Query 001528
Match_columns 1059
No_of_seqs 468 out of 3519
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-182 3E-187 1694.9 101.6 852 197-1059 122-982 (1381)
2 PLN03130 ABC transporter C fam 100.0 7E-145 2E-149 1431.0 121.8 1020 22-1058 29-1076(1622)
3 PLN03232 ABC transporter C fam 100.0 4E-142 8E-147 1406.7 121.9 1016 23-1058 30-1073(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 8E-136 2E-140 1348.2 124.4 1031 18-1058 20-1128(1522)
5 TIGR01271 CFTR_protein cystic 100.0 1E-126 2E-131 1257.3 103.3 852 197-1058 3-1048(1490)
6 PTZ00243 ABC transporter; Prov 100.0 3E-117 7E-122 1167.2 102.2 860 196-1058 58-1121(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 5.1E-86 1.1E-90 807.3 72.4 775 267-1057 15-833 (1228)
8 KOG0058 Peptide exporter, ABC 100.0 1.5E-85 3.3E-90 764.1 63.6 548 269-822 139-707 (716)
9 PRK11174 cysteine/glutathione 100.0 1.5E-81 3.3E-86 770.8 72.3 547 268-820 13-585 (588)
10 COG2274 SunT ABC-type bacterio 100.0 9E-80 2E-84 746.3 71.6 547 267-819 144-708 (709)
11 KOG0055 Multidrug/pheromone ex 100.0 1.3E-77 2.8E-82 733.5 65.8 547 269-820 653-1226(1228)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-76 2.6E-81 738.6 73.1 544 267-818 126-684 (686)
13 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-76 5E-81 735.9 71.5 540 271-815 155-710 (711)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.9E-76 8.5E-81 737.3 72.0 542 269-816 146-709 (710)
15 PTZ00265 multidrug resistance 100.0 2.8E-74 6.1E-79 754.0 92.6 765 273-1045 56-978 (1466)
16 TIGR03375 type_I_sec_LssB type 100.0 2.1E-75 4.6E-80 728.4 72.8 536 268-808 138-689 (694)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-74 3.5E-79 722.0 72.0 541 271-817 150-707 (708)
18 PRK11176 lipid transporter ATP 100.0 2.8E-74 6.1E-79 706.0 72.3 545 270-819 18-579 (582)
19 COG1132 MdlB ABC-type multidru 100.0 4.4E-74 9.6E-79 701.1 71.0 537 275-820 13-565 (567)
20 PRK10790 putative multidrug tr 100.0 1.8E-73 3.9E-78 699.6 74.2 544 270-821 16-577 (592)
21 TIGR02203 MsbA_lipidA lipid A 100.0 2.9E-73 6.4E-78 696.0 72.3 545 270-819 7-568 (571)
22 PRK11160 cysteine/glutathione 100.0 6.5E-73 1.4E-77 690.0 72.3 542 271-817 10-572 (574)
23 COG4988 CydD ABC-type transpor 100.0 1.8E-72 3.9E-77 644.6 67.1 529 282-820 5-556 (559)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.3E-72 7.1E-77 687.2 71.9 548 269-818 10-574 (576)
25 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-71 2.6E-76 682.5 72.6 539 271-819 13-570 (588)
26 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-71 3.1E-76 693.5 73.5 545 269-818 131-691 (694)
27 TIGR02868 CydC thiol reductant 100.0 1.1E-71 2.4E-76 675.3 67.9 505 271-779 7-529 (529)
28 PTZ00265 multidrug resistance 100.0 1.1E-71 2.4E-76 729.6 72.2 543 273-819 821-1465(1466)
29 PRK10789 putative multidrug tr 100.0 2.7E-71 5.9E-76 675.6 70.2 530 287-820 5-551 (569)
30 TIGR01192 chvA glucan exporter 100.0 1.1E-69 2.4E-74 662.6 73.2 542 271-819 13-570 (585)
31 TIGR01842 type_I_sec_PrtD type 100.0 1.7E-69 3.8E-74 657.2 69.1 521 275-807 4-542 (544)
32 KOG0056 Heavy metal exporter H 100.0 5.7E-72 1.2E-76 612.8 39.2 528 284-820 222-775 (790)
33 TIGR00957 MRP_assoc_pro multi 100.0 3E-69 6.5E-74 714.4 73.3 472 343-818 1030-1519(1522)
34 TIGR02857 CydD thiol reductant 100.0 3.4E-69 7.3E-74 653.5 67.3 511 276-791 2-529 (529)
35 PLN03130 ABC transporter C fam 100.0 9.6E-69 2.1E-73 708.2 73.2 472 343-820 978-1475(1622)
36 COG4987 CydC ABC-type transpor 100.0 1.2E-68 2.6E-73 602.1 62.4 545 267-817 7-571 (573)
37 KOG0057 Mitochondrial Fe/S clu 100.0 2.7E-69 5.9E-74 607.4 57.1 528 285-819 38-586 (591)
38 PLN03232 ABC transporter C fam 100.0 8.1E-68 1.8E-72 699.8 71.7 471 343-819 975-1471(1495)
39 PTZ00243 ABC transporter; Prov 100.0 1.3E-66 2.7E-71 687.4 73.2 470 348-819 1028-1546(1560)
40 TIGR01271 CFTR_protein cystic 100.0 6.8E-64 1.5E-68 661.3 71.4 472 343-820 950-1453(1490)
41 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-62 2.4E-67 597.8 64.2 510 271-799 11-551 (555)
42 COG4618 ArpD ABC-type protease 100.0 4.9E-63 1.1E-67 551.2 54.7 527 267-808 13-561 (580)
43 COG5265 ATM1 ABC-type transpor 100.0 6.9E-64 1.5E-68 546.4 38.3 465 346-817 10-496 (497)
44 PRK10522 multidrug transporter 100.0 2.1E-60 4.6E-65 577.7 63.6 510 267-804 3-536 (547)
45 KOG0054 Multidrug resistance-a 100.0 3.7E-60 7.9E-65 594.2 61.2 470 342-818 882-1374(1381)
46 TIGR00954 3a01203 Peroxysomal 100.0 4E-55 8.6E-60 539.0 59.6 504 278-793 97-653 (659)
47 PRK14257 phosphate ABC transpo 100.0 5.4E-50 1.2E-54 453.1 23.6 263 528-808 23-314 (329)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.7E-47 1.4E-51 417.5 25.4 223 594-819 2-237 (275)
49 COG1126 GlnQ ABC-type polar am 100.0 2.5E-43 5.4E-48 357.3 19.2 201 594-809 2-227 (240)
50 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.9E-42 1.1E-46 380.1 28.6 219 590-813 35-253 (282)
51 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-42 6E-47 375.3 25.6 220 595-816 1-234 (237)
52 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-42 5.8E-47 366.6 23.0 201 595-795 1-204 (204)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 6E-42 1.3E-46 376.9 26.4 224 592-817 17-254 (257)
54 COG1116 TauB ABC-type nitrate/ 100.0 5E-42 1.1E-46 359.0 19.8 189 594-797 3-212 (248)
55 COG1135 AbcC ABC-type metal io 100.0 5.9E-42 1.3E-46 364.1 19.1 203 595-809 2-233 (339)
56 cd03254 ABCC_Glucan_exporter_l 100.0 3.4E-41 7.3E-46 364.8 24.3 212 594-808 2-227 (229)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 4.2E-41 9.2E-46 365.3 25.0 217 595-813 1-231 (234)
58 cd03253 ABCC_ATM1_transporter 100.0 5.6E-41 1.2E-45 364.8 25.5 218 595-815 1-232 (236)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.7E-41 1E-45 365.9 24.8 220 595-815 1-234 (238)
60 cd03244 ABCC_MRP_domain2 Domai 100.0 5.9E-41 1.3E-45 360.9 24.4 206 594-801 2-220 (221)
61 COG1125 OpuBA ABC-type proline 100.0 3.4E-41 7.3E-46 347.7 17.8 200 595-809 2-227 (309)
62 COG3840 ThiQ ABC-type thiamine 100.0 1.2E-40 2.6E-45 327.1 17.4 199 595-810 2-222 (231)
63 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.5E-40 5.3E-45 351.4 21.1 199 594-808 4-228 (254)
64 COG3839 MalK ABC-type sugar tr 100.0 2E-40 4.4E-45 367.0 21.1 201 594-809 3-225 (338)
65 cd03245 ABCC_bacteriocin_expor 100.0 6E-40 1.3E-44 352.9 24.0 205 594-800 2-220 (220)
66 COG1117 PstB ABC-type phosphat 100.0 8.2E-41 1.8E-45 337.0 15.6 205 593-808 6-238 (253)
67 PRK13631 cbiO cobalt transport 100.0 9.8E-40 2.1E-44 368.5 23.5 206 592-808 19-266 (320)
68 COG1136 SalX ABC-type antimicr 100.0 1.2E-39 2.6E-44 341.5 21.8 192 595-798 2-222 (226)
69 COG1120 FepC ABC-type cobalami 100.0 7.8E-40 1.7E-44 349.5 20.5 200 594-808 2-229 (258)
70 TIGR02314 ABC_MetN D-methionin 100.0 6.9E-40 1.5E-44 371.4 20.6 202 595-808 2-231 (343)
71 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-39 5.1E-44 333.3 21.8 210 592-816 6-245 (263)
72 TIGR01186 proV glycine betaine 100.0 6.7E-40 1.5E-44 373.4 19.2 188 610-809 6-221 (363)
73 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-39 3.6E-44 371.2 22.4 202 594-809 3-226 (356)
74 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-39 3.4E-44 353.1 21.0 200 595-809 1-228 (235)
75 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-39 7.2E-44 346.6 22.5 198 596-795 2-218 (218)
76 COG3842 PotA ABC-type spermidi 100.0 1.1E-39 2.3E-44 363.2 18.6 202 593-809 4-228 (352)
77 PRK13650 cbiO cobalt transport 100.0 3.3E-39 7.2E-44 358.9 21.5 203 594-808 4-230 (279)
78 COG4178 ABC-type uncharacteriz 100.0 5.6E-36 1.2E-40 350.2 49.4 436 340-792 108-587 (604)
79 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-39 3.9E-44 344.1 18.2 201 594-809 2-229 (345)
80 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-39 8E-44 344.7 20.7 201 594-808 3-229 (235)
81 cd03260 ABC_PstB_phosphate_tra 100.0 2.8E-39 6E-44 349.4 19.6 198 595-805 1-227 (227)
82 PRK11432 fbpC ferric transport 100.0 5.1E-39 1.1E-43 366.2 22.3 202 593-809 5-228 (351)
83 cd03248 ABCC_TAP TAP, the Tran 100.0 7.8E-39 1.7E-43 345.6 22.6 204 592-796 9-226 (226)
84 PRK13637 cbiO cobalt transport 100.0 5.7E-39 1.2E-43 358.3 21.6 205 594-808 2-235 (287)
85 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-38 2.8E-43 339.2 23.4 189 593-801 5-206 (207)
86 PRK14269 phosphate ABC transpo 100.0 7.4E-39 1.6E-43 350.2 21.6 204 594-808 2-231 (246)
87 PRK13634 cbiO cobalt transport 100.0 8.7E-39 1.9E-43 357.4 21.9 203 595-808 3-236 (290)
88 PRK09452 potA putrescine/sperm 100.0 1.1E-38 2.3E-43 365.9 22.4 202 593-809 13-236 (375)
89 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-38 2.9E-43 346.8 21.9 199 595-808 3-227 (239)
90 PRK13643 cbiO cobalt transport 100.0 1.4E-38 3E-43 355.4 22.2 203 595-808 2-234 (288)
91 TIGR00972 3a0107s01c2 phosphat 100.0 1.4E-38 3E-43 348.3 21.6 203 595-808 2-233 (247)
92 COG1124 DppF ABC-type dipeptid 100.0 1.6E-38 3.4E-43 329.3 20.5 209 594-814 3-239 (252)
93 PRK14242 phosphate transporter 100.0 1.5E-38 3.1E-43 349.5 21.5 205 593-808 5-238 (253)
94 PRK13635 cbiO cobalt transport 100.0 2.5E-38 5.4E-43 351.8 22.7 203 594-809 5-231 (279)
95 PRK14273 phosphate ABC transpo 100.0 2.6E-38 5.6E-43 347.7 22.5 205 593-808 6-239 (254)
96 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-38 3.4E-43 362.8 21.1 201 594-809 4-226 (353)
97 PRK13646 cbiO cobalt transport 100.0 2.1E-38 4.5E-43 353.8 21.5 203 595-808 3-236 (286)
98 PRK10851 sulfate/thiosulfate t 100.0 2.4E-38 5.3E-43 361.3 22.3 200 595-809 3-228 (353)
99 cd03263 ABC_subfamily_A The AB 100.0 2.4E-38 5.2E-43 340.4 20.8 198 595-805 1-219 (220)
100 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-38 3.4E-43 340.1 19.3 191 595-800 1-213 (213)
101 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-38 5E-43 344.3 20.7 198 595-807 1-232 (236)
102 COG4615 PvdE ABC-type sideroph 100.0 1.9E-35 4.2E-40 319.8 42.9 502 268-799 4-529 (546)
103 PRK10744 pstB phosphate transp 100.0 4.1E-38 8.8E-43 347.2 22.9 206 592-808 11-245 (260)
104 TIGR03258 PhnT 2-aminoethylpho 100.0 2E-38 4.4E-43 362.3 21.1 202 593-809 4-230 (362)
105 PRK13647 cbiO cobalt transport 100.0 2.8E-38 6E-43 350.6 21.5 198 594-805 4-225 (274)
106 PRK11000 maltose/maltodextrin 100.0 2.4E-38 5.2E-43 364.1 21.5 200 594-808 3-224 (369)
107 PRK14250 phosphate ABC transpo 100.0 4.9E-38 1.1E-42 342.5 22.8 201 594-808 3-222 (241)
108 TIGR02315 ABC_phnC phosphonate 100.0 3.3E-38 7.1E-43 344.6 21.4 198 595-806 2-234 (243)
109 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-38 4.9E-43 340.6 19.6 196 595-802 1-218 (220)
110 cd03226 ABC_cobalt_CbiO_domain 100.0 3.2E-38 6.9E-43 335.7 20.1 187 597-797 2-205 (205)
111 PRK11153 metN DL-methionine tr 100.0 3.1E-38 6.7E-43 360.2 21.4 202 595-808 2-231 (343)
112 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-38 5E-43 339.6 18.9 189 595-796 2-216 (216)
113 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.7E-38 5.8E-43 339.6 19.0 190 595-796 1-218 (218)
114 cd03256 ABC_PhnC_transporter A 100.0 3.9E-38 8.5E-43 343.5 20.6 198 595-806 1-233 (241)
115 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.5E-38 5.4E-43 350.2 19.2 198 596-808 26-251 (269)
116 PRK13651 cobalt transporter AT 100.0 7.9E-38 1.7E-42 351.0 22.6 203 595-808 3-255 (305)
117 cd03258 ABC_MetN_methionine_tr 100.0 6E-38 1.3E-42 340.3 21.0 201 595-807 2-230 (233)
118 PRK14235 phosphate transporter 100.0 8.5E-38 1.8E-42 345.7 22.5 206 592-808 17-252 (267)
119 PRK13636 cbiO cobalt transport 100.0 6.8E-38 1.5E-42 349.1 21.5 201 594-808 5-232 (283)
120 PRK14237 phosphate transporter 100.0 9.3E-38 2E-42 345.4 22.5 206 592-808 18-252 (267)
121 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9E-38 1.9E-42 339.6 21.9 199 595-808 2-222 (236)
122 cd03265 ABC_DrrA DrrA is the A 100.0 5.1E-38 1.1E-42 337.8 19.6 196 595-805 1-219 (220)
123 PRK14274 phosphate ABC transpo 100.0 9.7E-38 2.1E-42 344.0 22.2 204 594-808 12-244 (259)
124 PRK14239 phosphate transporter 100.0 8E-38 1.7E-42 343.4 21.2 204 594-808 5-237 (252)
125 PRK13642 cbiO cobalt transport 100.0 1E-37 2.2E-42 346.8 22.2 204 594-809 4-231 (277)
126 PRK13640 cbiO cobalt transport 100.0 8.5E-38 1.8E-42 348.2 21.6 203 593-808 4-233 (282)
127 PRK14245 phosphate ABC transpo 100.0 6.8E-38 1.5E-42 343.5 20.4 204 594-808 3-235 (250)
128 PRK11629 lolD lipoprotein tran 100.0 8.3E-38 1.8E-42 339.2 20.8 196 594-801 5-228 (233)
129 cd03247 ABCC_cytochrome_bd The 100.0 9.6E-38 2.1E-42 324.4 20.3 166 595-800 1-178 (178)
130 PRK14251 phosphate ABC transpo 100.0 7.3E-38 1.6E-42 343.5 20.4 204 594-808 4-236 (251)
131 PRK13633 cobalt transporter AT 100.0 1.6E-37 3.4E-42 345.8 22.9 203 594-808 4-234 (280)
132 cd03224 ABC_TM1139_LivF_branch 100.0 1E-37 2.3E-42 335.9 20.6 198 595-806 1-220 (222)
133 PRK14268 phosphate ABC transpo 100.0 1E-37 2.2E-42 343.6 20.7 205 593-808 11-243 (258)
134 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-37 2.8E-42 331.8 20.9 191 595-800 1-208 (208)
135 PRK13644 cbiO cobalt transport 100.0 1.7E-37 3.6E-42 344.4 22.4 200 595-808 2-225 (274)
136 PRK14248 phosphate ABC transpo 100.0 1.7E-37 3.7E-42 343.8 22.4 205 593-808 20-253 (268)
137 PRK13632 cbiO cobalt transport 100.0 2.1E-37 4.6E-42 343.3 23.1 202 594-808 7-232 (271)
138 PRK14240 phosphate transporter 100.0 1.8E-37 3.8E-42 340.3 22.3 204 594-808 3-235 (250)
139 cd03301 ABC_MalK_N The N-termi 100.0 8.1E-38 1.8E-42 334.6 19.1 191 595-800 1-213 (213)
140 PRK13648 cbiO cobalt transport 100.0 1.8E-37 3.9E-42 343.6 22.5 202 594-808 7-232 (269)
141 cd03264 ABC_drug_resistance_li 100.0 8.5E-38 1.8E-42 333.9 19.1 190 595-800 1-211 (211)
142 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.9E-38 1.7E-42 341.3 19.2 202 595-808 1-226 (242)
143 PRK14236 phosphate transporter 100.0 1.4E-37 3E-42 345.0 21.4 206 592-808 23-257 (272)
144 PRK11607 potG putrescine trans 100.0 1.4E-37 3E-42 357.3 22.1 202 593-809 18-241 (377)
145 PRK14249 phosphate ABC transpo 100.0 2.1E-37 4.5E-42 339.9 22.3 204 594-808 4-236 (251)
146 COG3638 ABC-type phosphate/pho 100.0 6.8E-38 1.5E-42 321.7 17.2 200 594-807 3-237 (258)
147 PRK13645 cbiO cobalt transport 100.0 1.4E-37 3E-42 347.9 21.3 205 593-808 5-241 (289)
148 PRK14270 phosphate ABC transpo 100.0 1.8E-37 3.9E-42 340.4 21.7 204 594-808 4-236 (251)
149 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-37 3E-42 334.8 19.8 191 595-797 2-220 (221)
150 cd03235 ABC_Metallic_Cations A 100.0 1.3E-37 2.9E-42 333.0 19.6 188 597-800 2-213 (213)
151 cd03266 ABC_NatA_sodium_export 100.0 1.6E-37 3.5E-42 333.5 20.2 194 595-800 2-218 (218)
152 TIGR03411 urea_trans_UrtD urea 100.0 2.1E-37 4.5E-42 338.1 21.3 198 595-807 3-231 (242)
153 PRK11247 ssuB aliphatic sulfon 100.0 2.6E-37 5.7E-42 338.9 22.2 196 593-803 11-219 (257)
154 PRK10619 histidine/lysine/argi 100.0 1.9E-37 4E-42 341.4 21.0 203 592-808 3-242 (257)
155 PRK14244 phosphate ABC transpo 100.0 1.4E-37 3E-42 341.3 19.9 203 595-808 6-238 (251)
156 cd03298 ABC_ThiQ_thiamine_tran 100.0 2E-37 4.4E-42 331.0 20.6 189 595-800 1-211 (211)
157 PRK14238 phosphate transporter 100.0 2.4E-37 5.2E-42 342.7 21.8 205 593-808 23-256 (271)
158 PRK14259 phosphate ABC transpo 100.0 3.6E-37 7.8E-42 340.9 22.9 205 593-808 12-254 (269)
159 cd03218 ABC_YhbG The ABC trans 100.0 2.3E-37 5.1E-42 335.5 20.8 198 595-807 1-222 (232)
160 PRK13649 cbiO cobalt transport 100.0 2.8E-37 6.2E-42 344.1 22.0 203 595-808 3-235 (280)
161 PRK11124 artP arginine transpo 100.0 2.9E-37 6.4E-42 336.8 21.5 198 595-807 3-230 (242)
162 PRK14267 phosphate ABC transpo 100.0 2.4E-37 5.2E-42 339.8 20.8 204 594-808 4-238 (253)
163 PRK14243 phosphate transporter 100.0 3.6E-37 7.9E-42 340.1 22.2 204 594-808 10-249 (264)
164 PRK09493 glnQ glutamine ABC tr 100.0 3.4E-37 7.3E-42 336.0 21.7 199 595-808 2-226 (240)
165 PRK14247 phosphate ABC transpo 100.0 3.3E-37 7.1E-42 338.2 21.7 204 594-808 3-235 (250)
166 PRK10247 putative ABC transpor 100.0 2.1E-37 4.5E-42 334.1 19.8 197 593-803 6-223 (225)
167 TIGR02769 nickel_nikE nickel i 100.0 4E-37 8.8E-42 340.1 22.4 208 595-813 3-246 (265)
168 PRK14253 phosphate ABC transpo 100.0 3.4E-37 7.4E-42 337.8 21.6 203 594-807 3-233 (249)
169 PRK13641 cbiO cobalt transport 100.0 3.9E-37 8.4E-42 343.7 22.3 204 594-808 2-235 (287)
170 PRK10575 iron-hydroxamate tran 100.0 3.3E-37 7.1E-42 340.8 21.4 200 593-807 10-237 (265)
171 PRK13652 cbiO cobalt transport 100.0 4.6E-37 9.9E-42 341.6 22.5 201 594-808 3-228 (277)
172 PRK14261 phosphate ABC transpo 100.0 4E-37 8.6E-42 338.1 21.4 204 594-808 6-238 (253)
173 PRK11264 putative amino-acid A 100.0 5.5E-37 1.2E-41 336.4 22.4 200 594-808 3-234 (250)
174 COG2884 FtsE Predicted ATPase 100.0 2.3E-37 5E-42 306.8 17.4 192 595-800 2-219 (223)
175 PRK14271 phosphate ABC transpo 100.0 4.5E-37 9.8E-42 341.1 21.9 204 594-808 21-252 (276)
176 PRK10771 thiQ thiamine transpo 100.0 9.8E-37 2.1E-41 330.6 24.1 197 595-808 2-220 (232)
177 PRK14262 phosphate ABC transpo 100.0 3.2E-37 7E-42 338.2 20.5 204 594-808 3-235 (250)
178 PRK11831 putative ABC transpor 100.0 3.3E-37 7.3E-42 341.3 20.8 201 593-808 6-234 (269)
179 TIGR03005 ectoine_ehuA ectoine 100.0 3.3E-37 7.3E-42 338.4 20.4 199 595-808 1-237 (252)
180 cd03292 ABC_FtsE_transporter F 100.0 2.8E-37 6.1E-42 330.7 19.3 188 595-796 1-214 (214)
181 cd03223 ABCD_peroxisomal_ALDP 100.0 4.1E-37 8.8E-42 315.7 19.7 162 595-795 1-164 (166)
182 TIGR03410 urea_trans_UrtE urea 100.0 2.9E-37 6.3E-42 334.3 19.6 197 595-805 1-219 (230)
183 PRK13639 cbiO cobalt transport 100.0 3.7E-37 8E-42 342.0 20.9 200 595-808 2-227 (275)
184 PRK10070 glycine betaine trans 100.0 2.9E-37 6.3E-42 355.7 20.7 187 611-809 42-256 (400)
185 PRK14252 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 338.8 22.4 204 593-807 15-249 (265)
186 PRK10584 putative ABC transpor 100.0 4.4E-37 9.5E-42 332.5 20.9 194 594-799 6-227 (228)
187 TIGR03415 ABC_choXWV_ATP choli 100.0 3.2E-37 6.9E-42 352.8 20.8 187 610-808 37-255 (382)
188 PRK13537 nodulation ABC transp 100.0 5E-37 1.1E-41 345.2 21.8 201 593-808 6-228 (306)
189 PRK15079 oligopeptide ABC tran 100.0 4.8E-37 1E-41 348.0 21.8 211 593-814 7-259 (331)
190 cd03269 ABC_putative_ATPase Th 100.0 3.9E-37 8.4E-42 328.6 19.5 191 595-800 1-210 (210)
191 PRK11300 livG leucine/isoleuci 100.0 5.2E-37 1.1E-41 337.6 21.0 199 594-807 5-243 (255)
192 PRK14254 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 341.6 21.7 206 592-808 37-270 (285)
193 TIGR00968 3a0106s01 sulfate AB 100.0 5.9E-37 1.3E-41 333.2 21.1 199 595-808 1-221 (237)
194 PRK14264 phosphate ABC transpo 100.0 6.8E-37 1.5E-41 344.4 22.2 205 593-808 44-290 (305)
195 PRK14256 phosphate ABC transpo 100.0 8E-37 1.7E-41 335.4 21.8 205 593-808 3-237 (252)
196 TIGR02673 FtsE cell division A 100.0 4E-37 8.7E-42 329.5 18.6 187 595-795 2-214 (214)
197 TIGR01288 nodI ATP-binding ABC 100.0 9.4E-37 2E-41 343.3 22.4 200 594-808 4-225 (303)
198 cd03300 ABC_PotA_N PotA is an 100.0 4.9E-37 1.1E-41 332.8 19.4 199 595-808 1-221 (232)
199 PRK11231 fecE iron-dicitrate t 100.0 9.3E-37 2E-41 335.4 21.8 198 595-807 3-227 (255)
200 PRK09536 btuD corrinoid ABC tr 100.0 7.7E-37 1.7E-41 352.4 22.0 200 594-808 3-229 (402)
201 PRK14266 phosphate ABC transpo 100.0 6.8E-37 1.5E-41 335.6 20.6 204 594-808 3-235 (250)
202 PRK09984 phosphonate/organopho 100.0 1.2E-36 2.6E-41 335.9 22.3 197 594-805 4-240 (262)
203 PRK13638 cbiO cobalt transport 100.0 1.1E-36 2.4E-41 337.7 22.0 199 595-808 2-226 (271)
204 PRK10253 iron-enterobactin tra 100.0 9.9E-37 2.1E-41 337.0 21.6 201 592-807 5-233 (265)
205 cd03225 ABC_cobalt_CbiO_domain 100.0 5.4E-37 1.2E-41 327.7 18.8 186 597-795 2-211 (211)
206 PRK14263 phosphate ABC transpo 100.0 1.4E-36 2.9E-41 334.7 22.0 205 593-808 7-246 (261)
207 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-36 2.3E-41 325.9 20.5 189 596-801 2-212 (213)
208 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-36 3E-41 328.5 21.6 195 595-800 2-228 (228)
209 PRK13548 hmuV hemin importer A 100.0 2.2E-36 4.7E-41 332.8 23.0 198 595-807 3-230 (258)
210 PRK10418 nikD nickel transport 100.0 2.7E-36 5.9E-41 331.5 23.4 203 594-809 4-232 (254)
211 PRK10895 lipopolysaccharide AB 100.0 1.9E-36 4.1E-41 330.3 22.0 199 594-807 3-226 (241)
212 cd03299 ABC_ModC_like Archeal 100.0 1.2E-36 2.6E-41 330.4 20.3 198 595-808 1-220 (235)
213 PRK14275 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 339.3 20.9 206 592-808 37-271 (286)
214 PRK11614 livF leucine/isoleuci 100.0 2E-36 4.4E-41 329.2 21.9 200 594-807 5-226 (237)
215 TIGR01978 sufC FeS assembly AT 100.0 1.4E-36 3.1E-41 331.7 20.7 197 595-805 1-232 (243)
216 PRK11144 modC molybdate transp 100.0 1.7E-36 3.7E-41 347.2 22.2 197 595-809 2-220 (352)
217 TIGR03873 F420-0_ABC_ATP propo 100.0 1.7E-36 3.8E-41 333.5 21.3 198 595-807 2-226 (256)
218 PRK14260 phosphate ABC transpo 100.0 1.9E-36 4.1E-41 333.7 21.4 205 593-808 6-244 (259)
219 cd03246 ABCC_Protease_Secretio 100.0 1.3E-36 2.9E-41 314.3 18.9 159 595-796 1-173 (173)
220 PRK14272 phosphate ABC transpo 100.0 2.3E-36 4.9E-41 331.9 21.3 204 594-808 4-237 (252)
221 PRK15112 antimicrobial peptide 100.0 2.9E-36 6.2E-41 333.5 22.2 213 594-817 4-251 (267)
222 TIGR03522 GldA_ABC_ATP gliding 100.0 3.5E-36 7.6E-41 338.2 23.0 199 595-808 3-222 (301)
223 PRK11308 dppF dipeptide transp 100.0 2.8E-36 6.1E-41 341.4 22.4 210 594-814 5-252 (327)
224 PRK13536 nodulation factor exp 100.0 2.1E-36 4.7E-41 343.5 21.5 201 593-808 40-262 (340)
225 PRK09544 znuC high-affinity zi 100.0 4.5E-36 9.8E-41 328.3 23.0 206 594-816 4-217 (251)
226 PRK14255 phosphate ABC transpo 100.0 2.8E-36 6E-41 331.2 21.2 204 594-808 5-237 (252)
227 PRK10908 cell division protein 100.0 2.5E-36 5.4E-41 325.2 20.3 190 595-798 2-217 (222)
228 PRK14241 phosphate transporter 100.0 2.8E-36 6.1E-41 332.2 21.2 204 594-808 4-243 (258)
229 PRK11248 tauB taurine transpor 100.0 2.7E-36 5.8E-41 331.3 20.6 193 595-802 2-215 (255)
230 TIGR03740 galliderm_ABC gallid 100.0 2.7E-36 5.9E-41 325.1 20.2 195 595-804 1-210 (223)
231 PRK14265 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 332.5 22.8 205 593-808 19-259 (274)
232 cd03262 ABC_HisP_GlnQ_permease 100.0 1.8E-36 4E-41 324.1 18.6 187 595-796 1-213 (213)
233 PRK11701 phnK phosphonate C-P 100.0 3.2E-36 6.9E-41 331.8 20.6 201 594-808 6-242 (258)
234 PRK11022 dppD dipeptide transp 100.0 3.5E-36 7.5E-41 340.8 21.1 210 595-813 4-250 (326)
235 TIGR01188 drrA daunorubicin re 100.0 2.7E-36 5.8E-41 339.5 19.8 187 610-808 6-214 (302)
236 TIGR02982 heterocyst_DevA ABC 100.0 3.4E-36 7.4E-41 323.6 18.9 190 595-796 2-219 (220)
237 PRK09473 oppD oligopeptide tra 100.0 7.8E-36 1.7E-40 338.2 22.4 213 593-814 11-259 (330)
238 PRK14246 phosphate ABC transpo 100.0 8.8E-36 1.9E-40 327.5 21.9 205 593-808 9-242 (257)
239 PRK10419 nikE nickel transport 100.0 6.9E-36 1.5E-40 330.6 21.2 210 594-814 3-248 (268)
240 cd03234 ABCG_White The White s 100.0 6.9E-36 1.5E-40 322.6 20.2 198 595-800 4-226 (226)
241 PRK13546 teichoic acids export 100.0 1.7E-35 3.6E-40 325.7 23.6 210 594-815 4-240 (264)
242 PRK13547 hmuV hemin importer A 100.0 8.3E-36 1.8E-40 329.8 21.2 198 595-807 2-244 (272)
243 PRK15093 antimicrobial peptide 100.0 9.8E-36 2.1E-40 338.2 22.1 212 594-814 3-256 (330)
244 PRK14258 phosphate ABC transpo 100.0 9.9E-36 2.1E-40 328.3 21.3 204 594-808 7-246 (261)
245 PRK15056 manganese/iron transp 100.0 1.8E-35 3.8E-40 328.2 22.1 199 594-807 6-230 (272)
246 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-35 2.5E-40 315.1 19.5 179 594-800 3-202 (202)
247 TIGR02142 modC_ABC molybdenum 100.0 1.3E-35 2.7E-40 340.5 21.1 194 599-809 4-223 (354)
248 COG1131 CcmA ABC-type multidru 100.0 2.2E-35 4.9E-40 328.8 22.3 201 594-808 4-227 (293)
249 TIGR00955 3a01204 The Eye Pigm 100.0 9E-36 2E-40 365.5 20.6 191 609-807 37-256 (617)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 1.7E-35 3.7E-40 316.8 19.1 184 599-800 5-214 (214)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 2.3E-35 4.9E-40 305.1 18.9 158 595-796 1-173 (173)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-35 5E-40 310.7 19.2 173 594-800 3-194 (194)
253 TIGR02770 nickel_nikD nickel i 100.0 2.2E-35 4.9E-40 319.4 19.1 188 612-808 1-216 (230)
254 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-35 4.7E-40 310.4 18.3 173 594-800 3-192 (192)
255 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-35 7.1E-40 303.3 18.9 158 595-795 1-171 (171)
256 COG0410 LivF ABC-type branched 100.0 3.6E-35 7.8E-40 302.4 18.1 207 594-809 3-228 (237)
257 TIGR02323 CP_lyasePhnK phospho 100.0 6.5E-35 1.4E-39 320.5 20.9 201 594-808 3-239 (253)
258 PRK13545 tagH teichoic acids e 100.0 1.6E-34 3.5E-39 335.3 24.2 210 593-814 20-239 (549)
259 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-34 3.3E-39 317.4 22.7 197 594-804 7-238 (252)
260 cd03215 ABC_Carb_Monos_II This 100.0 4.8E-35 1E-39 305.3 17.4 159 594-796 4-182 (182)
261 cd03229 ABC_Class3 This class 100.0 8.3E-35 1.8E-39 302.3 18.5 159 595-795 1-178 (178)
262 TIGR01184 ntrCD nitrate transp 100.0 6.8E-35 1.5E-39 315.5 18.5 181 613-805 1-202 (230)
263 PRK15439 autoinducer 2 ABC tra 100.0 1.5E-34 3.4E-39 348.1 22.8 199 594-807 11-229 (510)
264 TIGR03608 L_ocin_972_ABC putat 100.0 7.6E-35 1.7E-39 310.0 17.4 180 597-791 1-206 (206)
265 COG4175 ProV ABC-type proline/ 100.0 1.1E-34 2.5E-39 307.4 17.4 187 612-809 43-256 (386)
266 PRK03695 vitamin B12-transport 100.0 4E-34 8.6E-39 313.0 21.3 192 596-807 2-222 (248)
267 PRK10261 glutathione transport 100.0 1.6E-34 3.4E-39 354.9 20.0 207 593-808 11-259 (623)
268 PRK09580 sufC cysteine desulfu 100.0 4.4E-34 9.6E-39 313.0 21.1 198 595-805 2-233 (248)
269 KOG0060 Long-chain acyl-CoA tr 100.0 1.8E-31 3.9E-36 302.5 42.6 451 334-793 138-641 (659)
270 cd03217 ABC_FeS_Assembly ABC-t 100.0 4E-34 8.6E-39 302.8 19.6 172 595-806 1-192 (200)
271 PRK13549 xylose transporter AT 100.0 2.7E-34 5.8E-39 346.1 20.7 198 594-806 5-231 (506)
272 cd03267 ABC_NatA_like Similar 100.0 2.6E-34 5.5E-39 312.3 18.4 179 610-800 34-236 (236)
273 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.8E-34 6.1E-39 309.4 18.4 191 595-800 23-224 (224)
274 PRK10261 glutathione transport 100.0 3.2E-34 6.9E-39 352.2 21.2 213 593-817 312-565 (623)
275 PLN03211 ABC transporter G-25; 100.0 9.7E-34 2.1E-38 347.4 24.8 190 610-807 81-296 (659)
276 PRK09700 D-allose transporter 100.0 3.3E-34 7.1E-39 345.8 20.2 199 594-807 5-234 (510)
277 COG4619 ABC-type uncharacteriz 100.0 1.4E-34 3E-39 280.5 13.5 179 609-798 15-214 (223)
278 PRK10762 D-ribose transporter 100.0 4E-34 8.7E-39 344.2 20.5 198 594-806 4-229 (501)
279 PRK13540 cytochrome c biogenes 100.0 7.6E-34 1.7E-38 300.8 19.7 181 595-790 2-198 (200)
280 PRK13538 cytochrome c biogenes 100.0 8.9E-34 1.9E-38 301.2 19.7 182 595-791 2-202 (204)
281 cd03214 ABC_Iron-Siderophores_ 100.0 4.4E-34 9.5E-39 297.5 16.2 176 596-800 1-180 (180)
282 PRK13543 cytochrome c biogenes 100.0 1.8E-33 3.9E-38 301.1 20.9 186 593-793 10-212 (214)
283 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-33 4E-38 298.1 20.7 182 595-791 1-198 (201)
284 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-33 2.3E-38 308.3 19.4 192 602-807 1-207 (246)
285 PRK10982 galactose/methyl gala 100.0 8.7E-34 1.9E-38 340.6 20.3 194 598-806 2-222 (491)
286 PRK11288 araG L-arabinose tran 100.0 1.2E-33 2.6E-38 340.0 21.3 193 594-801 4-223 (501)
287 PRK13541 cytochrome c biogenes 100.0 1.5E-33 3.2E-38 297.4 19.1 179 595-789 2-193 (195)
288 PRK13539 cytochrome c biogenes 100.0 2.5E-33 5.4E-38 298.4 20.8 183 595-793 3-200 (207)
289 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-33 2.4E-38 304.6 18.2 178 618-808 1-202 (223)
290 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-33 2.5E-38 341.9 20.5 198 595-807 1-258 (520)
291 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-33 3E-38 341.2 21.0 207 594-807 279-517 (520)
292 cd03216 ABC_Carb_Monos_I This 100.0 1.7E-33 3.6E-38 288.1 18.2 159 595-798 1-162 (163)
293 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-33 3.3E-38 339.5 20.9 197 595-805 2-228 (500)
294 PRK10938 putative molybdenum t 100.0 1.9E-33 4.1E-38 337.8 21.6 198 595-808 4-225 (490)
295 PRK15134 microcin C ABC transp 100.0 1.8E-33 3.9E-38 340.7 21.3 206 594-808 5-247 (529)
296 COG4525 TauB ABC-type taurine 100.0 9.5E-34 2.1E-38 281.2 15.3 194 595-801 4-218 (259)
297 PRK15134 microcin C ABC transp 100.0 1.3E-33 2.9E-38 341.8 19.8 202 594-808 275-516 (529)
298 COG1123 ATPase components of v 100.0 3.4E-33 7.4E-38 323.1 22.1 212 593-816 279-529 (539)
299 PRK11819 putative ABC transpor 100.0 2.4E-33 5.3E-38 340.9 22.0 198 594-808 6-251 (556)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-33 2.8E-38 343.3 19.2 207 594-808 4-249 (552)
301 TIGR02324 CP_lyasePhnL phospho 100.0 2.6E-33 5.6E-38 302.2 18.7 186 595-791 2-222 (224)
302 PRK15064 ABC transporter ATP-b 100.0 4.1E-33 8.9E-38 337.7 22.3 198 595-808 2-243 (530)
303 PRK13549 xylose transporter AT 100.0 1.9E-33 4E-38 338.8 18.7 202 594-806 259-493 (506)
304 PRK15064 ABC transporter ATP-b 100.0 8.1E-33 1.8E-37 335.1 23.6 201 593-809 318-527 (530)
305 TIGR01189 ccmA heme ABC export 100.0 4.7E-33 1E-37 294.3 18.7 179 595-789 1-196 (198)
306 PRK15177 Vi polysaccharide exp 100.0 3.4E-33 7.3E-38 298.4 17.7 186 612-808 2-193 (213)
307 COG1123 ATPase components of v 100.0 7.1E-33 1.5E-37 320.4 21.4 211 594-814 5-252 (539)
308 COG0444 DppD ABC-type dipeptid 100.0 6.2E-33 1.3E-37 300.3 18.3 212 595-818 2-256 (316)
309 COG4181 Predicted ABC-type tra 100.0 7.5E-33 1.6E-37 269.4 16.3 194 594-798 6-226 (228)
310 TIGR01166 cbiO cobalt transpor 100.0 5.7E-33 1.2E-37 291.8 16.6 160 610-781 5-189 (190)
311 COG4555 NatA ABC-type Na+ tran 100.0 7.5E-33 1.6E-37 276.8 15.4 200 595-808 2-223 (245)
312 TIGR01257 rim_protein retinal- 100.0 1.7E-32 3.8E-37 359.5 22.9 203 593-808 927-1150(2272)
313 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-32 3.5E-37 274.7 17.3 141 595-795 1-144 (144)
314 COG4598 HisP ABC-type histidin 100.0 6.5E-33 1.4E-37 271.3 14.0 201 593-808 5-242 (256)
315 TIGR01187 potA spermidine/putr 100.0 9.7E-33 2.1E-37 313.0 16.9 170 628-809 1-192 (325)
316 COG4148 ModC ABC-type molybdat 100.0 8.9E-33 1.9E-37 288.3 14.7 183 615-809 16-220 (352)
317 PRK09700 D-allose transporter 100.0 2.6E-32 5.7E-37 329.3 20.1 193 594-802 265-493 (510)
318 TIGR00956 3a01205 Pleiotropic 100.0 2.3E-32 4.9E-37 359.4 21.0 203 594-804 759-990 (1394)
319 COG1137 YhbG ABC-type (unclass 100.0 2.9E-33 6.3E-38 279.5 9.3 206 594-808 4-229 (243)
320 PRK10535 macrolide transporter 100.0 4.4E-32 9.6E-37 334.4 21.5 201 594-806 4-231 (648)
321 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-32 5.5E-37 328.8 18.4 199 594-803 257-488 (500)
322 COG4608 AppF ABC-type oligopep 100.0 4.8E-32 1E-36 287.6 17.3 192 594-814 4-207 (268)
323 PRK10762 D-ribose transporter 100.0 4.1E-32 8.9E-37 326.8 18.5 193 594-805 257-482 (501)
324 PRK11288 araG L-arabinose tran 100.0 7.2E-32 1.6E-36 324.7 20.0 195 594-806 257-484 (501)
325 TIGR01257 rim_protein retinal- 100.0 1.3E-31 2.7E-36 351.4 22.6 205 592-809 1935-2161(2272)
326 COG4559 ABC-type hemin transpo 100.0 1.2E-31 2.5E-36 270.3 16.7 199 595-808 2-231 (259)
327 PRK11819 putative ABC transpor 100.0 2.8E-31 6E-36 322.9 23.1 200 593-808 323-534 (556)
328 COG4161 ArtP ABC-type arginine 100.0 7.6E-32 1.7E-36 259.3 14.3 198 594-806 2-229 (242)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.1E-31 6.6E-36 322.5 23.0 200 593-808 321-532 (552)
330 PLN03073 ABC transporter F fam 100.0 3.7E-31 7.9E-36 326.3 23.2 198 593-806 507-713 (718)
331 COG0411 LivG ABC-type branched 100.0 1.2E-31 2.6E-36 278.4 14.3 199 595-808 5-240 (250)
332 PRK10636 putative ABC transpor 100.0 5.7E-31 1.2E-35 323.7 22.9 198 592-806 310-516 (638)
333 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-31 5E-36 320.6 18.3 194 594-806 268-491 (510)
334 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-31 4.9E-36 291.3 16.4 187 598-800 4-220 (255)
335 cd03222 ABC_RNaseL_inhibitor T 100.0 3E-31 6.6E-36 273.3 15.7 145 598-798 4-152 (177)
336 COG1129 MglA ABC-type sugar tr 100.0 7.1E-31 1.5E-35 302.1 20.3 194 593-801 7-228 (500)
337 PRK13409 putative ATPase RIL; 100.0 5.3E-31 1.1E-35 319.5 19.7 193 593-802 339-537 (590)
338 PRK10938 putative molybdenum t 100.0 3.8E-31 8.2E-36 317.9 17.9 193 593-799 259-484 (490)
339 cd03238 ABC_UvrA The excision 100.0 6.2E-31 1.4E-35 270.7 17.0 149 609-796 7-166 (176)
340 COG4172 ABC-type uncharacteriz 100.0 1.5E-30 3.3E-35 283.2 20.5 208 593-813 275-523 (534)
341 PRK11147 ABC transporter ATPas 100.0 1.8E-30 3.9E-35 320.1 23.4 199 593-807 318-528 (635)
342 PRK10636 putative ABC transpor 100.0 3E-30 6.5E-35 317.4 23.2 198 595-808 2-237 (638)
343 COG4604 CeuD ABC-type enteroch 100.0 2.2E-31 4.7E-36 265.1 9.9 199 595-808 2-226 (252)
344 PRK10982 galactose/methyl gala 100.0 2E-30 4.4E-35 311.5 18.9 196 593-804 249-477 (491)
345 PLN03140 ABC transporter G fam 100.0 5.4E-30 1.2E-34 335.5 23.5 203 594-804 867-1107(1470)
346 PRK11147 ABC transporter ATPas 100.0 6.5E-30 1.4E-34 315.1 21.9 196 594-808 3-244 (635)
347 COG3845 ABC-type uncharacteriz 100.0 1.6E-29 3.4E-34 284.5 18.3 191 593-798 3-220 (501)
348 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.3E-29 7.2E-34 254.9 16.8 141 597-795 2-157 (157)
349 COG1134 TagH ABC-type polysacc 100.0 7E-29 1.5E-33 258.3 18.5 188 609-808 39-237 (249)
350 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-29 5.4E-34 330.7 18.9 189 610-806 74-299 (1394)
351 COG4136 ABC-type uncharacteriz 100.0 6.5E-29 1.4E-33 236.7 15.6 183 595-791 3-207 (213)
352 PLN03140 ABC transporter G fam 100.0 2.7E-29 5.8E-34 329.1 16.4 197 610-807 178-427 (1470)
353 COG0488 Uup ATPase components 100.0 1E-28 2.2E-33 292.0 19.6 206 594-809 3-242 (530)
354 COG1101 PhnK ABC-type uncharac 100.0 4.3E-29 9.4E-34 252.3 12.5 186 609-799 18-230 (263)
355 COG4167 SapF ABC-type antimicr 100.0 1.4E-28 3.1E-33 241.5 14.9 189 610-809 26-241 (267)
356 PRK13409 putative ATPase RIL; 100.0 7.3E-29 1.6E-33 300.9 15.8 179 599-794 78-287 (590)
357 KOG0061 Transporter, ABC super 100.0 6.2E-28 1.3E-32 293.3 19.4 207 593-807 24-260 (613)
358 COG1119 ModF ABC-type molybden 100.0 3.4E-28 7.4E-33 252.6 12.4 195 592-801 29-256 (257)
359 cd03270 ABC_UvrA_I The excisio 99.9 1.8E-27 3.8E-32 256.6 17.3 179 609-800 7-226 (226)
360 PLN03073 ABC transporter F fam 99.9 3.5E-27 7.6E-32 291.1 21.1 205 593-808 176-432 (718)
361 COG4152 ABC-type uncharacteriz 99.9 1.5E-27 3.3E-32 245.2 14.7 205 594-810 2-222 (300)
362 PF00005 ABC_tran: ABC transpo 99.9 5.9E-28 1.3E-32 239.8 10.7 123 613-748 1-137 (137)
363 COG4172 ABC-type uncharacteriz 99.9 7.8E-27 1.7E-31 254.4 19.3 211 593-815 5-256 (534)
364 cd03271 ABC_UvrA_II The excisi 99.9 8.5E-27 1.9E-31 254.0 16.4 181 611-802 9-261 (261)
365 COG0488 Uup ATPase components 99.9 9.6E-26 2.1E-30 266.8 24.6 202 591-808 318-526 (530)
366 COG4674 Uncharacterized ABC-ty 99.9 1.1E-26 2.4E-31 231.2 12.9 199 594-808 5-236 (249)
367 KOG0064 Peroxisomal long-chain 99.9 1.6E-22 3.5E-27 226.5 40.4 450 327-784 166-674 (728)
368 COG0396 sufC Cysteine desulfur 99.9 1.3E-24 2.9E-29 223.1 21.0 201 594-807 3-233 (251)
369 cd03278 ABC_SMC_barmotin Barmo 99.9 2.6E-25 5.7E-30 234.3 12.6 153 614-792 14-189 (197)
370 COG4586 ABC-type uncharacteriz 99.9 3.7E-25 7.9E-30 231.4 11.5 192 609-814 36-253 (325)
371 COG4133 CcmA ABC-type transpor 99.9 6E-25 1.3E-29 218.9 12.0 173 597-784 5-195 (209)
372 COG4107 PhnK ABC-type phosphon 99.9 2.6E-24 5.5E-29 210.0 14.7 214 594-816 6-251 (258)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.8E-24 1.2E-28 232.3 14.6 177 610-792 15-234 (243)
374 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.1E-23 2.4E-28 225.3 13.6 180 594-796 5-211 (213)
375 cd03240 ABC_Rad50 The catalyti 99.9 4.4E-23 9.6E-28 218.7 14.2 153 616-793 16-197 (204)
376 PRK00349 uvrA excinuclease ABC 99.9 6.3E-23 1.4E-27 256.7 16.6 97 713-810 824-930 (943)
377 COG4778 PhnL ABC-type phosphon 99.9 3.2E-23 7E-28 201.9 9.9 187 595-792 5-226 (235)
378 KOG0059 Lipid exporter ABCA1 a 99.9 1.2E-22 2.5E-27 257.7 16.6 204 593-810 563-790 (885)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 6.6E-23 1.4E-27 224.9 11.8 172 623-795 25-247 (251)
380 KOG0927 Predicted transporter 99.9 5.1E-23 1.1E-27 232.6 11.0 199 592-805 387-594 (614)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.9 8.1E-23 1.8E-27 223.6 11.7 168 624-792 23-232 (247)
382 PRK00635 excinuclease ABC subu 99.9 2.5E-21 5.5E-26 251.3 21.0 96 713-809 803-908 (1809)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4E-22 8.6E-27 212.5 8.8 183 595-792 6-203 (212)
384 TIGR00630 uvra excinuclease AB 99.9 4.3E-21 9.4E-26 239.9 18.0 92 713-805 822-923 (924)
385 cd03239 ABC_SMC_head The struc 99.8 7.2E-21 1.6E-25 197.1 11.6 151 616-793 15-172 (178)
386 KOG0065 Pleiotropic drug resis 99.8 2.2E-21 4.9E-26 239.4 7.7 189 609-805 803-1019(1391)
387 PF00664 ABC_membrane: ABC tra 99.8 2.2E-17 4.7E-22 180.5 38.3 270 280-549 2-275 (275)
388 COG1129 MglA ABC-type sugar tr 99.8 2.9E-20 6.3E-25 214.7 15.8 181 612-799 274-482 (500)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.4E-19 3.1E-24 190.9 14.3 158 613-795 12-192 (198)
390 COG4138 BtuD ABC-type cobalami 99.8 1.7E-20 3.6E-25 183.8 4.8 184 612-808 14-222 (248)
391 KOG0927 Predicted transporter 99.8 2.3E-19 4.9E-24 203.3 14.6 208 592-809 73-311 (614)
392 KOG0066 eIF2-interacting prote 99.8 4E-19 8.6E-24 194.6 15.1 195 593-804 585-788 (807)
393 KOG0062 ATPase component of AB 99.8 5.1E-19 1.1E-23 199.5 12.9 192 593-798 361-559 (582)
394 COG3845 ABC-type uncharacteriz 99.8 4E-18 8.7E-23 192.9 17.4 205 592-804 255-489 (501)
395 KOG0062 ATPase component of AB 99.8 3.4E-19 7.5E-24 200.8 8.6 199 592-809 78-287 (582)
396 COG1245 Predicted ATPase, RNas 99.8 1.5E-18 3.3E-23 192.5 13.4 179 599-792 340-530 (591)
397 cd01128 rho_factor Transcripti 99.7 1.2E-18 2.6E-23 188.9 7.9 187 618-817 11-227 (249)
398 cd03280 ABC_MutS2 MutS2 homolo 99.7 4.7E-18 1E-22 180.1 10.0 146 612-799 16-171 (200)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3E-17 6.5E-22 175.1 15.7 177 614-795 15-211 (213)
400 PRK00635 excinuclease ABC subu 99.7 4E-17 8.6E-22 212.7 18.0 101 707-809 1688-1798(1809)
401 COG0178 UvrA Excinuclease ATPa 99.7 5.1E-17 1.1E-21 191.8 16.7 100 712-812 815-924 (935)
402 KOG2355 Predicted ABC-type tra 99.7 1.2E-16 2.6E-21 160.7 15.0 200 591-806 10-236 (291)
403 KOG0065 Pleiotropic drug resis 99.7 3.8E-17 8.2E-22 202.5 11.7 195 610-807 128-351 (1391)
404 cd03241 ABC_RecN RecN ATPase i 99.7 1.2E-16 2.5E-21 177.8 13.9 77 719-796 170-250 (276)
405 cd03227 ABC_Class2 ABC-type Cl 99.7 9.5E-17 2.1E-21 164.2 10.4 133 617-793 15-155 (162)
406 COG2401 ABC-type ATPase fused 99.7 5E-16 1.1E-20 170.6 12.4 177 610-797 396-588 (593)
407 COG1245 Predicted ATPase, RNas 99.6 2.6E-16 5.7E-21 174.9 9.7 176 599-792 79-287 (591)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.6 3.9E-16 8.5E-21 167.5 5.2 153 610-801 17-175 (222)
409 cd03242 ABC_RecF RecF is a rec 99.6 4.9E-15 1.1E-19 164.4 13.1 88 705-796 165-269 (270)
410 cd03243 ABC_MutS_homologs The 99.6 2.5E-15 5.4E-20 159.5 5.9 149 616-802 22-174 (202)
411 cd03283 ABC_MutS-like MutS-lik 99.5 9.7E-15 2.1E-19 154.2 8.3 135 610-785 14-154 (199)
412 TIGR00630 uvra excinuclease AB 99.5 2.1E-14 4.6E-19 180.3 12.2 95 713-808 481-584 (924)
413 COG4170 SapD ABC-type antimicr 99.5 1.7E-14 3.7E-19 145.5 8.4 206 597-814 6-256 (330)
414 PRK00349 uvrA excinuclease ABC 99.5 2.3E-14 4.9E-19 180.3 11.5 94 714-808 484-586 (943)
415 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.9E-13 4E-18 147.2 12.6 159 614-791 16-211 (220)
416 TIGR00606 rad50 rad50. This fa 99.4 3.3E-13 7.2E-18 179.2 12.2 122 664-791 1146-1288(1311)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.4 5.2E-13 1.1E-17 141.4 9.7 142 609-785 15-157 (204)
418 cd00820 PEPCK_HprK Phosphoenol 99.4 5.6E-13 1.2E-17 124.6 6.4 63 610-680 2-77 (107)
419 cd03284 ABC_MutS1 MutS1 homolo 99.4 1.3E-12 2.8E-17 139.9 8.7 147 610-804 18-178 (216)
420 KOG0066 eIF2-interacting prote 99.4 1.5E-12 3.2E-17 143.6 9.1 201 594-806 264-498 (807)
421 TIGR02858 spore_III_AA stage I 99.3 3.7E-12 8E-17 140.0 7.7 141 624-805 112-267 (270)
422 PHA02562 46 endonuclease subun 99.3 3.7E-12 8.1E-17 156.4 8.6 106 688-796 432-555 (562)
423 PRK00064 recF recombination pr 99.3 7.5E-11 1.6E-15 136.1 16.5 76 718-796 272-359 (361)
424 KOG0063 RNAse L inhibitor, ABC 99.2 2.3E-11 5E-16 134.8 10.2 195 600-808 341-549 (592)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.2 7.5E-11 1.6E-15 126.0 11.2 134 611-785 17-160 (213)
426 smart00534 MUTSac ATPase domai 99.2 2.4E-11 5.2E-16 127.2 5.5 131 626-796 2-139 (185)
427 TIGR01069 mutS2 MutS2 family p 99.1 1.3E-10 2.8E-15 145.2 11.5 145 594-781 295-447 (771)
428 PRK13695 putative NTPase; Prov 99.1 1.1E-10 2.3E-15 121.0 7.1 150 625-799 2-156 (174)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.1 3E-10 6.4E-15 121.7 9.7 136 610-783 18-158 (222)
430 TIGR00634 recN DNA repair prot 99.1 2.9E-10 6.2E-15 138.9 8.9 77 718-795 439-519 (563)
431 PRK10869 recombination and rep 99.0 3.7E-10 8.1E-15 136.7 8.9 77 718-795 429-509 (553)
432 PRK00409 recombination and DNA 99.0 3.5E-10 7.7E-15 141.6 8.9 139 611-785 316-456 (782)
433 PTZ00132 GTP-binding nuclear p 99.0 5E-10 1.1E-14 120.1 6.1 42 723-765 156-202 (215)
434 KOG0058 Peptide exporter, ABC 98.9 1.4E-08 3E-13 121.1 17.3 121 938-1058 191-315 (716)
435 KOG0063 RNAse L inhibitor, ABC 98.9 5.6E-10 1.2E-14 124.0 5.1 157 621-791 98-286 (592)
436 COG0178 UvrA Excinuclease ATPa 98.9 5.3E-09 1.2E-13 125.0 9.7 108 701-810 464-580 (935)
437 PRK08533 flagellar accessory p 98.9 2.3E-08 4.9E-13 108.3 13.8 145 619-792 20-184 (230)
438 PRK07721 fliI flagellum-specif 98.9 1.2E-08 2.5E-13 119.5 11.8 176 610-804 146-340 (438)
439 cd01124 KaiC KaiC is a circadi 98.8 3.7E-08 8E-13 103.0 13.1 141 626-792 2-163 (187)
440 PRK01156 chromosome segregatio 98.8 6.5E-09 1.4E-13 134.6 8.8 76 716-792 798-883 (895)
441 TIGR02788 VirB11 P-type DNA tr 98.8 4.1E-09 9E-14 119.2 5.4 143 616-806 137-280 (308)
442 PF00664 ABC_membrane: ABC tra 98.7 4.3E-07 9.4E-12 99.0 19.3 97 954-1050 60-156 (275)
443 PRK03918 chromosome segregatio 98.7 1.9E-08 4.2E-13 130.2 9.2 75 717-792 786-867 (880)
444 cd01131 PilT Pilus retraction 98.7 2.2E-08 4.8E-13 106.0 7.1 118 625-792 3-122 (198)
445 TIGR00958 3a01208 Conjugate Tr 98.7 5.3E-07 1.1E-11 113.8 20.2 135 906-1040 167-306 (711)
446 cd03286 ABC_MSH6_euk MutS6 hom 98.7 4.1E-08 8.9E-13 105.0 7.7 135 610-784 17-158 (218)
447 smart00382 AAA ATPases associa 98.7 4.5E-07 9.8E-12 88.6 14.6 118 622-778 1-125 (148)
448 PRK13830 conjugal transfer pro 98.7 1.3E-07 2.9E-12 120.0 13.4 67 734-801 649-727 (818)
449 TIGR02168 SMC_prok_B chromosom 98.7 2.4E-08 5.2E-13 133.4 7.0 75 716-791 1086-1164(1179)
450 cd01120 RecA-like_NTPases RecA 98.6 1.8E-07 3.9E-12 94.7 11.7 129 625-782 1-140 (165)
451 TIGR00618 sbcc exonuclease Sbc 98.6 5.4E-08 1.2E-12 127.5 9.5 77 717-794 948-1036(1042)
452 PRK06793 fliI flagellum-specif 98.6 1.8E-07 4E-12 108.6 11.6 167 595-801 131-305 (432)
453 TIGR03238 dnd_assoc_3 dnd syst 98.5 5.3E-08 1.2E-12 112.5 4.8 47 611-659 20-67 (504)
454 TIGR00101 ureG urease accessor 98.5 5.6E-08 1.2E-12 102.8 3.4 100 625-724 3-108 (199)
455 TIGR02169 SMC_prok_A chromosom 98.5 1.7E-07 3.8E-12 125.2 8.2 75 717-792 1072-1150(1164)
456 PRK06067 flagellar accessory p 98.5 1.8E-06 3.9E-11 93.9 14.1 137 619-781 21-167 (234)
457 TIGR00767 rho transcription te 98.5 4.2E-07 9E-12 103.7 9.3 87 557-650 98-195 (415)
458 PF13304 AAA_21: AAA domain; P 98.5 2E-07 4.3E-12 101.3 6.4 63 719-782 236-302 (303)
459 TIGR02203 MsbA_lipidA lipid A 98.5 8.3E-06 1.8E-10 100.7 21.3 107 938-1044 57-163 (571)
460 PRK10790 putative multidrug tr 98.4 1.1E-05 2.5E-10 99.9 21.3 98 942-1039 72-169 (592)
461 TIGR01194 cyc_pep_trnsptr cycl 98.4 2E-05 4.2E-10 96.9 21.7 100 940-1040 58-157 (555)
462 PRK02224 chromosome segregatio 98.4 7E-07 1.5E-11 115.7 8.8 76 718-794 780-869 (880)
463 TIGR01420 pilT_fam pilus retra 98.4 6.3E-07 1.4E-11 103.0 7.4 123 620-791 119-242 (343)
464 PRK10246 exonuclease subunit S 98.4 6.1E-07 1.3E-11 117.1 8.1 76 717-793 947-1032(1047)
465 PRK10522 multidrug transporter 98.4 1.9E-05 4.2E-10 96.8 20.8 97 944-1041 57-153 (547)
466 TIGR02868 CydC thiol reductant 98.3 2.8E-05 6E-10 95.1 21.1 96 946-1041 64-159 (529)
467 PRK11174 cysteine/glutathione 98.3 2.9E-05 6.4E-10 96.2 21.3 102 938-1039 66-167 (588)
468 PF09818 ABC_ATPase: Predicted 98.3 4E-06 8.6E-11 95.9 12.1 157 618-796 240-416 (448)
469 TIGR01193 bacteriocin_ABC ABC- 98.3 2.7E-05 6E-10 98.5 20.8 151 886-1039 144-299 (708)
470 TIGR01192 chvA glucan exporter 98.3 4.3E-05 9.3E-10 94.5 21.6 84 959-1042 80-163 (585)
471 TIGR03796 NHPM_micro_ABC1 NHPM 98.3 3.5E-05 7.5E-10 97.7 21.2 103 938-1041 197-299 (710)
472 TIGR00611 recf recF protein. A 98.2 1.3E-06 2.9E-11 100.8 6.7 62 719-783 275-345 (365)
473 PRK12369 putative transporter; 98.2 0.012 2.6E-07 67.0 38.1 218 338-574 83-320 (326)
474 TIGR02857 CydD thiol reductant 98.2 5.8E-05 1.3E-09 92.3 21.1 103 937-1039 46-148 (529)
475 PRK13657 cyclic beta-1,2-gluca 98.2 6.8E-05 1.5E-09 92.9 21.8 137 905-1041 24-162 (588)
476 TIGR01846 type_I_sec_HlyB type 98.2 5.9E-05 1.3E-09 95.3 21.4 102 939-1041 183-284 (694)
477 PRK01889 GTPase RsgA; Reviewed 98.2 1.4E-06 3E-11 100.5 6.2 88 612-699 184-286 (356)
478 TIGR02204 MsbA_rel ABC transpo 98.2 7.8E-05 1.7E-09 92.2 21.5 103 938-1040 61-163 (576)
479 cd02023 UMPK Uridine monophosp 98.2 1.4E-06 3E-11 92.3 5.1 108 625-754 1-115 (198)
480 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 7.8E-05 1.7E-09 94.1 21.3 103 938-1041 179-281 (686)
481 PRK11160 cysteine/glutathione 98.2 0.0001 2.2E-09 90.9 21.6 98 943-1040 68-165 (574)
482 cd01125 repA Hexameric Replica 98.2 3.9E-06 8.4E-11 91.7 8.0 126 623-780 1-160 (239)
483 COG3910 Predicted ATPase [Gene 98.2 2.8E-05 6.2E-10 78.7 13.3 174 610-805 23-214 (233)
484 PRK06995 flhF flagellar biosyn 98.1 1.3E-06 2.7E-11 103.1 3.6 142 615-778 248-401 (484)
485 PRK11098 microcin B17 transpor 98.1 0.012 2.5E-07 68.6 35.4 217 339-574 159-394 (409)
486 PF13748 ABC_membrane_3: ABC t 98.1 0.011 2.3E-07 63.0 31.7 178 269-459 2-180 (237)
487 cd01130 VirB11-like_ATPase Typ 98.1 2.6E-06 5.7E-11 89.3 4.3 48 612-659 14-61 (186)
488 PRK14079 recF recombination pr 98.1 6.4E-06 1.4E-10 94.8 7.7 75 719-799 263-346 (349)
489 PRK10789 putative multidrug tr 98.0 0.00013 2.8E-09 90.0 18.7 102 938-1039 39-141 (569)
490 PRK11176 lipid transporter ATP 98.0 0.00032 6.9E-09 86.9 21.8 98 944-1041 74-171 (582)
491 TIGR02655 circ_KaiC circadian 98.0 1.3E-06 2.7E-11 105.1 -0.2 141 619-792 17-190 (484)
492 COG1132 MdlB ABC-type multidru 98.0 0.00031 6.7E-09 86.7 20.6 103 938-1040 55-157 (567)
493 TIGR00235 udk uridine kinase. 98.0 6.5E-06 1.4E-10 87.9 4.9 45 620-672 3-47 (207)
494 PF06472 ABC_membrane_2: ABC t 98.0 0.016 3.5E-07 64.9 31.8 194 286-482 36-235 (281)
495 TIGR01026 fliI_yscN ATPase Fli 97.9 7.7E-05 1.7E-09 87.8 12.6 175 610-804 151-345 (440)
496 PLN03210 Resistant to P. syrin 97.9 2.1E-05 4.5E-10 104.5 8.8 141 616-792 200-349 (1153)
497 PRK13891 conjugal transfer pro 97.9 4.6E-05 1E-09 97.6 11.3 54 730-784 680-735 (852)
498 TIGR03375 type_I_sec_LssB type 97.9 0.0006 1.3E-08 86.3 21.0 98 941-1040 193-290 (694)
499 COG3044 Predicted ATPase of th 97.8 0.0001 2.2E-09 82.5 11.1 156 617-797 237-412 (554)
500 PRK06002 fliI flagellum-specif 97.8 3.9E-05 8.4E-10 89.6 8.2 63 592-657 137-199 (450)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-182 Score=1694.94 Aligned_cols=852 Identities=40% Similarity=0.658 Sum_probs=772.7
Q ss_pred CCCCCcCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 001528 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1059)
Q Consensus 197 ~~p~~~a~~--~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1059)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. .++|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 344445554 99999999999999999999999999999999999999999999999987432 2568999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1059)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~ 354 (1059)
|++++++.+++..+.+...+++|++++.+++|.++++.+.+.|+.++++++++.++++++.++|++..+++|+|+|+++.
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999987766778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1059)
Q Consensus 355 ~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~ 434 (1059)
++||+|+|++++.+++++++|+|+|+|++|++|+++++.++|.+|++|+|+++++++||..+|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1059)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~v 514 (1059)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+|+||+.|.+++++.|++|+++++|..+..++..++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCc
Q 001528 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1059)
Q Consensus 515 ~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1059)
++++|++|++..++.++++++|+++++||+++.|+.++|..++.+.|+.||++|+++||..+|.+++...+.+..+.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953347899999999999999999999999999999999999999999999999987655543333445668
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCH
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TI 674 (1059)
|+++|++|+|+++++.|+|+||||+||+|+++||||++||||||||++|||||++.+|+|.++|++|||||+||||||||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHH
Q 001528 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1059)
Q Consensus 675 reNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t 754 (1059)
||||+||+|||++||++|+++|+|++|++.||+||+|+|||||+||||||||||+||||||+|+||||||||+||||+||
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHHhhhhcccCCCCCCCCC
Q 001528 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1059)
Q Consensus 755 ~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 834 (1059)
++|||++||++.+++||||+|||++++|++||+|++|+||+|.++|||+||++.++.|.++..+...+.+...+. ...
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~--~~~ 756 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASE--KDL 756 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcccccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999998843322111110000 000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-ccccccCCCCchhhhhhcCcccHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 001528 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1059)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~ 913 (1059)
...+.....+. +... ..+...+. ...++...+++++|++++|+|+|++|++|+++++|+..+++.++++++.+
T Consensus 757 ~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 757 ESGESSRESES---RSLE---SLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred cccccccchhh---hhhh---hhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000000000 0000 00000000 00111235677889999999999999999998778888877788899999
Q ss_pred HHHHhHHHHHhhhccCCc------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Q 001528 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1059)
Q Consensus 914 ~~~~~~~~Wl~~w~~~~~------~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd 987 (1059)
++++++||||++|++.+. .+..+|+++|++++++++++.+++++.++.++++||++||++|+++|+||||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 35678999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCC
Q 001528 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQVDQAFTS 1059 (1059)
Q Consensus 988 ~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~~ipl~~~~~~~q~~y~~t~ 1059 (1059)
+||+||||||||||++.||..+|..+.++++++++++++++++++++|+++++++|+.++|+++|+||+.||
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~ts 982 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATS 982 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.1e-145 Score=1430.98 Aligned_cols=1020 Identities=27% Similarity=0.431 Sum_probs=804.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cCCCccc-chhHHHHHHHHHHHHHHHHHHH---HHHHhhhccCCc-
Q 001528 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIR-RECVSIVVSACCAVVGIAYLGY---CLWNLIAKNDSS- 95 (1059)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~- 95 (1059)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.+ ..+.+..+.++........++. +......+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888643 431 2122222 2223322222222222111211 111111111111
Q ss_pred chh-HH-HHHHHHHHHHHHHHHHHh---c--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhccccccccchhhHHHH
Q 001528 96 MSW-LV-STVRGLIWVSLAISLLVK---R--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1059)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1059)
.+. .. .....++|+...+++..+ + .+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 223455555433222222 2 223346668889887 33322222222221110 1224444444443
Q ss_pred HHHHH-hhhc-cCCCCCCC------CCCCCCcccccccCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 001528 166 LLFSA-FRNF-SHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1059)
Q Consensus 166 ~~~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~ 237 (1059)
+.+.. +... .+...+.. ..+..+++...+++++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 1111 11111110 0112344555567789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 001528 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1059)
Q Consensus 238 ~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g 317 (1059)
|+++.+.++|++.|+++.++ ++++++++++++|++.++..+++.++.+++.+++|++++.+++++.+++. .+.+
T Consensus 267 ~~~~~~~~~~~~~w~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELKK-----PKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH
Confidence 99999999999999876422 34789999999999999999999999999999999999999999865432 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHH
Q 001528 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1059)
Q Consensus 318 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~ 397 (1059)
+.+++++++..++.+++.++|++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777888889999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 001528 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1059)
Q Consensus 398 ~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~ 477 (1059)
+|..|++++++++++|..+|+++++|++++++++|++..+.+++++.+++.++.+|+|.+.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1059)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~ 557 (1059)
|.+++++.|++|++..++..+...+..+++...|.++++++|.+|.+.+ +.+|++.+|+++++++.+..|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777777777777778777888888887765 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChh
Q 001528 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1059)
Q Consensus 558 ~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKS 637 (1059)
.+.++++|++||++|++.+|..+.... +.......|+++|++|+|++++++++|+|+||+|++||+++||||||||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 999999999999999986654321111 111123469999999999865456899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCc-cEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCC
Q 001528 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1059)
Q Consensus 638 TLl~~llGe~~~~~-G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 716 (1059)
||+++|+||++|.+ |+|.++|+||||||+||||||||||||+||+|+|+++|++|+++|+|++|++.||+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
|.||||||||||+||||+|+|||||||||||||||+|++++|+++|+++.+++||+|+||||++++++||+|++|+||+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEecChHHHHHcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccccccccCCCCchh
Q 001528 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1059)
Q Consensus 797 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 876 (1059)
+++|+|+||+++++.|+++++.+....+..++. ...+.++.+.. .....+. ... .+...+.+..++...++.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEEN---GEEEDDQTSSK-PVANGNA-NNL-KKDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccccc---ccccccccccc-ccccccc-ccc-cccccccccccccchhhhhH
Confidence 999999999999999999886543211110000 00000000000 0000000 000 00000000000111235677
Q ss_pred hhhhcCcccHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCc---cCchHHHHHHHHHHHHHHHHHH
Q 001528 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1059)
Q Consensus 877 E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w~~~~~---~~~~~~l~vY~~l~~~~~~~~~ 953 (1059)
|++++|.|+|++|++|+++.++++.+++++++.++.+++.+++++|+++|++... .....|+++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999997666655555566667778888899999999986421 2346789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1059)
Q Consensus 954 ~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~ 1033 (1059)
++.+++...+.++++++|++|+++++|+||+|||++|+|||+||||+|++.+|..+|..+..++..++.++++++++++.
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Q 001528 1034 TWQVLVVAIFAMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 1034 ~p~~~~~~ipl~~~~~~~q~~y~~t 1058 (1059)
.|+++++++|+.++++++++||.++
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~ 1076 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQST 1076 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888899988888889888754
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-142 Score=1406.66 Aligned_cols=1016 Identities=25% Similarity=0.417 Sum_probs=797.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCC-cch
Q 001528 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDS-SMS 97 (1059)
Q Consensus 23 ~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~ 97 (1059)
|||||+++++|+||+|+|+++|.+++..+++++..++.+. .+.+....++........++..+. ....+... ..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPP 109 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 9999999999999999999999988754322222233222 223322222222222222211111 11111111 011
Q ss_pred h-HH-HHHHHHHHHHHHHHHHH---hc--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 001528 98 W-LV-STVRGLIWVSLAISLLV---KR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLLL 167 (1059)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1059)
. .. .....++|+...+++.. ++ .+...+.+++||++. +++...........+.. ...++..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 188 (1495)
T PLN03232 110 FEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTA-LYLCISSRCCQALFG 188 (1495)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhccc-cceehhHHHHHHHHH
Confidence 1 11 22234444432222221 12 233346678899887 33332221211111100 122444444433322
Q ss_pred HHH-hhhc-cCCCCCCCC-------CCCCCcccccccCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccC
Q 001528 168 FSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238 (1059)
Q Consensus 168 ~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~~ 238 (1059)
+.. +... .+.. +... ++..++..+.+.+++||++||++||++|||++|++++|||++|+.+|||+++++|
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~ 267 (1495)
T PLN03232 189 ILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWD 267 (1495)
T ss_pred HHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhh
Confidence 221 1111 1111 1000 0000111112456789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHH
Q 001528 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGL 318 (1059)
Q Consensus 239 ~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~ 318 (1059)
+++.+.++|++.|+++.+ .++++++++++++|++.++..+++.++.+++.+++|++++.+++++.+++. .+.++
T Consensus 268 ~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~ 341 (1495)
T PLN03232 268 QTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGY 341 (1495)
T ss_pred hHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHH
Confidence 999999999999987542 235789999999999999999999999999999999999999999865432 34577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001528 319 SIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398 (1059)
Q Consensus 319 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~ 398 (1059)
.+++++++..++.+++.++|++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l 421 (1495)
T PLN03232 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGL 421 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77878888888888888888888899999999999999999999999998889999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 001528 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1059)
Q Consensus 399 ~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f 478 (1059)
|..|++++++++++|..+|+++++|++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+
T Consensus 422 ~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~ 501 (1495)
T PLN03232 422 WSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSF 501 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSI 558 (1059)
Q Consensus 479 ~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~ 558 (1059)
.+++++.|++|++..++......+..+++...|.++.+++|+++.+.+ +++|++.+|+++++++.+..|+..+|..+..
