1060)
|.|.+..|.|.+... .+..+++.+..+.+..+. +.+++.|++|++++|.+.+..|..|.++++|++|+|+
T Consensus 2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CEEECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 54678744877798052641248887688898997787597887178767588788996485697787406676888899
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 98446657322245634672003354347645776667775569986488799999810139897668991158464347
Q 001527 127 DNLFSSSLPSGIGKLESLQNLSLAGNNFSGLIPDSVSGLVSIQSLDLSHNSFSGSLPPALTRLNNLVYLNLSSNGFSKRI 206 (1060)
Q Consensus 127 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 206 (1060)
+|++++..+..|.++++|++|+|++|++.+..|..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 98567568545303888898989899668539667415678888989899524667211124556777974588436529
Q ss_pred CCCCC--CCCCCCEEECCCCCCCCCCCHHHHCCC---------------------------CCCEECCCCCCCCCCCCCC
Q ss_conf 82221--479999998318968766855554038---------------------------8870014688445688767
Q 001527 207 PRGFE--LILGLQVLDFHGNKLDGHLDGEFFLLT---------------------------NASHIDFSGNMFVGSSSQK 257 (1060)
Q Consensus 207 p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------------~L~~L~ls~N~l~~~~~~~ 257 (1060)
+..+. .+++|+.|++++|.+++..+..|..+. +|+.|++++|.+.+..+..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHH
T ss_conf 78862446663217988898256558155532234455430566468056777877753151008874577436468667
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC-----CC-
Q ss_conf 67786664449985578563657898644489998799842784645789-866878865998438827666-----89-
Q 001527 258 FLPGLSQSVQYLNLSLNQLTGSLVNGGELQLFENLKVLDLSYNQLTGELP-GFNFVYELQVLKLSNNRFSGF-----IP- 330 (1060)
Q Consensus 258 ~~~~~~~sL~~L~Ls~N~l~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~-----ip- 330 (1060)
+......+|+.|++++|.+++..+ ..+..+++|+.|++++|++++..| .+..+++|+.|++++|...+. +|
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred HHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCC
T ss_conf 514676778887787887675680--211674105685577885676586562678885577363313213333355454
Q ss_pred --CCHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCC-CC-C-----CCCCCEEECCCCCCCCCCC
Q ss_conf --310104887779598778815332572101--48758985687574668-98-9-----8998789743772543244
Q 001527 331 --NDLLKGDSLLLTDLDLSANNLSGSVSMILS--TNLHMLNLSSNGLTGEL-PL-L-----TGSCAVLDLSNNQFEGNLS 399 (1060)
Q Consensus 331 --~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~~L~~L~Ls~N~l~~~~-p~-~-----~~~l~~L~Ls~N~l~~~~~ 399 (1060)
...+..... |+.|++++|.+.+..+..+. ++|+.|++++|.+.... +. . ...++.|++++|.+.+..+
T Consensus 320 i~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 320 IDDFSFQWLKC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp ECTTTTTTCTT-CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred CCHHHCCCCCC-CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECH
T ss_conf 38656246777-88887989826878855740656872898879801443235322024556867668899997776775
Q ss_pred CCCCC-CCCCEEECCCCEECCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC--CCCCCCCCC
Q ss_conf 22378-965789850673023489-98766588986875678675550110003588758815886465--820101226
Q 001527 400 RILKW-GNIEYLDLSRNHLTGSIP-EETPQFLRLNHLNLSHNSLSSSLPKVIIQYQKLRVLDLSFNHLD--GPFLTNLLN 475 (1060)
Q Consensus 400 ~~~~~-~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~ 475 (1060)
..+.. ++|++|++++|.+++.+| ..+..+.+|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..|.+
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 44207788888867787575435755325754612784489975422764550075431011014644225667764555
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 8776567726840233389997889887589846870222358--------42259888768977898250026856637
Q 001527 476 SSTLQELHLADNLLTGVLDFSPPSVSNLQVLDLSHNRLNGYFP--------DRLGSLTGLKVLCLAGNNISGSLPTSMAN 547 (1060)
Q Consensus 476 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~ 547 (1060)
+++|+.|++++|.++++.+..+..+++|+.|++++|++++..+ ..+.++++|+.|+|++|.++...+..+..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 78789998999987767944634553468885889973000000046774142337998888889999788779777346
Q ss_pred CCCCCEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 8999858656772657889997--45786543767857212472122----799964247999999
Q 001527 548 MTSLSSLVISQNHFTGPLPNNL--PNSLETFNVSYNDFSGAVPENLR----KFPSSSFYPGNSKLS 607 (1060)
Q Consensus 548 l~~L~~L~ls~N~l~g~~p~~~--~~~l~~l~ls~N~~~g~~p~~~~----~~~~~~~~~~~~~~~ 607 (1060)
+++|+.|++++|++++..+..+ ..+|+.+++++|.+++..|..+. .+......+|+-.|.
