BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001528
(1059 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 153/231 (66%), Gaps = 9/231 (3%)
Query: 594 SVKIQEGNFSW---DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
S+ ++ F+W DP PTL G+ I +AV G VG GKSSLL A+L E+ K+
Sbjct: 3 SITVRNATFTWARSDP----PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G V + GS+AYV Q +WIQ+ S+R+NIL+G +++ Y I+ACAL D+ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALE 768
TEIG++G+NLSGGQKQR+ LARAVY++ADIYLFDDP SAVDAH +F + L+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
KT ILVTH + +L +VD I+V+ GG+I++ G+YQELL AF + + +
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI++G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI++G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R I
Sbjct: 262 TFDQFTEERRXXI 274
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 17/261 (6%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
L + N++ R+ S D S+ NFS L P L+ +N I+ Q +AV GS
Sbjct: 21 LFEKAKQNNNNRKTS--NGDDSLSFS--NFSL---LGTPVLKDINFKIERGQLLAVAGST 73
Query: 633 GAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692
GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+ G D+ RY
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSV 133
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D
Sbjct: 134 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 193
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL------- 805
T +F CV + KT ILVT ++E L + D+IL+L G G + EL
Sbjct: 194 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 253
Query: 806 ---LLAGTAFEQLVNAHRDAI 823
L+ +F+Q R++I
Sbjct: 254 SSKLMGCDSFDQFSAERRNSI 274
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 262 TFDQFTEERRSSI 274
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 28 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 86
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 87 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 146
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 147 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 206
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 207 KADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 16 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 74
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 75 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 134
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 195 KADKILILHEGSSYFYGTFSEL 216
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 145/261 (55%), Gaps = 18/261 (6%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
L + N++ R+ S D S+ NFS L P L+ +N I+ Q +AV GS
Sbjct: 21 LFEKAKQNNNNRKTS--NGDDSLSFS--NFSL---LGTPVLKDINFKIERGQLLAVAGST 73
Query: 633 GAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692
GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+ G D+ RY
Sbjct: 74 GAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSV 132
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL------- 805
T +F CV + KT ILVT ++E L + D+IL+L G G + EL
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 806 ---LLAGTAFEQLVNAHRDAI 823
L+ +F+Q R++I
Sbjct: 253 SSKLMGCDSFDQFSAERRNSI 273
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 14/233 (6%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
NFS L P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I
Sbjct: 45 NFSL---LGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI 101
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
++ SQ SWI G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ L
Sbjct: 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGGQ+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 781 FLSEVDRILVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L + D+IL+L G G + EL L+ +F+Q R++I
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSI 273
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 139/253 (54%), Gaps = 13/253 (5%)
Query: 583 VRRISLQKSDRSVKIQEGNFSWDPELAI--PTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ ++ DR E N S+ + P L+ +NL+I+ + +A+ GS G+GK+SLL
Sbjct: 22 LEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
ILGE+ G + G +++ SQ SWI G+I++NI+ G D+ RY +KAC L +
Sbjct: 82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQ 140
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F
Sbjct: 141 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
CV + KT ILVT ++E L + D+IL+L G G + EL L+
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 260
Query: 811 AFEQLVNAHRDAI 823
F+Q R +I
Sbjct: 261 TFDQFTEERRSSI 273
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 130/225 (57%), Gaps = 10/225 (4%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
I G+I++NI++G D+ RY IKAC L++DI+ F D +G+ G+ LS GQ+ +I
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L + D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 789 LVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L+L G G + EL L+ +F+Q R++I
Sbjct: 230 LILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSI 274
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 123/202 (60%), Gaps = 2/202 (0%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
W+ E P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++
Sbjct: 16 WE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 74
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ SWI G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ LSGG
Sbjct: 75 SQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 133
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
Q+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L
Sbjct: 134 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 193
Query: 784 EVDRILVLEGGQITQSGNYQEL 805
+ D+IL+L G G + EL
Sbjct: 194 KADKILILHEGSSYFYGTFSEL 215
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 169 bits (427), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 129/225 (57%), Gaps = 11/225 (4%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
P L+ +N I+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SW
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
I G+I++NI+ G D+ RY IKAC L++DI+ F D +G+ G+ LS GQ+ +I
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 168
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E L + D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 789 LVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L+L G G + EL L+ +F+Q R++I
Sbjct: 229 LILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSI 273
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 230/512 (44%), Gaps = 76/512 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+ ++ +F++ +P LRG+NL + Q +A+ GS G GKS+++ +L + G +
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL--- 698
+ G ++A VSQ + + +I +NI GK + ++ + AC +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK--EGITREEMVAACKMANA 533
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
+K I +G T +G RG LSGGQKQRI +ARA+ + I L D+ SA+DA + +
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG-I 592
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
+ + A + +T I++ H++ + D I+ + GQ+ + G+++ L+ + LV A
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 819 HRDAITGLGPLDNAGQGGAEK---------VEKGRTARPEEPNGIYPRKESSEGEISVKG 869
T +D+A +G + +G + + E + I R SS ++
Sbjct: 653 Q----TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSS----TIGS 704
Query: 870 LTQ--LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVL------AQSGFVGLQAAATY 921
+T + +++E IG L + +L A S F+G+ A
Sbjct: 705 ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIG 764
Query: 922 WLAYAIQIPKITSGILIGVYAG------------------VSTASAVFVYFRSFFAAHLG 963
Y TS + V+AG ++ A + + +FF +G