T Consensus 502 ~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~ 580 (1495)
T PLN03232 502 ESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887776666666666667777777787777665 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhH
Q 001528 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSS 638 (1059)
Q Consensus 559 ~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKST 638 (1059)
+.++++|++||++|++.+|...+.. .+.......|+++|++|+|++++++++|+|+||+|++||+++|||||||||||
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKST 658 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTS 658 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 9999999999999997655321111 11111234699999999998654578999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcc-EEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCC
Q 001528 639 LLYAILGEIPKISG-TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1059)
Q Consensus 639 Ll~~llGe~~~~~G-~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 717 (1059)
|+++|+||++|.+| .+.++|+||||||+||||||||||||+||+|+|+++|++|+++|+|++|++.||+||+|+|||+|
T Consensus 659 Ll~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 659 LISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred HHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 99999999999997 45778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEE
Q 001528 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 797 (1059)
.||||||||||+||||+|+|||||||||||||||+||+++|+++|+.+.+++||+|+||||+++++.||+|++|+||+|+
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EecChHHHHHcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccccccccCCCCchhh
Q 001528 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1059)
Q Consensus 798 e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E 877 (1059)
++|+|+||+++++.|+++++.+....+..++ .+ ..++..+... ..+.+. ..+.....+..++....++++|
T Consensus 819 ~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~--~~--~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~e 889 (1495)
T PLN03232 819 EEGTFAELSKSGSLFKKLMENAGKMDATQEV--NT--NDENILKLGP--TVTIDV---SERNLGSTKQGKRGRSVLVKQE 889 (1495)
T ss_pred EecCHHHHHhcchhHHHHHHhcccccccccc--cc--cccccccccc--cccccc---cccccccccccccchhhhhhHH
Confidence 9999999999999999988654321110000 00 0000000000 000000 0000000000001112356788
Q ss_pred hhhcCcccHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHhHHHHHhhhccCCc---cCchHHHHHHHHHHHHHHHHHHH
Q 001528 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYF 954 (1059)
Q Consensus 878 ~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w~~~~~---~~~~~~l~vY~~l~~~~~~~~~~ 954 (1059)
++++|.|+|++|++|+++.++++.+.+++++.++.++..+++++|+++|++... ....+|+++|++++++..++.++
T Consensus 890 ~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~ 969 (1495)
T PLN03232 890 ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFT 969 (1495)
T ss_pred HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998766566555666666778888899999999987532 23568999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001528 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1059)
Q Consensus 955 ~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~ 1034 (1059)
+.+++...+.++++++|++|+++++|+||+|||++|+|||+||||+|++.||..+|..+..++.+++.+++++++++...
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 001528 1035 WQVLVVAIFAMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 1035 p~~~~~~ipl~~~~~~~q~~y~~t 1058 (1059)
|.++++++|+.+++++++++|..+
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQST 1073 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889888888888888765
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.7e-136 Score=1348.16 Aligned_cols=1031 Identities=28% Similarity=0.447 Sum_probs=801.7
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 001528 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1059)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1059)
.||| ||||++++++|+|+.++++++|+.+++..+++ +...+.++ .+.....+..++.+..+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHD--RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4788 99999999999999999999998876332222 22122222 222222222222222233334432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---ccccccchhhHHHHHH
Q 001528 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1059)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1059)
....+...+..++|+..++....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11122334444455432222222222 22335667888876654332 11111111100 0111111122221111
Q ss_pred HHHhhhccCCCCCCCCCCCCCcccccccCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHH
Q 001528 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1059)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~~~~~~~~~~f 247 (1059)
...+.... ..+ +.+..++...+.+++||++||++||++|||+||++++|||++|+.+|||+++++++++.+.++|
T Consensus 177 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSC--FSD---KSPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHh--hcC---CCCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 11111100 000 0000011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001528 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1059)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 291 (1059)
++.|+++.++.+ ++.++++++++++++|++.++..+++.++..+
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998743210 11234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 001528 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1059)
Q Consensus 292 ~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~ 371 (1059)
+.+++|++++.+++++.++..+...|+.+++++++..++.+++.++|++...++++++|.+++..+|+|+++++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999986554445568888888888888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1059)
Q Consensus 372 ~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~ 451 (1059)
.++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++..+++++++.++++++.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Q 001528 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1059)
Q Consensus 452 ~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~l~~-~~~l 530 (1059)
+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+......+.+...|.++.+++|++|.+.. ++.+
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999998887777777667777788888888888777664 4679
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccc-cCCCCcEEEEeeeEeeCCCCC
Q 001528 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1059)
Q Consensus 531 t~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~sf~~~~~~~ 609 (1059)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++|++.+|.++...+.... +.....|+++|++|+|+.+ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999876543221111111 1112379999999999743 3
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y 689 (1059)
+++|+|+||+|++||+++|+||+|||||||+++|+|+++|.+|+|.++|+||||||+||+|++||||||+||+++|+++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHH--HHhc
Q 001528 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAAL 767 (1059)
Q Consensus 690 ~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i--~~~l 767 (1059)
++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++.++ .+.+
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877 3567
Q ss_pred CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHHhhhhcccCCCCCC--C--CCCCccc--cc
Q 001528 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--A--GQGGAEK--VE 841 (1059)
Q Consensus 768 ~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~--~--~~~~~~~--~~ 841 (1059)
+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++++.|.++.+.+....+..+..+. . ...+.+. .+
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999989998887644321110000000 0 0000000 00
Q ss_pred cc--------cCCCCC---CCCC-CCCCCCC-cc---cc-cccccCCCCchhhhhhcCcccHHHHHHHHHHcChhHHHHH
Q 001528 842 KG--------RTARPE---EPNG-IYPRKES-SE---GE-ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1059)
Q Consensus 842 ~~--------~~~~~~---~~~~-~~~~~~~-~~---~~-~~~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~ 904 (1059)
++ .....+ .... ....... +. .+ ..++...++.++|+++.|+|+|++|+.|+++. |+..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~-g~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAI-GLFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHc-CHHHHHH
Confidence 00 000000 0000 0000000 00 00 00011134567788899999999999999975 5555555
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCCc-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1059)
Q Consensus 905 ~~~~~~~~~~~~~~~~~Wl~~w~~~~~-----~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vl 979 (1059)
++++.++.+++.++.+||+++|++... .+..+|+++|++++++..++.+++.+++.+.+.++++++|++|+++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888999999999986421 224578899999999999998888888889999999999999999999
Q ss_pred cCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001528 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 980 raPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~~ipl~~~~~~~q~~y~~t 1058 (1059)
|+||+|||++|+|||+|||++|++.+|..+|..+..++..++.+++.++++++..|+++++++|+.+++++++++|.++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVAS 1128 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999899999888899999999999999765
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-126 Score=1257.29 Aligned_cols=852 Identities=26% Similarity=0.423 Sum_probs=722.5
Q ss_pred CCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 001528 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1059)
Q Consensus 197 ~~p~~~a~~~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1059)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.+.++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998765321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1059)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~ 355 (1059)
+.+++.+++.++.+++.+++|++++.+++|++..+. ....++.++++++++.++++++.+++++...+.++++|.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853222 2346788888889999999999888899999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1059)
Q Consensus 356 ~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~ 435 (1059)
.+|+|+++++....++.++|+++|+|++|++++.++..++|.+|..|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1059)
Q Consensus 436 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~v~ 515 (1059)
++++++.++++++++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++.+++..+......++++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777777777788888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCc
Q 001528 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1059)
Q Consensus 516 ~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1059)
+++|++|.+.+ .++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 88998887764 3689999999999999999985 799999999999999999999998776542110 112346
Q ss_pred EEEEeeeEeeCCC-------------------------------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHH
Q 001528 595 VKIQEGNFSWDPE-------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1059)
Q Consensus 595 i~~~~~sf~~~~~-------------------------------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~l 643 (1059)
++++|++|+|+.. ..+++|+|+||+|++|++++|+||+|||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999531 014689999999999999999999999999999999
Q ss_pred hCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 644 lGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
+|+++|.+|+|.++|+||||||+||+|++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChH
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||||+||||+|++||||||||||||||++++++++++|+.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998998888999999999999999999999999999999999999
Q ss_pred HHHHcCchHHHHHHHhhhhc----c------c-------CC--------CCCC-CC--CCCcc--cc-------------
Q 001528 804 ELLLAGTAFEQLVNAHRDAI----T------G-------LG--------PLDN-AG--QGGAE--KV------------- 840 (1059)
Q Consensus 804 eL~~~~~~~~~l~~~~~~~~----~------~-------~~--------~~~~-~~--~~~~~--~~------------- 840 (1059)
|+.+.++.|.+.+....... . . .+ +.+. .. +...+ +.
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99988777776663110000 0 0 00 0000 00 00000 00
Q ss_pred ----------------c-cc-c-CCC-------CC-----CC--CCCC--------------------C-----CCC-C-
Q 001528 841 ----------------E-KG-R-TAR-------PE-----EP--NGIY--------------------P-----RKE-S- 860 (1059)
Q Consensus 841 ----------------~-~~-~-~~~-------~~-----~~--~~~~--------------------~-----~~~-~- 860 (1059)
+ +. . ... ++ ++ .... . .+. .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 00 0 000 00 00 0000 0 000 0
Q ss_pred -----------------cc--------ccc-----c-----cccCCCCchhhhhhcCcccHHHHHHHHHHcChhHHHHHH
Q 001528 861 -----------------SE--------GEI-----S-----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1059)
Q Consensus 861 -----------------~~--------~~~-----~-----~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~ 905 (1059)
.+ .+. . .+...++.++|+++.|.|+|++|++|+++++++.+++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 0 000013456788899999999999999987665555555
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccCC---------cc-------------CchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1059)
Q Consensus 906 ~~~~~~~~~~~~~~~~Wl~~w~~~~---------~~-------------~~~~~-l~vY~~l~~~~~~~~~~~~~~~~~~ 962 (1059)
+++.++.+++..+.+||+++|.+.. +. ...+| +++|.+++.+..++.+++.+++...
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999886421 00 11233 5566666656667778899899999
Q ss_pred HHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001528 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1059)
Q Consensus 963 ~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~~i 1042 (1059)
+.++++++|++|+++++++|++|||++|+|||+|||++|++.||..+|..+..++.+++.+++.++++++..|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHhccC
Q 001528 1043 FAMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 1043 pl~~~~~~~q~~y~~t 1058 (1059)
|+++++++++++|+.+
T Consensus 1033 ~l~~~~~~~~~~~~~~ 1048 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRT 1048 (1490)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999765
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.3e-117 Score=1167.15 Aligned_cols=860 Identities=26% Similarity=0.405 Sum_probs=720.8
Q ss_pred CCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcC---------------
Q 001528 196 NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNS--------------- 260 (1059)
Q Consensus 196 ~~~p~~~a~~~s~~~F~W~~pl~~~g~k~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~--------------- 260 (1059)
.+.||++|||+.++++.|++|.+.+..|..|+.+|+|+...+.|+-+...++.+..++...++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 35699999999999999999999999999999999999999999988777776554432211000
Q ss_pred --------------------------------------------------------------------------------
Q 001528 261 -------------------------------------------------------------------------------- 260 (1059)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (1059)
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence
Q ss_pred ----------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Q 001528 261 ----------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVV 330 (1059)
Q Consensus 261 ----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~ 330 (1059)
.++..++++++++++++.++..++++++.+++.+++|++++.+++++++++.....|+.+++++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 0111268999999999999999999999999999999999999999865544555678888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001528 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA 408 (1059)
Q Consensus 331 ~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~--~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~ 408 (1059)
++++.+++++...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.++..++|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH
Q 001528 409 IGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488 (1059)
Q Consensus 409 ~~~L~~~lg~~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~ 488 (1059)
+++||.++||++++|++++++++|++.++++++.+.+++.++.+|+|++.++|+++|||+||+++||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDR 568 (1059)
Q Consensus 489 El~~l~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~R 568 (1059)
|++.+++..+...+..+++...|.++.+++|++|.+.+ ++||++++|+++++|+.++.|+.++|..++.+.++.+|++|
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888899999999999888776 78999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCc------hh--------h--h-----------------cc-------------------------ccC
Q 001528 569 INAFLLDHELNND------DV--------R--R-----------------IS-------------------------LQK 590 (1059)
Q Consensus 569 i~~fL~~~e~~~~------~~--------~--~-----------------~~-------------------------~~~ 590 (1059)
|++||..+|.+.. +. . . .+ ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 9999987652110 00 0 0 00 000
Q ss_pred CCCcEEEEeeeEeeCCC-------------------------------------CCCCcccceeeeecCCcEEEEEccCC
Q 001528 591 SDRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1059)
Q Consensus 591 ~~~~i~~~~~sf~~~~~-------------------------------------~~~~~L~~inl~i~~G~~vaIvG~sG 633 (1059)
....+.++|++|+|+.. .++++|+|+||+|++|++++|+||+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11246677777765310 12468999999999999999999999
Q ss_pred CChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccc
Q 001528 634 AGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713 (1059)
Q Consensus 634 sGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 713 (1059)
||||||+++|+|+++|++|+|.++++||||||+||++++||+|||+|+.++++++|++++++|+|++|++.+|+||+|++
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeC
Q 001528 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 714 Ge~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++|+|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999998777789999999999999999999999999
Q ss_pred CeEEEecChHHHHHcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCcccccccccCCC
Q 001528 794 GQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQ 872 (1059)
Q Consensus 794 G~I~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 872 (1059)
|+++++|+|+|+++. +.|.++........+..+.....+.. +.+.+................. +..+.........+
T Consensus 857 G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 857 GRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVA-EVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred CEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccc-cccccccccccccccccccccccccccccccccccch
Confidence 999999999999875 45777664322111000000000000 0000000000000000000000 00000000011245
Q ss_pred CchhhhhhcCcccHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHhHHHHHhhhccCC-ccCchHHHHHHHHHHHHHHHH
Q 001528 873 LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVF 951 (1059)
Q Consensus 873 l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w~~~~-~~~~~~~l~vY~~l~~~~~~~ 951 (1059)
+.++|+++.|.|+|++|+.|+++.+|+..++.+++.+++.+++..+.++|+++|++.. ..+...|+++|++++++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 6678888999999999999999876665555555555666778889999999998643 234567899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001528 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031 (1059)
Q Consensus 952 ~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~ 1031 (1059)
.+++.+.....+.++++++|++|+++++++|++|||++|+|||+|||++|++.+|..+|..+..++..++.+++++++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccC
Q 001528 1032 FVTWQVLVVAIFAMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 1032 ~~~p~~~~~~ipl~~~~~~~q~~y~~t 1058 (1059)
+..|.++++++|+.+++++++++|..+
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~ 1121 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSA 1121 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899988888888888888888887653
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-86 Score=807.27 Aligned_cols=775 Identities=19% Similarity=0.230 Sum_probs=557.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCCC--cc---h-HHHHHHHHHHHHHHHHHHH-HHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYA---FVNYSNRGE--EN---L-QEGLSIVGCLIITKVVESF-TQR 336 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~---li~~~~~~~--~~---~-~~g~~l~~~l~~~~~~~~~-~~~ 336 (1059)
+.+.+.-+-+.++++..+..+...+.+..+|++... +.+.+.... .. . ..++.++ .+.+..++.++ ...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 333333344667777777777788888888987543 333222111 11 1 1122221 22222222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001528 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGV 415 (1059)
Q Consensus 337 ~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~ 415 (1059)
+|.+.+.|...|+|..+...+.+ .....++.+++|++++.|+.|++++++...- +..+......++.++++.|..
T Consensus 94 c~~~~geRq~~riR~~yl~~iLr----Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILR----QDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888887666655 4445556677799999999999999886531 222222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 001528 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE 495 (1059)
Q Consensus 416 lg~~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~ 495 (1059)
.+..+++.+.+..++......+++.+.+...+..++..+.-.+++|.+++||++-.|+-|+...++..+.-+.-.|.-.+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555566678888888888888888899999999999999999999987666655543333333222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001528 496 AQLRKAYG-TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1059)
Q Consensus 496 ~~~~~~~~-~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~ 574 (1059)
..+...+. .+.+.+.-...+...|.|..++..+..+++.+++++...-.-...+.+....+..+.+++++..+|.+.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 22322222 22222333334455566645555578899998887766556667788888889999999999999999886
Q ss_pred CC-CCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccE
Q 001528 575 DH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1059)
Q Consensus 575 ~~-e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~ 653 (1059)
.. +.++............+.|+|+|+.|+||.+++.++|+|+||+||+||.+|+||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 43 33322211222334567899999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 654 I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
|.+|| +|+.|.|+|.+|++||+|||.||+| .+++++.+++++++.++++..||+|++|.|||+|..
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99998 5999999999999999999999998 589999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
||||||||||||||+.+||+||||||||||||++.|+. +++++....+|||+|+||||++++++||+|+||++|+|+|+
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~-Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV-VQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH-HHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999985 68999999999999999999999999999999999999999
Q ss_pred cChHHHHHcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCC--CCCCcc-cccccccCCCCchh
Q 001528 800 GNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYP--RKESSE-GEISVKGLTQLTED 876 (1059)
Q Consensus 800 Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~ 876 (1059)
|+|+||++.+|.|++|++.|.......+..++++ ..++.+....... ......+ ...... ...+.+.......+
T Consensus 569 G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~--~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 645 (1228)
T KOG0055|consen 569 GTHDELIALGGIYSSLVRLQELEKAAEDEEEEES--LKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEEPVSE 645 (1228)
T ss_pred cCHHHHHhccchHHHHHHHHhhhhhhhccccccc--hhhhhhhcccccc-ccccccCCcccccccccccccccccccccc
Confidence 9999999999999999988754432111000000 0000000000000 0000000 000000 00000000000011
Q ss_pred hhhhcCcccHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-----CCc---cCchHHHHHHHHHHHH
Q 001528 877 EEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQ-----IPK---ITSGILIGVYAGVSTA 947 (1059)
Q Consensus 877 E~~~~G~V~~~vy~~Y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w~~-----~~~---~~~~~~l~vY~~l~~~ 947 (1059)
|+ ....+++-++.+. .|.++++.+++.++..+..+...+-++.-.+ +++ .....|..+|.++|+.
T Consensus 646 ~~------~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 646 ED------EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred cc------ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223555555444 4666666666666665555555555543211 111 1233588899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--cChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHH
Q 001528 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1059)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~--tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~ 1025 (1059)
+.++.++..+++...|.+..+++...|++++||.++.|||. |. |+|.+|+++|...|-..+...+..+++++..++.
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 56 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHhcc
Q 001528 1026 IIGIMTFVTWQVLVV---AIFAMVAVRFVQVDQAF 1057 (1059)
Q Consensus 1026 ~~~vi~~~~p~~~~~---~ipl~~~~~~~q~~y~~ 1057 (1059)
++++.++..|.+.++ ..|++++..+.|.+++.
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~ 833 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLK 833 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999665 47999999888887754
No 8
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-85 Score=764.13 Aligned_cols=548 Identities=20% Similarity=0.264 Sum_probs=442.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
+.+.+..|+.+..+.++.++..+.....|.++..+++.+...++.....--...++.+..+..+++.....+..+..+.|
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888899999999999999999987654222211111112222233333444443334444555666
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~-~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
+-..++..+|++.++...++++++.+||++|+++.|++.+.+. ..++.....+.+|.+.++.+++..-.-.+++.++.+
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~ 298 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVV 298 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 6666666789999999999999999999999999999999874 456778888888988888877655444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYG 503 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1059)
.+++.+...+++++++..++..++..+-.+..+|.|++||+||+|+-|+. |.+++++.++... |......+.
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~----k~a~a~~~f 374 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK----KEAVAYGIF 374 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhhHh
Confidence 44455566788888999888888899999999999999999999999864 5555554444332 222221111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 001528 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1059)
Q Consensus 504 ~~-~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1059)
.. ...+....+..+.|.|..++..+.+|++...+++.+-..+..++..+....+.++++..|.+|+.++++.++.-+.+
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 11 11122223344455565666668999999999999999999999999999999999999999999999854432212
Q ss_pred hhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----
Q 001528 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1059)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---- 658 (1059)
....+ ....+.|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||++++|+++|+|++|+|.+||
T Consensus 455 G~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 455 GTLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred Ccccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 11112 1456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 ---------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
+||+|.|||.+|++||+|||.||.+ .++|++++|++.|+.+++|..+|+||+|.|||||..|||||||||
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 5999999999999999999999998 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|||||+++||.||||||+|||||+++|.. +++++.+.+++||||+|+||++++++||+|+|+++|+++|.|+|+||+++
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYL-VQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHH-HHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 99999999999999999999999999985 58999999999999999999999999999999999999999999999998
Q ss_pred C-chHHHHHHHhhhh
Q 001528 809 G-TAFEQLVNAHRDA 822 (1059)
Q Consensus 809 ~-~~~~~l~~~~~~~ 822 (1059)
. |.|++|++.+...
T Consensus 693 ~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 693 PNGLYAKLVQRQLDS 707 (716)
T ss_pred cccHHHHHHHHhccc
Confidence 7 8999999876543
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-81 Score=770.81 Aligned_cols=547 Identities=21% Similarity=0.247 Sum_probs=423.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1059)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1059)
++.+.+.+++.+++..++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888889999999999999999999998653111111222223334444455555555555566678899
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1059)
Q Consensus 348 r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1059)
++...++..+|+|.++++....++.++|+++|++++|++++.++.. .+..++...+..++++++++..-.+.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988653 344555555555555544443333233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001528 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAY 502 (1059)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~~~ 502 (1059)
+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.++.+.+..+.......+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556777888888888999999999999999999999999998776665 44444444433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001528 503 GTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1059)
Q Consensus 503 ~~~~~~~~~~~v~~~~f~~~~l~~~-------~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~ 575 (1059)
..++..+ +. +.++.++++.+.+. ..+++..++.++.+...+..|+..++..+..+.+++++.+|+.++++.
T Consensus 253 ~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 253 LEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2111111 11 11223333333321 122334455555677778899999999999999999999999999976
Q ss_pred CCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEE
Q 001528 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1059)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~ 655 (1059)
++.++.......+......|+++|++|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|++ |.+|+|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 331 PLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 5432211111111112346999999988764 357999999999999999999999999999999999999 8999999
Q ss_pred EcC-------------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 656 v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
++| +|+||||+||||+|||||||++|+| +++|+++++++.|++++|++.||+|++|.|||+|.|||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 998 5999999999999999999999976 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
|||||||+||||+|+||+|+||||||||||++++++|. +++.+..++||+|+||||++++++||+|++|++|+|+|+|+
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~-~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCC
Confidence 99999999999999999999999999999999999986 57888889999999999999999999999999999999999
Q ss_pred hHHHHHcCchHHHHHHHhh
Q 001528 802 YQELLLAGTAFEQLVNAHR 820 (1059)
Q Consensus 802 ~~eL~~~~~~~~~l~~~~~ 820 (1059)
|+||+++++.|+++++.+.
T Consensus 567 ~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 567 YAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred HHHHHhcchHHHHHHHHhh
Confidence 9999999999999987654
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9e-80 Score=746.26 Aligned_cols=547 Identities=23% Similarity=0.333 Sum_probs=453.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1059)
.++..++.+++.+.-..+..++..+++++.|++.+.++|.+-.. ........+++++.+..+++.++...-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788888888888999999999999999999876422 22233345555666666666666555555667889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001528 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIG---VLFGVVGLGALPG 423 (1059)
Q Consensus 347 ~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~---~L~~~lg~~~l~g 423 (1059)
.|+...+...+|+|.+++|...++++++||+++++ .|.++|.++... ...+.++.+..+++ +++..-++.+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 588999887642 33344455444433 3444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001528 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-Y 502 (1059)
Q Consensus 424 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~-~ 502 (1059)
++.+++.+.+..++.+.+++..++.++...++.+...|.++||++||..+-|+++..+.++.-.+..+.-.+...... .
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666666666677788889999999999999999999999999999999999999888887766665554333322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 001528 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1059)
Q Consensus 503 ~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1059)
+.+......+...++.++|..++.++.+|.|..+++.++...+..|+..+......+++++++.+|+.+.++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22222222233345566777777778999999999999999999999999999999999999999999999876543322
Q ss_pred hhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----
Q 001528 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1059)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---- 658 (1059)
......++..+.|+++|++|+|++++ +++|+|+|++|++||++||||+||||||||+++|+|.|+|++|+|.+||
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21223344567899999999998763 4899999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEcccccccccCHHHHhccCCCC-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 ---------~iayv~Q~pwi~~~TIreNIlfg~~~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
+|+||+|++.+|+|||||||.+|+|. ++|++.++++.++.++||+.+|.||+|.|||+|.||||||||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 59999999999999999999999995 67999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+||||+++||+|+||||||||||.++|+.|.+ .+....+|||+|+||||++++++||+|+||++|+|+|+|||+||++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~-~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQ-NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHH-HHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999875 57788899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHh
Q 001528 809 GTAFEQLVNAH 819 (1059)
Q Consensus 809 ~~~~~~l~~~~ 819 (1059)
+|.|++++..+
T Consensus 698 ~g~y~~l~~~q 708 (709)
T COG2274 698 GGLYARLYQQQ 708 (709)
T ss_pred cChHHHHHhcc
Confidence 99999987643
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-77 Score=733.48 Aligned_cols=547 Identities=23% Similarity=0.303 Sum_probs=407.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-hccCCCcchH-HHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLY---AFVN-YSNRGEENLQ-EGLSIVGCLIITKVVESFT--QRHCFFG 341 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~---~li~-~~~~~~~~~~-~g~~l~~~l~~~~~~~~~~--~~~~~~~ 341 (1059)
+.+++..++++....+..+...+.+...|.+-. .+++ |...+++... ....|+..+.+..++..+. .++|++
T Consensus 653 ~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f- 731 (1228)
T KOG0055|consen 653 WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF- 731 (1228)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345555555554444444555566667776643 3333 2222211111 1111332222222222222 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGL 418 (1059)
Q Consensus 342 ~~~~~~r~r~~l~~~iy~K~L~l~~~~~~--~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~ 418 (1059)
...|.++-..++...|+|.|+.....++ +++ |.+.+++++|+..+...+.. +..+.....-++.++++-+. .||
T Consensus 732 -~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~-~~W 808 (1228)
T KOG0055|consen 732 -GIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI-YGW 808 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3456666666666789999998776543 456 99999999999888765432 22222222222223222222 222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 419 -GALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1059)
Q Consensus 419 -~~l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1059)
.+++++++..++....+...+.+...+.+..+..++-.++..|++.|||+||.++.|++|.+...+.-++-.+...+..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555666788888889999999999999999999999999999998887665543322222222222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001528 498 LRKAYGTVIYWMSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1059)
Q Consensus 498 ~~~~~~~~~~~~~~-~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~ 576 (1059)
....+...+..... +..++..+++..++.++..++..+|.++..+..-..-+.+.....+.+..|+.|..++.+.++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 22222222222222 23344555677777778999999999888777666667777777888899999999999999865
Q ss_pred C-CCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEE
Q 001528 577 E-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1059)
Q Consensus 577 e-~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~ 655 (1059)
+ .++++......++..+.|+++|++|+||.+++.++|+|+||+|++||.+|+||||||||||.+++|.++|+|++|.|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4 443221111223446789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEcccccccccCHHHHhccCC-CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 656 v~g-------------~iayv~Q~pwi~~~TIreNIlfg~-~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
+|| ++|.|+|+|.|||+||||||+||. ..+++++.+|++.++.+++|.+||+||||.|||||.+||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 998 599999999999999999999994 469999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
||||||||||||+.+||+||||||+|||||+++|+ ++|++++....|||+|+|+||++++++||.|.|++||+|+|+||
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSEr-vVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESER-VVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH-HHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEeccc
Confidence 99999999999999999999999999999999998 46999999999999999999999999999999999999999999
Q ss_pred hHHHHHcCchHHHHHHHhh
Q 001528 802 YQELLLAGTAFEQLVNAHR 820 (1059)
Q Consensus 802 ~~eL~~~~~~~~~l~~~~~ 820 (1059)
|+||++++|.|.+|++.|.
T Consensus 1208 H~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1208 HDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred HHHHHhCCCchHHHhhhcc
Confidence 9999999999999987653
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-76 Score=738.63 Aligned_cols=544 Identities=22% Similarity=0.266 Sum_probs=428.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1059)
+++..++.+++.+....++.++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667778888888889999999999999999998654221 1122223333444444445554444455667888
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1059)
Q Consensus 347 ~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1059)
.++...++..+|+|.++++....++.++|+++++++ |++.+.++... +.......+.+++++++++..-++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888999999999997 78888875432 2122222222334444455444444554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1059)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1059)
.+++...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++..++..+...+..........
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666778888888889999999999999999999999999999887777666554444333322222222211
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q 001528 506 I-YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1059)
Q Consensus 506 ~-~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1059)
+ ..+..+...++.+++..++.++.+|.+.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-- 441 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--
Confidence 1 1122222233334444555558899999999999999999999999999999999999999999999765432111
Q ss_pred hccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------
Q 001528 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1059)
Q Consensus 585 ~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------ 658 (1059)
........+.|+++|++|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.++|
T Consensus 442 ~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 442 KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 11111223579999999999754 46899999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|+||||+|++|+|||||||.+|+|.++++++++++.|+++++++.+|+|++|.|||+|.||||||||||+||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCch
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~ 811 (1059)
||+|++|+|+||||||||||+++++++.+ .++.. ++|+|+||||++.++.||+|++|++|+|+|+|+|+||+++++.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~-~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~ 677 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSE-SLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGL 677 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 99999999999999999999999999875 46554 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 001528 812 FEQLVNA 818 (1059)
Q Consensus 812 ~~~l~~~ 818 (1059)
|+++++.
T Consensus 678 y~~l~~~ 684 (686)
T TIGR03797 678 FAQLARR 684 (686)
T ss_pred HHHHHHh
Confidence 9998764
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-76 Score=735.94 Aligned_cols=540 Identities=21% Similarity=0.240 Sum_probs=414.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r 350 (1059)
+.+.+++.+....++.++..++..+.|++...+++.+...... ......+..+++..++..++.....+...+.+.++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888889999999999999999876432211 111111111222222222222222222344566666
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 351 ~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
..++..+|+|.++.+....++.++|+++|++++|++.+.+... .+..++...++++.++++++..-+..+++.++.+++
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6677788999999999888899999999999999999987543 455566666666666666655444434433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1059)
...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++.++..++..+..++..............
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777888888888889999999999999999999998866665554443322222221111111111111
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccc
Q 001528 510 -SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1059)
Q Consensus 510 -~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1059)
.-....++.+++..++.++.+|.+.+++++.+...+..|+..++.....+.+++++.+|+.++++.++..++... ..+
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~ 472 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAP 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCC
Confidence 111112222333344445889999999999999999999999999999999999999999999976543221111 111
Q ss_pred cCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------
Q 001528 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1059)
Q Consensus 589 ~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------- 658 (1059)
.+..+.|+++|++|+|+.++++++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.++|
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 1234579999999999865457899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
+|+||||+|++|++||||||.+|.+ .++|+++++++.|+++++++.+|+|+||.+||+|.+|||||||||+||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 5999999999999999999999976 689999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 814 (1059)
++||+|+||||||||||++++++|.+ ....++||+|+||||+++++.||+|++|+||+|+|+|+|+||+++++.|++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHh
Confidence 99999999999999999999999875 234589999999999999999999999999999999999999999998887
Q ss_pred H
Q 001528 815 L 815 (1059)
Q Consensus 815 l 815 (1059)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 5
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.9e-76 Score=737.25 Aligned_cols=542 Identities=19% Similarity=0.234 Sum_probs=431.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
+..++.+++.+....+..++..++.++.|++++.+++....... ....+.+++++++..++..++.....+...+++.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777778888888899999999999999986532211 11122333344444455555555555567788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
+...++..+|+|.++++....++.++|+++|+++.| +.+.++.. .+.......+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999988 67776543 2333334444444555555554444445444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-I 506 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~ 506 (1059)
++...+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..+++.+...+.......... .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777788888888888899999999999999999999999999998888777766554433322222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh---
Q 001528 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1059)
Q Consensus 507 ~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~--- 583 (1059)
.....+...++.+++..++.++.+|.+.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 22222222233344444444588999999999999999999999999999999999999999999997654322111
Q ss_pred -h-hccc-cCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--
Q 001528 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1059)
Q Consensus 584 -~-~~~~-~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-- 658 (1059)
. .... +...+.|+++|++|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 1224579999999999754 46899999999999999999999999999999999999999999999988
Q ss_pred -----------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 -----------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
+|+||||+|++|+|||||||.+++| .++++++++++.|+++++++.+|+|++|.|||+|.||||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 5999999999999999999999875 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||+||||++++|+|+||||||||||++++++|.+. +.. +++|+|+||||++.++.||+|++|++|+|+++|+|+||+
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~-l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDN-LRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHH-HHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999998754 544 589999999999999999999999999999999999999
Q ss_pred HcCchHHHHH
Q 001528 807 LAGTAFEQLV 816 (1059)
Q Consensus 807 ~~~~~~~~l~ 816 (1059)
++++.|++++
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 9999999875
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.8e-74 Score=753.98 Aligned_cols=765 Identities=14% Similarity=0.134 Sum_probs=516.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1059)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~ 352 (1059)
+.+++.++++.++.++..++..+.|+++..+++...... .... ++..+++..++..++.....+...+++.++...
T Consensus 56 ~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 131 (1466)
T PTZ00265 56 ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKT 131 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777888888888887543211 1111 111222222333333333344556777888888
Q ss_pred HHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG 431 (1059)
Q Consensus 353 l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~ 431 (1059)
++..+|+|.++++...+++.++|++.+.++.|++.+.+.+. .+..+...++.++.++++++..-...+++.++++.+++
T Consensus 132 lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~ 211 (1466)
T PTZ00265 132 LKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIY 211 (1466)
T ss_pred HHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88889999999999888888999999999999999887543 34455555555666655555443334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001528 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMS 510 (1059)
Q Consensus 432 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~~~~ 510 (1059)
.+...+.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+...+...+......+ ..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 291 (1466)
T PTZ00265 212 ICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777788889999999999999999999999988877765444333322222222222 11222222
Q ss_pred HHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCch
Q 001528 511 PTIISSVIFLGCALTGS--------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1059)
Q Consensus 511 ~~~v~~~~f~~~~l~~~--------~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1059)
.....++.+++..++.+ +.++++.+++++........++..+...+..+.++.+|.+||.+.++.++..++.
T Consensus 292 ~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~ 371 (1466)
T PTZ00265 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN 371 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22223333444433332 2578888777655444444455566667889999999999999999754322111
Q ss_pred hhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc-C---
Q 001528 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G--- 658 (1059)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~-g--- 658 (1059)
......+ ....|+++|++|+|+.+++.++|+|+||+|++||++|||||+|||||||+++|+|+|+|++|+|.++ |
T Consensus 372 ~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 372 DDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred CCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 1111111 1236999999999986544579999999999999999999999999999999999999999999994 4
Q ss_pred ----------eEEEEcccccccccCHHHHhccCCC---------------------------------------------
Q 001528 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP--------------------------------------------- 683 (1059)
Q Consensus 659 ----------~iayv~Q~pwi~~~TIreNIlfg~~--------------------------------------------- 683 (1059)
+|+||+|+|.+|++||+|||.+|.+
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 3999999999999999999999741
Q ss_pred -------------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCccc
Q 001528 684 -------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1059)
Q Consensus 684 -------------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAl 750 (1059)
.++++++++++.++++++++.||+|++|.+|++|.+|||||||||+||||++++|+|+|||||||||
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCC----------------------------------
Q 001528 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGG---------------------------------- 794 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G---------------------------------- 794 (1059)
|+++++.|. +.+.... +|+|+|+||||+++++.||+|++|++|
T Consensus 611 D~~se~~i~-~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1466)
T PTZ00265 611 DNKSEYLVQ-KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNN 689 (1466)
T ss_pred CHHHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccc
Confidence 999999874 6777665 589999999999999999999999986
Q ss_pred -------------eEEEecChHHHHH-cCchHHHHHHHhhhhcccCC-C-CCCCCCCCcccccccc-CCCCCC-C----C
Q 001528 795 -------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGR-TARPEE-P----N 852 (1059)
Q Consensus 795 -------------~I~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~-~----~ 852 (1059)
+|+|+|||+||++ .+|.|+.+++.+........ + .+.....+.+..+... ....++ . .
T Consensus 690 ~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1466)
T PTZ00265 690 NNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKH 769 (1466)
T ss_pred ccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 68999999977643211100 0 0000000000000000 000000 0 0
Q ss_pred CCCCCC-CCcc----cc-cccccCCCCchhhhh--hcCcc--cHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHhHHHH
Q 001528 853 GIYPRK-ESSE----GE-ISVKGLTQLTEDEEM--EIGDV--GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYW 922 (1059)
Q Consensus 853 ~~~~~~-~~~~----~~-~~~~~~~~l~~~E~~--~~G~V--~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~W 922 (1059)
...+.. .... .+ .+.....+...-++. ..-.. .+..+++|++..... +++.+++.++..++.....+-
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 847 (1466)
T PTZ00265 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFALL 847 (1466)
T ss_pred cccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 00 000000000000000 00001 122223333211111 111222222223333333333
Q ss_pred Hhhhcc----CCc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--cChhHH
Q 001528 923 LAYAIQ----IPK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRI 994 (1059)
Q Consensus 923 l~~w~~----~~~--~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~--tP~GrI 994 (1059)
++.+.+ ... .....|..++++++++..++.+++.++....+.+...++..++++++++.|++|||. +++|++
T Consensus 848 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l 927 (1466)
T PTZ00265 848 YAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLL 927 (1466)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHH
Confidence 333322 111 112345666777777788888888888899999999999999999999999999996 889999
Q ss_pred HhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001528 995 LTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1059)
Q Consensus 995 lNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~~ipl~ 1045 (1059)
++|+++|++.+...+...+..++..++.+++.++++.+..|.+.++++|+.
T Consensus 928 ~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~ 978 (1466)
T PTZ00265 928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988999999999999888888888888876655543
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.1e-75 Score=728.35 Aligned_cols=536 Identities=21% Similarity=0.273 Sum_probs=426.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1059)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1059)
++...+.+++.+....++.++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888999999999999999998754221 12222233333333444444444444455678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1059)
Q Consensus 348 r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1059)
++...++..+|+|.++++... .+.++|++++++ +|++.+.++... +.......+.+++.+++++..-++.+++.++.
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 294 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999877 678999999999 799999886542 22222222233344444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI 506 (1059)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~ 506 (1059)
+++...+...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (694)
T TIGR03375 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677888888899999999999999999999999999999999988888777766555444333322222211
Q ss_pred HH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhh
Q 001528 507 YW-MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1059)
Q Consensus 507 ~~-~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1059)
.. ...+...++.+++..++.++.+|.+.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++.++.....
T Consensus 375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 454 (694)
T TIGR03375 375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 11 11122222333444444457899999999999999999999999999999999999999999999865432211111
Q ss_pred ccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------
Q 001528 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1059)
Q Consensus 586 ~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------- 658 (1059)
...+...+.|+++|++|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.++|
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 1111234579999999999753 46799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|+||||+|++|+|||||||.+|+| .++++++++++.|+++++++.||+|++|.|||+|.||||||||||+||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++++|+|+||||||||||++++++|. +.+.+..+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFK-DRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999986 568888889999999999999999999999999999999999999864
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.6e-74 Score=722.01 Aligned_cols=541 Identities=24% Similarity=0.284 Sum_probs=419.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r 350 (1059)
..+.+++.+....++.++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777788888899999999999999998653221 11122223333333444444444444455677888999
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 351 ~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
..++..+|+|.++++....++.++|+++++++ |.+++.++... +.......+.+++.+++++..-++.+++.++.+++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l 307 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPV 307 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999888999999999998 89888875432 22222222333333344444434434443334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YW 508 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~ 508 (1059)
...+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........+ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (708)
T TIGR01193 308 YAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888999999999999999999999999999998887777665444333222221111111111 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccc
Q 001528 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1059)
Q Consensus 509 ~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1059)
...+...++.+++..++.++.+|.+.++++..+...+..|+..+...+..+.+++++.+|+.++++.++..++.......
T Consensus 388 ~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~ 467 (708)
T TIGR01193 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTEL 467 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCC
Confidence 11112222333444444458999999999999999999999999999999999999999999999765432211111111
Q ss_pred cCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------
Q 001528 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1059)
Q Consensus 589 ~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------- 658 (1059)
....+.|+++|++|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|
T Consensus 468 ~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 468 NNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred CCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHH
Confidence 223457999999999964 35799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEcccccccccCHHHHhccC-CC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 659 ---SIAYVSQTSWIQSGSIRDNILYG-KP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~TIreNIlfg-~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
+|+||||+|++|+|||||||.+| +| .++++++++++.|+++++++.+|+|++|.|||+|.+|||||||||+||||
T Consensus 546 lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999998 34 78999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHH
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~ 813 (1059)
++++|+|+|||||||+||+++++++.+ .+.. ++++|+|+||||++.++.||+|++|++|+++|.|+|+||++++|.|+
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te~~i~~-~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~ 703 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVN-NLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYA 703 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHH-HHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHH
Confidence 999999999999999999999999864 5655 47999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 001528 814 QLVN 817 (1059)
Q Consensus 814 ~l~~ 817 (1059)
++++
T Consensus 704 ~l~~ 707 (708)
T TIGR01193 704 SLIH 707 (708)
T ss_pred HHhh
Confidence 8864
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.8e-74 Score=705.99 Aligned_cols=545 Identities=17% Similarity=0.223 Sum_probs=419.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1059)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (1059)
.+++.+++.++...++.++..+...+.|.+++.+++....+... .....++.++++..++..+......+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777777788888888888765432211 11111122222233333333333334456778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1059)
Q Consensus 350 r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1059)
...++..+|+|.++++....++.+.|++++++++|++++.+... .+..++..++.+++.+++++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988999999999999999999987543 34445555666666666655554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001528 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIY 507 (1059)
Q Consensus 429 ~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~ 507 (1059)
+...+...+.+++++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+....... .....
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677778888888888889999999999999999999999877776665444333322222211111 11111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcc
Q 001528 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1059)
Q Consensus 508 ~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1059)
.+..+...++.+++...+.++.++++.+.++++++..+..|+..+...+..+.+++.+.+|+.++++.++.++... ..
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~ 334 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cC
Confidence 1122222222333333333478999999888888888999999999999999999999999999997654322111 11
Q ss_pred ccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------
Q 001528 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1059)
Q Consensus 588 ~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------- 658 (1059)
.+...+.|+++|++|+|+++ ++++|+|+|++|++||++||+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 11223469999999999753 46899999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
.|+||||+|++|++||||||.+|++ +++++++++++.|+++++++.||+|++|.+||+|.+|||||||||+|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4999999999999999999999864 7999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchH
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 812 (1059)
|+|++|+|+||||||||||++++++++ +.+....+++|+|+||||++.++.||+|++|++|+|+|.|+|+||+++++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~-~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 999999999999999999999999986 5677777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 001528 813 EQLVNAH 819 (1059)
Q Consensus 813 ~~l~~~~ 819 (1059)
++++..+
T Consensus 573 ~~l~~~~ 579 (582)
T PRK11176 573 AQLHKMQ 579 (582)
T ss_pred HHHHHHH
Confidence 9998654
No 19
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.4e-74 Score=701.11 Aligned_cols=537 Identities=24% Similarity=0.326 Sum_probs=410.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1059)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~ 354 (1059)
++ .+....++.++..++....|.++..+++..............+.+++ .++..+......+...+.+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL---ALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 77777888888889999999999988876541111111111111122 222223333333444555688888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWS-LALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1059)
Q Consensus 355 ~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~-~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l 433 (1059)
..+|+|.++++....+++++|++++++++|++.+............ .++.++..+++++..-...++..+...+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8999999999998889999999999999999999887654322222 233333333333322121222222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 001528 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWMSPT 512 (1059)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~-~~~~~~~~~~~~~~~~~ 512 (1059)
...+.++.++..++..+..++..+.+.|.++|++++|.|+.|+...++.++..+...+...+ ................+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556777778888888999999999999999999999986655544433322222111 11111111222222333
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCC
Q 001528 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1059)
Q Consensus 513 ~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1059)
....+.+.+...+..+.++.+.+.+++.+...+..|+..+......+.++..+.+|+.++++.++.-.+.... .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~ 326 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTI 326 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCC
Confidence 3334444444444456799999999999999999999999999999999999999999999874431111111 12234
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
+.|+++|++|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+|| +
T Consensus 327 ~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 327 GSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 56999999999975 35899999999999999999999999999999999999999999999988 5
Q ss_pred EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
||||||+|++|++||+|||.+|+| .++|+++++++.++++++++.+|+|+||.|||+|.+|||||||||+||||+++||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHH
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~ 818 (1059)
+|+||||||||||+++|+.|. +.+....++||+|+|+||++++++||+|+||++|+|+|.|+|+||++++|.|+++++.
T Consensus 485 ~ILILDEaTSalD~~tE~~I~-~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 485 PILILDEATSALDTETEALIQ-DALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred CEEEEeccccccCHHhHHHHH-HHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 999999999999999999875 5677777999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 001528 819 HR 820 (1059)
Q Consensus 819 ~~ 820 (1059)
+.
T Consensus 564 ~~ 565 (567)
T COG1132 564 QG 565 (567)
T ss_pred hh
Confidence 54
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-73 Score=699.60 Aligned_cols=544 Identities=18% Similarity=0.256 Sum_probs=416.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
.+.+.+++.++...++.++..++..+.|+++..+++..... ..+......+++++++..++..+......+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777778888888999999999999999865322 11111111222223333344444444444556778888
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
+...++..+|+|.++.+....++.++|+++|++++|++++.+.... +..+....+.++.++++++..-++..++.++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~ 175 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888999999999999999999876443 223333333333333333332222223322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--GTV 505 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~~~ 505 (1059)
.+.+.+.....++.++..++..+..++..+...|.++|+++||.|+.|+.+.++..+..++..+...+....... ...
T Consensus 176 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (592)
T PRK10790 176 PAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344556666667777777788888899999999999999999988888777655433321111111111 111
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q 001528 506 IYWMSPTIIS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1059)
Q Consensus 506 ~~~~~~~~v~-~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1059)
......+++. ++.+.++ . ..+.++.+.+++++.++..+..|+..++.....+.++..+.+|+.++++.++.+... .
T Consensus 256 ~~~~~~~~~~~~~~~~~~-~-~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~ 332 (592)
T PRK10790 256 LSLFSALILCGLLMLFGF-S-ASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C
Confidence 1111111111 1122233 2 347899999999999999999999999999999999999999999999754432111 1
Q ss_pred hccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------
Q 001528 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1059)
Q Consensus 585 ~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------ 658 (1059)
. .....+.|+++|++|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|
T Consensus 333 ~--~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 333 D--RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred c--cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC
Confidence 1 1122356999999999974 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|+||||+|++|++||||||.+|++.++++++++++.++++++++.||+|+||.|||+|.+|||||||||+||
T Consensus 409 ~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred CHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCch
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~ 811 (1059)
||+|+||+|+||||||||||++++++|. +.+....++||+|+||||++.++.||+|++|++|++++.|+|+||+++++.
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~-~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~ 567 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQ-QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGR 567 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCH
Confidence 9999999999999999999999999985 567777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 001528 812 FEQLVNAHRD 821 (1059)
Q Consensus 812 ~~~l~~~~~~ 821 (1059)
|+++++.+.+
T Consensus 568 y~~l~~~~~~ 577 (592)
T PRK10790 568 YWQMYQLQLA 577 (592)
T ss_pred HHHHHHHHhh
Confidence 9999876543
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.9e-73 Score=695.97 Aligned_cols=545 Identities=19% Similarity=0.264 Sum_probs=432.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1059)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (1059)
.+.+.+++.+++..++.++..++....|.++..+++...... .....+.+++++++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888899999999999988887533221 1111122222233333444444444445567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1059)
Q Consensus 350 r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1059)
...++..+|+|.++.+....++.+.|+++++++.|++++.++.. .+..++...+.+++++++++..-++.+++.++.++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888999999999999888889999999999999999987653 34455555566666666666554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001528 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-Y 507 (1059)
Q Consensus 429 ~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~ 507 (1059)
+.+.+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+..........+ .
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667788888888999999999999999999999999999999887777766555444333222222221111 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhcc
Q 001528 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1059)
Q Consensus 508 ~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1059)
....+...++.+++..++.++.+|++.+++++.++..+..|+..+......+.+++++.+|+.++++.++..+... .+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~ 323 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Confidence 1122222333334444444589999999999999999999999999999999999999999999997654322111 11
Q ss_pred ccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------
Q 001528 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1059)
Q Consensus 588 ~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------- 658 (1059)
.....+.|+++|++|+|++. ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11224569999999999754 46899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|+||||+|++|+|||||||.+|++ .++++++++++.|+++++++.||+|+||+|||+|.+|||||||||+|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 4999999999999999999999964 8999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchH
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 812 (1059)
|+|++|+|+|||||||+||++++++|. +.+....++||+|+|||+.+.++.||+|++|++|++++.|+|+|++++++.|
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~-~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQ-AALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 999999999999999999999999985 5677777899999999999999999999999999999999999999988889
Q ss_pred HHHHHHh
Q 001528 813 EQLVNAH 819 (1059)
Q Consensus 813 ~~l~~~~ 819 (1059)
+++.+.+
T Consensus 562 ~~~~~~~ 568 (571)
T TIGR02203 562 AQLHNMQ 568 (571)
T ss_pred HHHHHHh
Confidence 8876543
No 22
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.5e-73 Score=690.00 Aligned_cols=542 Identities=21% Similarity=0.247 Sum_probs=412.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1059)
+.+.+++.+++..++.++..++....|.+++.+++... .+.. ........++++++..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888889999999999999988532 2110 00111111222223333444444344455678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1059)
Q Consensus 348 r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1059)
++...++..+|+|.++++....++.++|++++++++|++++.++... +..+....+.++.++++++..-...+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999986543 34444444555555554443333322222111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001528 427 FLICG-LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GT 504 (1059)
Q Consensus 427 ~~~~~-~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~ 504 (1059)
+.+.. .+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++..+...+....... ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 22344566667777888888888889999999999999999999888777766554433322222211221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q 001528 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1059)
Q Consensus 505 ~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~-l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 583 (1059)
....+....+.++.+++..++ ++.++.+..++++.+... ...|+..++..+..+.++.++.+|+.++++.++..+++.
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 122222222333334444444 367888887776655433 356888899999999999999999999997654211111
Q ss_pred hhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----
Q 001528 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1059)
Q Consensus 584 ~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----- 658 (1059)
. .......+.|+++|++|+|+++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 1111223569999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 --------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.|+||||+|++|++||+|||.+|+| .++++++++++.++++++++. |+|+||.|||+|.+|||||||||+
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 3999999999999999999999987 689999999999999999999 999999999999999999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
||||++++|+|+|||||||+||++++++|. +.+....++||+|+||||++.++.||+|++|++|+++|.|+|+||++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~-~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 999999999999999999999999999875 5677777899999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 001528 810 TAFEQLVN 817 (1059)
Q Consensus 810 ~~~~~l~~ 817 (1059)
|.|+++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 99999875
No 23
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-72 Score=644.63 Aligned_cols=529 Identities=23% Similarity=0.312 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1059)
Q Consensus 282 ~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~ 361 (1059)
..++.++..++...+-.++-..++-+-..+. ....+.++++++++.++.+++....-...++.+.++|..++..+++|.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666555543322221 223344555666666777776666666788999999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTW---SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1059)
Q Consensus 362 L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~---~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~ 437 (1059)
.++++...++.++|++.++++.-++.+..+.. |+.... ..|+-++++++...|.-+...+ +.+.++....+.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIll---it~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILL---ITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHH
Confidence 99999888899999999999999998877543 232222 2233333333333333332222 2222222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE----EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1059)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE----~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~~ 513 (1059)
++..++..+++++....-....-+.|+|+.++|.|+.. +++.+.-++.|+.-++.+|.......+.-++...+ +
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls--i 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS--I 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 66777777888887777778888999999999999875 45556667788888888776544333333222221 1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhh-ccccCCC
Q 001528 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1059)
Q Consensus 514 v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1059)
..++.+++..+.+.++++-...+.++.+---+..|++.+...++.-.++..+.+++..|++.++.+.+.... ....++.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222344555555535899999999988888888999999999999999999999999999877654322211 1111223
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
..++.+|++|.|+++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 345556999999864 3899999999999999999999999999999999999999999999997 5
Q ss_pred EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
++||||+|+||+|||||||++|++ .++|++.+|++.++|.++++. |+|.||+|||+|.+|||||+||++||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999 689999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHH
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~ 818 (1059)
++||||||||+||++||+.|. +.+.++.++||+|+||||++.+.+||+|+|||+|+++|+|+|+||.+++|.|++++++
T Consensus 476 ~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 999999999999999999874 6788899999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 001528 819 HR 820 (1059)
Q Consensus 819 ~~ 820 (1059)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 64
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.3e-72 Score=687.16 Aligned_cols=548 Identities=20% Similarity=0.265 Sum_probs=420.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
+.+.+.+++.+.+..++.++..++.++.|+++..+++..-... .......+++++++..++..+......+...+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777788888899999999999999998632111 111111122222222233333333444556788889
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
+...++..+|+|.++++....++.+.|++++++++|++.+.++.. .+..++...+.++.++++++...++.+++.++.+
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999888888999999999999999987643 2334344444444444444433333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVI 506 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~-~~~~~ 506 (1059)
++...+...+.+.+++..++.++..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+...... .....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (576)
T TIGR02204 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIV 248 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334567777888888888889999999999999999999999998777776655544333222221111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhc
Q 001528 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1059)
Q Consensus 507 ~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1059)
..+......++.+++...+.++.+|.+.++++..+...+..|+..++..+..+.+++++++|+.++++.++..+......
T Consensus 249 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 328 (576)
T TIGR02204 249 IVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK 328 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc
Confidence 11111222233333344344478999999999999999999999999999999999999999999997543211111111
Q ss_pred -cccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------
Q 001528 587 -SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1059)
Q Consensus 587 -~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------- 658 (1059)
...+..+.|+++|++|+|++++++++|+|+||+++|||+++|+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~ 408 (576)
T TIGR02204 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD 408 (576)
T ss_pred cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 111123469999999999764346899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
.++||||+|++|+|||||||.+|+| .++++++++++.+++.++++.+|+|++|.|||+|.+|||||||||+||
T Consensus 409 ~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 409 PAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred HHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999987 588999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCch
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~ 811 (1059)
||+|++|+|+|||||||+||.++++.+. +.+....+++|+|+||||++.++.+|+|++|++|++++.|+|+|++++++.
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~-~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~ 567 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQ-QALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCCh
Confidence 9999999999999999999999999875 567777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 001528 812 FEQLVNA 818 (1059)
Q Consensus 812 ~~~l~~~ 818 (1059)
|+++++.
T Consensus 568 ~~~l~~~ 574 (576)
T TIGR02204 568 YARLARL 574 (576)
T ss_pred HHHHHhh
Confidence 9988753
No 25
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-71 Score=682.47 Aligned_cols=539 Identities=19% Similarity=0.261 Sum_probs=410.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r 350 (1059)
+.+.+++.+....++.++..++.++.|+++..+++.+..+. .... +++.+++..++..+......+...+...+++
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888888999999999999998664321 2111 1111111112222222222334567778888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 351 ~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
..++..+|+|.++++....++.+.|+++++++.|++.+.+... .+.......+..++.+++++..-.+.+++.++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999888899999999999999998875432 222222222222222222333222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTV 505 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~ 505 (1059)
...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+.-+ .+.+..+.........
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 246 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN-- 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344556677778888888888899999999999999999999999876655544333 3322222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhh
Q 001528 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1059)
Q Consensus 506 ~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1059)
.....+...++.+++..++.++.+|.+.+++++.++..+..|+..+...+..+.++..+.+|+.++++.++..++....
T Consensus 247 -~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 247 -RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 1122222223333333444457899999999999999999999999999999999999999999998754322111111
Q ss_pred ccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------
Q 001528 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1059)
Q Consensus 586 ~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------- 658 (1059)
.......+.|+++|++|+|+++ +++|+|+|++++|||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 326 IDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred CCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 1111223469999999999742 4799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
.|+||||+|++|+|||||||.+|+| .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999976 689999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCch
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~ 811 (1059)
||++++|+|+|||||||+||+++++.|. +.+....++||+|+||||++.++.||+|++|+||++++.|+|+||+++++.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~-~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 562 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVK-AALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGR 562 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCCh
Confidence 9999999999999999999999999986 556666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 001528 812 FEQLVNAH 819 (1059)
Q Consensus 812 ~~~l~~~~ 819 (1059)
|.++++.+
T Consensus 563 y~~l~~~~ 570 (588)
T PRK13657 563 FAALLRAQ 570 (588)
T ss_pred HHHHHHHh
Confidence 99988754
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-71 Score=693.46 Aligned_cols=545 Identities=21% Similarity=0.237 Sum_probs=426.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
+..++.+++.+....+..++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (694)
T TIGR01846 131 IPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSR 209 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777888888889999999999999998653221 122222333334444444555544445566778889
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
+...++..+|+|.++++....++.++|++++++ +|++.+.++.. .+.......+.+++.+++++..-++.+++.++.+
T Consensus 210 ~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 288 (694)
T TIGR01846 210 IDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSL 288 (694)
T ss_pred HHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 69999988643 2222222223333334444444444444444434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VI 506 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~ 506 (1059)
++...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+......... ..
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR01846 289 VCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAI 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455567777788888888888999999999999999999999988877776655444333222222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhc
Q 001528 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1059)
Q Consensus 507 ~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1059)
.....+...++.+++..++.++.+|.+.+.++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. ...
T Consensus 369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~ 447 (694)
T TIGR01846 369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLA 447 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCC
Confidence 1122222233344444555457899999999999999999999999999999999999999999999765432211 111
Q ss_pred cccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------
Q 001528 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1059)
Q Consensus 587 ~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------- 658 (1059)
..+...+.|+++|++|+|+++ ++++|+|+||+|++||++||+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH
Confidence 112234579999999999754 35799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|+||||+|++|++||||||.+++| .++++++++++.++++++++.||+|++|.|||+|.+|||||||||+|||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 4999999999999999999999876 6899999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchH
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~ 812 (1059)
|++++|+|+|||||||+||+++++++. +.+....+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y 685 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIM-RNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHH-HHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence 999999999999999999999999986 5677777899999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 001528 813 EQLVNA 818 (1059)
Q Consensus 813 ~~l~~~ 818 (1059)
+++++.
T Consensus 686 ~~l~~~ 691 (694)
T TIGR01846 686 ARLWQQ 691 (694)
T ss_pred HHHHHh
Confidence 999764
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-71 Score=675.26 Aligned_cols=505 Identities=19% Similarity=0.244 Sum_probs=377.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r 350 (1059)
+.+.+++.++...++.++..++..+.|++++.+++........... +.++.++++..++..+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777888888889999999999998865322211111 111111112223333333333344567788888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 351 ~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
..++..+|+|.++++....++.++|+++|++++|++++.+.... +..+....+.+++++++++..-+..+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999886543 33334444444444444443333333332222222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 430 CGLLNVPF-AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1059)
Q Consensus 430 ~~~l~~~~-~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1059)
+..+...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++.++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222122 33344555666777888899999999999999999999998888877665544433332222222212111
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhh--
Q 001528 509 -MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-- 585 (1059)
Q Consensus 509 -~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-- 585 (1059)
...+...++.+.+..++.++.++.+.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++....
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 11122222333344444457899999999999999999999999999999999999999999999765432111100
Q ss_pred ccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------
Q 001528 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1059)
Q Consensus 586 ~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------- 658 (1059)
.......+.|+++|++|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 0011123469999999999753 4699999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+||||||+|++|+|||||||.+|+| .++|+++++++.|+++++++.||+|+||.|||+|.+|||||||||+|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 7999999999999999999999987 6999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l 779 (1059)
|+++||+|+||||||||||+++|+.|. +.+.+..++||+|+||||+
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~-~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELL-EDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999986 4567778999999999995
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-71 Score=729.56 Aligned_cols=543 Identities=19% Similarity=0.217 Sum_probs=395.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1059)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~ 352 (1059)
+.+++.++++.++.++..++..+.|+++..+++..-........+..+++.+++..++..++.....+...+++.++...
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777788888888888899988888743221111111212222222233333333333334456788888888
Q ss_pred HHHHHHHHHhcCCcccCCC--CCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 353 LMVAVYQKQLKLSSLGRKK--HSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 353 l~~~iy~K~L~l~~~~~~~--~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
++..+|+|.++++...+++ +++|++++++++|++.+.++... +..+...++.+++++++++..-.. .+++++++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~---l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPI---VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 8899999999999987764 88999999999999999875432 333333344444444333322221 11211222
Q ss_pred HHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 001528 430 CGLLNVPFAKILQKCQ-SEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~-~~~-----------------~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1059)
...+...+.++.+... ++. .+..++....++|.++||++||.|+.|+.+.++.++.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2222222233222111 111 1112344678899999999999999999988877765544333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 492 WLSEAQLRKAY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1059)
Q Consensus 492 ~l~~~~~~~~~-~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~ 570 (1059)
..++.....+. ..+......+...++.+++..++..+.++.+.++.++.++.....++..+...+..+.+++++.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222121 11111112222334444555556568999999988877665555678888999999999999999999
Q ss_pred HHhcCCC-CCCchhhhcc---ccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC
Q 001528 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1059)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe 646 (1059)
++++.++ .+..+..... .....+.|+|+|++|+|+.+++.++|+|+||+|++|+++||||+||||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997543 2111111111 11233579999999999865556899999999999999999999999999999999999
Q ss_pred CCC------------------------------------------------------CccEEEEcC-------------e
Q 001528 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1059)
Q Consensus 647 ~~~------------------------------------------------------~~G~I~v~g-------------~ 659 (1059)
|+| .+|+|.++| +
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999998 4
Q ss_pred EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
||||||+|+||+|||||||.+|+| .+++++++|++.++++++|+.||+|+||.|||+|.+||||||||||||||+++||
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999976 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccccccCCeEEEEeC----CeEE-EecChHHHHH-cCc
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGT 810 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~aD~Iivl~~----G~I~-e~Gt~~eL~~-~~~ 810 (1059)
+||||||||||||+++|+.| ++.+... .++||+|+||||++++++||+|+||++ |+++ |+|||+||++ ++|
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g 1456 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456 (1466)
T ss_pred CEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCC
Confidence 99999999999999999987 4677776 379999999999999999999999999 9955 8999999998 589
Q ss_pred hHHHHHHHh
Q 001528 811 AFEQLVNAH 819 (1059)
Q Consensus 811 ~~~~l~~~~ 819 (1059)
.|+++++.+
T Consensus 1457 ~Y~~l~~~~ 1465 (1466)
T PTZ00265 1457 VYKKYVKLA 1465 (1466)
T ss_pred hHHHHHhhc
Confidence 999998653
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-71 Score=675.60 Aligned_cols=530 Identities=22% Similarity=0.274 Sum_probs=405.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 001528 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1059)
Q Consensus 287 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~ 366 (1059)
++..++..+.|++++.+++............+.+++++++..++..++.....+...+.+.++...++..+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45566677889999999986543221112222333333333344444433333445667888888999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 367 LGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVPFAKILQKC 444 (1059)
Q Consensus 367 ~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~-~~l~gl~~~~~~~~l~~~~~~~~~~~ 444 (1059)
...++.++|++++++++|++++..... .+..++..++..++++++++..++| .+++.++++++...+...+.++.++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999976542 2344444444444444433323333 23333333333334445566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001528 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYWMSPTIISSVIFLGCA 523 (1059)
Q Consensus 445 ~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~-~~~~~~~~~~~~v~~~~f~~~~ 523 (1059)
.++..+..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+...... ..............++.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888999999999999999999988766665543332221111111111 1111111111112222333444
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEEEeeeEe
Q 001528 524 LTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFS 603 (1059)
Q Consensus 524 l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~sf~ 603 (1059)
++.++.+|.+.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..++.. .+.+...+.|+++|++|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEEE
Confidence 444588999999999999999999999999999999999999999999997643221111 111122356999999999
Q ss_pred eCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEccccccc
Q 001528 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQ 670 (1059)
Q Consensus 604 ~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi~ 670 (1059)
|+.+ +.++|+|+||+++||++++|+||+|||||||+++|+|+++|++|+|.++| .++||||+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 45799999999999999999999999999999999999999999999987 489999999999
Q ss_pred ccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcc
Q 001528 671 SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 671 ~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SA 749 (1059)
++||||||.+|++ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 9999999999975 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHHhh
Q 001528 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1059)
Q Consensus 750 lD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~~~ 820 (1059)
||+++++++.+ .++...+++|+|+||||++.++.||+|++|++|+++++|+|+|++++++.|+++++.+.
T Consensus 482 LD~~~~~~i~~-~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 482 VDGRTEHQILH-NLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred CCHHHHHHHHH-HHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999864 57777789999999999999999999999999999999999999999999999887553
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-69 Score=662.56 Aligned_cols=542 Identities=18% Similarity=0.227 Sum_probs=413.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1059)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r 350 (1059)
+++.+++.++...++.++..++..+.|++++.+++...... ... .+++..++..++..+..........++..+++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVL---PTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888999999999999999998654322 111 11111111222233322233345667888899
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 351 ~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
..++..+|+|.++++....++.++|+++++++.|++.+.++.. .+.......+.+++.+++++..-...+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988899999999999999999876543 233333344444443333433322223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYW 508 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~ 508 (1059)
...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.++.++..++-.+...+........ .....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777788888999999999999999999988776666554433222111111111111 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccc
Q 001528 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1059)
Q Consensus 509 ~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1059)
...+...++.+++..++.++.++.+.+++++.+...+..|+..++..+..+.+++.+.+|+.++++.++...+.......
T Consensus 249 ~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 328 (585)
T TIGR01192 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL 328 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC
Confidence 11222223333444444457899999999999999999999999999999999999999999998754322111111111
Q ss_pred cCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------
Q 001528 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1059)
Q Consensus 589 ~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------- 658 (1059)
+...+.++++|++|+|+++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|.+|+|.++|
T Consensus 329 ~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH
Confidence 1223469999999999743 4689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
.++||||+|++|++||||||.+|.| .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999976 688999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 814 (1059)
+++|+|+|||||||+||+++++.+. +.+....+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~-~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVK-NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 9999999999999999999999875 667777789999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 001528 815 LVNAH 819 (1059)
Q Consensus 815 l~~~~ 819 (1059)
+++.+
T Consensus 566 l~~~~ 570 (585)
T TIGR01192 566 LLRRS 570 (585)
T ss_pred HHHhC
Confidence 98654
No 31
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-69 Score=657.16 Aligned_cols=521 Identities=21% Similarity=0.221 Sum_probs=399.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1059)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~ 354 (1059)
+++.++...++.++..++..+.|++++.+++...... +....+.+++++++..++..++.....+...+.+.++...++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888888999999999999998543211 112222333344444455555555555667788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432 (1059)
Q Consensus 355 ~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~--~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~ 432 (1059)
..+|+|.++++.. ..++..+.+++|++++.++... +..+...++.++.. ++++..-++.+++.++.+++...
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999873 2355678889999999876432 23333333333322 23333322222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001528 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP- 511 (1059)
Q Consensus 433 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~- 511 (1059)
+.....+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+..........+.....
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777888889999999999999999999999999998888777665544433332222222212111111
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCC
Q 001528 512 TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591 (1059)
Q Consensus 512 ~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 591 (1059)
+...++.+++..++.++.+|++.+++++.++..+..|+..++.....+.+++++.+|+.++++.++..++. ...+..
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~ 313 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCC
Confidence 11222233344444458899999999999999999999999999999999999999999999765432211 111122
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
++.++++|++|+|+++ ++++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 3569999999999743 35799999999999999999999999999999999999999999999987
Q ss_pred eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
.++||||+|++|++|+||||.++.+ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 4999999999999999999987665 799999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHH
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|+|+|||||||+||+++++++. +++.... +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALA-NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHH-HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999876 5676654 6899999999999999999999999999999999999975
No 32
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-72 Score=612.75 Aligned_cols=528 Identities=20% Similarity=0.295 Sum_probs=390.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVE--SFTQRHCFFGSRRSGMRMRSALMVAVYQK 360 (1059)
Q Consensus 284 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~r~r~~l~~~iy~K 360 (1059)
++..+.-++....|.+.+.+++-+..+... .+..+.++++-++....+ .+.++.-.+..-++..-...++-..+|+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 333445566777899888888876533222 222333333333221110 11221111111122333334455678999
Q ss_pred HhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001528 361 QLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF---LICGLLNVP 436 (1059)
Q Consensus 361 ~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~---~~~~~l~~~ 436 (1059)
...+|....-.+.+||+...|..-.+.+. +..+ ...+-...+.++++++..+ +-.....|++++ .+...+.+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~--~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFF--IKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhh--hhHhHHHHHHHHHHHHHHhheeee
Confidence 99999888778889999988865444433 2222 2333344556666654333 223333444433 322222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPT 512 (1059)
Q Consensus 437 ~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~----~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~~~ 512 (1059)
+..+-.+++++....-.+-.....+.+-|..++|.|+.|+ ++++.+.+..+.|.|.+..-.+++.....+... .
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--g 456 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--G 456 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--H
Confidence 3444455555554444444445678888999999999874 566677777777766544433333333222111 1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCC
Q 001528 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1059)
Q Consensus 513 ~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1059)
+.+...+.+|... .+.+|.|...-+.+++..+.+|++.+......++...+-++|+.+.+++++.-.+.+...+.....
T Consensus 457 ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~ 535 (790)
T KOG0056|consen 457 LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQ 535 (790)
T ss_pred Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccC
Confidence 2222333344444 478999998888899999999999999999999999999999999997654322111122223356
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
+.|+|+|++|+|+++ +|+|+||||+++||+.+|+|||||+||||++++|.++++.++|+|.+|| +
T Consensus 536 G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 789999999999874 6999999999999999999999999999999999999999999999999 4
Q ss_pred EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
||.||||..+||+||-+||.||+| .++|++.++.+|++.++-|-.+|+||+|.|||||..||||+|||||+||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999999 5788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc-CchHHHHHH
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVN 817 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~-~~~~~~l~~ 817 (1059)
.|++|||+|||||.+||+.| |.++.++.++||.|+|+||++++-+||.|+|++||+|+|.|+|+||+++ +|.|+++++
T Consensus 694 ~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred cEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 99999999999999999997 7899999999999999999999999999999999999999999999998 899999997
Q ss_pred Hhh
Q 001528 818 AHR 820 (1059)
Q Consensus 818 ~~~ 820 (1059)
.+.
T Consensus 773 ~qq 775 (790)
T KOG0056|consen 773 AQQ 775 (790)
T ss_pred HHH
Confidence 654
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3e-69 Score=714.40 Aligned_cols=472 Identities=17% Similarity=0.189 Sum_probs=368.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1059)
Q Consensus 343 ~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1059)
...+.+.-..+...+|++.++.+...+++.++|+++|++++|++.+++... .+..+...++.++.++++++....+.++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777788999999999999999999999999999999988654 3444445555555555544433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001528 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK- 500 (1059)
Q Consensus 422 ~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~- 500 (1059)
+.++++++...+.....+..+..++...+.++...+..+|.++|+++||.|++|+.|.++..+..+...+.........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222223333344444444556667788999999999999999999998887666555443322111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001528 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1059)
Q Consensus 501 ~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 580 (1059)
.+...+..+...++ +..+++.....+.++++.+..++.+...+..|+..+......+.++.+|.+|+.++++.++.++
T Consensus 1190 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1190 WLAVRLECVGNCIV--LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 11111111111111 1111222233467999999999999999999999999999999999999999999996543321
Q ss_pred chhhh-cccc--CCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc
Q 001528 581 DDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657 (1059)
Q Consensus 581 ~~~~~-~~~~--~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~ 657 (1059)
...+. .+++ +..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+|
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1346 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEEC
Confidence 11111 1111 234679999999999764 3579999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 658 G-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 658 g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
| +|+||||+|.+|+|||||||....+++++++++|++.|+|+++++.+|+|+||+|||+|.||||||
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 8 599999999999999999998444789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||||+||||++++|+|+||||||||||++|++.| ++.++...+++|+|+||||++++.+||+|+||++|+|+|.|+|+|
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999876 678888889999999999999999999999999999999999999
Q ss_pred HHHcCchHHHHHHH
Q 001528 805 LLLAGTAFEQLVNA 818 (1059)
Q Consensus 805 L~~~~~~~~~l~~~ 818 (1059)
|++++|.|++++++
T Consensus 1506 Ll~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1506 LLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHhCCCHHHHHHHH
Confidence 99999999999864
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.4e-69 Score=653.53 Aligned_cols=511 Identities=20% Similarity=0.261 Sum_probs=388.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1059)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~ 355 (1059)
++.++...++.++..++..+.|+++..+++....+.........+++++++..++..++.....+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888899999999999999866311112222222333333444444454444455667888899999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1059)
Q Consensus 356 ~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~ 434 (1059)
.+|+|.++++....++.++|+++|++++|++++.++.. .+..+....+..++++++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999987653 24444444444444444443222222222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 001528 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWMSPTI 513 (1059)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~~~~~~ 513 (1059)
..+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+..........+ .....+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888899999999999999999999998887777654433222211111111111111 1111111
Q ss_pred HHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCC
Q 001528 514 ISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1059)
Q Consensus 514 v~~-~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1059)
..+ ..+.++.+. ++.+|.+.+++++.+...+..|+..+...+..+.+++++.+|+.++++.++.+.+. ... .....
T Consensus 242 ~~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~-~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APV-TAAPA 318 (529)
T ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCC-CCCCC
Confidence 112 223344444 47899999999999999999999999999999999999999999999744322111 111 11123
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
+.|+++|++|+|+++ ++++|+|+||+|+|||+++||||+|||||||+++|+|+++|.+|+|.++| +
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 479999999999753 35899999999999999999999999999999999999999999999998 3
Q ss_pred EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
++||||+|++|++||||||.+|.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999876 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEE
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl 791 (1059)
+|+||||||||||+++++++. +.+.+..+++|+|+||||++.++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVT-EALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999986 5677777899999999999999999999986
No 35
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.6e-69 Score=708.17 Aligned_cols=472 Identities=19% Similarity=0.239 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1059)
Q Consensus 343 ~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1059)
.+.+.+.-..+...+|++.++.+...++++++|+++|+++.|++.+++... .+..+....++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777889999999999999999999999999999999987543 3444455555555554444333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001528 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK- 500 (1059)
Q Consensus 422 ~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~- 500 (1059)
+.+++++++..+.....+..++.++.....+....+..+|.++|+++||.|++|++|.+..++..+...+.........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222233333344444445566778899999999999999999988776665554443221111111
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-HHhcCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001528 501 AYGTVIYWMSPTIISSVIF-LGC-ALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1059)
Q Consensus 501 ~~~~~~~~~~~~~v~~~~f-~~~-~l~~~~~lt-----~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL 573 (1059)
.....+.. +..++.+ .+. ....++..+ ++.+-.++++...+..++..+......+.++.+|.+|+.+++
T Consensus 1138 wl~~~l~~----~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~ 1213 (1622)
T PLN03130 1138 WLAIRLET----LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213 (1622)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111 1111111 111 122222111 333334445555666777777788888899999999999999
Q ss_pred cCCCCCCchhh-hcccc--CCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC
Q 001528 574 LDHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1059)
Q Consensus 574 ~~~e~~~~~~~-~~~~~--~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~ 650 (1059)
+.++.++...+ ..+++ +.++.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|+
T Consensus 1214 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~ 1292 (1622)
T PLN03130 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292 (1622)
T ss_pred CCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 75443221111 11111 234679999999999754 357999999999999999999999999999999999999999
Q ss_pred ccEEEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCC
Q 001528 651 SGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1059)
Q Consensus 651 ~G~I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 717 (1059)
+|+|.+|| +|+||||+|.+|+|||||||.++++++++++++|++.|+++++++.+|+|+||+|||+|
T Consensus 1293 ~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred CceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 99999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEE
Q 001528 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 797 (1059)
.||||||||||+||||++++|+|+||||||||||++|++.| ++.|+...+++|+|+||||++++.+||+|+||++|+|+
T Consensus 1373 ~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999986 67898888999999999999999999999999999999
Q ss_pred EecChHHHHHc-CchHHHHHHHhh
Q 001528 798 QSGNYQELLLA-GTAFEQLVNAHR 820 (1059)
Q Consensus 798 e~Gt~~eL~~~-~~~~~~l~~~~~ 820 (1059)
|.|+|+||+++ +|.|+++++...