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 667522389999777679768378988888989999687059668301146657798318970257
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=463.65 Aligned_cols=486 Identities=21% Similarity=0.280 Sum_probs=293.9
Q ss_pred HHHHHHHHHHHHHCCCCCCC------CCCCCCCCCCCCCCCCCCCC---CEEEECCCCEEEEEECCCCCCCCCCCCCCC-
Q ss_conf 47799999999716689998------65788878888999999862---218933997269991588986544742114-
Q 001527 22 SQDILALLEFKKGIKNDPTG------FVLNSWNEESIDFDGCPSSW---NGIVCNGGNVAGVVLDNLGLSAAADLSVFS- 91 (1060)
Q Consensus 22 ~~~~~aLl~~k~~~~~~p~~------~~l~sW~~~~~~~~~~~c~w---~gv~C~~~~~~~~~l~~~~~~~~~~~~~~~- 91 (1060)
..|+.||.+||+++..+.+. ....+|+. +.+||.| .||+|+.. ++|+.+++.+..+.|.+++..
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHH
T ss_conf 7889999999997589974547767765788777-----998000147798487678-9788998427665772885785
Q ss_pred CCCCCCEEECCCCCCC------C------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECC--------
Q ss_conf 9988749987688453------3------489885799997699757984466573222456-346720033--------
Q 001527 92 NLSMLVKLSMSNNSIS------G------VIPDNIGDFKSLEFLDVSDNLFSSSLPSGIGKL-ESLQNLSLA-------- 150 (1060)
Q Consensus 92 ~l~~L~~L~l~~n~l~------~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls-------- 150 (1060)
+|++|++|+|++|.+. + .+|... +..|+ ++++.|.+.+.+|..+..+ ..+..+++.
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68451189876885123774334532356733888--88887-6577755411706667788777764275546541013
Q ss_pred ------------CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEEEEC
Q ss_conf ------------5434764577666777556998648879999-----------------981013--989766899115
Q 001527 151 ------------GNNFSGLIPDSVSGLVSIQSLDLSHNSFSGS-----------------LPPALT--RLNNLVYLNLSS 199 (1060)
Q Consensus 151 ------------~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~ 199 (1060)
+|++++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred CCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECC
T ss_conf 344213001013677750-7877725647878988688236642322122222100102486322004468788898048
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 84643478222147999999831896-876-6855554038887001468844568876767786664449985578563
Q 001527 200 NGFSKRIPRGFELILGLQVLDFHGNK-LDG-HLDGEFFLLTNASHIDFSGNMFVGSSSQKFLPGLSQSVQYLNLSLNQLT 277 (1060)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~sL~~L~Ls~N~l~ 277 (1060)
|.+.+.+|..|+.+++|+.|++++|+ +++ .+|..++.+..+ ....+|+.|++++|.++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~--------------------~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA--------------------PVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS--------------------GGGGTCCEEECCSSCCS
T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCC--------------------CCCCCCCEEECCCCCCC
T ss_conf 8577628388834999788978479887665335788754304--------------------65788888989799377
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 65789864448999879984278464578986687886599843882766689310104887779598778815332572
Q 001527 278 GSLVNGGELQLFENLKVLDLSYNQLTGELPGFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSVSM 357 (1060)
Q Consensus 278 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 357 (1060)
.+|....+..+++|+.|++++|++++.+|.+..+++|+.|++++|++. .+|.. +...
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l-------------------- 375 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPAN-FCGF-------------------- 375 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTT-SEEE--------------------
T ss_pred -CCCCHHHHCCCCCCCEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHH-HHHH--------------------
T ss_conf -667655542578889896908807051666478898898989899403-03375-6510--------------------
Q ss_pred CCCCC-CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCC-------CCC
Q ss_conf 10148-7589856875746689898998789743772543244223789657898506730234899876-------658
Q 001527 358 ILSTN-LHMLNLSSNGLTGELPLLTGSCAVLDLSNNQFEGNLSRILKWGNIEYLDLSRNHLTGSIPEETP-------QFL 429 (1060)
Q Consensus 358 ~~~~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~-------~l~ 429 (1060)
++ |+.|++++|.++ .+|..+..+ ...+|++|++++|.+++.+|..+. .+.
T Consensus 376 ---~~~L~~L~Ls~N~l~-~lp~~~~~~------------------~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 376 ---TEQVENLSFAHNKLK-YIPNIFDAK------------------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ---CTTCCEEECCSSCCS-SCCSCCCTT------------------CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred ---CCCCCEEECCCCCCC-CCCHHHHHC------------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf ---236868985298275-446655333------------------4576688977488578865244200220112589
Q ss_pred CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC-CCCC-------CCCCEEECCCCCCCCCCCCCCC--C
Q ss_conf 8986875678675550110003588758815886465820101-2268-------7765677268402333899978--8
Q 001527 430 RLNHLNLSHNSLSSSLPKVIIQYQKLRVLDLSFNHLDGPFLTN-LLNS-------STLQELHLADNLLTGVLDFSPP--S 499 (1060)
Q Consensus 430 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l-------~~L~~L~L~~N~l~~~~~~~~~--~ 499 (1060)
+|+.|++++|+++...+..+..+++|+.|++++|.+. .+|.. +... ++|+.|++++|+++ .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCC
T ss_conf 8888977279668678788715898898989799788-7397884044001221477338989699388-1685453445
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 988758984687022235842259888768977------89825002685663789998586567726578899974578
Q 001527 500 VSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCL------AGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLPNSL 573 (1060)
Q Consensus 500 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~l 573 (1060)
+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|..+..+|
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L 589 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNI 589 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTC
T ss_pred CCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHHCCC
T ss_conf 8876989898998877-682353088878788988866566731212737785699878898989947-70597683867
Q ss_pred CEEECCCCCCCCC
Q ss_conf 6543767857212
Q 001527 574 ETFNVSYNDFSGA 586 (1060)
Q Consensus 574 ~~l~ls~N~~~g~ 586 (1060)
+.+++++|++...