Sbjct: 765 GFIYPTYSVFFTS--FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFF---MG 819
Query: 964 LKASKAFFSGFTNSIFKAPML----FFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVA 1017
+ AS++ N +F+ + FFDS G+I TRL++D+ L I F V
Sbjct: 820 I-ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVI 878
Query: 1018 ASGTELLAIIGIMTFVTWQV--LVVAIFAMVA 1047
+ ++A IG+ F WQ+ L++AI +VA
Sbjct: 879 TTLVSMVAGIGLAFFYGWQMALLIIAILPIVA 910
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 17/234 (7%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISG--- 652
F++ I L+G++ ++ Q +A+ G G GKS+++ Y LG I G
Sbjct: 1084 FAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143
Query: 653 -TVN---LYGSIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNF 705
T+N IA VSQ + SI +NI+YG + A+ ++A + + I
Sbjct: 1144 KTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G RG LSGGQKQRI +ARA+ + I L D+ SA+D + + E +
Sbjct: 1204 PEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV-QEALDR 1262
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
A E +T I++ H++ + D I V+ G I + G + +L+ A+ +L
Sbjct: 1263 AREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL-LD 575
VI +G L S + T+ + L + P+R + + + + Q S DR+ + D
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321
Query: 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635
+++ N V ++ + I +F ++ A P L+ +NL I+ + +A G G G
Sbjct: 322 YDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGG 379
Query: 636 KSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGK 682
KS+L+ I SG + +L I V Q + + S ++++NIL G+
Sbjct: 380 KSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 439
Query: 683 PM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
P D+ + A A A D I N G TE+G+RG+ LSGGQKQR+ +AR N+ I
Sbjct: 440 PTATDEEVVEAAKMANAHDF-IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ D+ SA+D + ++ E + + +T ++V H++ ++ D+I+V+E G I ++G
Sbjct: 499 LILDEATSALDLES-ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
Query: 801 NYQELLLAGTAFEQL 815
++EL+ A+E L
Sbjct: 558 THRELIAKQGAYEHL 572
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 190/406 (46%), Gaps = 49/406 (12%)
Query: 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK-FKSLIESRREKEFKWLSE 495
+K +Q + + ++ L+ E+L I Q E K F + R + K +S
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFDKVSNRMRLQGMKMVSA 247
Query: 496 AQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEA 555
+ + +I ++ ++ V++ + L A TI V +++ ++ P
Sbjct: 248 SSISDP---IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP------- 297
Query: 556 LSIMIQVKVSFDRINA------FLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
L + V F R A +LD E D+ +R+ ++++ V+ + F++ P
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV-IERATGDVEFRNVTFTY-PGRD 355
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGTVNLY----- 657
+P LR +NL I + +A+ G G+GKS++ I GEI + Y
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASL 415
Query: 658 -GSIAYVSQTSWIQSGSIRDNILYGKPMDKARY---DKAIKACALDKDINNFDHGDLTEI 713
+A VSQ + + ++ +NI Y + +R + A A A+D IN D+G T I
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVI 474
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
G+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D + + AAL++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKN 529
Query: 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+V+E G I + G + +LL + QL
Sbjct: 530 RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 189/406 (46%), Gaps = 49/406 (12%)
Query: 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK-FKSLIESRREKEFKWLSE 495
+K +Q + + ++ L+ E+L I Q E K F + R + K +S
Sbjct: 192 ISKNMQNTMGQVTTSAEQMLKGHKEVL----IFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 496 AQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEA 555
+ + +I ++ ++ V++ + L A TI V +++ ++ P
Sbjct: 248 SSISDP---IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP------- 297
Query: 556 LSIMIQVKVSFDRINAF------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
L + V F R A +LD E D+ +R+ + ++ ++ + F++ P
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV-IDRATGDLEFRNVTFTY-PGRE 355
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------------GEIPKISGTVNL 656
+P LR +NL I + +A+ G G+GKS++ I G + +L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 657 YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY---DKAIKACALDKDINNFDHGDLTEI 713
+A VSQ + + ++ +NI Y + + +R + A A A+D IN D+G T I
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF-INKMDNGLDTII 474
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
G+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D + + AAL++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQAALDELQKN 529
Query: 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+V+E G I + G + ELL + QL
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + ++G+V L G
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA---LDKDINNF 705
+ VSQ + SI +NI YG Y++ ++A + + I++
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + + E +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV-QEALDK 1216
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
A E +T I++ H++ + D I+V++ G++ + G +Q+LL
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 27/236 (11%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIPKISG-- 652
+FS+ + L+G+NL +K Q +A+ G+ G GKS+ LY L + I G
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINN 704
T+N L I VSQ + + +I +NI YG+ MD+ +KA+K I
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE--IEKAVKEANAYDFIMK 511
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-----VVQ 566
Query: 765 AALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +LV
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + ++G+V L G
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA---LDKDINNF 705
+ VSQ + SI +NI YG Y++ ++A + + I++
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + + E +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV-QEALDK 1216
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
A E +T I++ H++ + D I+V++ G++ + G +Q+LL
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 27/236 (11%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIPKISG-- 652
+FS+ + L+G+NL +K Q +A+ G+ G GKS+ LY L + I G
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINN 704
T+N L I VSQ + + +I +NI YG+ MD+ +KA+K I
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE--IEKAVKEANAYDFIMK 511
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-----VVQ 566
Query: 765 AALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +LV
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 186/414 (44%), Gaps = 53/414 (12%)
Query: 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWL 493
+K +K A S ++L K++ +E +F + S R++ K +
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 494 SEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553
S + VI ++ + +V+FL + A L T V + + + P
Sbjct: 246 SAQSIADP---VIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP----- 297
Query: 554 EALSIMIQVKVSFDRINAF------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607
L + V F R A L+D E D+ + ++ + V +++ F++ +
Sbjct: 298 --LKALTSVTSEFQRGMAACQTLFGLMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK 354
Query: 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL--LYAILGEIPKISGTV----------- 654
P L V+ I + +A+ G G+GKS++ L+ ++ SG++
Sbjct: 355 -EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHDVRDYK 411
Query: 655 --NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKAR--YDKAIKACALDKDINNFDHGDL 710
NL A VSQ + + +I +NI Y + R ++A + + I N G
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK- 769
T IG+ G +LSGGQ+QR+ +ARA+ DA + + D+ SA+D + + AAL++
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-----ERAIQAALDEL 526