T Consensus 1452 E~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1452 EFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999987 689999987543
No 36
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-68 Score=602.12 Aligned_cols=545 Identities=21% Similarity=0.299 Sum_probs=389.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1059)
+.+...+ +++.+.++.++.++........=.+-..+|.-..-... .....++-+++.=+..+..+.....-...++..
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344444 66666666555544433333222223444443211111 111112222222233344444333333446677
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 001528 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVGLGALPG 423 (1059)
Q Consensus 346 ~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L--~~~lg~~~l~g 423 (1059)
..|+-+.++..+|+|....++....+...||+.|++..|++.++++.......|...+-++.+.++. |.-++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8899999999999999999998888899999999999999999997655555444433333322222 33344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001528 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAY 502 (1059)
Q Consensus 424 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~-~~~~~ 502 (1059)
+..++....++..+.+.-++..++..+.+..-.+...|.+.|....+++|.++.+.+.+++.-+.-.+.-++.. +....
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444555566666677777766667666677899999999999999999998877653332222222221 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001528 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNAS-TIFTVLATLRSMGEPVRMI-PEALSIMIQVKVSFDRINAFLLDHELNN 580 (1059)
Q Consensus 503 ~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~-~~f~~l~l~~~l~~pl~~l-p~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 580 (1059)
..++......+++...+......+.+..+.. .+...+..|..+ ++...+ |..+....|+..|.+|+.+.+++++...
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 2222222223333222222222333445532 222222223322 233322 3778889999999999999987665432
Q ss_pred chhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--
Q 001528 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1059)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-- 658 (1059)
.+.+ . .+..+..++++|++|+|+.. +.++|+|+||++++||++||+|+||||||||++++.|-++|++|+|..+|
T Consensus 325 ~~~~-~-~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~ 401 (573)
T COG4987 325 FPDE-Q-TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVE 401 (573)
T ss_pred CCcc-c-cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcC
Confidence 2211 1 11122379999999999865 56899999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 -----------~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++.++|.+++|++|+|||+.+++| .++|+++++++.++|++.++..|+|++|.+||+|.+|||||||
T Consensus 402 ~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 402 IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 5999999999999999999999998 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
|++|||++++|++++||||||.+||+.||+++.+ .+...++|||+|+||||+..++++|+|+||+||+|+|+|+|+||+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~-ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHH-HHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhh
Confidence 9999999999999999999999999999999985 566778999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHH
Q 001528 807 LAGTAFEQLVN 817 (1059)
Q Consensus 807 ~~~~~~~~l~~ 817 (1059)
+++|.|.++++
T Consensus 561 ~~~g~~~~l~q 571 (573)
T COG4987 561 ANNGRYKRLYQ 571 (573)
T ss_pred ccccHHHHHhc
Confidence 99999998864
No 37
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-69 Score=607.42 Aligned_cols=528 Identities=22% Similarity=0.289 Sum_probs=406.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 285 CALLRTIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1059)
Q Consensus 285 ~~l~~~~~~~~~P~ll~~li~~~~~~~-~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~ 361 (1059)
+.+.+-.+....|++.+..++.+.+.+ .+ +......+.++++..+..+.++....+....+..++-......+|++.
T Consensus 38 ~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~ 117 (591)
T KOG0057|consen 38 LLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL 117 (591)
T ss_pred HHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446777888999999988774221 11 122223344455555666665555555566777888888888999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 001528 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAK 439 (1059)
Q Consensus 362 L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~-gl~~~~~~~~l~~~~~~ 439 (1059)
+.++...+.+..+|++.+.|..-...+.+++.. +..+....+++.+....++...|+...+ .+..+.....+...+..
T Consensus 118 ~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 118 MSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred HhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 999999888999999999998777777665432 3444555677777777788888875332 22222233333344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001528 440 ILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR-REKEFKWLSEAQLRKAYGTVIYW-MSPTIISSV 517 (1059)
Q Consensus 440 ~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~-R~~El~~l~~~~~~~~~~~~~~~-~~~~~v~~~ 517 (1059)
+-.+++++..++.++..+..-|.|.|-.+||.|+-|+.-.++.... ++.|-..++..... ++..+..- ...+..+.+
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~~iFsv~~~~i 276 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQKAIFSVALTFI 276 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999998765555432 22232211111111 11111111 111122233
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEE
Q 001528 518 IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKI 597 (1059)
Q Consensus 518 ~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~ 597 (1059)
.+.+..-+..+.+|.+.....-+++..|+.|+..+......+.|+..-++-+...+..++... + ...+....++.|+|
T Consensus 277 m~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~-~-~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 277 MVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ-E-AALPIELFGGSIEF 354 (591)
T ss_pred HHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh-h-ccCCcccCCCcEEE
Confidence 333333233367999999989999999999999999999999999888776665443322111 1 01122234567999
Q ss_pred EeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEc
Q 001528 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVS 664 (1059)
Q Consensus 598 ~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~ 664 (1059)
+|++|+|+++ +++|+++||+||+||+|||||++||||||++++|+++++ .+|+|.+|| .|||||
T Consensus 355 ~dV~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 9999999853 579999999999999999999999999999999999999 999999999 499999
Q ss_pred ccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 665 QTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 665 Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
|+..|||+||-+||.+|++ .++|++.++++.++++|-+..||+||+|.|||+|.-||||||||||||||+++||+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 9999999999999999999 489999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHHh
Q 001528 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~~ 819 (1059)
|||||+||++||+.|++ .+++.+.|||+|+|.||++++++||+|++++||++.|.|+|+||+++.+.|++++..+
T Consensus 512 DEaTS~LD~~TE~~i~~-~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 512 DEATSALDSETEREILD-MIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586 (591)
T ss_pred cCcccccchhhHHHHHH-HHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccc
Confidence 99999999999999985 5677889999999999999999999999999999999999999999888888887543
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.1e-68 Score=699.82 Aligned_cols=471 Identities=18% Similarity=0.234 Sum_probs=354.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1059)
Q Consensus 343 ~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1059)
.+.+.+.-..++..++++.++.+...++++++|+++|++++|++.+++.... +..+....++++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777889999999999999999999999999999999876443 333444444554444444333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1059)
Q Consensus 422 ~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~ 501 (1059)
+.++++++...+.....+..++.++.....+....+..+|.++|+++||.|++|++|.++.++..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111122222334444455556667788999999999999999999988776655544432211111111
Q ss_pred -HHHHHHHHHHHHHHHHH-HHH-HHHhcCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001528 502 -YGTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1059)
Q Consensus 502 -~~~~~~~~~~~~v~~~~-f~~-~~l~~~~~lt-----~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL 573 (1059)
....+.. +..++. +.+ +.....+.+. ++.+..++++...+..|+..+...+..+.++.+|++|+.+++
T Consensus 1135 wl~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~ 1210 (1495)
T PLN03232 1135 WLTIRLET----LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYI 1210 (1495)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 111111 111 1222212221 222333555666677899999999999999999999999999
Q ss_pred cCCCCCCchhhh-cccc--CCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC
Q 001528 574 LDHELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1059)
Q Consensus 574 ~~~e~~~~~~~~-~~~~--~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~ 650 (1059)
+.++.++...+. .+++ +..+.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|+
T Consensus 1211 ~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~ 1289 (1495)
T PLN03232 1211 DLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289 (1495)
T ss_pred cCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 754332211111 1111 234579999999999654 357999999999999999999999999999999999999999
Q ss_pred ccEEEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCC
Q 001528 651 SGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1059)
Q Consensus 651 ~G~I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 717 (1059)
+|+|.+|| +|+||||+|.+|+|||||||.++++++++++++|++.|+|+++++.+|+|+||+|||+|
T Consensus 1290 ~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 99999998 49999999999999999999999899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEE
Q 001528 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 797 (1059)
.||||||||||+||||++++|+|+||||||||||++|++.| ++.++...+++|+|+||||++++.+||+|+||++|+|+
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999986 67888888999999999999999999999999999999
Q ss_pred EecChHHHHHcC-chHHHHHHHh
Q 001528 798 QSGNYQELLLAG-TAFEQLVNAH 819 (1059)
Q Consensus 798 e~Gt~~eL~~~~-~~~~~l~~~~ 819 (1059)
|.|+|+||++++ +.|+++++.+
T Consensus 1449 E~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1449 EYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999886 5899998654
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-66 Score=687.36 Aligned_cols=470 Identities=15% Similarity=0.186 Sum_probs=359.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1059)
Q Consensus 348 r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1059)
+....+...+|++.++.+...+++.++|+++|++++|++.+++.+. .+..+....+.++.++++++....+..++.+++
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788999999999999999999999999999999988654 244444455555555544443332222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001528 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGTV 505 (1059)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~-~~~~~~~~ 505 (1059)
+++...+...+.+..++.++.....++.-...++|.++|+++||.|++|+.+.++..+.-+...+...... ........
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222233344445555555566667889999999999999999999887776554443333211111 11111111
Q ss_pred HHHHHHHHHHHHHHHH-H-HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-ch
Q 001528 506 IYWMSPTIISSVIFLG-C-ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD 582 (1059)
Q Consensus 506 ~~~~~~~~v~~~~f~~-~-~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~-~~ 582 (1059)
.......++.++.+++ + .+.+.+.++++.+..++.+...+..|+..+...+..+.++.+|++|+.++++..+.++ ..
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 1111112212222211 1 1223345788888888888788889999999999999999999999999996322110 00
Q ss_pred -----------------------hhh-c-----cccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCC
Q 001528 583 -----------------------VRR-I-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1059)
Q Consensus 583 -----------------------~~~-~-----~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sG 633 (1059)
.+. . +.....+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTG 1346 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTG 1346 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCC
Confidence 000 0 001123579999999999754 3569999999999999999999999
Q ss_pred CChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCch
Q 001528 634 AGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700 (1059)
Q Consensus 634 sGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~ 700 (1059)
||||||+++|+|+++|.+|+|.+|| +|+||||+|.||+|||||||..+.++++++++++++.|+|++
T Consensus 1347 SGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243 1347 SGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRE 1426 (1560)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChH
Confidence 9999999999999999999999998 499999999999999999999888899999999999999999
Q ss_pred HHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC-CCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q 001528 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1059)
Q Consensus 701 di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~-~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l 779 (1059)
+++.+|+|+||.|||+|.||||||||||+||||++++ |+|+|||||||+||++|++.| ++.++...+++|+|+||||+
T Consensus 1427 ~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IAHRl 1505 (1560)
T PTZ00243 1427 RVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIAHRL 1505 (1560)
T ss_pred HHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEeccH
Confidence 9999999999999999999999999999999999996 899999999999999999987 67888888999999999999
Q ss_pred cccccCCeEEEEeCCeEEEecChHHHHHc-CchHHHHHHHh
Q 001528 780 EFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1059)
Q Consensus 780 ~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~-~~~~~~l~~~~ 819 (1059)
+++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++..
T Consensus 1506 ~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1506 HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999985 88999998654
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.8e-64 Score=661.34 Aligned_cols=472 Identities=19% Similarity=0.194 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1059)
Q Consensus 343 ~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1059)
.+.+.+.-..+...++++.++.+...+++.++|+++|+++.|++.+++... .+..+....+.++..+++++...++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777788999999999999999999999999999999987544 3444444455555555554444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001528 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRK 500 (1059)
Q Consensus 422 ~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~-~~~~ 500 (1059)
+.++++++...+...+.+..++.++.....+....+..+|.++|+.+||.|++|+.|.++..+.-+...+..... ....
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223333334444455555566677788899999999999999999998887766544322211111 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001528 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1059)
Q Consensus 501 ~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 580 (1059)
.+...+..+...++..++++. ++....+++.+..++++...+..++..+...+..+.++.+|.+|+.+|++.++.++
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 111111111111111111111 11123455555566666666778888888888899999999999999986543221
Q ss_pred chhh--------------h-ccc--cCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHH
Q 001528 581 DDVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1059)
Q Consensus 581 ~~~~--------------~-~~~--~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~l 643 (1059)
...+ . .++ .+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1100 0 000 1224679999999999764 46899999999999999999999999999999999
Q ss_pred hCCCCCCccEEEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCC
Q 001528 644 LGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710 (1059)
Q Consensus 644 lGe~~~~~G~I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~ 710 (1059)
+|+++ .+|+|.++| +|+||||+|.||+|||||||....++++++++++++.|+|.++++.+|+|+|
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99998 799999998 5999999999999999999987778899999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEE
Q 001528 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1059)
Q Consensus 711 T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iiv 790 (1059)
|+|||+|.||||||||||+||||++++|+|+|||||||+||++|++.| ++.|+...+++|+|+||||++++..+|+|+|
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 5788888899999999999999999999999
Q ss_pred EeCCeEEEecChHHHHHcCchHHHHHHHhh
Q 001528 791 LEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1059)
Q Consensus 791 l~~G~I~e~Gt~~eL~~~~~~~~~l~~~~~ 820 (1059)
|++|+|+|.|+|+||+++++.|+++++++.
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 999999999999999998999999987654
No 41
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-62 Score=597.76 Aligned_cols=510 Identities=17% Similarity=0.145 Sum_probs=369.4
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1059)
Q Consensus 271 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (1059)
+++ .+++.+++..++.++..+.....|.+++.+++...... . . ...+.+++++.. .++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~-~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q-G-SLFSFGGLCLLA---LLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c-h-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 566 77888888888888999999999998888775321111 1 1 111111222211 122222233456778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1059)
Q Consensus 350 r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1059)
...++..+|+|.++++....++.++|++++++++|++.+.++...+..+....+.++++++++++.-...+++.++.+++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999888889999999999999999988754444444444444444444443332222322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1059)
.+.+.....++.++...+..+..++..+.+.|.++|++++|.++.++ ...++. ++.++...+..+ ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEIL---IFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHH
Confidence 22333344555666666777777888899999999999999999853 223333 223222221111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-Cc-
Q 001528 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN-ND- 581 (1059)
Q Consensus 504 ~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~-~~- 581 (1059)
.+........+.++.+.+. .. +.++.+.+++++.+...+..|+..+...+..+.++++|.+|+.++++.++.+ ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 5789999999999999999999999999999999999999999998532111 00
Q ss_pred -hhhhc-----cccCCCCcEEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccE
Q 001528 582 -DVRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1059)
Q Consensus 582 -~~~~~-----~~~~~~~~i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~ 653 (1059)
..+.. +.......|+++|++|+|++.+ ++++|+|+||++++||+++||||+|||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 00000 1111235699999999997532 246999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 654 I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
|.++| .++||+|+|++|++|++||+ ..+.++++.+++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999996 33467889999999999999999999999994 899
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
||||||||+||||++++|+|+|||||||+||+++++++.+..+... .++||+|+||||++.+..||+|++|++|+++|.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999876555443 468999999999999999999999999999874
No 42
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.9e-63 Score=551.20 Aligned_cols=527 Identities=22% Similarity=0.310 Sum_probs=412.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1059)
...+....++..++..++++.+-.++.++.|+++-..-|-+-.+ .+......+.++.....+++.++...-.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S-~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPS-RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666788888889999999999999999887766644221 12222233333333444455555544455678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1059)
Q Consensus 347 ~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~------~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1059)
.++...|...+|.-+.+.+...+......+.+ .|.+.+..|.. ++...|. |+-+.+ ++++.-.+|+.+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH-HHHHHH-HHHHHHHHHHHH
Confidence 99999999999998865554433222233333 47777766543 3444453 544433 345567889988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1059)
Q Consensus 421 l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1059)
++|.++++++..+|-.. .++--++..+..-+|....+-.+.|..+|+..|..+...++..+...+.++......-..
T Consensus 166 ~~ga~iLv~la~ln~~~---t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERA---TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88888777766665443 344455666677788899999999999999999999988888887777666555443332
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001528 501 A-YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1059)
Q Consensus 501 ~-~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1059)
. ++...-.+--.+-+.+.-.+.+++-++++|++.+++.-.+..-.-.|+...-..+.++..++.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2 222222222233444555566666668999999988765555556799999999999999999999999999754432
Q ss_pred CchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-
Q 001528 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1059)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g- 658 (1059)
.++.+.+.+++.+.+|++++.= |+.++|+|+||||++++||-++|+||||||||||.++|.|-.+|.+|+|.+||
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~P-Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAP-PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecC-CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 2334555667889999999964 55568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEcccccccccCHHHHhc-cCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ------------~iayv~Q~pwi~~~TIreNIl-fg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
+|+|.||+--+|.|||+|||. |+.+.|++++.++.++++.||-|..||+||||.|||.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 699999999999999999995 9989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|||+||||+|.||.+++||||-|+||.+-|+.+. ++|.+. .+|.|+|+||||++.+..+|+|++|+||++...|+-+|
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~-~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALA-AAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH-HHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 9999999999999999999999999999999976 566554 58999999999999999999999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
.+++
T Consensus 558 VLa~ 561 (580)
T COG4618 558 VLAK 561 (580)
T ss_pred HHHH
Confidence 8864
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-64 Score=546.44 Aligned_cols=465 Identities=22% Similarity=0.308 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001528 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGAL-PG 423 (1059)
Q Consensus 346 ~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l-~g 423 (1059)
+......+....|++.++|+.....+..+|.+..-+..-.+-|+...++ +..+....+++.+..+++++..||... ..
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 3344445555678888888887777777777654444333344444333 334445668888888888888887543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhchHHHHHHHHHHHH----HHHHHHHHHHHH
Q 001528 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDER-LRSTSEILNNMKIIKLQSWEEKFKSLIESRR----EKEFKWLSEAQL 498 (1059)
Q Consensus 424 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r-~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R----~~El~~l~~~~~ 498 (1059)
++.+++...+.+....+ +...++.|+..|.. .....+.|-+..++|.|+-|+.+.++..... +.+.+......+
T Consensus 90 ~vtv~lY~~ftv~~s~w-r~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 90 LVTVILYLLFTVIVSDW-RTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHhheeehhh-hHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 33333322222222222 33334445555543 4556789999999999999877665554433 333332111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001528 499 RKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1059)
Q Consensus 499 ~~~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 578 (1059)
+......++... ...........+..+.+|.+.....-++...+..|+..+......+.|++.-.+++.+.+..+..
T Consensus 169 Ln~gQ~~I~~~~---l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~ 245 (497)
T COG5265 169 LNFGQTAIFSTG---LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAE 245 (497)
T ss_pred HHHhhHHHHHHH---HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchh
Confidence 111111111110 11111122222334789999999999999999999999999999999999999999998864322
Q ss_pred CCchhhhcccc-CCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc
Q 001528 579 NNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657 (1059)
Q Consensus 579 ~~~~~~~~~~~-~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~ 657 (1059)
..+...-.+.. ...+.+.|+|++|.|+++ +|+|+++||++++|+++||||++|+||||++++|.++|++++|.|.++
T Consensus 246 v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id 323 (497)
T COG5265 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323 (497)
T ss_pred hccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEc
Confidence 11111111111 334679999999999864 699999999999999999999999999999999999999999999999
Q ss_pred Ce-------------EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 658 GS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 658 g~-------------iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
|+ ||.|||+..|||+|+..||.+|+| .++++..+++++++++++|+.||+|++|.|||+|-.||||
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgg 403 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGG 403 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCc
Confidence 83 999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChH
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
+|||||+||+++++|+|++|||+|||||.|||+.| +..++...+|+|.++|+||++++-+||+|+||+||+|+|.|+|+
T Consensus 404 ekqrvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 404 EKQRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred hHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHH
Confidence 99999999999999999999999999999999997 67888889999999999999999999999999999999999999
Q ss_pred HHHHcCchHHHHHH
Q 001528 804 ELLLAGTAFEQLVN 817 (1059)
Q Consensus 804 eL~~~~~~~~~l~~ 817 (1059)
||++++|.|++++.
T Consensus 483 ~ll~~~g~ya~mw~ 496 (497)
T COG5265 483 ELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHcCChHHHHhc
Confidence 99999999999873
No 44
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-60 Score=577.68 Aligned_cols=510 Identities=16% Similarity=0.187 Sum_probs=360.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1059)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1059)
+.+.+++.+++.++...++.++..++.+.. |++.+.+++..... ......+++.+++..++.. ...+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTL----GSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 456677778888888888888888887764 67777777754321 1111111111111111111 122334456
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1059)
Q Consensus 346 ~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1059)
+.++...++..+|+|.++++....+++++|+++|++++|++.+..+...+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67777778888999999999988889999999999999999988755445566677777777766666555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1059)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1059)
++++...+...+.++.++..++.++..+++.+.++|.++|++++++.+ . ++.+.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 444444455566777778888888899999999999999999997432 2 23333333333333222111 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001528 500 KAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1059)
Q Consensus 500 ~~~~~~~~~~~~~~-v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 578 (1059)
.............. +....+.+... +.+.++....+ ..+...+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSL-GWADTNVAATY--SLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11110110011111 11111111111 11222222222 2223336689999999999999999999999999754432
Q ss_pred CCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC
Q 001528 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1059)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g 658 (1059)
++.+ +..+ .+..+.++++|++|+|+. ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|.+|+|.++|
T Consensus 309 ~~~~-~~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RPQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 1101 1111 111246999999999974 34799999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
+++||||+|++|++|++|| +...++++.+++++.+++.++++. |+|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 556788899999999988887763 4442 25899999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEe-cCh
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQS-GNY 802 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~-Gt~ 802 (1059)
|||+||||++++|+|+|||||||+||+++++.+.+ .+...+ +++|+|+||||++.++.||+|++|++|+++|. |++
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~-~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~ 534 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQ-VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE 534 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence 99999999999999999999999999999998764 454443 58999999999999999999999999999986 443
Q ss_pred HH
Q 001528 803 QE 804 (1059)
Q Consensus 803 ~e 804 (1059)
.|
T Consensus 535 ~~ 536 (547)
T PRK10522 535 RD 536 (547)
T ss_pred hh
Confidence 33
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-60 Score=594.18 Aligned_cols=470 Identities=18% Similarity=0.236 Sum_probs=359.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGA 420 (1059)
Q Consensus 342 ~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1059)
....+++.-..|-..++++.+|-+..+++..++|.|+|+.|.|++.+++.... +.......++++..++++-....+..
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 34567778888888889999999999999999999999999999999875543 33433444444433333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 001528 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIA----QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA 496 (1059)
Q Consensus 421 l~gl~~~~~~~~l~~~~~~~~~~~~~~~~~~----~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~ 496 (1059)
++.+++.+++ +.+.+...+..++.... +.--....+|.++|+-+|+.|+.|++|.++....-+...+.....
T Consensus 962 i~~~pl~v~~----~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~ 1037 (1381)
T KOG0054|consen 962 IAIIPLGVIY----YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLS 1037 (1381)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHH
Confidence 2222222222 22333333333322221 223356789999999999999999999988877655544321111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001528 497 -QLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1059)
Q Consensus 497 -~~~~~~~~~~~~~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~ 575 (1059)
...+++..-+..+...++..+++....... +..++|.+--++++--.+..-+..+-.....+-.-.+|++|+.+|.+.
T Consensus 1038 ~~a~RWla~Rle~ig~~~v~~~al~~vl~~~-~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~ 1116 (1381)
T KOG0054|consen 1038 ISANRWLAVRLELLGNLVVLIAALFAVLLPS-GLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDI 1116 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcC
Confidence 111122222222333333333332222222 227788888888877777776777767777777778999999999984
Q ss_pred CCCCCchh-hh--ccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCcc
Q 001528 576 HELNNDDV-RR--ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1059)
Q Consensus 576 ~e~~~~~~-~~--~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G 652 (1059)
++..+... +. .+.-+.++.|+|+|++.+|.++ .+++||||||+|+|||+|+|||++|||||||+++|.|..+|.+|
T Consensus 1117 ~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1117 PSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 43321111 11 1112356899999999999876 46899999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 653 ~I~v~g-------------~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
+|.+|| +++..||||.||+||+|.|+---.+++|+++|+|+|.|+|++.++++|+|.|++|.|+|.|
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 999998 6999999999999999999988888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
+|-||||-++||||++++++|++|||+|++||.+|... .|+.|+...+++|||.|+||++++-++|+|+|||+|+|+|.
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~l-IQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL-IQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHH-HHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 99999999999999999999999999999999999885 58999999999999999999999999999999999999999
Q ss_pred cChHHHHHc-CchHHHHHHH
Q 001528 800 GNYQELLLA-GTAFEQLVNA 818 (1059)
Q Consensus 800 Gt~~eL~~~-~~~~~~l~~~ 818 (1059)
|++++|+++ ++.|++++.+
T Consensus 1355 dsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1355 DSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred CChHHHHhCCcchHHHHHHH
Confidence 999999977 5667666543
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4e-55 Score=538.95 Aligned_cols=504 Identities=16% Similarity=0.151 Sum_probs=359.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1059)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~-g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~ 355 (1059)
.++...++.++.+.+....|.+.+.+++.+...+. .... .+.+++++++..++.++.. +...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~----~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIK----YLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45566777788888999999999999987643321 1111 1222222333333333322 2234445555555555
Q ss_pred HHHHHHhc----CCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001528 356 AVYQKQLK----LSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA-LPGLVLFLI 429 (1059)
Q Consensus 356 ~iy~K~L~----l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~-l~gl~~~~~ 429 (1059)
.+.++.++ .+....++ ++|++.+++++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55554443 33333343 579999999999999987543 355555666777777776776555543 222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 001528 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYW 508 (1059)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~~ 508 (1059)
...+...+.+.+.+..++..+..++-....+|.++|+++||+|+-|+...++.++.-++-.+...+.....+. ..+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455566777788888888888888899999999999999999999877766655444433333332222222 111111
Q ss_pred HHHH--HHHHHHHHHH-HHhcC----CCCCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001528 509 MSPT--IISSVIFLGC-ALTGS----APLNASTIFT-VL---ATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1059)
Q Consensus 509 ~~~~--~v~~~~f~~~-~l~~~----~~lt~~~~f~-~l---~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 577 (1059)
+... ......+++. ++... +.+|.+..+. ++ .++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111112222 22221 4688776544 33 34566789999999999999999999999999996422
Q ss_pred C-C-----Cchhhh-----------------ccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCC
Q 001528 578 L-N-----NDDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1059)
Q Consensus 578 ~-~-----~~~~~~-----------------~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGs 634 (1059)
. + ...... .......+.|+++|++|+|+. ++++|+|+||+|++||.++|+||+||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 1 0 000000 000112346999999999963 24799999999999999999999999
Q ss_pred ChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccccCHHHHhccCC--------CCCHHHHHHHHHHcCCchHHhc
Q 001528 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1059)
Q Consensus 635 GKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~~TIreNIlfg~--------~~~~~~y~~vl~ac~L~~di~~ 704 (1059)
|||||+++|.|+++|.+|+|.+++ +++||||+|+++++|++|||.++. ..++++.+++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999865 699999999999999999999974 2467889999999999998887
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc
Q 001528 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1059)
Q Consensus 705 Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~ 784 (1059)
|.|++|..+ .|.+||||||||++||||++++|+++|||||||+||+++++.+. +.+.. .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~-~~l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY-RLCRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHH--cCCEEEEEeCchHHHHh
Confidence 999999987 57799999999999999999999999999999999999999876 45554 38999999999999999
Q ss_pred CCeEEEEeC
Q 001528 785 VDRILVLEG 793 (1059)
Q Consensus 785 aD~Iivl~~ 793 (1059)
||+|++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999963
No 47
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-50 Score=453.12 Aligned_cols=263 Identities=25% Similarity=0.362 Sum_probs=225.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEEEeeeEeeCCC
Q 001528 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1059)
Q Consensus 528 ~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~ 607 (1059)
+++++..+|+++++|+.+..|+..+|..... .+|+.+|+..+|.+...... ..+..+.|+++|++++|+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6789999999999999999999888765543 56899998766643211111 11234679999999999743
Q ss_pred CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------------eEEEEcccc
Q 001528 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1059)
Q Consensus 608 ~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g---------------~iayv~Q~p 667 (1059)
..++|+|+||+|++||+++|+|++|||||||+++|+|+++ |.+|+|.++| +++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999997 4699988754 599999999
Q ss_pred cccccCHHHHhccCCCC---C-HH----HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 668 wi~~~TIreNIlfg~~~---~-~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
|+|++|++|||.|+..+ + ++ .++++++.|+|.+++ ++.++++|.+|||||||||+||||+|++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999987532 2 22 378889999986654 478999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+||||||||||+++.++ ++++|.++.+++|+|+|||+++++.+ ||+|++|++|+|+|.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999998 56889888889999999999999887 999999999999999999998754
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.7e-47 Score=417.47 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=206.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.|+++|++++|+++ +.++|+|+||+|++||+++|+|++|||||||+++|.|+++ .+|+|.++| +|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999643 3579999999999999999999999999999999999998 799999988 49
Q ss_pred EEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 661 ayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
+||||+|++|++|++||+.+..++++++++++++.++|.+.+..+|+|++|.++|+|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975446788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHHHh
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~~~ 819 (1059)
+||||||++||+++.+.+ ++.+....+++|+|+|||+++.+..||+|++|++|++++.|++++|+++++.|++++...
T Consensus 160 lllDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999875 567776667899999999999999999999999999999999999999888888887643
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=357.28 Aligned_cols=201 Identities=26% Similarity=0.447 Sum_probs=178.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
-|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3789999999964 4699999999999999999999999999999999999999999999999 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
+|+|.|+.-||. -|+-|||..+.- .+ +++-.+.++..+|.+-.+..| ..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 789999999996 699999998631 22 345566788888888877777 5799999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|||+.-+|+++|+||||||||++....+. +++..+ -.|.|.|+|||.+.+.++ ||+|+.|++|+|+|+|+++|+..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL-~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVL-DVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHH-HHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999876 466554 478999999999999876 799999999999999999998765
Q ss_pred C
Q 001528 809 G 809 (1059)
Q Consensus 809 ~ 809 (1059)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 3
No 50
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.9e-42 Score=380.14 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=200.3
Q ss_pred CCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccc
Q 001528 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1059)
Q Consensus 590 ~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi 669 (1059)
.....++++|+++.+ .++|+|+||+|++||+++|+|++|||||||+++|.|.++|.+|+|.++|.|+|++|++++
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 345679999999962 469999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcc
Q 001528 670 QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 670 ~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SA 749 (1059)
++.|++|||.++...++.++.++++++++.+.+..+|++++|.+++++.+||||||||++||||++++|+++||||||++
T Consensus 110 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999876666778888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHH
Q 001528 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1059)
Q Consensus 750 lD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~ 813 (1059)
||+.+.+.+.+.++....+++|+|++||+++.++.||+|++|++|++++.|+++++.+....|.
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 9999988877655555556899999999999999999999999999999999999986544444
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-42 Score=375.27 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=200.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+.. ..++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999642 35799999999999999999999999999999999999999999999987 389
Q ss_pred EEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++|++++++.|++|||.++.+ .+.++..+.++..++.+.++.+|.|.++..+.++.+|||||||||+||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998764 456677778888899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHH
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~ 816 (1059)
+||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+.+++.++.+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 9999999999999999876 56766667899999999999998899999999999999999999998877776654
No 52
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-42 Score=366.65 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=186.1
Q ss_pred EEEEeeeEeeCCCCC--CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccccccc
Q 001528 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~--~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~ 672 (1059)
++++|++++|++..+ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|.+|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999965311 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCH
Q 001528 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1059)
Q Consensus 673 TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~ 752 (1059)
|++|||.++.++++++..++.+.+++.+++..+|.|++|.+++++.+||||||||++||||++++|+++||||||++||.
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCe
Q 001528 753 HTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1059)
Q Consensus 753 ~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 795 (1059)
+..+.+++..+.... +++|+|++||+++.++.||+|++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999988766665443 4799999999999988899999999985
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6e-42 Score=376.86 Aligned_cols=224 Identities=28% Similarity=0.409 Sum_probs=203.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
.+.++++|++++|+.. +.++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4679999999999642 35799999999999999999999999999999999999999999999977
Q ss_pred eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
.++||+|+|+++++|++||+......++++++++++..++.+.++.+|.|++|.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999876555677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcC-chHHHHHH
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQLVN 817 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~-~~~~~l~~ 817 (1059)
+++||||||++||+++...+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQ-KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHH-HHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 999999999999999988764 6676666789999999999999899999999999999999999998753 45666543
No 54
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-42 Score=358.98 Aligned_cols=189 Identities=32% Similarity=0.484 Sum_probs=168.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------eEEEEcc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------~iayv~Q 665 (1059)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4789999999974 5799999999999999999999999999999999999999999999988 5899999
Q ss_pred cccccc-cCHHHHhccCCCC-------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 666 TSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 666 ~pwi~~-~TIreNIlfg~~~-------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
++-++. -||+|||.||.+. .+++..+.++.++|.++-+..| ..||||||||||||||+..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 999887 7999999998764 2467889999999998888777 57999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccc-cccCCeEEEEeC--CeEE
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEG--GQIT 797 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~--G~I~ 797 (1059)
|+|+||||||||||+.|..++-+ -+..+. .++|+++|||+++. +--+|+|+||.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~-~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQD-ELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999998644 444433 57999999999976 677999999999 4453
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-42 Score=364.09 Aligned_cols=203 Identities=27% Similarity=0.411 Sum_probs=175.8
Q ss_pred EEEEeeeEeeCCC--CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~--~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
|+++++++.|... ...++|+|+||+|++||..+|+|+||+|||||++++-|+-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEcccccccc-cCHHHHhccCCC---CC-H---HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 --SIAYVSQTSWIQS-GSIRDNILYGKP---MD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 --~iayv~Q~pwi~~-~TIreNIlfg~~---~~-~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
+|++++|++-+++ .|+.|||.|..+ .+ + +|..+.++..+|.+....- ..+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 4999999999998 899999999654 22 2 4445555556666544443 479999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHH
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
+||||+..+|+|+|.||||||||++|.++|.+ ++.+. --|-|+++|||.++.++. ||++.||++|+++|+|+-.|+
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999974 55443 358899999999999876 999999999999999999998
Q ss_pred HHcC
Q 001528 806 LLAG 809 (1059)
Q Consensus 806 ~~~~ 809 (1059)
..+.
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8654
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-41 Score=364.82 Aligned_cols=212 Identities=30% Similarity=0.510 Sum_probs=195.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+. ..++++|+||++++||.++|+||+|||||||+++|.|+.+|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 24699999999999999999999999999999999999999999999987 39
Q ss_pred EEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 661 ayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
+|++|+++++++|++||+.++.+ ..+++..++++.+++.+.++.+|.|+++.++.+..+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998865 35677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++||||||++||+.+.+.+. +.+....+++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999875 567666678999999999999989999999999999999999888754
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-41 Score=365.27 Aligned_cols=217 Identities=32% Similarity=0.548 Sum_probs=197.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+.. +.++++|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 24799999999999999999999999999999999999999999999987 389
Q ss_pred EEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++|++++++.|++||+.++.+ .+++++.+.++.+++.+.++.+|.|.++..+.+..+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 466778888899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHH
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~ 813 (1059)
+||||||++||+.+.+.+. +.+....+++|+|++||+++.++.||+|++|++|++++.|+.+++.++.+.|.
T Consensus 160 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQ-AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 9999999999999999875 67777667999999999999998899999999999999999999887655543
No 58
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-41 Score=364.79 Aligned_cols=218 Identities=32% Similarity=0.565 Sum_probs=197.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+.+ .++++|+||+|++|++++|+|++|||||||+++|.|+.+|.+|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 289
Q ss_pred EEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++|+|+++++|++||+.++.+ .+++...+.++.+++.+.++.+|.|++|.++.+..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998764 456667888999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHH
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l 815 (1059)
+||||||++||+++.+++. +.+....+++|+|++||+++.+..||++++|++|++++.|+.+++.+....+...
T Consensus 159 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHH
Confidence 9999999999999999875 5676665689999999999999889999999999999999999988766555443
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.7e-41 Score=365.86 Aligned_cols=220 Identities=32% Similarity=0.525 Sum_probs=197.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|+++.|+..++.++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999653335799999999999999999999999999999999999999999999987 399
Q ss_pred EEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++|++++++.|++|||.++.+ ..+++..+.++.+++.+.++.+|.|.++..+.+..+||||||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998765 356677788899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHH
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l 815 (1059)
+||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+.+++......+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~-~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQ-EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHH
Confidence 9999999999999999875 5666655789999999999998899999999999999999999987665444443
No 60
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.9e-41 Score=360.91 Aligned_cols=206 Identities=28% Similarity=0.446 Sum_probs=191.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.. ++++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999643 35799999999999999999999999999999999999999999999877 38
Q ss_pred EEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 661 ayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
+|++|+|.++++|++|||.+..+.++++..++++..++.+.+..+|.|++|..++++.+||||||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998777778888999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
+||||||++||+.+.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999998865 56776667899999999999999999999999999998875
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-41 Score=347.69 Aligned_cols=200 Identities=31% Similarity=0.433 Sum_probs=176.6
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
|+|+|+++.|. +..+++|+||+|++||+++++|||||||||+|+.|.|+++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 35799999999999999999999999999999999999999999999998 599
Q ss_pred EEcccccccc-cCHHHHhccCC---CCCH----HHHHHHHHHcCCch--HHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDK--DINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~---~~~~----~~y~~vl~ac~L~~--di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
||-|+.-||. -||.|||.+-- .+++ +|.++.++..+|++ .....| ..|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999985 69999998643 2554 56677888888875 455555 56999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||+..+|+|+|+||||||||+-+.+++ |+-+..+ .-+||+|+|||.++. ++-||+|.+|++|+|++.|+++|++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQL-QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999986 4445433 348999999999976 788999999999999999999999986
Q ss_pred C
Q 001528 809 G 809 (1059)
Q Consensus 809 ~ 809 (1059)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-40 Score=327.10 Aligned_cols=199 Identities=30% Similarity=0.434 Sum_probs=176.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
+.++++.|+|... =-..+++|++||.+||+|||||||||||++|.|+..|.+|+|.++| -++.+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 4678899999642 1368899999999999999999999999999999999999999998 39999
Q ss_pred cccccccc-cCHHHHhccCCC-------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~-------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
.|+.-+|. -||++||-+|.. .++++++.++...+|....+.|| ..||||||||+||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 99999996 599999999963 35688999999999999999999 469999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcCc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~~ 810 (1059)
++.+|++|||||||||+.-..... ..+.++ -++.|+++|||+++-+ +.+|+++++++|||.++|+-+|+.+..+
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEML-ALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999988754 344443 3688999999999875 5699999999999999999999886543
No 63
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=351.37 Aligned_cols=199 Identities=33% Similarity=0.576 Sum_probs=174.6
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iayv 663 (1059)
.|+++|++|+|+.+ ++|+||||++++|++++|+||+|||||||+++|+|+.+|.+|+|.+.| +||||
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 58999999999642 699999999999999999999999999999999999999999999876 49999
Q ss_pred ccc---ccccccCHHHHhccCCCC-----------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 664 SQT---SWIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 664 ~Q~---pwi~~~TIreNIlfg~~~-----------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
||. .|=|..||+|=+..|... |.++.+++++..++.+... -.|| .|||||+|||-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHHHHH
Confidence 995 488999999999987431 3588999999999985433 2344 59999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||||+.++||+++|||||++||+++++.++ +.+.++. +|+|+++|||+++.+ ..+|+|+.| |+++...|+.+|...
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999987 5676654 499999999999986 569999999 567889999999875
Q ss_pred c
Q 001528 808 A 808 (1059)
Q Consensus 808 ~ 808 (1059)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 64
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-40 Score=367.03 Aligned_cols=201 Identities=31% Similarity=0.437 Sum_probs=180.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iay 662 (1059)
.|+++|++.+|... .+++|+|++|++||+++++|||||||||||++|.|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 299999999999999999999999999999999999999999999998 4999
Q ss_pred Eccccccccc-CHHHHhccCCCCC-------HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQSG-SIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~~-TIreNIlfg~~~~-------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
|+|+.-|+.- ||+|||.||.... ++|+++|++..+|++.++..| ..||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999999975 9999999997642 578999999999999988776 67999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcc-ccccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~-~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
.++|+++|||||+|+||++....+-. -|+.+. -+.|+|.|||+.. .+.-||+|.||++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~-ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRS-EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHH-HHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999887643 354432 3689999999975 47789999999999999999999998653
No 65
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6e-40 Score=352.86 Aligned_cols=205 Identities=39% Similarity=0.614 Sum_probs=187.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|+++.|+.. ..++++|+||+|++|++++|+||+|||||||+++|.|+.+|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 25799999999999999999999999999999999999999999999987 38
Q ss_pred EEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 661 ayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
+|++|++++++.|++||+.++.+ .+++++.+.++.+++.+.++.+|.|++|.+.++..+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988754 45677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEec
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 800 (1059)
++||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999875 5676665568999999999998889999999999998764
No 66
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-41 Score=337.00 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=182.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCc-----cEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~-----G~I~v~g--------- 658 (1059)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||+|+++-+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999973 569999999999999999999999999999999999888776 9999988
Q ss_pred ------eEEEEcccccccccCHHHHhccCCCC---C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~~---~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
+||.|.|.|--|..||.|||.||... . +|.+++.++.++|.+.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999999542 1 3668889999999887653 34467889999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||+.-+|+|+||||||||||+-+..+| ++.|.++.++-|+|+|||+++-. +-+|+...+-+|+++|.|+-++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999987 78888888899999999999875 5579999999999999999888
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 7644
No 67
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-40 Score=368.50 Aligned_cols=206 Identities=23% Similarity=0.415 Sum_probs=174.7
Q ss_pred CCcEEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------
Q 001528 592 DRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------- 658 (1059)
+..|+++|++|+|+... +.++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34689999999997421 24699999999999999999999999999999999999999999999874
Q ss_pred ------------------eEEEEcccc--cccccCHHHHhccCCC---CCHH----HHHHHHHHcCCchHHhcCCCCCCc
Q 001528 659 ------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLT 711 (1059)
Q Consensus 659 ------------------~iayv~Q~p--wi~~~TIreNIlfg~~---~~~~----~y~~vl~ac~L~~di~~Lp~Gd~T 711 (1059)
.|+||+|+| ++|+.|++|||.||.. .+++ +..+.++.++|.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 279999998 7999999999998742 2332 3444555555432 2
Q ss_pred cccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccc-ccCCeEE
Q 001528 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRIL 789 (1059)
Q Consensus 712 ~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l-~~aD~Ii 789 (1059)
..+.++.+||||||||++||||+.++|+|+|||||||+||+.+.+.+. +.+..+ .+|+|+|+|||+++.+ ..||+|+
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 245678899999999999999999999999999999999999999876 566554 3689999999999976 5699999
Q ss_pred EEeCCeEEEecChHHHHHc
Q 001528 790 VLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 790 vl~~G~I~e~Gt~~eL~~~ 808 (1059)
+|++|++++.|+++|+.+.
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998764
No 68
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-39 Score=341.52 Aligned_cols=192 Identities=28% Similarity=0.418 Sum_probs=165.3
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++..|..+. ..++|+++||+|++||++||+|||||||||||+.|-|...|++|+|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999886432 24799999999999999999999999999999999999999999999988
Q ss_pred --eEEEEccccccc-ccCHHHHhcc----CCCC---CHHHHHHHHHHcCCchHHh-cCCCCCCccccCCCCCCChHHHHH
Q 001528 659 --SIAYVSQTSWIQ-SGSIRDNILY----GKPM---DKARYDKAIKACALDKDIN-NFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 --~iayv~Q~pwi~-~~TIreNIlf----g~~~---~~~~y~~vl~ac~L~~di~-~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.||||.|+..+. +-|++|||.+ .... .+++.++.++..+|.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 399999998866 5699999984 3322 2566777888888876655 444 6799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccccccCCeEEEEeCCeEEE
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 798 (1059)
||+|||+..+|+|++.||||++||.++++.|++ .+... -.|+|+|+|||+......||+++.|+||++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999874 55554 34899999999999999999999999999543
No 69
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.8e-40 Score=349.52 Aligned_cols=200 Identities=26% Similarity=0.424 Sum_probs=176.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++|+|+ ++++|+|+||+|++||+++|+||+||||||||++|.|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999997 35899999999999999999999999999999999999999999999999 59
Q ss_pred EEEcccc-cccccCHHHHhccCCC--------C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 661 AYVSQTS-WIQSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 661 ayv~Q~p-wi~~~TIreNIlfg~~--------~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
|||||++ .-++-|++|=+++|+- . |++...++++.+++.+..+. .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 5667899999999962 1 34567788999998775442 2346999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHH
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
.||||+.++|+|++||||||+||.+..-++++ .++.+ .+|+|+|+|+|.+.. ++.||++++|++|+|+.+|+++|.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999875 45554 358999999999977 788999999999999999999998
Q ss_pred HHc
Q 001528 806 LLA 808 (1059)
Q Consensus 806 ~~~ 808 (1059)
+..
T Consensus 227 lT~ 229 (258)
T COG1120 227 LTE 229 (258)
T ss_pred cCH
Confidence 754
No 70
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.9e-40 Score=371.38 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=175.1
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
|+++|++++|+..+ ..++|+|+||+|++||.++|+|++|||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 34799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
+|+|++|++.++. .|++|||.|+.. .+ +++..++++..+|.+..+. ....|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 3899999999995 799999987542 22 2456677888887654443 34689999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+.++|+++|||||||+||+.+.+.+. +.++... .|+|+|+|||+++.+++ ||+|++|++|+|++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999886 5666654 38999999999999855 9999999999999999999997
Q ss_pred Hc
Q 001528 807 LA 808 (1059)
Q Consensus 807 ~~ 808 (1059)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 64
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-39 Score=333.32 Aligned_cols=210 Identities=27% Similarity=0.434 Sum_probs=183.8
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
...|+++++++++. ++.+++|+||+|++||.++|+|+||||||||+++|+|+..|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999995 45799999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEccccccccc-CHHHHhccCC----CCCHHHHH----HHHHHcCCchH-HhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMDKARYD----KAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~-TIreNIlfg~----~~~~~~y~----~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
+++++.|+.-||+. ||+||+.|-- ..+++.++ .-+++++|..+ .+.+| ..||||.+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 49999999999976 9999999842 24555544 45788999988 67777 56999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecCh
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~ 802 (1059)
.|+|||||+..||+|+++|||||+||+.+... |++.|+.+. -|-|+|+|||+++.+ .-||+|+++.||+|+..||+
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~-~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGV-IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHH-HHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999986 578886543 488999999999876 55799999999999999999
Q ss_pred HHHHHcCchH-HHHH
Q 001528 803 QELLLAGTAF-EQLV 816 (1059)
Q Consensus 803 ~eL~~~~~~~-~~l~ 816 (1059)
+|+.+.+..+ ++++
T Consensus 231 ~el~~sd~P~v~qf~ 245 (263)
T COG1127 231 EELLASDDPWVRQFF 245 (263)
T ss_pred HHHHhCCCHHHHHHh
Confidence 9999876543 4443
No 72
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.7e-40 Score=373.36 Aligned_cols=188 Identities=27% Similarity=0.376 Sum_probs=163.3
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEEEEcccccccc-
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~iayv~Q~pwi~~- 671 (1059)
.++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5689999999999999999999999999999999999999999999987 4999999999997
Q ss_pred cCHHHHhccCCCC---C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEc
Q 001528 672 GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1059)
Q Consensus 672 ~TIreNIlfg~~~---~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1059)
.||+|||.|+.++ + +++..++++..+|+.... ....+|||||||||+||||++++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987542 2 244556666666655444 445589999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 745 DPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
|||||||+++.+++.+. +..+ ..++|+|+|||+++.+ +.||+|++|++|++++.|+++|++++.
T Consensus 155 EP~saLD~~~r~~l~~~-l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDE-LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999998754 4443 2489999999999975 669999999999999999999998753
No 73
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=371.23 Aligned_cols=202 Identities=30% Similarity=0.443 Sum_probs=177.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iay 662 (1059)
.++++|++++|+. +.++|+|+||++++||+++|+||+|||||||+++|.|+.+|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24799999999999999999999999999999999999999999999988 3999
Q ss_pred Ecccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
|+|++.+|. .|++|||.|+.. .+ +++..++++..+|.+..+..| .+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999995 699999998753 22 356778888889877666555 48999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
+++|+++|||||||+||+++.+++.+ .++.+.+ |.|+|+|||+++.+ ..||+|++|++|++++.|+++|+..+.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRL-EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999998764 5655543 79999999999865 569999999999999999999998653
No 74
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-39 Score=353.14 Aligned_cols=200 Identities=27% Similarity=0.411 Sum_probs=171.1
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+. .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999953 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccccccccc-CHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 SIAYVSQTSWIQSG-SIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~-TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.|+||+|++.+++. |++||+.++.. .+ +++..++++.++|.+.... +..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 28999999999886 99999987632 22 2345667777777554332 33579999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+.++|+|+||||||++||+++.+.+. +.+.... .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999876 5666654 38999999999998754 9999999999999999999886
Q ss_pred HcC
Q 001528 807 LAG 809 (1059)
Q Consensus 807 ~~~ 809 (1059)
...
T Consensus 226 ~~~ 228 (235)
T cd03261 226 ASD 228 (235)
T ss_pred CCC
Confidence 543
No 75
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-39 Score=346.56 Aligned_cols=198 Identities=42% Similarity=0.796 Sum_probs=180.6
Q ss_pred EEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------
Q 001528 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1059)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------------- 658 (1059)
.+.|++|+|+.+ .++++|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 5799999999999999999999999999999999999999999998865
Q ss_pred eEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
.++|++|+|.+++.|++|||.++.++++++.+++++++++.+.++.+|.|++|.++.+..+||||||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999999999999999998777777888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHH-HHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCe
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~-~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 795 (1059)
+++||||||++||.++.+.+.+. .+.... +++|+|++||+.+.++.||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999887653 444332 4789999999999999999999999984
No 76
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=363.17 Aligned_cols=202 Identities=30% Similarity=0.432 Sum_probs=179.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~ia 661 (1059)
..++++|++.+|. +..+++|+||+|++||++++.|||||||||+|++|.|+.+|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4689999999997 35899999999999999999999999999999999999999999999998 499
Q ss_pred EEcccccccc-cCHHHHhccCCC----CC-H---HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGKP----MD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~~----~~-~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|.|+--||. -||+|||.||.. .. + +++.++++..+|.+.-... ...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHHHH
Confidence 9999999995 699999999976 12 2 4889999999998865544 4679999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
|+..+|+++|||||+||||.+...++-.+ ++.+ -.|.|.|+|||+-+. +.-+|+|.||++|+|.+.||++|+..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999886443 4332 249999999999755 8999999999999999999999998764
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-39 Score=358.92 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=177.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.....++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999643234699999999999999999999999999999999999999999999987 38
Q ss_pred EEEccccc--ccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~pw--i~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+||+|+|. +++.|++|||.|+.. .+ +++..++++..+|.+..+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 667899999998742 23 356788888888876655443 68999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++++|+++||||||++||+.+.+.+. +.+..+. .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999998875 5676654 38999999999999888999999999999999999988755
No 78
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=5.6e-36 Score=350.19 Aligned_cols=436 Identities=19% Similarity=0.266 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH---HH---HHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q 001528 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTG---EI---VNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1059)
Q Consensus 340 ~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G---~i---vnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L 412 (1059)
+..+++..+.|..|...+.+|-+.-....+-. ..| .+ =+++..|+..+.+... ....+....++++.-..+|
T Consensus 108 ~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 108 WLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999998766433222 222 12 2488889887766432 2333334445555555566
Q ss_pred HHHHHHHH---------HHHHH--HHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhchHH
Q 001528 413 FGVVGLGA---------LPGLV--LFLICGLLNVP----FAKILQKCQSEFMIA-QDERLRSTSEILNNMKIIKLQSWEE 476 (1059)
Q Consensus 413 ~~~lg~~~---------l~gl~--~~~~~~~l~~~----~~~~~~~~~~~~~~~-~d~r~~~~~E~L~~ik~IK~~~wE~ 476 (1059)
|.+.|..+ +.|.. ++++.+++... ++|...+..-+..+. .|=|.. ...+.++...|-+|+-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~-Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS-LVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH-HHHHHhhHHHHHHhcCcH
Confidence 65444221 11211 11222222222 333333332222222 233333 455667788888998876
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 001528 477 KFKSLIESRREKEFKWLSEA----QLRKAYGTVIYW---MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1059)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~----~~~~~~~~~~~~---~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl 549 (1059)
.=++++++.-..=++..++. .....++....+ ..|.++.+-- +. .+.++.+.+.++...|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f-~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YF-SGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hh-cCcChHHHHHHHHHHHHHHHHHH
Confidence 54444433222211111111 011111211222 2222222211 22 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCchhhh----c--cccCCCCcEEEEeeeEeeCCCCCCCcccceeeee
Q 001528 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDDVRR----I--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1059)
Q Consensus 550 ~~lp~~i~~~~~a~vs~~Ri~~fL~~~e---~~~~~~~~----~--~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i 620 (1059)
+.+-+....+.+-+.+..|+.+|-..-| .++....+ . .... +..|+++|++..-|++ .+.++++|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCC--Ceeeccceeee
Confidence 9999999999999999999999974321 11100000 0 0111 4679999999997653 48999999999
Q ss_pred cCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccccCHHHHhccCCC---CCHHHHHHHHHH
Q 001528 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1059)
Q Consensus 621 ~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~~TIreNIlfg~~---~~~~~y~~vl~a 695 (1059)
++|+.+.|.|+||||||||+++|.|..|--+|+|..+. .+-|+||.|++-.||+||-|++-++ ++++++.+++..
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999873 4899999999999999999998653 789999999999
Q ss_pred cCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEE
Q 001528 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1059)
Q Consensus 696 c~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlV 775 (1059)
|+|.+-.+.|.+-++ =..-|||||||||++||.++++|++++|||+|||||.+++..++ +.+++.+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~-q~l~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHH-HHHHhhCCCCEEEEe
Confidence 999999999875444 45789999999999999999999999999999999999999987 468888999999999
Q ss_pred cCCccccccCCeEEEEe
Q 001528 776 THQVEFLSEVDRILVLE 792 (1059)
Q Consensus 776 TH~l~~l~~aD~Iivl~ 792 (1059)
.||....+..++.+-++
T Consensus 571 ~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 571 GHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccchhhHHHHhhheeec
Confidence 99999887777766554
No 79
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=344.13 Aligned_cols=201 Identities=32% Similarity=0.465 Sum_probs=175.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.|.++|++..|+. .++++|||++|+.||++|+.|||||||||||++|.|+..|++|+|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 3678888888864 4789999999999999999999999999999999999999999999988 4
Q ss_pred EEEEccccccc-ccCHHHHhccCCC---------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 660 IAYVSQTSWIQ-SGSIRDNILYGKP---------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 660 iayv~Q~pwi~-~~TIreNIlfg~~---------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
||||.|+.-+| +.||.|||.||.+ -.+.+..+.++.|.|+.--+.-| ..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999887 5799999999973 13467888899999876555444 689999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+..+|++||||||++|||+++.+.+ ++-+.... -|-|+++|||+.+. ++.||+|++|+||+|.+.|+++|..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999875 44454433 37899999999976 7889999999999999999999997
Q ss_pred HcC
Q 001528 807 LAG 809 (1059)
Q Consensus 807 ~~~ 809 (1059)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 653
No 80
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-39 Score=344.68 Aligned_cols=201 Identities=29% Similarity=0.498 Sum_probs=180.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++|+|+++ .++|+|+|++|++|+.++|+|++|||||||++.+.|.++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999765 6899999999999999999999999999999999999999999999877 3
Q ss_pred EEEEcccc--cccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~p--wi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
|+||.|+| .+|..||.|.|.||.+ .++ ++.+++++.|++.+..+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 7999999999999965 333 56888999999988766554 6899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C-CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHH
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|.++..+|+++|||||||+||+...+.+. +.+..+. + ++|+|++||+++.+.. ||++++|++|+++.+|+++|+.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELL-ELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999986 4565553 3 5899999999999776 99999999999999999988876
Q ss_pred c
Q 001528 808 A 808 (1059)
Q Consensus 808 ~ 808 (1059)
.
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.8e-39 Score=349.37 Aligned_cols=198 Identities=31% Similarity=0.455 Sum_probs=171.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC-----CCCccEEEEcC-----------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~-----~~~~G~I~v~g----------- 658 (1059)
++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.+ +|.+|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999963 46999999999999999999999999999999999999 99999999876
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|++.+++.|++||+.++.. . + +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999999999999999987532 1 1 3466778888888765554332 5789999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
|++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+.+|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999876 56766655589999999999865 5999999999999999987653
No 82
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-39 Score=366.16 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=176.5
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~ia 661 (1059)
..++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+.+|++|+|.++| +|+
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 4689999999999999999999999999999999999999999999987 499
Q ss_pred EEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
||+|++.+|. .|++|||.|+.. .+ +++.+++++..+|.+..... ...|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 599999999743 22 35667777787876544333 46899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
++++|+++|||||||+||+.+.+.+. +.++.+.+ ++|+|+|||+.+.+ .-||+|++|++|+|++.|+++|+..+.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999875 56666543 79999999999885 569999999999999999999998653
No 83
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.8e-39 Score=345.63 Aligned_cols=204 Identities=29% Similarity=0.458 Sum_probs=182.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
.+.++++|++++|+.....++|+|+||+|++||+++|+||+|||||||+++|.|+.+|.+|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999753234799999999999999999999999999999999999999999999987
Q ss_pred eEEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
.++|++|++.+++.|++||+.++.. .+.+++.+..+...+++.++.+|.|.++.+.++..+|||||||||+||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998754 334445555666778889999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQ-QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999875 567666667999999999999988999999999975
No 84
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=358.30 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=174.9
Q ss_pred cEEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
.++++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996432 24799999999999999999999999999999999999999999998876
Q ss_pred --eEEEEcccc--cccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 --~iayv~Q~p--wi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
+|+||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+....+...||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 6889999999998642 232 35677788887751 112335567899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
++||||+..+|+++||||||++||+++.+.+. +.+.++. .|+|+|+|||+++.+ ..||+|++|++|++++.|+.+|
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999876 5676654 389999999999987 4699999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8654
No 85
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-38 Score=339.19 Aligned_cols=189 Identities=25% Similarity=0.482 Sum_probs=167.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
+.++++|++++|+.. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|.+|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 24799999999999999999999999999999999999999999999987 4
Q ss_pred EEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
|+||+|+|.++++|++|||.+..++++++..+.++ ++++..+|||||+||++||||++++|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998766565555444333 346788999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
++||||||++||+++.+.+. +.++...+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQ-KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999998765 56766667899999999999988899999999999998876
No 86
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-39 Score=350.19 Aligned_cols=204 Identities=26% Similarity=0.356 Sum_probs=177.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC---CCccEEEEcC------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~---~~~G~I~v~g------------ 658 (1059)
.|+++|+++.|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++ |.+|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 479999999999999999999999999999999999974 6899999987
Q ss_pred -eEEEEcccccccccCHHHHhccCCC---------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 -SIAYVSQTSWIQSGSIRDNILYGKP---------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 -~iayv~Q~pwi~~~TIreNIlfg~~---------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
.++|++|+|.+|+.|++|||.++.. .++++..++++.++|.+++..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 3899999999999999999987631 1234567888998887655432 3456789999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
+||||++++|+++||||||++||+++.+.+. +++....+++|+|++||+++.+. .||+|++|++|++++.|+.+|+..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIE-ELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999988765 67777667999999999999875 599999999999999999999875
Q ss_pred c
Q 001528 808 A 808 (1059)
Q Consensus 808 ~ 808 (1059)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 87
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-39 Score=357.36 Aligned_cols=203 Identities=24% Similarity=0.388 Sum_probs=175.0
Q ss_pred EEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
++++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 14699999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ---~iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.|+||+|+| .+++.|++|||.|+.. .+ +++..++++.++|.+++. ..+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 6889999999998742 22 245677888888865442 2345689999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|++||||++++|+++|||||||+||+++.+.+. +.++.+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999876 5666653 3899999999999875 59999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98754
No 88
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-38 Score=365.87 Aligned_cols=202 Identities=28% Similarity=0.370 Sum_probs=178.4
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~ia 661 (1059)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|.|+.+|++|+|.++| .++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45899999999963 4689999999999999999999999999999999999999999999988 399
Q ss_pred EEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
||+|++.+|. .|++|||.|+.. .+ +++..++++..+|.+..+..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999995 499999999753 22 346778888888887776665 5899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
++++|+++|||||||+||+++...+. +.+..+. .|+|+|+|||+.+. ...||+|++|++|+|++.|+++|+..+.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999998865 5666654 38999999999987 4669999999999999999999998754
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-38 Score=346.77 Aligned_cols=199 Identities=30% Similarity=0.420 Sum_probs=170.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 38999
Q ss_pred cccccccc-cCHHHHhccCCCC-------C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 664 SQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~~-------~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|+|.++. .|++|||.++... + +++..++++..+|.+... .+..+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHH
Confidence 99999885 6999999986421 2 234556677777654333 34468999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999875 5676654 3799999999999764 5999999999999999999988653
No 90
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=355.43 Aligned_cols=203 Identities=21% Similarity=0.398 Sum_probs=174.9
Q ss_pred EEEEeeeEeeCCCCC--CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~--~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
|+++|++|+|+.... .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ---~iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++||+|+| .+++.|+.|||.|+.. .+ ++++.++++..+|.+++. .....+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 7999999999998743 22 245777788888754332 2445789999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|++||||++.+|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+. .||+|++|++|++++.|+++|
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999998876 4665543 5899999999999874 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.++
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.4e-38 Score=348.34 Aligned_cols=203 Identities=29% Similarity=0.429 Sum_probs=175.1
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC-----ccEEEEcC-----------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~-----~G~I~v~g----------- 658 (1059)
++++|++++|+. .++++|+||+|++||+++|+|++|||||||+++|.|.++|. +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999963 36999999999999999999999999999999999999998 99998876
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|+||++++++.|++||+.++.. .+ +++.+++++..+|.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999999999999999987532 12 245667777888764442 1234556799999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
|++||||++++|+++||||||++||+++.+.+. +++....+++|+|+|||+++.+. .||+|++|++|++++.|+++|+
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999875 67777666799999999999875 5999999999999999999998
Q ss_pred HHc
Q 001528 806 LLA 808 (1059)
Q Consensus 806 ~~~ 808 (1059)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 653
No 92
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=329.27 Aligned_cols=209 Identities=25% Similarity=0.429 Sum_probs=176.1
Q ss_pred cEEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
.++++|.++.|+... ..++|+||||+|.+||..+|||+||||||||.++|+|..+|.+|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997531 12599999999999999999999999999999999999999999999998
Q ss_pred eEEEEcccccc-c--ccCHHHHhcc-----CCCCCHHHHHHHHHHcCCchHH-hcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 SIAYVSQTSWI-Q--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDI-NNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 ~iayv~Q~pwi-~--~~TIreNIlf-----g~~~~~~~y~~vl~ac~L~~di-~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.|-+|+|+|.= + .-||++-|.= |.+-.+++..++++..+|.+.. ...| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 38999999972 2 3577777642 2223457789999999997654 4455 569999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+..+|+++||||||||||+.+...|++ .+..+.+ +-|.|+|||+++.+.+ ||+|.||++|+|+|.++-+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 9999999999999999999999999999984 5655544 4599999999999865 9999999999999999999998
Q ss_pred Hc-CchHHH
Q 001528 807 LA-GTAFEQ 814 (1059)
Q Consensus 807 ~~-~~~~~~ 814 (1059)
.. ...|.+
T Consensus 231 ~~~~h~ytr 239 (252)
T COG1124 231 SHPSHPYTR 239 (252)
T ss_pred cCCccHHHH
Confidence 76 344543
No 93
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=349.47 Aligned_cols=205 Identities=24% Similarity=0.394 Sum_probs=176.5
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g--------- 658 (1059)
..++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 469999999999999999999999999999999999874 5899998876
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC---C-----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~---~-----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++.+++.|++|||.++.. . .+++++++++.+++.+++.. .......+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHH
Confidence 3899999999999999999987531 1 23566777888887654432 3456678999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++.+|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999998875 56777666899999999999875 59999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 98754
No 94
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=351.75 Aligned_cols=203 Identities=26% Similarity=0.441 Sum_probs=178.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.. ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++| .|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999632 35699999999999999999999999999999999999999999999988 38
Q ss_pred EEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++|+| .+++.|++|||.++.. .+ +++..++++.++|.++++..| .+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5778899999998632 22 255788888899987777655 48999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
||+.++|+|+||||||++||+.+.+.++ +.+.++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999999999999876 56766543 79999999999998889999999999999999999987653
No 95
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=347.67 Aligned_cols=205 Identities=29% Similarity=0.384 Sum_probs=175.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
..++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999963 4699999999999999999999999999999999999987 489998865
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++.+++.|++|||.|+.. .+ +++..++++.+++.+.+ ++.. ..+..+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHH
Confidence 3899999999999999999998642 12 24556677777765433 2222 33578999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999876 56766666899999999999875 59999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98754
No 96
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.5e-38 Score=362.85 Aligned_cols=201 Identities=30% Similarity=0.399 Sum_probs=176.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iay 662 (1059)
.++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+.+|++|+|.++| .|+|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999988 3999
Q ss_pred Ecccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
|+|++-+|. .|++|||.|+.. .+ +++.+++++..+|.+..+ .+..+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999999743 22 356777888887766544 34568999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
.++|+++|||||||+||+++.+++. +.++.+.+ +.|+|+|||+.+.+ .-||+|++|++|++++.|+++|+.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999875 55665543 79999999999975 569999999999999999999998753
No 97
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=353.78 Aligned_cols=203 Identities=22% Similarity=0.419 Sum_probs=172.4
Q ss_pred EEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
++++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 24699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcccc--cccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ---~iayv~Q~p--wi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.|+||+|+| .+++.|++|||.|+.. ++. ++..++++.++|..+. ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 379999998 6888999999998742 233 3445566666654222 22456789999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|++||||++.+|+|+||||||++||+.+.+.+. +.++.+. +|+|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999875 5676653 4899999999999874 68999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 98
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=361.25 Aligned_cols=200 Identities=32% Similarity=0.457 Sum_probs=174.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .|+||
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 49999
Q ss_pred cccccccc-cCHHHHhccCCC-------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 664 SQTSWIQS-GSIRDNILYGKP-------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~-------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++.+|. .|++|||.|+.. .+ +++..++++..+|.+..+.. ...|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHH
Confidence 99999997 599999998743 12 24666778888876544433 468999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||+.++|+++|||||||+||+++.+++. +.++.+.+ ++|+|+|||+++.+ .-||+|++|++|+|++.|+++|+..+
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999875 56666543 78999999999985 55999999999999999999999865
Q ss_pred C
Q 001528 809 G 809 (1059)
Q Consensus 809 ~ 809 (1059)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-38 Score=340.41 Aligned_cols=198 Identities=24% Similarity=0.449 Sum_probs=170.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|+++.|+.. ..++|+|+||++++||.++|+||+|||||||+++|.|.++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 25799999999999999999999999999999999999999999999887 3899
Q ss_pred Eccccccc-ccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~-~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++|++-++ +.|++||+.++.. .+ +++++++++.++|.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999888 6799999986421 22 245677888887754432 23457999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
.++|+++||||||++||+.+.+++. +.+....+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999875 567766667999999999999864 999999999999999998875
No 100
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=340.06 Aligned_cols=191 Identities=30% Similarity=0.428 Sum_probs=164.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999976 38999
Q ss_pred cccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
||+|.++. .|++||+.++.. .+ +++++++++.+++.+..... ..+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99998885 699999987632 12 24567778888776655443 3689999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
++|+++||||||++||+++.+.+. +.+.... .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999876 5676653 3899999999999865 59999999999998865
No 101
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-38 Score=344.30 Aligned_cols=198 Identities=23% Similarity=0.380 Sum_probs=168.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 28
Q ss_pred EEEccccccccc-CHHHHhccCCCC-------------C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKPM-------------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~~-------------~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
+|++|++.++.+ |++|||.++... + +++..++++..++.+ ....+...|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 999999999886 999999876421 1 223445555555433 23455678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
|||||++||||+.++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.+ ||+|++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 9999999999999999999999999999999999876 4565543 68999999999999855 9999999999999999
Q ss_pred ChHHHHH
Q 001528 801 NYQELLL 807 (1059)
Q Consensus 801 t~~eL~~ 807 (1059)
+++++..
T Consensus 226 ~~~~~~~ 232 (236)
T cd03219 226 TPDEVRN 232 (236)
T ss_pred CHHHhcc
Confidence 9988764
No 102
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=319.83 Aligned_cols=502 Identities=16% Similarity=0.161 Sum_probs=322.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001528 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQR-HCFFGSRRSG 346 (1059)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~ 346 (1059)
...++|.+++.++....+.+.....+. .++-.+-++..+..+.....+.+++++.+..++.+...+ ......+..-
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I 80 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFI 80 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888766655555444332 222222233222211111112223333333333332221 1112223333
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1059)
Q Consensus 347 ~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1059)
.++|. .+-+|.+.-+....++.+++.++..++.|+..|.-....+..+..+.+-++.++..|+++-+...+..++.
T Consensus 81 ~klr~----~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 81 YKLRS----EFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHH----HHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444 45577777776666777889999999999999885555555554444444555666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001528 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI-ESRREKEFKWLSEAQLRKAYG 503 (1059)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~--~f~~~i-~~~R~~El~~l~~~~~~~~~~ 503 (1059)
+++....+....++..+...+..+..|+-.+..+.+++|-|.+|+..-.. .+.+.. ...++.+-+ ..+...+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~n~f~ 232 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRANTFH 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhhhHHH
Confidence 55555666666566666666677778888899999999999999876321 222221 222222211 11111111
Q ss_pred -HHHHHHHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001528 504 -TVIYWMSPT---IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1059)
Q Consensus 504 -~~~~~~~~~---~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1059)
....|..-. ++.++.|.... .+ -+ +...+.|....+-.++.|+.++...+..+.+|.++++||.++-.+|+..
T Consensus 233 ~la~~~~ni~l~~lIGlvf~lal~-~~-w~-st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 233 LLAVNWSNIMLLGLIGLVFWLALS-LG-WA-STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hc-cc-hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 111222111 22222222211 11 11 1224444444455689999999999999999999999999985544432
Q ss_pred CchhhhccccCCCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe
Q 001528 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS 659 (1059)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~ 659 (1059)
. -.+....++-..++++|+.|+|++. .+-+..||++|++||+|-|+|.+||||||+++++.|++.|++|+|.+||.
T Consensus 310 ~--~~~~q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 310 D--FPRPQAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred c--CCCCCcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 1 1111111224579999999999764 37899999999999999999999999999999999999999999999984
Q ss_pred -------------EEEEcccccccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 660 -------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 660 -------------iayv~Q~pwi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
++-|.-|-|+|..++ -++. .+++.+.+-++.-.+..-. ++.+|--+ -..||-|||
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLStGQk 454 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLSTGQK 454 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----ccccccchH
Confidence 566677778776544 2222 4566666655555444322 23333222 256999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
.|+|+--|+.-+.|||+|||=-+-=|++=.+.-++..+ ..+ .|||++.|||+-.+...|||++.|+||+++|.
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL-p~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL-PLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh-HHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999999999999887665544 333 69999999999999999999999999999984
No 103
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=347.15 Aligned_cols=206 Identities=28% Similarity=0.417 Sum_probs=177.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g-------- 658 (1059)
...++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356899999999963 469999999999999999999999999999999999986 4799998876
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
+++|++|++.+++.|++||+.++.. .+ +++.+++++..++.+++. +...++..+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 3899999999999999999987632 22 245677788887755443 2345678899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999998875 56766666889999999999875 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+++...
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 998754
No 104
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2e-38 Score=362.33 Aligned_cols=202 Identities=28% Similarity=0.437 Sum_probs=177.4
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCc--cEEEEcC-----------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~--G~I~v~g-----------~ 659 (1059)
+.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 469999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 660 IAYVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 660 iayv~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
|+||+|++.+|.. |++|||.|+.. .+ +++..++++..+|.+..+..| .+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 99999998643 22 356778888888877666555 48999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC---CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE---KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~---~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||+.++|+++|||||||+||++..+.+. +.++.+.+ |+|+|+|||+.+.+ ..||+|++|++|++++.|+++|+.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMR-EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999875 45655433 78999999999885 5699999999999999999999987
Q ss_pred cC
Q 001528 808 AG 809 (1059)
Q Consensus 808 ~~ 809 (1059)
+.
T Consensus 229 ~p 230 (362)
T TIGR03258 229 AP 230 (362)
T ss_pred Cc
Confidence 53
No 105
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=350.65 Aligned_cols=198 Identities=29% Similarity=0.463 Sum_probs=174.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+. ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++| .|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4889999999963 24699999999999999999999999999999999999999999999987 38
Q ss_pred EEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++|+| .+++.|++|||.|+.. .+ ++++.++++.++|.+..+..| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998742 22 356788899999977666555 37999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHH
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
||+.++|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999875 5666553 489999999999987 56999999999999999998764
No 106
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=364.09 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=175.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iay 662 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 3889999999963 4699999999999999999999999999999999999999999999987 3999
Q ss_pred Ecccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
|+|++.+|. .|++|||.|+.. .+ +++.+++++.++|.+..+..| .+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999986 599999998743 22 356778888888876555444 57999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.++|+++|||||||+||+++.+.+. +.++.+. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999876 4566554 389999999999876 45999999999999999999999764
No 107
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=342.55 Aligned_cols=201 Identities=25% Similarity=0.389 Sum_probs=175.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999953 4699999999999999999999999999999999999999999999887 38
Q ss_pred EEEcccccccccCHHHHhccCCCC---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 661 ayv~Q~pwi~~~TIreNIlfg~~~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
+|++|++.+++.|++||+.++... ++++..+.++.+++.++.. .....+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999986432 3456777888888753322 234678999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+++||||||++||.++.+.+. +.+.... .|+|+|++||+++.+. .||+|++|++|++++.|+.+|+...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999988765 5676653 3899999999999876 4999999999999999999998754
No 108
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.3e-38 Score=344.64 Aligned_cols=198 Identities=31% Similarity=0.438 Sum_probs=169.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+. +.++|+|+||++++||+++|+||+|||||||+++|.|.++|.+|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---------------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---------------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.++|++|++.++. .|++||+.++.. .++++..++++.++|.+.+. .+..+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 2899999998886 699999987531 12345666777777654433 45678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEe
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 799 (1059)
|||||++||||++++|+++|||||||+||+++.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999998875 5676653 3799999999999974 5999999999999999
Q ss_pred cChHHHH
Q 001528 800 GNYQELL 806 (1059)
Q Consensus 800 Gt~~eL~ 806 (1059)
|+++++.