T Consensus 590 ~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 590 SVLDIKDNPNISI 602 (636)
T ss_dssp CEEECCSCTTCEE
T ss_pred CEEECCCCCCCCC
T ss_conf 8998769987633
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=462.45 Aligned_cols=487 Identities=22% Similarity=0.204 Sum_probs=405.4
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 87499876884533489885799997699757984466573222456346720033543476457766677755699864
Q 001527 95 MLVKLSMSNNSISGVIPDNIGDFKSLEFLDVSDNLFSSSLPSGIGKLESLQNLSLAGNNFSGLIPDSVSGLVSIQSLDLS 174 (1060)
Q Consensus 95 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 174 (1060)
.+++|++++|.+++..|..|.++++|++|+|++|++.+..|.+|.++++|++|+|++|++.+..|..|.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC--EECCCCCCCCC
Q ss_conf 8879999981013989766899115846434782221479999998318968766855554038887--00146884456
Q 001527 175 HNSFSGSLPPALTRLNNLVYLNLSSNGFSKRIPRGFELILGLQVLDFHGNKLDGHLDGEFFLLTNAS--HIDFSGNMFVG 252 (1060)
Q Consensus 175 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--~L~ls~N~l~~ 252 (1060)
+|.+++..+..++++++|++|++++|.+++.....+..+++|+.|++++|.+++..+..|..+++|+ .|++++|.+.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred CCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 26766578101223782238988798341147654568765687776568445549656332215640389667981475
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCC------------------------CCCCCCCCCCCC--CCCEEECCCCCCCCCC
Q ss_conf 88767677866644499855785636------------------------578986444899--9879984278464578
Q 001527 253 SSSQKFLPGLSQSVQYLNLSLNQLTG------------------------SLVNGGELQLFE--NLKVLDLSYNQLTGEL 306 (1060)
Q Consensus 253 ~~~~~~~~~~~~sL~~L~Ls~N~l~~------------------------~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~ 306 (1060)
..+..+.. .+|+.|++++|.... .......+..+. +|+.|++++|.+++..
T Consensus 194 ~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 194 IEPGAFDS---AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp ECTTTTTT---CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CCHHHHHH---CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCC
T ss_conf 48667300---100135567726677776513356442200201102641226866743032075059994457658557
Q ss_pred C-CCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCC---
Q ss_conf 9-86687886599843882766689310104887779598778815332572101--48758985687574668989---
Q 001527 307 P-GFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSVSMILS--TNLHMLNLSSNGLTGELPLL--- 380 (1060)
Q Consensus 307 p-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~--- 380 (1060)
+ .|..+++|++|++++|++. .+|. .+..... |+.|++++|.+.+..+..+. ++|+.|++++|.+.+.+|..
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPS-GLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred HHHHCCCCCCCEEECCCCCCC-CCCH-HHCCCCC-CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 777445667888956288267-7782-1416546-888977168768676023301576898889899744434624550
Q ss_pred -CCCCCEEECCCCCCCCCC--CC-CCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HCCCCCCC
Q ss_conf -899878974377254324--42-23789657898506730234899876658898687567867555011-00035887
Q 001527 381 -TGSCAVLDLSNNQFEGNL--SR-ILKWGNIEYLDLSRNHLTGSIPEETPQFLRLNHLNLSHNSLSSSLPK-VIIQYQKL 455 (1060)
Q Consensus 381 -~~~l~~L~Ls~N~l~~~~--~~-~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L 455 (1060)
..+++.|++++|.+.+.. +. +...++|++|++++|.+.+..|..+..+++|+.|++++|++.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 66758988788996664567522105678889898989967757888734774577687888867775652124176558
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 5881588646582010122687765677268402333---8999788988758984687022235842259888768977
Q 001527 456 RVLDLSFNHLDGPFLTNLLNSSTLQELHLADNLLTGV---LDFSPPSVSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCL 532 (1060)
Q Consensus 456 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 532 (1060)
+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++++..|..|+++++|+.|+|
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88989898557768778737887888989899888543454312404887668879999667068646326567888989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCC
Q ss_conf 89825002685663789998586567726578899974--578654376785721247
Q 001527 533 AGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLP--NSLETFNVSYNDFSGAVP 588 (1060)
Q Consensus 533 s~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~--~~l~~l~ls~N~~~g~~p 588 (1060)
++|++++.+|..+..++.| .|++++|++++.+|..+. .+|+.+++++|++.+..+
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 8980686896684756651-89876894142687662567787889677998616677
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=461.90 Aligned_cols=484 Identities=23% Similarity=0.252 Sum_probs=379.8
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 9988749987688453348988579999769975798446657-322245634672003354347645776667775569
Q 001527 92 NLSMLVKLSMSNNSISGVIPDNIGDFKSLEFLDVSDNLFSSSL-PSGIGKLESLQNLSLAGNNFSGLIPDSVSGLVSIQS 170 (1060)