Query: 770 ---KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820
KTV+++ H++ + + D ILV++ G+I + G + +LL A+ QL HR
Sbjct: 527 QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL---HR 577
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++ +P + +L I A+ G G+GKS++L +L SGT++L G
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD----IN 703
I VSQ + S SI +NI YG + + I+ A + I
Sbjct: 408 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
NF G T +G++G+ LSGGQKQRI +ARA+ + I L D+ SA+DA L E +
Sbjct: 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 526
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +TV+++ H++ + + + VL+ G+IT+ G ++ELL
Sbjct: 527 DRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSI 1004
+ A+A+ VY + + + FS SI + + FFD T G ++ RLSSD ++
Sbjct: 76 AAANAIRVYLMQTSGQRIVNRLRTSLFS----SILRQEVAFFDKTRTGELINRLSSDTAL 131
Query: 1005 LDFDIPFSIVFVAASGTELLAIIGIM--------TFVTWQVLVVAIFAMVAVRFVQ 1052
L + ++ +G + I +M TFV V V+I A++ R+++
Sbjct: 132 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLR 187
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 18/223 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++ +P + +L I A+ G G+GKS++L +L SGT++L G
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD----IN 703
I VSQ + S SI +NI YG + + I+ A + I
Sbjct: 439 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 498
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
NF G T +G++G+ LSGGQKQRI +ARA+ + I L D+ SA+DA L E +
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEAL 557
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +TV+++ H + + + + VL+ G+IT+ G ++ELL
Sbjct: 558 DRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELL 600
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSI 1004
+ A+A+ VY + + + FS SI + + FFD T G ++ RLSSD ++
Sbjct: 107 AAANAIRVYLMQTSGQRIVNRLRTSLFS----SILRQEVAFFDKTRTGELINRLSSDTAL 162
Query: 1005 LDFDIPFSIVFVAASGTELLAIIGIM--------TFVTWQVLVVAIFAMVAVRFVQ 1052
L + ++ +G + I +M TFV V V+I A++ R+++
Sbjct: 163 LGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLR 218
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 171/373 (45%), Gaps = 41/373 (10%)
Query: 460 SEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIF 519
E ++ + +IKL + EEK + E K ++AQ+ + V+ P +++ V
Sbjct: 220 EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI---FSGVL----PPLMNMVNN 272
Query: 520 LGCALTG--------SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINA 571
LG AL + TI T + R P+ + +++ S +RI
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 572 FLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGS 631
+LD E DD + L++ ++ + FS+D + P L+ + IK QK+A+ G
Sbjct: 333 -ILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGP 389
Query: 632 VGAGKSSLLYAILG--------------EIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN 677
G+GK++++ ++ +I KI + +L SI V Q + + S ++++N
Sbjct: 390 TGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS-SLRSSIGIVLQDTILFSTTVKEN 448
Query: 678 ILYGKPMDKARYDKAIKACAL----DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
+ YG P D+ IK A D I + G T + G +LS GQ+Q + + RA
Sbjct: 449 LKYGNP---GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793
+ I + D+ S VD T ++ + +E KT I++ H++ + D I+VL
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRD 564
Query: 794 GQITQSGNYQELL 806
G+I + G + EL+
Sbjct: 565 GEIVEMGKHDELI 577
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEI 647
+++ + NFS+ + TL+ +N I A+ G G+GKS++ Y G+I
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 648 PKISG-TVNLYGS------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACAL 698
KI G VN Y I V Q + + + +I+ NILYGK +D + KA K+ L
Sbjct: 77 -KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQL 134
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I T +G +G+ LSGG++QRI +AR + D I +FD+ S++D+ T L
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY-L 193
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
F + V + +T+I++ H++ +S + I++L G+I + G +++LL + ++ N
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 11 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 68
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 69 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 187
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 9 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 66
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 185
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 23/222 (10%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISGT-------VNLYG 658
TL+ V+ + Q +A+ G GAGKS++L Y I +I G +L
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 659 SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I V Q + + + +I DNI YG+ + A +A + I F G T++G+RG
Sbjct: 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVI 773
L LSGG+KQR+ +AR + I L D+ SA+D T + A+L K +T I
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALD-----TSNERAIQASLAKVCANRTTI 243
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+V H++ + D+ILV++ G I + G ++ LL G + +
Sbjct: 244 VVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 11 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 68
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 69 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 187
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ H++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+F++D I LR ++ + + IA G G GKS++ + +G + + G
Sbjct: 8 DFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 660 ------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINNF 705
I +VSQ S I +G+IR+N+ YG D D + + + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + ++ + + +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDS 184
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
++ +T +++ H++ + + D+I +E GQIT SG + EL+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 22/308 (7%)
Query: 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575
+V++ G L + + +I L + + MI L+ +++ S R+ L +
Sbjct: 263 AVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNE 322
Query: 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635
+ ++L + SV + F + E P L GVN +K +AV G G+G
Sbjct: 323 KPAIEEADNALALPNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 636 KSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGK 682
KS+L+ I I G V +L G I+ V Q + + SG+I++N+ +G+
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 683 PMDKARYDKAIKACALDKDINNF----DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738
+ A D+ ++A + + I++F G + + + G N SGGQKQR+ +ARA+
Sbjct: 442 --EDATDDEIVEAAKIAQ-IHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
+ + DD S+VD T + + + + T ++T ++ D+ILVL G++
Sbjct: 499 KVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 799 SGNYQELL 806
G ++ELL
Sbjct: 558 FGTHKELL 565
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 9 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 66
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 67 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 185
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ ++ + DRI+V+E G+I + G ++ELL
Sbjct: 186 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSI 660
F + P+ + L +NL IK + I + G G+GKS+L I IP+ +G V + G
Sbjct: 15 FRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHD 72
Query: 661 AYVSQTSWIQ-------------SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
++ +W++ + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKI 191
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TVI++ ++ + DRI+V+E G+I + G ++ELL
Sbjct: 192 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 89.7 bits (221), Expect = 8e-18, Method: Composition-based stats.
Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIP 648
V+ Q+ +F++ + L+G+ ++ + A+ G G+GKS++ LY G
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 649 KISGTV-------NLYGSIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
+ G L+ +A V Q + S+++NI YG KP + A+K+ A
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA- 133
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+ + G LSGGQ+Q + LARA+ + + DD SA+DA++ +
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + + E+ ++V+L+T + + + D IL LEGG I + G +Q+L+ + +V
Sbjct: 194 -EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 252
Query: 817 NAHRDA 822
A DA
Sbjct: 253 QAPADA 258
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ + G V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L G +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----H 753
I+ F G TE+G+ G LSGGQ+Q + LARA+ + + D SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
L+ A+ +TV+L+THQ+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWAS---RTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 814 QLV 816
+V
Sbjct: 252 SMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 26/243 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIP 648
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ LY G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 649 KISGTV-------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ G L+ +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----H 753
I+ F G TE+G+ G LSGGQ+Q + LARA+ + + D+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
L+ A+ +TV+L+T Q+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWAS---RTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 814 QLV 816
+V
Sbjct: 252 SMV 254
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 33/223 (14%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660
++RGV+ I+ + + + G G+GK+++L I G G V + G ++
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 661 AYVSQT-SWIQSGSIRDNILYG-----KPMDK--ARYDKAIKACALDKDINNFDHGDLTE 712
V Q + Q ++ DN+ +G P D+ AR + ++ L+ N F H
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL--FNECVMAALEKK 770
LSGGQ+QR+ LARA+ + LFD+PF+A+D L F V +
Sbjct: 145 ------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL-LAGTAF 812
+V + Q E L DR+LVL G + Q G +E+ GT F
Sbjct: 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------S 659
+L ++L ++ + + G GAGK+ L I G +P SG + L G
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHD 73
Query: 660 IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
IA+V Q S +++ N+ +G M K + K + A D I + + + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-------LDRNPL 126
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILV 775
LSGG++QR+ LARA+ + I L D+P SA+D T +++ L KK TV+ +
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE--MLSVLHKKNKLTVLHI 184
Query: 776 TH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
TH Q E DRI V+ G++ Q G +E+
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAILGEIP 648
VK Q+ +F++ + L+G+ + + A+ G G+GKS++ LY G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 649 KISGTV-------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ G L+ +A V Q + S R+NI YG + + + I A A++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 702 ----INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----H 753
I+ F G TE+G+ G L+ GQ+Q + LARA+ + + D+ SA+DA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
L+ A+ +TV+L+T Q+ IL L+ G + + G + +L+ G +
Sbjct: 195 VQRLLYESPEWAS---RTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 814 QLV 816
+V
Sbjct: 252 SMV 254
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWIQSG 672
+ +N D+ +AV G G GKS+LL +LG I G + +Y SI +V Q S +
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSGGQKQRIQLA 731
S+ D +L G+ + K K+ + D+ +LT + +R +LSGGQ+Q I +A
Sbjct: 82 SVLDIVLMGRSTHINTFAKP-KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIA 140
Query: 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQ 778
RA+ ++ + L D+P SA+D + + + +A + TV+ THQ
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 44/229 (19%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ L +NL IK + +A+ G G+GKS+LLY I G SG +
Sbjct: 14 GNFT--------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65
Query: 659 ----------SIAYVSQT-SWIQSGSIRDNILYGKPMDKA---RYDKAIKACA----LDK 700
++ V Q + ++ NI + + KA DK ++ A +DK
Sbjct: 66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK 125
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+N + LSGGQ+QR+ +ARA+ + ++ L D+P S +DA +
Sbjct: 126 LLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174
Query: 761 ECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
E + L+K+ T + VTH Q E L+ DRI V+ G+I Q G E+
Sbjct: 175 E--LKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------IAY 662
L+ VN + + + V G G+GK++LL IL + +G + L GS + Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLL-KILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 663 VSQ--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
V Q +S I ++ +++ + +D++ K IK ++ D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAAD-------P 138
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LNLSGGQKQR+ +A + D D+P S +D + +F E K +ILVTH
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELL 806
++E+L ++D IL + G I G+++E +
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFV 227
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 26/218 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGTVNLYGSIA 661
++ L+G+N+ I+ + + V G G+GKS+ L + GEI I +NL
Sbjct: 15 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLKAKDT 72
Query: 662 YVSQT-----------SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+++ + ++ +NI PM ++ + KA A K + D L
Sbjct: 73 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPRE-KAEA--KAMELLDKVGL 128
Query: 711 TEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGGQ QR+ +ARA+ + I LFD+P SA+D + + A E
Sbjct: 129 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH++ F EV DR+L ++GG I + G ++L
Sbjct: 189 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 26/218 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGTVNLYGSIA 661
++ L+G+N+ I+ + + V G G+GKS+ L + GEI I +NL
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI--IIDGINLKAKDT 93
Query: 662 YVSQT-----------SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+++ + ++ +NI PM ++ + KA A K + D L
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPRE-KAEA--KAMELLDKVGL 149
Query: 711 TEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGGQ QR+ +ARA+ + I LFD+P SA+D + + A E
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH++ F EV DR+L ++GG I + G ++L
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D+P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D+P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 43/237 (18%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
SV++Q +W + + +NLDI + + G G GKS+LL I G SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG- 58
Query: 654 VNLYGSIAYVSQTSWIQSG--------------SIRDNILYGKPMDKARYDKAIKACALD 699
+L+ ++ T + G S+ +N+ +G +K
Sbjct: 59 -DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG-----------LKLAGAK 106
Query: 700 KDINNFDHGDLTEIGQ-------RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K++ N + E+ Q + LSGGQ+QR+ + R + + ++L D P S +DA
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 753 HTAATLFNECVMAALEK---KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E ++ L K +T+I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 167 ALRVQMRIE--ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 40/229 (17%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ + +NL IK + + + G G GK++ L I G G + +G
Sbjct: 23 GNFT--------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGD 73
Query: 659 -------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDI 702
S+ + S W ++ +NI + K K DK ++ A I
Sbjct: 74 RDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 132
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E
Sbjct: 133 EEL-------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE- 184
Query: 763 VMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLL 807
+ L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+ L
Sbjct: 185 -IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 40/229 (17%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