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR02315 228 GAPSELD 234 (243)
T ss_pred CCHHHhC
Confidence 9998863
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-38 Score=340.56 Aligned_cols=196 Identities=32% Similarity=0.454 Sum_probs=168.1
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------eEEEEcc
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------~iayv~Q 665 (1059)
++++|++++|+... ..++|+|+||+|++|+.++|+||+|||||||+++|.|.++|.+|+|.++| .++||+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14799999999999999999999999999999999999999999999987 4999999
Q ss_pred cccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 666 TSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 666 ~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
+|.++. .|++|||.++.. . .+++..++++..+|.+.+...| .+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHcC
Confidence 999887 799999987532 1 2356677888888876555443 57999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEe--CCeEEEecCh
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~--~G~I~e~Gt~ 802 (1059)
|+++||||||++||+.+.+.++ +.+.... .++|+|++||+++.+. .||+|++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999876 5666653 3899999999999764 599999999 7999998764
No 110
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.2e-38 Score=335.68 Aligned_cols=187 Identities=34% Similarity=0.513 Sum_probs=164.2
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEEEccc
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iayv~Q~ 666 (1059)
++|++++|+.. .++|+|+||++++||+++|+||+|||||||+++|.|.++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999631 4699999999999999999999999999999999999999999999987 48999999
Q ss_pred c--cccccCHHHHhccCCC---CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001528 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1059)
Q Consensus 667 p--wi~~~TIreNIlfg~~---~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1059)
| .+++.|++||+.++.+ .++++..++++.++|.+.....| ..||||||||++||||+..+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 8 5778999999988643 23467889999999987665554 479999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEE
Q 001528 742 LFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1059)
Q Consensus 742 lLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 797 (1059)
||||||++||+++.+.+. +.+... .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999998875 566654 46899999999999886 49999999999975
No 111
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=360.25 Aligned_cols=202 Identities=27% Similarity=0.392 Sum_probs=173.5
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++++|+... +.++|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996321 35799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
+|+|++|++.+++ .|++|||.++.. .+ +++..+.++..+|.+... ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3999999999886 699999987632 22 245566777777654433 334689999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+.++|+++|||||||+||+++.+.+. +.+.... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999876 5666653 38999999999998765 9999999999999999999998
Q ss_pred Hc
Q 001528 807 LA 808 (1059)
Q Consensus 807 ~~ 808 (1059)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 65
No 112
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.3e-38 Score=339.56 Aligned_cols=189 Identities=24% Similarity=0.432 Sum_probs=163.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+.. ..++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
.++|++|+|.++. .|++||+.++.. . .+++..++++.++|.+..+..| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 3899999999886 599999987521 1 2456788888888876555444 4799999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
|||++++|+++||||||++||+++.+.+. +.+.... +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIM-RLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999876 4665543 48999999999999864 899999999985
No 113
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.7e-38 Score=339.56 Aligned_cols=190 Identities=29% Similarity=0.445 Sum_probs=162.7
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++++|+... ..++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14799999999999999999999999999999999999999999998865
Q ss_pred --eEEEEccccccccc-CHHHHhccCCCC---C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 --SIAYVSQTSWIQSG-SIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 --~iayv~Q~pwi~~~-TIreNIlfg~~~---~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
.++|++|++.++.+ |++||+.++..+ + ++++.++++..+|.+.+. .+..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 38999999999876 999999886432 1 345677777777765443 33468999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
+||||++++|+++||||||++||+++.+.+. +.+....+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998875 56766543 8999999999998888999999999975
No 114
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-38 Score=343.54 Aligned_cols=198 Identities=30% Similarity=0.423 Sum_probs=168.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+. +.++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 14699999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---------------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---------------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.++|+||++.++. .|++||+.++.. .++++..++++..+|.+. ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 2899999998876 699999986531 113345566666666433 2345678999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEe
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 799 (1059)
|||||++||||+.++|+++|||||||+||+++.+.+. +.+.... .|+|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999876 5666553 3899999999999987 6999999999999999
Q ss_pred cChHHHH
Q 001528 800 GNYQELL 806 (1059)
Q Consensus 800 Gt~~eL~ 806 (1059)
|+++++.
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9998864
No 115
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-38 Score=350.24 Aligned_cols=198 Identities=28% Similarity=0.396 Sum_probs=170.7
Q ss_pred EEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------
Q 001528 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1059)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------------- 658 (1059)
.++|++..|+. .++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 35577777753 4689999999999999999999999999999999999999999999866
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
+++|++|++.+++ .|++|||.++.. + .++++.++++.++|.+.+...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 3899999999984 699999987532 2 2356778888888877666655 3799999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|||++++|+|+||||||++||+++.+.+. +.+.... +|+|+|++||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999876 5666553 3799999999999864 599999999999999999999875
Q ss_pred c
Q 001528 808 A 808 (1059)
Q Consensus 808 ~ 808 (1059)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 4
No 116
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-38 Score=350.99 Aligned_cols=203 Identities=25% Similarity=0.417 Sum_probs=172.7
Q ss_pred EEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
|+++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCC
Q 001528 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFD 706 (1059)
Q Consensus 659 -----------------------~iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp 706 (1059)
.|+||+|+| .+++.|++|||.|+.. .+ +++..++++.++|.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL--- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---
Confidence 279999986 6788999999998742 23 345677788888753321
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-cc
Q 001528 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SE 784 (1059)
Q Consensus 707 ~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~ 784 (1059)
..+..+||||||||++||||+..+|+++||||||++||+...+.+. +.+..+. +|+|+|+|||+++.+ ..
T Consensus 160 -------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 160 -------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 2445789999999999999999999999999999999999988875 5565543 589999999999976 56
Q ss_pred CCeEEEEeCCeEEEecChHHHHHc
Q 001528 785 VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 785 aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||+|++|++|+|++.|+.+|+.++
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
No 117
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-38 Score=340.35 Aligned_cols=201 Identities=26% Similarity=0.410 Sum_probs=171.0
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++++|+... ..++|+|+||+|++||.++|+||+|||||||+++|.|.++|.+|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996421 12799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.++|+||++.++. .|++|||.++.. .+ .++..+.++..+|.+.++. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 3899999999987 699999987532 22 3455667777776554443 34689999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||+.++|+++||||||++||+.+.+.+. +.+.... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 5676654 38999999999998765 9999999999999999988875
Q ss_pred H
Q 001528 807 L 807 (1059)
Q Consensus 807 ~ 807 (1059)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 4
No 118
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=345.73 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=177.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g-------- 658 (1059)
+..|+++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 899999876
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC---C--C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~---~--~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.++|++|+|.+++.|++|||.|+.. . + +++.+++++.+++.+++. +.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 3899999999999999999987531 1 1 345677888888865443 233466789999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecC
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 801 (1059)
|||||++||||++.+|+++||||||++||+++.+.+. +++....+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999998865 67777666889999999999984 589999999999999999
Q ss_pred hHHHHHc
Q 001528 802 YQELLLA 808 (1059)
Q Consensus 802 ~~eL~~~ 808 (1059)
.+++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9998643
No 119
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-38 Score=349.14 Aligned_cols=201 Identities=25% Similarity=0.456 Sum_probs=175.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.++++|++++|+. +.++|+|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 ~iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.++|++|+| .+++.|++|||.++.. ++ +++..++++.++|.+.. ..+..+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 6789999999987532 22 35567778888876532 2457899999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
||||++.+|+|+||||||++||+.+.+.+. +.+..+.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999875 56666543 899999999999986 69999999999999999999987
Q ss_pred Hc
Q 001528 807 LA 808 (1059)
Q Consensus 807 ~~ 808 (1059)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 64
No 120
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-38 Score=345.40 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=178.5
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g-------- 658 (1059)
...++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 456999999999953 579999999999999999999999999999999999996 5799998876
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|++.+++.|++|||.++.. .+ ++++.++++.++|.+++. +..+....+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 3899999999999999999987532 12 345677788888865543 2345678899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++++|+++||||||++||..+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999988875 56776667899999999999875 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+++.+.
T Consensus 247 ~~~~~~ 252 (267)
T PRK14237 247 RNIFTN 252 (267)
T ss_pred HHHhcC
Confidence 998653
No 121
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9e-38 Score=339.56 Aligned_cols=199 Identities=24% Similarity=0.396 Sum_probs=170.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999999887 3899
Q ss_pred Ecccccc-cccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi-~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++|++.+ ++.|++||+.++.. .++ ++..+.++..+|.+ ....+..+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 57899999986532 222 23444555554433 34456678999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999876 5666654 48999999999999888999999999999999999998765
No 122
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-38 Score=337.83 Aligned_cols=196 Identities=22% Similarity=0.395 Sum_probs=168.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|.++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999887 3899
Q ss_pred Ecccccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++|++.++. .|++|||.++.. . .+++.+++++..+|.+..... ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998887 499999986421 2 234677888888886544432 357999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C-CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
+.+|+++||||||++||+++.+.+. +.+.... + ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999875 5666543 3 7899999999998764 999999999999999988764
No 123
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-38 Score=344.02 Aligned_cols=204 Identities=28% Similarity=0.426 Sum_probs=174.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC--C---CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~--~---~~G~I~v~g---------- 658 (1059)
.++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++ | ++|+|.++|
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 469999999999999999999999999999999999987 3 589998865
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC----CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~----~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++||+.|+.. .++ ++..++++..++.+++. +....++.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 3899999999999999999987642 122 23455666777655432 233466789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999998864 67877667899999999999875 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.++
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8654
No 124
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-38 Score=343.43 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=173.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CC---CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~---~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|.. +| .+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4889999999963 46999999999999999999999999999999999985 36 489999876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++||+|++.+++.|++||+.++.. . + +++..++++.+++.+.+. +....+..+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999999999999987521 1 1 234555677777654433 234566789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||+.++|+++||||||++||.++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999876 56776666799999999998864 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8754
No 125
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=346.81 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=176.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.....++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999743334699999999999999999999999999999999999999999999987 38
Q ss_pred EEEccccc--ccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~pw--i~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++|+|. +++.|+.|||.++.. .++ ++++++++.++|.+.... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 778999999987532 222 456778888888654333 3468999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
||+.++|+++||||||++||+++.+.+. +.+..+.+ |+|+|++||+++.+..||+|++|++|++++.|+++|+....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999876 56666543 89999999999998889999999999999999999987653
No 126
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-38 Score=348.20 Aligned_cols=203 Identities=22% Similarity=0.360 Sum_probs=176.9
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCc---cEEEEcC-----------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~---G~I~v~g----------- 658 (1059)
..++++|++++|+.. ..++++|+||+|++||.++|+|++|||||||+++|.|+++|.+ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999643 2469999999999999999999999999999999999999998 8999877
Q ss_pred --eEEEEccccc--ccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 --~iayv~Q~pw--i~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|+|. +++.|++|||.|+.+ .++ +++.++++.++|.+.....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 3899999984 678999999998743 233 45677888888876655544 6899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
++||||++++|+++||||||++||+.+.+.+. +.+.... .|+|+|++||+++.+..||+|++|++|++++.|+.+++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQIL-KLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999876 5666654 38999999999999888999999999999999999988
Q ss_pred HHc
Q 001528 806 LLA 808 (1059)
Q Consensus 806 ~~~ 808 (1059)
.+.
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 653
No 127
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=343.48 Aligned_cols=204 Identities=25% Similarity=0.428 Sum_probs=175.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC---CCC--CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe---~~~--~~G~I~v~g---------- 658 (1059)
.++++|+++.|+. .++|+|+||++++||.++|+|++|||||||+++|.|+ +++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5789999999963 4699999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC----C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~----~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|+||++.+++.|++|||.++.. . .+++.+++++.++|.++++ +....++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999999999999999987532 1 2245677788888765543 233466789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999875 56776667899999999999875 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8754
No 128
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-38 Score=339.15 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=167.8
Q ss_pred cEEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
.++++|++++|+.+. ..++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 24799999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEccccccccc-CHHHHhccCC---CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~-TIreNIlfg~---~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|++.++.. |++||+.++. ..+ +++..++++.++|.+... .+..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 28999999998875 9999998742 122 345677778777754333 3456899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
++||||+..+|+++||||||++||+++.+.+. +.+.... +|+|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999875 5666653 4899999999999999999999999999998775
No 129
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=9.6e-38 Score=324.40 Aligned_cols=166 Identities=34% Similarity=0.610 Sum_probs=152.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe------------EEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------iay 662 (1059)
++++|++++|+.. +.++++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999643 247999999999999999999999999999999999999999999999873 899
Q ss_pred EcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001528 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1059)
Q Consensus 663 v~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1059)
++|+|++++.|++||| ..+||||||||++||||+.++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 57899999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEec
Q 001528 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~G 800 (1059)
|||||++||+++.++++ +.+....+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLL-SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999998876 5666666789999999999999999999999999998765
No 130
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-38 Score=343.52 Aligned_cols=204 Identities=28% Similarity=0.447 Sum_probs=174.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++ |.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999963 479999999999999999999999999999999999997 4799998876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++|||.++.. . + ++++.++++.+++.++.. .....+..+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 2899999999999999999987632 1 1 245667777777754221 123456789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999998875 567666668999999999998755 99999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8654
No 131
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=345.84 Aligned_cols=203 Identities=24% Similarity=0.381 Sum_probs=177.9
Q ss_pred cEEEEeeeEeeCCCC---CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------
Q 001528 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~---~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------ 658 (1059)
-++++|++++|+... .+++|+|+||+|++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999996421 24799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEccccc--ccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 --~iayv~Q~pw--i~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|+|. +++.|+.||+.|+.. .+ +++++++++.++|.+.....| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 3899999984 677899999998632 12 356788888999877666544 6899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
++||||+.++|+++||||||++||+++.+.+. +.+..+. .|+|+|++||+++.+..||++++|++|++++.|+++|+
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999876 5676653 38999999999999888999999999999999999998
Q ss_pred HHc
Q 001528 806 LLA 808 (1059)
Q Consensus 806 ~~~ 808 (1059)
..+
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 764
No 132
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-37 Score=335.92 Aligned_cols=198 Identities=29% Similarity=0.484 Sum_probs=165.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|++++|+. .++++|+||++++||.++|+||+|||||||+++|.|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999953 4699999999999999999999999999999999999999999999876 28
Q ss_pred EEEccccccccc-CHHHHhccCCCCC-----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKPMD-----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~~~-----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
+|++|++.++.+ |++||+.++.... +++..++++... .+++ ....+..+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~----~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKE----RRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhh----hhhCchhhCCHHHHHHHHHHHHH
Confidence 999999998886 9999998865421 123334444431 1221 23355678999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
..+|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999875 5666543 5899999999999864 59999999999999999988865
No 133
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=343.60 Aligned_cols=205 Identities=26% Similarity=0.393 Sum_probs=174.5
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
..++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35899999999953 4699999999999999999999999999999999999975 799998865
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++||+.|+.. .+. ++.+++++.+++.+++. .....+..+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999999999999999987632 222 34566777777654322 123456778999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++.+|+++||||||++||+.+...+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 66776666899999999999875 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
No 134
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-37 Score=331.76 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=167.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .++|+|+||++++|+.++|+|++|||||||+++|.|+.+|.+|+|.++| .++||
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 4799999999999999999999999999999999999999999999987 38999
Q ss_pred ccccccc-ccCHHHHhccCCC---CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 664 SQTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 664 ~Q~pwi~-~~TIreNIlfg~~---~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
+|++.++ +.|++||+.++.. .++++.+++++..++.+... .+...||||||||++||||+.++|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 5799999987532 35677888888888876543 3456899999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999876 5665543 5899999999999886 49999999999998865
No 135
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=344.36 Aligned_cols=200 Identities=27% Similarity=0.459 Sum_probs=172.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|++++|+. +.++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 679999999953 24699999999999999999999999999999999999999999999876 28
Q ss_pred EEEccccc--ccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~pw--i~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++|+|. +++.|++|||.|+.. .+ +++++++++.++|.+.... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999986 577899999988642 22 3456677777777654433 3468999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++++|+|+||||||++||+.+..++. +.++.+. +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVL-ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998876 4565543 58999999999999988999999999999999999987653
No 136
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=343.76 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=174.0
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g--------- 658 (1059)
..++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 469999999999999999999999999999999999864 6899998865
Q ss_pred ------eEEEEcccccccccCHHHHhccCCCC--------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~~--------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++.++++|++||+.++... .+++..++++.+++.+++. .....+..+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 38999999999999999999875321 1234556666666653322 23456678999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999875 57777666799999999999765 59999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 98654
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=343.33 Aligned_cols=202 Identities=25% Similarity=0.428 Sum_probs=174.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.+ +.++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++| .+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35799999999999999999999999999999999999999999999876 38
Q ss_pred EEEcccc--cccccCHHHHhccCCC---CCHH----HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~p--wi~~~TIreNIlfg~~---~~~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+||+|+| .+++.|++|||.++.. ++++ +..++++..+|.+.+.. +..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4567899999988632 3333 45667777887665544 3469999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C-CCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~-~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||+.++|+++||||||++||+++.+.++ +.+.... + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999876 5666554 3 5899999999998888999999999999999999888654
No 138
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=340.26 Aligned_cols=204 Identities=29% Similarity=0.435 Sum_probs=174.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++++|+||+|++||+++|+|++|||||||+++|.|.+++ .+|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999963 4699999999999999999999999999999999998763 689999876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++|||.++.. . + +++..++++.+++.+++. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999999999999999988642 1 1 345566777777765443 234456789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+.+.+. +++....+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIE-ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 67777667899999999999865 499999999999999999998
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8643
No 139
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.1e-38 Score=334.60 Aligned_cols=191 Identities=29% Similarity=0.424 Sum_probs=163.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred cccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|++.++. .|++||+.++.. .+ +++..++++..++.+.... ...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 99999985 699999987532 22 2345666777777654443 34689999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
++|+++||||||++||+++.+.+. +.++... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999876 5666553 38999999999998765 8999999999999876
No 140
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=343.62 Aligned_cols=202 Identities=23% Similarity=0.354 Sum_probs=173.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.. ..++|+|+||+|++||+++|+||+|||||||+++|.|+++|.+|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999642 24699999999999999999999999999999999999999999999987 38
Q ss_pred EEEccccc--ccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~pw--i~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+|++|+|+ +.+.|+++|+.|+.. .+ +++.+++++..++.++.+ .+..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999995 556799999988743 22 234566677777655433 34568999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++++|+++||||||++||+++.+.+. +.++... .++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999876 5676654 37999999999999888999999999999999999998754
No 141
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-38 Score=333.94 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=164.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|+++.|+. .++++|+||++++| .++|+||+|||||||+++|.|+++|.+|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999953 46999999999999 9999999999999999999999999999999987 3899
Q ss_pred Eccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++|+|.++.+ |++|||.+... .+ +++.+++++.+++.+..+. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999986421 11 3456778888888655432 3367999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
.++|+++||||||++||+++.+++. +.+....+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFR-NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999876 56766666799999999999986 59999999999998865
No 142
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-38 Score=341.30 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=170.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+.. .++|+|+||+|++||.++|+||+|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999642 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
|++|+|.++. .|++||+.++.. .+ +++..++++..++.+. .....++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 699999987532 22 2345566666666530 12235568899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++++|+++||||||++||+++.+.+. +.+.... +|+|+|++||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999988765 5666553 389999999999975 55999999999999999999888643
No 143
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=344.97 Aligned_cols=206 Identities=24% Similarity=0.397 Sum_probs=177.3
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g-------- 658 (1059)
...++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.+++ .+|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346899999999953 4699999999999999999999999999999999999874 899998865
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|++.+++.|++|||.++.. . . +++..++++.+++.+++. +..+.++.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 4899999999999999999987632 1 1 244667777777765543 2446778899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999988764 67777667899999999999865 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+++.+.
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 998653
No 144
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=357.33 Aligned_cols=202 Identities=26% Similarity=0.365 Sum_probs=175.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~ia 661 (1059)
..++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+.+|++|+|.++| .|+
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45999999999953 4699999999999999999999999999999999999999999999988 389
Q ss_pred EEccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
||+|++-+|.. |++|||.|+.. .+ +++..++++..+|.+..+..| .+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999998743 22 246677888888876555444 4799999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
+.++|+++|||||||+||+++.+.+.+ .+..+. .+.|+|+|||+.+.+ .-||+|++|++|++++.|+.+|+..+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQL-EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999988754 454443 479999999999974 669999999999999999999998753
No 145
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=339.89 Aligned_cols=204 Identities=28% Similarity=0.408 Sum_probs=173.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC-----ccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~-----~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++|++++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999963 46999999999999999999999999999999999999987 69998765
Q ss_pred -----eEEEEcccccccccCHHHHhccCCCC----C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~~----~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|+|.+++.|++|||.++..+ . +++..++++..++.+.++ +....++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999999999999999986421 1 233455555566554332 335577889999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+...+. +.+....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999875 577666568999999999999765 79999999999999999998
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
No 146
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=321.75 Aligned_cols=200 Identities=30% Similarity=0.440 Sum_probs=172.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.|+++|++.+|+. +..+|+||||+|++||.+||+|+|||||||||++|-|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46899999999999999999999999999999999999999999999987
Q ss_pred -eEEEEccccccc-ccCHHHHhccCCC------------CCHHHHHHHH---HHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------------MDKARYDKAI---KACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 -~iayv~Q~pwi~-~~TIreNIlfg~~------------~~~~~y~~vl---~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
+|||++|++-|- .-|+-+|++.|+- +++++...++ +..++.+.. -.|-.+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 499999999875 5699999998752 4555555544 444544432 25678999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEE
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQ 798 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e 798 (1059)
|||+|||+|||||+++|+|+|-|||+|+||+.+++++++ .++.. -.|.|+|+.-|++++. +.||||+-|++|+|+.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~-~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD-ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999875 45443 4689999999999995 6699999999999999
Q ss_pred ecChHHHHH
Q 001528 799 SGNYQELLL 807 (1059)
Q Consensus 799 ~Gt~~eL~~ 807 (1059)
.|+.+|+-+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999999754
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=347.95 Aligned_cols=205 Identities=22% Similarity=0.369 Sum_probs=169.8
Q ss_pred CcEEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------
Q 001528 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------ 658 (1059)
+.++++|++++|+... ..++|+|+||++++||.++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999996432 13699999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEcccc--cccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 ------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 ------~iayv~Q~p--wi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.|+|++|+| .+++.|++|||.|+.. .+. ++..+.++..+|.+ ++ ......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------DY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------hH---hcCChhhCCHH
Confidence 389999998 4678899999988642 222 23344555555422 11 23456789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEec
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 800 (1059)
||||++||||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999998875 5666654 389999999999986 459999999999999999
Q ss_pred ChHHHHHc
Q 001528 801 NYQELLLA 808 (1059)
Q Consensus 801 t~~eL~~~ 808 (1059)
+++++...
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988654
No 148
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=340.36 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=176.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
-++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|..+| .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799999876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCCC----C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~~----~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|+||++.+++.|++||+.|+... + ++++.++++.++|.++++. ....+...||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 28999999999999999999876321 2 2456678888887655442 23456789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+|+|||||||+||..+.+.+. +.+....+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999875 577776667999999999998765 99999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 149
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-37 Score=334.79 Aligned_cols=191 Identities=28% Similarity=0.441 Sum_probs=162.6
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++++|++.. ..++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996421 24699999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcccccccc-cCHHHHhccCC---CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 --~iayv~Q~pwi~~-~TIreNIlfg~---~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
.++|++|++.+++ .|++||+.++. .++ +++..++++..++.+.+. .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 3899999999885 69999998742 122 245566777776654433 33468999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEE
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~ 797 (1059)
+||||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999875 5676653 379999999999999889999999999986
No 150
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.3e-37 Score=332.97 Aligned_cols=188 Identities=37% Similarity=0.591 Sum_probs=161.6
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------eEEEEccccc
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------~iayv~Q~pw 668 (1059)
++|++++|+. .++++|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|+|.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999953 4699999999999999999999999999999999999999999999988 3999999997
Q ss_pred c---cccCHHHHhccCCCC-----------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 669 i---~~~TIreNIlfg~~~-----------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
+ ++.|++|||.++... ++++.+++++.+++.++++. ...+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 568999999875421 23567788888888765543 3457999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
.++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIY-ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999875 5665543 68999999999998865 8999999886 66654
No 151
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.6e-37 Score=333.50 Aligned_cols=194 Identities=22% Similarity=0.379 Sum_probs=164.6
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEE
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~ia 661 (1059)
++++|++++|+... ..++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999996421 12699999999999999999999999999999999999999999999987 399
Q ss_pred EEccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
|++|+|.++.. |++||+.+... .+ +++..++++..++.+.++ .+..+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 99999999885 99999976422 12 345666777777654333 4567899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
++.+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999998865 5666543 5899999999999865 59999999999998765
No 152
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-37 Score=338.07 Aligned_cols=198 Identities=22% Similarity=0.370 Sum_probs=171.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++| .+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 4699999999999999999999999999999999999999999999877 28
Q ss_pred EEEccccccccc-CHHHHhccCCCC---------------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~~---------------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
+|++|++.++++ |++||+.++... ++++.+++++..++.+. ...+..+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence 999999999986 999999875321 13345556666555432 335567899999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++++|+++|||||||+||+++.+.+. +.+....+++|+|++||+++.+++ ||+|++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 99999999999999999999999999999999875 577776668999999999999865 9999999999999999999
Q ss_pred HHHH
Q 001528 804 ELLL 807 (1059)
Q Consensus 804 eL~~ 807 (1059)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 9864
No 153
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=338.88 Aligned_cols=196 Identities=28% Similarity=0.346 Sum_probs=170.7
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------eEEEEc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------~iayv~ 664 (1059)
..++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 45999999999963 4699999999999999999999999999999999999999999999877 489999
Q ss_pred ccccccc-cCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001528 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1059)
Q Consensus 665 Q~pwi~~-~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1059)
|++.+++ .|++||+.++.. ..+++..++++..+|.+... .+..+||||||||++||||+.++|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998887 699999988642 23466778888888765433 3457899999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 743 FDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||||++||+.+.+.+. +.+.... .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999875 5666543 4799999999999874 59999999999999988754
No 154
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=341.38 Aligned_cols=203 Identities=26% Similarity=0.421 Sum_probs=173.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
++.++++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 346899999999963 4699999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEcccccccc-cCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCC
Q 001528 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1059)
Q Consensus 659 -------------~iayv~Q~pwi~~-~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 716 (1059)
+++|+||++.++. .|++||+.++. ..+ +++..++++..++.+.+. ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 3899999999997 59999998642 122 345566666666654321 245
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G 794 (1059)
...||||||||++||||+.++|+++||||||++||+.+.+.+. +.+..+. +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 6789999999999999999999999999999999999999876 5666654 48999999999999886 8999999999
Q ss_pred eEEEecChHHHHHc
Q 001528 795 QITQSGNYQELLLA 808 (1059)
Q Consensus 795 ~I~e~Gt~~eL~~~ 808 (1059)
++++.|+++++.+.
T Consensus 229 ~i~~~~~~~~~~~~ 242 (257)
T PRK10619 229 KIEEEGAPEQLFGN 242 (257)
T ss_pred EEEEeCCHHHhhhC
Confidence 99999999998653
No 155
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=341.29 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=172.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC-----------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g----------- 658 (1059)
-+++|+++.|+. .++|+|+||+|++||+++|+|++|||||||+++|.|..+ |.+|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999953 479999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC-----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~-----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.++++|++|||.++.. .+ +++..++++..+|.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999999999999999987621 12 234556677777655432 234456789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999988765 67777667899999999999976 499999999999999999998
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8754
No 156
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=331.00 Aligned_cols=189 Identities=30% Similarity=0.472 Sum_probs=164.6
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
|+++|++++|+.. . .|+||++++||+++|+||+|||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999632 2 399999999999999999999999999999999999999999988 38999
Q ss_pred ccccccccc-CHHHHhccCCC-------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQSG-SIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~~-TIreNIlfg~~-------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|+|.++.+ |++||+.++.. .++++.+++++.++|.+.....| .+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999875 99999987642 12457788899998877666554 479999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
++|+++||||||++||.++.+.+. +.+.... +++|+|++||+++.+.+ ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999875 5676654 38999999999999865 9999999999998765
No 157
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=342.72 Aligned_cols=205 Identities=25% Similarity=0.382 Sum_probs=174.1
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g--------- 658 (1059)
..++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999987 6999998876
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC---C-CH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~---~-~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|+|.++..|++|||.++.. . ++ ++..++++..++.+++. .....++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999999999999999987532 2 22 22344555554443332 33456788999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++++|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999875 57777767899999999999975 59999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 98654
No 158
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=340.94 Aligned_cols=205 Identities=23% Similarity=0.370 Sum_probs=175.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g--------- 658 (1059)
..++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999987 5899999876
Q ss_pred ------eEEEEcccccccccCHHHHhccCCCC---C---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~~---~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ +....+..+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 38999999999989999999986532 2 345566777776654332 2345567889999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccCCeEEEEeC-----------C
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEG-----------G 794 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l-~~aD~Iivl~~-----------G 794 (1059)
|++||||++++|+++||||||++||+.+.+++. +.++...+++|+|++||+++.+ ..||+|++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 999999999999999999999999999999875 5677666689999999999886 56999999996 6
Q ss_pred eEEEecChHHHHHc
Q 001528 795 QITQSGNYQELLLA 808 (1059)
Q Consensus 795 ~I~e~Gt~~eL~~~ 808 (1059)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999998754
No 159
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.3e-37 Score=335.48 Aligned_cols=198 Identities=23% Similarity=0.419 Sum_probs=167.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|.++|.+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 28
Q ss_pred EEEccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|++|++.++.+ |++||+.++.+ .+ +++.++.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999998886 99999987532 12 233445555555533 334556789999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|+..+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999998875 5666543 589999999999765 5599999999999999999998764
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=344.14 Aligned_cols=203 Identities=21% Similarity=0.355 Sum_probs=170.8
Q ss_pred EEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
++++|++++|+... ..++|+|+||+|++|++++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcccc--cccccCHHHHhccCCC---CCHH----HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ---~iayv~Q~p--wi~~~TIreNIlfg~~---~~~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.|+|++|+| .+++.|++|||.|+.. .+.+ +.+++++..+|.++. ...+..+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 289999998 6888999999987532 2332 345556666664321 13456789999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|++||||++++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998875 5666543 4899999999999875 599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 8653
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=336.84 Aligned_cols=198 Identities=27% Similarity=0.405 Sum_probs=168.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 4699999999999999999999999999999999999999999999865
Q ss_pred ---eEEEEccccccccc-CHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~-TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
+++|+||++-++.+ |++|||.++. ..+ +++..+.++..++.+.+.. ...+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHH
Confidence 38999999998874 9999997421 111 2345556666666544443 34689999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|++||||++++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998876 5676654 48999999999999865 99999999999999999988
Q ss_pred HHH
Q 001528 805 LLL 807 (1059)
Q Consensus 805 L~~ 807 (1059)
+.+
T Consensus 228 ~~~ 230 (242)
T PRK11124 228 FTQ 230 (242)
T ss_pred hcC
Confidence 754
No 162
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=339.81 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=172.8
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999963 4699999999999999999999999999999999999987 499998875
Q ss_pred -----eEEEEccccccccc-CHHHHhccCCC---C--CH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -----SIAYVSQTSWIQSG-SIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~-TIreNIlfg~~---~--~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|++.++.. |++||+.++.. . +. ++..++++..++.+++.. ....+..+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 38999999999975 99999987531 1 22 345566666666544321 234567899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999875 56766666799999999999865 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 998754
No 163
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=340.13 Aligned_cols=204 Identities=27% Similarity=0.398 Sum_probs=176.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 469999999999999999999999999999999999976 4799998876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCCC------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~~------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
+++|++|++.+++.|++|||.++... .+++..++++.+++.+++.. ....++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999999999999999886431 13456667788888665542 2356678999999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccCCeEEEEe---------CCeEE
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLE---------GGQIT 797 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l-~~aD~Iivl~---------~G~I~ 797 (1059)
++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+ ..||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIE-ELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999865 6777766679999999999986 4589999998 89999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+.+|+.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999999754
No 164
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.4e-37 Score=335.97 Aligned_cols=199 Identities=25% Similarity=0.432 Sum_probs=170.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------e
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~ 659 (1059)
++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
++|++|++.++. .|++||+.++.. .+ +++..++++..+|.+.+. .+...||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 899999998885 699999987631 22 234556666666544333 3456899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|||++++|++++|||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999875 5676553 58999999999999864 999999999999999999988654
No 165
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=338.16 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=172.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999963 4699999999999999999999999999999999999974 699999887
Q ss_pred ---eEEEEcccccc-cccCHHHHhccCCCC-----C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ---~iayv~Q~pwi-~~~TIreNIlfg~~~-----~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.|+|++|+|-+ ++.|++||+.++... + +++..++++.++|.+.++ ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999975 468999999876321 1 245667778877754332 122344678999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||+.++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIE-SLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999876 56766666899999999999875 699999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8754
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-37 Score=334.09 Aligned_cols=197 Identities=24% Similarity=0.358 Sum_probs=168.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
..++++|++++|+. .++++|+||+|++||.++|+||+|||||||+++|.|+++|.+|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35899999999953 4699999999999999999999999999999999999999999999887 3
Q ss_pred EEEEcccccccccCHHHHhccCC-----CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~-----~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++|++|++.+++.|++||+.++. +.++++..++++..++.++ .......+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999999999998642 1234456667777766432 23456789999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEE-eCCeEEEecChH
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVL-EGGQITQSGNYQ 803 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl-~~G~I~e~Gt~~ 803 (1059)
+++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.++.||+|++| +++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVN-EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999988765 5676654 388999999999999999999999 467778889885
No 167
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4e-37 Score=340.07 Aligned_cols=208 Identities=25% Similarity=0.369 Sum_probs=172.6
Q ss_pred EEEEeeeEeeCCC------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------
Q 001528 595 VKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------- 658 (1059)
++++|++++|+.. .+.++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 135799999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEccccc--cc-ccCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 ------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 ------~iayv~Q~pw--i~-~~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
.|+|++|+|. ++ +.|++|||.++. .++ +++..++++..++.+++ ...++.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence 3999999983 33 479999996532 122 34556667776664221 234567899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEEE
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 798 (1059)
||||||++||||++++|+++||||||++||+++.+.+. +.+....+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999988765 56766543 899999999999986 599999999999999
Q ss_pred ecChHHHHHcCchHH
Q 001528 799 SGNYQELLLAGTAFE 813 (1059)
Q Consensus 799 ~Gt~~eL~~~~~~~~ 813 (1059)
.|+++++......|.
T Consensus 232 ~g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 232 ECDVAQLLSFKHPAG 246 (265)
T ss_pred ECCHHHHcCCCCHHH
Confidence 999999986444443
No 168
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=337.80 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=173.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|+++.|+. +++|+|+||+|++||.++|+|++|||||||+++|.|..+| .+|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 599999876
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|++.+++.|++|||.++.. . + ++++.++++..++.+++. +.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2899999999999999999987632 1 1 234455666667665543 3345667899999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
||+||||++.+|+++||||||++||+++.+.+. +.+....+++|+|++||+++.++. ||+|++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIE-ELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999988765 577777677999999999998765 999999999999999998887
Q ss_pred HH
Q 001528 806 LL 807 (1059)
Q Consensus 806 ~~ 807 (1059)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
No 169
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=343.74 Aligned_cols=204 Identities=24% Similarity=0.414 Sum_probs=172.8
Q ss_pred cEEEEeeeEeeCCCC--CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~--~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
.++++|++++|++.. ..++|+|+||++++||+++|+||+|||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 24699999999999999999999999999999999999999999999877
Q ss_pred ----eEEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ----~iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.|+|++|+| .+++.|++|||.|+.. .+ +++..++++.++|..+.. ..+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCHHHH
Confidence 279999998 5788999999987532 22 235567777777753221 234568999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
||++||||+..+|+++||||||++||+.+.+.+. +.+..+. +|+|+|++||+++.+ ..||+|++|++|++++.|+.+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999988765 5676653 589999999999986 469999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98653
No 170
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=340.81 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=173.3
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------e
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ 659 (1059)
..++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 45899999999953 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC-----------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~-----------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
++|++|++-++. .|++||+.++.. .++++.+++++.+++.+.+...| .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 899999976655 599999987531 12356778888888876555443 4799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
++||||+..+|+++||||||++||+++.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+.+|
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999865 5676653 3799999999999885 599999999999999999998
Q ss_pred HHH
Q 001528 805 LLL 807 (1059)
Q Consensus 805 L~~ 807 (1059)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 864
No 171
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=341.58 Aligned_cols=201 Identities=26% Similarity=0.432 Sum_probs=174.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3699999999999999999999999999999999999999999999977 38
Q ss_pred EEEcccc--cccccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 661 ayv~Q~p--wi~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
+||+|+| .+++.|++|||.++.. .++ ++++++++.++|.+.+...| ..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4778999999987542 333 45678888888876655443 58999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||++.+|+++||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+ +.||+|++|++|++++.|+++|+.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999998865 5666554 389999999999997 56999999999999999999999764
No 172
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=338.05 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=174.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.|+++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|..++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999953 4699999999999999999999999999999999998753 489998875
Q ss_pred -----eEEEEcccccccccCHHHHhccCCCC----C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~~----~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++|||.|+... + +++..++++..++.+++. +..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999999999999999987431 2 123455666666654433 346678889999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||.++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIE-DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999875 67776666799999999999986 599999999999999999998
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 8653
No 173
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.5e-37 Score=336.39 Aligned_cols=200 Identities=26% Similarity=0.430 Sum_probs=169.8
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.++++|++++|+. .++|+|+||++++|++++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 4699999999999999999999999999999999999999999998764
Q ss_pred ------eEEEEcccccccc-cCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 ------SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~-~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|+||++.+++ .|++||+.++. ..+ +++..++++..+|.+. ...+..+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 3899999999886 69999998642 222 2345556666555432 23456899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecC
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt 801 (1059)
||||++||||+..+|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999876 5666554 48999999999999865 99999999999999999
Q ss_pred hHHHHHc
Q 001528 802 YQELLLA 808 (1059)
Q Consensus 802 ~~eL~~~ 808 (1059)
.+++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9998654
No 174
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.3e-37 Score=306.79 Aligned_cols=192 Identities=24% Similarity=0.402 Sum_probs=172.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
|+|+||+..|+.+ .++|+||||+|++||++-++||||||||||+++|.|+..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 6799999999999999999999999999999999999999999999987
Q ss_pred eEEEEccccccc-ccCHHHHhccCCC-----CC--HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQ-SGSIRDNILYGKP-----MD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~-~~TIreNIlfg~~-----~~--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
+||+|.|+.-|. +-|+.||+.|... -+ +++..++++..+|.+-...|| ..||||++||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 599999998765 5699999998543 22 367788999999999999998 5799999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccC-CeEEEEeCCeEEEec
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~a-D~Iivl~~G~I~e~G 800 (1059)
|||+..+|+++|-||||.+||+.++..|+ +.+.+. ..|.||+++||+.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999987 455543 5799999999999999876 489999999998654
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=341.12 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=174.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5799999999963 4799999999999999999999999999999999999986 699999876
Q ss_pred ----eEEEEcccccccccCHHHHhccCCC----CCHHHH----HHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~~TIreNIlfg~~----~~~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|+|.+|+.|++|||.++.. .+++++ .+.++.+++.+.+ .+....+..+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 3899999999999999999987632 233333 4455666554322 23445678899999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
|++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999876 56766656799999999999865 5999999999999999999999
Q ss_pred HHc
Q 001528 806 LLA 808 (1059)
Q Consensus 806 ~~~ 808 (1059)
.+.
T Consensus 250 ~~~ 252 (276)
T PRK14271 250 FSS 252 (276)
T ss_pred HhC
Confidence 764
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-37 Score=330.56 Aligned_cols=197 Identities=28% Similarity=0.489 Sum_probs=172.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. .+ .|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 679999999963 22 399999999999999999999999999999999999999999987 38999
Q ss_pred ccccccccc-CHHHHhccCC-C------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQSG-SIRDNILYGK-P------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~~-TIreNIlfg~-~------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|++-++.+ |++|||.++. + .++++..++++..++.+.+...| ..||||||||++||||+.
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999998875 9999998753 1 12456788889988887766665 379999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEML-TLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999875 5666554 38899999999998765 899999999999999999998764
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=338.18 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=174.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|+++.|+. .++|+|+||++++||+++|+|++|||||||+++|.|.++| .+|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 4799999999999999999999999999999999999874 899999876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|+|.++..|++||+.++.. . . +++.+++++..++.+++. +....+..+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3999999999999999999987531 1 1 233555666667665442 234567889999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+ ..||+|++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999864 6777766789999999999975 5599999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8754
No 178
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.3e-37 Score=341.35 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=171.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
..++++|++++|+. .++|+|+||+|++|++++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999953 4699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEccccccccc-CHHHHhccCC----CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 --SIAYVSQTSWIQSG-SIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 --~iayv~Q~pwi~~~-TIreNIlfg~----~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|++.++++ |++|||.++. ..++ ++..+.++..++.+... .+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 38999999999986 9999998642 1222 34555667666654332 2346899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
++||||+.++|+++||||||++||+++.+.+. +.+.... +|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999998875 5676653 37999999999988755 99999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8764
No 179
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.3e-37 Score=338.42 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=170.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
|+++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4799999999999999999999999999999999999999999998865
Q ss_pred ----------eEEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 659 ----------SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 659 ----------~iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
.++|++|++.++. .|++||+.++.. .+ ++++.++++..++.+.+. ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 3899999999885 799999987521 22 245666777777655443 34568
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeE
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 796 (1059)
||||||||++||||+.++|+++||||||++||+.+...+. +.+.... .++|+|++||+++.+. .||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999998875 5676654 3899999999999875 5999999999999
Q ss_pred EEecChHHHHHc
Q 001528 797 TQSGNYQELLLA 808 (1059)
Q Consensus 797 ~e~Gt~~eL~~~ 808 (1059)
++.|+++++.+.
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T TIGR03005 226 VEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999999998754
No 180
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.8e-37 Score=330.68 Aligned_cols=188 Identities=26% Similarity=0.424 Sum_probs=161.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+.+ .++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++.+.....| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 3899999999887 599999987532 12 345677888888866554433 4899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
|||++++|+++||||||++||+++.+.+. +.+.... +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999875 5666543 58999999999999875 899999999975
No 181
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.1e-37 Score=315.74 Aligned_cols=162 Identities=26% Similarity=0.453 Sum_probs=148.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccccccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~~ 672 (1059)
++++|++++|+.+ +++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 79999999999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCH
Q 001528 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1059)
Q Consensus 673 TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~ 752 (1059)
|++|||.++ +...||||||||++||||++++|+++||||||++||.
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999874 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCe
Q 001528 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1059)
Q Consensus 753 ~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 795 (1059)
++.+.+. +.+... ++|+|++||+.+....||+|++|++|-
T Consensus 125 ~~~~~l~-~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLY-QLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHH-HHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999875 566654 699999999999888999999998763
No 182
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-37 Score=334.30 Aligned_cols=197 Identities=29% Similarity=0.482 Sum_probs=167.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~i 660 (1059)
++++|+++.|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| ++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4799999999999999999999999999999999999999999999876 38
Q ss_pred EEEccccccccc-CHHHHhccCCC-C--C-HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKP-M--D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~-~--~-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|++|++.++.. |++||+.++.. . + ++.+.++++..++ .......+..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999886 99999987643 2 1 2334445544431 112234556789999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHH
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999875 5666654 37999999999999875 999999999999999999987
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=341.95 Aligned_cols=200 Identities=26% Similarity=0.463 Sum_probs=172.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------e
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~ 659 (1059)
++++|++++|+. ..++++|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 679999999963 24699999999999999999999999999999999999999999999877 2
Q ss_pred EEEEcccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
|+|++|+| .+++.|++|||.++.. .+ +++..++++.++|.+... ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 6788999999987632 22 245667778777754322 2245899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|||+..+|+++||||||++||+++.+.+. +.+..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIM-KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999876 5666654 4899999999999876 5999999999999999999998754
No 184
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=355.67 Aligned_cols=187 Identities=26% Similarity=0.421 Sum_probs=164.2
Q ss_pred CcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEEEEcccccccc-c
Q 001528 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-G 672 (1059)
Q Consensus 611 ~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~iayv~Q~pwi~~-~ 672 (1059)
++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| +++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999876 3899999999986 5
Q ss_pred CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 673 TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
|++|||.|+.. ++ +++..++++.++|.+.....| .+||||||||++||||+..+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 356677888888876665554 4899999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 746 PFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
|||+||+.+.+.+. +.+..+. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+..+.
T Consensus 191 Pts~LD~~~r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQ-DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHH-HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 99999999999875 5565543 489999999999986 459999999999999999999998653
No 185
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=338.84 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=177.0
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
+.|+++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+.+| .+|+|.++|
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 46999999999963 3699999999999999999999999999999999999875 799998864
Q ss_pred --------eEEEEcccccccccCHHHHhccCCC--------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 --------SIAYVSQTSWIQSGSIRDNILYGKP--------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 --------~iayv~Q~pwi~~~TIreNIlfg~~--------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.++|++|++.++++|++|||.++.. ..+++..++++.+++.+++. +..+....+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCCH
Confidence 3899999999999999999987531 12456777888887765443 344567789999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecC
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 801 (1059)
|||||++||||++++|+++||||||++||.++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIE-ELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999998865 56766666789999999999985 599999999999999999
Q ss_pred hHHHHH
Q 001528 802 YQELLL 807 (1059)
Q Consensus 802 ~~eL~~ 807 (1059)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 999864
No 186
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.4e-37 Score=332.45 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=167.1
Q ss_pred cEEEEeeeEeeCCCCC-CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~-~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
.++++|++++|+.... .++|+|+||++++||.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999964321 3699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccccccccc-CHHHHhccCC---CC----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~~-TIreNIlfg~---~~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|+|.++.. |++|||.++. .. .+++..++++.+++.+.++..| .+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 38999999998874 9999998642 11 2456778888888876655444 4799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
++||||+.++|+++||||||++||.++.+.+. +.+.... .++|+|++||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999988875 5666553 37899999999999888999999999999864
No 187
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.2e-37 Score=352.84 Aligned_cols=187 Identities=33% Similarity=0.469 Sum_probs=163.8
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------------eEEEEccccc
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------------~iayv~Q~pw 668 (1059)
..+|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| +++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999986 3999999999
Q ss_pred ccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 669 i~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
+++ .|++|||.|+.. .+ +++..++++..+|.+..+.. ..+||||||||++||||++++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998743 22 24567788888886654433 357999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+|||||||+||+.+.+.+. +.+..+. .++|+|+|||+++.+ +.+|+|++|++|++++.|+.+|++.+
T Consensus 186 LLlDEPts~LD~~~r~~l~-~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQ-DELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999876 4565543 389999999999985 66999999999999999999999865
No 188
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5e-37 Score=345.18 Aligned_cols=201 Identities=25% Similarity=0.441 Sum_probs=172.1
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~i 660 (1059)
..++++|++++|+. ..+|+|+||+|++||.++++||+|||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999987 49
Q ss_pred EEEcccccccc-cCHHHHhcc-CCC--CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 661 AYVSQTSWIQS-GSIRDNILY-GKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 661 ayv~Q~pwi~~-~TIreNIlf-g~~--~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
|||||++.++. .|++||+.| +.- .+ +++..++++.++|.+. .++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999998875 799999985 321 12 2345566666666443 33333 479999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+..+|++++|||||++||++..+.++ +.+..+. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999876 5676653 58999999999999865 999999999999999999999754
No 189
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.8e-37 Score=347.95 Aligned_cols=211 Identities=23% Similarity=0.380 Sum_probs=175.2
Q ss_pred CcEEEEeeeEeeCCCC----------CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----
Q 001528 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~----------~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---- 658 (1059)
.-++++|++++|+.+. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4589999999996321 24689999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEcccc--ccc-ccCHHHHhccCC-----CCCH----HHHHHHHHHcCCchHHhcCCCCCCcccc
Q 001528 659 ------------SIAYVSQTS--WIQ-SGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1059)
Q Consensus 659 ------------~iayv~Q~p--wi~-~~TIreNIlfg~-----~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 714 (1059)
+|+||+|+| -++ ..||+|||.++. ..++ ++..++++..+|.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 499999998 355 579999996531 2332 3455677777774332 12
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEE
Q 001528 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVL 791 (1059)
Q Consensus 715 e~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl 791 (1059)
.....|||||||||+||||++.+|+++|+|||||+||..+.+.+. +.+..+. .+.|+|+|||+++.+.+ ||+|++|
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV-NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 345689999999999999999999999999999999999999986 4666654 38999999999999875 9999999
Q ss_pred eCCeEEEecChHHHHHcC-chHHH
Q 001528 792 EGGQITQSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 792 ~~G~I~e~Gt~~eL~~~~-~~~~~ 814 (1059)
++|+|+|.|+.+++.++. ..|.+
T Consensus 236 ~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred ECCEEEEEcCHHHHHcCCCCHHHH
Confidence 999999999999998653 34543
No 190
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-37 Score=328.62 Aligned_cols=191 Identities=27% Similarity=0.452 Sum_probs=163.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------eEEEEcc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------~iayv~Q 665 (1059)
++++|+++.|+. .++++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999953 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred cccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 666 TSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 666 ~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
++.++. .|++||+.++.. . .+++..+.++..++.+.+. .+..+||||||||++||||++++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 998887 499999976432 1 1345566777776654433 35578999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLK-DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999876 4565543 5799999999999875 49999999999998765
No 191
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=337.57 Aligned_cols=199 Identities=21% Similarity=0.359 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|+++.|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999953 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEccccccccc-CHHHHhccCCC----------------CC------HHHHHHHHHHcCCchHHhcCCCCCCccccCC
Q 001528 660 IAYVSQTSWIQSG-SIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1059)
Q Consensus 660 iayv~Q~pwi~~~-TIreNIlfg~~----------------~~------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 716 (1059)
++|++|+|.++.+ |++|||.++.. .+ .++..+.++..++. .....+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 7899999999985 99999997531 00 12333444444443 334566
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C-CCEEEEEcCCcccccc-CCeEEEEeC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSE-VDRILVLEG 793 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~-~kTvIlVTH~l~~l~~-aD~Iivl~~ 793 (1059)
..+||||||||++||||++.+|+++||||||++||+.+.+.+. +.+.... + ++|+|++||+++.+.+ ||+|++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD-ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999875 5666553 3 7899999999999855 999999999
Q ss_pred CeEEEecChHHHHH
Q 001528 794 GQITQSGNYQELLL 807 (1059)
Q Consensus 794 G~I~e~Gt~~eL~~ 807 (1059)
|++++.|+.+++..
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999988764
No 192
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=341.60 Aligned_cols=206 Identities=28% Similarity=0.447 Sum_probs=175.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g-------- 658 (1059)
+..++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999963 469999999999999999999999999999999999997 6899998876
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC---C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~---~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++|||.++.. . .+++++++++..+|.+++.. ....+..+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHH
Confidence 3899999999999999999987532 1 24567778888777554431 23466789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEE-EEeCCeEEEecChH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Ii-vl~~G~I~e~Gt~~ 803 (1059)
||++||||++++|+|+||||||++||..+.+.+. +.++...+++|+|++||+++.+.. ||+++ +|++|+|++.|+.+
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIE-DLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999875 577776667899999999999765 99975 57999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
++.++
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 88653
No 193
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.9e-37 Score=333.24 Aligned_cols=199 Identities=33% Similarity=0.461 Sum_probs=171.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|++++|+. +++|+|+||++.+||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 48999
Q ss_pred ccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
||+|.++.+ |++||+.++.+ .+ +++..++++..++.+..+. ...+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 999999975 99999988653 22 3445666777766544433 34689999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++|++++|||||++||+++.+.+. +.+....+ ++|+|++||+++.+.+ ||+|++|++|++++.|+.+++.+.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999876 56665543 7999999999998755 999999999999999999998753
No 194
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=344.37 Aligned_cols=205 Identities=27% Similarity=0.446 Sum_probs=176.1
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g--------- 658 (1059)
..+.++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|.++ |.+|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 469999999999999999999999999999999999986 6899999876
Q ss_pred ------eEEEEcccccccccCHHHHhccCCCC--------------------CHHHHHHHHHHcCCchHHhcCCCCCCcc
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~~--------------------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 712 (1059)
.++|++|++.+++.|++|||.++... .++++.++++.+++.+++ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 38999999999999999999976321 134566777777765443 345
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeE-EE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~I-iv 790 (1059)
...+..+|||||||||+||||++++|+|+||||||++||+.+.+.+. +.++...+++|+|++||+++.+.. ||+| ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE-DLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 56778899999999999999999999999999999999999999875 677777677999999999999765 9997 57
Q ss_pred EeCCeEEEecChHHHHHc
Q 001528 791 LEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 791 l~~G~I~e~Gt~~eL~~~ 808 (1059)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999998653
No 195
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-37 Score=335.42 Aligned_cols=205 Identities=25% Similarity=0.378 Sum_probs=174.7
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC--C---CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~--~---~~G~I~v~g--------- 658 (1059)
+.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 45899999999963 469999999999999999999999999999999999986 3 589999876
Q ss_pred ------eEEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|++.++. .|++|||.++.. .+ +++..++++.+++.+.+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999999988 699999986421 22 2456677778887654432 123457789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++.+|+++||||||++||..+.+.+. +.++...+++|+|++||+++.+. .||++++|++|+|++.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999998875 56777767899999999999875 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+|+...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 998653
No 196
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4e-37 Score=329.46 Aligned_cols=187 Identities=24% Similarity=0.446 Sum_probs=162.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|++++|+. +.++|+|+||+|++||.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24799999999999999999999999999999999999999999998876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
.++|++|+|.++. .|++||+.++.. . .+++.++.++..++.+.+...| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 3899999999985 699999987521 2 2456778888888876655444 4799999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
|||++++|+++||||||++||+.+...+. +.+.... +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999875 5666543 58999999999998875 89999999985
No 197
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.4e-37 Score=343.30 Aligned_cols=200 Identities=28% Similarity=0.424 Sum_probs=169.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~ia 661 (1059)
.++++|++++|+. .++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 499
Q ss_pred EEcccccccc-cCHHHHhcc-CC--CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILY-GK--PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlf-g~--~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
|+||++.++. .|++||+.+ +. ..++ ++.+++++.++|.+.. ++ +..+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DV----RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-------cC----chhhCCHHHHHHHHHHHH
Confidence 9999998885 699999974 22 1232 3445566666654332 22 335799999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+.++|+++||||||++||+++.+.+. +.+... .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999876 456554 35899999999999875 5999999999999999999998754
No 198
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-37 Score=332.85 Aligned_cols=199 Identities=30% Similarity=0.404 Sum_probs=174.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
+.++|++++|+. .++++|+||++++|+.++|+|++|||||||+++|.|+++|.+|+|.++| .++||
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999976 48999
Q ss_pred ccccccccc-CHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQSG-SIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~~-TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|++-++.+ |++||+.++.. . .+++++++++..++.+.+...| .+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 999999865 99999987532 2 2456778888888877666554 589999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++|+++||||||++||+.+.+.+. +.+....+ ++|+|++||+++.+++ ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999865 56766543 8999999999998755 899999999999999999888654
No 199
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-37 Score=335.44 Aligned_cols=198 Identities=27% Similarity=0.420 Sum_probs=171.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+. .++|+|+||++++|+.++|+|++|||||||+++|.|+++|.+|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 4799999999999999999999999999999999999999999999887 399
Q ss_pred EEccccccccc-CHHHHhccCCC-----C------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 662 YVSQTSWIQSG-SIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 662 yv~Q~pwi~~~-TIreNIlfg~~-----~------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
|++|++.++.+ |++||+.++.. + ++++.+++++.+++.+..+ .+...||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999988876 99999988631 1 2345677777777765433 345789999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||||+.++|+++||||||++||+++.+.+. +.+..+. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999998875 5665543 5899999999999875 599999999999999999999864
No 200
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.7e-37 Score=352.38 Aligned_cols=200 Identities=26% Similarity=0.446 Sum_probs=176.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~i 660 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|.+|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999963 5799999999999999999999999999999999999999999999987 39
Q ss_pred EEEcccccc-cccCHHHHhccCCC-----------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 661 ayv~Q~pwi-~~~TIreNIlfg~~-----------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
+||+|++-+ ++.|++||+.+|+. .++++.+++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 68899999988741 124567888888888755432 3468999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHH
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
+||||++++|+++||||||++||+.....+. +.++.+. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999998875 5666553 589999999999998 569999999999999999999988
Q ss_pred Hc
Q 001528 807 LA 808 (1059)
Q Consensus 807 ~~ 808 (1059)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 64
No 201
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=335.64 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=175.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|..+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 4899998876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|+||+|++|+.|++|||.++.. .+ ++++.++++.++|.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999999999999987531 22 24567788888887765432 3466789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+.. +|+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIE-DLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999988875 677766678999999999998765 78999999999999999999
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
No 202
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=335.93 Aligned_cols=197 Identities=27% Similarity=0.450 Sum_probs=169.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcC------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g------------ 658 (1059)
.++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4889999999963 47999999999999999999999999999999999999886 49998877
Q ss_pred ------eEEEEcccccccc-cCHHHHhccCCC------------C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCC
Q 001528 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~-~TIreNIlfg~~------------~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 716 (1059)
.++|++|++.++. .|++||+.++.. . .+++.+++++..++.+.++ .+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 2799999999887 599999987631 1 1345667777777754433 34
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEG 793 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~ 793 (1059)
..+||||||||++||||++.+|+++||||||++||.++.+.+. +.+.... +|+|+|++||+++.+ ..||+|++|++
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999875 5676654 379999999999975 56999999999
Q ss_pred CeEEEecChHHH
Q 001528 794 GQITQSGNYQEL 805 (1059)
Q Consensus 794 G~I~e~Gt~~eL 805 (1059)
|++++.|+++++
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999999996
No 203
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=337.69 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=169.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------e
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~ 659 (1059)
++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccccc--ccccCHHHHhccCC---CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~pw--i~~~TIreNIlfg~---~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
++|++|+|. ++..|+.||+.++. ..++ ++..++++..+|.+... ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999985 67789999998742 1222 34556777777754332 3456899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|||+..+|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999876 5666543 5899999999999885 5999999999999999999988654
No 204
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=336.97 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=173.4
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
...++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 456899999999963 4699999999999999999999999999999999999999999999987
Q ss_pred eEEEEccccccc-ccCHHHHhccCC-C-------C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 SIAYVSQTSWIQ-SGSIRDNILYGK-P-------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ~iayv~Q~pwi~-~~TIreNIlfg~-~-------~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|++-++ +.|++||+.++. + . ++++.+++++..+|.+... .+..+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHH
Confidence 389999999877 479999998752 1 1 1345677777777765433 345789999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|++||||++++|+++||||||++||+++.+++. +.+..+. +++|+|++||+++.+ ..||+|++|++|++++.|+.+
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999876 5666654 378999999999976 559999999999999999999
Q ss_pred HHHH
Q 001528 804 ELLL 807 (1059)
Q Consensus 804 eL~~ 807 (1059)
|+..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 9865
No 205
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.4e-37 Score=327.75 Aligned_cols=186 Identities=32% Similarity=0.517 Sum_probs=158.7
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEE
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv 663 (1059)
++|++++|+.. +.++|+|+||++++|+.++|+||+|||||||+++|.|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 68899999642 24699999999999999999999999999999999999999999999877 38999
Q ss_pred cccc--cccccCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 664 SQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 664 ~Q~p--wi~~~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
+|++ .+++.|++||+.++.. ++ +++..+.++..+|.+.++. +..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9998 3678999999987532 22 2355667777777655443 3468999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
+++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4565543 48999999999999877 99999999985
No 206
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=334.74 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=178.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
..+.+++.++.|.. .++|+|+||++++||+++|+|++|||||||+++|.|+++| .+|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 35788999999853 4799999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC---C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~---~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++|++|++++++.|++|||.++.. + .+++..++++..+|.+++.. ..+++..+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999999999999998743 1 23577888888888766543 234677899999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEe--------CCeEE
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE--------GGQIT 797 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~--------~G~I~ 797 (1059)
|++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~-~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVE-ELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999876 56766667899999999999865 599999996 89999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+++++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-36 Score=325.93 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=164.7
Q ss_pred EEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEEc
Q 001528 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1059)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv~ 664 (1059)
+++|++++|+. .++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68999999952 46799999999999999999999999999999999999999999987 389999
Q ss_pred ccccccc-cCHHHHhccCC-C-C-----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc
Q 001528 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1059)
Q Consensus 665 Q~pwi~~-~TIreNIlfg~-~-~-----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1059)
|+|.++. .|++||+.++. + . ++++..++++..++.+.....| .+||||||||++||||+++
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 9999987 49999997642 1 1 2456778899998876666655 3799999999999999999
Q ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecC
Q 001528 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 737 ~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 801 (1059)
+|+++||||||++||.++.+.+. +.+.... .++|+|+|||+.+.+. .||++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999876 5666654 3789999999999876 499999999999999874
No 208
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.4e-36 Score=328.47 Aligned_cols=195 Identities=26% Similarity=0.413 Sum_probs=159.3
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|++++|+... +.++|+|+||++++||.++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999996421 13699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEccccc--cc-ccCHHHHhccCCC-----CCHHHHH----HHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -SIAYVSQTSW--IQ-SGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -~iayv~Q~pw--i~-~~TIreNIlfg~~-----~~~~~y~----~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|+|. ++ +.|++|||.++.. .+++..+ +.++..++.+ .....+..+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999993 33 5899999976421 1122222 3444444421 233456678999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
||++||||++++|+++||||||++||+++.+.+. +.+....+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999998865 56766543 899999999999887 69999999999998765
No 209
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=332.80 Aligned_cols=198 Identities=28% Similarity=0.386 Sum_probs=171.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+. .++|+|+||++++|++++|+|++|||||||+++|.|+.+|.+|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999977 289
Q ss_pred EEcccccc-cccCHHHHhccCCC-C------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi-~~~TIreNIlfg~~-~------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
|++|++.+ ++.|++||+.++.. . ++++.+++++..++.+.... ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 67899999987642 1 13456777777777654333 457899999999999999
Q ss_pred hh------cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 734 ly------~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
++ .+|+++||||||++||+.+.+++. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+++|
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 99 599999999999999999999875 5676654 5899999999999876 699999999999999999998
Q ss_pred HHH
Q 001528 805 LLL 807 (1059)
Q Consensus 805 L~~ 807 (1059)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 865
No 210
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.7e-36 Score=331.49 Aligned_cols=203 Identities=26% Similarity=0.413 Sum_probs=174.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC----CccEEEEcC-----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~----~~G~I~v~g----------- 658 (1059)
.++++|++++| . .++|+|+||++++||+++|+|++|||||||+++|.|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999876
Q ss_pred eEEEEccccc-ccc--cCHHHHhcc-----CCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSW-IQS--GSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pw-i~~--~TIreNIlf-----g~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
.++||+|++- .|+ .|+.+|+.+ +.+.+++++.++++.++|.+. ++.++.....||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 443 588888753 444455778888888887542 234566778999999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|||++++|+++||||||++||..+.+.+. +.+.... .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999988865 5676653 3799999999999875 599999999999999999999976
Q ss_pred cC
Q 001528 808 AG 809 (1059)
Q Consensus 808 ~~ 809 (1059)
..
T Consensus 231 ~~ 232 (254)
T PRK10418 231 AP 232 (254)
T ss_pred CC
Confidence 53
No 211
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=330.26 Aligned_cols=199 Identities=21% Similarity=0.394 Sum_probs=168.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999953 4799999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC----CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~----~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
++|++|++.+++ .|++||+.++.. .++ ++..+.++..++. .....+...||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHH
Confidence 899999998887 599999987532 222 2344445444443 23445678999999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|||++++|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999998865 5565543 589999999999766 5589999999999999999999864
No 212
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=330.38 Aligned_cols=198 Identities=30% Similarity=0.435 Sum_probs=172.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv 663 (1059)
++++|+++.|+. ++|+|+||+|++||+++|+|++|||||||+++|.|.++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468999999952 379999999999999999999999999999999999999999999987 48999
Q ss_pred cccccccc-cCHHHHhccCCCC-------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 664 SQTSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~~-------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
+|++.++. .|++||+.++... .+++..+.++.++|.+++...| .+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHHH
Confidence 99999885 7999999875421 2345667788888876655443 579999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++|++++|||||++||+.+.+++. +.++... +++|+|++||+++.++. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999875 5666543 38999999999999765 999999999999999999988754
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=339.32 Aligned_cols=206 Identities=27% Similarity=0.383 Sum_probs=173.2
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-----CCccEEEEcC--------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-----~~~G~I~v~g-------- 658 (1059)
+..++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|..+ |.+|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 345899999999963 469999999999999999999999999999999999854 4999998866
Q ss_pred -------eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|+|.+++.|++|||.++.. . + +++..++++..++.+.+. .....+...||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 3899999999999999999988642 1 2 234455666666543222 1234567899999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||||++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999876 56776666789999999999975 5999999999999999999
Q ss_pred HHHHHc
Q 001528 803 QELLLA 808 (1059)
Q Consensus 803 ~eL~~~ 808 (1059)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 998754
No 214
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=329.22 Aligned_cols=200 Identities=22% Similarity=0.348 Sum_probs=166.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999953 4799999999999999999999999999999999999999999999877 2
Q ss_pred EEEEccccccccc-CHHHHhccCCCC-CHHHH----HHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 660 IAYVSQTSWIQSG-SIRDNILYGKPM-DKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 660 iayv~Q~pwi~~~-TIreNIlfg~~~-~~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
++|++|++-++.+ |++|||.++..+ +.++. .++++.. +..+++ ...+...||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~~l~~~-~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF---------PRLHER-RIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHH---------HHHHHH-HhCchhhCCHHHHHHHHHHHH
Confidence 8999999999884 999999886432 22222 2223222 111111 224567899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
++++|+|+||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998875 5666543 589999999999865 5699999999999999999999864
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.4e-36 Score=331.72 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=164.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcCe-------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYGS------------- 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g~------------- 659 (1059)
++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+. +|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999994 799999998772
Q ss_pred -EEEEccccccccc-CHHHHhccCCC----------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCC-CCCh
Q 001528 660 -IAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1059)
Q Consensus 660 -iayv~Q~pwi~~~-TIreNIlfg~~----------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~-~LSG 722 (1059)
++|++|+|.++.+ |++||+.+... .+ +++..++++..+|.+++. + .+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL------N----RSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc------c----cccccCcCH
Confidence 8999999998875 89999976421 12 234566676676653321 1 1122 4999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc--CCeEEEEeCCeEEEe
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I~e~ 799 (1059)
|||||++||||+.++|+++||||||++||+.+.+.+. +.+.... +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999876 5666554 57999999999999876 799999999999999
Q ss_pred cChHHH
Q 001528 800 GNYQEL 805 (1059)
Q Consensus 800 Gt~~eL 805 (1059)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998764
No 216
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=347.19 Aligned_cols=197 Identities=27% Similarity=0.453 Sum_probs=171.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
+++ |++++|+. . .+ |+||++++||+++|+||+|||||||+++|.|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 78888853 1 23 99999999999999999999999999999999999999998865
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
.++||+|++.+|. .|++|||.|+.. .++++..++++..+|.+.++..| .+|||||||||+||||+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 3899999999986 699999999854 35677888999998876665544 589999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
++|+++|||||||+||+++.+.+. +.++.+.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++|+..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELL-PYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999876 55665543 78999999999876 459999999999999999999998754
No 217
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.7e-36 Score=333.49 Aligned_cols=198 Identities=27% Similarity=0.416 Sum_probs=170.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|+++.|+. .++|+|+||++++||.++|+|++|||||||+++|.|.++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999963 4799999999999999999999999999999999999999999999987 389
Q ss_pred EEccccc-ccccCHHHHhccCCC---------C--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 662 YVSQTSW-IQSGSIRDNILYGKP---------M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 662 yv~Q~pw-i~~~TIreNIlfg~~---------~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
|++|++. .++.|++||+.++.. . ++++..++++.+++.+... .+...||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 566899999987631 1 1235667777777754333 345689999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||||++.+|+++||||||++||+++.+++. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+.+|+..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETL-ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999998875 5676553 479999999999998 4599999999999999999998764
No 218
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=333.70 Aligned_cols=205 Identities=25% Similarity=0.414 Sum_probs=175.3
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
..++++|++++|++ .++|+|+||++++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999999985 489999875
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++.+++.|++|||.++.. ++ +++..++++.+++.+++..+ ....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 3899999999999999999987531 12 24566778888886654422 345677999999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEe-----CCeEEE
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQ 798 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~-----~G~I~e 798 (1059)
|||++||||+.++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+.+ ||++++|+ +|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999999998875 567666667999999999999754 89999997 599999
Q ss_pred ecChHHHHHc
Q 001528 799 SGNYQELLLA 808 (1059)
Q Consensus 799 ~Gt~~eL~~~ 808 (1059)
.|+.+|+.+.
T Consensus 235 ~~~~~~~~~~ 244 (259)
T PRK14260 235 FGVTTQIFSN 244 (259)
T ss_pred eCCHHHHhcC
Confidence 9999998653
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-36 Score=314.26 Aligned_cols=159 Identities=38% Similarity=0.618 Sum_probs=146.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+.. ..++++|+||++++||.++|+||+|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 34699999999999999999999999999999999999999999999887 489
Q ss_pred EEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1059)
|++|+|++++.|++||+ ||||||||++||||+.++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 742 lLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
||||||++||+++.+.+. +.+.... +++|+|++||+++.+..||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999876 4565543 58999999999999989999999999975
No 220
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=331.93 Aligned_cols=204 Identities=26% Similarity=0.371 Sum_probs=169.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC-----ccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~-----~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 47999999999999999999999999999999999999874 89998876
Q ss_pred -----eEEEEcccccccc-cCHHHHhccCCC---C-CHH----HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~-~TIreNIlfg~~---~-~~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++.+++ .|++||+.++.. . .++ +..+.++..++.+.+ ++.. .....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRL----KTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhh----cCCcccCCHHH
Confidence 3899999999888 499999986532 1 222 233344445544332 2222 24467899999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||+.++|+++||||||++||..+.+.+. +.++...+++|+|++||+++.+.+ ||+|++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999998875 567666668999999999999875 8999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
+++..
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 98754
No 221
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.9e-36 Score=333.53 Aligned_cols=213 Identities=19% Similarity=0.324 Sum_probs=174.9
Q ss_pred cEEEEeeeEeeCCC------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------
Q 001528 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------- 658 (1059)
.++++|++++|+.. .+.++|+|+||++++||+++|+||+|||||||+++|.|+++|.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999531 124799999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEccccc--ccc-cCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 ----SIAYVSQTSW--IQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 ----~iayv~Q~pw--i~~-~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|+|. +++ -|+.||+.++. ..+ +++..++++.++|.++... ....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS----------YYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh----------cCchhcCHH
Confidence 3899999985 343 48999987532 122 3456778888888533221 223589999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
||||++||||++++|+++||||||++||+++.+.+. +.+.... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLI-NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988765 5676654 38999999999999876 9999999999999999
Q ss_pred ChHHHHHcC--chHHHHHH
Q 001528 801 NYQELLLAG--TAFEQLVN 817 (1059)
Q Consensus 801 t~~eL~~~~--~~~~~l~~ 817 (1059)
+++++.+.. ..+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999998653 23444543
No 222
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.5e-36 Score=338.17 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=173.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|++ ..+|+|+||++++||.++|+||+|||||||+++|+|.++|++|+|.++| .++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999953 4699999999999999999999999999999999999999999999987 3999
Q ss_pred Eccccccccc-CHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~~~-TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
+||+|.++.. |++||+.+... .+ +++.+++++..+|.+... .+..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999876 99999975321 12 345677777777765432 44578999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.++|++++|||||++||+.+.+.++ +.+....+++|+|++||+++.+.+ ||+|++|++|++++.|+.+++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIR-NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999876 567776678999999999998765 999999999999999999998754
No 223
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=341.39 Aligned_cols=210 Identities=20% Similarity=0.327 Sum_probs=173.8
Q ss_pred cEEEEeeeEeeCCCC-------CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------
Q 001528 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~-------~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------- 658 (1059)
.++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 24689999999999999999999999999999999999999999999876
Q ss_pred --------eEEEEccccc--ccc-cCHHHHhccC----CCCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 659 --------SIAYVSQTSW--IQS-GSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 659 --------~iayv~Q~pw--i~~-~TIreNIlfg----~~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
+|+||+|+|. +.. -||.+|+..+ ...+ +++..++++.++|.++. .+ .....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hc----CCCcc
Confidence 4999999983 433 4999998532 1122 34567788888885432 12 23467
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
|||||||||+||||+..+|+++|+|||||+||..+.++|++ .+.++. .|.|+|+|||+++.+.+ ||+|++|++|+|
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999874 565553 48999999999999865 999999999999
Q ss_pred EEecChHHHHHcC-chHHH
Q 001528 797 TQSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 797 ~e~Gt~~eL~~~~-~~~~~ 814 (1059)
+|.|+.+++.++. ..|.+
T Consensus 234 ve~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EEECCHHHHhcCCCCHHHH
Confidence 9999999998753 34543
No 224
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-36 Score=343.54 Aligned_cols=201 Identities=27% Similarity=0.443 Sum_probs=170.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~i 660 (1059)
..|+++|++++|+. ..+|+|+||+|++|+.++++||+|||||||+++|+|+++|++|+|.++| .|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 45999999999963 4699999999999999999999999999999999999999999999987 39
Q ss_pred EEEccccccc-ccCHHHHhcc-CCC--CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 661 AYVSQTSWIQ-SGSIRDNILY-GKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 661 ayv~Q~pwi~-~~TIreNIlf-g~~--~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|+||++.++ +.|++||+.| +.- .+ +++.+++++.++|.+ ..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999886 6799999975 321 22 234455666665543 333333 479999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+.++|+++||||||++||+.+.+.++ +.+..+. +|+|+|++||+++.+. -||+|++|++|+|+..|+.+++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999876 5665543 5899999999999985 4999999999999999999998754
No 225
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.5e-36 Score=328.34 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=177.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~ 671 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+.+|.+|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 5999999998765
Q ss_pred ---cCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCc
Q 001528 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1059)
Q Consensus 672 ---~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~S 748 (1059)
.|+++|+.+....++++..++++.++|.+.+.. ....||||||||++||||++++|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 489999877655567788899999998765543 356899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHcCchHHHHH
Q 001528 749 AVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1059)
Q Consensus 749 AlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~ 816 (1059)
+||+.+.+.+. +.+....+ ++|+|++||+++.+. .||+|++|++ +|++.|+++|+.+ ...+.+++
T Consensus 150 ~LD~~~~~~l~-~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 150 GVDVNGQVALY-DLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999875 56665543 899999999999974 5999999965 7999999999864 33444443
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=331.19 Aligned_cols=204 Identities=26% Similarity=0.422 Sum_probs=171.6
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC--C---CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~--~---~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|..+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4889999999963 469999999999999999999999999999999999865 4 589998876
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++|||.++.. .. +++..++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999999999999999987521 11 234555666666643322 234456789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIE-NMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 56766666789999999999986 599999999999999999888
Q ss_pred HHHc
Q 001528 805 LLLA 808 (1059)
Q Consensus 805 L~~~ 808 (1059)
....