Q Consensus 92 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 170 (1060)
-.+.+++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEECC
Q ss_conf 986488799999810--1398976689911584643478-222147999999831896876685555403--88870014
Q 001527 171 LDLSHNSFSGSLPPA--LTRLNNLVYLNLSSNGFSKRIP-RGFELILGLQVLDFHGNKLDGHLDGEFFLL--TNASHIDF 245 (1060)
Q Consensus 171 L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~l 245 (1060)
|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+.+++|+.|+|++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCCCC----------------------------------CCCC
Q ss_conf 6884456887676778----6664449985578563657898----------------------------------6444
Q 001527 246 SGNMFVGSSSQKFLPG----LSQSVQYLNLSLNQLTGSLVNG----------------------------------GELQ 287 (1060)
Q Consensus 246 s~N~l~~~~~~~~~~~----~~~sL~~L~Ls~N~l~~~~~~~----------------------------------~~l~ 287 (1060)
+.|.+.+..+..+... ...+|+.|++++|.+++..+.. ..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78866655455332237722357400796578868656778887642744100112121223466444566889855652
Q ss_pred C--CCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCC--CC
Q ss_conf 8--9998799842784645789-86687886599843882766689310104887779598778815332572101--48
Q 001527 288 L--FENLKVLDLSYNQLTGELP-GFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSVSMILS--TN 362 (1060)
Q Consensus 288 ~--l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~~ 362 (1060)
. .++|+.|++++|.+.+..+ .|..+++|+.|++++|++.+..+. .+.+... |+.|++++|.+.+..+..+. ++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDN-LQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSS-CCEEEEESCCCSCCCSCSCSSCTT
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH-HHCCCCC-CCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 55547861898979945515863452589999998979818987968-8368889-998989899788518788468999
Q ss_pred CCEEECCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCC
Q ss_conf 7589856875746689898---9987897437725432442237896578985067302348998766588986875678
Q 001527 363 LHMLNLSSNGLTGELPLLT---GSCAVLDLSNNQFEGNLSRILKWGNIEYLDLSRNHLTGSIPEETPQFLRLNHLNLSHN 439 (1060)
Q Consensus 363 L~~L~Ls~N~l~~~~p~~~---~~l~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 439 (1060)
|+.|++++|.+.+..+..+ .+++.|++++|.+++... .++|+.|++++|+++ .+|.. ..+++.|++++|
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N 411 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSEN 411 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCC
T ss_conf 9989898998776286661378889998898997786168----898232005899723-14554---554312214567
Q ss_pred CCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCC-----CCCCCCCCCCCCCEEECCCCC
Q ss_conf 6755501-1000358875881588646582010-12268776567726840233-----389997889887589846870
Q 001527 440 SLSSSLP-KVIIQYQKLRVLDLSFNHLDGPFLT-NLLNSSTLQELHLADNLLTG-----VLDFSPPSVSNLQVLDLSHNR 512 (1060)
Q Consensus 440 ~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~ 512 (1060)
++++... ..+.++++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|.
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred CCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 53457556665127766666677871255554333566873100247777364410135535554475536577788985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 2223584225988876897789825002685663789998586567726578899974578654376785721247
Q 001527 513 LNGYFPDRLGSLTGLKVLCLAGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLPNSLETFNVSYNDFSGAVP 588 (1060)
Q Consensus 513 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~l~~l~ls~N~~~g~~p 588 (1060)
+++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|..+ .+|..+++++|++.+..+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF-VSLSVLDITHNKFICECE 564 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-SSCCEEEEEEECCCCSSS
T ss_pred CCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH-CCCCEEEECCCCCCCCCC
T ss_conf 6553955704501221569999978745710110--045588898884788896683-776889931997025366
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=460.36 Aligned_cols=484 Identities=23% Similarity=0.243 Sum_probs=362.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88749987688453348988579999769975798446657322245634672003354347645776667775569986
Q 001527 94 SMLVKLSMSNNSISGVIPDNIGDFKSLEFLDVSDNLFSSSLPSGIGKLESLQNLSLAGNNFSGLIPDSVSGLVSIQSLDL 173 (1060)
Q Consensus 94 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 173 (1060)
+.+++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC----EECCCCC
Q ss_conf 4887999998101398976689911584643-4782221479999998318968766855554038887----0014688
Q 001527 174 SHNSFSGSLPPALTRLNNLVYLNLSSNGFSK-RIPRGFELILGLQVLDFHGNKLDGHLDGEFFLLTNAS----HIDFSGN 248 (1060)
Q Consensus 174 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~ls~N 248 (1060)
++|.+++..+..++++++|++|++++|.+++ .+|..|+.+++|+.|++++|++++..+..|..+++|+ .+++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCC
T ss_conf 37755544511348988779896878852325306867326777788766885310573341212034200243004689
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEC-------------------------------
Q ss_conf 4456887676778666444998557856365789864448999879984-------------------------------
Q 001527 249 MFVGSSSQKFLPGLSQSVQYLNLSLNQLTGSLVNGGELQLFENLKVLDL------------------------------- 297 (1060)
Q Consensus 249 ~l~~~~~~~~~~~~~~sL~~L~Ls~N~l~~~~~~~~~l~~l~~L~~L~L------------------------------- 297 (1060)
.+....+..+.. .+|+.|++++|.+.+...+ ..+..++.++.+++
T Consensus 192 ~l~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 192 PIDFIQDQAFQG---IKLHELTLRGNFNSSNIMK-TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CCCEECTTTTTT---CEEEEEEEESCCSCHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred CCCEECCCCCCC---CEEEEEECCCCCCCHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEE
T ss_conf 753257110567---6043352467856166778-886026656523141111036774102681776666543474501
Q ss_pred --CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf --278464578986687886599843882766689310104887779598778815332572101487589856875746
Q 001527 298 --SYNQLTGELPGFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSVSMILSTNLHMLNLSSNGLTG 375 (1060)
Q Consensus 298 --s~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~Ls~N~l~~ 375 (1060)
..|.+.+..|.+..+++|+.|++++|.+. .+| .+..... |+.|++++|.+. .+|....++|+.|++++|...+
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~-L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFK-WQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCC-CSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCH-HHH--HCCCCCC-CCEEECCCCCCC-CCCCCCCCCCCEEECCCCCCCC
T ss_conf 2366555543222354887898771476604-435--4334011-778976466676-5466788755644544786853
Q ss_pred CCCC-CCCCCCEEECCCCCCCCC---CCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHCC
Q ss_conf 6898-989987897437725432---4422378965789850673023489987665889868756786755501-1000
Q 001527 376 ELPL-LTGSCAVLDLSNNQFEGN---LSRILKWGNIEYLDLSRNHLTGSIPEETPQFLRLNHLNLSHNSLSSSLP-KVII 450 (1060)
Q Consensus 376 ~~p~-~~~~l~~L~Ls~N~l~~~---~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 450 (1060)
.++. ...+++.|++++|.+.+. +..+...++|++|++++|.++ .+|..+..+++|+.|++++|++.+..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHHHCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 10002489888797758736877520122146775548678899530-00554068888896589887058753764564
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 35887588158864658201012268776567726840233-38999788988758984687022235842259888768
Q 001527 451 QYQKLRVLDLSFNHLDGPFLTNLLNSSTLQELHLADNLLTG-VLDFSPPSVSNLQVLDLSHNRLNGYFPDRLGSLTGLKV 529 (1060)
Q Consensus 451 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 529 (1060)
.+++|+.|++++|.+.+..+..+.++++|+.|++++|.+++ .+|..+..+++|+.|++++|++++..|..++++++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 62137889896897874335553477878989898983798546776045788998989888577648656154646898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCC
Q ss_conf 9778982500268566378999858656772657889997---4578654376785721247
Q 001527 530 LCLAGNNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNL---PNSLETFNVSYNDFSGAVP 588 (1060)
Q Consensus 530 L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~---~~~l~~l~ls~N~~~g~~p 588 (1060)
|+|++|++++.+|..+..+++|+.|++++|+++ .+|..+ +.+|+.+++++|++.+..+
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 989899578748777068876898889898376-6687675210217488762898664776
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=455.81 Aligned_cols=492 Identities=20% Similarity=0.207 Sum_probs=254.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCC------------CEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 9947799999999716689998657888788889--99999862------------218933997269991588986544
Q 001527 20 LPSQDILALLEFKKGIKNDPTGFVLNSWNEESID--FDGCPSSW------------NGIVCNGGNVAGVVLDNLGLSAAA 85 (1060)
Q Consensus 20 ~~~~~~~aLl~~k~~~~~~p~~~~l~sW~~~~~~--~~~~~c~w------------~gv~C~~~~~~~~~l~~~~~~~~~ 85 (1060)
....|+.||++||+++. +| +|+.+..+ ..+|+|.| .||.|+. +.+|+.+++.+..+.|
T Consensus 266 ~~~~d~~ALl~~k~~l~-~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALD-GK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHHHHHHHHTT-GG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred CCHHHHHHHHHHHHHCC-CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCC
T ss_conf 63178999999999737-99------9886898653367764034666545335768428369-9979899872478999
Q ss_pred CCCCCC-CCCCCCEEEC-CCCCCCCCCCCCCCCCC-CCCE--------------EE-CCCCCCCCCC-----------CC
Q ss_conf 742114-9988749987-68845334898857999-9769--------------97-5798446657-----------32
Q 001527 86 DLSVFS-NLSMLVKLSM-SNNSISGVIPDNIGDFK-SLEF--------------LD-VSDNLFSSSL-----------PS 136 (1060)
Q Consensus 86 ~~~~~~-~l~~L~~L~l-~~n~l~~~~p~~~~~l~-~L~~--------------L~-Ls~n~l~~~~-----------p~ 136 (1060)