GNF+ + +NL IK + + + G G GK++ L I G G + +G
Sbjct: 22 GNFT--------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGD 72
Query: 659 -------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDI 702
S+ + S W ++ +NI + K K DK ++ A I
Sbjct: 73 RDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 131
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E
Sbjct: 132 EEL-------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE- 183
Query: 763 VMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLL 807
+ L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+ L
Sbjct: 184 -IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L I + + V G+ G+GKS+LL + G I SG V G +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK--------KGY 76
Query: 673 SIRDNI--LYGKPMDKARYDK-------AIKACALDKD-------INNFDHGDLTEIGQR 716
IR NI + P D+ ++ A+K D+D F D R
Sbjct: 77 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 717 -GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+R+ +A + ++ DI + D+P +D L KTVIL+
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 776 THQVE-FLSEVDRILVLEGGQITQSGNYQELL 806
+H +E ++ VDR++VLE G+ G E L
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 228
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L I + + V G+ G+GKS+LL + G I SG V G +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK--------KGY 74
Query: 673 SIRDNI--LYGKPMDKARYDK-------AIKACALDKD-------INNFDHGDLTEIGQR 716
IR NI + P D+ ++ A+K D+D F D R
Sbjct: 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 717 -GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+R+ +A + ++ DI + D+P +D L KTVIL+
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194
Query: 776 THQVE-FLSEVDRILVLEGGQITQSGNYQELL 806
+H +E ++ VDR++VLE G+ G E L
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+ ++LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D + A E KT++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+VTH++ F V ++ L G+I + G+ +++
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-----------YGSIAYV 663
GV+ ++K + +A+ G G GK++ L + G SG + Y + V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80
Query: 664 SQT-SWIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
Q + ++ +NI L + + K +K + A I+N + ++
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-------LDRKPTQ 133
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGGQ+QR+ LARA+ + LFD+P S +DA+ + E + L+++ T + VT
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE--IKHLQQELGITSVYVT 191
Query: 777 H-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
H Q E ++ RI V G++ Q G E+
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----NLYGS------ 659
+ ++ ++L+IK + + + G G GK++ L I G G + NL
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 660 -------IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHG 708
+A V Q+ + ++ DNI + + + K DK ++ A +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA--------EXL 130
Query: 709 DLTEI-GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LTE+ ++ LSGGQ+QR+ L RA+ ++L D+P S +DA E + L
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE--LKKL 188
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+++ T I VTH QVE + DRI V G++ Q G E+
Sbjct: 189 QRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 21/208 (10%)
Query: 616 VNLDIKWAQKIAVC-GSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYV 663
+N+D + + V G GAGKS L I G + G V L G+ I +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 664 SQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + S+ NI YG + +K G + ++ LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK------LGIAHLLDRKPARLSG 129
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VTHQ-VE 780
G++QR+ LARA+ + L D+P SAVD T L E E IL VTH +E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLA 808
D + V+ G+I + G +EL A
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSA 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 59/231 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS++L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML--------------NIIGCLDKPTEG 60
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 61 E-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
T E +M L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ +R ++L++K + + + G G GK++ L I G G + +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 659 ------SIAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHG 708
IA V Q+ + ++ DNI + + + + D+ ++ A +
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVA--------ELL 127
Query: 709 DLTEI-GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LTE+ ++ LSGGQ+QR+ L RA+ ++L D+P S +DA + E + L
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE--LKKL 185
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+++ T I VTH QVE ++ DRI V+ G + Q G+ E+
Sbjct: 186 QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNL---YGS 659
L ++ I Q++ + G G+GKS+LL A L GEI +I G ++ L +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI-QIDGVSWDSITLEQWRKA 95
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+ Q +I SG+ R N+ K L I F + G
Sbjct: 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LS G KQ + LAR+V + A I L D+P + +D T + + A TVIL ++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCEARI 214
Query: 780 EFLSEVDRILVLEGGQITQSGNYQEL 805
E + E D+ LV+E ++ Q + EL
Sbjct: 215 EAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 39/220 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLY---------GSIAY 662
L VN++I+ ++ + G GAGK++ + I G ++P T LY G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIV 77
Query: 663 VSQTSWI----QSGSIRDNI---------LYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+ I Q+ ++ N+ L M K K ++ A DI++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV---- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAA 766
+ LSGGQ+QR+ LARA+ D + L D+PFS +DA +A L E V +
Sbjct: 134 ---LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQSR 189
Query: 767 LEKKTVILVTHQ-VEFLSEVDRILVLEGGQITQSGNYQEL 805
L T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 190 L-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 43/243 (17%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
D +K++E N+++ L+G+N++IK + A+ G G GKS+L G + S
Sbjct: 5 DYILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 652 GTV---------------NLYGSIAYVSQTSWIQ--SGSIRDNILYGK-----PMD--KA 687
G + L SI V Q Q S S+ ++ +G P D +
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK 122
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
R D A+K ++ + H LS GQK+R+ +A + + + + D+P
Sbjct: 123 RVDNALKRTGIEHLKDKPTHC-----------LSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 748 SAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803
+ +D + + ++ ++K+ T+I+ TH ++ + D + V++ G++ GN +
Sbjct: 172 AGLDPMGVSEIMK--LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 804 ELL 806
E+
Sbjct: 230 EVF 232
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 59/232 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS++L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML--------------NIIGCLDKPTE- 59
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQS 799
T E +M L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 38/221 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-- 668
P L ++L + + + + G+ G GK++LL + G SG ++L G + T+
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 669 --------IQSG------SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDH 707
+Q G ++ NI YG ++ R + ++ + + + H
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LSGGQ+QR LARA+ D ++ L D+PFSA+D + E ++AAL
Sbjct: 138 -----------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIAAL 185
Query: 768 EK--KTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
K+ + V+H + E L DRI V++ G+I Q+ + EL
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 41/221 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLY-------------- 657
L VN++I+ ++ + G GAGK++ + I G ++P T LY
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIV 77
Query: 658 ----GSIAYVSQTSWIQSGSIR--DNI---LYGKPMDKARYDKAIKACALDKDINNFDHG 708
I V QT W ++ +NI L M K K ++ A DI++
Sbjct: 78 PPEDRKIGMVFQT-WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV--- 133
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMA 765