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7654
No 227
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.5e-36 Score=325.22 Aligned_cols=190 Identities=25% Similarity=0.365 Sum_probs=161.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------- 658 (1059)
++++|+++.|+. +.++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 678999999942 24799999999999999999999999999999999999999999999876
Q ss_pred eEEEEcccccc-cccCHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi-~~~TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
.++|++|+|.+ ++.|++|||.++.. .++ ++.++.++..++.+++.. ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 38999999986 57899999987531 222 245566777776654443 346899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEE
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 798 (1059)
|||++++|+++||||||++||+++.+.+. +++.... +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999988876 5666543 57999999999999876 89999999999853
No 228
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=332.23 Aligned_cols=204 Identities=25% Similarity=0.398 Sum_probs=172.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|.++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4889999999963 4699999999999999999999999999999999999974 699999876
Q ss_pred -----eEEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|++-++. .|++||+.++.. .+ +++..++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 2899999999887 599999986531 11 234566777777754332 22345677899999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEe------CCeEE
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE------GGQIT 797 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~------~G~I~ 797 (1059)
|||++||||+.++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999875 67766666799999999999874 699999996 89999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999998754
No 229
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=331.25 Aligned_cols=193 Identities=26% Similarity=0.440 Sum_probs=165.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------eEEEEccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------~iayv~Q~ 666 (1059)
++++|+++.|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999953 4699999999999999999999999999999999999999999999987 38999999
Q ss_pred ccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 667 pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
+.++. .|++||+.++.. .+ +++..++++..+|.+... .+..+||||||||++||||+..+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 99887 699999987532 22 245677777777765433 345789999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEe--CCeEEEecCh
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~--~G~I~e~Gt~ 802 (1059)
+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999875 5666653 4899999999999875 589999998 5999998764
No 230
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.7e-36 Score=325.13 Aligned_cols=195 Identities=22% Similarity=0.314 Sum_probs=170.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------eEEEEcc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------~iayv~Q 665 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4899999
Q ss_pred cccccc-cCHHHHhccCC---CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001528 666 TSWIQS-GSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1059)
Q Consensus 666 ~pwi~~-~TIreNIlfg~---~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1059)
++-++. .|++||+.++. ..++++..++++..++.+... .+..+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998776 69999997643 235677888888888875433 234689999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 742 lLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999865 5676553 5899999999999885 599999999999999998764
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=332.51 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=175.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
..++++|+++.|+. .++|+|+||+|++||.++|+|++|||||||+++|.|++++ .+|+|.++|
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 46999999999963 4699999999999999999999999999999999999863 589998865
Q ss_pred ------eEEEEcccccccccCHHHHhccCCC---C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ------~iayv~Q~pwi~~~TIreNIlfg~~---~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.|+|++|++.+++.|++|||.++.. + .+++..++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 4899999999999999999988642 1 13445667777777654431 234667889999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEe---------CCeE
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE---------GGQI 796 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~---------~G~I 796 (1059)
|++||||++++|+++||||||++||+++...+. +.+....+++|+|++||+++.+. .||+|++|+ +|++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999875 56776667899999999999875 599999997 8999
Q ss_pred EEecChHHHHHc
Q 001528 797 TQSGNYQELLLA 808 (1059)
Q Consensus 797 ~e~Gt~~eL~~~ 808 (1059)
++.|+.+|+...
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 232
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.8e-36 Score=324.11 Aligned_cols=187 Identities=29% Similarity=0.452 Sum_probs=159.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------e
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~ 659 (1059)
++++|++++|+. .++|+|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEcccccccc-cCHHHHhccCC----CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~----~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
++|++|+|.++. .|++||+.++. ..+. ++..++++.+++.+.+.. ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 899999999886 69999998753 2222 345666666666554443 346899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
|||+.++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVL-DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998875 5666553 48999999999999864 999999999975
No 233
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.2e-36 Score=331.77 Aligned_cols=201 Identities=22% Similarity=0.349 Sum_probs=166.6
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 4699999999999999999999999999999999999999999998766
Q ss_pred -------eEEEEccccc--c-cccCHHHHhccC-----CCCC---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 659 -------~iayv~Q~pw--i-~~~TIreNIlfg-----~~~~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
.++|++|++. + .+.|++|||.+. .... +++..++++..++.+ +....++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 2899999984 2 345899998642 1111 123334444444431 2345778899
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 797 (1059)
|||||||++||||+.++|+++||||||++||+.+.+.+. ++++...+ |+|+|++||+++.+. .||+|++|++|+++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999875 56766543 889999999999987 59999999999999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+++++..+
T Consensus 232 ~~~~~~~~~~~ 242 (258)
T PRK11701 232 ESGLTDQVLDD 242 (258)
T ss_pred EeCCHHHHhcC
Confidence 99999998754
No 234
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=340.83 Aligned_cols=210 Identities=20% Similarity=0.366 Sum_probs=171.1
Q ss_pred EEEEeeeEeeCCCCC-CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC----CCccEEEEcC-----------
Q 001528 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG----------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~-~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~----~~~G~I~v~g----------- 658 (1059)
++++|++++|+.... ..+|+||||+|++||.++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999965322 369999999999999999999999999999999999997 4899999987
Q ss_pred ------eEEEEcccccc-cc--cCHHHHhc----cCCCC----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 ------SIAYVSQTSWI-QS--GSIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 ------~iayv~Q~pwi-~~--~TIreNIl----fg~~~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
.|+||+|+|.. ++ -|+.+|+. ..... ++++..++++..+|.+... ........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 28999999952 33 46666553 22111 2356677888888754211 1335667899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEE
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 798 (1059)
|||||||+||||+..+|+++|+|||||+||+.+...+. +.+..+. .|+|+|+|||+++.+. .||+|++|.+|+|+|
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il-~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII-ELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999886 4565553 4899999999999984 699999999999999
Q ss_pred ecChHHHHHcC-chHH
Q 001528 799 SGNYQELLLAG-TAFE 813 (1059)
Q Consensus 799 ~Gt~~eL~~~~-~~~~ 813 (1059)
.|+.+++.++. ..|.
T Consensus 235 ~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 235 TGKAHDIFRAPRHPYT 250 (326)
T ss_pred ECCHHHHhhCCCChHH
Confidence 99999998753 3454
No 235
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.7e-36 Score=339.47 Aligned_cols=187 Identities=24% Similarity=0.405 Sum_probs=162.8
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEEEccccccccc-CHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQSG-SIRD 676 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iayv~Q~pwi~~~-TIre 676 (1059)
.++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++| .++|+||++.++.. |++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999987 38999999998875 9999
Q ss_pred HhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcc
Q 001528 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 677 NIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SA 749 (1059)
|+.+... .+ +++..++++.++|.+... .+..+||||||||++||||+.++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 346777888888765433 23468999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 750 lD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
||+.+.+.+. +.+.... +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~-~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIW-DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999876 4666543 5899999999999876 5999999999999999999998754
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.4e-36 Score=323.64 Aligned_cols=190 Identities=27% Similarity=0.448 Sum_probs=165.2
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
++++|+++.|++.. ..++|+|+||++++|+.++|+|++|||||||+++|.|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
.++|++|+|.++. .|+.||+.++.. .+ ++++.++++.++|.++++..| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 3899999999887 799999987542 22 245777888888877666554 48999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
+||||++++|+++||||||++||+++.+.+. +.+.... +++|+|++||+.+....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999998876 5676654 48999999999998888999999999986
No 237
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=7.8e-36 Score=338.22 Aligned_cols=213 Identities=17% Similarity=0.373 Sum_probs=172.6
Q ss_pred CcEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcC----------
Q 001528 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG---------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g---------- 658 (1059)
..++++|++++|... ...++++|+||+|++||.++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 458999999999643 2346999999999999999999999999999999999999996 99999876
Q ss_pred -------eEEEEccccc--cc-ccCHHHHhccC----CCCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 659 -------SIAYVSQTSW--IQ-SGSIRDNILYG----KPMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 659 -------~iayv~Q~pw--i~-~~TIreNIlfg----~~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
.|+||+|+|. +. .-|+.+||... ...+. ++..+.++..+| |++. +.++.....|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccC
Confidence 3999999983 33 35888887532 22332 233444554443 4433 2356778899
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 797 (1059)
||||||||+||||++.+|+++|+||||||||..+.+.+. +.+..+.+ |.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999886 46665543 899999999999986 59999999999999
Q ss_pred EecChHHHHHcC-chHHH
Q 001528 798 QSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 798 e~Gt~~eL~~~~-~~~~~ 814 (1059)
|.|+.+|+.+.. ..|.+
T Consensus 242 e~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSI 259 (330)
T ss_pred EECCHHHHHhCCCCHHHH
Confidence 999999998753 34544
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=327.53 Aligned_cols=205 Identities=22% Similarity=0.345 Sum_probs=172.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
..++++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 45899999999963 4699999999999999999999999999999999999999997776554
Q ss_pred -----eEEEEccccccccc-CHHHHhccCCC---C-CHH----HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 -----SIAYVSQTSWIQSG-SIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~-TIreNIlfg~~---~-~~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.++|++|+|-++.+ |++|||.++.. + +++ +..++++..++.+.+. ....+.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 38999999999875 99999987532 2 222 3445566666654321 12345678899999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChH
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||++||||++++|++++|||||++||..+.+.+. +.+....+++|+|+|||+.+.+ ..||++++|++|++++.|+.+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE-KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999865 6777666679999999999998 569999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
|+.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 98754
No 239
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.9e-36 Score=330.57 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=173.3
Q ss_pred cEEEEeeeEeeCCC------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------
Q 001528 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------- 658 (1059)
.++++|+++.|+.. .++++++|+||+|++||+++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999631 135799999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEccccc--c-cccCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 659 -------~iayv~Q~pw--i-~~~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
.++|++|++. + .+.|++||+.+.. ..+ +++.++.++.+++..+ ....+...|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 3899999983 3 3579999986421 112 2346666766665432 223456789
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCcccccc-CCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 797 (1059)
|||||||++||||+.++|+++||||||++||+++.+.+. +++....+ ++|+|++||+++.+.+ ||+|++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999998875 56766543 8999999999999874 9999999999999
Q ss_pred EecChHHHHHcCchHHH
Q 001528 798 QSGNYQELLLAGTAFEQ 814 (1059)
Q Consensus 798 e~Gt~~eL~~~~~~~~~ 814 (1059)
+.|+++|+....+.|..
T Consensus 232 ~~g~~~~~~~~~~~~~~ 248 (268)
T PRK10419 232 ETQPVGDKLTFSSPAGR 248 (268)
T ss_pred eeCChhhccCCCCHHHH
Confidence 99999998865555543
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.9e-36 Score=322.61 Aligned_cols=198 Identities=29% Similarity=0.450 Sum_probs=159.6
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC---CCccEEEEcC----------eE
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~---~~~G~I~v~g----------~i 660 (1059)
+.++|++|.|+..+ ..++++|+||+|++||.++|+||+|||||||+++|.|+++ |++|+|.++| .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 57899999996532 3689999999999999999999999999999999999999 9999999987 39
Q ss_pred EEEccccccccc-CHHHHhccCCCC-----CHHHHH-HHHHHcCCchHHhcCCCCCCcccc-CCCCCCChHHHHHHHHHH
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKPM-----DKARYD-KAIKACALDKDINNFDHGDLTEIG-QRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~~-----~~~~y~-~vl~ac~L~~di~~Lp~Gd~T~IG-e~G~~LSGGQkQRIaLAR 732 (1059)
+|++|++.++++ |++|||.|+..+ ..+... +..+. ..++....+.+. ....+||||||||++|||
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED-------VLLRDLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH-------HHHHhhcchhhhcccccCcCHHHHHHHHHHH
Confidence 999999999987 999999875321 111111 00000 023333333333 345799999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCc--cccccCCeEEEEeCCeEEEec
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV--EFLSEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l--~~l~~aD~Iivl~~G~I~e~G 800 (1059)
|++++|+++||||||++||+.+.+++. +.+.... +++|+|++||+. +....||+|++|++|+++++|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLV-STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999876 4665543 588999999998 346779999999999999876
No 241
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=325.66 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=172.4
Q ss_pred cEEEEeeeEeeCCC-----------------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEE
Q 001528 594 SVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-----------------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v 656 (1059)
+|+++|++..|... ...++|+|+||+|++||.++|+|++|||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 56777777666531 2346899999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcccccccc-cCHHHHhccCC---CCCHHH----HHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 657 YGSIAYVSQTSWIQS-GSIRDNILYGK---PMDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 657 ~g~iayv~Q~pwi~~-~TIreNIlfg~---~~~~~~----y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
+|.++|++|++++.+ .|++|||.++. .++.++ +.++++..++.+.+ .....+||||||||+
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAKL 152 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHH
Confidence 999999999998775 69999997642 233333 33455555555443 235678999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHH
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
+||||++++|+|+||||||++||+.+.+.+.+ .+... .+++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999888764 45443 358999999999998765 8999999999999999999998
Q ss_pred HcCchHHHH
Q 001528 807 LAGTAFEQL 815 (1059)
Q Consensus 807 ~~~~~~~~l 815 (1059)
++...|.+.
T Consensus 232 ~~~~~~~~~ 240 (264)
T PRK13546 232 PKYEAFLND 240 (264)
T ss_pred HHhHHHHHH
Confidence 765444433
No 242
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-36 Score=329.75 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=169.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC--------ccEEEEcC--------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~--------~G~I~v~g-------- 658 (1059)
++++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999953 47999999999999999999999999999999999999998 99999987
Q ss_pred -----eEEEEccccc-ccccCHHHHhccCCC--------C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 -----~iayv~Q~pw-i~~~TIreNIlfg~~--------~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
.++|++|++- +++.|++|||.++.. . ++++.+++++..++.+ ..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 2799999975 678999999987631 1 1234566666666543 3445678999
Q ss_pred hHHHHHHHHHHHhh---------cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEE
Q 001528 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRIL 789 (1059)
Q Consensus 722 GGQkQRIaLARAly---------~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Ii 789 (1059)
|||||||+||||++ .+|+++||||||++||+.+.+++. +.+....+ ++|+|+|||+++.+. .||+|+
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999 599999999999999999999876 56666543 799999999999885 699999
Q ss_pred EEeCCeEEEecChHHHHH
Q 001528 790 VLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 790 vl~~G~I~e~Gt~~eL~~ 807 (1059)
+|++|+|++.|+.+++..
T Consensus 227 ~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 227 MLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEECCeEEEecCHHHHcC
Confidence 999999999999998864
No 243
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=338.19 Aligned_cols=212 Identities=19% Similarity=0.296 Sum_probs=173.4
Q ss_pred cEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC----CCccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~----~~~G~I~v~g---------- 658 (1059)
-++++|++++|+.. ....+++|+||+|++||.++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999642 23469999999999999999999999999999999999986 5899999877
Q ss_pred -------eEEEEcccccc-c--ccCHHHHhccC---C---C--C-----CHHHHHHHHHHcCCchHHhcCCCCCCccccC
Q 001528 659 -------SIAYVSQTSWI-Q--SGSIRDNILYG---K---P--M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1059)
Q Consensus 659 -------~iayv~Q~pwi-~--~~TIreNIlfg---~---~--~-----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 715 (1059)
.|+||+|+|.. + ..||.+||... . . . .+++..++++..+|.+.-+. ...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--------MRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--------HhC
Confidence 39999999973 2 36899999642 1 0 0 13467788888888642111 123
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEe
Q 001528 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
....|||||||||+||||++.+|+|+|||||||+||+.+.+++. +.+..+. .|.|+|+|||+++.+.. ||+|++|+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 34689999999999999999999999999999999999999876 5666654 38999999999999854 99999999
Q ss_pred CCeEEEecChHHHHHcC-chHHH
Q 001528 793 GGQITQSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 793 ~G~I~e~Gt~~eL~~~~-~~~~~ 814 (1059)
+|+|+|.|+.+++.++. ..|.+
T Consensus 234 ~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 234 CGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999998653 34544
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=328.25 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=173.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC-----ccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~-----~G~I~v~g---------- 658 (1059)
.++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5899999999953 36999999999999999999999999999999999999985 79887765
Q ss_pred -----eEEEEcccccccccCHHHHhccCCC---C-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -----~iayv~Q~pwi~~~TIreNIlfg~~---~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++|++|++.+++.|++||+.++.. . + +++..++++..++.+++.. ..+..+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999999999999999986521 1 1 2445677778877654442 23466789999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeC-----CeEE
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEG-----GQIT 797 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~-----G~I~ 797 (1059)
||++||||+.++|+++||||||++||+.+.+.+. +.+.... .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999875 5565542 4899999999999875 5899999999 9999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+++|+.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.16 Aligned_cols=199 Identities=26% Similarity=0.421 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iayv 663 (1059)
.++++|++++|+. +.++|+|+||+|++||+++|+||+|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 24799999999999999999999999999999999999999999999987 39999
Q ss_pred cccccc---cccCHHHHhccCCC-----------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 664 SQTSWI---QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 664 ~Q~pwi---~~~TIreNIlfg~~-----------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
||+|.+ +..+++||+.++.. .++++.+++++..+|.+.... +..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHH
Confidence 999865 45689999976421 123456677888887654332 33579999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHH
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||||++++|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+ ..||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999999875 5676653 589999999999876 568999777 899999999999753
No 246
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=315.05 Aligned_cols=179 Identities=23% Similarity=0.362 Sum_probs=152.3
Q ss_pred cEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC---CCccEEEEcC-----------
Q 001528 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~---~~~G~I~v~g----------- 658 (1059)
.++++|++|.|+.. .+.++|+|+||+|++||+++|+|++|||||||+++|.|.++ |.+|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36899999999754 35679999999999999999999999999999999999999 8999999877
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1059)
.++|++|++.++. .|++|||.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999998887 59999998753211 123456899999999999999999
Q ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCC-ccc-cccCCeEEEEeCCeEEEec
Q 001528 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQ-VEF-LSEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 737 ~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~-l~~-l~~aD~Iivl~~G~I~e~G 800 (1059)
+|+++||||||++||+++.+.+. +.+....+ ++|+|++||+ .+. ...||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999876 56766543 5677777665 455 4679999999999998765
No 247
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.3e-35 Score=340.48 Aligned_cols=194 Identities=24% Similarity=0.403 Sum_probs=165.6
Q ss_pred eeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEE
Q 001528 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1059)
Q Consensus 599 ~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~ia 661 (1059)
|++++|+. . .+ |+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 67888853 2 35 99999999999999999999999999999999999999998866 289
Q ss_pred EEccccccccc-CHHHHhccCCCC-C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 662 YVSQTSWIQSG-SIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 662 yv~Q~pwi~~~-TIreNIlfg~~~-~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
|++|++.+|.. |++|||.|+... + +++.+++++..+|.+..+. ...+||||||||++||||+.
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999974 999999987431 1 2356777777777654443 34689999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
.+|+++|||||||+||+.+.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++..+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEIL-PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999876 45665543 799999999999875 49999999999999999999987653
No 248
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-35 Score=328.77 Aligned_cols=201 Identities=26% Similarity=0.449 Sum_probs=175.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEE
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~ia 661 (1059)
.++++|++..|.. +..+|+||||+|++|+++|++||+|||||||+++|+|...|++|+|.++| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4778999999963 25799999999999999999999999999999999999999999999998 499
Q ss_pred EEcccccccc-cCHHHHhccC-----CC--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg-----~~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
|+||+|-++. -|++||+.|- .+ .++++.+++++..+|.++- ..+-..||||||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 9999998665 5999999763 22 3467889999999887622 24457899999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CC-CEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~-kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+..+|++|+||||||+||+...+.+. +.++.+. ++ +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIW-ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999876 5676654 35 799999999998766 999999999999999999997654
No 249
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9e-36 Score=365.52 Aligned_cols=191 Identities=28% Similarity=0.419 Sum_probs=164.0
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcCe----------EEEEcccccccc-cCH
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQS-GSI 674 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g~----------iayv~Q~pwi~~-~TI 674 (1059)
++++|+|+|+++++||+++|+||+|||||||+++|.|+.++. +|+|.++|. ++||+|++++++ .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999999874 899999984 699999999995 599
Q ss_pred HHHhccCCCC------CH----HHHHHHHHHcCCchHHhcCCCCCCccccCC--CCCCChHHHHHHHHHHHhhcCCCEEE
Q 001528 675 RDNILYGKPM------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYL 742 (1059)
Q Consensus 675 reNIlfg~~~------~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~--G~~LSGGQkQRIaLARAly~~~~Ill 742 (1059)
||||.|+... ++ ++.+++++..+ |++..+|.||+. +..|||||||||+||||++++|++++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999986532 11 22333443333 455678999985 58999999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcc--ccccCCeEEEEeCCeEEEecChHHHHH
Q 001528 743 FDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||||||+||++++.++.+ .+++. .+|+|+|+++|+++ ..+.+|+|++|++|+++++|+++|+.+
T Consensus 190 lDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 190 CDEPTSGLDSFMAYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred eeCCCcchhHHHHHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999875 45443 46899999999996 368899999999999999999999864
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-35 Score=316.85 Aligned_cols=184 Identities=30% Similarity=0.443 Sum_probs=156.9
Q ss_pred eeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEE
Q 001528 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1059)
Q Consensus 599 ~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~ia 661 (1059)
|++++|+. ..+ |+||++++ |.++|+|++|||||||+++|+|+++|.+|+|.++| .++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 78889964 234 99999999 99999999999999999999999999999998876 389
Q ss_pred EEcccccccc-cCHHHHhccCCCC-----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 662 YVSQTSWIQS-GSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~~~-----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
|++|++.++. .|++|||.++... +++++.+.++..++.+.. ..+..+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHh
Confidence 9999999985 6999999876432 234566777777665433 3456789999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C-CCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~-~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
++|+++||||||++||+.+.+.+. +.+.... + |+|+|++||+.+.+. .||+|++|++|+++++|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLL-PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999998876 5666553 2 799999999999875 59999999999998876
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-35 Score=305.10 Aligned_cols=158 Identities=28% Similarity=0.528 Sum_probs=143.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468999999963 3699999999999999999999999999999999999999999999876 3899
Q ss_pred Eccccccccc-CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001528 663 VSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1059)
Q Consensus 663 v~Q~pwi~~~-TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1059)
++|++.++.+ |++||+. ||||||||++||||++++|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999886 9999984 9999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeE
Q 001528 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1059)
Q Consensus 742 lLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 796 (1059)
||||||++||+++.+.+. +.+.... +|+|+|++||+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999876 5666553 5789999999999887 5899999999974
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.3e-35 Score=310.69 Aligned_cols=173 Identities=25% Similarity=0.434 Sum_probs=151.3
Q ss_pred cEEEEeeeEeeCCC---CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~---~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g---------- 658 (1059)
.++++|++++|+.. .+.++|+|+||++++||.++|+||+|||||||+++|.|++ +|.+|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 47899999999642 1257999999999999999999999999999999999999 99999999876
Q ss_pred eEEEEcccccccc-cCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
+++|++|++.++. .|++|||.++.... .||||||||++||||+.++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999999886 59999997542100 8999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcc-cc-ccCCeEEEEeCCeEEEec
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FL-SEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~-~l-~~aD~Iivl~~G~I~e~G 800 (1059)
|+++||||||++||.++.+.+. +.+.... +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999998876 5676654 5899999999997 44 459999999999998764
No 253
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-35 Score=319.44 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=159.0
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC----CccEEEEcC-----------eEEEEccccc-ccc--cC
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW-IQS--GS 673 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~----~~G~I~v~g-----------~iayv~Q~pw-i~~--~T 673 (1059)
+++|+||++++||+++|+||+|||||||+++|.|+++| .+|+|.++| .++|++|+|. .++ .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999877 4999999995 343 69
Q ss_pred HHHHhccCC-----CC--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCC
Q 001528 674 IRDNILYGK-----PM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1059)
Q Consensus 674 IreNIlfg~-----~~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp 746 (1059)
++||+.+.. .. +++++.++++.+++.+ + .+.......+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999986432 11 2345777888877752 1 1234556789999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 747 FSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 747 ~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|++||..+.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 153 t~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVL-KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999998875 5666654 3789999999999985 5999999999999999999999754
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-35 Score=310.44 Aligned_cols=173 Identities=22% Similarity=0.360 Sum_probs=150.9
Q ss_pred cEEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcC---------eEE
Q 001528 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g---------~ia 661 (1059)
.++++|+++.|+... +.++|+|+||++++||+++|+|++|||||||+++|.|.+ +|.+|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 478999999996421 257999999999999999999999999999999999986 48999999987 489
Q ss_pred EEccccccccc-CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 662 YVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 662 yv~Q~pwi~~~-TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++|++-++.. |++||+.++.. ++ +||||||||++||||++++|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 99999988775 99999986421 00 8999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc--cccCCeEEEEeC-CeEEEec
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF--LSEVDRILVLEG-GQITQSG 800 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~--l~~aD~Iivl~~-G~I~e~G 800 (1059)
++|||||++||+.+.+++. +.+.... +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999876 4565543 48999999999984 577999999999 9999865
No 255
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-35 Score=303.34 Aligned_cols=158 Identities=41% Similarity=0.667 Sum_probs=145.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|+++.|+.. ..++++|+||++++|+.++|+||+|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999643 23699999999999999999999999999999999999999999999987 389
Q ss_pred EEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEE
Q 001528 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1059)
Q Consensus 662 yv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1059)
|++|++.+++.|++||+ ||||||||++||||+.++|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCe
Q 001528 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1059)
Q Consensus 742 lLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~ 795 (1059)
||||||++||+.+..++. +.+....+++|+|++||+.+.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALIL-EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999988875 56776667899999999999998899999999985
No 256
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-35 Score=302.36 Aligned_cols=207 Identities=29% Similarity=0.466 Sum_probs=176.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
-++++|++..|.. ..+|+++||++++||+++++|++|+||||||++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3688999999964 4799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCCCCHH-HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~~~~~-~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
|+||||.-.+|. -||+||+..|....++ +.++. .+++-.+.+|. .......+|.+|||||+|-+|+|||+.++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999996 5999999987543221 11111 12334556663 34455678999999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
|++++||||+.+|-+...+.|| +.|..+.+ +-|+++|-++..+ ++-||+.+||++|+|+.+|+.+||.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999998 46766653 5699999999987 7789999999999999999999998763
No 257
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.5e-35 Score=320.55 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=165.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.++++|++++|+. .++|+|+||+|++|++++|+|++|||||||+++|.|.++|.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4889999999963 3689999999999999999999999999999999999999999998865
Q ss_pred -------eEEEEccccc--c-cccCHHHHhcc-----CCC-C--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 659 -------SIAYVSQTSW--I-QSGSIRDNILY-----GKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 659 -------~iayv~Q~pw--i-~~~TIreNIlf-----g~~-~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
.++|++|+|. + ...|+.|||.+ +.. . .+++..+.++..++. .+.......+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID----------PTRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC----------hhhhhcCchhc
Confidence 2799999984 2 34588999853 211 1 123333444444332 13445667899
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~ 797 (1059)
|||||||++||||++++|+++||||||++||+.+.+.+. +.+.... .++|+|+|||+++.+. .||++++|++|+++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999875 5666543 3899999999999987 59999999999999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
+.|+.+++..+
T Consensus 229 ~~~~~~~~~~~ 239 (253)
T TIGR02323 229 ESGLTDQVLDD 239 (253)
T ss_pred EECCHHHHhcC
Confidence 99999988753
No 258
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=335.35 Aligned_cols=210 Identities=21% Similarity=0.248 Sum_probs=175.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccc-
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~- 671 (1059)
..++++|++|.|+.+...++|+|+||+|++|++++|+|++|||||||+++|.|+++|.+|+|.++|.-.++++.+.+.+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 3588999999997654457999999999999999999999999999999999999999999999997666666665554
Q ss_pred cCHHHHhccCC---CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEc
Q 001528 672 GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1059)
Q Consensus 672 ~TIreNIlfg~---~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1059)
.|++|||.++. ..++ ++..++++.++|.+++.. ...+||||||||++||||+..+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 59999997643 2333 334567788887665443 35689999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHcCchHHH
Q 001528 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 814 (1059)
|||++||+.+.+.++ +.+.... +|+|+|++||+++.+.. ||+|++|++|++++.|+++|+...-..|.+
T Consensus 169 EPTsgLD~~sr~~Ll-elL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 169 EALSVGDQTFTKKCL-DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 999999999999876 4565543 58999999999998755 999999999999999999999876444433
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-34 Score=317.43 Aligned_cols=197 Identities=23% Similarity=0.350 Sum_probs=164.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC--CCCCccEEEEcC-------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe--~~~~~G~I~v~g------------- 658 (1059)
.++++|+++.|+. .++|+|+||++++||+++|+|++|||||||+++|.|. ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 4699999999999999999999999999999999998 689999999876
Q ss_pred -eEEEEccccccccc-CHHHHhccCCC----------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCC-CCC
Q 001528 659 -SIAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1059)
Q Consensus 659 -~iayv~Q~pwi~~~-TIreNIlfg~~----------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~-~LS 721 (1059)
.++|++|++.++.+ |+++|+.++.. .+ .+++.++++.+++.+.. ...... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF----------LSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh----------hccccccCCC
Confidence 27899999998875 89999876421 11 13455667777665221 112222 599
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc--CCeEEEEeCCeEEE
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQ 798 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I~e 798 (1059)
||||||++||||++++|+++||||||++||..+.+.+. +.+.... +++|+|++||+.+.+.. ||+|++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999876 5676654 58999999999998875 89999999999999
Q ss_pred ecChHH
Q 001528 799 SGNYQE 804 (1059)
Q Consensus 799 ~Gt~~e 804 (1059)
.|++++
T Consensus 233 ~~~~~~ 238 (252)
T CHL00131 233 TGDAEL 238 (252)
T ss_pred ecChhh
Confidence 999874
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.8e-35 Score=305.25 Aligned_cols=159 Identities=29% Similarity=0.508 Sum_probs=143.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++| +|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999999887 4
Q ss_pred EEEEcccc----cccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 660 iayv~Q~p----wi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
++|++|++ ...+.|++||+.++.+ ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 4556899999987532 9999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
.+|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.++. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999876 5676553 58999999999988866 999999999975
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-35 Score=302.34 Aligned_cols=159 Identities=34% Similarity=0.473 Sum_probs=144.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------e
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~ 659 (1059)
++++|++++|+. .++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999963 4699999999999999999999999999999999999999999998866 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
++|++|+|.++. .|++||+.+. ||||||||++||||+.++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 899999999885 5999999764 9999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhcC--CCEEEEEcCCccccc-cCCeEEEEeCCe
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQ 795 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~l~--~kTvIlVTH~l~~l~-~aD~Iivl~~G~ 795 (1059)
++++|||||++||+.+...+. +.+....+ ++|+|++||+.+.+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999876 56665543 699999999999987 599999999985
No 262
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.8e-35 Score=315.54 Aligned_cols=181 Identities=35% Similarity=0.477 Sum_probs=153.9
Q ss_pred ccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------EEEEcccccccc-cCHHHHhccCC-
Q 001528 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1059)
Q Consensus 613 L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------iayv~Q~pwi~~-~TIreNIlfg~- 682 (1059)
|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++|. .+|++|++-++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999998887 69999997641
Q ss_pred ----CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHH
Q 001528 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1059)
Q Consensus 683 ----~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t 754 (1059)
..++ ++..+.++.+++.+..+ .....||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 2232 34667777777765433 2346799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHH
Q 001528 755 AATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 755 ~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 150 ~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQ-EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99876 5665543 3789999999999865 5999999999999998865544
No 263
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.5e-34 Score=348.08 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=172.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++|+. .++|+|+||++++|++++|+||+|||||||+++|.|+++|.+|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEcccccccc-cCHHHHhccCCCC---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
++|++|++.++. .|++||+.|+... .+++..++++..+|.++.. .+..+||||||||++||||+.
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 899999998776 4999999987542 2356677788777754322 234679999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
.+|+++||||||++||+...+.+. +.+... -+|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLF-SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999876 456554 35899999999999875 599999999999999999998764
No 264
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.6e-35 Score=309.97 Aligned_cols=180 Identities=28% Similarity=0.432 Sum_probs=154.2
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------e
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~ 659 (1059)
++|+++.|+. .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC---C----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~---~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
++|++|++.++. .|++||+.++.. . .++++.++++..++.++.+ ....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 899999999987 699999987532 1 2356677788777755433 33567999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEE
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl 791 (1059)
||++++|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVL-DLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999875 5666554 489999999999988889999875
No 265
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=307.43 Aligned_cols=187 Identities=30% Similarity=0.465 Sum_probs=165.1
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEEEEccccccc-ccC
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGS 673 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~iayv~Q~pwi~-~~T 673 (1059)
.++|+||+|+.||+.+|-|-||||||||++++-|+++|++|+|.++| +++.|.|+.-|+ +-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999998 499999998776 579
Q ss_pred HHHHhccCCCC---C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCC
Q 001528 674 IRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1059)
Q Consensus 674 IreNIlfg~~~---~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp 746 (1059)
|-||..||.+. + +++-.++++..+|+.+=...| ..||||+||||.||||+..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999873 2 355667888899988877766 46999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHH-HhcCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 747 FSAVDAHTAATLFNECVM-AALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 747 ~SAlD~~t~~~i~~~~i~-~~l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
|||||+--....-++.+. ...-+||+|+|||.++. ++-.|+|..|+||+|++.||++|++.+.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999998886444432 22347999999999976 7889999999999999999999999764
No 266
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4e-34 Score=313.02 Aligned_cols=192 Identities=25% Similarity=0.422 Sum_probs=161.6
Q ss_pred EEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEE
Q 001528 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1059)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iay 662 (1059)
+++|+++. .+|+|+||++++||.++|+|++|||||||+++|.|.+++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45677764 279999999999999999999999999999999999865 99999987 2899
Q ss_pred Eccccc-ccccCHHHHhccCCCC--C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 663 v~Q~pw-i~~~TIreNIlfg~~~--~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
++|++. .++.|++||+.++.+. + +++..++++..+|.+.+. .....||||||||++||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999974 5678999999987432 2 345677787777754433 345789999999999999999
Q ss_pred c-------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHH
Q 001528 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 736 ~-------~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
+ +|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8 67999999999999999988875 5666553 589999999999965 569999999999999999999886
Q ss_pred H
Q 001528 807 L 807 (1059)
Q Consensus 807 ~ 807 (1059)
.
T Consensus 222 ~ 222 (248)
T PRK03695 222 T 222 (248)
T ss_pred C
Confidence 4
No 267
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=354.90 Aligned_cols=207 Identities=20% Similarity=0.352 Sum_probs=171.2
Q ss_pred CcEEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
..++++|++++|+... ..++|+||||++++||.++|+|++|||||||+++|.|+++|.+|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3589999999996322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEcccc--cccc-cCHHHHhccCC----CCCH----HHHHHHHHHcCCchHHhcCCCCCCccc
Q 001528 659 --------------SIAYVSQTS--WIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1059)
Q Consensus 659 --------------~iayv~Q~p--wi~~-~TIreNIlfg~----~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~I 713 (1059)
.|+||+|+| -++. -||+|||.++. ..+. ++..++++..+|.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 389999998 4554 69999998752 1222 456666777766320 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEE
Q 001528 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILV 790 (1059)
Q Consensus 714 Ge~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iiv 790 (1059)
.....+|||||||||+||||+..+|+++||||||++||+.+.+.+. +.++.+. .|+|+|+|||+++.+. .||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 3445689999999999999999999999999999999999999876 5666653 3899999999999874 5999999
Q ss_pred EeCCeEEEecChHHHHHc
Q 001528 791 LEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 791 l~~G~I~e~Gt~~eL~~~ 808 (1059)
|++|+|++.|+++++...
T Consensus 242 l~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHA 259 (623)
T ss_pred eeCCeecccCCHHHhhcC
Confidence 999999999999998754
No 268
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.4e-34 Score=313.03 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=157.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g-------------- 658 (1059)
++++|++++|+. .++|+|+||+|++|++++|+|++|||||||+++|.|.. +|.+|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999963 46999999999999999999999999999999999995 69999999876
Q ss_pred eEEEEccccccccc-CHHHHhccC-------CC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 SIAYVSQTSWIQSG-SIRDNILYG-------KP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~-TIreNIlfg-------~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
.++|++|++.++.. |..+|+.+. .. .+ +++.++.++..+ +|+++.+... ..+||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcccCC--CCCCCHH
Confidence 29999999987654 444443221 11 11 122333333333 3444333221 1379999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc--CCeEEEEeCCeEEEec
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I~e~G 800 (1059)
||||++||||++++|+|+||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA-DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999998875 5665544 47999999999999876 8999999999999999
Q ss_pred ChHHH
Q 001528 801 NYQEL 805 (1059)
Q Consensus 801 t~~eL 805 (1059)
++++.
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98864
No 269
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=302.51 Aligned_cols=451 Identities=17% Similarity=0.188 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHH
Q 001528 334 TQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFP-FWFHLTWSLALQLFLAI 409 (1059)
Q Consensus 334 ~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~iv---nl~s~D~~~i~~~~-~~~~~~~~~~l~i~~~~ 409 (1059)
++....|...-+..|.|..+..-+|++-++-..-..-.+..+.|- .+++.|++++.... .....+..+|+.++.-.
T Consensus 138 ~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~ 217 (659)
T KOG0060|consen 138 LNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYT 217 (659)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhh
Confidence 334445566778889999999888887765322111111112222 37889999875532 33344445566666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 001528 410 GVLFGVVGLGALPGLV-LFLICGLLNV----PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484 (1059)
Q Consensus 410 ~~L~~~lg~~~l~gl~-~~~~~~~l~~----~~~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~ 484 (1059)
+-++...||...+.+. -+++...++. |+.++..+.|+. .-|=|-+. +++..|-..|-+|+-++.=...++.
T Consensus 218 ~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl---EGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~ 293 (659)
T KOG0060|consen 218 FRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL---EGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQ 293 (659)
T ss_pred hHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh---hcchhhhe-eeeeecchhhhhhccCchHHHHHHH
Confidence 6677666654332221 1111222222 333333332222 23334333 4455566777788765432222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc--CCCCCHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001528 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCA---LTG--SAPLNASTIFTVLA----TLRSMGEPVRMIPEA 555 (1059)
Q Consensus 485 ~R~~El~~l~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~---l~~--~~~lt~~~~f~~l~----l~~~l~~pl~~lp~~ 555 (1059)
.-+.-++.+++.........++....--+..++.+++.. +.+ .+.++++..+..++ ++..+...+..+...
T Consensus 294 ~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~ 373 (659)
T KOG0060|consen 294 RFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDL 373 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222222222221111111111100000111111111000 001 14567776655433 233444555566666
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CC-------------CCCchhhh-------ccccCCCCcEEEEeeeEeeCCCCCCCccc
Q 001528 556 LSIMIQVKVSFDRINAFLLD-HE-------------LNNDDVRR-------ISLQKSDRSVKIQEGNFSWDPELAIPTLR 614 (1059)
Q Consensus 556 i~~~~~a~vs~~Ri~~fL~~-~e-------------~~~~~~~~-------~~~~~~~~~i~~~~~sf~~~~~~~~~~L~ 614 (1059)
-..+.+-..-..||.++++. ++ ...+.... ......+..|++++++++=|.+ +....+
T Consensus 374 ~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie 452 (659)
T KOG0060|consen 374 SRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIE 452 (659)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Cceeee
Confidence 66666666778888888641 00 00000000 0111234789999999997764 445677
Q ss_pred ceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc--C---eEEEEcccccccccCHHHHhccCC-------
Q 001528 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK------- 682 (1059)
Q Consensus 615 ~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~--g---~iayv~Q~pwi~~~TIreNIlfg~------- 682 (1059)
|+||+|+.|+-+.|+||+|||||||++.+-|+.+..+|++.-. | .+=|+||.|+.-.||+||-+.|-.
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccc
Confidence 7999999999999999999999999999999999999999864 3 499999999999999999999862
Q ss_pred -CCCHHHHHHHHHHcCCchHHhcCCCCCCcc-ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHH
Q 001528 683 -PMDKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760 (1059)
Q Consensus 683 -~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~-IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~ 760 (1059)
-.+++++.+.++.++|..-++.. +|.|++ +=|=+-.||+|++||+|.||-+|.+|.+-+|||+|||||.++|..+++
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr 611 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYR 611 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHH
Confidence 25789999999999998766654 566654 456688999999999999999999999999999999999999999987
Q ss_pred HHHHHhcCCCEEEEEcCCccccccCCeEEEEeC
Q 001528 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 761 ~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
+|= + .|-|-|-|.||-+.-+.=|.++-|+.
T Consensus 612 ~~r-~--~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 612 KCR-E--MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHH-H--cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 542 2 58899999999999999999999975
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4e-34 Score=302.85 Aligned_cols=172 Identities=30% Similarity=0.407 Sum_probs=149.1
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC--CCCCccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe--~~~~~G~I~v~g-------------- 658 (1059)
++++|++++|+. .++++|+||++++||.++|+|++|||||||+++|.|+ ++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 589999999876
Q ss_pred eEEEEccccccccc-CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 659 SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 659 ~iayv~Q~pwi~~~-TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
.++|++|+|.++++ |+++|+ . ....+||||||||++||||+.++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 29999999998875 555554 0 01247999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc--cCCeEEEEeCCeEEEecChHHHH
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~--~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
|+++||||||++||+.+.+.+. +++.... +++|+|++||+++.+. .||+|++|++|++++.| ..|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999998875 5666554 4899999999999987 59999999999999999 45553
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=346.13 Aligned_cols=198 Identities=23% Similarity=0.379 Sum_probs=167.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC--CccEEEEcC-------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~--~~G~I~v~g------------- 658 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999953 4799999999999999999999999999999999999996 899999876
Q ss_pred -eEEEEcccccccc-cCHHHHhccCCC------CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 -SIAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 -~iayv~Q~pwi~~-~TIreNIlfg~~------~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++||+|++.++. .|++|||.++.. .+. ++.+++++..++.++. ..+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----------ATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHHH
Confidence 2899999998876 599999998742 122 3445555555543222 2344679999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|++||||+..+|+|+|||||||+||++..+.+. +.+..+ .+|+|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999876 566554 35899999999999875 499999999999999999887
Q ss_pred HH
Q 001528 805 LL 806 (1059)
Q Consensus 805 L~ 806 (1059)
+.
T Consensus 230 ~~ 231 (506)
T PRK13549 230 MT 231 (506)
T ss_pred CC
Confidence 64
No 272
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.6e-34 Score=312.26 Aligned_cols=179 Identities=23% Similarity=0.367 Sum_probs=149.0
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEEEc-cccccc-ccCHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWIQ-SGSIR 675 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iayv~-Q~pwi~-~~TIr 675 (1059)
.++|+|+||+|++||+++|+|++|||||||+++|.|.++|++|+|.++| .++|++ |++.++ +.|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 5799999999999999999999999999999999999999999999876 489997 556665 67999
Q ss_pred HHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCc
Q 001528 676 DNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1059)
Q Consensus 676 eNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~S 748 (1059)
||+.++.. .++ ++..++++.+++.+.. ++ +..+||||||||++||||+.++|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976432 222 2344556666654332 22 345799999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 749 AVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 749 AlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
+||+++.+++. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 183 ~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIR-NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHH-HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999876 5676653 37899999999998755 8999999999998765
No 273
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.8e-34 Score=309.36 Aligned_cols=191 Identities=28% Similarity=0.344 Sum_probs=154.6
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcc-cccc-ccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q-~pwi-~~~ 672 (1059)
+.++|.+..|.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++|...+..+ ...+ .+.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 566777777753 57999999999999999999999999999999999999999999999997554333 3434 357
Q ss_pred CHHHHhccCCC---CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 673 TIreNIlfg~~---~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
|++||+.++.. .+. ++..++++..++.+.+. + ...+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-------L----PVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-------C----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 122 34555666665544332 2 335799999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
||++||+.+.+.+. +.+... .+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQ-RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999876 456554 35799999999999875 59999999999998865
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=352.24 Aligned_cols=213 Identities=19% Similarity=0.314 Sum_probs=175.6
Q ss_pred CcEEEEeeeEeeCCCC--------CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------
Q 001528 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~--------~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------ 658 (1059)
..++++|+++.|+.+. ...+|+|+||+|++||+++|+|++|||||||+++|+|.++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 3589999999996311 24689999999999999999999999999999999999999999999877
Q ss_pred ----------eEEEEccccc--cc-ccCHHHHhccCC---CC-C----HHHHHHHHHHcCCch-HHhcCCCCCCccccCC
Q 001528 659 ----------SIAYVSQTSW--IQ-SGSIRDNILYGK---PM-D----KARYDKAIKACALDK-DINNFDHGDLTEIGQR 716 (1059)
Q Consensus 659 ----------~iayv~Q~pw--i~-~~TIreNIlfg~---~~-~----~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IGe~ 716 (1059)
.|+||+|+|. ++ +.|++||+.++. .. + +++..++++.++|.+ ..+..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~----------- 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY----------- 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------
Confidence 3899999984 55 469999997632 11 1 246677888888853 33333
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEG 793 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~ 793 (1059)
-..|||||||||+||||+..+|+++|||||||+||..+.+.+. +.+..+. .|+|+|+|||+++.+. .||+|++|++
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999986 5666553 3799999999999875 4999999999
Q ss_pred CeEEEecChHHHHHc-CchHH-HHHH
Q 001528 794 GQITQSGNYQELLLA-GTAFE-QLVN 817 (1059)
Q Consensus 794 G~I~e~Gt~~eL~~~-~~~~~-~l~~ 817 (1059)
|+|++.|+.+|+..+ ...|. .++.
T Consensus 540 G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 540 GQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred CEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 999999999999764 23443 3443
No 275
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.7e-34 Score=347.38 Aligned_cols=190 Identities=25% Similarity=0.369 Sum_probs=163.3
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC--ccEEEEcC---------eEEEEcccccccc-cCHHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQS-GSIRDN 677 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~--~G~I~v~g---------~iayv~Q~pwi~~-~TIreN 677 (1059)
+++|+|+|+++++||++||+||+|||||||+++|.|..+|. +|+|.++| +++||+|++.++. .|++||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 89999988 3899999999985 699999
Q ss_pred hccCC------CCCHH----HHHHHHHHcCCchHHhcCCCCCCccccCC-CCCCChHHHHHHHHHHHhhcCCCEEEEcCC
Q 001528 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1059)
Q Consensus 678 Ilfg~------~~~~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IllLDdp 746 (1059)
+.|+. ..+++ +.+++++..+| ++..+|.||++ +..||||||||++||||+.++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98752 22332 34445555444 44568889875 678999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc--cccCCeEEEEeCCeEEEecChHHHHH
Q 001528 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 747 ~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~--l~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||+||+.++.++. +.++.+. +|+|+|++||+++. ...+|+|++|++|++++.|+++|+.+
T Consensus 234 tsgLD~~~~~~l~-~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLV-LTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999986 5666543 68999999999984 56799999999999999999999874
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=345.85 Aligned_cols=199 Identities=23% Similarity=0.356 Sum_probs=168.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999953 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC----------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~----------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
++||+|++-++. .|++||+.++.. .+ +++..++++.++|.+.. .....+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHH
Confidence 899999998776 499999987631 11 13455566666654322 22345799999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
|||++||||+..+|+++|||||||+||+.+.+.+. +.+..+ -+|+|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 99999999999999999999999999999999876 456554 35899999999999875 5999999999999999999
Q ss_pred HHHHH
Q 001528 803 QELLL 807 (1059)
Q Consensus 803 ~eL~~ 807 (1059)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88753
No 277
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=280.52 Aligned_cols=179 Identities=27% Similarity=0.431 Sum_probs=157.1
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEcccccccccCHH
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi~~~TIr 675 (1059)
+.++|+|+||++.+||.++|.||||||||||++.+.-+.+|++|++...| +|+||.|+|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHhccC-----CCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCccc
Q 001528 676 DNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1059)
Q Consensus 676 eNIlfg-----~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAl 750 (1059)
||+.|- +..|++....-++..+|.+ +....+-.+||||+||||||+|-+---|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999985 2356676666666655533 3445667899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc--CCCEEEEEcCCccc-cccCCeEEEEeCCeEEE
Q 001528 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQ 798 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e 798 (1059)
|.+..+.| ++.|.... ++..++.|||.... +++||+++-+..|++-+
T Consensus 165 D~~nkr~i-e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNI-EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHH-HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999986 56665544 68899999999987 99999999999998743
No 278
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=344.17 Aligned_cols=198 Identities=20% Similarity=0.352 Sum_probs=167.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
-++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999953 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcccccccc-cCHHHHhccCCC-------CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~~-------~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
++|++|++-++. -|++|||.|+.. .+. ++..++++..+|.+.. ...-.+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHH
Confidence 899999987775 599999998642 122 3455566666654322 12345799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
++||||+..+|+++||||||++||+.+.+.+. +.+..+ -+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999876 456554 35789999999999875 5899999999999999998876
Q ss_pred H
Q 001528 806 L 806 (1059)
Q Consensus 806 ~ 806 (1059)
.
T Consensus 229 ~ 229 (501)
T PRK10762 229 T 229 (501)
T ss_pred C
Confidence 4
No 279
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.6e-34 Score=300.80 Aligned_cols=181 Identities=24% Similarity=0.339 Sum_probs=153.9
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+.+|.+|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999987 4899
Q ss_pred Eccccccc-ccCHHHHhccCCC--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 663 VSQTSWIQ-SGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 663 v~Q~pwi~-~~TIreNIlfg~~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
++|++.++ +.|++||+.++.. .++++..++++..++.+..+ ....+||||||||++||||+.++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 6899999998632 23456677777666643222 2234699999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEE
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILV 790 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iiv 790 (1059)
++||||||++||+.+.+.+. +.+... -+++|+|++||+.+.+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999875 566654 358999999999999999997654
No 280
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.9e-34 Score=301.24 Aligned_cols=182 Identities=25% Similarity=0.303 Sum_probs=157.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999987 3899
Q ss_pred Ecccccccc-cCHHHHhccCCC----CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 663 VSQTSWIQS-GSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~----~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
++|++.+++ .|++|||.++.+ .++++++++++..+|.+..+. +..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998776 699999987643 245678889999988754432 3467999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccC-CeEEEE
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEV-DRILVL 791 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~a-D~Iivl 791 (1059)
|++++|||||++||+.+.+.+. +.++.. .+++|+|++||+++++..+ ++++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999875 566654 3578999999999999776 577666
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.4e-34 Score=297.47 Aligned_cols=176 Identities=28% Similarity=0.457 Sum_probs=142.8
Q ss_pred EEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-EEEEcccccccccCH
Q 001528 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSI 674 (1059)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~-iayv~Q~pwi~~~TI 674 (1059)
+++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++|. +.-. ++ ..+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~--~~----~~~ 71 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL--SP----KEL 71 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC--CH----HHH
Confidence 46899999963 46999999999999999999999999999999999999999999999873 1100 00 012
Q ss_pred HHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHH
Q 001528 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1059)
Q Consensus 675 reNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t 754 (1059)
+..|.+- .++++.+++.+++. .++.+||||||||++||||+.++|+++||||||++||+++
T Consensus 72 ~~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 72 ARKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred HHHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 2222211 11777888876544 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCEEEEEcCCcccc-ccCCeEEEEeCCeEEEec
Q 001528 755 AATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 755 ~~~i~~~~i~~~l~--~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 800 (1059)
.+.+. +.+....+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 133 ~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELL-ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 88865 56766544 78999999999997 569999999999998754
No 282
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-33 Score=301.13 Aligned_cols=186 Identities=23% Similarity=0.315 Sum_probs=155.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iay 662 (1059)
..++++|++++|+. .++++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 35899999999963 4699999999999999999999999999999999999999999999987 2899
Q ss_pred Eccccccccc-CHHHHhccCCCC----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC
Q 001528 663 VSQTSWIQSG-SIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1059)
Q Consensus 663 v~Q~pwi~~~-TIreNIlfg~~~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1059)
++|++.++.+ |++||+.++..+ .+++.+++++..+|.+.. + .+..+||||||||++||||++++
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------D----TLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------c----CChhhCCHHHHHHHHHHHHHhcC
Confidence 9999988876 999999765321 234445666665553322 2 33467999999999999999999
Q ss_pred CCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeC
Q 001528 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEG 793 (1059)
Q Consensus 738 ~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~ 793 (1059)
|++++|||||++||....+.+. +.++.. .+++|+|++||+.+.+. .||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998765 566543 45799999999999875 5899999864
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.8e-33 Score=298.09 Aligned_cols=182 Identities=24% Similarity=0.362 Sum_probs=156.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++| .++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 4899
Q ss_pred Eccccccc-ccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 663 v~Q~pwi~-~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
++|++.++ +.|++||+.+..+ .++++++++++..++.+... ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 6899999988654 46778889999998875432 23467999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc-cccCCeEEEE
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVL 791 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~-l~~aD~Iivl 791 (1059)
+||||||++||+.+.+.+. +.+.... +++|+|++||+... ...+|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999998875 5665543 58999999998765 5567888876
No 284
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-33 Score=308.32 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=159.0
Q ss_pred EeeCCCCCCCcccceeeeec-----CCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-eEEEEccccc-ccccCH
Q 001528 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1059)
Q Consensus 602 f~~~~~~~~~~L~~inl~i~-----~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-~iayv~Q~pw-i~~~TI 674 (1059)
|+|++. ...++|++|+++ +||+++|+|++|||||||+++|.|+++|.+|+|.++| +|+|+||++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 578643 458889998887 7999999999999999999999999999999999999 8999999987 478999
Q ss_pred HHHhccCCC-C--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccC
Q 001528 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1059)
Q Consensus 675 reNIlfg~~-~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD 751 (1059)
+||+.+... . .+++..++++.++|.+.+. .+..+||||||||++||||+.++|++|||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975432 1 2344667787777754332 3456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEE--EecChHHHHH
Q 001528 752 AHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT--QSGNYQELLL 807 (1059)
Q Consensus 752 ~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~--e~Gt~~eL~~ 807 (1059)
+++...+. +.++... +++|+|+|||+++.+. .||+|++|+++..+ ..++++++.+
T Consensus 148 ~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 148 VEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99998865 5676654 4899999999999987 49999999775444 5667777653
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=340.62 Aligned_cols=194 Identities=26% Similarity=0.341 Sum_probs=162.4
Q ss_pred EeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------eEEEE
Q 001528 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1059)
Q Consensus 598 ~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~iayv 663 (1059)
+|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 688899953 4699999999999999999999999999999999999999999999987 38999
Q ss_pred cccccccc-cCHHHHhccCCC------CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 664 SQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 664 ~Q~pwi~~-~TIreNIlfg~~------~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+|++.++. .|++||+.++.. .++ ++.+++++.+++..+ ...+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID-----------PRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHHHHHHH
Confidence 99997764 699999987642 122 234445555544322 23446789999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHH
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
|+..+|+++||||||++||+.+.+.+. +.+... -+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLF-TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999886 456554 35899999999999875 59999999999999999988864
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=340.03 Aligned_cols=193 Identities=23% Similarity=0.358 Sum_probs=163.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++++|+. .++|+|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccccccccc-CHHHHhccCCC------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 660 IAYVSQTSWIQSG-SIRDNILYGKP------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 660 iayv~Q~pwi~~~-TIreNIlfg~~------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
|+||+|++.++.. |++||+.++.. .+ +++..++++.++|.+.. ..+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----------DTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----------CCchhhCCHHHHHHH
Confidence 8999999988875 99999998631 12 23556677776664321 233468999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecC
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 801 (1059)
+||||+..+|+++||||||++||+++.+.+. +.+.... +|+|+|+|||+++.+. .||+|++|++|++++.++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999876 4565542 5899999999999875 599999999999987664
No 287
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-33 Score=297.36 Aligned_cols=179 Identities=17% Similarity=0.261 Sum_probs=153.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------eEEEEcc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------~iayv~Q 665 (1059)
++++|++++|+. +.++ ++||+|++||+++|+|++|||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999953 3344 59999999999999999999999999999999999999999988 2899999
Q ss_pred cccc-cccCHHHHhccCCCC--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001528 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1059)
Q Consensus 666 ~pwi-~~~TIreNIlfg~~~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1059)
++.+ ++.|++|||.++.+. ++++.+++++.+++.++.. .++.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 778999999886542 3567778888888765433 4567899999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHH-hcCCCEEEEEcCCccccccCCeEE
Q 001528 743 FDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRIL 789 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~-~l~~kTvIlVTH~l~~l~~aD~Ii 789 (1059)
|||||++||+.+.+.+. +.+.. ..+++|+|++||+.+.++.||-|.
T Consensus 147 lDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999988765 56653 346899999999999999999763
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-33 Score=298.44 Aligned_cols=183 Identities=25% Similarity=0.335 Sum_probs=157.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEEEc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iayv~ 664 (1059)
++++|+++.|+. ..+|+|+||+|++||+++|+|++|||||||+++|.|.++|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999963 3699999999999999999999999999999999999999999999987 379999
Q ss_pred cccccc-ccCHHHHhccCCC---CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE
Q 001528 665 QTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1059)
Q Consensus 665 Q~pwi~-~~TIreNIlfg~~---~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1059)
|++.++ +.|++||+.+... .++++..++++..+|.++.. .| ..+||||||||++||||+.++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 887664 6899999976433 34566888899888875433 22 247999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEEEeC
Q 001528 741 YLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 741 llLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
+||||||++||+.+.+++. +.+... -+++|+|++||+.+.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999875 566553 368999999999999998 99988854
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-33 Score=304.64 Aligned_cols=178 Identities=31% Similarity=0.496 Sum_probs=151.6
Q ss_pred eeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------EEEEcccccc---cccCHHHHhccCC----
Q 001528 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWI---QSGSIRDNILYGK---- 682 (1059)
Q Consensus 618 l~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------iayv~Q~pwi---~~~TIreNIlfg~---- 682 (1059)
|+|++||+++|+|++|||||||+++|.|.++|.+|+|.++|. ++|++|+|.+ ++.|++||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999983 9999999866 4589999998752
Q ss_pred -----C--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHH
Q 001528 683 -----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1059)
Q Consensus 683 -----~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~ 755 (1059)
+ .++++..++++.+++.+... ....+||||||||++||||+.++|+++||||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 12345677788887765432 23456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 756 ATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 756 ~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+.+. +.+.... +++|+|++||+++.+. .||+|+++ +|++++.|+++++.++
T Consensus 150 ~~l~-~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLT-ELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9876 4565543 5899999999999875 59999999 8999999999998654
No 290
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-33 Score=341.92 Aligned_cols=198 Identities=26% Similarity=0.399 Sum_probs=167.7
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEc---------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~--------------- 657 (1059)
++++|++++|+. .++|+|+||++++|++++|+||+|||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999953 46999999999999999999999999999999999996 7999999875
Q ss_pred --------C-----------------------eEEEEccc-ccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcC
Q 001528 658 --------G-----------------------SIAYVSQT-SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACA 697 (1059)
Q Consensus 658 --------g-----------------------~iayv~Q~-pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~ 697 (1059)
| .++||+|+ +.+++ .|++||+.|+.. ++ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 56665 599999987521 22 245667788887
Q ss_pred CchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEE
Q 001528 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILV 775 (1059)
Q Consensus 698 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlV 775 (1059)
|.+..+ ....+|||||||||+||||+..+|+++||||||++||+++.+.+. +.+..+. .|+|+|+|
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT 225 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence 755433 334679999999999999999999999999999999999999876 4666653 37999999
Q ss_pred cCCccccc-cCCeEEEEeCCeEEEecChHHHHH
Q 001528 776 THQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 776 TH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
||+++.+. .||+|++|++|++++.|+++++..
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999985 599999999999999999998865
No 291
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-33 Score=341.17 Aligned_cols=207 Identities=22% Similarity=0.380 Sum_probs=169.1
Q ss_pred cEEEEeeeEeeCC--CCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc-C------------
Q 001528 594 SVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G------------ 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~--~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~-g------------ 658 (1059)
.++++|++++|+. +...++|+|+||+|++||+++|+||+|||||||+++|.|+.+|++|+|.++ |
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5899999999953 123469999999999999999999999999999999999999999999984 3
Q ss_pred -------eEEEEcccccccc-cCHHHHhccCCC--CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHH
Q 001528 659 -------SIAYVSQTSWIQS-GSIRDNILYGKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~-~TIreNIlfg~~--~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
+++|++|++.+++ .|++||+.++.. .. +++..++++.++|.+.- + +.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~---~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK---A---EEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc---c---hhhhhCChhhCCHHH
Confidence 2899999988776 599999975321 11 23456677777764310 0 001123456799999
Q ss_pred HHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecC
Q 001528 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 725 kQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt 801 (1059)
|||++||||+..+|+++||||||++||+++.+.+. +.+..+. .|+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999876 5666553 3799999999999875 599999999999999999
Q ss_pred hHHHHH
Q 001528 802 YQELLL 807 (1059)
Q Consensus 802 ~~eL~~ 807 (1059)
.+++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.7e-33 Score=288.11 Aligned_cols=159 Identities=26% Similarity=0.448 Sum_probs=130.2
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-EEEEcccccccccC
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~-iayv~Q~pwi~~~T 673 (1059)
++++|++++|+. .++++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++|. +.. .+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~---------~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF---------AS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc---------CC
Confidence 468999999963 47999999999999999999999999999999999999999999999873 110 00
Q ss_pred HHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHH
Q 001528 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1059)
Q Consensus 674 IreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~ 753 (1059)
.++ .++ ..+...|+ ||||||||++||||++++|+++||||||++||.+
T Consensus 69 ~~~-----------~~~---------~~i~~~~q------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---------AGIAMVYQ------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---------cCeEEEEe------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 00111111 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEE
Q 001528 754 TAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1059)
Q Consensus 754 t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 798 (1059)
+.+++. +.++... +++|+|++||+++.+.+ ||++++|++|++++
T Consensus 117 ~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLF-KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999876 5666553 58999999999998754 99999999999975
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-33 Score=339.45 Aligned_cols=197 Identities=22% Similarity=0.405 Sum_probs=164.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC--CccEEEEcC--------------
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~--~~G~I~v~g-------------- 658 (1059)
++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+++| .+|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999953 4699999999999999999999999999999999999987 799999976
Q ss_pred eEEEEcccccccc-cCHHHHhccCCC-------CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~~-------~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
.++||+|++.++. -|++||+.++.. .+. ++.+++++.+++.+.. ++.. ..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRP----VGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCc----hhhCCHHHHH
Confidence 3899999998776 599999988643 121 3445556665553211 1222 3579999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~e 804 (1059)
|++||||++++|+++||||||++||+++.+.+. +.+..+ -+|+|+|+|||+++.+.+ ||+|++|++|++++.|+.++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999876 456554 358899999999998764 99999999999999998766
Q ss_pred H
Q 001528 805 L 805 (1059)
Q Consensus 805 L 805 (1059)
+
T Consensus 228 ~ 228 (500)
T TIGR02633 228 M 228 (500)
T ss_pred C
Confidence 4
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-33 Score=337.80 Aligned_cols=198 Identities=23% Similarity=0.329 Sum_probs=169.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
++++|++++|+. .++|+|+||++++|++++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 789999999963 3599999999999999999999999999999999999999999998865 279
Q ss_pred EEcccccc---------cccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 662 YVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 662 yv~Q~pwi---------~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
|++|++-+ ++-|++||+.++.. ++++.+++++..+|.+... .....||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99998753 24699999977532 3567788888888765433 234689999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+..+|+++||||||++||+++.+.+. +.+.... +|+|+|+|||+++.+. .||+|++|++|+++..|+.+++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLA-ELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999876 4565543 4789999999999875 5899999999999999999988653
No 295
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-33 Score=340.74 Aligned_cols=206 Identities=20% Similarity=0.361 Sum_probs=169.6
Q ss_pred cEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC---------
Q 001528 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g--------- 658 (1059)
-++++|++++|+.. ...++|+|+||++++||.++|+||+|||||||+++|.|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 125799999999999999999999999999999999999986 799998865
Q ss_pred --------eEEEEccccc--cc-ccCHHHHhccCC----CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 659 --------~iayv~Q~pw--i~-~~TIreNIlfg~----~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
.++|++|+|. ++ ..|++||+.++. ..+ +++..++++.++|.+... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999985 33 359999986421 121 356677788887753111 11234568
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeE
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I 796 (1059)
||||||||++||||++.+|+++|||||||+||+++.+.+. +.+..+. .++|+|+|||+++.+. .||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999876 5666543 3899999999999875 5999999999999
Q ss_pred EEecChHHHHHc
Q 001528 797 TQSGNYQELLLA 808 (1059)
Q Consensus 797 ~e~Gt~~eL~~~ 808 (1059)
++.|+.+++...
T Consensus 236 ~~~g~~~~~~~~ 247 (529)
T PRK15134 236 VEQNRAATLFSA 247 (529)
T ss_pred EEeCCHHHHhhC
Confidence 999999998754
No 296
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-34 Score=281.17 Aligned_cols=194 Identities=27% Similarity=0.434 Sum_probs=161.5
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------EEEEccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT 666 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------iayv~Q~ 666 (1059)
+..++.+.+|+.. ..++|+|+|++|.+||++++.|||||||||||+.+.|+++|..|+|.++|+ =+.|.|+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 3456788889754 367999999999999999999999999999999999999999999999985 7999999
Q ss_pred ccccc-cCHHHHhccCCCC---CH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 667 SWIQS-GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 667 pwi~~-~TIreNIlfg~~~---~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
+-++. -|+.||+.||... ++ +.-.+.+...+|.+.=. ..-..||||||||+.||||+..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHHhhcCc
Confidence 88775 6999999999752 32 33445555566554211 223579999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCccc-cccCCeEEEEe--CCeEEEecC
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLE--GGQITQSGN 801 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~-l~~aD~Iivl~--~G~I~e~Gt 801 (1059)
+.++||||++|||+-|.+++ |+.+..+ ..||-+++|||.++. +--|++++||+ .|+|++.=+
T Consensus 152 ~~LlLDEPfgAlDa~tRe~m-QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 152 QLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred ceEeecCchhhHHHHHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 99999999999999999986 5665443 379999999999986 67799999996 689998644
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-33 Score=341.82 Aligned_cols=202 Identities=19% Similarity=0.347 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCC--------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------
Q 001528 594 SVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~--------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------- 658 (1059)
.++++|++++|+.. .+.++|+|+||+|++||+++|+||+|||||||+++|.|.++ .+|+|.++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 58999999999521 13579999999999999999999999999999999999985 899999877
Q ss_pred ---------eEEEEcccc--cccc-cCHHHHhccCCC-----CC----HHHHHHHHHHcCCchH-HhcCCCCCCccccCC
Q 001528 659 ---------SIAYVSQTS--WIQS-GSIRDNILYGKP-----MD----KARYDKAIKACALDKD-INNFDHGDLTEIGQR 716 (1059)
Q Consensus 659 ---------~iayv~Q~p--wi~~-~TIreNIlfg~~-----~~----~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~ 716 (1059)
+++|++|++ .++. .|++||+.++.. .+ +++..++++..+|.++ .. ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-----------RY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------cC
Confidence 289999998 3554 699999987521 22 2455667777777532 22 33
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEG 793 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~ 793 (1059)
..+||||||||++||||+..+|+++||||||++||+++.+.++ +.++... .|+|+|+|||+++.+. .||+|++|++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 4679999999999999999999999999999999999999876 5666553 3799999999999875 5999999999
Q ss_pred CeEEEecChHHHHHc
Q 001528 794 GQITQSGNYQELLLA 808 (1059)
Q Consensus 794 G~I~e~Gt~~eL~~~ 808 (1059)
|+|++.|+.+|+.+.
T Consensus 502 G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 502 GEVVEQGDCERVFAA 516 (529)
T ss_pred CEEEEEcCHHHHhcC
Confidence 999999999998753
No 298
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=323.08 Aligned_cols=212 Identities=21% Similarity=0.374 Sum_probs=177.2
Q ss_pred CcEEEEeeeEeeCCC--------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------
Q 001528 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~--------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------ 658 (1059)
..++++|++..|... ....+++||||++++||.++|||+||||||||.++|+|..+|++|+|.++|
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 457899999999742 134689999999999999999999999999999999999999999999977
Q ss_pred ---------eEEEEcccccc---cccCHHHHhcc----CCCC----CHHHHHHHHHHcCCchH-HhcCCCCCCccccCCC
Q 001528 659 ---------SIAYVSQTSWI---QSGSIRDNILY----GKPM----DKARYDKAIKACALDKD-INNFDHGDLTEIGQRG 717 (1059)
Q Consensus 659 ---------~iayv~Q~pwi---~~~TIreNIlf----g~~~----~~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G 717 (1059)
++-+|.|+|.= -..||+++|.- ..+. .++++.+.++..+|.++ +.. .-
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-----------yP 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----------YP 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc-----------Cc
Confidence 48899999973 35799999962 2222 12456777889988864 333 34
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCC
Q 001528 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G 794 (1059)
..||||||||||||||+..+|+++++|||+||||+-+..+|. +.+..+. -|-|.|+|||+++++++ ||+|+||++|
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vl-nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 679999999999999999999999999999999999999987 4565543 47899999999999866 9999999999
Q ss_pred eEEEecChHHHHHc-CchHHHHH
Q 001528 795 QITQSGNYQELLLA-GTAFEQLV 816 (1059)
Q Consensus 795 ~I~e~Gt~~eL~~~-~~~~~~l~ 816 (1059)
+|+|.|+.+++.+. ...|.+.+
T Consensus 507 ~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 507 RIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred eEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999988876 45565544
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.4e-33 Score=340.89 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=163.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~ 671 (1059)
.++++|++++|+. ++++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+++ +|+||+|+|++++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 4899999999962 25799999999999999999999999999999999999999999999864 6999999999986
Q ss_pred c-CHHHHhccCCC-C----------------C--------------------------HHHHHHHHHHcCCchHHhcCCC
Q 001528 672 G-SIRDNILYGKP-M----------------D--------------------------KARYDKAIKACALDKDINNFDH 707 (1059)
Q Consensus 672 ~-TIreNIlfg~~-~----------------~--------------------------~~~y~~vl~ac~L~~di~~Lp~ 707 (1059)
. |++||+.++.. + . +++..++++.+++ ++
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~ 156 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC-------PP 156 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC-------Cc
Confidence 5 99999987531 0 0 1122222333322 11
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CC
Q 001528 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VD 786 (1059)
Q Consensus 708 Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD 786 (1059)
...+..+|||||||||+||||++++|+++|||||||+||+++.+.+. +.+... + +|+|+|||+++.+.. ||
T Consensus 157 -----~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~-~-~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 157 -----WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY-P-GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -----ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC-C-CeEEEEeCCHHHHHhhcC
Confidence 12345679999999999999999999999999999999999999875 566654 3 599999999999865 89
Q ss_pred eEEEEeCCeEE-EecChHHHHHc
Q 001528 787 RILVLEGGQIT-QSGNYQELLLA 808 (1059)
Q Consensus 787 ~Iivl~~G~I~-e~Gt~~eL~~~ 808 (1059)
+|++|++|+++ ..|+|+++.+.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHHH
Confidence 99999999986 78999987653
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-33 Score=343.28 Aligned_cols=207 Identities=26% Similarity=0.350 Sum_probs=169.5
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~ 671 (1059)
-++++|++++|++ ++++|+|+||+|++|++++|+|++|||||||+++|.|+++|++|+|.+++ .|+||+|+|++++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4789999999962 24799999999999999999999999999999999999999999999875 6999999999875
Q ss_pred -cCHHHHhccCCC-------------------CC--------HHHHHHHHHHcCCch-------HHhcCCCCCCccccCC
Q 001528 672 -GSIRDNILYGKP-------------------MD--------KARYDKAIKACALDK-------DINNFDHGDLTEIGQR 716 (1059)
Q Consensus 672 -~TIreNIlfg~~-------------------~~--------~~~y~~vl~ac~L~~-------di~~Lp~Gd~T~IGe~ 716 (1059)
.|++|||.++.. .+ .+++.++++.++..+ -++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 599999987531 11 124556666666532 12222 111 12345
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
..+||||||||++||||++++|+++||||||++||+++.+.+. +.+... ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE-QHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 6789999999999999999999999999999999999999875 456554 3699999999999865 89999999999
Q ss_pred EE-EecChHHHHHc
Q 001528 796 IT-QSGNYQELLLA 808 (1059)
Q Consensus 796 I~-e~Gt~~eL~~~ 808 (1059)
++ ..|+|++..+.
T Consensus 236 i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 236 GIPWEGNYSSWLEQ 249 (552)
T ss_pred EEEecCCHHHHHHH
Confidence 75 78999987654
No 301
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-33 Score=302.20 Aligned_cols=186 Identities=24% Similarity=0.361 Sum_probs=153.2
Q ss_pred EEEEeeeEeeCCC---C-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc--C----------
Q 001528 595 VKIQEGNFSWDPE---L-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~---~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~--g---------- 658 (1059)
++++|++++|+.. + ..++|+|+||+|++||.++|+|++|||||||+++|.|.++|.+|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 1 2469999999999999999999999999999999999999999999986 3
Q ss_pred ---------eEEEEcccccccc-cCHHHHhccCC---CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 ---------SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 ---------~iayv~Q~pwi~~-~TIreNIlfg~---~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
.++|++|+|.++. .|++|||.++. ..+ +++.+++++..++.++... ..+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH----------LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh----------CCcccCC
Confidence 3899999998776 59999997631 122 2455566666666443221 2467899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEE
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVL 791 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl 791 (1059)
||||||++||||+.++|+++||||||++||+++.+.+. +.++... +++|+|++||+.+.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999876 5666543 5899999999999875 69999876
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=337.70 Aligned_cols=198 Identities=21% Similarity=0.387 Sum_probs=163.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccc-
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS- 671 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~- 671 (1059)
|+++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| +|+|++|++-++.
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999953 4799999999999999999999999999999999999999999999986 6999999987765
Q ss_pred cCHHHHhccCCC-C--------------------------------------CHHHHHHHHHHcCCchHHhcCCCCCCcc
Q 001528 672 GSIRDNILYGKP-M--------------------------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1059)
Q Consensus 672 ~TIreNIlfg~~-~--------------------------------------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~ 712 (1059)
-|++||+.++.. . .+++..++++..++.+...
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------- 149 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH--------- 149 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh---------
Confidence 599999987531 0 0123334444444432111
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVL 791 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl 791 (1059)
.....+||||||||++||||+..+|+++||||||++||+++.+.+. +.+.. .++|+|+|||+++.+. .||+|++|
T Consensus 150 -~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 150 -YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLE-DVLNE--RNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHHh--CCCeEEEEeCCHHHHHhhcceEEEE
Confidence 1235689999999999999999999999999999999999999875 45543 4899999999999875 48999999
Q ss_pred eCCeE-EEecChHHHHHc
Q 001528 792 EGGQI-TQSGNYQELLLA 808 (1059)
Q Consensus 792 ~~G~I-~e~Gt~~eL~~~ 808 (1059)
++|++ ++.|++++.++.