.+++.. +|++|+.|+| ++|.+.|..|-...... .+.. ++ .....+++.. +.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred CCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 48557741555628430125633566642223445441156788877766665420375111567878776507332432
Q ss_pred CCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCCCCCC--CCCCCCEE
Q ss_conf 224563467200335--43476457766677755699864887999-----------------9981013--98976689
Q 001527 137 GIGKLESLQNLSLAG--NNFSGLIPDSVSGLVSIQSLDLSHNSFSG-----------------SLPPALT--RLNNLVYL 195 (1060)
Q Consensus 137 ~l~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L 195 (1060)
.......++.+.+.. |++++ +|..|.++++|++|+|++|.+++ .+|..++ ++++|++|
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred CCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEE
T ss_conf 2235442312040566676152-118875699987897968867887465322332222224458744402559997789
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCHHHHCCC-CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 911584643478222147999999831896-876-6855554038-8870014688445688767677866644499855
Q 001527 196 NLSSNGFSKRIPRGFELILGLQVLDFHGNK-LDG-HLDGEFFLLT-NASHIDFSGNMFVGSSSQKFLPGLSQSVQYLNLS 272 (1060)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~~~~sL~~L~Ls 272 (1060)
+|++|.+.+.+|..|..+++|+.|+|++|+ +++ .+|..+..++ .+ ....+|+.|+|+
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~--------------------~~l~~L~~L~Ls 556 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE--------------------DTGPKIQIFYMG 556 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT--------------------TTTTTCCEEECC
T ss_pred ECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCC--------------------CCCCCCCEEEEE
T ss_conf 871898875273877379998999896898765664617787523301--------------------556883199822
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCC
Q ss_conf 785636578986--444899987998427846457898668788659984388276668931010488777959877881
Q 001527 273 LNQLTGSLVNGG--ELQLFENLKVLDLSYNQLTGELPGFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANN 350 (1060)
Q Consensus 273 ~N~l~~~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~ 350 (1060)
+|.++ .+| . .+..+++|+.|+|++|+++ .+|.+..+++|+.|++++|++. .+|.. +......|+.|++++|.
T Consensus 557 ~N~L~-~ip--~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 557 YNNLE-EFP--ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp SSCCC-BCC--CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSC
T ss_pred CCCCC-CCC--CHHHHHCCCCCCEEECCCCCCC-CCHHHCCCCCCEEEECCCCCCC-CCHHH-HHHCCCCCCEEECCCCC
T ss_conf 89477-618--7235515898898989799825-6212247985007987187125-03587-75251149899984997
Q ss_pred CCCCCCCCCC----CCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCC
Q ss_conf 5332572101----487589856875746689898998789743772543244223789657898506730234899876
Q 001527 351 LSGSVSMILS----TNLHMLNLSSNGLTGELPLLTGSCAVLDLSNNQFEGNLSRILKWGNIEYLDLSRNHLTGSIPEETP 426 (1060)
Q Consensus 351 l~~~~~~~~~----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~ 426 (1060)
+.. +|..+. ++|+.|++++|.+.+.+|.....+ .. .
T Consensus 631 L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l---------------~~------------------------~ 670 (876)
T 4ecn_A 631 LKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM---------------DD------------------------Y 670 (876)
T ss_dssp CCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT---------------TT------------------------C
T ss_pred CCC-CCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHH---------------CC------------------------C
T ss_conf 874-7644522556777889770884788643200000---------------01------------------------3
Q ss_pred CCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCC--------CCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 6588986875678675550110003588758815886465820101226--------87765677268402333899978
Q 001527 427 QFLRLNHLNLSHNSLSSSLPKVIIQYQKLRVLDLSFNHLDGPFLTNLLN--------SSTLQELHLADNLLTGVLDFSPP 498 (1060)
Q Consensus 427 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~ 498 (1060)
.+.+|+.|++++|+++...+..+..+++|+.|++++|.+. .+|..+.. +++|+.|+|++|+++ .+|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHH
T ss_conf 5797688983199688659788713898899989899688-5496784555334321487158988899786-6527762
Q ss_pred --CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC------CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf --898875898468702223584225988876897789------825002685663789998586567726578899974
Q 001527 499 --SVSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCLAG------NNISGSLPTSMANMTSLSSLVISQNHFTGPLPNNLP 570 (1060)
Q Consensus 499 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~ 570 (1060)
.+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred HCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC
T ss_conf 4427986989908997876-105661599988998879977665632444868883699878898879978-74087662
Q ss_pred CCCCEEECCCCCCCCCCCCC
Q ss_conf 57865437678572124721
Q 001527 571 NSLETFNVSYNDFSGAVPEN 590 (1060)
Q Consensus 571 ~~l~~l~ls~N~~~g~~p~~ 590 (1060)
++|+.+++++|++....+..