+ LSG Q+QR+ LARA+ D + L D+PFS +DA +A L E V +
Sbjct: 134 ----LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQS 188
Query: 766 ALEKKTVILVTHQ-VEFLSEVDRILVLEGGQITQSGNYQEL 805
L T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 189 RL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY----GSIAYVSQTSW 668
L+ ++ I K + G GAGK++LL + P SGTVNL+ G + Y ++T
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 669 IQSGSIRDNIL----YGKPMDKARYDKAIKACA----LDKDINNFDHGDLTEIGQRGLN- 719
G + ++L G+ + A K+ +D +I N H L +G
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQ 156
Query: 720 -----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVD--AHTAATLFNECVMAALEKKTV 772
LS G+KQR+ +ARA+ + + D+P + +D A + + + +
Sbjct: 157 QYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAX 216
Query: 773 ILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806
I VTH +E ++ +IL+L+ GQ Q G +++L
Sbjct: 217 IYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 59/231 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666
E I L+ VNL+IK + +++ G G+GKS+ L N+ G + ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXL--------------NIIGCLDKPTEG 60
Query: 667 SWIQSGSIRDNILYGKPMDKARYDK---------------AIKACAL------------- 698
+ +I+ N L + K R DK A++ L
Sbjct: 61 E-VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 699 DKDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
++ + E+ +R N LSGGQ+QR+ +ARA+ N+ I L D+P A+D+
Sbjct: 120 ERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSK 179
Query: 754 TAATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
T E + L+K KTV++VTH + +RI+ L+ G++ +
Sbjct: 180 TG-----EKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 32/269 (11%)
Query: 553 PEALSIMIQVKVSFDRINAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSWDPEL 608
P I Q K + + IN FL + L +++VR I K+ V+I+ P L
Sbjct: 235 PGVYGIFSQPKGTRNGINEFLRGY-LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 609 AIP----TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
L +IK + I + G G GK++ + + G G + ++AY
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP 353
Query: 665 QTSWIQS---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-L 720
Q +I++ G++ + L K +D ++ + L K + D D R +N L
Sbjct: 354 Q--YIKADYEGTVYE--LLSK-IDASKLNSNFYKTELLKPLGIIDLYD------REVNEL 402
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQ 778
SGG+ QR+ +A + DADIYL D+P + +D + + + EK KT ++V H
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV-SRAIRHLXEKNEKTALVVEHD 461
Query: 779 VEFLSEV-DRILVLEGGQITQSGNYQELL 806
V + V DR+ V EG + G Y L
Sbjct: 462 VLXIDYVSDRLXVFEG----EPGKYGRAL 486
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQTSWIQS------- 671
+K + + G G GKS+ + + G+ IP + G + + + + + +Q+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 672 GSIRDNILYGKPMDKARY----DKAIKACALDKDINNFDHGDLTEIG---------QRGL 718
G IR P+ K +Y KA+K ++ + G L E+ +R +
Sbjct: 104 GEIR-------PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 719 -NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+LSGG+ QR+ +A A+ +A Y FD+P S +D + E K+V++V H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 778 Q---VEFLSEVDRILVLEGG 794
+++LS++ ++ E G
Sbjct: 217 DLAVLDYLSDIIHVVYGEPG 236
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNLYGS------------ 659
L+G++L +K + +++ G+ G+GKS+LLY ILG + G V L G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 660 -----IAYVSQTSW-IQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHG 708
+ +V Q + I + +N++ GKP +A+ + ++ G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG-------EYLLSELGLG 131
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
D ++ ++ LSGG++QR+ +ARA+ N+ + D+P +D+ + + +
Sbjct: 132 D--KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQI 796
++++VTH+ E R L ++ G++
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMKDGKV 217
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---------------Y 657
L GV++ + + G G+GKS+L+ I G + G V Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGK------PMDKARYDKAI--KACALDKDINNFDHGD 709
G + ++ ++ +N+L G+ P++ Y K I + ++K +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 710 LTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + R LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 769 KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQE 804
T +++ H+++ L+ +D + V+ GQI G +E
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L+ AI +G V+ + + +T +++
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPT-QEECRTVYVEHD 503
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------MIAMPISALSGG 552
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 609
Query: 784 EV-DRILVLEGGQITQ-SGNYQELL---LAGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 648
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 858 VAEVDMKEALASGQFR-------PLTRKEIEEHCSMLGLDPEI--VSHSRI-----RGL- 902
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTH 777
SGGQK ++ LA + + + D+P + +D + L AL+ + VI++TH
Sbjct: 903 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIITH 956
Query: 778 QVEFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G++T SG+
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMTPSGH 981
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
DV R +L + R VK G+F + E +I+ + I + G G GK++ +
Sbjct: 337 DVERETLVEYPRLVK-DYGSFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVK 386
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQS---GSIRDNILYGKPMDKARYDKAIKACAL 698
+ G G V ++AY Q +I++ G++ + L K +D ++ + L
Sbjct: 387 MLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE--LLSK-IDSSKLNSNFYKTEL 441
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
K + D D + +LSGG+ QR+ +A + DADIYL D+P + +D +
Sbjct: 442 LKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEV-DRILVLEG 793
+ + +EK KT ++V H V + V DR++V EG
Sbjct: 497 -SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ- 778
LSGG+ QR+ +A A+ A Y FD+P S +D + A E K V++V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 779 --VEFLSEVDRILVLEGG 794
+++LS+V ++ E G
Sbjct: 275 AVLDYLSDVIHVVYGEPG 292
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
DV R +L + R VK G+F + E +I+ + I + G G GK++ +
Sbjct: 351 DVERETLVEYPRLVK-DYGSFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVK 400
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQS---GSIRDNILYGKPMDKARYDKAIKACAL 698
+ G G V ++AY Q +I++ G++ + L K +D ++ + L
Sbjct: 401 MLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYE--LLSK-IDSSKLNSNFYKTEL 455
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
K + D D + +LSGG+ QR+ +A + DADIYL D+P + +D +
Sbjct: 456 LKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 759 FNECVMAALEK--KTVILVTHQVEFLSEV-DRILVLEG 793
+ + +EK KT ++V H V + V DR++V EG
Sbjct: 511 -SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGG+ QR+ +A A+ A Y FD+P S +D + A E K V++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 779 ---VEFLSEVDRILVLEGG 794
+++LS+V ++ E G
Sbjct: 288 LAVLDYLSDVIHVVYGEPG 306
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L AI +G V+ + + +T +++
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEEC-RTVYVEHD 503
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------XIAXPISALSGG 552
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 553 WKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 609
Query: 784 EV-DRILVLEGGQITQ-SGNYQELL---LAGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 648
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 731 YTHENCRIAYIKQHAF 746
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 858 VAEVDXKEALASGQFR-------PLTRKEIEEHCSXLGLDPEI--VSHSRI-----RGL- 902
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTH 777
SGGQK ++ LA + + + D+P + +D + L AL+ + VI++TH
Sbjct: 903 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIITH 956
Query: 778 QVEFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G+ T SG+
Sbjct: 957 SAEFTKNLTEEVWAVKDGRXTPSGH 981
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L L +K A++ +CG G GKS+L AI +G V+ + + +T +++
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEEC-RTVYVEHD 497
Query: 671 -SGSIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
G+ D + G +A DK I+ D+ I LSGG
Sbjct: 498 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-----------XIAXPISALSGG 546
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
K ++ LARAV +ADI L D+P + +D A L N + T I ++H FL