T Consensus 226 ~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 226 DYGELRVYPGNYDEYMTA 243 (530)
T ss_pred eCCEEEEecCCHHHHHHH
Confidence 99999 489999988753
No 303
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-33 Score=338.80 Aligned_cols=202 Identities=19% Similarity=0.320 Sum_probs=166.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-CCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-~~~G~I~v~g-------------- 658 (1059)
.++++|+++.|+...+.++|+|+||+|++||+++|+|++|||||||+++|.|.++ |.+|+|.++|
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223569999999999999999999999999999999999998 5999999876
Q ss_pred eEEEEcccc---ccc-ccCHHHHhccCC--C------CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 SIAYVSQTS---WIQ-SGSIRDNILYGK--P------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 ~iayv~Q~p---wi~-~~TIreNIlfg~--~------~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.++|++|+| .++ +.|+.||+.++. . .++ ++..++++.+++.++ ....+...|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------CcccccccCCH
Confidence 289999996 355 569999998752 1 121 345566666665321 11234468999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
|||||++||||+..+|+++|||||||+||+.+.+.++ +.+..+ -+|+|+|++||+++.+. .||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY-KLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999876 456554 35899999999999875 59999999999999999
Q ss_pred ChHHHH
Q 001528 801 NYQELL 806 (1059)
Q Consensus 801 t~~eL~ 806 (1059)
+.+|+.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 887763
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=335.11 Aligned_cols=201 Identities=23% Similarity=0.375 Sum_probs=171.1
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccc--
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pw-- 668 (1059)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|.++|.+|+|.++| +++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999987 7999999974
Q ss_pred cc-ccCHHHHhccCC--CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 669 i~-~~TIreNIlfg~--~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
++ +.|++||+.+.. ..++++.+++++..++..+.. ..+..+||||||||++||||+.++|+|+||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI----------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh----------cCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 469999996422 234567788888888743221 23457899999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEE-EecChHHHHHcC
Q 001528 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLAG 809 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~~~~ 809 (1059)
||++||+.+.+.+. +.++.. +.|+|+|||+.+.+.. ||+|++|++|+++ +.|+++++++.+
T Consensus 465 Pt~~LD~~~~~~l~-~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 465 PTNHMDMESIESLN-MALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCCCCHHHHHHHH-HHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999998876 456554 4599999999998765 9999999999998 889999887654
No 305
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.7e-33 Score=294.32 Aligned_cols=179 Identities=26% Similarity=0.333 Sum_probs=150.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
++++|++++|+. .++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468999999963 4699999999999999999999999999999999999999999999987 3899
Q ss_pred Ecccccccc-cCHHHHhccCCCC---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC
Q 001528 663 VSQTSWIQS-GSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1059)
Q Consensus 663 v~Q~pwi~~-~TIreNIlfg~~~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1059)
++|++.+++ .|++||+.+..+. ++++..++++..++.+.++. +..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 7999999765432 24467888888888765432 33579999999999999999999
Q ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEE
Q 001528 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRIL 789 (1059)
Q Consensus 739 ~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Ii 789 (1059)
+++||||||++||+.+.+.+ .+.+... .+++|+|++||+...+.. |+++
T Consensus 147 ~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALL-AGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 99999999999999988876 4667654 468999999999865433 5544
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.4e-33 Score=298.40 Aligned_cols=186 Identities=17% Similarity=0.244 Sum_probs=153.5
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEE-EcCeEEEEccccccccc-CHHHHhccCC---CCCH
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQSG-SIRDNILYGK---PMDK 686 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~-v~g~iayv~Q~pwi~~~-TIreNIlfg~---~~~~ 686 (1059)
+|+|+||+|++||+++|+||+|||||||+++|+|+++|.+|+|. ++|....+.|++.+++. |++|||.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 88865556778888875 9999997643 2344
Q ss_pred HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh
Q 001528 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766 (1059)
Q Consensus 687 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~ 766 (1059)
++..+.+. +...+++..++.+ ..||||||||++||||+..+|+++|||||++++|+++.+.+. +.+...
T Consensus 82 ~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~-~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ-AALACQ 150 (213)
T ss_pred HHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH-HHHHHH
Confidence 44433321 1223444444444 459999999999999999999999999999999999998875 445555
Q ss_pred cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 767 LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 767 l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
++++|+|++||+++.+. .||+|++|++|++++.|+-++....
T Consensus 151 ~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 151 LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 67899999999999885 6999999999999999998888643
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.1e-33 Score=320.44 Aligned_cols=211 Identities=24% Similarity=0.412 Sum_probs=174.5
Q ss_pred cEEEEeeeEeeCCCCC-CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC----ccEEEEcC----------
Q 001528 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~-~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~----~G~I~v~g---------- 658 (1059)
-++++|.+.+|..... .++++||||++.+||.+||||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25999999999999999999999999999999999999988 89998877
Q ss_pred -------eEEEEccccc-cccc--CHHHHhc----cCCCC----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 659 -------SIAYVSQTSW-IQSG--SIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 659 -------~iayv~Q~pw-i~~~--TIreNIl----fg~~~----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
.|||++|+|+ .+|- ||.+-|. ...+. .+++..+.++..+|.+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999987 5664 7766663 22222 23555667777777655443 2234679
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 797 (1059)
|||||||+.||+|+..+|+++|+||||.|||+.|.++|. +.++.+. .|.++|+|||.+..+.+ ||+|+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL-~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQIL-DLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHH-HHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999997 4676654 68999999999999754 9999999999999
Q ss_pred EecChHHHHHcC-chHHH
Q 001528 798 QSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 798 e~Gt~~eL~~~~-~~~~~ 814 (1059)
|.|+.+++.++. ..|.+
T Consensus 235 E~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 235 ETGPTEEILSNPQHPYTR 252 (539)
T ss_pred EecCHHHHHhccCCcccH
Confidence 999999999764 33543
No 308
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-33 Score=300.32 Aligned_cols=212 Identities=24% Similarity=0.437 Sum_probs=171.3
Q ss_pred EEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-C----CccEEEEcC----------
Q 001528 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-~----~~G~I~v~g---------- 658 (1059)
++++|.+..|.... ...+++||||++++||.+||||.|||||||+.++|+|+++ + .+|+|..+|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57889998886532 3579999999999999999999999999999999999998 3 578998877
Q ss_pred -------eEEEEccccc-ccc--cCHHHHh----ccCCCC-----CHHHHHHHHHHcCCch---HHhcCCCCCCccccCC
Q 001528 659 -------SIAYVSQTSW-IQS--GSIRDNI----LYGKPM-----DKARYDKAIKACALDK---DINNFDHGDLTEIGQR 716 (1059)
Q Consensus 659 -------~iayv~Q~pw-i~~--~TIreNI----lfg~~~-----~~~~y~~vl~ac~L~~---di~~Lp~Gd~T~IGe~ 716 (1059)
.|||++|+|- =+| -||.+-| ...... ..++..+.++..++.+ -++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 4999999985 233 2454444 322222 2346677788888865 344555
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeC
Q 001528 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEG 793 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~ 793 (1059)
..|||||||||.||-|+..+|+++|-||||+|||..+.++|. +.++++. .|.|+|+|||++..+ .-||+|.||..
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl-~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL-DLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 579999999999999999999999999999999999999987 4566554 589999999999986 55999999999
Q ss_pred CeEEEecChHHHHHcC-chHHH-HHHH
Q 001528 794 GQITQSGNYQELLLAG-TAFEQ-LVNA 818 (1059)
Q Consensus 794 G~I~e~Gt~~eL~~~~-~~~~~-l~~~ 818 (1059)
|+|+|.|+.+|+.++. ..|.+ |+++
T Consensus 230 G~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 230 GRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred cEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 9999999999999764 44544 4443
No 309
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-33 Score=269.35 Aligned_cols=194 Identities=26% Similarity=0.409 Sum_probs=166.3
Q ss_pred cEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
.|++++++.+-+.. .+..+|++++|.|++||.+|||||||||||||+..+.|+-+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46677776665432 235789999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcccccc-cccCHHHHhccCCC-------CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 ---SIAYVSQTSWI-QSGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 ---~iayv~Q~pwi-~~~TIreNIlfg~~-------~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
+|++|.|...+ -|-|--||+..-.+ -..+.-++-+++.+|.+-+...| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 59999999875 57899999975322 12345678899999988888777 5799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHH-HhcCCCEEEEEcCCccccccCCeEEEEeCCeEEE
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM-AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~-~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e 798 (1059)
||||||+..+|+|++-||||-+||.+|+++|.+-.+. ..-.|.|.|+|||..+...+|||++-|++|+|++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999998754332 2347899999999999999999999999999986
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.7e-33 Score=291.75 Aligned_cols=160 Identities=27% Similarity=0.429 Sum_probs=136.5
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------eEEEEcccc--ccccc
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------------~iayv~Q~p--wi~~~ 672 (1059)
.++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 5699999999999999999999999999999999999999999999876 389999998 47889
Q ss_pred CHHHHhccCC---CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 673 TIreNIlfg~---~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
|++|||.++. ..++ ++.+++++..+|.+.... +..+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998753 1232 356677777777654443 346799999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc
Q 001528 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF 781 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~ 781 (1059)
||++||+.+.+.+. +.+.... +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~-~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQML-AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeecccc
Confidence 99999999999875 5565543 58999999999864
No 311
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-33 Score=276.83 Aligned_cols=200 Identities=26% Similarity=0.372 Sum_probs=168.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eEEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~iay 662 (1059)
+++.+++.+|++ ...+++|+||+++.||.+++.|++|+||||+|+.|.+++.|++|+|.++| +|+.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 567888889975 24589999999999999999999999999999999999999999999987 4777
Q ss_pred Eccccccc-ccCHHHHhccCCC-CC------HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh
Q 001528 663 VSQTSWIQ-SGSIRDNILYGKP-MD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1059)
Q Consensus 663 v~Q~pwi~-~~TIreNIlfg~~-~~------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 734 (1059)
++-+--|. .-|.||||.|-.. ++ +.+..+..+.-+|.+-+. .+-.++|-|+||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 77555554 5799999985332 22 456666666666655443 33456999999999999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.+||+||+||||+|+||.-+.+. |++.+.... .||++|+.||-++.++ -||+|+++++|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~-~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRK-FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHH-HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999886 566676654 5999999999999987 6999999999999999999998765
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-32 Score=359.47 Aligned_cols=203 Identities=24% Similarity=0.364 Sum_probs=176.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------eE
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~i 660 (1059)
..|+++|+++.|+++ ++++++|+||++++||+++|+|++|||||||+++|.|..+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 35799999999999999999999999999999999999999999999988 38
Q ss_pred EEEcccccccc-cCHHHHhccCCC---CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 001528 661 AYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1059)
Q Consensus 661 ayv~Q~pwi~~-~TIreNIlfg~~---~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 732 (1059)
+||||++.+++ .|++|||.|+.. .+ +++.++.++..+|.+.. ..+..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999998886 599999987421 22 34567777777775432 2445789999999999999
Q ss_pred HhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 733 Aly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|+..+|+++|||||||+||+...++++ +.+++..+|+|+|++||+++.+. .||+|++|++|++++.|+.++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999987 46766667999999999999875 5999999999999999999999765
No 313
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.6e-32 Score=274.73 Aligned_cols=141 Identities=33% Similarity=0.527 Sum_probs=130.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccccccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~~ 672 (1059)
++++|+++.|+. .++++|+||++++||.++|+|++|||||||+++|.|+++|.+|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999963 3699999999999999999999999999999999999999999999998 5999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCH
Q 001528 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1059)
Q Consensus 673 TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~ 752 (1059)
||||||||++||||+.++|+++|||||++++|+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 753 ~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
++...+. +.++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 104 ~~~~~l~-~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALE-EALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHH-HHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9998865 566654 5899999999999865 89999999986
No 314
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-33 Score=271.34 Aligned_cols=201 Identities=24% Similarity=0.436 Sum_probs=171.7
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
..++++|...+|.+ ..+|+++|++.++|+.+.|+|.|||||||+|++|-=+-.|.+|+|.++|
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46888999999865 3599999999999999999999999999999999999999999999987
Q ss_pred ------------eEEEEcccccccc-cCHHHHhc------cCCCCCH--HHHHHHHHHcCCchHHhcCCCCCCccccCCC
Q 001528 659 ------------SIAYVSQTSWIQS-GSIRDNIL------YGKPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1059)
Q Consensus 659 ------------~iayv~Q~pwi~~-~TIreNIl------fg~~~~~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 717 (1059)
+.+.|.|+.-+.+ .|+-||+. +|.+-++ |+-+.-+...++.+--+.-|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 3899999988875 69999985 4444322 45556677777766555444
Q ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
..|||||.||+|||||+.-+|+++|+||||||||++---.+. ++++.+ -.|||.++|||-+.+.++ +.+|+.+++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVL-kv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHH-HHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecce
Confidence 679999999999999999999999999999999999877765 566554 479999999999999887 57999999999
Q ss_pred EEEecChHHHHHc
Q 001528 796 ITQSGNYQELLLA 808 (1059)
Q Consensus 796 I~e~Gt~~eL~~~ 808 (1059)
|.|+|+++++..+
T Consensus 230 iEE~G~P~qvf~n 242 (256)
T COG4598 230 IEEEGPPEQVFGN 242 (256)
T ss_pred ecccCChHHHhcC
Confidence 9999999999865
No 315
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=9.7e-33 Score=313.04 Aligned_cols=170 Identities=30% Similarity=0.400 Sum_probs=146.5
Q ss_pred EEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------eEEEEccccccccc-CHHHHhccCCC---CC----HHH
Q 001528 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQSG-SIRDNILYGKP---MD----KAR 688 (1059)
Q Consensus 628 IvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------~iayv~Q~pwi~~~-TIreNIlfg~~---~~----~~~ 688 (1059)
|+||+|||||||+++|.|+++|++|+|.++| .++|++|++.+|.. |++|||.|+.. .+ +++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999999999999999987 38999999999965 99999998742 22 245
Q ss_pred HHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-
Q 001528 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1059)
Q Consensus 689 y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l- 767 (1059)
+.++++..+|.+..+.. ..+||||||||++||||+.++|+++|||||||+||+++.+.+. +.+....
T Consensus 81 ~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~ 148 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQE 148 (325)
T ss_pred HHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHH
Confidence 67788888876554443 4679999999999999999999999999999999999999875 5566554
Q ss_pred -CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 768 -EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 768 -~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
.|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+..
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 3899999999998864 59999999999999999999998653
No 316
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-33 Score=288.34 Aligned_cols=183 Identities=26% Similarity=0.458 Sum_probs=164.4
Q ss_pred ceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-----------------eEEEEcccccccc-cCHHH
Q 001528 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-GSIRD 676 (1059)
Q Consensus 615 ~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-----------------~iayv~Q~pwi~~-~TIre 676 (1059)
++||+.+....+|+-|+||||||||+++|.|+..|++|.|.++| +||||.|++-+|. -|||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68899988889999999999999999999999999999999998 5999999999996 59999
Q ss_pred HhccCCCC-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHH
Q 001528 677 NILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1059)
Q Consensus 677 NIlfg~~~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~ 755 (1059)
|+.||... +.+.+.++++.-++..-++..| .+||||+||||||+||++.+|+++|||||+|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999986 4678999999999999888887 68999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhc--CCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 756 ATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 756 ~~i~~~~i~~~l--~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
+.|.- .+..+. -+--++.|||.++. ++-||+|++|+||++...|.-+|..++.
T Consensus 165 ~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 88763 444433 24578999999976 6779999999999999999999988653
No 317
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=329.33 Aligned_cols=193 Identities=20% Similarity=0.362 Sum_probs=158.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|+++.|. .+|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998652 389999999999999999999999999999999999999999999976 2
Q ss_pred EEEEcccc---ccc-ccCHHHHhccCCCC------------CH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCC
Q 001528 660 IAYVSQTS---WIQ-SGSIRDNILYGKPM------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1059)
Q Consensus 660 iayv~Q~p---wi~-~~TIreNIlfg~~~------------~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~ 719 (1059)
++||+|++ -++ +-|++||+.++... ++ ++.+++++..++.. +-.+ ..-..
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~----~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSVN----QNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCcc----Ccccc
Confidence 89999984 355 46999999876321 11 23445555555431 1112 33456
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccc-ccCCeEEEEeCCeEE
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQIT 797 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~ 797 (1059)
|||||||||+||||+..+|+|+|||||||+||..+.+.+. +.++.+ .+|+|+|+|||+++.+ ..||+|++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY-KVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999876 566554 3589999999999876 569999999999999
Q ss_pred EecCh
Q 001528 798 QSGNY 802 (1059)
Q Consensus 798 e~Gt~ 802 (1059)
+.|+.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88765
No 318
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.3e-32 Score=359.36 Aligned_cols=203 Identities=22% Similarity=0.347 Sum_probs=173.3
Q ss_pred cEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC---CCccEEEEcC---------eE
Q 001528 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~---~~~G~I~v~g---------~i 660 (1059)
.++++|++++|+.+ .++++|+|+|+++++||++||+||+|||||||+++|.|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632 23579999999999999999999999999999999999997 6889999998 38
Q ss_pred EEEccccc-ccccCHHHHhccCC----C--CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 661 AYVSQTSW-IQSGSIRDNILYGK----P--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 661 ayv~Q~pw-i~~~TIreNIlfg~----~--~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
+||+|++. +.+.|+|||+.|+. | .++ ++.+++++..+|.+ -.++.||+.|.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999864 66789999999852 1 222 34567777776643 3588999999999999999999
Q ss_pred HHHHhhcCCC-EEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccc--cccCCeEEEEeCC-eEEEecChHH
Q 001528 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEGG-QITQSGNYQE 804 (1059)
Q Consensus 730 LARAly~~~~-IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~--l~~aD~Iivl~~G-~I~e~Gt~~e 804 (1059)
||||+.++|+ |++||||||+||++++.++. +.++++ .+|+|+|++||+++. ...+|+|++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~-~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSIC-KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 99999999999999999876 566654 478999999999986 3679999999997 9999998754
No 319
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=279.47 Aligned_cols=206 Identities=23% Similarity=0.391 Sum_probs=169.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.+..+|...+|.. +++.+|+||++++||.|++.||+|+||||....+.|+.+|++|+|.++| .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 3677888888864 5799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEccccccccc-CHHHHhccCCCCCH---HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh
Q 001528 660 IAYVSQTSWIQSG-SIRDNILYGKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1059)
Q Consensus 660 iayv~Q~pwi~~~-TIreNIlfg~~~~~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 735 (1059)
|+|.||+|-||.+ ||+|||.--.++.+ ++-++-.+.-+|.+++. ....-..+|.+||||+|.|+-||||+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-----i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-----ITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-----hHHHhcCcccccccchHHHHHHHHHHh
Confidence 9999999999986 99999986554322 21122222223333333 122334679999999999999999999
Q ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCc-cccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 736 ~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l-~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.+|+.+||||||+++|+-.-..| ++.+..+. +|--+++.-|++ +++.-||+.+++.+|+|..+|+++|+.++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999998886 66665543 466667777887 57999999999999999999999999865
No 320
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.98 E-value=4.4e-32 Score=334.43 Aligned_cols=201 Identities=25% Similarity=0.393 Sum_probs=172.4
Q ss_pred cEEEEeeeEeeCCCC-CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~-~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
.++++|+++.|+..+ ..++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24799999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcccccccc-cCHHHHhccCCC----C---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP----M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 ---~iayv~Q~pwi~~-~TIreNIlfg~~----~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
.++|++|++.++. .|+.||+.++.. . .+++..+.++.++|.+.++. +..+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence 3799999999986 599999986421 1 13355666777766654443 345899999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHH
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
++||||+.++|+++||||||++||+++.+.+. +.+..+. +++|+|++||+.+.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~-~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999875 5666554 589999999999999899999999999999999998875
No 321
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=2.5e-32 Score=328.82 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=161.2
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-CccEEEEcC--------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-~~G~I~v~g-------------- 658 (1059)
.++++|++++|+.+.+.++|+|+||+|++||+++|+||+|||||||+++|.|.++| .+|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432234699999999999999999999999999999999999985 899999876
Q ss_pred eEEEEcccc---ccc-ccCHHHHhccCCC--------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 SIAYVSQTS---WIQ-SGSIRDNILYGKP--------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 ~iayv~Q~p---wi~-~~TIreNIlfg~~--------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
+++||+|++ .++ +.|++||+.++.. .+ +++.+++++.+++.++. .......|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTAS----------PFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCC----------ccCccccCCH
Confidence 289999996 344 4699999988521 12 23455666666653211 1123457999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
|||||++||||+..+|+++||||||++||..+.+.+. +.+..+ -+|+|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY-KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999876 456554 35899999999999875 59999999999999876
Q ss_pred ChH
Q 001528 801 NYQ 803 (1059)
Q Consensus 801 t~~ 803 (1059)
+-+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 543
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4.8e-32 Score=287.65 Aligned_cols=192 Identities=25% Similarity=0.384 Sum_probs=160.7
Q ss_pred cEEEEeeeEeeCCCC------CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-EEEEccc
Q 001528 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQT 666 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~------~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~-iayv~Q~ 666 (1059)
-++++|++..|+... ...+++||||+|++||.+++||.|||||||+.++|+|+++|++|+|..+|+ +.-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888886432 136899999999999999999999999999999999999999999999984 21111
Q ss_pred ccccccCHHHHhccCCCCCHHHHHHHHHHcCCchH-HhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 667 pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
+.-..+++.+.++.++|.++ +...| ..|||||||||+||||+.-+|+++++||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 22234779999999999875 44555 5699999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHcC-chHHH
Q 001528 746 PFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~-~~~~~ 814 (1059)
|+||||.-+..+|. +.+..+ ..|-|.++|||.++..++ +|+|.||..|+|+|.|+-+|+.++. ..|.+
T Consensus 136 pvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 136 PVSALDVSVQAQIL-NLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred chhhcchhHHHHHH-HHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 99999999999986 455443 358899999999999876 8999999999999999999998754 34544
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=4.1e-32 Score=326.76 Aligned_cols=193 Identities=23% Similarity=0.418 Sum_probs=159.9
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|+++ ++|+|+||+|++||+++|+||+|||||||+++|.|.++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588898873 369999999999999999999999999999999999999999999977 2
Q ss_pred EEEEcccc---cc-cccCHHHHhccCCC---------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 660 IAYVSQTS---WI-QSGSIRDNILYGKP---------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 660 iayv~Q~p---wi-~~~TIreNIlfg~~---------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
++||||+| .+ .+.|++||+.++.. .+ +++.+++++.++|.++ ........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP----------SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCC----------CccCchhhCCH
Confidence 89999997 34 45799999987421 11 2345556666655211 12344567999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~G 800 (1059)
|||||++||||+..+|+++||||||++||+.+.+.+. +.++... +|+|+|++||+++.+. .||+|++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999876 5665543 5899999999999864 59999999999999999
Q ss_pred ChHHH
Q 001528 801 NYQEL 805 (1059)
Q Consensus 801 t~~eL 805 (1059)
+.+++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.2e-32 Score=324.66 Aligned_cols=195 Identities=22% Similarity=0.356 Sum_probs=161.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|+++. .+++|+||+|++||+++|+||+|||||||+++|+|+.+|.+|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5888888742 489999999999999999999999999999999999999999999976 2
Q ss_pred EEEEcccc----cccccCHHHHhccCCC---------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 660 IAYVSQTS----WIQSGSIRDNILYGKP---------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 660 iayv~Q~p----wi~~~TIreNIlfg~~---------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
++|++|+| ...+.|+.||+.++.. ++ +++.++.++.+++.++. ......+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS----------REQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC----------ccCccccCCH
Confidence 79999997 3445899999987531 01 23455666666653211 1233458999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~G 800 (1059)
|||||++||||+..+|+++||||||++||..+.+.+. +++..+. +|+|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999876 5665543 589999999999987 559999999999999999
Q ss_pred ChHHHH
Q 001528 801 NYQELL 806 (1059)
Q Consensus 801 t~~eL~ 806 (1059)
+.+|..
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 987754
No 325
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.3e-31 Score=351.42 Aligned_cols=205 Identities=19% Similarity=0.289 Sum_probs=175.4
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------------e
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------S 659 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------~ 659 (1059)
+..++++|++++|+.. ..++++|+||+|++||+++|+|++|||||||+++|.|+.+|++|+|.++| .
T Consensus 1935 ~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 3569999999999642 35799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEcccccccc-cCHHHHhccCC---CCC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 660 IAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 660 iayv~Q~pwi~~-~TIreNIlfg~---~~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
||||||++-++. -|++||+.+.. ... +++.+++++.++|.+..+. +...||||||||+++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 899999988775 69999997531 122 2345667888888654433 3467999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHcC
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
||+..+|+|++||||||+||++..+.++ +.+.+. .+|+|+|++||+++.+. -||+|++|++|+++..|+.++|..+-
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999987 566654 36899999999999875 59999999999999999999997653
No 326
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=270.31 Aligned_cols=199 Identities=30% Similarity=0.440 Sum_probs=165.1
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
|+.+|++++-. .+..|++++|++++||.+||+||+|+||||||++|.||+.|.+|++.++| +-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 56788888764 35799999999999999999999999999999999999999999999998 379
Q ss_pred EEcccccc-cccCHHHHhccCCC-C----C--HHH--HHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 662 YVSQTSWI-QSGSIRDNILYGKP-M----D--KAR--YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 662 yv~Q~pwi-~~~TIreNIlfg~~-~----~--~~~--y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
..||+..+ |.=|++|-+.+|+- . + +++ .++++.+|++ ..|..-| =..||||++|||.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~----~~la~R~-------y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGLAGRD-------YRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh----hhhhccc-------hhhcCchHHHHHHHH
Confidence 99998776 89999999999863 2 2 222 4556666644 4444333 346999999999999
Q ss_pred HHhhc------CCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChH
Q 001528 732 RAVYN------DADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 732 RAly~------~~~IllLDdp~SAlD~~t~~~i~~~~i~~-~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|.+.+ ++.+++|||||||||.+-..++++ ..+. ..+|-.|+.|-|++... ..||+|++|.+||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 345889999999999999888875 3333 34688999999999984 679999999999999999999
Q ss_pred HHHHc
Q 001528 804 ELLLA 808 (1059)
Q Consensus 804 eL~~~ 808 (1059)
|.+..
T Consensus 227 ~vlt~ 231 (259)
T COG4559 227 DVLTD 231 (259)
T ss_pred HhcCH
Confidence 98754
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.8e-31 Score=322.94 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=165.0
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccc-cc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~p-wi 669 (1059)
..++++|++++|+. .++|+|+||+|++|++++|+|++|||||||+++|.|.++|++|+|.+++ +|||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 35999999999953 4699999999999999999999999999999999999999999999965 599999997 55
Q ss_pred c-ccCHHHHhccCCCC-----CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 670 Q-SGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 670 ~-~~TIreNIlfg~~~-----~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
+ +-|++||+.++... ++++.+++++..++.++. ...+..+||||||||++||||+..+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 45999999876421 233445566666654321 1123457999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeC-CeEE-EecChHHHHHc
Q 001528 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~-G~I~-e~Gt~~eL~~~ 808 (1059)
||||++||+.+...+. +.+... + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 470 DEPt~~LD~~~~~~l~-~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALE-EALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHH-HHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999875 566554 4 499999999998754 999999986 7876 48898887654
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.6e-32 Score=259.29 Aligned_cols=198 Identities=29% Similarity=0.443 Sum_probs=167.4
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
+|.+++.+|.|.. ..+|.||+|+.+.|+.+.+.||||+|||||++.|-=+--|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5889999999974 3689999999999999999999999999999998776778899998865
Q ss_pred ----eEEEEcccccccc-cCHHHHhcc------CCCCCH--HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 ----SIAYVSQTSWIQS-GSIRDNILY------GKPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 ----~iayv~Q~pwi~~-~TIreNIlf------g~~~~~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.++.|.|+-.+.. -|+-||+.= |.+-++ .+-.+.++.-.|.+.-+.+| ..|||||.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 4999999988875 599999852 333222 34455666777777766666 67999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~ 803 (1059)
|||+||||+.-+|+++++||||+|||++...++. +.|+++- .|-|-++|||.+++.++ |.+|+.|++|+|+|+|+++
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv-~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH-HHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988886 4666654 58899999999999765 8999999999999999977
Q ss_pred HHH
Q 001528 804 ELL 806 (1059)
Q Consensus 804 eL~ 806 (1059)
-.-
T Consensus 227 ~ft 229 (242)
T COG4161 227 CFT 229 (242)
T ss_pred hcc
Confidence 654
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=3.1e-31 Score=322.50 Aligned_cols=200 Identities=22% Similarity=0.366 Sum_probs=164.5
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccc-cc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~p-wi 669 (1059)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+.+|.+|+|.+++ +|+|++|++ .+
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 45899999999953 4699999999999999999999999999999999999999999999965 599999997 35
Q ss_pred c-ccCHHHHhccCCC---CC--HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 670 Q-SGSIRDNILYGKP---MD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 670 ~-~~TIreNIlfg~~---~~--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
+ +.|++||+.++.. .+ +.+.+++++..++.++. ......+||||||||++||||+..+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 5 4699999988643 11 33445566666664321 1233467999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeC-CeEE-EecChHHHHHc
Q 001528 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~-G~I~-e~Gt~~eL~~~ 808 (1059)
||||++||..+.+.+. +.+... + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+.
T Consensus 468 DEPt~~LD~~~~~~l~-~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 468 DEPTNDLDVETLRALE-EALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred eCCCCCCCHHHHHHHH-HHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999999875 566654 3 499999999998765 899999987 5876 56888776543
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.7e-31 Score=326.26 Aligned_cols=198 Identities=24% Similarity=0.406 Sum_probs=165.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccccc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~ 670 (1059)
..++++|++++|+++ .++|+|+||+|++|++++|+||+|||||||+++|.|+++|.+|+|.+++ +|+|++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 458999999999532 3689999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred ccCHHHHhccC-----CCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 671 SGSIRDNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 671 ~~TIreNIlfg-----~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
..++.+|+.+. ...++++++++++..++.++... ....+||||||||++||||++++|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 44666664321 12457888999999988754322 2356899999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEE-EecChHHHH
Q 001528 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~ 806 (1059)
||++||.++...+. +.+... + .|+|+|||+++++.. ||+|++|++|+++ ..|++++..
T Consensus 654 PT~~LD~~s~~~l~-~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALI-QGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHH-HHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999988865 445443 3 499999999999865 9999999999998 678888753
No 331
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=278.40 Aligned_cols=199 Identities=24% Similarity=0.398 Sum_probs=169.8
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------------E
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------I 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------------i 660 (1059)
++.++++.+|.. -.+++|+||++++||.++++||+||||||++++|.|.|+|++|+|..+|. |
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 567888888853 46999999999999999999999999999999999999999999999883 8
Q ss_pred EEEccccccccc-CHHHHhccCCC-------------C--C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~-------------~--~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L 720 (1059)
+--.|.+-+|++ |+-||++.|.. + + .|+-.+.++.++|.+.- .+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcC
Confidence 999999999975 99999987622 1 1 13444556666665533 3556789
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccc-ccCCeEEEEeCCeEE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQIT 797 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~ 797 (1059)
|+||+.|+.||||+..+|++++||||.+++.+.-..++. +.|..+. .|.|+++|-|+++.+ .-||+|+||+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999888876 5676665 358999999999985 569999999999999
Q ss_pred EecChHHHHHc
Q 001528 798 QSGNYQELLLA 808 (1059)
Q Consensus 798 e~Gt~~eL~~~ 808 (1059)
.+|+++|..++
T Consensus 230 AeG~P~eV~~d 240 (250)
T COG0411 230 AEGTPEEVRNN 240 (250)
T ss_pred ccCCHHHHhcC
Confidence 99999998765
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=323.72 Aligned_cols=198 Identities=21% Similarity=0.416 Sum_probs=166.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccc--
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~p-- 667 (1059)
+..|+++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ +++|++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 346999999999953 4699999999999999999999999999999999999999999999964 699999975
Q ss_pred ccc-ccCHHHHhc-cCCCCCHHHHHHHHHHcCCchH-HhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEc
Q 001528 668 WIQ-SGSIRDNIL-YGKPMDKARYDKAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1059)
Q Consensus 668 wi~-~~TIreNIl-fg~~~~~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1059)
.+. +.|+.+|+. +.....+++..++++..++..+ .. .+..+||||||||++||||++++|+++|||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 343 348888874 2222345677788888877542 22 234579999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEE-EecChHHHH
Q 001528 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~-e~Gt~~eL~ 806 (1059)
|||++||..+...+. +.+... . .|+|+|||+..++.. ||+|++|++|+++ ..|+|++..
T Consensus 456 EPt~~LD~~~~~~l~-~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 456 EPTNHLDLDMRQALT-EALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCCHHHHHHHH-HHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999998864 667665 4 499999999999865 9999999999997 789999874
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=2.3e-31 Score=320.58 Aligned_cols=194 Identities=19% Similarity=0.371 Sum_probs=158.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------e
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------~ 659 (1059)
.++++|++. .+|+|+||+|++|++++|+||+|||||||+++|.|.++|.+|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588898883 259999999999999999999999999999999999999999999877 3
Q ss_pred EEEEcccc---ccc-ccCHHHHhccC----CCC--C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 660 IAYVSQTS---WIQ-SGSIRDNILYG----KPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 660 iayv~Q~p---wi~-~~TIreNIlfg----~~~--~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
|+|+||++ -++ +.|+.||+... .+. + +++.+++++.+++.. + ....+...||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------N----HAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------C----CccCccccCCcHHH
Confidence 89999986 244 45999998532 011 1 233455566655531 1 12234567999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChH
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~ 803 (1059)
||++||||+..+|+|+||||||++||+.+.+.+. +.+..+. +|+|+|+|||+++.+. .||+|++|++|+++..|+.+
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999876 4565543 5899999999999975 49999999999999999887
Q ss_pred HHH
Q 001528 804 ELL 806 (1059)
Q Consensus 804 eL~ 806 (1059)
++.
T Consensus 489 ~~~ 491 (510)
T PRK15439 489 AIN 491 (510)
T ss_pred cCC
Confidence 765
No 334
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.3e-31 Score=291.26 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=151.0
Q ss_pred EeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEE-----------EcC--------
Q 001528 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG-------- 658 (1059)
Q Consensus 598 ~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~-----------v~g-------- 658 (1059)
.|++++|++. .++|+|+| .+++||+++|+||+|||||||+++|+|.++|++|+|. ++|
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3678888532 36999999 4999999999999999999999999999999999995 444
Q ss_pred -------eEEEEcccccccccCHHHHhccCC-CC-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 001528 659 -------SIAYVSQTSWIQSGSIRDNILYGK-PM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~~TIreNIlfg~-~~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 729 (1059)
.++|++|.+.+++.++.+||.+.. .. .+++..++++.+++.+. ...+..+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 268888887777666666655431 12 34677888888876543 23456789999999999
Q ss_pred HHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
||||++++|+++|||||||+||+++.+.+. +.++... +++|+|++||+++.+.. ||+|++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAA-RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 999999999999999999999999998875 5666554 47999999999999874 9999999 46676544
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3e-31 Score=273.25 Aligned_cols=145 Identities=27% Similarity=0.342 Sum_probs=128.6
Q ss_pred EeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-eEEEEcccccccccCHHH
Q 001528 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1059)
Q Consensus 598 ~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-~iayv~Q~pwi~~~TIre 676 (1059)
.|++++|+. .++++| ++++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 467888853 468888 499999999999999999999999999999999999999998 5999999753
Q ss_pred HhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHH
Q 001528 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1059)
Q Consensus 677 NIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~ 756 (1059)
||||||||++||||+.++|++++|||||++||.++.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-C-CCEEEEEcCCccccc-cCCeEEEEeCCeEEE
Q 001528 757 TLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1059)
Q Consensus 757 ~i~~~~i~~~l-~-~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 798 (1059)
.+. +.+.... + ++|+|+|||+++.+. .||+|++|+++-.+.
T Consensus 109 ~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 109 NAA-RAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred HHH-HHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 875 4565543 4 489999999999987 599999999886653
No 336
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=302.09 Aligned_cols=194 Identities=27% Similarity=0.393 Sum_probs=165.0
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------- 659 (1059)
.-++++|++.+|+. .++|+|+||++.+||.+|++|.+|+|||||++.|.|-|+|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35789999999974 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccccccc-ccCHHHHhccCCCC-------CHHHHH----HHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 660 -IAYVSQTSWIQ-SGSIRDNILYGKPM-------DKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 660 -iayv~Q~pwi~-~~TIreNIlfg~~~-------~~~~y~----~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
|+.|.|+.-+. |-||.|||-+|++. |..+.+ ++++..++. ..-+|.| .+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v----~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLV----GDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhh----hhCCHHHHH
Confidence 99999999876 56999999988763 333333 333333332 1134444 469999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecC
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt 801 (1059)
-|+||||+..+++|+|||||||||+.+-.+++|+ .++.+. +|.++|+||||++.+ .-||+|.||+||+.+..++
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999984 566654 899999999999875 6699999999999988776
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=5.3e-31 Score=319.50 Aligned_cols=193 Identities=22% Similarity=0.321 Sum_probs=164.1
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccc-cc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi-~~ 671 (1059)
..++++|++++|+. ..|+++|++|++||.++|+|++|||||||+++|.|+++|++|+|.++-+++|+||++-+ ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 35899999999953 35999999999999999999999999999999999999999999988789999999764 57
Q ss_pred cCHHHHhccCCC-CC-HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcc
Q 001528 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 672 ~TIreNIlfg~~-~~-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SA 749 (1059)
.|++||+.++.. ++ +.+..++++..+|.+..+ ..-.+||||||||++||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 799999987632 32 345677888888864433 23457999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 750 VDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 750 lD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||..+...+. +.++.+. .++|+|+|||+++.+. .||+|++|++ ++...|+.
T Consensus 484 LD~~~~~~l~-~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 484 LDVEQRLAVA-KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999998875 5676653 3899999999999875 5999999965 88777763
No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.8e-31 Score=317.88 Aligned_cols=193 Identities=24% Similarity=0.404 Sum_probs=157.9
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-CccEEEEcC-------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-~~G~I~v~g------------- 658 (1059)
..++++|++++|+. .++|+|+||++++||+++|+||+|||||||+++|.|+.++ .+|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 45999999999963 3699999999999999999999999999999999998876 699999876
Q ss_pred -eEEEEccccccc---ccCHHHHhccCC--------CCC---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChH
Q 001528 659 -SIAYVSQTSWIQ---SGSIRDNILYGK--------PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1059)
Q Consensus 659 -~iayv~Q~pwi~---~~TIreNIlfg~--------~~~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGG 723 (1059)
+++|++|++.++ ..|++||+.++. ... +++.+++++.++|.++.. ..+..+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA----------DAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc----------cCchhhCCHH
Confidence 289999998654 247888775431 011 345677788887764221 1334679999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCC-EEEEEcCCcccccc--CCeEEEEeCCeEEEe
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKK-TVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~k-TvIlVTH~l~~l~~--aD~Iivl~~G~I~e~ 799 (1059)
||||++||||+..+|+++||||||++||+++.+.+. +.+.... +++ |+|+|||+++.+.. ||++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999876 5665553 344 69999999999874 799999999998763
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.2e-31 Score=270.68 Aligned_cols=149 Identities=26% Similarity=0.452 Sum_probs=123.9
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------EEEEcccccccccCHHHHhcc
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------iayv~Q~pwi~~~TIreNIlf 680 (1059)
..++|+|+||++++|++++|+||+|||||||++++++ .+|++.++|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4578999999999999999999999999999999974 5899988764 445444
Q ss_pred CCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC--CCEEEEcCCCcccCHHHHHHH
Q 001528 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1059)
Q Consensus 681 g~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~--~~IllLDdp~SAlD~~t~~~i 758 (1059)
.++++..+|.++ ....+..+||||||||++||||++++ |+++||||||++||+++.+.+
T Consensus 68 ---------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 244554444321 24567789999999999999999999 999999999999999999987
Q ss_pred HHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeE
Q 001528 759 FNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 759 ~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I 796 (1059)
. +.+.... +|+|+|+|||+++.+..||+|++|++|+.
T Consensus 129 ~-~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 L-EVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred H-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 5 4565544 58999999999999999999999976543
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=283.19 Aligned_cols=208 Identities=23% Similarity=0.420 Sum_probs=171.7
Q ss_pred CcEEEEeeeEeeCCCC--------CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC------
Q 001528 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~--------~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------ 658 (1059)
.-++.+|+...|+-++ ...+.++|||+.++||.++|||.||||||||-.+|+++.++. |+|..+|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4577788888776432 234789999999999999999999999999999999999887 9999887
Q ss_pred ----------eEEEEcccccc---cccCHHHHhccCC----C-CC----HHHHHHHHHHcCCchHHh-cCCCCCCccccC
Q 001528 659 ----------SIAYVSQTSWI---QSGSIRDNILYGK----P-MD----KARYDKAIKACALDKDIN-NFDHGDLTEIGQ 715 (1059)
Q Consensus 659 ----------~iayv~Q~pwi---~~~TIreNIlfg~----~-~~----~~~y~~vl~ac~L~~di~-~Lp~Gd~T~IGe 715 (1059)
++-.|.|+|+= -..||.+-|.=|. | .+ +++..++++.++|++... ..|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 48999999982 2468888876543 2 11 366777888899987643 444
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccccc-CCeEEEEe
Q 001528 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
..+|||||||||||||+.-+|.+++|||||||||..+..+|.+ .++.+ ..|-+-++|+|.+..++. ||+|+||+
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 4689999999999999999999999999999999999999874 55443 357799999999999865 99999999
Q ss_pred CCeEEEecChHHHHHcC-chHH
Q 001528 793 GGQITQSGNYQELLLAG-TAFE 813 (1059)
Q Consensus 793 ~G~I~e~Gt~~eL~~~~-~~~~ 813 (1059)
||+|+|+|+-+++.++. .+|.
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHH
Confidence 99999999999998764 4454
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.8e-30 Score=320.07 Aligned_cols=199 Identities=24% Similarity=0.419 Sum_probs=163.6
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccc-cc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~p-wi 669 (1059)
..++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++. .|+|++|++ -+
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAEL 394 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccccc
Confidence 45899999999963 4699999999999999999999999999999999999999999999843 599999986 34
Q ss_pred c-ccCHHHHhccCCC-C--C--HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 670 Q-SGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 670 ~-~~TIreNIlfg~~-~--~--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
+ +.|+.||+.++.+ . + +++..+.++..++..+.. + .+...||||||||++||||+.++|+++||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA------M----TPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH------h----ChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4599999987642 1 2 344556666666643211 1 23357999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc-cCCeEEEEe-CCeEEE-ecChHHHHH
Q 001528 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE-GGQITQ-SGNYQELLL 807 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~-~aD~Iivl~-~G~I~e-~Gt~~eL~~ 807 (1059)
||||++||..+...+ .+.+... +.|+|+|||+.+++. -||+|++|+ +|++.+ .|+|++.++
T Consensus 465 DEPt~~LD~~~~~~l-~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 465 DEPTNDLDVETLELL-EELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred cCCCCCCCHHHHHHH-HHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999998765 4566554 459999999999985 499999998 899875 789988753
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-30 Score=317.37 Aligned_cols=198 Identities=23% Similarity=0.374 Sum_probs=158.0
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccccccc
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~~ 672 (1059)
|.++|++++|+. +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| .++|++|++..+..
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 689999999963 4699999999999999999999999999999999999999999999987 58999997654556
Q ss_pred CHHHHhccCCC---------------------------------C-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCC
Q 001528 673 SIRDNILYGKP---------------------------------M-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1059)
Q Consensus 673 TIreNIlfg~~---------------------------------~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 718 (1059)
|+.+++.-+.. + .++++.++++..++.++ .....-.
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~ 148 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE----------QLERPVS 148 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch----------hhcCchh
Confidence 76665532100 0 11233444444444311 1123346
Q ss_pred CCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEE
Q 001528 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1059)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~ 797 (1059)
+|||||||||+||||+..+||++||||||++||.++...+. +.+... +.|+|+|||+.+++.+ ||+|++|++|++.
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~-~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE-KWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 79999999999999999999999999999999999998764 556553 5799999999999865 8999999999996
Q ss_pred -EecChHHHHHc
Q 001528 798 -QSGNYQELLLA 808 (1059)
Q Consensus 798 -e~Gt~~eL~~~ 808 (1059)
..|+|++....
T Consensus 226 ~~~g~~~~~~~~ 237 (638)
T PRK10636 226 EYTGNYSSFEVQ 237 (638)
T ss_pred EecCCHHHHHHH
Confidence 58999987653
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=265.06 Aligned_cols=199 Identities=29% Similarity=0.462 Sum_probs=171.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~ia 661 (1059)
|+++|++.+|.. ..+++|+|++||+|++++++||+|+||||||+.+.+++++++|+|.++| .++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999964 5799999999999999999999999999999999999999999999998 378
Q ss_pred EEcccccccc-cCHHHHhccCC-CC--------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 001528 662 YVSQTSWIQS-GSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1059)
Q Consensus 662 yv~Q~pwi~~-~TIreNIlfg~-~~--------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 731 (1059)
..-|+..+.. -||||=+.||+ || |+..++++++--.|.+ |.+.+. -.||||||||.=+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dryL-------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDRYL-------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHHhH-------Hhcccchhhhhhhh
Confidence 8899888764 69999999997 44 3456777887766543 333333 35999999999999
Q ss_pred HHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecChHHHHHc
Q 001528 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 732 RAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
-.+.+|.|-++||||+.+||.+-+..+++ .++.+. -|||+|+|-|...+.. .+|+|+-|+||+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999998888764 454432 4899999999999964 5899999999999999999999865
No 344
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=311.49 Aligned_cols=196 Identities=22% Similarity=0.360 Sum_probs=155.9
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------- 659 (1059)
..|+++|+++.+ .++|+|+||++++||+++|+|++|||||||+++|.|+.+|.+|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 358999999873 25899999999999999999999999999999999999999999999871
Q ss_pred -EEEEccccc---cc-ccCHHHHhccC-----CC----CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 660 -IAYVSQTSW---IQ-SGSIRDNILYG-----KP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 660 -iayv~Q~pw---i~-~~TIreNIlfg-----~~----~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
++|++|++- ++ +.|+.+|+.+. .+ .+ +++.+++++..++.++ .......+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 393 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP----------GHRTQIGSLS 393 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC----------CcccccccCC
Confidence 899999853 34 46777774332 11 12 1233444444433211 1234557899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEe
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~ 799 (1059)
||||||++||||+.++|+|+||||||++||+.+.+.+. +.+..+. +|+|+|+|||+++.+. .||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~-~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY-QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHH-HHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999986 4565543 6899999999999874 5999999999999987
Q ss_pred cChHH
Q 001528 800 GNYQE 804 (1059)
Q Consensus 800 Gt~~e 804 (1059)
++.++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 76543
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=5.4e-30 Score=335.53 Aligned_cols=203 Identities=25% Similarity=0.398 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCC----------CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC--CCccEEEEcC---
Q 001528 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG--- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~----------~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~--~~~G~I~v~g--- 658 (1059)
.+.++|+++..+.. +...+|+|+|+++++|+++||+||+|||||||+++|.|..+ +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887531 12469999999999999999999999999999999999976 3789999987
Q ss_pred -------eEEEEcccccccc-cCHHHHhccCC----C--CCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCC-CC
Q 001528 659 -------SIAYVSQTSWIQS-GSIRDNILYGK----P--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1059)
Q Consensus 659 -------~iayv~Q~pwi~~-~TIreNIlfg~----~--~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G-~~ 719 (1059)
.+|||+|++.++. .|++||+.|+. | .++ ++.+++++..+|.+. .++.||..| ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 2899999986654 69999998752 1 222 235678888877542 367777655 57
Q ss_pred CChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccc--cccCCeEEEEeC-Ce
Q 001528 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEG-GQ 795 (1059)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~--l~~aD~Iivl~~-G~ 795 (1059)
||||||||++||||+..+|+|++||||||+||++++.++. +.++.+ .+|+|+|++||+++. ...+|++++|++ |+
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~-~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 9999999999999999999999999999999999999876 456554 368999999999984 578999999986 89
Q ss_pred EEEecChHH
Q 001528 796 ITQSGNYQE 804 (1059)
Q Consensus 796 I~e~Gt~~e 804 (1059)
+++.|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998653
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.5e-30 Score=315.13 Aligned_cols=196 Identities=26% Similarity=0.408 Sum_probs=157.1
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--EEEEcccccc-c
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--iayv~Q~pwi-~ 670 (1059)
.++++|++++|+. .++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999874 7999997643 3
Q ss_pred ccCHHHHhccCCC----------------------------------------C-CHHHHHHHHHHcCCchHHhcCCCCC
Q 001528 671 SGSIRDNILYGKP----------------------------------------M-DKARYDKAIKACALDKDINNFDHGD 709 (1059)
Q Consensus 671 ~~TIreNIlfg~~----------------------------------------~-~~~~y~~vl~ac~L~~di~~Lp~Gd 709 (1059)
.+|+.+++..+.. + .++++.++++..++. .
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---------~ 150 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---------P 150 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---------C
Confidence 4677777542210 0 012223333333321 1
Q ss_pred CccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeE
Q 001528 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI 788 (1059)
Q Consensus 710 ~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~I 788 (1059)
...-..|||||||||+||||+..+|+|+||||||++||.++...+. +.+... +.|+|+|||+..++.. ||+|
T Consensus 151 ----~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~-~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 151 ----DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE-GFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred ----CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 2334679999999999999999999999999999999999998864 566554 3699999999999865 8999
Q ss_pred EEEeCCeEE-EecChHHHHHc
Q 001528 789 LVLEGGQIT-QSGNYQELLLA 808 (1059)
Q Consensus 789 ivl~~G~I~-e~Gt~~eL~~~ 808 (1059)
++|++|+++ ..|+|++.++.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 999999997 46999987654
No 347
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=284.55 Aligned_cols=191 Identities=26% Similarity=0.421 Sum_probs=167.7
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------- 659 (1059)
..+++++.+..|+ +..+++||||+|++||..|+.|.+|+|||||.+.|.|.|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999997 357899999999999999999999999999999999999999999999994
Q ss_pred -EEEEcccccccc-cCHHHHhccCCCC------C----HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 660 -IAYVSQTSWIQS-GSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 660 -iayv~Q~pwi~~-~TIreNIlfg~~~------~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
|+.|.|++-++. -|+.|||..|.+- | +++.++..+..+|.-|.+ ++-..||-||+||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 999999999885 5999999999862 2 467777788887766544 3456799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEeCCeEEE
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e 798 (1059)
|.|=+|||++|+++|||||||-|-+.-.+++|+ .++.+ -.|||+|+|||++..+. -||++-||++|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999885 45443 47999999999998765 499999999999864
No 348
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.3e-29 Score=254.94 Aligned_cols=141 Identities=40% Similarity=0.624 Sum_probs=126.9
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-------------EEEE
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~-------------iayv 663 (1059)
++|+++.|+. .++++++|+++++|+.++|+|++|||||||+++|.|++++.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6889999964 36999999999999999999999999999999999999999999999873 5666
Q ss_pred cccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 664 ~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
+| ||||||||++||||+..+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 66 999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEEeCCe
Q 001528 744 DDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl~~G~ 795 (1059)
||||++||.++...+. +.+.... +++|+|++||+.+.++. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999988765 5665543 35899999999999888 59999999985
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=7e-29 Score=258.28 Aligned_cols=188 Identities=27% Similarity=0.367 Sum_probs=161.4
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccc--ccccccCHHHHhcc-----C
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT--SWIQSGSIRDNILY-----G 681 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~--pwi~~~TIreNIlf-----g 681 (1059)
...+|+||||++++||.++|+|++|||||||++.|.|-++|++|+|.++|+|++.--- ..-.+.|-||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3578999999999999999999999999999999999999999999999999865443 33445799999974 2
Q ss_pred C--CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHH
Q 001528 682 K--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1059)
Q Consensus 682 ~--~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~ 759 (1059)
- ..-+++++++++-+.|.+++.. | -.+.|-|.+.|++.|=|...+|||||+||.+|..|+.=.++=.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 2 2346889999999999888763 3 4689999999999999999999999999999999998766533
Q ss_pred HHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 760 NECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 760 ~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
+ -+.+. .+++|+|+|||+++.+++ ||++++|++|+|...|+.+|..+.
T Consensus 188 ~-rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 188 E-RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred H-HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 2 23444 689999999999999865 999999999999999999998853
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=2.5e-29 Score=330.72 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=158.2
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC----CCCccEEEEcC------------eEEEEcccccccc-c
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWIQS-G 672 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~----~~~~G~I~v~g------------~iayv~Q~pwi~~-~ 672 (1059)
+++|+|+|+++++||+++|+||+||||||||++|.|.. .|.+|+|.++| .++||+|++.++. -
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56899999999999999999999999999999999986 46899999987 2899999987765 5
Q ss_pred CHHHHhccCCC----------CCHHHH-----HHHHHHcCCchHHhcCCCCCCccccCC-CCCCChHHHHHHHHHHHhhc
Q 001528 673 SIRDNILYGKP----------MDKARY-----DKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYN 736 (1059)
Q Consensus 673 TIreNIlfg~~----------~~~~~y-----~~vl~ac~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~ 736 (1059)
|++||+.|+.. .+++++ +.+++..+| .+--+|.||++ ...|||||||||+||||+..
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 233332 224444444 34457888864 56799999999999999999
Q ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcc--ccccCCeEEEEeCCeEEEecChHHHH
Q 001528 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 737 ~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
+|+|++||||||+||+.++..+. +.++.+. .|+|+|+++|+++ ....+|+|++|++|++++.|+.+|+.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999986 5676654 4899999999974 35679999999999999999999875
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.5e-29 Score=236.65 Aligned_cols=183 Identities=23% Similarity=0.359 Sum_probs=153.4
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcC-----------eE
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g-----------~i 660 (1059)
..++|++..-+. .-.|.|+|++|.+||++-+.||||||||||++-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 567888877653 45899999999999999999999999999999999999875 79999887 59
Q ss_pred EEEccccccccc-CHHHHhccCCCCC------HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 001528 661 AYVSQTSWIQSG-SIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1059)
Q Consensus 661 ayv~Q~pwi~~~-TIreNIlfg~~~~------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 733 (1059)
+...|+||+|.- +|-+||+|..|.+ +.....+++..+|+..+.+.| .+||||||+||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHHH
Confidence 999999999975 9999999998853 234566888888888887766 5799999999999999
Q ss_pred hhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEEE
Q 001528 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL 791 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iivl 791 (1059)
+++.|+.++||||+|.||..-..+--+-++.+. ..|--+|+|||..+-.+.-.+|+-|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999988776444444443 3578899999999988854455444
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=2.7e-29 Score=329.07 Aligned_cols=197 Identities=24% Similarity=0.374 Sum_probs=160.1
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcC----------eEEEEccccccc-ccCHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWIQ-SGSIR 675 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g----------~iayv~Q~pwi~-~~TIr 675 (1059)
..+|+|+|+.|+|||+++|+||+||||||||++|.|.++|. +|+|.++| .++||+|++.++ +.|++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 99999987 389999997666 46999
Q ss_pred HHhccCCC-------CC-------HH---------HHHHHHHHcCC---------chHH--hcCCCCCCccccCCC-CCC
Q 001528 676 DNILYGKP-------MD-------KA---------RYDKAIKACAL---------DKDI--NNFDHGDLTEIGQRG-LNL 720 (1059)
Q Consensus 676 eNIlfg~~-------~~-------~~---------~y~~vl~ac~L---------~~di--~~Lp~Gd~T~IGe~G-~~L 720 (1059)
||+.|+.. ++ ++ +++...+++.. +.-+ -.|.+-.+|.||++. ..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988521 11 11 11111222211 1112 235566789998754 579
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcc--ccccCCeEEEEeCCeE
Q 001528 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE--FLSEVDRILVLEGGQI 796 (1059)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I 796 (1059)
||||||||+||||+..+|++++|||||++||+.+...+. ++++... .|+|+|+++|+.. ....+|+|++|++|++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999987 5676653 4899999999973 4678999999999999
Q ss_pred EEecChHHHHH
Q 001528 797 TQSGNYQELLL 807 (1059)
Q Consensus 797 ~e~Gt~~eL~~ 807 (1059)
++.|+.+|+.+
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99999999873
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1e-28 Score=292.04 Aligned_cols=206 Identities=27% Similarity=0.427 Sum_probs=165.8
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccccccc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~~ 671 (1059)
.|.++|++++|+ +++.++|+|+++.+|+++++||++||||||||++|.|+.+|.+|+|...+ +++|++|++-..+
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478999999994 46899999999999999999999999999999999999999999999987 7999999999986
Q ss_pred c-CHHHHhccCCCC---CHHHHHHHHHH-------------------------cCCchHHhcCCCCC-CccccCCCCCCC
Q 001528 672 G-SIRDNILYGKPM---DKARYDKAIKA-------------------------CALDKDINNFDHGD-LTEIGQRGLNLS 721 (1059)
Q Consensus 672 ~-TIreNIlfg~~~---~~~~y~~vl~a-------------------------c~L~~di~~Lp~Gd-~T~IGe~G~~LS 721 (1059)
. |++|.+.-|... -..+|+++... .....-+..|.-.. ++. -.+||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~----~~~LS 155 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRP----VSSLS 155 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCc----hhhcC
Confidence 5 999999877541 11222222110 11112222222111 333 35799
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeE-EEe
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI-TQS 799 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I-~e~ 799 (1059)
||||-|++||||+..+||||||||||..||.++-..+ ++.+. ..+| |+|+|||.-+||.+ |++|+-+++|++ ...
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 9999999999999999999999999999999999886 45554 4567 99999999999987 799999999986 578
Q ss_pred cChHHHHHcC
Q 001528 800 GNYQELLLAG 809 (1059)
Q Consensus 800 Gt~~eL~~~~ 809 (1059)
|.|+..++.+
T Consensus 233 Gny~~~~~~r 242 (530)
T COG0488 233 GNYSSYLEQK 242 (530)
T ss_pred CCHHHHHHHH
Confidence 9999887654
No 354
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.3e-29 Score=252.30 Aligned_cols=186 Identities=29% Similarity=0.402 Sum_probs=155.8
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEcccccc---ccc
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI---QSG 672 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi---~~~ 672 (1059)
++++|+++|++|++|+++.|+|.+|||||||+++|.|...|++|+|.++| .++=|.|+|-- -+-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46899999999999999999999999999999999999999999999998 38889999974 467
Q ss_pred CHHHHhccCCC------CCH---HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEE
Q 001528 673 SIRDNILYGKP------MDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1059)
Q Consensus 673 TIreNIlfg~~------~~~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1059)
||.||+..... +.. +++++ .-.+-++.+|.|.+-..+.+-.-|||||||=++|+-|..+.|+|++|
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~-----~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRS-----SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHH-----HHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 99999985321 211 11111 12345778899999888888889999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc-cccCCeEEEEeCCeEEEe
Q 001528 744 DDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 744 Ddp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~ 799 (1059)
||=|+||||.++..+++..-+-.- .+-|.++|||+++- +..-+|.|+|++|+|+..
T Consensus 173 DEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 173 DEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred cchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999999999988754322122 35699999999976 788899999999999864
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.4e-28 Score=241.45 Aligned_cols=189 Identities=23% Similarity=0.360 Sum_probs=157.4
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEccccc-ccc----
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW-IQS---- 671 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pw-i~~---- 671 (1059)
..+.+.+||+.++|+..||+|.+|||||||.+.|.|..+|++|+|.++| .|-.+.|+|- -||
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 3578999999999999999999999999999999999999999999998 4889999884 222
Q ss_pred ------cCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 672 ------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 672 ------~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
+.+|-|=-...+...+++.+.++..+|.+|-..+ .-..||-|||||||||||+.-+|+|+|-||
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 2222232222233356788889999998876543 246799999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHH--hcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHcC
Q 001528 746 PFSAVDAHTAATLFNECVMA--ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~--~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~ 809 (1059)
++.+||+.+..++.+ ...+ ...|-.-|.|+.++-.+++ +|+|+||++|+++|.|+.+|+++..
T Consensus 176 Al~~LD~smrsQl~N-L~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 176 ALASLDMSMRSQLIN-LMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhhccHHHHHHHHH-HHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 999999999999874 3322 2358899999999999987 7999999999999999999998754
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=7.3e-29 Score=300.86 Aligned_cols=179 Identities=24% Similarity=0.361 Sum_probs=150.2
Q ss_pred eeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEE-----------EcC---------
Q 001528 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1059)
Q Consensus 599 ~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~-----------v~g--------- 658 (1059)
+++++|.+ ...+|++++ .+++||.++|+||+|||||||+++|.|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 47888864 246999999 8999999999999999999999999999999999996 554
Q ss_pred ------e----EEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHH
Q 001528 659 ------S----IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1059)
Q Consensus 659 ------~----iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 728 (1059)
. +.|++|.|.++.+|++||+.+.. ..++..++++..+|.+..+ ..-.+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-----------RDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 1 34556678888999999997531 3467788888888765432 23357999999999
Q ss_pred HHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCC
Q 001528 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1059)
Q Consensus 729 aLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G 794 (1059)
+||||+.++|++||||||||+||++...++. +.+..+.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~-~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVA-RLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999876 567665559999999999999865 8999999874
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=6.2e-28 Score=293.26 Aligned_cols=207 Identities=27% Similarity=0.426 Sum_probs=176.5
Q ss_pred CcEEEEeeeEeeCCC--CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC---CccEEEEcC---------
Q 001528 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~--~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~---~~G~I~v~g--------- 658 (1059)
..++++|.+.+-+.. ..+.+|+|||.++++||+.||.|||||||||||++|.|-.+. .+|+|.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457788888776543 246899999999999999999999999999999999999974 799999999
Q ss_pred -eEEEEccccccc-ccCHHHHhccCCC------CC----HHHHHHHHHHcCCchHHhcCCCCCCccccCC-CCCCChHHH
Q 001528 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1059)
Q Consensus 659 -~iayv~Q~pwi~-~~TIreNIlfg~~------~~----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQk 725 (1059)
..|||+|+..++ +-||||++.|... .+ +++++++++.-+|. + =.||.||.. +..+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~------~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-K------CADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-h------hccceecCCCCCccccchh
Confidence 399999998866 5699999987532 22 46778888777776 3 357888853 358999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCCEEEEEcCCccc--cccCCeEEEEeCCeEEEecCh
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~-~l~~kTvIlVTH~l~~--l~~aD~Iivl~~G~I~e~Gt~ 802 (1059)
.|+++|--+..||+|++||||||+||++++.++.+ .+++ ..+|||||+.=||++. .+..|++++|.+|+++..|+.
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99999999999999999999999999999999874 5655 4579999999999975 688999999999999999999
Q ss_pred HHHHH
Q 001528 803 QELLL 807 (1059)
Q Consensus 803 ~eL~~ 807 (1059)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 98764
No 358
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-28 Score=252.61 Aligned_cols=195 Identities=23% Similarity=0.404 Sum_probs=158.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
+.-|+++|+++.|. ++++|+|||.+|++||.-+|+|++||||||||+.+.|+++|++|.+.+-|
T Consensus 29 ~~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 29 EPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred cceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 34699999999996 36899999999999999999999999999999999999999999998765
Q ss_pred -eEEEEccc---ccccccCHHHHhccC---------CCCCHHHHHH---HHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 -SIAYVSQT---SWIQSGSIRDNILYG---------KPMDKARYDK---AIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 -~iayv~Q~---pwi~~~TIreNIlfg---------~~~~~~~y~~---vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
+||||+-+ -..-+.++||-|+=| .+++++++.+ .++.+++.+ + .+..=..||-
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-l----------a~r~~~~LS~ 174 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-L----------ADRPFGSLSQ 174 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-h----------ccCchhhcCH
Confidence 48999753 233367888888732 2456665554 455555543 2 2233467999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCCEEEEEcCCcccccc-CCeEEEEeCCeEEE
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL---EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l---~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 798 (1059)
|||||+-||||+..+|.++|||||+++||.+....+.+ .+.+.. .+.|+|+|||+.+.++. +++++.+++|+++.
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999998876654 454433 37899999999988655 69999999999999
Q ss_pred ecC
Q 001528 799 SGN 801 (1059)
Q Consensus 799 ~Gt 801 (1059)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 359
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.8e-27 Score=256.60 Aligned_cols=179 Identities=22% Similarity=0.303 Sum_probs=122.0
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHH-HHHhC--------------------CCCCCccEEEEcC-eEEEEccc
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl-~~llG--------------------e~~~~~G~I~v~g-~iayv~Q~ 666 (1059)
+.++|+|+||+|++||.++|+|+||||||||+ ..+.+ .+.|..++ +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 45799999999999999999999999999996 33221 01111111 112 13333333
Q ss_pred cc-ccc--cC---HHHHhcc-CCCC---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc
Q 001528 667 SW-IQS--GS---IRDNILY-GKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1059)
Q Consensus 667 pw-i~~--~T---IreNIlf-g~~~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1059)
+. ..+ .+ +.+...+ ..-+ +.++..+.++.++|.+. ....+..+||||||||++||||+++
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHHHh
Confidence 32 111 12 2121111 1001 11111344444444321 1345667899999999999999999
Q ss_pred CC--CEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccCCeEEEE------eCCeEEEec
Q 001528 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1059)
Q Consensus 737 ~~--~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~aD~Iivl------~~G~I~e~G 800 (1059)
+| +++||||||++||+++.+.+.+ .+... .+|+|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999998764 55543 3689999999999999999999999 999999987
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=3.5e-27 Score=291.07 Aligned_cols=205 Identities=23% Similarity=0.321 Sum_probs=147.3
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccccccc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~ 672 (1059)
..|+++|++++|+. .++|+|+||+|++|++++|||++|||||||+++|.|+. ..| +--+|+|+|++|++--.+-
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~--~~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA--IDG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCC-CCCCCEEEEEeccCCCCCC
Confidence 45999999999963 46999999999999999999999999999999999974 113 2224678888887543333
Q ss_pred CHHHHhccC-------------------------------------CCCCH--HHHHHHHHHcCCch----------HHh
Q 001528 673 SIRDNILYG-------------------------------------KPMDK--ARYDKAIKACALDK----------DIN 703 (1059)
Q Consensus 673 TIreNIlfg-------------------------------------~~~~~--~~y~~vl~ac~L~~----------di~ 703 (1059)
|+.|.++-. .+.++ +++.++.+..++.+ -+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 443322100 01111 23333333222210 011
Q ss_pred cCCCCCCc-cccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc
Q 001528 704 NFDHGDLT-EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1059)
Q Consensus 704 ~Lp~Gd~T-~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l 782 (1059)
.+ |... .....-.+||||||||++||||+..+|+++||||||++||++....+. +.++.. ++|+|+|||+.+++
T Consensus 330 ~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~~tviivsHd~~~l 404 (718)
T PLN03073 330 GL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE-TYLLKW--PKTFIVVSHAREFL 404 (718)
T ss_pred HC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHc--CCEEEEEECCHHHH
Confidence 11 1100 011223579999999999999999999999999999999999998875 556554 78999999999998
Q ss_pred cc-CCeEEEEeCCeEE-EecChHHHHHc
Q 001528 783 SE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1059)
Q Consensus 783 ~~-aD~Iivl~~G~I~-e~Gt~~eL~~~ 808 (1059)
.. ||+|++|++|++. ..|+|++..+.
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 432 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTFERT 432 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 76 8999999999996 68999876653
No 361
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=245.23 Aligned_cols=205 Identities=23% Similarity=0.422 Sum_probs=173.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------eEEEEc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g---------~iayv~ 664 (1059)
.+++++++.+|.+ ..+++||||++++|+..+++|++|+||||.++.|||+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999963 5799999999999999999999999999999999999999999999999 799999
Q ss_pred cccccc-ccCHHHHhccCCC---CCHHHHHHHHHHcCCchHHhcCCC-CCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 665 QTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDH-GDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 665 Q~pwi~-~~TIreNIlfg~~---~~~~~y~~vl~ac~L~~di~~Lp~-Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
.+--|+ +.|+.|-+.|-.. +..++.++-++ .+++.+.- |.. ..+-..||-|-.|.|.+--|+..+|+
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~-----~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQ-----AWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHH-----HHHHhccccccc---cchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 998886 5799999987432 55555544433 35555542 222 24566899999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHcCc
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~~~ 810 (1059)
++|||||||+||+-..+.+ ++.+..+ -+|+|+|+.||+++.+.. ||+++.|++|+.|-.|+-++..++.|
T Consensus 151 LlILDEPFSGLDPVN~elL-k~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 151 LLILDEPFSGLDPVNVELL-KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EEEecCCccCCChhhHHHH-HHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 9999999999999988754 5666554 489999999999998865 99999999999999999999886543
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=5.9e-28 Score=239.75 Aligned_cols=123 Identities=38% Similarity=0.622 Sum_probs=113.7
Q ss_pred ccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEcccccccccC-HHHHh
Q 001528 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGS-IRDNI 678 (1059)
Q Consensus 613 L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi~~~T-IreNI 678 (1059)
|+|+|++|++|++++|+|++|||||||+++|.|.++|.+|+|.++| .++|++|++.++++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999987 499999999999875 9999
Q ss_pred ccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCc
Q 001528 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1059)
Q Consensus 679 lfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~S 748 (1059)
.++++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678999999988765 45678888899999999999999999999999999999996
No 363
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=7.8e-27 Score=254.41 Aligned_cols=211 Identities=23% Similarity=0.448 Sum_probs=171.1
Q ss_pred CcEEEEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-----CccEEEEcC--------
Q 001528 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-----~~G~I~v~g-------- 658 (1059)
.-++++|.+.++... ....++++|||+|++||.+|+||.||||||--..+++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 347888888877532 346789999999999999999999999999999999999986 468998877
Q ss_pred ---------eEEEEcccccc-cc--cCHHH----HhccCCCC----CHHHHHHHHHHcCCch---HHhcCCCCCCccccC
Q 001528 659 ---------SIAYVSQTSWI-QS--GSIRD----NILYGKPM----DKARYDKAIKACALDK---DINNFDHGDLTEIGQ 715 (1059)
Q Consensus 659 ---------~iayv~Q~pwi-~~--~TIre----NIlfg~~~----~~~~y~~vl~ac~L~~---di~~Lp~Gd~T~IGe 715 (1059)
+|+.+.|+|-- .| -||-. -|...+.. .++|..+.++..++.+ -++..|
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------- 155 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------- 155 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------
Confidence 59999999963 23 24444 44443333 3567777888888754 344444
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccccc-CCeEEEEe
Q 001528 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
..|||||||||-||-|+..+||++|-||||.|||..+..+|. +.++++ -.|-.+++|||++..+++ ||+|.||.
T Consensus 156 --HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL-~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 156 --HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL-DLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred --cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHH-HHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe
Confidence 579999999999999999999999999999999999999987 456554 258899999999999865 89999999
Q ss_pred CCeEEEecChHHHHHcC-chHHHH
Q 001528 793 GGQITQSGNYQELLLAG-TAFEQL 815 (1059)
Q Consensus 793 ~G~I~e~Gt~~eL~~~~-~~~~~l 815 (1059)
+|+|+|.|+-+++.+.. ..|.+.
T Consensus 233 ~G~ivE~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 233 HGEIVETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred ccEEeecCcHHHHhhCCCChHHHH
Confidence 99999999999998764 456543
No 364
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=8.5e-27 Score=254.00 Aligned_cols=181 Identities=24% Similarity=0.409 Sum_probs=134.3
Q ss_pred CcccceeeeecCCcEEEEEccCCCChhHHHHHHh--------CCC--CCCccE-----------EEEcC-----------
Q 001528 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGT-----------VNLYG----------- 658 (1059)
Q Consensus 611 ~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~ll--------Ge~--~~~~G~-----------I~v~g----------- 658 (1059)
..|+|+|++||.|.+++|+|.||||||||++.++ +.. .|..++ |.++.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 111 122221 22221
Q ss_pred ----------------------------eEEEEccccc-ccccCHHHHhccCCCC-CHHHHHHHHHHcCCchHHhcCCCC
Q 001528 659 ----------------------------SIAYVSQTSW-IQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHG 708 (1059)
Q Consensus 659 ----------------------------~iayv~Q~pw-i~~~TIreNIlfg~~~-~~~~y~~vl~ac~L~~di~~Lp~G 708 (1059)
.+.|..++.. +.+.|+.||+.|-..+ +.++..++++.++|...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh-------
Confidence 1344444432 4456777776554332 22334444444444321
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHhhcC---CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc
Q 001528 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE 784 (1059)
Q Consensus 709 d~T~IGe~G~~LSGGQkQRIaLARAly~~---~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~ 784 (1059)
..+.+..+||||||||++||||+.++ |++|||||||++||++..+.+. +.+..+. +|.|+|+|||+++.+..
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 24677889999999999999999996 7999999999999999999876 4666544 58999999999999999
Q ss_pred CCeEEEE------eCCeEEEecCh
Q 001528 785 VDRILVL------EGGQITQSGNY 802 (1059)
Q Consensus 785 aD~Iivl------~~G~I~e~Gt~ 802 (1059)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=9.6e-26 Score=266.78 Aligned_cols=202 Identities=26% Similarity=0.423 Sum_probs=172.5
Q ss_pred CCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEcccc-
Q 001528 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1059)
Q Consensus 591 ~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~p- 667 (1059)
....++++|++++|+++ +++++++||.|++|+++||+||+|+|||||++.|+|...|.+|+|.+.- ++||.+|+-
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 34568999999999753 6899999999999999999999999999999999999999999998865 599999986
Q ss_pred -cccccCHHHHhccCCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 668 -wi~~~TIreNIlfg~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
+.-+.|+-|++.=+.| ..+..++..+...++..+-.. .+-..||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3355699999976664 348889999999988776442 3456899999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEe-cChHHHHHc
Q 001528 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS-GNYQELLLA 808 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~-Gt~~eL~~~ 808 (1059)
||..||.++-..+ ++++... .-|+|+|||..+++.. |++|+.+++ ++.+. |+|+|..+.
T Consensus 466 PTNhLDi~s~~aL-e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEAL-EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999998765 5666443 3499999999999977 799999998 77665 999987754
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=231.24 Aligned_cols=199 Identities=23% Similarity=0.373 Sum_probs=172.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
.++++|++.+++. -.+|+|+||++.+||+-+|+||+|+||||++.+|.|-.+|++|+|..+|
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 5788999999964 4699999999999999999999999999999999999999999999998
Q ss_pred eEEEEcccccccc-cCHHHHhccCC-------------C--CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 SIAYVSQTSWIQS-GSIRDNILYGK-------------P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 ~iayv~Q~pwi~~-~TIreNIlfg~-------------~--~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.|+-=.|.|-+|. -||+||+-... - -+++++++++...+|.+--. .--.+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 2788899999986 59999986431 1 13458899998888865322 22468999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCccc-CHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEec
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAl-D~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~G 800 (1059)
|||||+-|+--+.++|++++||||.+++ |++|++. .+.++.+.+++++++|-|.+.|++. ||+|-||+.|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t--aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH--HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 9999999999999999999999999999 7888774 4677788889999999999999865 8999999999999999
Q ss_pred ChHHHHHc
Q 001528 801 NYQELLLA 808 (1059)
Q Consensus 801 t~~eL~~~ 808 (1059)
+.+|+.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99997643
No 367
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=1.6e-22 Score=226.47 Aligned_cols=450 Identities=16% Similarity=0.180 Sum_probs=263.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHH---HHHHHHHHHHHhhHHHHHH-HHHHHH
Q 001528 327 TKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEI---VNYIAVDAYRMGEFPFWFH-LTWSLA 402 (1059)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~i---vnl~s~D~~~i~~~~~~~~-~~~~~~ 402 (1059)
.++-.++.+..-.+...+++...|+.|+.-.|++-+.-....+-...-|.+ =|.++.|+..+.+.+..+. .+---.
T Consensus 166 iaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~ 245 (728)
T KOG0064|consen 166 IAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPV 245 (728)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHH
Confidence 334444555555566678899999999999998876533211111122222 2468899988877554332 232333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 001528 403 LQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKIL----QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1059)
Q Consensus 403 l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~~~~~----~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f 478 (1059)
+.++++.+.|....+-..-.|...+.+.+.+...+-|.. .+.-.+....+..--.+=+.+++|-..|-+|+-.+.=
T Consensus 246 lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE 325 (728)
T KOG0064|consen 246 LDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVE 325 (728)
T ss_pred HHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHH
Confidence 566666555544332111111111111111111122221 1111111111111223447788899999999875544
Q ss_pred HHHHHHHHHHHHHH---HHHHH-HHHHHHHH---HHHHHHHH--HHHHHHHHHHHhcCCC-------CCHHHHHH-HHHH
Q 001528 479 KSLIESRREKEFKW---LSEAQ-LRKAYGTV---IYWMSPTI--ISSVIFLGCALTGSAP-------LNASTIFT-VLAT 541 (1059)
Q Consensus 479 ~~~i~~~R~~El~~---l~~~~-~~~~~~~~---~~~~~~~~--v~~~~f~~~~l~~~~~-------lt~~~~f~-~l~l 541 (1059)
.+++++.-+.-... ..+.+ .....-.+ ..|.+.-+ +++-++... ...++. .+-...|+ .=.+
T Consensus 326 ~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t-~~s~~~~~~~e~~~srt~~f~t~r~L 404 (728)
T KOG0064|consen 326 LTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTST-LASEGTLQLSEEGNSRTKEFITNRRL 404 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecc-cCCCCcccccccchhHHHHHHHHHHH
Confidence 44443332221111 11110 00000000 01111100 000001100 011111 11122232 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----------CCCchh-------hhcccc-----CCCCcEEE
Q 001528 542 LRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HE-----------LNNDDV-------RRISLQ-----KSDRSVKI 597 (1059)
Q Consensus 542 ~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~-~e-----------~~~~~~-------~~~~~~-----~~~~~i~~ 597 (1059)
+......+..+......+.|-..--.|+.+.++. ++ .++.+. +..+.+ .....|.+
T Consensus 405 L~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~l 484 (728)
T KOG0064|consen 405 LLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIIL 484 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEE
Confidence 3334456666777777777777777888754321 00 000000 000000 01235788
Q ss_pred EeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc--CeEEEEcccccccccCHH
Q 001528 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSWIQSGSIR 675 (1059)
Q Consensus 598 ~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~--g~iayv~Q~pwi~~~TIr 675 (1059)
+|+-.--|.. ..+..++||+|++|.-..|.||+|||||||.+.|-|..|...|..... .++-|.||.|+.=-||+|
T Consensus 485 enIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlR 562 (728)
T KOG0064|consen 485 ENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLR 562 (728)
T ss_pred ecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCccc
Confidence 8887765542 457889999999999999999999999999999999999999988775 479999999999999999
Q ss_pred HHhccCC--------CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCC
Q 001528 676 DNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1059)
Q Consensus 676 eNIlfg~--------~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~ 747 (1059)
|-|.+-. .+.+++..+.++...|+.-++ -..|.+.. -+----||||+|||++.||..|.+|.--+|||+|
T Consensus 563 DQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 563 DQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 9999753 367888999999998875443 34444432 2333459999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc
Q 001528 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1059)
Q Consensus 748 SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~ 784 (1059)
|||-.++|..||+. .++ .|-+.|-||||++..+.