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp SSSCEEECCSCTTCEEECGG
T ss_pred CCCCEEECCCCCCCCCCHHH
T ss_conf 87788999799888117677
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=453.08 Aligned_cols=493 Identities=23% Similarity=0.189 Sum_probs=406.7
Q ss_pred CCCEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 62218933997269991588986544742-1149988749987688453348-988579999769975798446657322
Q 001527 60 SWNGIVCNGGNVAGVVLDNLGLSAAADLS-VFSNLSMLVKLSMSNNSISGVI-PDNIGDFKSLEFLDVSDNLFSSSLPSG 137 (1060)
Q Consensus 60 ~w~gv~C~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 137 (1060)
.|..|-+ -...+..|++.++.+....+ .+.+++.|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.+..|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 9777898--99986888887786783296677662137088678997744419778537877888879899585319767
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCC-
Q ss_conf 245634672003354347645776--6677755699864887999998-101398976689911584643478222147-
Q 001527 138 IGKLESLQNLSLAGNNFSGLIPDS--VSGLVSIQSLDLSHNSFSGSLP-PALTRLNNLVYLNLSSNGFSKRIPRGFELI- 213 (1060)
Q Consensus 138 l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l- 213 (1060)
|.++++|++|+|++|.+.+..|.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..|..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCC
T ss_conf 15786658701767889734046764556679998889878642325665576388989898989847766788753556
Q ss_pred -CCCCEEECCCCCCCCCCCHHHHCCCC------CCEECCCCCCCCCCCCCCCCC--------------------------
Q ss_conf -99999983189687668555540388------870014688445688767677--------------------------
Q 001527 214 -LGLQVLDFHGNKLDGHLDGEFFLLTN------ASHIDFSGNMFVGSSSQKFLP-------------------------- 260 (1060)
Q Consensus 214 -~~L~~L~Ls~N~l~~~~~~~~~~l~~------L~~L~ls~N~l~~~~~~~~~~-------------------------- 260 (1060)
++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+..+..+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 77503578978866655455332237722357400796578868656778887642744100112121223466444566
Q ss_pred ---------C-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC
Q ss_conf ---------8-6664449985578563657898644489998799842784645789-8668788659984388276668
Q 001527 261 ---------G-LSQSVQYLNLSLNQLTGSLVNGGELQLFENLKVLDLSYNQLTGELP-GFNFVYELQVLKLSNNRFSGFI 329 (1060)
Q Consensus 261 ---------~-~~~sL~~L~Ls~N~l~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~i 329 (1060)
+ ...+++.|++++|.+.+..+ ..+..+++|+.|+|++|++++..| .|..+++|++|++++|++.+..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECS--CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCHHHHHCCCCCCCCEEECCCCCCCCCCH--HHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 8898556525554786189897994551586--34525899999989798189879688368889998989899788518
Q ss_pred CCCHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9310104887779598778815332572101--48758985687574668989899878974377254324422378965
Q 001527 330 PNDLLKGDSLLLTDLDLSANNLSGSVSMILS--TNLHMLNLSSNGLTGELPLLTGSCAVLDLSNNQFEGNLSRILKWGNI 407 (1060)
Q Consensus 330 p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~Ls~N~l~~~~~~~~~~~~L 407 (1060)
+. .+..... |+.|++++|.+....+..+. ++|+.|++++|.+++... ..+++.|++++|.+...+.. ..++
T Consensus 331 ~~-~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~---~~~l 403 (844)
T 3j0a_A 331 SS-NFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKI---NLTA 403 (844)
T ss_dssp SC-SCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCC---CTTC
T ss_pred HH-HHCCCCC-CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCHHCCCCCCCCCCCCC---CCCC
T ss_conf 78-8468999-9989898998776286661378889998898997786168--89823200589972314554---5543
Q ss_pred CEEECCCCEECCCCC-CCCCCCCCCCEEECCCCCCCCCCCH-HCCCCCCCCEEECCCCCCCC-----CCCCCCCCCCCCC
Q ss_conf 789850673023489-9876658898687567867555011-00035887588158864658-----2010122687765
Q 001527 408 EYLDLSRNHLTGSIP-EETPQFLRLNHLNLSHNSLSSSLPK-VIIQYQKLRVLDLSFNHLDG-----PFLTNLLNSSTLQ 480 (1060)
Q Consensus 408 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~ 480 (1060)
+.|++++|++++.-. ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+.. ..+..|.++++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred CEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 12214567534575566651277666666778712555543335668731002477773644101355355544755365
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 67726840233389997889887589846870222358422598887689778982500268566378999858656772
Q 001527 481 ELHLADNLLTGVLDFSPPSVSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCLAGNNISGSLPTSMANMTSLSSLVISQNH 560 (1060)
Q Consensus 481 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~ 560 (1060)
.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..+ .+|+.|++++|+
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np 558 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNK 558 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEEC
T ss_pred EEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCC
T ss_conf 777889856553955704501221569999978745710110--045588898884788896683---776889931997
Q ss_pred CCCCCCCC
Q ss_conf 65788999
Q 001527 561 FTGPLPNN 568 (1060)
Q Consensus 561 l~g~~p~~ 568 (1060)
+.+..+..