Sbjct: 547 WKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISHDSVFLD 603
Query: 784 EV-DRILVLEGGQITQ-SGNYQELL---LAGTAFEQLVN 817
V + I+ EG ++ + GN+ E + A A+E+L N
Sbjct: 604 NVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSN 642
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 666 VKVTNXEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Query: 655 NLYGS--IAYVSQTSW 668
+ + IAY+ Q ++
Sbjct: 725 YTHENCRIAYIKQHAF 740
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+A V + SG R P+ + ++ LD +I H + RGL
Sbjct: 852 VAEVDXKEALASGQFR-------PLTRKEIEEHCSXLGLDPEI--VSHSRI-----RGL- 896
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTH 777
SGGQK ++ LA + + + D+P + +D + L AL+ + VI++TH
Sbjct: 897 -SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIITH 950
Query: 778 QVEFLSEV-DRILVLEGGQITQSGN 801
EF + + + ++ G+ T SG+
Sbjct: 951 SAEFTKNLTEEVWAVKDGRXTPSGH 975
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 43/225 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGS-IAYVSQT- 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE 76
Query: 667 ---------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINN 704
+ + S ++ N+ L P D K R + + L ++
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++ ++
Sbjct: 137 YPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LL 183
Query: 765 AALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ ++ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR 675
V+L I + +A+ G GAGKS+LL + G + G +L G + SW R
Sbjct: 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ----NLNSWQPKALAR 85
Query: 676 DNILYGK--------------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-L 720
+ + M +A Y + AL + + D + QR L
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA---QTDCLALAQRDYRVL 142
Query: 721 SGGQKQRIQLARAVY-----NDADIYLF-DDPFSAVDA-HTAATLFNECVMAALEKKTVI 773
SGG++QR+QLAR + +LF D+P SA+D H TL + E V
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202
Query: 774 LVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810
V H + + DRI++L G++ G +E+L A T
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGS-IAYVSQT 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSES 98
Query: 667 ----------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDIN 703
+ + S ++ N+ L P D K R + + L +
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
++ NLSGGQKQR+ +ARA+ ++ + L D SA+D T ++ +
Sbjct: 159 SYPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--L 205
Query: 764 MAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ + ++ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 43/225 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGS-IAYVSQT- 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESE 99
Query: 667 ---------------SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINN 704
+ + S ++ N+ L P D K R + + L ++
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ NLSGGQKQR+ +ARA+ ++ + L D SA+D T ++ ++
Sbjct: 160 YPS-----------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LL 206
Query: 765 AALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+ ++ T++L+TH+ + + + D + V+ G++ + E+
Sbjct: 207 KDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L+G++ +I+ + + G GAGK++ L I I SG V ++G + +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG------KNVVEEPH 84
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNF---DHGDLTEIGQRGLNLSG-GQK--- 725
+R I Y P + Y + ++ + + F ++ E+ +R ++G G+K
Sbjct: 85 EVRKLISY-LPEEAGAY-RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 726 ----------QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
+++ +ARA+ + + + D+P S +D A + A+ E T+++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 776 TH---QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+H +VEFL DRI ++ G I ++G +EL
Sbjct: 203 SHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 28/211 (13%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYGSIAYVSQTSWIQ 670
G++LDI A+ G +GKS+++ A+ +P +SG V G + ++
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINN-----FDHGDLTE------------- 712
++ L + ++ + +K KD + H +L E
Sbjct: 86 KIRWKEIALVPQAAQQS-LNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 713 ---IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ L LSGG KQR+ +A A+ D + + D+P SA+D T A +
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKML 204
Query: 770 K-TVILVTHQVEFLSEV-DRILVLEGGQITQ 798
K T+I VTH + +E+ D++ V+ GG + +
Sbjct: 205 KITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 34/188 (18%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA-----YVSQT 666
+L +NL++ +K+ + G G+GK++LL AI G +P SG + + G Y+ +
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIRYS 77
Query: 667 SWI----QSGSIRDNILYG----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ + + G ++I+Y K +D+ + + +KA L ++I + ++
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI----------LRRKLY 127
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILV 775
LS GQ ++ + A+ + +I D+PF VDA H + E K ILV
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILV 181
Query: 776 THQVEFLS 783
TH+++ L+
Sbjct: 182 THELDMLN 189
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 720 LSGGQKQRIQLARAVYN--DADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTV 772
LSGG+ QRI+LA + + +Y+ D+P ++ H N+ ++A L+ T+
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEP--SIGLHQRD---NDRLIATLKSMRDLGNTL 257
Query: 773 ILVTHQ------VEFLSEVDRILVLEGGQITQSGNYQELL 806
I+V H ++L ++ + GG++ +G +E++
Sbjct: 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QR++LA ++ N +Y+ D+P + + A L +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TV+++ H ++ + D I+ L GGQI G +E+
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
AI ++G++L + Q + + G+ GAGK++ L AI G + G + G
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 660 -----IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
IA V + I ++ +N+ G R DK L+ + F L E
Sbjct: 78 INRXGIALVPEGRRIFPELTVYENLXXGA---YNRKDKEGIKRDLEWIFSLFPR--LKER 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
+ Q G LSGG++Q + + RA+ + + D+P + + +F E + ++ T
Sbjct: 133 LKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTT 191
Query: 773 ILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELL 806
IL+ Q L VLE GQI G ELL
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P L + + I+ + G G GK++LL I + + G + +Y + I
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNGVPITKVKGKI- 80
Query: 671 SGSIRDNILYGKPMDKARYDKAIKA---CALDKD--INNFDHGDLTEIGQRGLNLSGGQK 725
+ + I+ + + Y KA+ + ++K+ ++ + ++ ++ ++ LS G
Sbjct: 81 -FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTI 139
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
+R+QLA + +A+IY+ DDP A+D + + + ++ L++K +++++ + E
Sbjct: 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIISSREEL 194
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 712 EIGQRGLNLSGGQKQRIQLA---RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
++GQ LSGG+ QRI+LA R +Y+ D+P + L
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 769 KKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQEL 805
TVI++ H ++ + D I+ L EGG I +G +E+
Sbjct: 858 GNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 720 LSGGQKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTV 772
LSGG+ QRI+LA + + IY+ D+P + H T E ++ L+K TV
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEP--TIGLHPRDT---ERLIKTLKKLRDLGNTV 519
Query: 773 ILVTHQVEFLSEVDRIL 789
I+V H E + D I+
Sbjct: 520 IVVEHDEEVIRNADHII 536
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLA---RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+GQ LSGG+ QRI+LA R +Y+ D+P + + L + V
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 770 KTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQELLLA 808
TVI V H+++ ++ D +L + +GG++ G E+ A
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL +++G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKILSALSQ 181
Query: 770 K--TVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ +++ +H + L R +L+GG++ SG +E+L G F +L +
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRMLIS 247
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ- 778
LSGG QR+ +A ++ +AD+Y+FD P S +D + + + L+ K VI+V H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAIRELLKNKYVIVVDHDL 197
Query: 779 --VEFLSEVDRILVLEG---GQITQS 799
+++L+++ I+ E G++++S