T Consensus 641 sAvsidvE~~i~~~-ak~--~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQA-AKD--AGISLLSITHRPSLWKY 674 (728)
T ss_pred cccccchHHHHHHH-HHh--cCceEEEeecCccHHHH
Confidence 99999999999964 333 47799999999987543
No 368
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-24 Score=223.13 Aligned_cols=201 Identities=25% Similarity=0.357 Sum_probs=166.7
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC--CCCCccEEEEcCe------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYGS------------ 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe--~~~~~G~I~v~g~------------ 659 (1059)
-++++|++.+-+.+ +.+|+++||+|++||..||.||+|||||||.++|+|. |++++|+|..+|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36788888877532 4799999999999999999999999999999999997 6899999999983
Q ss_pred --EEEEccccccccc-CHHHHhccCC-------C---CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 660 --IAYVSQTSWIQSG-SIRDNILYGK-------P---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 660 --iayv~Q~pwi~~~-TIreNIlfg~-------~---~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
|....|.|-=+.| |+++=+.-+. + -..++.+++++..++++++.. ..| +..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHH
Confidence 8899999987776 7777664221 1 124667778888888874431 112 3458999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccC--CeEEEEeCCeEEEecChH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~a--D~Iivl~~G~I~e~Gt~~ 803 (1059)
|.-|+-++.-+|++.|||||=|+||...-+.| .+.++.+. +|+++++|||.-..+... |++.||-+|+|+.+|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V-~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIV-AEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHH-HHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999988765 56776654 689999999999988876 99999999999999998
Q ss_pred HHHH
Q 001528 804 ELLL 807 (1059)
Q Consensus 804 eL~~ 807 (1059)
||..
T Consensus 230 el~~ 233 (251)
T COG0396 230 ELAE 233 (251)
T ss_pred HHHH
Confidence 7764
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=2.6e-25 Score=234.30 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=123.6
Q ss_pred cceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCcc---------EEEEc----------CeEEEEcccccccccCH
Q 001528 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1059)
Q Consensus 614 ~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G---------~I~v~----------g~iayv~Q~pwi~~~TI 674 (1059)
+++++++++| +++|+||+|||||||+++|.|.+++..| ++... .+|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999998866533 34333 2689999999988
Q ss_pred HHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh----cCCCEEEEcCCCccc
Q 001528 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1059)
Q Consensus 675 reNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly----~~~~IllLDdp~SAl 750 (1059)
|+.. .+++.+++++. ++-. ..+...||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3321 24566666655 1111 2345679999999999999985 677999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEe
Q 001528 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~ 792 (1059)
|++....+. +.+....++.|+|+|||+++.+..||+++.|.
T Consensus 149 D~~~~~~l~-~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFA-RLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHH-HHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 999999876 56777667899999999999999999999984
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.7e-25 Score=231.36 Aligned_cols=192 Identities=25% Similarity=0.358 Sum_probs=148.8
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe------------EEEE----ccccccccc
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYV----SQTSWIQSG 672 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------iayv----~Q~pwi~~~ 672 (1059)
..++.+||||+||+|+.++++|++|+||||+|+.|.|...|++|.|.|+|. ++|| .|--|-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 3333 22233332
Q ss_pred CHHHHhccCC---CCCH----HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 673 TIreNIlfg~---~~~~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
+.|-+..-+ +..+ ++...-.+.-+|++++ -..-..||=|||-|.-||-|++++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l-----------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL-----------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh-----------hhhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 333322111 1223 3334444444444433 34567899999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccc-ccCCeEEEEeCCeEEEecChHHHHHcCchHHH
Q 001528 746 PFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l-~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~ 814 (1059)
||=+||..+...|- +.++.. .++.||++.||.++-+ .-||+|+++++|+++..|+.++|.++-+.+.+
T Consensus 183 pTvgLDV~aq~~ir-~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~ 253 (325)
T COG4586 183 PTVGLDVNAQANIR-EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKE 253 (325)
T ss_pred CccCcchhHHHHHH-HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceE
Confidence 99999999998874 566543 4789999999999876 55999999999999999999999887655443
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6e-25 Score=218.87 Aligned_cols=173 Identities=23% Similarity=0.348 Sum_probs=143.5
Q ss_pred EEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe------------EEEEc
Q 001528 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVS 664 (1059)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~------------iayv~ 664 (1059)
.+|.+..-+ +...+.++||++.+||.+-|.||+||||||||+.|.|.++|.+|+|.++|. .-|..
T Consensus 5 a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 5 AENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 345554432 457999999999999999999999999999999999999999999999862 45666
Q ss_pred cccccc-ccCHHHHhccCCC----CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCC
Q 001528 665 QTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1059)
Q Consensus 665 Q~pwi~-~~TIreNIlfg~~----~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1059)
.+|-|= .-|+.||+.|-++ -+++.++++++..+|.. ++.+|- .+||-|||.||||||-..+.+|
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~----------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPV----------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccch----------hhcchhHHHHHHHHHHHcCCCC
Confidence 666664 4599999998765 35789999999999974 555553 5799999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHH-hcCCCEEEEEcCCcccccc
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSE 784 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~-~l~~kTvIlVTH~l~~l~~ 784 (1059)
+.|||||++|+|.+.... +.+.+.. .-+|-.||+.||+.--+..
T Consensus 151 LWiLDEP~taLDk~g~a~-l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 151 LWILDEPFTALDKEGVAL-LTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred ceeecCcccccCHHHHHH-HHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999998775 5666643 4578899999999866543
No 372
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=210.02 Aligned_cols=214 Identities=26% Similarity=0.409 Sum_probs=163.8
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC---------------
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------- 658 (1059)
-+++++.+..|.+. ..-+|+||++-|||..+|||.|||||||||++|.+-+.|++|+|..+-
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46788999999764 467999999999999999999999999999999999999999998742
Q ss_pred -------eEEEEccccc--c-cccCHHHHhccCCC-C--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHH
Q 001528 659 -------SIAYVSQTSW--I-QSGSIRDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1059)
Q Consensus 659 -------~iayv~Q~pw--i-~~~TIreNIlfg~~-~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 725 (1059)
.-++|-|+|- + ..-|--.|| |+. + -...|-+. ++.+ .++++... =+.+.|.+....+|||.+
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~RHYG~i-R~~a-~~WL~~VE-I~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGARHYGNI-RAEA-QDWLEEVE-IDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhhhhhhH-HHHH-HHHHHhcc-cCcccccCcccccchHHH
Confidence 2799999995 1 111222233 110 1 11122221 1111 23333322 245677788899999999
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCCccccc-cCCeEEEEeCCeEEEecCh
Q 001528 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 726 QRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~-~aD~Iivl~~G~I~e~Gt~ 802 (1059)
||+.|||-+...|.++.+||||-+||..+..++. ++++++. -+-.+|+|||.+...+ -+|+..||++|+++|+|--
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLL-DllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHH-HHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 9999999999999999999999999999999987 5777764 3679999999999865 4899999999999999987
Q ss_pred HHHHHc-CchHHHHH
Q 001528 803 QELLLA-GTAFEQLV 816 (1059)
Q Consensus 803 ~eL~~~-~~~~~~l~ 816 (1059)
+..+.. ...|.+++
T Consensus 237 DrvLDDP~hPYTQLL 251 (258)
T COG4107 237 DRVLDDPHHPYTQLL 251 (258)
T ss_pred cccccCCCCchHHHH
Confidence 777754 34566654
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=5.8e-24 Score=232.34 Aligned_cols=177 Identities=21% Similarity=0.263 Sum_probs=124.9
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCC----------------CCccEEEEcCeEEEEccccccc---
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----------------KISGTVNLYGSIAYVSQTSWIQ--- 670 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~----------------~~~G~I~v~g~iayv~Q~pwi~--- 670 (1059)
..++.+++ |++++|+||+|||||||+++|.+.+. +.+|.....+.|.++.|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34677766 88999999999999999999985432 2233111112234444443110
Q ss_pred ---ccCHH-------HHhcc-CCCCCHHHHHHHHHHcCCchHH--hcCCCCCCcc-------ccCCCCCCChHHHHHHHH
Q 001528 671 ---SGSIR-------DNILY-GKPMDKARYDKAIKACALDKDI--NNFDHGDLTE-------IGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 671 ---~~TIr-------eNIlf-g~~~~~~~y~~vl~ac~L~~di--~~Lp~Gd~T~-------IGe~G~~LSGGQkQRIaL 730 (1059)
+-+++ +|+.+ ++..+.+++...++.+++.++- ..+|.|..++ .++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 01122 33322 2245778888888888776531 1234554333 357889999999999999
Q ss_pred HHHhh----cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEe
Q 001528 731 ARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1059)
Q Consensus 731 ARAly----~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~ 792 (1059)
|||++ ++|++++|||||++||+++.+.+. +.+..+.+++|+|++||+.+....||+|++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99996 468999999999999999999876 46666667889999999988889999999994
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=1.1e-23 Score=225.29 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=131.0
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeec-CCcEEEEEccCCCChhHHHHHHhC-CCCCCccEEEE------------cCe
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNL------------YGS 659 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~-~G~~vaIvG~sGsGKSTLl~~llG-e~~~~~G~I~v------------~g~ 659 (1059)
.|+++|.. +|... .+++|+.. +|+.++|+||+|||||||+++|.+ .+.+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 47788777 65432 56777654 599999999999999999999995 33444443332 125
Q ss_pred EEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCC-CCccccCCCCCCChHHHHHHHHHHHhhc--
Q 001528 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG-DLTEIGQRGLNLSGGQKQRIQLARAVYN-- 736 (1059)
Q Consensus 660 iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~G-d~T~IGe~G~~LSGGQkQRIaLARAly~-- 736 (1059)
|+++.|++.-.- .++.+. ..+.+.+.+.+. ++.| .++.+..++.+||||||||++||||+..
T Consensus 78 v~~~f~~~~~~~----~~~r~~-gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGGKKY----RVERSR-GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECCeEE----EEEEec-CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 888888874322 233222 344444443321 2233 3455567788999999999999999974
Q ss_pred --------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CCEEEEEcCCcccccc-CCeEEEEeCCeE
Q 001528 737 --------DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1059)
Q Consensus 737 --------~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I 796 (1059)
+|++++|||||++||+.+.+.+. +.+....+ ++|+|+|||+.+.+.. +|+|++|++|..
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 67999999999999999999864 56766544 8899999999998765 699999999864
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=4.4e-23 Score=218.72 Aligned_cols=153 Identities=21% Similarity=0.313 Sum_probs=123.4
Q ss_pred eeeeecCCcEEEEEccCCCChhHHHHHH----hCCCCCCccEEEE----------cCeEEEEcccc-----cccc-cCHH
Q 001528 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNL----------YGSIAYVSQTS-----WIQS-GSIR 675 (1059)
Q Consensus 616 inl~i~~G~~vaIvG~sGsGKSTLl~~l----lGe~~~~~G~I~v----------~g~iayv~Q~p-----wi~~-~TIr 675 (1059)
.++++.+| +++|+||+|||||||+.+| .|..++..|.+.. ...|+++.|++ -+.. -|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44667777 9999999999999999999 4999998876531 12699999998 3322 3999
Q ss_pred HHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH------HHHHHHhhcCCCEEEEcCCCcc
Q 001528 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 676 eNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR------IaLARAly~~~~IllLDdp~SA 749 (1059)
||+.++. +++.++.+ .+...+|||||||| ++||||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998863 33333333 45677999999996 7999999999999999999999
Q ss_pred cCHHHHH-HHHHHHHHHhcC--CCEEEEEcCCccccccCCeEEEEeC
Q 001528 750 VDAHTAA-TLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 750 lD~~t~~-~i~~~~i~~~l~--~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
||++... .+. +.+....+ ++|+|++||+.+.+..||+|++|++
T Consensus 152 LD~~~~~~~l~-~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLA-EIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHH-HHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999988 765 45655544 7899999999999999999999954
No 376
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=6.3e-23 Score=256.69 Aligned_cols=97 Identities=27% Similarity=0.552 Sum_probs=88.1
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCC---CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRI 788 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~---~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~I 788 (1059)
.+.+..+||||||||++||||+.++| ++|||||||++||.+....+. +.+..+. +|+|+|+|||+++.+..||+|
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 57788899999999999999999999 999999999999999999876 5676653 689999999999999999999
Q ss_pred EEE------eCCeEEEecChHHHHHcCc
Q 001528 789 LVL------EGGQITQSGNYQELLLAGT 810 (1059)
Q Consensus 789 ivl------~~G~I~e~Gt~~eL~~~~~ 810 (1059)
++| ++|+|++.|+++|+.+...
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 999 7999999999999987653
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.2e-23 Score=201.88 Aligned_cols=187 Identities=25% Similarity=0.415 Sum_probs=140.7
Q ss_pred EEEEeeeEeeCC--C--CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc--C----------
Q 001528 595 VKIQEGNFSWDP--E--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1059)
Q Consensus 595 i~~~~~sf~~~~--~--~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~--g---------- 658 (1059)
+.++|++.++.- . -.-|+++|+||+++.||++++-|||||||||||+.|-|-|.|++|+|.+. |
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 556666544431 1 12479999999999999999999999999999999999999999999874 2
Q ss_pred ---------eEEEEcccccc-cccC----HHHH-hccCCCCC--HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCC
Q 001528 659 ---------SIAYVSQTSWI-QSGS----IRDN-ILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1059)
Q Consensus 659 ---------~iayv~Q~pwi-~~~T----IreN-Ilfg~~~~--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LS 721 (1059)
.|+||+|---. -.-+ +.|- +.-|-+-+ .++-...+..-.+-+-+=.|| ..++|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 49999994321 1111 1121 12343332 234445556666666666666 46899
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccc-cCCeEEEEe
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLE 792 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~-~aD~Iivl~ 792 (1059)
||++|||.|||.+.-|-+|+||||||++||+...+.+. +.|.+. -+|...|=|=|+-+.-. -||+++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVv-eli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVV-ELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHH-HHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999988776 567654 47889999999877643 378888774
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=257.70 Aligned_cols=204 Identities=22% Similarity=0.328 Sum_probs=174.8
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------- 658 (1059)
..+..+|.+..|+.... +.+++++.|++||..++-|++||||||+++.+.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 56888999999976432 89999999999999999999999999999999999999999999976
Q ss_pred eEEEEccccccc-ccCHHHHhccC-----CCC-C-HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 001528 659 SIAYVSQTSWIQ-SGSIRDNILYG-----KPM-D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1059)
Q Consensus 659 ~iayv~Q~pwi~-~~TIreNIlfg-----~~~-~-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 730 (1059)
++|||||..-+. .-|.||.+.+- -+. | ++..++.+++.+|.+..... -.++|||||.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHH
Confidence 399999986665 46999999752 221 2 24467788888877655432 46899999999999
Q ss_pred HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChHHHHHc
Q 001528 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 731 ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~-~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
|-|+..+|++++||||++++|++..++++ +.+.+..+ +|.+|+.||.++.... |||+.+|.+|++..-|+.++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLW-DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999999998 57777665 4599999999998765 999999999999999999999865
Q ss_pred Cc
Q 001528 809 GT 810 (1059)
Q Consensus 809 ~~ 810 (1059)
-|
T Consensus 789 fG 790 (885)
T KOG0059|consen 789 YG 790 (885)
T ss_pred cC
Confidence 43
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=6.6e-23 Score=224.93 Aligned_cols=172 Identities=20% Similarity=0.248 Sum_probs=132.0
Q ss_pred CcEEEEEccCCCChhHHHHHHhCCCCCCc-cEEEEcC----------------eEEEEcccccc----------cccCHH
Q 001528 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYG----------------SIAYVSQTSWI----------QSGSIR 675 (1059)
Q Consensus 623 G~~vaIvG~sGsGKSTLl~~llGe~~~~~-G~I~v~g----------------~iayv~Q~pwi----------~~~TIr 675 (1059)
..+++||||+|||||||+.+|.+.+.+.. |++...| +|.++.|++-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 56999999999999999999999987753 4544321 68999998622 246888
Q ss_pred HHhccCCC---------CCHHHHHHHHHHcCCchH-H-hcCCCCCC-------ccccCCCCCCChHHHHHHHHHHHhh--
Q 001528 676 DNILYGKP---------MDKARYDKAIKACALDKD-I-NNFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1059)
Q Consensus 676 eNIlfg~~---------~~~~~y~~vl~ac~L~~d-i-~~Lp~Gd~-------T~IGe~G~~LSGGQkQRIaLARAly-- 735 (1059)
+||..+.. ...+++.+.++.+++..| . ..+++|.= .....+..+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866532 235788888999888622 0 01122211 1234567789999999999999997
Q ss_pred --cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEe--CCe
Q 001528 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE--GGQ 795 (1059)
Q Consensus 736 --~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~--~G~ 795 (1059)
++|++++|||||++||++..+++. +.+....+|.|+|+|||+.+.+..||+|+-+. ||.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 688999999999999999999876 46766667899999999999999999998874 554
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=5.1e-23 Score=232.64 Aligned_cols=199 Identities=23% Similarity=0.369 Sum_probs=169.4
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc--CeEEEEcccc--
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTS-- 667 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~--g~iayv~Q~p-- 667 (1059)
...|.+.|++|.|++++ .+++++||-|.+++.+|+|||+|+||||||+++.|+..|..|.|... ..+++-.|.-
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 34689999999998653 79999999999999999999999999999999999999999999754 3577777754
Q ss_pred -cccccCHHHHhc--cCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEc
Q 001528 668 -WIQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1059)
Q Consensus 668 -wi~~~TIreNIl--fg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1059)
--...|.-||+. |....+.+.++..+..|+|..|.+.-|- .+||+|||.||..||..+..|.|+|||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEec
Confidence 355778888885 5555678999999999999988877663 589999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEE-ecChHHH
Q 001528 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQEL 805 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e-~Gt~~eL 805 (1059)
|||++||.++-..+ .++|+.. .-++|+|||...++.+ |++|.+.+||++.. .|.|..-
T Consensus 535 EPtnhLDi~tid~l-aeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 535 EPTNHLDIETIDAL-AEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCCcCCCchhHHHH-HHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 99999999997764 5677654 3489999999999977 79999999998764 5666543
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=8.1e-23 Score=223.56 Aligned_cols=168 Identities=21% Similarity=0.264 Sum_probs=131.6
Q ss_pred cEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--------------------eEEEEcccc--cccccCHHHHhc--
Q 001528 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------------SIAYVSQTS--WIQSGSIRDNIL-- 679 (1059)
Q Consensus 624 ~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--------------------~iayv~Q~p--wi~~~TIreNIl-- 679 (1059)
.+++|+||+|||||||+.+|.+.+.+..|++...+ .+.|..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 39999999999999999999988876666553311 244444542 234444444421
Q ss_pred --cCCCCCHHHHHHHHHHcCCchHHhc--CCCCCCccccCCC---------CCCChHHHHHHHHHHHhhc----CCCEEE
Q 001528 680 --YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQRG---------LNLSGGQKQRIQLARAVYN----DADIYL 742 (1059)
Q Consensus 680 --fg~~~~~~~y~~vl~ac~L~~di~~--Lp~Gd~T~IGe~G---------~~LSGGQkQRIaLARAly~----~~~Ill 742 (1059)
-|++.++++|++.++.|++..|... .++|+-+.+.+.. .+||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1456788999999999999876443 4678878877654 7899999999999999975 499999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHHhcC-CCEEEEEcCCccccccCCeEEEEe
Q 001528 743 FDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLE 792 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~~l~-~kTvIlVTH~l~~l~~aD~Iivl~ 792 (1059)
|||||++||.+...++. +.+....+ |.|+|+|||+.+.+..||++++|.
T Consensus 183 lDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 183 LDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EecccccCCHHHHHHHH-HHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 99999999999999875 56766544 889999999999999999999984
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=2.5e-21 Score=251.28 Aligned_cols=96 Identities=26% Similarity=0.476 Sum_probs=85.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHhh---cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRI 788 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly---~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~I 788 (1059)
.+....+|||||||||+||||+. .+|++|||||||++||.+..+.++ +.+..+. +|+|+|+|||+++.++.||+|
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIiIsHdl~~i~~aDrV 881 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVIIEHNMHVVKVADYV 881 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 46778899999999999999998 599999999999999999999876 5666543 589999999999999999999
Q ss_pred EEEe------CCeEEEecChHHHHHcC
Q 001528 789 LVLE------GGQITQSGNYQELLLAG 809 (1059)
Q Consensus 789 ivl~------~G~I~e~Gt~~eL~~~~ 809 (1059)
++|+ +|+++..|+++++....
T Consensus 882 i~L~p~gg~~~G~iv~~Gtpeel~~~~ 908 (1809)
T PRK00635 882 LELGPEGGNLGGYLLASCSPEELIHLH 908 (1809)
T ss_pred EEEccCCCCCCCEEEEeCCHHHHHhcc
Confidence 9996 79999999999998643
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=4e-22 Score=212.51 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=130.3
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccccccc-C
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG-S 673 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~-T 673 (1059)
++++|.. +|. +..+++++++ ++++|+||+||||||++++|...+-...... ..++++|++|+....+. |
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 5566544 553 3468888887 8999999999999999999972211110111 12469999999876654 8
Q ss_pred HHHHhccCCCC-CHHHHH--HH-HH--H----cCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc----CCC
Q 001528 674 IRDNILYGKPM-DKARYD--KA-IK--A----CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DAD 739 (1059)
Q Consensus 674 IreNIlfg~~~-~~~~y~--~v-l~--a----c~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~----~~~ 739 (1059)
.++++.+-... +.+.++ .. .+ . .+-..++..||++.++.+ ..||||||||++||||++. +|+
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 88887654332 111000 00 00 0 011224556777777764 4799999999999999974 589
Q ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEe
Q 001528 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1059)
Q Consensus 740 IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~ 792 (1059)
+++|||||+++|++..+.+. +.+....++.|+|+|||+.+....||+|++|.
T Consensus 152 ililDEPt~gLD~~~~~~l~-~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVA-NYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHH-HHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 99999999999999998765 66777767889999999988888999999995
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=4.3e-21 Score=239.87 Aligned_cols=92 Identities=30% Similarity=0.592 Sum_probs=83.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhc---CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRI 788 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~---~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~I 788 (1059)
.+.+..+||||||||++||||+.+ +|++|||||||++||.+..+.+. +.+..+. +|+|+|++||+++.+..||+|
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 577888999999999999999997 59999999999999999999876 5666553 689999999999999999999
Q ss_pred EEE------eCCeEEEecChHHH
Q 001528 789 LVL------EGGQITQSGNYQEL 805 (1059)
Q Consensus 789 ivl------~~G~I~e~Gt~~eL 805 (1059)
++| ++|+|++.|+++|+
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999886
No 385
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=7.2e-21 Score=197.15 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=106.8
Q ss_pred eeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeE--EEEcccccccccCHHHHhccCCCCCHHHHHHHH
Q 001528 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI 693 (1059)
Q Consensus 616 inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~i--ayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl 693 (1059)
..+...++.+.+|+||+|||||+++.||.=-+--.+-....+... .+-...++-.+++|+ |.|.+
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f~~----------- 81 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITFDK----------- 81 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEEEC-----------
Confidence 333333344999999999999999999843221111110000000 111222222233332 23322
Q ss_pred HHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh----hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C
Q 001528 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E 768 (1059)
Q Consensus 694 ~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~ 768 (1059)
++..+|+|+.|+| ||||||||++||||+ +++|+++++|||++++|++..+.+. +.+.... +
T Consensus 82 -------~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~ 147 (178)
T cd03239 82 -------SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKH 147 (178)
T ss_pred -------ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC
Confidence 2789999999999 999999999999998 4799999999999999999999876 4565543 4
Q ss_pred CCEEEEEcCCccccccCCeEEEEeC
Q 001528 769 KKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 769 ~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
|+|+|++||+.+.+..+|+++.++.
T Consensus 148 g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 5899999999999999999999965
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.2e-21 Score=239.44 Aligned_cols=189 Identities=25% Similarity=0.385 Sum_probs=159.7
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcC----------eEEEEcccc-cccccCHH
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG----------SIAYVSQTS-WIQSGSIR 675 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g----------~iayv~Q~p-wi~~~TIr 675 (1059)
.+..|+||+=-++||.++|+.|+|||||||||+.|.|-- -..+|+|.++| ++|||.|++ ++-.-|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 456899999999999999999999999999999999863 34678999998 499999975 68888999
Q ss_pred HHhccCC----C--C-CH---HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC-CEEEEc
Q 001528 676 DNILYGK----P--M-DK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-DIYLFD 744 (1059)
Q Consensus 676 eNIlfg~----~--~-~~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~-~IllLD 744 (1059)
|-+.|.. | . ++ +.+++|++..+|++- -|..||.-|..||..||.|+.||=-|..|| .|+.||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 9998863 2 2 23 345788888777643 345799999999999999999999999999 889999
Q ss_pred CCCcccCHHHHHHHHHHHHHH-hcCCCEEEEEcCCccc--cccCCeEEEE-eCCeEEEecChHHH
Q 001528 745 DPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF--LSEVDRILVL-EGGQITQSGNYQEL 805 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~-~l~~kTvIlVTH~l~~--l~~aD~Iivl-~~G~I~e~Gt~~eL 805 (1059)
||||+||++++..|++ .++. ...|+|++..=||++. .++.|+++.| ++|+.+..|+..+-
T Consensus 956 EPTSGLDsqaA~~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred CCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9999999999998764 4544 4589999999999975 6899999999 56899999986653
No 387
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=2.2e-17 Score=180.48 Aligned_cols=270 Identities=20% Similarity=0.210 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1059)
Q Consensus 280 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy 358 (1059)
++..++.++..+...+.|+++..+++...++..+ ....+.+..++++..++.......+.+...+.+.+++..++..+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888889999999999986544332 334444444444455555555555566678999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1059)
Q Consensus 359 ~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~~-~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~l~~~~ 437 (1059)
+|.++.+....+++++|+++|++++|++++++..... ..+......++.++++++..-...+++.++.+++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 9999999998888999999999999999999876543 333344444444555444443334444444555666677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001528 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMSPTIISS 516 (1059)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~~~~~~~v~~ 516 (1059)
.++.++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++..++..+...+....... ..............
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998888777655544433322222 22222233332334
Q ss_pred HHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHH
Q 001528 517 VIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1059)
Q Consensus 517 ~~f~~~~l-~~~~~lt~~~~f~~l~l~~~l~~pl 549 (1059)
+.+.+..+ ..++.++++.+++++.+++.+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 44444555 5668999999999999999998886
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.9e-20 Score=214.73 Aligned_cols=181 Identities=27% Similarity=0.452 Sum_probs=146.5
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--------------EEEEccc----ccccccC
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQT----SWIQSGS 673 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--------------iayv~Q~----pwi~~~T 673 (1059)
.++|+||++++||.++|.|-.|||+|=|+.+|.|.-++.+|+|.++|+ |+|||-+ --+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 578999999999999999999999999999999988899999999994 9999974 4577889
Q ss_pred HHHHhccCC--------CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 674 IreNIlfg~--------~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
|++||.+.. ..++.+-++..+. ..+++..=..+.++.| .+||||-+|+|.|||.++.+|+|+||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999998751 1233333333222 1222222223333444 5799999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEe
Q 001528 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~ 799 (1059)
||-++|.-+.+.|++ .|.++ -+|+++|+||..+.. +..||||+||++|+|+..
T Consensus 428 PTRGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 428 PTRGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred CCcCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999984 56654 479999999999866 568999999999999864
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.4e-19 Score=190.90 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=112.2
Q ss_pred ccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCc-----cE----EEE----cCeEEEEcccccccccCHHHHhc
Q 001528 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNIL 679 (1059)
Q Consensus 613 L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~-----G~----I~v----~g~iayv~Q~pwi~~~TIreNIl 679 (1059)
.+++++++.+| +++|+||+|||||||+.+|.-.+.... |. +.- .+.|.++.|+.-+.. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 45677888877 889999999999999999864332211 21 000 124666666654333 2
Q ss_pred cCCCC--CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh----hcCCCEEEEcCCCcccCHH
Q 001528 680 YGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAH 753 (1059)
Q Consensus 680 fg~~~--~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IllLDdp~SAlD~~ 753 (1059)
... ++++.+++++. .+ ...++..+||||||||++||||+ +.+|+++||||||+++|..
T Consensus 84 --~~~~~~~~~~~~~l~~----------~~----~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 --PLCVLSQDMARSFLTS----------NK----AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred --cCCHHHHHHHHHHhcc----------cc----ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 111 22344444433 11 12345678999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CCEEEEEcCCccccccCCeEEEEeCCe
Q 001528 754 TAATLFNECVMAALE----KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1059)
Q Consensus 754 t~~~i~~~~i~~~l~----~kTvIlVTH~l~~l~~aD~Iivl~~G~ 795 (1059)
....+. +.+....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 148 ~~~~~~-~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKIST-DLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHH-HHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 988876 45655432 358999999999999999999998764
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=1.7e-20 Score=183.79 Aligned_cols=184 Identities=26% Similarity=0.417 Sum_probs=150.7
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEccc-ccccccCHHHH
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQT-SWIQSGSIRDN 677 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~-pwi~~~TIreN 677 (1059)
-|-.+|.++..||..=+|||+||||||||..+.|.. |-+|+|.++| +-||.+|+ .-.|-.-|-.-
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 467789999999999999999999999999999976 4689999998 36888885 45677778888
Q ss_pred hccCCCCC--HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc-------CCCEEEEcCCCc
Q 001528 678 ILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFS 748 (1059)
Q Consensus 678 Ilfg~~~~--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~-------~~~IllLDdp~S 748 (1059)
+....|.. .+.+.++++.-+|++. .|..-..||||+.|||-||-.+++ ++.++|+|||-+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 88877752 2455666665555442 344557899999999999998885 457899999999
Q ss_pred ccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcc-ccccCCeEEEEeCCeEEEecChHHHHHc
Q 001528 749 AVDAHTAATLFNECVMAA-LEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1059)
Q Consensus 749 AlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~-~l~~aD~Iivl~~G~I~e~Gt~~eL~~~ 808 (1059)
.||...+..+ ++.+... -+|.|+|+..|++. ++++||++..++.|++..+|.-+|.+..
T Consensus 162 ~LDvAQ~~aL-drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 162 SLDVAQQSAL-DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred chhHHHHHHH-HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999887764 4555443 37999999999995 6999999999999999999999998854
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=203.30 Aligned_cols=208 Identities=24% Similarity=0.397 Sum_probs=142.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccc
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~ 671 (1059)
...+.++|.++++.+ .+.++|..|++.+|+..+++|++||||||+|++|-|--.|..-++.+ ...+|+.--=.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCch
Confidence 346899999999864 57999999999999999999999999999999999988886655532 22222211111
Q ss_pred c-CHHHHhccCCC------CCHHHHHHHHHH-------------cCCchH------HhcCC-CCCC-ccccCCCCCCChH
Q 001528 672 G-SIRDNILYGKP------MDKARYDKAIKA-------------CALDKD------INNFD-HGDL-TEIGQRGLNLSGG 723 (1059)
Q Consensus 672 ~-TIreNIlfg~~------~~~~~y~~vl~a-------------c~L~~d------i~~Lp-~Gd~-T~IGe~G~~LSGG 723 (1059)
. +++.-+.+... +-.|+|...++. ..++.| -+.|+ .|.. ...-.+-.+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1 11111111100 001111111111 000000 00111 1211 1223356789999
Q ss_pred HHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCC-EEEEEcCCcccccc-CCeEEEEeCCe-EEEec
Q 001528 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQSG 800 (1059)
Q Consensus 724 QkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~k-TvIlVTH~l~~l~~-aD~Iivl~~G~-I~e~G 800 (1059)
||-|++||||+..+|+++||||||.+||.++-..+ ++.+... ++ |.++++|.-++|+. |-+|+-|++++ +...|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999998875 4444433 44 89999999999987 89999999999 88999
Q ss_pred ChHHHHHcC
Q 001528 801 NYQELLLAG 809 (1059)
Q Consensus 801 t~~eL~~~~ 809 (1059)
+|+......
T Consensus 303 nydqy~~tr 311 (614)
T KOG0927|consen 303 NYDQYVKTR 311 (614)
T ss_pred CHHHHhhHH
Confidence 999988654
No 392
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4e-19 Score=194.57 Aligned_cols=195 Identities=23% Similarity=0.432 Sum_probs=146.2
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccc-c
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pw-i 669 (1059)
..+-++|++|.|+. ..|.+++++|-|.--+.+|||||+|.||||||++|+|.++|.+|+..-+- +|++-.|+.- -
T Consensus 585 PvLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 45778999999975 36899999999999999999999999999999999999999999886543 5888888642 1
Q ss_pred --cccCHHHHhc--cCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcC
Q 001528 670 --QSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1059)
Q Consensus 670 --~~~TIreNIl--fg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDd 745 (1059)
...|--|-+. |..||. +-++.+-..+|..- -.|. +-..||||||.||+||--.++.|||+||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq--~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQ--EARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred hccccCHHHHHHHhcCCChH--HHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 1234444442 444433 33344444444321 1121 235799999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCC-eEEEEeCCeEEE-ecChHH
Q 001528 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD-RILVLEGGQITQ-SGNYQE 804 (1059)
Q Consensus 746 p~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD-~Iivl~~G~I~e-~Gt~~e 804 (1059)
||.+||.++-..+ .++|+.. +-.||+|||.-..+...| ...|++|-.|-| .|.+++
T Consensus 731 PTNNLDIESIDAL-aEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 731 PTNNLDIESIDAL-AEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCCCcchhhHHHH-HHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 9999999987765 4567654 347999999999998887 456666665644 355544
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=5.1e-19 Score=199.50 Aligned_cols=192 Identities=23% Similarity=0.381 Sum_probs=157.9
Q ss_pred CcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC--eEEEEccccccc
Q 001528 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1059)
Q Consensus 593 ~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g--~iayv~Q~pwi~ 670 (1059)
..+++.+++|.|++++. +.++++|+++..-+.+++||+.|+||||+++.+.|+..|..|.+.+.+ +|+|-.|...=+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF 439 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH
Confidence 45899999999987643 799999999999999999999999999999999999999999999887 699999965422
Q ss_pred -ccCHHHHhccCCCC---CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCC
Q 001528 671 -SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1059)
Q Consensus 671 -~~TIreNIlfg~~~---~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp 746 (1059)
+-.+.+==..-+.+ .+|+|++.+..-+|..++..-+ -..||||||-||++|-....+|.+|+||||
T Consensus 440 l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 21111111111112 7899999999999998887532 256999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEE
Q 001528 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1059)
Q Consensus 747 ~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e 798 (1059)
|..||.++-..+- ++++.. + --||+|||+.+++.. |+.+.+.+||+|..
T Consensus 510 TNhLD~dsl~AL~-~Al~~F-~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 510 TNHLDRDSLGALA-KALKNF-N-GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CccccHHHHHHHH-HHHHhc-C-CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999877653 455433 2 379999999999976 89999999999975
No 394
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.77 E-value=4e-18 Score=192.86 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=167.2
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g------------- 658 (1059)
+..++++|++..= +.+.+.++||||++++||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~--~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKD--RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeec--CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4567888888753 2235789999999999999999999999999999999999999999999988
Q ss_pred --eEEEEccccc----ccccCHHHHhccCCCC----------CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCCh
Q 001528 659 --SIAYVSQTSW----IQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1059)
Q Consensus 659 --~iayv~Q~pw----i~~~TIreNIlfg~~~----------~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSG 722 (1059)
.+||||.+.. +..-|+.||+.++.-. +..++++..+. +-+.++.-+.|-++. -.+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~--li~~fdVr~~~~~~~----a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE--LIEEFDVRAPSPDAP----ARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH--HHHHcCccCCCCCcc----hhhcCC
Confidence 3799998874 7888999999876432 33333333222 223333335555544 457999
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccc-cccCCeEEEEeCCeEEEecC
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~-l~~aD~Iivl~~G~I~e~Gt 801 (1059)
|+.||+-+||-+-++|+++|...||-+||....+.|.+..+...-+|+.+++|+-.++. +.-||+|.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999987777667789999999999987 57799999999999997766
Q ss_pred hHH
Q 001528 802 YQE 804 (1059)
Q Consensus 802 ~~e 804 (1059)
.+|
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 554
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.4e-19 Score=200.84 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=144.0
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhC---CCCCCccEEEEcCeEEEEccccc
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG---EIPKISGTVNLYGSIAYVSQTSW 668 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llG---e~~~~~G~I~v~g~iayv~Q~pw 668 (1059)
...|.++|.+.+|. ++..|.+-|+++..|...++||++|+||||||++|.. ..-|.+-++ .|.--+..|+ -
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~--~g~~t~~~~~-~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV--RGDDTEALQS-V 151 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe--eccchHHHhh-h
Confidence 34688888888886 3579999999999999999999999999999999987 222221111 1211111111 1
Q ss_pred ccccCHHHHhccCCC---C--C-HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEE
Q 001528 669 IQSGSIRDNILYGKP---M--D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1059)
Q Consensus 669 i~~~TIreNIlfg~~---~--~-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1059)
+-.+|-|.-.+.-.+ . + +|-|.+++.--+..++.+..|- ..||||=|-|++||||+.++|||||
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pDlLL 221 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPDLLL 221 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCCEEe
Confidence 222333333332221 0 2 2334447777777888777763 5799999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeE-EEecChHHHHHcC
Q 001528 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI-TQSGNYQELLLAG 809 (1059)
Q Consensus 743 LDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I-~e~Gt~~eL~~~~ 809 (1059)
|||||..||.+.-..+ ++.+... +.|+|+|+|.-.||.+ |-.||.+++-|+ ...|+|++..+.+
T Consensus 222 LDEPTNhLDv~av~WL-e~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWL-ENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred ecCCcccchhHHHHHH-HHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 9999999999998876 4555443 3799999999999977 678999988776 4688888887654
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=192.49 Aligned_cols=179 Identities=22% Similarity=0.358 Sum_probs=137.6
Q ss_pred eeeEeeCCCCCCCcccceeeee-----cCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccc-ccccc
Q 001528 599 EGNFSWDPELAIPTLRGVNLDI-----KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1059)
Q Consensus 599 ~~sf~~~~~~~~~~L~~inl~i-----~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~p-wi~~~ 672 (1059)
+.-++|+.- ...+.+..|++ ..||.++|+||+|-||||+++.|.|.++|++|+ ..+=+|+|=||-- --++|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 344566532 23555666655 467889999999999999999999999999998 5556899999942 34999
Q ss_pred CHHHHhccCCC--CCHHHHH-HHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcc
Q 001528 673 SIRDNILYGKP--MDKARYD-KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1059)
Q Consensus 673 TIreNIlfg~~--~~~~~y~-~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SA 749 (1059)
||++=+.-..+ +...+|+ ++++--.|++-++ ..-.+||||+-||||+|-||.++||+||||||.+-
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99997753322 4455554 3444444444333 33567999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc-CCeEEEEe
Q 001528 750 VDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 750 lD~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
||.+..- +..++|+... .+||.++|-|.+-.+.. +|+++|.+
T Consensus 486 LDvEqR~-~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRI-IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHH-HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9998654 3457776643 68999999999998876 79999985
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.75 E-value=1.2e-18 Score=188.88 Aligned_cols=187 Identities=19% Similarity=0.214 Sum_probs=140.6
Q ss_pred eeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHh---c----cCCCCCHHHHH
Q 001528 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI---L----YGKPMDKARYD 690 (1059)
Q Consensus 618 l~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNI---l----fg~~~~~~~y~ 690 (1059)
+.+.+||.++|+|++|+|||||++.+.+.++...+++. .+.|+.+++-.--..+.+.| . ++.|. ..++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~---~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~-~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY---LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPP-ERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE---EEEEEccCCCccHHHHHHHhccEEEEecCCCCH-HHHHH
Confidence 57889999999999999999999999999987644432 25566776543333344444 1 23221 12221
Q ss_pred ---HHH---H---HcC-----CchHHhcCCCCCCccccCCCCCCChHH--------HHHHHHHHHhhcCCCEEEEcCCCc
Q 001528 691 ---KAI---K---ACA-----LDKDINNFDHGDLTEIGQRGLNLSGGQ--------KQRIQLARAVYNDADIYLFDDPFS 748 (1059)
Q Consensus 691 ---~vl---~---ac~-----L~~di~~Lp~Gd~T~IGe~G~~LSGGQ--------kQRIaLARAly~~~~IllLDdp~S 748 (1059)
.+. + ..+ +-|++..+|+++++.+|+.|.++|||| |||+++||+..++++|.+| ||+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~ 164 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATA 164 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeh
Confidence 111 1 111 346789999999999999999999999 9999999999999999999 999
Q ss_pred ccCHHHHHH-HHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHHHHHcCchHHHHHH
Q 001528 749 AVDAHTAAT-LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1059)
Q Consensus 749 AlD~~t~~~-i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~~~~~~~~~l~~ 817 (1059)
++|+.++.. +.-+.+++ .++|.|+++|++....++|.|.||++|++ +++++.+++.|+.+..
T Consensus 165 ~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 165 LVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred eecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 999866654 33122222 67999999999999999999999999998 7888877767766543
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=4.7e-18 Score=180.08 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=111.3
Q ss_pred cccceeeeecCCc-EEEEEccCCCChhHHHHHHh--------CCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCC
Q 001528 612 TLRGVNLDIKWAQ-KIAVCGSVGAGKSSLLYAIL--------GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK 682 (1059)
Q Consensus 612 ~L~~inl~i~~G~-~vaIvG~sGsGKSTLl~~ll--------Ge~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~ 682 (1059)
...++|+++++|+ .++|+||+|||||||++.|. |.+.|..+.+ .++|++|.--
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~~~~-------------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFENIFA-------------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccEEEE--------------
Confidence 3457899999995 69999999999999999988 5444432211 2344444311
Q ss_pred CCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHH
Q 001528 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762 (1059)
Q Consensus 683 ~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~ 762 (1059)
.+ |++..+.++-.++|+|+|||..+++++ .+|+++++|||++++|+.....+....
T Consensus 78 ---------------------~l--g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 78 ---------------------DI--GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ---------------------ec--CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 11 111123344468999999999999996 899999999999999999998876655
Q ss_pred HHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeEEEe
Q 001528 763 VMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 763 i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~ 799 (1059)
+..+. ++.|+|++||..+....+|++++|++|++...
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 134 LEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 65543 47899999999777788999999999999765
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=3e-17 Score=175.13 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=109.4
Q ss_pred cceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEE-E---EcCeEEEEcccccc---cccCHHHHhccCCC---
Q 001528 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-N---LYGSIAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1059)
Q Consensus 614 ~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I-~---v~g~iayv~Q~pwi---~~~TIreNIlfg~~--- 683 (1059)
+++.+++.+| +.+|+|++|||||||+.+|.-.+-...... . .+.-+..=.+++++ ++.. ..+|.+.++
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~-~~~~~~~n~~~~ 92 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN-PGNIQVDNLCQF 92 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC-CCccccCCceEE
Confidence 4556665554 779999999999999998854432111000 0 00001111111111 0000 001333333
Q ss_pred CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH----hhcCCCEEEEcCCCcccCHHHHHHHH
Q 001528 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA----VYNDADIYLFDDPFSAVDAHTAATLF 759 (1059)
Q Consensus 684 ~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA----ly~~~~IllLDdp~SAlD~~t~~~i~ 759 (1059)
.++++..+....... +-+..+|.+++.. ..+...||||||||+.+|++ +..+|+++++||||++||++..+.+.
T Consensus 93 ~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~ 170 (213)
T cd03277 93 LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF 170 (213)
T ss_pred EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH
Confidence 245555555444322 3345667666543 45678999999999887755 45899999999999999999999876
Q ss_pred HHHHHHhc-C-C-CEEEEEcCCccc-cccCC--eEEEEeCCe
Q 001528 760 NECVMAAL-E-K-KTVILVTHQVEF-LSEVD--RILVLEGGQ 795 (1059)
Q Consensus 760 ~~~i~~~l-~-~-kTvIlVTH~l~~-l~~aD--~Iivl~~G~ 795 (1059)
+ .+.... + + .|+|++||++.. +..+| +|++|++|+
T Consensus 171 ~-~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 171 D-MLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred H-HHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 4 555543 3 4 479999999854 55665 788888886
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.73 E-value=4e-17 Score=212.66 Aligned_cols=101 Identities=24% Similarity=0.383 Sum_probs=89.7
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHhhcC---CCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccc
Q 001528 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL 782 (1059)
Q Consensus 707 ~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~---~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l 782 (1059)
-||.+ +|..-.+||||+.|||-||.-+.++ +.+|+|||||.+|+.+.-+++. +++..+ -+|.|+|+|.|+++++
T Consensus 1688 LgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivieH~~~~i 1765 (1809)
T PRK00635 1688 LGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYIDHDPALL 1765 (1809)
T ss_pred CCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHH
Confidence 36665 6999999999999999999999976 7899999999999999988876 566665 3799999999999999
Q ss_pred ccCCeEEEE------eCCeEEEecChHHHHHcC
Q 001528 783 SEVDRILVL------EGGQITQSGNYQELLLAG 809 (1059)
Q Consensus 783 ~~aD~Iivl------~~G~I~e~Gt~~eL~~~~ 809 (1059)
+.||+|+-| +.|+|+.+||++|+.+.+
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 999999999 468999999999998754
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=5.1e-17 Score=191.81 Aligned_cols=100 Identities=28% Similarity=0.565 Sum_probs=89.6
Q ss_pred cccCCCCCCChHHHHHHHHHHHhhcCC---CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCe
Q 001528 712 EIGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDR 787 (1059)
Q Consensus 712 ~IGe~G~~LSGGQkQRIaLARAly~~~---~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~ 787 (1059)
.+|..-.+||||+.|||-||.-|.+++ -+|||||||.+|-.|--+++. +++.++. +|.|||+|-|+++.++.||+
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVIk~AD~ 893 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVIKTADW 893 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceEeecCE
Confidence 468889999999999999999999988 999999999999999888876 5676654 89999999999999999999
Q ss_pred EEEE------eCCeEEEecChHHHHHcCchH
Q 001528 788 ILVL------EGGQITQSGNYQELLLAGTAF 812 (1059)
Q Consensus 788 Iivl------~~G~I~e~Gt~~eL~~~~~~~ 812 (1059)
|+-| +.|+|+.+||++|+.+..+.|
T Consensus 894 IIDLGPeGG~~GG~iva~GTPeeva~~~~S~ 924 (935)
T COG0178 894 IIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924 (935)
T ss_pred EEEcCCCCCCCCceEEEecCHHHHHhCccch
Confidence 9999 578999999999998765444
No 402
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.71 E-value=1.2e-16 Score=160.75 Aligned_cols=200 Identities=23% Similarity=0.374 Sum_probs=152.1
Q ss_pred CCCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-----------
Q 001528 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1059)
Q Consensus 591 ~~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~----------- 659 (1059)
.+.+|++.+..|+|+.. .|..-|+|+++|.|....+||.+||||||||+.|.|---...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 35689999999999764 48999999999999999999999999999999999987777799988763
Q ss_pred --EEEEcc----------cccccccCHHHHhccCCCC-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH
Q 001528 660 --IAYVSQ----------TSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1059)
Q Consensus 660 --iayv~Q----------~pwi~~~TIreNIlfg~~~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 726 (1059)
..|..- +.-||-+-=.+-..||-.. |.+|-++.++.-. -|+. =|-..+|-|||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLD--Idl~-----------WRmHkvSDGqrR 154 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILD--IDLR-----------WRMHKVSDGQRR 154 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhee--ccce-----------EEEeeccccchh
Confidence 333321 2222222223445555543 4455555554421 1221 234578999999
Q ss_pred HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHH--hcCCCEEEEEcCCcccccc-CCeEEEEeCCeEEEecChH
Q 001528 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA--ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1059)
Q Consensus 727 RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~--~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I~e~Gt~~ 803 (1059)
||.|+-.+++.=+++||||.|--||.-....+. +.++. .-+|.|+|..||=.+-|.. +.+++.|.+|+++..-+|+
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 999999999999999999999999998887765 34543 3479999999999988755 7899999999999876666
Q ss_pred HHH
Q 001528 804 ELL 806 (1059)
Q Consensus 804 eL~ 806 (1059)
+..
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 654
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=3.8e-17 Score=202.49 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=158.7
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCC---ccEEEEcC----------eEEEEccccccc-ccCHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWIQ-SGSIR 675 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~---~G~I~v~g----------~iayv~Q~pwi~-~~TIr 675 (1059)
..+|+|++.-++||+.+.+.||.||||||||+++.|..+.. .|+|..+| .++|++|+.+-+ .-|+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 46899999999999999999999999999999999997643 56888887 499999987655 57999
Q ss_pred HHhccCC-------CCC---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCC-CCChHHHHHHHHHHHhhcCCCEEEEc
Q 001528 676 DNILYGK-------PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFD 744 (1059)
Q Consensus 676 eNIlfg~-------~~~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~-~LSGGQkQRIaLARAly~~~~IllLD 744 (1059)
|-+-|.. .+| +++|.+.+.-- .--+-.|.+..||.||.... ..|||||.||++|-++..++.++.+|
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~--~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDY--LLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHH--HHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9998852 133 33433211000 00133567789999998744 68999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcc--ccccCCeEEEEeCCeEEEecChHHHHH
Q 001528 745 DPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1059)
Q Consensus 745 dp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~--~l~~aD~Iivl~~G~I~e~Gt~~eL~~ 807 (1059)
|+|-+||+.|+-++. ++++.. .-+.|.++.=||.+ ...-.|+|++|.+|+++.+|+.+|.+.
T Consensus 286 e~t~GLDSsTal~ii-k~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQII-KALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccccHHHHHHHH-HHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999876 577654 45788888888875 478899999999999999999999874
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.2e-16 Score=177.82 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHhhc----CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeCC
Q 001528 719 NLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1059)
Q Consensus 719 ~LSGGQkQRIaLARAly~----~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G 794 (1059)
+||||||||++|||+++. +|++++||||++++|++...++. +.+....+++|+|++||+++....||++++|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 599999999999997543 99999999999999999999875 5677777789999999999988999999999887
Q ss_pred eE
Q 001528 795 QI 796 (1059)
Q Consensus 795 ~I 796 (1059)
..
T Consensus 249 ~~ 250 (276)
T cd03241 249 VE 250 (276)
T ss_pred cC
Confidence 43
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.68 E-value=9.5e-17 Score=164.20 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=96.5
Q ss_pred eeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe--EE-EEcccccccccCHHHHhccCCCCCHHHHHHHH
Q 001528 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IA-YVSQTSWIQSGSIRDNILYGKPMDKARYDKAI 693 (1059)
Q Consensus 617 nl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~--ia-yv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl 693 (1059)
++.+.+|.+++|+||+||||||+++++..-.-..+|.+..... .+ ++|+..--+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL----------------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----------------------
Confidence 4455566799999999999999999976555444444433111 11 111111000
Q ss_pred HHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc----CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C
Q 001528 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAAL-E 768 (1059)
Q Consensus 694 ~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~----~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~ 768 (1059)
..+. ..|||||+||++|||++.. +|+++++|||++++|++....+.+ .+.+.. +
T Consensus 72 ---------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~-~l~~~~~~ 130 (162)
T cd03227 72 ---------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE-AILEHLVK 130 (162)
T ss_pred ---------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhc
Confidence 0011 1199999999999999986 789999999999999999998764 454443 4
Q ss_pred CCEEEEEcCCccccccCCeEEEEeC
Q 001528 769 KKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 769 ~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
+.|+|++||+.+....+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 6899999999999999999999964
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.65 E-value=5e-16 Score=170.57 Aligned_cols=177 Identities=27% Similarity=0.337 Sum_probs=136.2
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC--------CCCCccEEEEcCe--EEEEcc--cccccccCHHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--------IPKISGTVNLYGS--IAYVSQ--TSWIQSGSIRDN 677 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe--------~~~~~G~I~v~g~--iayv~Q--~pwi~~~TIreN 677 (1059)
..+|+|+||+|++|+.++|+|+|||||||++..|+|. |.|++|.|.+.-+ -|.+|- +|-+=.-||.|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 4689999999999999999999999999999999987 5789999987643 233443 344444466665
Q ss_pred hccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHH
Q 001528 678 ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757 (1059)
Q Consensus 678 Ilfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~ 757 (1059)
+ +..+-|...-.+++..++|.+-.- --.+=..||-|||-|..||+++-.+|.+++-||--|.||..|+.+
T Consensus 476 l-~s~tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 476 L-RSKTGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred H-hhccCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 4 222335455566777777765322 123345699999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc--CCCEEEEEcCCcccccc--CCeEEEEeCCeEE
Q 001528 758 LFNECVMAAL--EKKTVILVTHQVEFLSE--VDRILVLEGGQIT 797 (1059)
Q Consensus 758 i~~~~i~~~l--~~kTvIlVTH~l~~l~~--aD~Iivl~~G~I~ 797 (1059)
+-.+ |..+. .+-|.+.||||.++... -|.++.+.=|+..
T Consensus 546 VArk-iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 546 VARK-ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHH-HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 7644 55544 68999999999999765 4899888777654
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.65 E-value=2.6e-16 Score=174.92 Aligned_cols=176 Identities=25% Similarity=0.376 Sum_probs=137.3
Q ss_pred eeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEE-----------cC---------
Q 001528 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-----------YG--------- 658 (1059)
Q Consensus 599 ~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v-----------~g--------- 658 (1059)
++..+|..+ .+.|.++- ..++|+.++|+|++|-||||-++.|.|++.|.=|+-.= .|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 356666543 24444433 25689999999999999999999999999998765421 11
Q ss_pred ----------eEEEEcccccccccCHHHHhccCCCCCH-HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH
Q 001528 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPMDK-ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1059)
Q Consensus 659 ----------~iayv~Q~pwi~~~TIreNIlfg~~~~~-~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 727 (1059)
++-||.--|-.+.||++|=+. ..|+ .+++++++.-+|++-++ ..-..||||+-||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk---~~de~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr 221 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLK---KVDERGKFDEVVERLGLENVLD-----------RDVSELSGGELQR 221 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHH---hhhhcCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHH
Confidence 366777788899999999773 2222 56788888888766444 2345799999999
Q ss_pred HHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CCEEEEEcCCcccccc-CCeEEEEe
Q 001528 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 728 IaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~-~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
+|||-|+.+++|+|++|||+|-||....-.. .+.|+++.+ +|+||+|-|.+..|.. +|.|.++=
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~-ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNA-ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHH-HHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999998876654 467788777 7999999999999976 78888773
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=3.9e-16 Score=167.53 Aligned_cols=153 Identities=17% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEE-EEcccccccccCHHHHhccCCCCCHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA-YVSQTSWIQSGSIRDNILYGKPMDKAR 688 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~ia-yv~Q~pwi~~~TIreNIlfg~~~~~~~ 688 (1059)
.++.+|+++++++|+.++|+||+||||||+++.+.= +.+-.+++ |||.+.--.. +.|+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~~~--~~~~----------- 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSADIP--IVDC----------- 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEEEe--ccce-----------
Confidence 478999999999999999999999999999998751 11112233 5555432111 1111
Q ss_pred HHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHh--hcCCCEEEEcCC---CcccCHHHHHHHHHHHH
Q 001528 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV--YNDADIYLFDDP---FSAVDAHTAATLFNECV 763 (1059)
Q Consensus 689 y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl--y~~~~IllLDdp---~SAlD~~t~~~i~~~~i 763 (1059)
+++..++.++ ...++|+|++||..+|+++ ..+|+++||||| |+++|.........+.+
T Consensus 76 ---il~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 76 ---ILARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ---eEeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 1111122211 1357999999999999999 899999999999 99999887754332223
Q ss_pred HHhcCCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 764 ~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
.. .+++|+|++||..+....+|++..+++|++...++
T Consensus 139 ~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 139 AT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Hh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 22 24789999999766667799999999999977653
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.9e-15 Score=164.36 Aligned_cols=88 Identities=18% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCCCCccccCCCCC----CChHHHHHHHHHHHh---------hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCE
Q 001528 705 FDHGDLTEIGQRGLN----LSGGQKQRIQLARAV---------YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771 (1059)
Q Consensus 705 Lp~Gd~T~IGe~G~~----LSGGQkQRIaLARAl---------y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kT 771 (1059)
-|+.|+..+.-++.+ +|+|||||+++||++ +++|+++|||||+++||++..+.+. +.+... + .
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~-~~l~~~--~-q 240 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL-DAIEGR--V-Q 240 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH-HHhhcC--C-C
Confidence 577888877666654 899999999999997 4899999999999999999998876 345432 2 4
Q ss_pred EEEEcCCcccccc-C---CeEEEEeCCeE
Q 001528 772 VILVTHQVEFLSE-V---DRILVLEGGQI 796 (1059)
Q Consensus 772 vIlVTH~l~~l~~-a---D~Iivl~~G~I 796 (1059)
++++||+...+.. + ++|+.+++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5566655544433 4 78999999987
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.56 E-value=2.5e-15 Score=159.54 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=102.5
Q ss_pred eeeeecCCcEEEEEccCCCChhHHHHHHhC-CCCCCccEEEE--cCeEEEEcccccccccCHHHHhccCCCCCHHHHHHH
Q 001528 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNL--YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692 (1059)
Q Consensus 616 inl~i~~G~~vaIvG~sGsGKSTLl~~llG-e~~~~~G~I~v--~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~v 692 (1059)
.|+++.+|++++|+||+|||||||+++|.+ .+....|...- ...++|+.|
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq--------------------------- 74 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR--------------------------- 74 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE---------------------------
Confidence 445566899999999999999999999983 33222232100 011222111
Q ss_pred HHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCE
Q 001528 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKT 771 (1059)
Q Consensus 693 l~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kT 771 (1059)
.+..++..+ .+-++-..+++++|| ++.+.+...+|+++|||||++++|+.....+....+.... ++.|
T Consensus 75 --------i~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 75 --------IFTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred --------EEEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 122222221 122333456666665 7777788899999999999999999988776544444332 4889
Q ss_pred EEEEcCCccccccCCeEEEEeCCeEEEecCh
Q 001528 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1059)
Q Consensus 772 vIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~ 802 (1059)
+|++||+.+....+|++..+++|++.+.++.
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 9999999999999999999999999887654
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.54 E-value=9.7e-15 Score=154.20 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=94.7
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCC-CccEEEEcCeEEEEccccccc-ccCHHHHhccCCCCCH-
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYGSIAYVSQTSWIQ-SGSIRDNILYGKPMDK- 686 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~-~~G~I~v~g~iayv~Q~pwi~-~~TIreNIlfg~~~~~- 686 (1059)
+++++|++++. |+.++|+||+|||||||+++|.|.... ..|. .+.+ -.++.|..-+| +-|++||+.+|.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPPVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCcccceEEEeccchhccccccChHHH
Confidence 46788887765 799999999999999999999876532 1232 2222 23566644444 5699999998875322
Q ss_pred --HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHH
Q 001528 687 --ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1059)
Q Consensus 687 --~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~ 764 (1059)
++..++++..++ ++|+++|+|||++++|+.....+....+.
T Consensus 90 e~~~~~~iL~~~~~-------------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~ 132 (199)
T cd03283 90 ELRRLKEIVEKAKK-------------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLK 132 (199)
T ss_pred HHHHHHHHHHhccC-------------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHH
Confidence 233333333321 79999999999999999998876554454
Q ss_pred Hh-cCCCEEEEEcCCccccccC
Q 001528 765 AA-LEKKTVILVTHQVEFLSEV 785 (1059)
Q Consensus 765 ~~-l~~kTvIlVTH~l~~l~~a 785 (1059)
.+ -++.|+|++||+++.+...
T Consensus 133 ~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 133 FLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHCCCEEEEEcCcHHHHHhh
Confidence 43 2578999999998875443
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=2.1e-14 Score=180.26 Aligned_cols=95 Identities=27% Similarity=0.458 Sum_probs=85.1
Q ss_pred ccCCCCCCChHHHHHHHHHHHhhcCC--CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEE
Q 001528 713 IGQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRIL 789 (1059)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~--~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Ii 789 (1059)
.+....+|||||+|||.||||+.++| ++|||||||++||++..+++. +.+..+. +|+|+|+|+|+++.+..||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 35667899999999999999999986 899999999999999999876 5666543 5899999999999999999999
Q ss_pred EE------eCCeEEEecChHHHHHc
Q 001528 790 VL------EGGQITQSGNYQELLLA 808 (1059)
Q Consensus 790 vl------~~G~I~e~Gt~~eL~~~ 808 (1059)
+| ++|+|+++|+++|+...
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcC
Confidence 99 99999999999998643
No 413
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=1.7e-14 Score=145.47 Aligned_cols=206 Identities=21% Similarity=0.286 Sum_probs=150.6
Q ss_pred EEeeeEeeCCC-CCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEE-------------------
Q 001528 597 IQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL------------------- 656 (1059)
Q Consensus 597 ~~~~sf~~~~~-~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v------------------- 656 (1059)
++|.+...... ....+.+++|++...||+-++||.||||||-+.++|.|-..- .=.|+-
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHHhh
Confidence 34444443322 234578999999999999999999999999999999997542 222221
Q ss_pred ---cCeEEEEcccccccc---cC----HHHHhcc---CCC------CCHHHHHHHHHHcCCch--HHhcCCCCCCccccC
Q 001528 657 ---YGSIAYVSQTSWIQS---GS----IRDNILY---GKP------MDKARYDKAIKACALDK--DINNFDHGDLTEIGQ 715 (1059)
Q Consensus 657 ---~g~iayv~Q~pwi~~---~T----IreNIlf---g~~------~~~~~y~~vl~ac~L~~--di~~Lp~Gd~T~IGe 715 (1059)
.-.|+...|+|--.- .+ +-+||-+ -.. +.+.+-.+.++..++++ ||.. .|-
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP----- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP----- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-----
Confidence 115899999986331 22 3456632 111 23455566777888754 5542 122
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh--cCCCEEEEEcCCcccccc-CCeEEEEe
Q 001528 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~--l~~kTvIlVTH~l~~l~~-aD~Iivl~ 792 (1059)
..|--|+-|+|-+|-|+...|.++|-||||.++|+.|..+||. .+..+ -.|.|+++++|.+..+.+ ||+|-||-
T Consensus 157 --~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred --chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 2344577788999999999999999999999999999999984 55433 368899999999998865 99999999
Q ss_pred CCeEEEecChHHHHHcC-chHHH
Q 001528 793 GGQITQSGNYQELLLAG-TAFEQ 814 (1059)
Q Consensus 793 ~G~I~e~Gt~~eL~~~~-~~~~~ 814 (1059)
-|+-+|++.-+++.+.. ..|.+
T Consensus 234 CGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 234 CGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred ecccccccchhHHhcCCCCchHH
Confidence 99999999999999764 34543
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.53 E-value=2.3e-14 Score=180.33 Aligned_cols=94 Identities=27% Similarity=0.445 Sum_probs=84.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCC--CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEE
Q 001528 714 GQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILV 790 (1059)
Q Consensus 714 Ge~G~~LSGGQkQRIaLARAly~~~--~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iiv 790 (1059)
+.+-.+|||||||||+||||+.++| ++|||||||++||++..+.++ +.+..+. +|+|+|+|+|+++.+..||+|++
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 4567799999999999999999997 999999999999999999876 5666553 58999999999999999999999
Q ss_pred E------eCCeEEEecChHHHHHc
Q 001528 791 L------EGGQITQSGNYQELLLA 808 (1059)
Q Consensus 791 l------~~G~I~e~Gt~~eL~~~ 808 (1059)
| ++|+|+.+|+++|+.+.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998754
No 415
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.48 E-value=1.9e-13 Score=147.17 Aligned_cols=159 Identities=21% Similarity=0.354 Sum_probs=101.4
Q ss_pred cceeeeecCCcEEEEEccCCCChhHHHHHH---hCCCCCC-------ccEEEE--------cCeEEEEccccc----ccc
Q 001528 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAI---LGEIPKI-------SGTVNL--------YGSIAYVSQTSW----IQS 671 (1059)
Q Consensus 614 ~~inl~i~~G~~vaIvG~sGsGKSTLl~~l---lGe~~~~-------~G~I~v--------~g~iayv~Q~pw----i~~ 671 (1059)
++..+.+.+ .+++|+||+||||||++.|| +|+-+.. +.-|.- ...|....+++- +.+
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 355566654 59999999999999999999 5642210 111111 112333222111 000
Q ss_pred c--CHHHH---------hccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH----HHhhc
Q 001528 672 G--SIRDN---------ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA----RAVYN 736 (1059)
Q Consensus 672 ~--TIreN---------Ilfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA----RAly~ 736 (1059)
. .|+.. -.-+.+...++|.+.++...+..+ .||||||.+++|| .+-+.
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~ 157 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYK 157 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccccccc
Confidence 0 11100 111233566778887777666654 9999999999987 44578
Q ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEE
Q 001528 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1059)
Q Consensus 737 ~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl 791 (1059)
++++|+|||+.++||....+++. +.+....++.-+|++||+..+...||+.+.+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLA-DLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHH-HHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 89999999999999999999876 5677777789999999999999999988776
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=3.3e-13 Score=179.18 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=102.7
Q ss_pred ccccc--ccccCHHHHhccCCCC-CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHH------HHHHHHHh
Q 001528 664 SQTSW--IQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ------RIQLARAV 734 (1059)
Q Consensus 664 ~Q~pw--i~~~TIreNIlfg~~~-~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ------RIaLARAl 734 (1059)
-.+-| .|+||++|||.+ +|- +++ ..+++..+...++..+|.| +|+++.+| +||||||| |++||||+
T Consensus 1146 ~~~~w~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~ 1220 (1311)
T TIGR00606 1146 IRDLWRSTYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETF 1220 (1311)
T ss_pred HHHHHHHHcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHH
Confidence 34556 789999999999 664 444 6888888999999999999 89999887 89999999 99999999
Q ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc------CCCEEEEEcCCccccc------cCCeEEEE
Q 001528 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL------EKKTVILVTHQVEFLS------EVDRILVL 791 (1059)
Q Consensus 735 y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l------~~kTvIlVTH~l~~l~------~aD~Iivl 791 (1059)
..+|++++|||||++||+.+...+. +.+..+. .|.|+|+|||+++++. .+|+.+-+
T Consensus 1221 ~~~~~il~lDEPt~~lD~~~~~~l~-~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1221 CLNCGIIALDEPTTNLDRENIESLA-HALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred hcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999999999998865 4454432 3789999999998865 45666655
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=5.2e-13 Score=141.39 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=99.4
Q ss_pred CCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHH
Q 001528 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKAR 688 (1059)
Q Consensus 609 ~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~ 688 (1059)
+.++.+|+++++++|+.++|.||+||||||+++.+.+..-.. ++ | .|||-.. .+-++.|||..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la--~~---G--~~vpa~~--~~l~~~d~I~~-------- 77 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA--QI---G--CFVPAEY--ATLPIFNRLLS-------- 77 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH--Hc---C--CCcchhh--cCccChhheeE--------
Confidence 357899999999999999999999999999999987653110 00 1 1221111 11255566532
Q ss_pred HHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-
Q 001528 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1059)
Q Consensus 689 y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l- 767 (1059)
.+..+| .+.++..++|+|+||+ +.+-+...+++++|||||++++|+..+..+....+..+.
T Consensus 78 ---------------~~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 78 ---------------RLSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred ---------------ecCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 222222 2335567899999975 555667789999999999999999887777655554433
Q ss_pred CCCEEEEEcCCccccccC
Q 001528 768 EKKTVILVTHQVEFLSEV 785 (1059)
Q Consensus 768 ~~kTvIlVTH~l~~l~~a 785 (1059)
.++|+|++||..+....+
T Consensus 140 ~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 140 KESTVFFATHFRDIAAIL 157 (204)
T ss_pred cCCEEEEECChHHHHHHh
Confidence 589999999998876543
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.38 E-value=5.6e-13 Score=124.59 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC-------------eEEEEcccccccccCHHH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRD 676 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g-------------~iayv~Q~pwi~~~TIre 676 (1059)
.++|++++|++++|+.++|+||||||||||++++. +|++.++| .++|+||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 78898876 27788888 99999999
Q ss_pred Hhcc
Q 001528 677 NILY 680 (1059)
Q Consensus 677 NIlf 680 (1059)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.36 E-value=1.3e-12 Score=139.89 Aligned_cols=147 Identities=17% Similarity=0.122 Sum_probs=97.1
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCC-CCCccEEE--EcCeEEEEcccccccccCHHHHhccCCCCCH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVN--LYGSIAYVSQTSWIQSGSIRDNILYGKPMDK 686 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~-~~~~G~I~--v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~ 686 (1059)
..+.+|++++.++ ++++|+||+||||||+++.+.+.. ....|... -.++++|+.|-. ..-+++||
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~--~~~~~~~~--------- 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF--TRIGASDD--------- 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe--ccCCchhh---------
Confidence 4688999999887 999999999999999999986432 11223211 023455554411 11233333
Q ss_pred HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHH----HHHHHHhh--cCCCEEEEcCC---CcccCHHHHHH
Q 001528 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR----IQLARAVY--NDADIYLFDDP---FSAVDAHTAAT 757 (1059)
Q Consensus 687 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR----IaLARAly--~~~~IllLDdp---~SAlD~~t~~~ 757 (1059)
+|+||.++ ..+++++- .+|+++||||| |+++|....
T Consensus 86 ---------------------------------ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~-- 130 (216)
T cd03284 86 ---------------------------------LAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI-- 130 (216)
T ss_pred ---------------------------------hccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--
Confidence 44444443 34666654 59999999999 888997542
Q ss_pred HHHHHHHHhc--CCCEEEEEcCCccccccCCeEEEEeCCeEEEecChHH
Q 001528 758 LFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 758 i~~~~i~~~l--~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
....+..+. .+.|+|++||..+....+|++..+++|++...++.++
T Consensus 131 -~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 131 -AWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred -HHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCe
Confidence 222222221 3789999999988777788887788898876655443
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.5e-12 Score=143.60 Aligned_cols=201 Identities=24% Similarity=0.383 Sum_probs=144.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccC
Q 001528 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~T 673 (1059)
.|.++|-+.+-. .+..+-|-|+.|-.|...++|||+|-||||||+-|..---...-.| .+-||.|+..--+.|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI----DvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI----DVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC----ceEeeeeeeeecCcH
Confidence 477787776643 3457889999999999999999999999999998854321111112 367888887766666
Q ss_pred HHHHhccC---------------------CCCCHHHHHHHH---HHcCCc-------hHHhcCCCCCCccccCCCC-CCC
Q 001528 674 IRDNILYG---------------------KPMDKARYDKAI---KACALD-------KDINNFDHGDLTEIGQRGL-NLS 721 (1059)
Q Consensus 674 IreNIlfg---------------------~~~~~~~y~~vl---~ac~L~-------~di~~Lp~Gd~T~IGe~G~-~LS 721 (1059)
--+.|+=. ..-..|++++|. ++.+.. +-+.. -|..-+.-++.. .+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 55555422 111134444432 222221 11222 266677777755 689
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc-CCeEEEEeCCeE-EEe
Q 001528 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI-TQS 799 (1059)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~-aD~Iivl~~G~I-~e~ 799 (1059)
||=|-||+||||+|-.|-++.|||||..||-..--.+ ++.+.++ .||.++|+|.-.+|.. |..||.|++-+. ...
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999998876553 5666665 4799999999999976 789999999887 467
Q ss_pred cChHHHH
Q 001528 800 GNYQELL 806 (1059)
Q Consensus 800 Gt~~eL~ 806 (1059)
|+|.-..
T Consensus 492 GNY~~FK 498 (807)
T KOG0066|consen 492 GNYTLFK 498 (807)
T ss_pred chHHHHH
Confidence 8876553
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.29 E-value=3.7e-12 Score=139.98 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=89.7
Q ss_pred cEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe-EEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHH
Q 001528 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1059)
Q Consensus 624 ~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~-iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di 702 (1059)
+-++|+||+|||||||+++|.|++.+.+|+|.++|. +..+ | ++ .+.. .| ...+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~---------------------d-~~-~ei~-~~--~~~~ 165 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIV---------------------D-ER-SEIA-GC--VNGV 165 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecc---------------------h-hH-HHHH-HH--hccc
Confidence 678999999999999999999999999999999883 3311 1 11 0111 11 0111
Q ss_pred hcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccc-
Q 001528 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF- 781 (1059)
Q Consensus 703 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~- 781 (1059)
.+..-|..|.+-++-.. ++.=..++|| .+||++++|||.+. + .++..+....+|+|+|++||..+.
T Consensus 166 ~q~~~~~r~~v~~~~~k----~~~~~~~i~~--~~P~villDE~~~~------e-~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPK----AEGMMMLIRS--MSPDVIVVDEIGRE------E-DVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccccccchH----HHHHHHHHHh--CCCCEEEEeCCCcH------H-HHHHHHHHHhCCCEEEEEechhHHH
Confidence 11222333333332111 1113556666 59999999999753 1 123333444479999999997655
Q ss_pred -c------------ccCCeEEEEeCCeEEEecChHHH
Q 001528 782 -L------------SEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 782 -l------------~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
+ .-+|++++|++|+ ..|+.+++
T Consensus 233 ~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 233 DLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 3 4479999999887 66766554
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.29 E-value=3.7e-12 Score=156.39 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCchHHhcCCCCCCccccCCC------CCCChHHHHHHHHHHHhh----------cCCCEEEEcCCC-ccc
Q 001528 688 RYDKAIKACALDKDINNFDHGDLTEIGQRG------LNLSGGQKQRIQLARAVY----------NDADIYLFDDPF-SAV 750 (1059)
Q Consensus 688 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G------~~LSGGQkQRIaLARAly----------~~~~IllLDdp~-SAl 750 (1059)
.+.+.++..+. +....+|+|.++.+++.| .+||||||||++||||+. .+|++++||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34444544432 222357899999999999 689999999999999987 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeC-CeE
Q 001528 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG-GQI 796 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~-G~I 796 (1059)
|+.....+. +.+... +++|+|+|||+.+....+|++++|++ |+.
T Consensus 511 d~~~~~~~~-~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALL-SILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHH-HHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999998876 567666 88999999999988889999999986 654
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.26 E-value=7.5e-11 Score=136.07 Aligned_cols=76 Identities=29% Similarity=0.336 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHHHhh---------cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccccc---C
Q 001528 718 LNLSGGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE---V 785 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly---------~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~---a 785 (1059)
..+|+||+++++||+++. .+|+|+|||||+|.||++..+.+++ .+... +.+++++||..+.++. .