T Consensus 559 ~~C~c~~~ 566 (844)
T 3j0a_A 559 FICECELS 566 (844)
T ss_dssp CCCSSSCC
T ss_pred CCCCCCCH
T ss_conf 02536618
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=446.86 Aligned_cols=516 Identities=22% Similarity=0.232 Sum_probs=425.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 69991588986544742114998874998768845334898857999976997579844665732224563467200335
Q 001527 72 AGVVLDNLGLSAAADLSVFSNLSMLVKLSMSNNSISGVIPDNIGDFKSLEFLDVSDNLFSSSLPSGIGKLESLQNLSLAG 151 (1060)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 151 (1060)
.++.+...+.. .+|.... +.+++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 7 ~~~~cs~~~L~---~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLT---QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCS---SCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CEEECCCCCCC---CCCCCCC-CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 74487779805---2641248-8876888989977875978871787675887889964856977874066768888999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 43476457766677755699864887999998101398976689911584643478222147999999831896876685
Q 001527 152 NNFSGLIPDSVSGLVSIQSLDLSHNSFSGSLPPALTRLNNLVYLNLSSNGFSKRIPRGFELILGLQVLDFHGNKLDGHLD 231 (1060)
Q Consensus 152 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (1060)
|++....+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|..+++|++|++++|.+++..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 85675685453038888989898996685396674156788889898995246672111245567779745884365297
Q ss_pred HHHH--CCCCCCEECCCCCCCCCCCCCCCCCC-------------------------CCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 5554--03888700146884456887676778-------------------------66644499855785636578986
Q 001527 232 GEFF--LLTNASHIDFSGNMFVGSSSQKFLPG-------------------------LSQSVQYLNLSLNQLTGSLVNGG 284 (1060)
Q Consensus 232 ~~~~--~l~~L~~L~ls~N~l~~~~~~~~~~~-------------------------~~~sL~~L~Ls~N~l~~~~~~~~ 284 (1060)
..+. .+++|+.|++++|.+.+..+..+... ...+|+.|++++|.+++..+ .
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~--~ 240 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--T 240 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT--T
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCH--H
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686--6
Q ss_pred CCCCCC--CCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCC-----C
Q ss_conf 444899--98799842784645789-866878865998438827666893101048877795987788153325-----7
Q 001527 285 ELQLFE--NLKVLDLSYNQLTGELP-GFNFVYELQVLKLSNNRFSGFIPNDLLKGDSLLLTDLDLSANNLSGSV-----S 356 (1060)
Q Consensus 285 ~l~~l~--~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~L~~L~Ls~N~l~~~~-----~ 356 (1060)
.+..++ +|+.|++++|++++..| .+..+++|++|++++|.+.+..|. .+.+... |+.|++++|...+.. |
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~-L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFN-VRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTT-CCEEECTTCBCCC------CC
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH-HHCCCCC-CCEEECCCHHHHCCCCCCCCC
T ss_conf 75146767788877878876756802116741056855778856765865-6267888-557736331321333335545
Q ss_pred ----CCC--CCCCCEEECCCCCCCCCCCCCCC---CCCEEECCCCCCCCCC--CCCC---CCCCCCEEECCCCEECCCCC
Q ss_conf ----210--14875898568757466898989---9878974377254324--4223---78965789850673023489
Q 001527 357 ----MIL--STNLHMLNLSSNGLTGELPLLTG---SCAVLDLSNNQFEGNL--SRIL---KWGNIEYLDLSRNHLTGSIP 422 (1060)
Q Consensus 357 ----~~~--~~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~Ls~N~l~~~~--~~~~---~~~~L~~L~L~~N~l~~~~p 422 (1060)
..+ .++|+.|++++|.+++..+..+. +++.|++++|.+.... ...+ ..++|+.|++++|++++..|
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECH
T ss_conf 43865624677788887989826878855740656872898879801443235322024556867668899997776775
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCC
Q ss_conf 987665889868756786755501-10003588758815886465820101226877656772684023--338999788
Q 001527 423 EETPQFLRLNHLNLSHNSLSSSLP-KVIIQYQKLRVLDLSFNHLDGPFLTNLLNSSTLQELHLADNLLT--GVLDFSPPS 499 (1060)
Q Consensus 423 ~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~ 499 (1060)
..+..+.+|+.|++++|++.+.+| ..|.++++|+.|++++|.+.+..+..|..++.|+.|++++|.+. +..|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 44207788888867787575435755325754612784489975422764550075431011014644225667764555
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCC-C-
Q ss_conf 9887589846870222358422598887689778982500268--------56637899985865677265788999-7-
Q 001527 500 VSNLQVLDLSHNRLNGYFPDRLGSLTGLKVLCLAGNNISGSLP--------TSMANMTSLSSLVISQNHFTGPLPNN-L- 569 (1060)
Q Consensus 500 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p--------~~~~~l~~L~~L~ls~N~l~g~~p~~-~- 569 (1060)
+++|+.|++++|++++..|..+.++++|+.|+|++|.+++..+ ..+..+++|+.|++++|+++ .+|.. +
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~ 557 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFK 557 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHCC
T ss_conf 78789998999987767944634553468885889973000000046774142337998888889999788-77977734
Q ss_pred -CCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -457865437678572124721227999
Q 001527 570 -PNSLETFNVSYNDFSGAVPENLRKFPS 596 (1060)
Q Consensus 570 -~~~l~~l~ls~N~~~g~~p~~~~~~~~ 596 (1060)
..+|+.+++++|.+++..+..|..++.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 6667522389999777679768378988
Done!