Sbjct: 198 IVLDYLTDLIHIIYGESSVYGRVSKS 223
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQTSWIQ-SGSI 674
N + K + I + G G GK++ ++GEI G+V I +Y Q + G++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLARA 733
+ + ++ A D + +++ +L + + +N LSGG+ Q++ +A
Sbjct: 348 Q------QYLENASKDALSTSSWFFEEVTK--RLNLHRLLESNVNDLSGGELQKLYIAAT 399
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-ILVTHQVEFLSEV-DRILVL 791
+ +AD+Y+ D P S +D + E+K V ++ H + + DRI+V
Sbjct: 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459
Query: 792 EG 793
+G
Sbjct: 460 KG 461
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL +++G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARMAGMTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D P ++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSAL--DKILSALSQ 181
Query: 770 K--TVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ +++ +H + L R +L+GG++ SG +E+L G F +L +
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRMLIS 247
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL + +G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALSQ 181
Query: 770 KTVILV--THQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ + +V +H + L R +L+GG+ SG +E+L G F +L +
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRXLIS 247
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TSWIQSG---- 672
+++ + + + G GAGKS+LL + +G + GSI + Q +W +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-------ARXAGXTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 673 ----SIRDNILYGKPM---------DKAR---YDKAIKACALDKDINNFDHGDLTEIGQR 716
S + + P+ DK R + A ALD ++G+
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRS 123
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L + +++AL +
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALCQ 181
Query: 770 KTVILV--THQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNA 818
+ + +V +H + L R +L+GG+ SG +E+L G F +L +
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIEG 241
Query: 819 HRDAIT 824
HR I+
Sbjct: 242 HRXLIS 247
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEK 769
I Q +LSGG+ QR+ + A+ ADIYL D+P + +D+ + + ++ K
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NK 518
Query: 770 KTVILVTHQVEFLSEV-DRILVLEG 793
KT +V H + + D+++V EG
Sbjct: 519 KTAFIVEHDFIMATYLADKVIVFEG 543
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILVT 776
LSGG+ QR + + +AD+Y+FD+P S +D AA + + K VI V
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT---KYVICVE 278
Query: 777 HQVEFLS 783
H + L
Sbjct: 279 HDLSVLD 285
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVSQTSWI 669
LRG++LD+ + A+ G G+GKS+L + G + GTV G + +S
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95
Query: 670 QSGSIRDNILYGKPMDKARYDK---------AIKACALDKDINNFDHGDLTE-------- 712
G + + P++ A+++ + ++ FD DL E
Sbjct: 96 GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 713 ---IGQRGLNL--SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+ R +N+ SGG+K+R + + + ++ + D+ S +D + +
Sbjct: 153 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 768 EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNY 802
K++ I+VTH L + D + VL G+I +SG++
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVSQTSWI 669
LRG++LD+ + A+ G G+GKS+L + G + GTV G + +S
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 76
Query: 670 QSGSIRDNILYGKPMDKARYDK---------AIKACALDKDINNFDHGDLTE-------- 712
G + + P++ A+++ + ++ FD DL E
Sbjct: 77 GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 713 ---IGQRGLNL--SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+ R +N+ SGG+K+R + + + ++ + D+ S +D + +
Sbjct: 134 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 193
Query: 768 EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNY 802
K++ I+VTH L + D + VL G+I +SG++
Sbjct: 194 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 720 LSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGG+ QRI+LA + + +Y+ D+P + L T+I+V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 778 QVEFLSEVDRILVL------EGGQITQSGNYQELLLAGTAFEQLVNAHRDAITG 825
+ + D I+ + GG+I SG Y ELL ++D+ITG
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL-----------RNKDSITG 624
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+GQ LSGG+ QR++LA + + +Y+ D+P + + L N V+ L
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN--VINGLVD 914
Query: 770 K--TVILVTHQVEFLSEVDRILVL 791
K TVI++ H ++ + D I+ L
Sbjct: 915 KGNTVIVIEHNLDVIKTSDWIIDL 938
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 720 LSGGQKQRIQ------LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG++ I LA D + D+ FS++D + V+ LE+ K
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKI--ASVLKELERLNKV 337
Query: 772 VILVTHQVEFLSEVDRILVLEGG 794
++ +TH EF DR L + GG
Sbjct: 338 IVFITHDREFSEAFDRKLRITGG 360
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 720 LSGGQKQRIQ------LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG++ I LA D + D+ FS++D + V+ LE+ K
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKI--ASVLKELERLNKV 337
Query: 772 VILVTHQVEFLSEVDRILVLEGG 794
++ +TH EF DR L + GG
Sbjct: 338 IVFITHDREFSEAFDRKLRITGG 360
>pdb|1QO0|D Chain D, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir.
pdb|1QO0|E Chain E, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir
Length = 196
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 478 FKSLIESRREKEFK-WLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIF 536
F S+ ++R E L+ R ++ + SP ++S +I L C + PL+A +
Sbjct: 57 FTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVL 116
Query: 537 TVLATLRSMGE 547
VL + R + E
Sbjct: 117 PVLVSARRISE 127
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 233 SLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIA 292
S P ++ ++ Y K + + RE + + ++ I N N+ ++R I
Sbjct: 308 SGAPSEQQTYDYAKTILSL--MTREKHPDGKILIIGGSIANF---TNVAATFKGIVRAIR 362
Query: 293 VVVGPLLLYAFVNYSNRGEENLQEGLSIVG 322
GPL + + RG N QEGL ++G
Sbjct: 363 DYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 233 SLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIA 292
S P ++ ++ Y K + + RE + + ++ I N N+ ++R I
Sbjct: 308 SGAPSEQQTYDYAKTILSL--MTREKHPDGKILIIGGSIANF---TNVAATFKGIVRAIR 362
Query: 293 VVVGPLLLYAFVNYSNRGEENLQEGLSIVG 322
GPL + + RG N QEGL ++G
Sbjct: 363 DYQGPLKEHEVTIFVRRGGPNYQEGLRVMG 392
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 537 TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN---DDVRRISLQ 589
T+L + G P + IPE + + Q K FD++ F E+N D + I+L+
Sbjct: 310 TILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGITLK 365
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 116 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 168
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 169 ----KAPGILPRRSVHE 181
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 57 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 109
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 110 ----KAPGILPRRSVHE 122
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 56 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 108
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 109 ----KAPGILPRRSVHE 121
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 81 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 133
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 134 ----KAPGILPRRSVHE 146
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 81 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 133
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 134 ----KAPGILPRRSVHE 146
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRT 845
DR LV EG + ++GN ++ + ++V+A + I G GP+D AG+ A+
Sbjct: 81 DR-LVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQV------ 133
Query: 846 ARPEEPNGIYPRKESSE 862
+ GI PR+ E
Sbjct: 134 ----KAPGILPRRSVHE 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,638,091
Number of Sequences: 62578
Number of extensions: 1054015
Number of successful extensions: 2605
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2336
Number of HSP's gapped (non-prelim): 179
length of query: 1059
length of database: 14,973,337
effective HSP length: 109
effective length of query: 950
effective length of database: 8,152,335
effective search space: 7744718250
effective search space used: 7744718250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)