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~-~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLE-RLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHH-HHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 579999999999999885 7999999999999999999888764 44331 4688999998766543 4
Q ss_pred CeEEEEeCCeE
Q 001528 786 DRILVLEGGQI 796 (1059)
Q Consensus 786 D~Iivl~~G~I 796 (1059)
++++.|++|+|
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 68999999997
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=134.81 Aligned_cols=195 Identities=26% Similarity=0.347 Sum_probs=138.7
Q ss_pred eeEeeCCCCCCCcccceeeeecCCc-----EEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccc-ccccC
Q 001528 600 GNFSWDPELAIPTLRGVNLDIKWAQ-----KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-IQSGS 673 (1059)
Q Consensus 600 ~sf~~~~~~~~~~L~~inl~i~~G~-----~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pw-i~~~T 673 (1059)
+.+.|+. .+..+.+..|.|+.|+ .+.-.|..|-||||+++.+.|..+|++|.=.-.=+|+|=||.-- =+.+|
T Consensus 341 ~~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~t 418 (592)
T KOG0063|consen 341 GRYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGT 418 (592)
T ss_pred heeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccch
Confidence 4466764 3467889999999885 57889999999999999999999998874222236999999632 57789
Q ss_pred HHHHhcc--CCC-CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCccc
Q 001528 674 IRDNILY--GKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1059)
Q Consensus 674 IreNIlf--g~~-~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAl 750 (1059)
+|+-..= -.. .++.-..+|++--.. +..++..-.+||||+.||+|||-++=..||+|+.|||-+-|
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~i-----------e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQI-----------ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYL 487 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhH-----------HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhc
Confidence 9876420 011 233444444443322 22345556899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH--hcCCCEEEEEcCCcccc-ccCCeEEEEeCC--eEEEecChHHHHHc
Q 001528 751 DAHTAATLFNECVMA--ALEKKTVILVTHQVEFL-SEVDRILVLEGG--QITQSGNYQELLLA 808 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~--~l~~kTvIlVTH~l~~l-~~aD~Iivl~~G--~I~e~Gt~~eL~~~ 808 (1059)
|++..... .+++++ +..+||-..|-|..-.- =.||+++|.+.- .....-.++.|++.
T Consensus 488 DSeQRi~A-skvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 488 DSEQRIIA-SKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred ChHHHHHH-HHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99876543 344544 23689999999997543 348999998642 23333455555544
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=7.5e-11 Score=126.04 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=93.7
Q ss_pred CcccceeeeecCCcEEEEEccCCCChhHHHHHHh--CCCCCCccEEEEc--CeEEEEcccccccc--cCHHHHhccCCCC
Q 001528 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--GEIPKISGTVNLY--GSIAYVSQTSWIQS--GSIRDNILYGKPM 684 (1059)
Q Consensus 611 ~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~ll--Ge~~~~~G~I~v~--g~iayv~Q~pwi~~--~TIreNIlfg~~~ 684 (1059)
++-.|++++=..+.+++|+||+|+|||||++.+. +.+ ...|..... .+++|..|.-.-++ .|+.+++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~------ 89 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQ------ 89 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhcc------
Confidence 4556666643334899999999999999999997 444 455654432 46788877532221 1222221
Q ss_pred CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHH
Q 001528 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1059)
Q Consensus 685 ~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~ 764 (1059)
-|. --+-||+++|++...+++++|||||++++|+..+..+....+.
T Consensus 90 -------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 -------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred -------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 010 3456999999999999999999999999999887777666666
Q ss_pred HhcC----CCEEEEEcCCccccccC
Q 001528 765 AALE----KKTVILVTHQVEFLSEV 785 (1059)
Q Consensus 765 ~~l~----~kTvIlVTH~l~~l~~a 785 (1059)
.+.+ +.++|++||..+.....
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHhh
Confidence 5543 24899999999876544
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.16 E-value=2.4e-11 Score=127.19 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=84.6
Q ss_pred EEEEccCCCChhHHHHHHh-CCCCCCccEEEEc--CeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHH
Q 001528 626 IAVCGSVGAGKSSLLYAIL-GEIPKISGTVNLY--GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1059)
Q Consensus 626 vaIvG~sGsGKSTLl~~ll-Ge~~~~~G~I~v~--g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di 702 (1059)
++|+||+|+||||+++.+. ..+-...|...-. .+++|+.|- +
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-----------------------------------l 46 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-----------------------------------F 46 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-----------------------------------E
Confidence 6899999999999999986 4443334432111 122222211 1
Q ss_pred hcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc--CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCCEEEEEcCC
Q 001528 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN--DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQ 778 (1059)
Q Consensus 703 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l--~~kTvIlVTH~ 778 (1059)
..++.. -.+.++-.++|+|++| +++++-. +|+++|+|||++++|+..+..+....+..+. .+.++|++||.
T Consensus 47 ~~~~~~--d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 47 TRIGAS--DSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred EEeCCC--CchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 122211 1133455678888887 4555555 9999999999999999998888766665544 37899999999
Q ss_pred ccccccCCeEEEEeCCeE
Q 001528 779 VEFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 779 l~~l~~aD~Iivl~~G~I 796 (1059)
.+....+|+---++++++
T Consensus 122 ~~l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 122 HELTKLADEHPGVRNLHM 139 (185)
T ss_pred HHHHHHhhcCccceEEEE
Confidence 987666665333344433
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.14 E-value=1.3e-10 Score=145.16 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=100.3
Q ss_pred cEEEEeeeEeeCCCCCCCcccc-----eeeeecCC-cEEEEEccCCCChhHHHHHHhCC-CCCCccEEEEcCeEEEEccc
Q 001528 594 SVKIQEGNFSWDPELAIPTLRG-----VNLDIKWA-QKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQT 666 (1059)
Q Consensus 594 ~i~~~~~sf~~~~~~~~~~L~~-----inl~i~~G-~~vaIvG~sGsGKSTLl~~llGe-~~~~~G~I~v~g~iayv~Q~ 666 (1059)
.+.++++.. |.+++ +|+++.+| +.++|+||+|+||||||+.+.|. +.+..|. |||..
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------~Vpa~ 358 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------PIPAN 358 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------CccCC
Confidence 466666554 34433 68888877 99999999999999999999987 4444441 44443
Q ss_pred ccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCC
Q 001528 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1059)
Q Consensus 667 pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp 746 (1059)
+... -.+.++|.- .+ |++-.+.++-.++|+|++++..+++++ .+++++|||||
T Consensus 359 ~~~~-~~~~d~i~~-----------------------~i--~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~ 411 (771)
T TIGR01069 359 EHSE-IPYFEEIFA-----------------------DI--GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDEL 411 (771)
T ss_pred cccc-ccchhheee-----------------------ec--ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCC
Confidence 2100 011222210 00 111123344567999999999999988 78999999999
Q ss_pred CcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccc
Q 001528 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF 781 (1059)
Q Consensus 747 ~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~ 781 (1059)
++++|+..+..+....+..+. +|.++|++||..+.
T Consensus 412 g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 412 GAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 999999999987555554432 58899999999764
No 428
>PRK13695 putative NTPase; Provisional
Probab=99.10 E-value=1.1e-10 Score=121.04 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=97.0
Q ss_pred EEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhc
Q 001528 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1059)
Q Consensus 625 ~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~ 704 (1059)
+++|+|++|||||||++.+.+++.+ .| +.+ .+|+.|+..- ++ + ..|-... .. . ...-..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~-~~----~-~~~~~~~--~~----~----~~~~~~ 60 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVRE-GG----K-RIGFKII--DL----D----TGEEGI 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHh-cC----C-ccceEEE--Ec----C----CCCeEE
Confidence 5899999999999999999988765 46 222 4577664211 00 0 1111100 00 0 000011
Q ss_pred CCCC---CCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCC--CcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q 001528 705 FDHG---DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP--FSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1059)
Q Consensus 705 Lp~G---d~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp--~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l 779 (1059)
+... ....++.....+||+++-++.+++...++|+++++||| +..+|.+..+ .+++++ -.++++|+|+|.-
T Consensus 61 l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~-~l~~~~---~~~~~~i~v~h~~ 136 (174)
T PRK13695 61 LARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVK-AVEEVL---DSEKPVIATLHRR 136 (174)
T ss_pred ccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHH-HHHHHH---hCCCeEEEEECch
Confidence 1111 12233445567999999999999999999999999994 4455544333 233333 3589999999985
Q ss_pred cccccCCeEEEEeCCeEEEe
Q 001528 780 EFLSEVDRILVLEGGQITQS 799 (1059)
Q Consensus 780 ~~l~~aD~Iivl~~G~I~e~ 799 (1059)
..-+.+|+|..+.+|+|.+.
T Consensus 137 ~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hhHHHHHHHhccCCcEEEEE
Confidence 55567999999999999875
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=3e-10 Score=121.71 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=89.4
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhC-CCCCCccEEEEcC--eEEEEcccccccccCHHHHhccCCCCCH
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDK 686 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llG-e~~~~~G~I~v~g--~iayv~Q~pwi~~~TIreNIlfg~~~~~ 686 (1059)
.++.+|+++++++|++++|.||+|+||||+++.+.+ .+.+..|...... +++|.+|=-. .-..+|++.-|...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~--~~~~~d~~~~~~St-- 93 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLT--RMGASDSIQHGMST-- 93 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEE--EecCccccccccch--
Confidence 478999999999999999999999999999999999 7888888754332 3444433211 11122232222110
Q ss_pred HHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh
Q 001528 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766 (1059)
Q Consensus 687 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~ 766 (1059)
=..+-+|++-.=.-..+++++|||||.++.|+..+..+....+..+
T Consensus 94 ----------------------------------F~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l 139 (222)
T cd03287 94 ----------------------------------FMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYL 139 (222)
T ss_pred ----------------------------------HHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHH
Confidence 0112222222111235789999999988888777766554455444
Q ss_pred c--CCCEEEEEcCCccccc
Q 001528 767 L--EKKTVILVTHQVEFLS 783 (1059)
Q Consensus 767 l--~~kTvIlVTH~l~~l~ 783 (1059)
. ++.|+|++||..+...
T Consensus 140 ~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 140 LEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HhccCCeEEEEcccHHHHH
Confidence 3 3789999999988744
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.05 E-value=2.9e-10 Score=138.87 Aligned_cols=77 Identities=25% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHhhcC----CCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeC
Q 001528 718 LNLSGGQKQRIQLARAVYND----ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~----~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
..|||||||||+||||+... |+++|||||+++||..+...+. +.+..+.+++|+|+|||+++....||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 47899999999999999875 6999999999999999998875 567776689999999999999999999999988
Q ss_pred Ce
Q 001528 794 GQ 795 (1059)
Q Consensus 794 G~ 795 (1059)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.04 E-value=3.7e-10 Score=136.72 Aligned_cols=77 Identities=23% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHhhc----CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEeC
Q 001528 718 LNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1059)
Q Consensus 718 ~~LSGGQkQRIaLARAly~----~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~~ 793 (1059)
..|||||+|||+|||++.. +|+++|||||+++||..+...+. +.+..+.+++|+|+|||.++....||+++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEec
Confidence 3689999999999999997 58999999999999999999875 567776678999999999999999999999987
Q ss_pred Ce
Q 001528 794 GQ 795 (1059)
Q Consensus 794 G~ 795 (1059)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 53
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.04 E-value=3.5e-10 Score=141.63 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=92.9
Q ss_pred CcccceeeeecCCcEEEEEccCCCChhHHHHHHhCC-CCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHH
Q 001528 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1059)
Q Consensus 611 ~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe-~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y 689 (1059)
++-.|+++. +.+..++|+||+++||||+|+.+... +-...| .|||-+.- ..-++-|+|..
T Consensus 316 ~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G--------~~vpa~~~-~~i~~~~~i~~--------- 376 (782)
T PRK00409 316 VVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSG--------LPIPANEP-SEIPVFKEIFA--------- 376 (782)
T ss_pred eECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhC--------CCcccCCC-ccccccceEEE---------
Confidence 344455543 34578999999999999999988322 011111 03332210 01122233321
Q ss_pred HHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C
Q 001528 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E 768 (1059)
Q Consensus 690 ~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~ 768 (1059)
.-||...+..+-.++|+|++|++.++|++ .+|+++|||||++++|+..+..+....+..+. +
T Consensus 377 ----------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~ 439 (782)
T PRK00409 377 ----------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKR 439 (782)
T ss_pred ----------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 12344444456678999999999999999 89999999999999999999887655554432 5
Q ss_pred CCEEEEEcCCccccccC
Q 001528 769 KKTVILVTHQVEFLSEV 785 (1059)
Q Consensus 769 ~kTvIlVTH~l~~l~~a 785 (1059)
+.++|++||..+....+
T Consensus 440 ~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 440 GAKIIATTHYKELKALM 456 (782)
T ss_pred CCEEEEECChHHHHHHH
Confidence 78999999998875543
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.98 E-value=5e-10 Score=120.09 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcCCC-----cccCHHHHHHHHHHHHHH
Q 001528 723 GQKQRIQLARAVYNDADIYLFDDPF-----SAVDAHTAATLFNECVMA 765 (1059)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDdp~-----SAlD~~t~~~i~~~~i~~ 765 (1059)
-|++++.|||+++.+|+++++|||| ++||+.+.+++. +.+..
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~ 202 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQA 202 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHH-HHHHH
Confidence 3999999999999999999999999 999999999876 44544
No 434
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.4e-08 Score=121.06 Aligned_cols=121 Identities=15% Similarity=0.217 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
..+..++.++++++..+|..++.+.+.+..+++...++++++|+.++|||.|-+|.|+||.|+|.+.+-..++..+...+
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556666778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHH-HHHHHHHHHHHhccC
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVV---AIF-AMVAVRFVQVDQAFT 1058 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~---~ip-l~~~~~~~q~~y~~t 1058 (1059)
.+.++.++.++.++..+|.+..+ .+| ++++..++-+||+..
T Consensus 271 R~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rkl 315 (716)
T KOG0058|consen 271 RNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKL 315 (716)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998543 344 445555677777654
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.95 E-value=5.6e-10 Score=124.02 Aligned_cols=157 Identities=24% Similarity=0.364 Sum_probs=117.4
Q ss_pred cCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEE-----------cC-------------------eEEEEccccccc
Q 001528 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-----------YG-------------------SIAYVSQTSWIQ 670 (1059)
Q Consensus 621 ~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v-----------~g-------------------~iayv~Q~pwi~ 670 (1059)
++|+..+.||..|-||||-++.++|.++|.-|.-.- .| ..-||.|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 489999999999999999999999999998775421 11 256777777777
Q ss_pred ccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCccc
Q 001528 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1059)
Q Consensus 671 ~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAl 750 (1059)
.+++++++- +..+.+...++++.-+|..-++ .+ -..||||+-||.++|-+..+++|+|.+|||-|-|
T Consensus 178 k~~v~~~l~--~~~~r~~~~~~~~~~~L~~~~~-------re----~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 178 KGTVGSLLD--RKDERDNKEEVCDQLDLNNLLD-------RE----VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHH--HHhhcccHHHHHHHHHHhhHHH-------hh----hhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 888888763 3334445556665554443222 12 2469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc-CCCEEEEEcCCcccccc-CCeEEEE
Q 001528 751 DAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~-aD~Iivl 791 (1059)
|.+..-+- ...|+.++ .++-+|+|-|.++.+.. .|-|-.+
T Consensus 245 DVKQRLka-A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 245 DVKQRLKA-AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred hHHHhhhH-HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEE
Confidence 99887653 34455544 78999999999987654 3544444
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.87 E-value=5.3e-09 Score=124.98 Aligned_cols=108 Identities=29% Similarity=0.424 Sum_probs=89.3
Q ss_pred HHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcC--CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcC
Q 001528 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTH 777 (1059)
Q Consensus 701 di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~--~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH 777 (1059)
++...--||.|. ...-.+||||+.|||-||+.+.++ -=+|+||||..+|-+.--.++. +.++.+. .|.|+|+|-|
T Consensus 464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi-~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-ETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHH-HHHHHHHhcCCeEEEEec
Confidence 444444567765 333568999999999999999987 4589999999999988777765 4555543 6899999999
Q ss_pred CccccccCCeEEEE------eCCeEEEecChHHHHHcCc
Q 001528 778 QVEFLSEVDRILVL------EGGQITQSGNYQELLLAGT 810 (1059)
Q Consensus 778 ~l~~l~~aD~Iivl------~~G~I~e~Gt~~eL~~~~~ 810 (1059)
..+++..||+|+-| ..|+|+.+||++|++++..
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 99999999999998 5789999999999998863
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.86 E-value=2.3e-08 Score=108.31 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=82.3
Q ss_pred eecCCcEEEEEccCCCChhHH-HHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHh-ccCCCCCHHHHHHHHHHc
Q 001528 619 DIKWAQKIAVCGSVGAGKSSL-LYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKAC 696 (1059)
Q Consensus 619 ~i~~G~~vaIvG~sGsGKSTL-l~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNI-lfg~~~~~~~y~~vl~ac 696 (1059)
.+++|+.+.|.|++||||||| ++.+.+..++ | .++.|++.+-- ...+.++. .+|.+.++ +. .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g-----~~~~yi~~e~~--~~~~~~~~~~~g~~~~~--~~---~-- 83 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--G-----YSVSYVSTQLT--TTEFIKQMMSLGYDINK--KL---I-- 83 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--C-----CcEEEEeCCCC--HHHHHHHHHHhCCchHH--Hh---h--
Confidence 489999999999999999999 5777776654 2 23556653211 11222222 12322111 10 0
Q ss_pred CCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhc----CCCEEEEcCCCccc----CHHHHHHHHHHHHHHhc-
Q 001528 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAV----DAHTAATLFNECVMAAL- 767 (1059)
Q Consensus 697 ~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~----~~~IllLDdp~SAl----D~~t~~~i~~~~i~~~l- 767 (1059)
.|..-.+ +-...+|+++.++-.++|.+-. +|+++++|||++.+ |+...+.+. +.++.+.
T Consensus 84 ----------~~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~ 151 (230)
T PRK08533 84 ----------SGKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISS 151 (230)
T ss_pred ----------cCcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHh
Confidence 0110000 0012367777766666665544 69999999999999 666555554 4555443
Q ss_pred CCCEEEEEcCCccccc---------cCCeEEEEe
Q 001528 768 EKKTVILVTHQVEFLS---------EVDRILVLE 792 (1059)
Q Consensus 768 ~~kTvIlVTH~l~~l~---------~aD~Iivl~ 792 (1059)
+|+|+++ ||+..... -||-|+.|+
T Consensus 152 ~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 152 LNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 3666555 55544321 146677665
No 438
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.85 E-value=1.2e-08 Score=119.53 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=111.3
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe----EE-EEcccccccccCHHHHhccCCCC
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----IA-YVSQTSWIQSGSIRDNILYGKPM 684 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~----ia-yv~Q~pwi~~~TIreNIlfg~~~ 684 (1059)
..+++++ +++++|++++|+|++|+|||||++.|.|.+++..|.|.+.|. +. ++.. .+-...++..|.+-.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~--~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIER--DLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHh--hcChhhhcCeEEEEECC
Confidence 4579999 999999999999999999999999999999999887766431 11 0000 01112233444443333
Q ss_pred C---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE-EEEcC--CCcccCHHHHHHH
Q 001528 685 D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI-YLFDD--PFSAVDAHTAATL 758 (1059)
Q Consensus 685 ~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I-llLDd--p~SAlD~~t~~~i 758 (1059)
| -+++..+--++.+.+.+.. .|.+-.+==. +++ | .|||. .+| +.+.| .++++|+.....+
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r--~A~A~---rEisl~~ge~P~~~G~dp~~~~~l 288 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----R--VAMAQ---REIGLAVGEPPTTKGYTPSVFAIL 288 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----H--HHHHH---HHHHHhcCCCCccccCCHHHHHHH
Confidence 2 3666666666666666652 2333221110 000 1 11111 000 01234 3789999988765
Q ss_pred HHHHHHHhc---CCC-----EEEEEcCCccccccCCeEEEEeCCeEEEecChHH
Q 001528 759 FNECVMAAL---EKK-----TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 759 ~~~~i~~~l---~~k-----TvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
. +.+.++- +|. |+++.+|+++. +-||++.++.||+|+.+|+..+
T Consensus 289 ~-~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 289 P-KLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred H-HHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 4 4454432 575 99999999985 8899999999999999887544
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.82 E-value=3.7e-08 Score=102.98 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=89.5
Q ss_pred EEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhcC
Q 001528 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705 (1059)
Q Consensus 626 vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~L 705 (1059)
+.|.|++|+|||+|..-++-+.... | .++.|++= +.+.+.+.+-++..+.+ ++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g-----~~v~~~s~-----------------e~~~~~~~~~~~~~g~~--~~~l 56 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-G-----EPGLYVTL-----------------EESPEELIENAESLGWD--LERL 56 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-C-----CcEEEEEC-----------------CCCHHHHHHHHHHcCCC--hHHH
Confidence 6799999999999998765544322 2 23445541 12233333333333332 2222
Q ss_pred -CCCCCccccCCCCCCChHHHH-----HHHHHHH-hhcCCCEEEEcCCCcccC---HHHHHHHHHHHHHHh-cCCCEEEE
Q 001528 706 -DHGDLTEIGQRGLNLSGGQKQ-----RIQLARA-VYNDADIYLFDDPFSAVD---AHTAATLFNECVMAA-LEKKTVIL 774 (1059)
Q Consensus 706 -p~Gd~T~IGe~G~~LSGGQkQ-----RIaLARA-ly~~~~IllLDdp~SAlD---~~t~~~i~~~~i~~~-l~~kTvIl 774 (1059)
..|....+......+|+||+| +..+.++ .-.+|+++++|+|++.+| ....+.+ .+.+..+ ..|.|+|+
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~ 135 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLL 135 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEE
Confidence 234445555666788999998 3444444 556899999999999999 5555544 3344332 25889999
Q ss_pred EcCCccc---------c-ccCCeEEEEe
Q 001528 775 VTHQVEF---------L-SEVDRILVLE 792 (1059)
Q Consensus 775 VTH~l~~---------l-~~aD~Iivl~ 792 (1059)
++|.... + .-||.|+.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998764 3 4489999886
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=98.81 E-value=6.5e-09 Score=134.56 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=64.8
Q ss_pred CCCCCChHHHHHHHH------HHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC---C-CEEEEEcCCccccccC
Q 001528 716 RGLNLSGGQKQRIQL------ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE---K-KTVILVTHQVEFLSEV 785 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaL------ARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~---~-kTvIlVTH~l~~l~~a 785 (1059)
.+..||||||+|++| ||+++++|++++|||||+++|......+. +.+...++ + .|+|+|||+.+++..|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~-~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLK-DIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 356899999999975 59999999999999999999999988865 45543322 2 5899999999999999
Q ss_pred CeEEEEe
Q 001528 786 DRILVLE 792 (1059)
Q Consensus 786 D~Iivl~ 792 (1059)
|+|+.++
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999996
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.79 E-value=4.1e-09 Score=119.15 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=96.2
Q ss_pred eeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHH
Q 001528 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKA 695 (1059)
Q Consensus 616 inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~a 695 (1059)
+++.+++|+.++|+|++|||||||+++|+|++++..|.+.+....-+-..+ .|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~---------~~~----------------- 190 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPH---------PNY----------------- 190 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCC---------CCE-----------------
Confidence 557788999999999999999999999999999988866542110000000 000
Q ss_pred cCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCC-CEEEE
Q 001528 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVIL 774 (1059)
Q Consensus 696 c~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~-kTvIl 774 (1059)
+++... +. +.| .++-...=.+++++..+||++++|||.+ .+. + +.++....| .+++.
T Consensus 191 ~~l~~~----~~-------~~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e~----~-~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 191 VHLFYS----KG-------GQG---LAKVTPKDLLQSCLRMRPDRIILGELRG---DEA----F-DFIRAVNTGHPGSIT 248 (308)
T ss_pred EEEEec----CC-------CCC---cCccCHHHHHHHHhcCCCCeEEEeccCC---HHH----H-HHHHHHhcCCCeEEE
Confidence 000000 00 001 1222233467888999999999999997 222 2 234443344 46699
Q ss_pred EcCCccccccCCeEEEEeCCeEEEecChHHHH
Q 001528 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1059)
Q Consensus 775 VTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL~ 806 (1059)
++|..+.....|++..|..|++...|...|.+
T Consensus 249 T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 249 TLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 99999987778999999999999989888776
No 442
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.75 E-value=4.3e-07 Score=98.95 Aligned_cols=97 Identities=12% Similarity=0.380 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1059)
Q Consensus 954 ~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~ 1033 (1059)
.........+.+..+++++++++++++.|.+|||+++.|+++||+++|++.+++.+...+..++.....+++.++++...
T Consensus 60 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 139 (275)
T PF00664_consen 60 IYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFI 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccccc
Confidence 33444557788999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001528 1034 TWQVLVVAIFAMVAVRF 1050 (1059)
Q Consensus 1034 ~p~~~~~~ipl~~~~~~ 1050 (1059)
.|.+.++.+....++.+
T Consensus 140 ~~~l~l~~l~~~~~~~~ 156 (275)
T PF00664_consen 140 SWKLALILLIILPLLFL 156 (275)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHh
Confidence 89887766544444433
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=98.73 E-value=1.9e-08 Score=130.24 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=64.5
Q ss_pred CCCCChHHHH------HHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEE
Q 001528 717 GLNLSGGQKQ------RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRIL 789 (1059)
Q Consensus 717 G~~LSGGQkQ------RIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Ii 789 (1059)
...||||||| |++|||++..+|+++||||||+++|++...++. +.+.... .+.|+|+|||+.++...||+++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~-~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLV-DIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 3579999999 566667899999999999999999999999876 4565543 4679999999999888999999
Q ss_pred EEe
Q 001528 790 VLE 792 (1059)
Q Consensus 790 vl~ 792 (1059)
+|+
T Consensus 865 ~l~ 867 (880)
T PRK03918 865 RVS 867 (880)
T ss_pred EEE
Confidence 997
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.70 E-value=2.2e-08 Score=105.99 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=79.0
Q ss_pred EEEEEccCCCChhHHHHHHhCCCCCC-ccEEEE-cCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHH
Q 001528 625 KIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNL-YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1059)
Q Consensus 625 ~vaIvG~sGsGKSTLl~~llGe~~~~-~G~I~v-~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di 702 (1059)
++.|+||+||||||+++++++++++. .|.|.. ...+-|..+.. .| .+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~---------------------------~~----~i 51 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK---------------------------RS----LI 51 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc---------------------------cc----ee
Confidence 78999999999999999999999754 455432 22122111100 00 00
Q ss_pred hcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCcccc
Q 001528 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1059)
Q Consensus 703 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l 782 (1059)
.+.++|.+..+++. ++++|+..+||++++||+. |.++... +++....|.+++.++|..+..
T Consensus 52 ------~q~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~----~l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 52 ------NQREVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL----ALTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ------eecccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH----HHHHHHcCCEEEEEecCCcHH
Confidence 11234443333322 5899999999999999996 6665443 334445789999999999988
Q ss_pred ccCCeEEEEe
Q 001528 783 SEVDRILVLE 792 (1059)
Q Consensus 783 ~~aD~Iivl~ 792 (1059)
...|+++.|-
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 8889987774
No 445
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.69 E-value=5.3e-07 Score=113.75 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccC--CccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001528 906 VLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980 (1059)
Q Consensus 906 ~~~~~~~~~~~~~~~~Wl~~w~~~--~~~~~---~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlr 980 (1059)
+++.++...+.+...++.....+. ++.+. ...+.+++++.++..++.+++..++.+.+.+...+++++++++++|
T Consensus 167 ~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~ 246 (711)
T TIGR00958 167 FVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLR 246 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344445555555555443321 11111 1234445555666667777788888888999999999999999999
Q ss_pred CccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001528 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 981 aPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~ 1040 (1059)
.|++||+++++|.++||+++|++.+++.+...+..++..++.+++.++++....|++.++
T Consensus 247 ~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 247 QDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred CCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999998888888888887544
No 446
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.66 E-value=4.1e-08 Score=105.02 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=84.9
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCc-cEEEEcC---eEEEEccccccc-ccCHHHHhccCCCC
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYG---SIAYVSQTSWIQ-SGSIRDNILYGKPM 684 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~-G~I~v~g---~iayv~Q~pwi~-~~TIreNIlfg~~~ 684 (1059)
.++-+|+++++++|++++|.||+|+||||+++.+.+..-..+ |. .+.. ++.++. -|| .-.-+||+..|...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~vpa~~~~i~~~~---~i~~~~~~~d~~~~~~St 92 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DVPAKSMRLSLVD---RIFTRIGARDDIMKGEST 92 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-ccCccccEecccc---EEEEecCcccccccCcch
Confidence 578899999999999999999999999999998865422111 11 0111 122211 111 11333444333221
Q ss_pred CHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHH
Q 001528 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1059)
Q Consensus 685 ~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~ 764 (1059)
=. .+-+|++-.=....+++++|||||.++.|+..+..+....+.
T Consensus 93 F~------------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~ 136 (218)
T cd03286 93 FM------------------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLE 136 (218)
T ss_pred HH------------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHH
Confidence 00 122222211111257899999999999999999888765565
Q ss_pred HhcC--CCEEEEEcCCcccccc
Q 001528 765 AALE--KKTVILVTHQVEFLSE 784 (1059)
Q Consensus 765 ~~l~--~kTvIlVTH~l~~l~~ 784 (1059)
.+.+ +.++|++||..+....
T Consensus 137 ~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 137 YLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHhcCCcEEEEeccHHHHHH
Confidence 5544 7999999999887544
No 447
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=4.5e-07 Score=88.60 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=84.6
Q ss_pred CCcEEEEEccCCCChhHHHHHHhCCCCCCc-cEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCch
Q 001528 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700 (1059)
Q Consensus 622 ~G~~vaIvG~sGsGKSTLl~~llGe~~~~~-G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~ 700 (1059)
+|..+.|+||+||||||+++.+.+.+.... +-+.++. +..........+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------EDILEEVLDQLL----------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-------EEccccCHHHHH-----------------------
Confidence 477899999999999999999999988765 3333332 111111111111
Q ss_pred HHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHH------HHHHHhcCCCEEEE
Q 001528 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN------ECVMAALEKKTVIL 774 (1059)
Q Consensus 701 di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~------~~i~~~l~~kTvIl 774 (1059)
....++......+++.++..+++|-+.+++++++||+....+......... ........+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 334456677889999999999999999999999999999999988876542 11223346778888
Q ss_pred EcCC
Q 001528 775 VTHQ 778 (1059)
Q Consensus 775 VTH~ 778 (1059)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8884
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.66 E-value=1.3e-07 Score=119.95 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=54.5
Q ss_pred hhcCCCEEEEcCCCccc-CHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccc----------ccCCeEEEEeCCeEEEecC
Q 001528 734 VYNDADIYLFDDPFSAV-DAHTAATLFNECVMAA-LEKKTVILVTHQVEFL----------SEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 734 ly~~~~IllLDdp~SAl-D~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l----------~~aD~Iivl~~G~I~e~Gt 801 (1059)
+..+|.++++|||.++| |+...+.+ .+.++.. .+|.++|++||+++.+ ..||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 46899999999999999 57776665 4556543 4688999999999775 4799999999999877764
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.65 E-value=2.4e-08 Score=133.44 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=66.4
Q ss_pred CCCCCChHHHHHHHHHHHh----hcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEE
Q 001528 716 RGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1059)
Q Consensus 716 ~G~~LSGGQkQRIaLARAl----y~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl 791 (1059)
+...||||||||++||||+ +++|++||||||++++|......+. +++....++.|+|+|||+.+.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFA-NLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHH-HHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4568999999999999998 5788999999999999999998875 5777766778999999999999999998765
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.65 E-value=1.8e-07 Score=94.74 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=79.5
Q ss_pred EEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCCchHHhc
Q 001528 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1059)
Q Consensus 625 ~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L~~di~~ 704 (1059)
.++|+|++|+||||++..+++...+.. +.+.|++++.-.- ..+++. .. .. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~------~~v~~~~~e~~~~--~~~~~~---------------~~--~~--~~~ 53 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG------GKVVYVDIEEEIE--ELTERL---------------IG--ES--LKG 53 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC------CEEEEEECCcchH--HHHHHH---------------hh--hh--hcc
Confidence 368999999999999999999987743 4566776643311 112221 00 00 000
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHH----------HHHHHHHHHHHHhc-CCCEEE
Q 001528 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH----------TAATLFNECVMAAL-EKKTVI 773 (1059)
Q Consensus 705 Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~----------t~~~i~~~~i~~~l-~~kTvI 773 (1059)
.+ +....+......-+.++.+++..+++...+++++++||+++-+|.. ..+. +.+...... .+.|+|
T Consensus 54 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~vv 131 (165)
T cd01120 54 AL-DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEE-LRELLERARKGGVTVI 131 (165)
T ss_pred cc-ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHhcCCceEE
Confidence 01 1112222333344566777889999999999999999999665543 3333 333332222 388999
Q ss_pred EEcCCcccc
Q 001528 774 LVTHQVEFL 782 (1059)
Q Consensus 774 lVTH~l~~l 782 (1059)
+++|.....
T Consensus 132 ~~~~~~~~~ 140 (165)
T cd01120 132 FTLQVPSGD 140 (165)
T ss_pred EEEecCCcc
Confidence 999987543
No 451
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=5.4e-08 Score=127.50 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCChHHHHHHHHHHHhhc----------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccc-c
Q 001528 717 GLNLSGGQKQRIQLARAVYN----------DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-E 784 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~----------~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~-~ 784 (1059)
-.+||||+++|++||+|+.. +|++++|||||++||+++...++ +++..+. .|+||++|||..+... .
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAI-GILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 46899999999999999985 79999999999999999998876 4665542 6899999999999864 4
Q ss_pred CCeEEEEeCC
Q 001528 785 VDRILVLEGG 794 (1059)
Q Consensus 785 aD~Iivl~~G 794 (1059)
+|+|.|+++|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 7999999754
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=1.8e-07 Score=108.64 Aligned_cols=167 Identities=18% Similarity=0.181 Sum_probs=114.1
Q ss_pred EEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCH
Q 001528 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1059)
Q Consensus 595 i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TI 674 (1059)
++.++++-.+.. ...++++ .+++.+||+++|+|++|+|||||++.|.|..++..|.| +++.|.. -++
T Consensus 131 ~~r~~i~~~l~T--GiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI------~~iGerg----~ev 197 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI------SLVGERG----REV 197 (432)
T ss_pred hheechhhccCC--CCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE------EeCCCCc----ccH
Confidence 344444444432 2456776 49999999999999999999999999999999887754 3444444 344
Q ss_pred HHHhccCCCCCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhh-------cCCCEEEEcCCC
Q 001528 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY-------NDADIYLFDDPF 747 (1059)
Q Consensus 675 reNIlfg~~~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly-------~~~~IllLDdp~ 747 (1059)
+|.+. +.+..-++. .|.+=..-.+-|.|+|+|++.+.+.. .++-++++||+|
T Consensus 198 ~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 198 KDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 44431 122221221 23333455778999999999988877 677888899999
Q ss_pred cccCHHHHHHHHHHHHHHhc-CCCEEEEEcCCccccccCCeEEEEeCCeEEEecC
Q 001528 748 SAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1059)
Q Consensus 748 SAlD~~t~~~i~~~~i~~~l-~~kTvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt 801 (1059)
...|+.- .| ...+.+.- .|.|..+.||..+.+.+|-+ .++|.|...++
T Consensus 257 r~a~A~r--ei-sl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 257 RFADARR--SV-DIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHHH--HH-HHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 9999973 33 22333322 57888888996666777765 37898887655
No 453
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.54 E-value=5.3e-08 Score=112.54 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=43.1
Q ss_pred CcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCcc-EEEEcCe
Q 001528 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG-TVNLYGS 659 (1059)
Q Consensus 611 ~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G-~I~v~g~ 659 (1059)
.+|++||+++++||+++|+|||||||||||+ .|..+|.+| +|.++|.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 5899999999999999999999999999999 677778888 7999884
No 454
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.51 E-value=5.6e-08 Score=102.84 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=79.9
Q ss_pred EEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCH--HHHhc----cCCCCCHHHHHHHHHHcCC
Q 001528 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI--RDNIL----YGKPMDKARYDKAIKACAL 698 (1059)
Q Consensus 625 ~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TI--reNIl----fg~~~~~~~y~~vl~ac~L 698 (1059)
+++|+|+.|||||||++.+++++++..|...+...+++..|.+|+.+.++ +||+. -|.+....|++.+...|+|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999999876665555566777777778776653 45553 2456667788888889999
Q ss_pred chHHhcCCCCCCccccCCCCCCChHH
Q 001528 699 DKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1059)
Q Consensus 699 ~~di~~Lp~Gd~T~IGe~G~~LSGGQ 724 (1059)
.+++..+|++|.+.|+..|.++|.--
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCccccc
Confidence 99988899999999999998776655
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.49 E-value=1.7e-07 Score=125.17 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCCChHHHHHHHHHHHhh----cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEEEEe
Q 001528 717 GLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly----~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Iivl~ 792 (1059)
...||||||++++||+++. .+||+|+||||+++||+.....+. +.+....++.++|+|||+...+..||+++.+.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVA-KLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHH-HHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 3479999999999999996 588999999999999999888764 56766667789999999999999999998774
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.47 E-value=1.8e-06 Score=93.91 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=83.4
Q ss_pred eecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHh-ccCCCCCHHHHHHHHHHcC
Q 001528 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACA 697 (1059)
Q Consensus 619 ~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNI-lfg~~~~~~~y~~vl~ac~ 697 (1059)
-+|+|+.+.|.|++|||||+|...++-+.-. + .+++.|+..+--. ..+.+|. .||-+.++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-----g~~~~y~~~e~~~--~~~~~~~~~~g~~~~~~~--------- 83 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-----GKKVYVITTENTS--KSYLKQMESVKIDISDFF--------- 83 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-----CCEEEEEEcCCCH--HHHHHHHHHCCCChhHHH---------
Confidence 6899999999999999999999988643222 1 2367777763221 1222222 2332221110
Q ss_pred CchHHhcCCCCCCcccc---CCCCCCChHHHHHHHHHHHhhc--CCCEEEEcCCCcccC---HHHHHHHHHHHHHH-hcC
Q 001528 698 LDKDINNFDHGDLTEIG---QRGLNLSGGQKQRIQLARAVYN--DADIYLFDDPFSAVD---AHTAATLFNECVMA-ALE 768 (1059)
Q Consensus 698 L~~di~~Lp~Gd~T~IG---e~G~~LSGGQkQRIaLARAly~--~~~IllLDdp~SAlD---~~t~~~i~~~~i~~-~l~ 768 (1059)
..|....+. ++-...|.++++.+...+.... +|+++++|+|++.+| .+.-..+++ .+.. ..+
T Consensus 84 --------~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~ 154 (234)
T PRK06067 84 --------LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDL 154 (234)
T ss_pred --------hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhC
Confidence 111111110 1123457789999999999997 999999999996554 333233322 2322 235
Q ss_pred CCEEEEEcCCccc
Q 001528 769 KKTVILVTHQVEF 781 (1059)
Q Consensus 769 ~kTvIlVTH~l~~ 781 (1059)
++|+++++|....
T Consensus 155 g~tvllt~~~~~~ 167 (234)
T PRK06067 155 GKTILITLHPYAF 167 (234)
T ss_pred CCEEEEEecCCcC
Confidence 8899999997654
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.47 E-value=4.2e-07 Score=103.74 Aligned_cols=87 Identities=22% Similarity=0.147 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCccc-----------ceeeeecCCcE
Q 001528 557 SIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR-----------GVNLDIKWAQK 625 (1059)
Q Consensus 557 ~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~sf~~~~~~~~~~L~-----------~inl~i~~G~~ 625 (1059)
...+++..+.+|+.+.++.+..+.. ++....+.+.|+|++|.||.+ +++|+ |+++.|.+||.
T Consensus 98 ~g~~R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~ 170 (415)
T TIGR00767 98 EGQIRSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQR 170 (415)
T ss_pred EEEEeccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCE
Confidence 3334566788999999876554321 112234679999999999853 47896 99999999999
Q ss_pred EEEEccCCCChhHHHHHHhCCCCCC
Q 001528 626 IAVCGSVGAGKSSLLYAILGEIPKI 650 (1059)
Q Consensus 626 vaIvG~sGsGKSTLl~~llGe~~~~ 650 (1059)
++||||+|||||||++.|...+...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999999988654
No 458
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.46 E-value=2e-07 Score=101.32 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=51.4
Q ss_pred CCChHHHHHHHHHHHhhcCC---CEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CCEEEEEcCCcccc
Q 001528 719 NLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL 782 (1059)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~---~IllLDdp~SAlD~~t~~~i~~~~i~~~l~-~kTvIlVTH~l~~l 782 (1059)
.+|.|+||.+.|+-+++... .++++|||-++|+++..++++ +.+....+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999998877 899999999999999999987 56666555 88999999998765
No 459
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.46 E-value=8.3e-06 Score=100.67 Aligned_cols=107 Identities=13% Similarity=0.349 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
.+.++++.++..++.+++..+....+.+....++..+++++++.|.++|+..+.|+++||+++|++.+++.+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777778888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVVAIFA 1044 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~~ipl 1044 (1059)
..++.++..++++....|++.++.+.+
T Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 137 RETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999888888888876654433
No 460
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.42 E-value=1.1e-05 Score=99.90 Aligned_cols=98 Identities=17% Similarity=0.336 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHH
Q 001528 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1059)
Q Consensus 942 ~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~ 1021 (1059)
+++.++..++.+++..+....+.+.+.+++.++++++++.|++||+..+.|+++||+++|++.++......+..++..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~ 151 (592)
T PRK10790 72 VGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAA 151 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556667777777888889999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 001528 1022 ELLAIIGIMTFVTWQVLV 1039 (1059)
Q Consensus 1022 ~~l~~~~vi~~~~p~~~~ 1039 (1059)
.+++.++++....|++.+
T Consensus 152 ~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 152 LIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888777777777776543
No 461
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.38 E-value=2e-05 Score=96.89 Aligned_cols=100 Identities=13% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHH
Q 001528 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1059)
Q Consensus 940 vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1019 (1059)
.++++.++..++.++..++....+.+..+++..++++++++.|++||++.+.|++++|+++|++.+++.+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 34555556666677777777888899999999999999999999999999999999999999999998774 46666677
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 001528 1020 GTELLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 1020 ~~~~l~~~~vi~~~~p~~~~~ 1040 (1059)
++.+++.+++++...|.+.++
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 777777777777777777554
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.36 E-value=7e-07 Score=115.74 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=63.4
Q ss_pred CCCChHHHH------HHHHHHHhhcC------CCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CC-CEEEEEcCCccccc
Q 001528 718 LNLSGGQKQ------RIQLARAVYND------ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK-KTVILVTHQVEFLS 783 (1059)
Q Consensus 718 ~~LSGGQkQ------RIaLARAly~~------~~IllLDdp~SAlD~~t~~~i~~~~i~~~l-~~-kTvIlVTH~l~~l~ 783 (1059)
..||||||| |+++||++..+ ++++||||||+++|+.....+. +.+..+. .| .++|+|||+.+++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHH
Confidence 489999999 99999999863 3679999999999999988875 4554443 24 48999999999999
Q ss_pred cCCeEEEEeCC
Q 001528 784 EVDRILVLEGG 794 (1059)
Q Consensus 784 ~aD~Iivl~~G 794 (1059)
.||+++.|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999644
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.36 E-value=6.3e-07 Score=102.96 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=81.9
Q ss_pred ecCCcEEEEEccCCCChhHHHHHHhCCCCCC-ccEEEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHHHHHHcCC
Q 001528 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698 (1059)
Q Consensus 620 i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~-~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~vl~ac~L 698 (1059)
.+++.++.|+||+||||||+++++++++++. +|.|.. +.+ .+-+..+.. .|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t------iEd-----------p~E~~~~~~---------~~-- 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT------IED-----------PIEYVHRNK---------RS-- 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE------EcC-----------ChhhhccCc---------cc--
Confidence 4678999999999999999999999988753 455432 211 110000000 00
Q ss_pred chHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCC
Q 001528 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778 (1059)
Q Consensus 699 ~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~ 778 (1059)
.+ .+.++|..+.+ -.=++++|+-++||++++||+. |.++....+ .....|.+++.+.|.
T Consensus 171 --~i------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l----~aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 171 --LI------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELAL----TAAETGHLVFGTLHT 229 (343)
T ss_pred --eE------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHH----HHHHcCCcEEEEEcC
Confidence 00 12234433322 3345889999999999999997 888876544 334568899999999
Q ss_pred ccccccCCeEEEE
Q 001528 779 VEFLSEVDRILVL 791 (1059)
Q Consensus 779 l~~l~~aD~Iivl 791 (1059)
.+.....|+++-|
T Consensus 230 ~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 230 NSAAQTIERIIDV 242 (343)
T ss_pred CCHHHHHHHHHHh
Confidence 8887777877655
No 464
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.35 E-value=6.1e-07 Score=117.13 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCCCChHHHHHHHHHHHhhc--------CCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCCEEEEEcCCccccccC-C
Q 001528 717 GLNLSGGQKQRIQLARAVYN--------DADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEV-D 786 (1059)
Q Consensus 717 G~~LSGGQkQRIaLARAly~--------~~~IllLDdp~SAlD~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~a-D 786 (1059)
-.+|||||++|++||||+.. +|++++|||||++||+.+-..++ +.+..+ -.|+||++|||-....... .
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 46899999999999999995 89999999999999999999876 567554 3689999999966665554 4
Q ss_pred eEEEEeC
Q 001528 787 RILVLEG 793 (1059)
Q Consensus 787 ~Iivl~~ 793 (1059)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 5555543
No 465
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.35 E-value=1.9e-05 Score=96.82 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHH
Q 001528 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1059)
Q Consensus 944 l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~ 1023 (1059)
+.++..++.+++.++....+.+...++..++++++++.|++||+..+.|.++||+++|++.+...+. .+..++...+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~ 135 (547)
T PRK10522 57 LLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILT 135 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333344455666777778889999999999999999999999999999999999999999987554 456667777777
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 001528 1024 LAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1024 l~~~~vi~~~~p~~~~~~ 1041 (1059)
++.++++....|.+.+++
T Consensus 136 i~~~~~l~~~~~~l~li~ 153 (547)
T PRK10522 136 LGSAAYLAWLSPKMLLVT 153 (547)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 777777777777776553
No 466
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.32 E-value=2.8e-05 Score=95.11 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHH
Q 001528 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1059)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~ 1025 (1059)
++..++.++...+....+.+...++..++++++++.|.+||++.+.|+++||+++|++.+++.+...+..++..++.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~ 143 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA 143 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666677888889999999999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHhHHHHHHH
Q 001528 1026 IIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1026 ~~~vi~~~~p~~~~~~ 1041 (1059)
.++++....|.+.+++
T Consensus 144 ~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 144 AVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 8888888888776554
No 467
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.31 E-value=2.9e-05 Score=96.17 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
..+++++.++..++.+++..+....+.+....+..++++++++.|++||+..++|.++||+++|++.+++.+...+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444445556666677777777888899999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLV 1039 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~ 1039 (1059)
..++..++.++++....|++.+
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777777776644
No 468
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.31 E-value=4e-06 Score=95.86 Aligned_cols=157 Identities=25% Similarity=0.292 Sum_probs=111.1
Q ss_pred eeecCCcEEEEEccCCCChhHHHHHH-hCCCCCCccEEEEcCeEEEEcc-cc-cccccCHHHHhccCCCCCHHHHHHHHH
Q 001528 618 LDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQ-TS-WIQSGSIRDNILYGKPMDKARYDKAIK 694 (1059)
Q Consensus 618 l~i~~G~~vaIvG~sGsGKSTLl~~l-lGe~~~~~G~I~v~g~iayv~Q-~p-wi~~~TIreNIlfg~~~~~~~y~~vl~ 694 (1059)
+-||+| ++.|||.-=-||||||+|| .|-|++..| ||+=-.|.- ++ .+- .+=-+.++
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~VVT~~~avkir----------------AEDGR~V~ 298 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFVVTDPDAVKIR----------------AEDGRSVE 298 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEEEECCCceEEE----------------ecCCceEe
Confidence 678999 9999999999999999999 588887766 332111110 00 000 00012355
Q ss_pred HcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCccc-----CHHHHHHH---------HH
Q 001528 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-----DAHTAATL---------FN 760 (1059)
Q Consensus 695 ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAl-----D~~t~~~i---------~~ 760 (1059)
.+.+..+|..||.|.+|. -=--.|=||---|=-++..|+-..++++|+||=|||- |....+-+ |-
T Consensus 299 ~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfi 377 (448)
T PF09818_consen 299 GVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFI 377 (448)
T ss_pred CccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHH
Confidence 677899999999999997 2334577999999999999999999999999999997 44444433 00
Q ss_pred HHHHHh--cCCCEEEEEcCCc-cccccCCeEEEEeCCeE
Q 001528 761 ECVMAA--LEKKTVILVTHQV-EFLSEVDRILVLEGGQI 796 (1059)
Q Consensus 761 ~~i~~~--l~~kTvIlVTH~l-~~l~~aD~Iivl~~G~I 796 (1059)
+-++.+ -.|-++|+|+-.. .++..||+|++|++=+.
T Consensus 378 drvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 378 DRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 111222 1466777777655 67999999999998654
No 469
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.30 E-value=2.7e-05 Score=98.52 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHhHHHHHhhhccC--CccCc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFAA 960 (1059)
Q Consensus 886 ~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w~~~--~~~~~---~~~l~vY~~l~~~~~~~~~~~~~~~~ 960 (1059)
+.-++.|++....+. ...+++.++..++.++..+++....+. ++... ..+...++++.++..++.+++..+..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665322222 222333333444555556666554432 11111 11222333444555666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001528 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1059)
Q Consensus 961 ~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~ 1039 (1059)
..+.+...++..++++++++.|++||++.++|.++||++ |.+.+-+.+...+...+...+.++..++++....|++.+
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 889999999999999999999999999999999999998 777766655554444444555555555555556666543
No 470
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.28 E-value=4.3e-05 Score=94.48 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001528 959 AAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVL 1038 (1059)
Q Consensus 959 ~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~ 1038 (1059)
....+.+..+.+.+++++++++.|++||+.+++|.+++|+++|++.+.......+..++..++.++..++++....|.+.
T Consensus 80 ~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 80 ADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667999999999999999999999999999999999988777777777777777777677777777776
Q ss_pred HHHH
Q 001528 1039 VVAI 1042 (1059)
Q Consensus 1039 ~~~i 1042 (1059)
++++
T Consensus 160 li~l 163 (585)
T TIGR01192 160 IVLM 163 (585)
T ss_pred HHHH
Confidence 5443
No 471
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.28 E-value=3.5e-05 Score=97.68 Aligned_cols=103 Identities=14% Similarity=0.189 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
...++++.++..++.+++..+....+.+...++..++++++++.|++||+..++|.++||++.| +.+.+.+...+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~ 275 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTA 275 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHH
Confidence 3344445555667777888888889999999999999999999999999999999999999998 567777776777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~~ 1041 (1059)
..++.++..++++....|++.+++
T Consensus 276 ~~~~~~~~~~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 276 LDAVMLVFYALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777765543
No 472
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=1.3e-06 Score=100.83 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHHhhc---------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccc
Q 001528 719 NLSGGQKQRIQLARAVYN---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1059)
Q Consensus 719 ~LSGGQkQRIaLARAly~---------~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~ 783 (1059)
.+|+||++++.||.++.+ +|+|+|||||+|.||++..+.+++ .+... |.+++++||+.+.++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~-~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAE-LLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHH-HHhhc--CCEEEEEecChhhcc
Confidence 589999999999999999 999999999999999999888764 44332 679999999987654
No 473
>PRK12369 putative transporter; Reviewed
Probab=98.23 E-value=0.012 Score=66.96 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001528 338 CFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVV 416 (1059)
Q Consensus 338 ~~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~l 416 (1059)
..+...+++.+.|..|+....++-+..... . +.+ | .+++.|++++.+... ....+...++.++.-+.+||.+-
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~~~~~-i-DNP--D--QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS 156 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRNKRDN-I-EGS--S--QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLS 156 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CCc--c--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445667899999999999999999875421 1 111 1 588999998766433 34455566666666666777643
Q ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHhhHHHHHHhchH-HHHHH
Q 001528 417 GLG------------ALPGLVLFLICGLLNVPFAKILQKC-QSEFMIAQDERLRSTS--EILNNMKIIKLQSWE-EKFKS 480 (1059)
Q Consensus 417 g~~------------~l~gl~~~~~~~~l~~~~~~~~~~~-~~~~~~~~d~r~~~~~--E~L~~ik~IK~~~wE-~~f~~ 480 (1059)
|.. ..+.++..++...+...+++.+.+. .+++...-|=|-.++- |--++ | -| +..++
T Consensus 157 ~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~ 229 (326)
T PRK12369 157 DGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIE 229 (326)
T ss_pred CCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHH
Confidence 321 1111222222222333344433322 2222222343443321 11111 1 22 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 481 LIESRREKEFKWLSEAQLRKAYGTVIYW---MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1059)
Q Consensus 481 ~i~~~R~~El~~l~~~~~~~~~~~~~~~---~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~ 557 (1059)
+..+.++.-.+..+.......+...... ..|.++.+ -.+. .++++.|.+..+...|+.+...++.+.+...
T Consensus 230 ~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~a-----P~y~-sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~ 303 (326)
T PRK12369 230 LFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMA-----PGLF-AGVITLGVLMQISNAFSQVRSSFSVFIRNWT 303 (326)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHH-hCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333332222 23333221 1122 3689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 001528 558 IMIQVKVSFDRINAFLL 574 (1059)
Q Consensus 558 ~~~~a~vs~~Ri~~fL~ 574 (1059)
.+.+-..+.+|+.+|.+
T Consensus 304 ~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 304 TITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999964
No 474
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.23 E-value=5.8e-05 Score=92.33 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHH
Q 001528 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1059)
Q Consensus 937 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1016 (1059)
+.+.+++++++..++.+++.++....+.+...+++.++++++++.|.+||+..++|+++||+++|++.+++.+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455556666667777788888888899999999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 001528 1017 AASGTELLAIIGIMTFVTWQVLV 1039 (1059)
Q Consensus 1017 ~~~~~~~l~~~~vi~~~~p~~~~ 1039 (1059)
+...+.++..++++....|++.+
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~ 148 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 77777777777777777776543
No 475
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.23 E-value=6.8e-05 Score=92.92 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCCccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 001528 905 GVLAQSGFVGLQAAATYWLAYAIQIPKITSG--ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1059)
Q Consensus 905 ~~~~~~~~~~~~~~~~~Wl~~w~~~~~~~~~--~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraP 982 (1059)
++++.++..++.++..+++..-.+.-..... .+..++.+++++..+..++..........+....+-.++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444445555666666666544432111111 12223333333332222223333333334444455568999999999
Q ss_pred cccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001528 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 983 m~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~~~vi~~~~p~~~~~~ 1041 (1059)
.++|+..+.|++++|+++|++.+.......+..++...+..++.++++....|++.++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 162 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVL 162 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877766666666666666666666666777665443
No 476
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.22 E-value=5.9e-05 Score=95.27 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHH
Q 001528 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAA 1018 (1059)
Q Consensus 939 ~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~ 1018 (1059)
..++++.++..++.+++..+....+.+....+..++++++++.|++||+..+.|.++||+ +|++.+.+.+...+..++.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~ 261 (694)
T TIGR01846 183 LAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVL 261 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 334455555667777888888889999999999999999999999999999999999999 6999999888766666665
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 001528 1019 SGTELLAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1019 ~~~~~l~~~~vi~~~~p~~~~~~ 1041 (1059)
.++.++..++++....|++.+++
T Consensus 262 ~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 262 DLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666777765443
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.22 E-value=1.4e-06 Score=100.46 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=72.6
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcC----------eEEEEcccccccccCHHHHhccC
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQTSWIQSGSIRDNILYG 681 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g----------~iayv~Q~pwi~~~TIreNIlfg 681 (1059)
.++.+.-.+++|+.++++|++|+|||||+++|+|+..+..|+|..++ .+.+++|.+++++.....|+.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 45666777889999999999999999999999999999999998764 58999999999998888888776
Q ss_pred CCCC---H--HHHHHHHHHcCCc
Q 001528 682 KPMD---K--ARYDKAIKACALD 699 (1059)
Q Consensus 682 ~~~~---~--~~y~~vl~ac~L~ 699 (1059)
.+.+ . ..+.+..+.|...
T Consensus 264 ~~~~~l~~~f~~~~~~~~~c~f~ 286 (356)
T PRK01889 264 DAEDGVEETFSDIEELAAQCRFR 286 (356)
T ss_pred CchhhHHHhHHHHHHHHccCCCC
Confidence 5432 1 3566677777665
No 478
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.20 E-value=7.8e-05 Score=92.19 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
..+++++.++..+..+++.++....+.+....+...+++++++.|.++|+....|+++||+++|++.+++.....+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555666777777788899999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~ 1040 (1059)
..++.+++.++++....|++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888877777777776443
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.20 E-value=1.4e-06 Score=92.32 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=71.0
Q ss_pred EEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHH-----hccC--CCCCHHHHHHHHHHcC
Q 001528 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN-----ILYG--KPMDKARYDKAIKACA 697 (1059)
Q Consensus 625 ~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreN-----Ilfg--~~~~~~~y~~vl~ac~ 697 (1059)
+++|+|++|||||||.+.|.+.+. .+.+.+++++.+...-+.+++ ..++ .+++.+.+.+.++...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--------~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--------NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--------CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHH
Confidence 479999999999999999999872 235667777776644333332 2233 3355566555555443
Q ss_pred CchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHH
Q 001528 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1059)
Q Consensus 698 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t 754 (1059)
..++ +--...+.|.|++++..+ ...+++++|+|.|++..++..
T Consensus 73 ~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 73 NGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred CCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 3222 222345677777766544 568899999999999888633
No 480
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.18 E-value=7.8e-05 Score=94.08 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
...++++.++..++.+++..+....+.+...+++.++++++++.|++||+..++|.++||++ |++.+.+.+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 34455555566677778888888889999999999999999999999999999999999998 88888888777666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~~ 1041 (1059)
.....++..++++....|++.+++
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566556666666666777765543
No 481
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.17 E-value=0.0001 Score=90.93 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHH
Q 001528 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1059)
Q Consensus 943 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~ 1022 (1059)
+++++..++.++..++....+.+....+..++++++++.|++||+..+.|.+++|+++|++.++..+...+..++...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677777889999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001528 1023 LLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 1023 ~l~~~~vi~~~~p~~~~~ 1040 (1059)
+++++++++...|.+.++
T Consensus 148 ~~~~~~~l~~~~~~l~l~ 165 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALT 165 (574)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877654
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.17 E-value=3.9e-06 Score=91.66 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=72.4
Q ss_pred CcEEEEEccCCCChhHHHHHHhCCC---CCCcc---EEEEcCeEEEEcccccccccCHHHHhccCCCCC----HHHHHHH
Q 001528 623 AQKIAVCGSVGAGKSSLLYAILGEI---PKISG---TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMD----KARYDKA 692 (1059)
Q Consensus 623 G~~vaIvG~sGsGKSTLl~~llGe~---~~~~G---~I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~----~~~y~~v 692 (1059)
|....|+||.|+|||+|+.-+.=-+ .+.-| .+.-.|++-|+. .+.+ .+|+.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~-----------------~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-----------------AEDPREEIHRRLEAI 63 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE-----------------CCCCHHHHHHHHHHH
Confidence 6789999999999999997664110 00111 011123444543 2222 2455555
Q ss_pred HHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHH----------------HhhcCCCEEEEcCCCcc------c
Q 001528 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR----------------AVYNDADIYLFDDPFSA------V 750 (1059)
Q Consensus 693 l~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR----------------Aly~~~~IllLDdp~SA------l 750 (1059)
.+.+++.+ +++. .-..+|+.|++.++| +...+|+++++| |+++ .
T Consensus 64 ~~~~~~~~----~~~r---------l~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~ 129 (239)
T cd01125 64 LQHLEPDD----AGDR---------LFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEN 129 (239)
T ss_pred HhhcCCcC----cccc---------eEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcC
Confidence 55544321 1110 011245566665554 345799999999 8875 5
Q ss_pred CHHHHHHHHHHHHHHhc--CCCEEEEEcCCcc
Q 001528 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVE 780 (1059)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlVTH~l~ 780 (1059)
|....+.+++ .+.... .|.|+|+++|...
T Consensus 130 d~~~~~~~~~-~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 130 DNGAMDAVIK-ALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CHHHHHHHHH-HHHHHHHHhCCEEEEEeccCc
Confidence 8877776654 444432 4789999999764
No 483
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=2.8e-05 Score=78.73 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=99.1
Q ss_pred CCccccee--eeecCCcEEEEEccCCCChhHHHHHHhCCC--CCCccEEEEcCeEEEEcccccccccCHHHHhccCC---
Q 001528 610 IPTLRGVN--LDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK--- 682 (1059)
Q Consensus 610 ~~~L~~in--l~i~~G~~vaIvG~sGsGKSTLl~~llGe~--~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlfg~--- 682 (1059)
.|+.+++. |++++ -++.|+|.+||||||||-+|.--| ++..|.=...| +--.....+.+++..-.
T Consensus 23 lPa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~-------~~~~s~s~l~~~~k~~~~~k 94 (233)
T COG3910 23 LPAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKG-------ELDASHSALVDYAKLHKRKK 94 (233)
T ss_pred chHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCc-------ccccccchHHHhHHHhhcCC
Confidence 34444443 33333 478999999999999999885443 23333322222 11222334555654321
Q ss_pred C-----CCHHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCC---ChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHH
Q 001528 683 P-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL---SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1059)
Q Consensus 683 ~-----~~~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~L---SGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t 754 (1059)
+ +..|-.-.++.. .+|+.. +.+-+|..| |-|+-=-=-..|.+ .+..||+||||=|||-+.-
T Consensus 95 ~~~g~FlRAEs~yn~as~---~De~~~-------e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~R 163 (233)
T COG3910 95 PPIGFFLRAESFYNVASY---LDEADG-------EANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSR 163 (233)
T ss_pred CCcceEEehhHHHHHHHH---HHhhhh-------hcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHH
Confidence 1 123444444431 122221 111223333 77775444444443 6789999999999999987
Q ss_pred HHHHHHHHHHH-hcCCCEEEEEcCCcccc--ccCCeEEEEeCCeEEEecChHHH
Q 001528 755 AATLFNECVMA-ALEKKTVILVTHQVEFL--SEVDRILVLEGGQITQSGNYQEL 805 (1059)
Q Consensus 755 ~~~i~~~~i~~-~l~~kTvIlVTH~l~~l--~~aD~Iivl~~G~I~e~Gt~~eL 805 (1059)
.-.+.. .+.. .-.|.-+|++||.+=.+ |.| .|+-++.|.+. .-+|+|.
T Consensus 164 Qlella-~l~~la~sGaQ~IiATHSPiLlAiP~A-~I~~~~~~g~~-~~~fe~t 214 (233)
T COG3910 164 QLELLA-ILRDLADSGAQIIIATHSPILLAIPGA-EIYEISESGIE-ERDFEET 214 (233)
T ss_pred HHHHHH-HHHHHHhcCCeEEEEecChhheeCCCc-EEEEEecCCcc-ccchHHH
Confidence 665542 2333 23688999999998765 444 77878776644 4456664
No 484
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.14 E-value=1.3e-06 Score=103.15 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=88.1
Q ss_pred ceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEcccccccccCHHHHhcc-C----CCC--CHH
Q 001528 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY-G----KPM--DKA 687 (1059)
Q Consensus 615 ~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNIlf-g----~~~--~~~ 687 (1059)
+.+..+++|+.+++|||+|+||||++.-|.+.+.+.+|.. +|+++++++ +..+..||+.+ + -+. .++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt--~RigA~EQLr~~AeilGVpv~~~~~ 321 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDS--YRIGGHEQLRIYGKILGVPVHAVKD 321 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCc--cchhHHHHHHHHHHHhCCCeeccCC
Confidence 3444466799999999999999999999999987777642 678999998 67788999864 2 232 111
Q ss_pred HHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCC-----CEEEEcCCCcccCHHHHHHHHHHH
Q 001528 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-----DIYLFDDPFSAVDAHTAATLFNEC 762 (1059)
Q Consensus 688 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~-----~IllLDdp~SAlD~~t~~~i~~~~ 762 (1059)
+.+.. ..+..+.+.|...|..-|.+-. ..++..+.+.++++ .+|+||..+..-|.....+-|
T Consensus 322 ~~Dl~-------~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f--- 388 (484)
T PRK06995 322 AADLR-------LALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY--- 388 (484)
T ss_pred chhHH-------HHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh---
Confidence 11111 2344556667777777553211 11233333344443 678898888774433222211
Q ss_pred HHHhcCCCEEEEEcCC
Q 001528 763 VMAALEKKTVILVTHQ 778 (1059)
Q Consensus 763 i~~~l~~kTvIlVTH~ 778 (1059)
.. .+.+.+++|+=
T Consensus 389 -~~--~~~~g~IlTKl 401 (484)
T PRK06995 389 -RG--PGLAGCILTKL 401 (484)
T ss_pred -cc--CCCCEEEEeCC
Confidence 11 35566777773
No 485
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.12 E-value=0.012 Score=68.60 Aligned_cols=217 Identities=10% Similarity=0.043 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVG 417 (1059)
Q Consensus 339 ~~~~~~~~~r~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg 417 (1059)
.+...++..|.|..|+....++-+++... +. -=.|++.|++++.+.. .....+..+++.++.-+.+||.+-|
T Consensus 159 ~~~~~~l~irWR~wLT~~yl~~Wl~~r~i---en----PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~ 231 (409)
T PRK11098 159 NFFVSHYVFRWRTAMNEYYMAHWQKLRHI---EG----AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSA 231 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CC----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888999999999998888766411 11 2457888998876643 2344555666666666666776444
Q ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchH-HHHHHHH
Q 001528 418 LG-------------ALPGLVLFLICGLLNVPFAKILQKCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWE-EKFKSLI 482 (1059)
Q Consensus 418 ~~-------------~l~gl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~d~r~~~~~E~L~~ik~IK~~~wE-~~f~~~i 482 (1059)
.. ..+.++..++...+...+++++.+..- ++...-|=|-.++- .=++-. .-| +..+++.
T Consensus 232 ~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVr-vrenaE-----~~E~~~L~~~F 305 (409)
T PRK11098 232 HVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVY-GEDDAD-----RATPPTVRELF 305 (409)
T ss_pred ccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhH-hhhhhh-----HHHHHHHHHHH
Confidence 21 111121122222222334444333222 22222233333321 000001 113 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 483 ESRREKEFKWLSEAQLRKAYGTVIYW---MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIM 559 (1059)
Q Consensus 483 ~~~R~~El~~l~~~~~~~~~~~~~~~---~~~~~v~~~~f~~~~l~~~~~lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~ 559 (1059)
.+.++.-.+..+...+...+...... ..|.++.+- .+. .++++.|.+..+...|+.++..++.+.+....+
T Consensus 306 ~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP-----~y~-aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~l 379 (409)
T PRK11098 306 SNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFP-----SIV-AGTITLGLMTQITNVFGQVRGSFQYLINSWTTI 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443333333333333332222 233333221 122 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 001528 560 IQVKVSFDRINAFLL 574 (1059)
Q Consensus 560 ~~a~vs~~Ri~~fL~ 574 (1059)
.+-....+|+.+|.+
T Consensus 380 ael~A~~~RL~~F~~ 394 (409)
T PRK11098 380 VELLSIYKRLRSFEA 394 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999975
No 486
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.11 E-value=0.011 Score=62.97 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=110.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1059)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1059)
+.++|.|++++.....+.+...++..+.|++...-||-+-+++ .+....+++..++.-.+.+ .....-.|+-.|
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~--~~~~~~~~~~~l~~~~iga----aRR~~DTRvf~r 75 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGD--VWQALMYAALVLLMWAIGA----ARRIYDTRVFSR 75 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhh----hhHHHhhHHHHH
Confidence 5788999999999999999999999999999999888765432 3333333333332222222 222335677889
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1059)
Q Consensus 349 ~r~~l~~~iy~K~L~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1059)
++..+...++.+.-+ ++.+.+++..+++- ...+.|++. .++.+..+.++++.++++|...--|..+++++.+
T Consensus 76 Iy~~la~~vi~~qr~------~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l 148 (237)
T PF13748_consen 76 IYAELAVPVILSQRQ------QGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLIL 148 (237)
T ss_pred HHHHHhHHHHHHHHH------hCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887765432 33455666666521 122333333 3556677888999888888765555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001528 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRST 459 (1059)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~ 459 (1059)
+++..+...+.++..+...+.....+++++.+
T Consensus 149 ~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i 180 (237)
T PF13748_consen 149 ALFLLILPRFARRNYRLYRRLNNRLEKEVDII 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHh
Confidence 44444445566666666555555555555443
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.08 E-value=2.6e-06 Score=89.26 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=43.1
Q ss_pred cccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCe
Q 001528 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS 659 (1059)
Q Consensus 612 ~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~ 659 (1059)
..+-+.+.+++|+.++|+||+|||||||+++|+|++++.+|.|.+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 455567789999999999999999999999999999999999988764
No 488
>PRK14079 recF recombination protein F; Provisional
Probab=98.07 E-value=6.4e-06 Score=94.83 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHhh---------cCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCCEEEEEcCCccccccCCeEE
Q 001528 719 NLSGGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1059)
Q Consensus 719 ~LSGGQkQRIaLARAly---------~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~l~~kTvIlVTH~l~~l~~aD~Ii 789 (1059)
-+|+||+++++||+++. .+++|+|||||+|.||.+....+. +.+... .. ++|| ..+.-+-+|+++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~-~~l~~~--~q--~~it-~t~~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALL-ALAASL--PQ--AIVA-GTEAPPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHH-HHHhcC--Cc--EEEE-cCCCCCCCceEE
Confidence 57999999999999998 899999999999999999988875 344322 13 3444 234556689999
Q ss_pred EEeCCeEEEe
Q 001528 790 VLEGGQITQS 799 (1059)
Q Consensus 790 vl~~G~I~e~ 799 (1059)
.+++|++.-.
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999987643
No 489
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.03 E-value=0.00013 Score=89.96 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
+++++++.++..++.+++..+....+.+...+++.++++++++.|++||+..++|.++||+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444445555555556666678888999999999999999999999999999999999999999877666666666
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHH
Q 001528 1018 ASGTELLAIIGIM-TFVTWQVLV 1039 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi-~~~~p~~~~ 1039 (1059)
...+..+..++++ ....|.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~l 141 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTL 141 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 6655555444444 345665533
No 490
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.02 E-value=0.00032 Score=86.90 Aligned_cols=98 Identities=15% Similarity=0.349 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHHHHH
Q 001528 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1059)
Q Consensus 944 l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~ 1023 (1059)
++++..++.+++..+....+.+....+..++++++++.|.++|+....|.++||+++|++.+.+.+...+..++...+.+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677778888999999999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 001528 1024 LAIIGIMTFVTWQVLVVA 1041 (1059)
Q Consensus 1024 l~~~~vi~~~~p~~~~~~ 1041 (1059)
++.++++....|++.+++
T Consensus 154 ~~~~~~l~~~~~~l~l~~ 171 (582)
T PRK11176 154 IGLFIMMFYYSWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777777765543
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.99 E-value=1.3e-06 Score=105.11 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=79.3
Q ss_pred eecCCcEEEEEccCCCChhHHHHHHhCC--CCCCccEEEEcCeEEEEcccccccccCHHHHh-ccCCCCCHHHHHH----
Q 001528 619 DIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDK---- 691 (1059)
Q Consensus 619 ~i~~G~~vaIvG~sGsGKSTLl~~llGe--~~~~~G~I~v~g~iayv~Q~pwi~~~TIreNI-lfg~~~~~~~y~~---- 691 (1059)
-+++|..+.|.|++|||||||..-.+-. .+.-+.-+.+.. +++ ...+++|- .||-++ +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~------eE~---~~~l~~~~~~~G~~~--~~~~~~g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF------EES---PQDIIKNARSFGWDL--QKLVDEGKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE------ecC---HHHHHHHHHHcCCCH--HHHhhcCce
Confidence 5899999999999999999999877533 222233333221 111 12233332 133221 11110
Q ss_pred -------------HHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHH--HHhhcCCCEEEEcCCCcccCHHHHH
Q 001528 692 -------------AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA--RAVYNDADIYLFDDPFSAVDAHTAA 756 (1059)
Q Consensus 692 -------------vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA--RAly~~~~IllLDdp~SAlD~~t~~ 756 (1059)
+++..+++ .........+|+||+|||.|+ .|+..+++.+ ....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~-----------~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 86 FILDASPDPEGQDVVGGFDLS-----------ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred EEEecCchhccccccccCCHH-----------HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 01111111 111222357899999999999 6776665433 23444
Q ss_pred HHHHHHHHHh-cCCCEEEEEcCCcccc---------c-cCCeEEEEe
Q 001528 757 TLFNECVMAA-LEKKTVILVTHQVEFL---------S-EVDRILVLE 792 (1059)
Q Consensus 757 ~i~~~~i~~~-l~~kTvIlVTH~l~~l---------~-~aD~Iivl~ 792 (1059)
+++ +.+..+ -.|+|+|++||+.+.. . -||.|+.|+
T Consensus 145 ~l~-~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIF-RLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHH-HHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 443 344332 2589999999987531 1 368899886
No 492
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.98 E-value=0.00031 Score=86.69 Aligned_cols=103 Identities=17% Similarity=0.368 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHH
Q 001528 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1059)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1017 (1059)
...++++.++..++.++..++..+.+.+....+++++.+++++.|++|||.++.|.+++|+++|++.++..+......+.
T Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~ 134 (567)
T COG1132 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVF 134 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 33344444445555555556666667899999999999999999999999999999999999999999998887755555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 001528 1018 ASGTELLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 1018 ~~~~~~l~~~~vi~~~~p~~~~~ 1040 (1059)
...+.+++.+++.....|.+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~l~l~ 157 (567)
T COG1132 135 TSILLLIGSLVLLFSLSWRLALI 157 (567)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677777777777777766544
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.97 E-value=6.5e-06 Score=87.85 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred ecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccccccc
Q 001528 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1059)
Q Consensus 620 i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pwi~~~ 672 (1059)
=|+|++++|+|++|||||||+++|.|.+++ +.+++++|+.+..+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccccccCh
Confidence 378999999999999999999999998764 468889999987653
No 494
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=97.95 E-value=0.016 Score=64.87 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001528 286 ALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKL 364 (1059)
Q Consensus 286 ~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~r~r~~l~~~iy~K~L~l 364 (1059)
.++...+.......-+.+.+.+.+.+. .....+. ..++..+..+.......+...+++.+.|..|+..+.++-++=
T Consensus 36 ~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~---~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~ 112 (281)
T PF06472_consen 36 LLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLL---LFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSN 112 (281)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444455556666554322 2222222 222233333344444556678999999999999999888764
Q ss_pred CcccCCCCCHH---HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001528 365 SSLGRKKHSTG---EIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGAL-PGLVLFLICGLLNVPFAK 439 (1059)
Q Consensus 365 ~~~~~~~~~~G---~ivnl~s~D~~~i~~~-~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l-~gl~~~~~~~~l~~~~~~ 439 (1059)
..-.+-....+ ..=.+++.|++++.+. ......+...++.++.-.+.||...|+... +.++..++...+...+++
T Consensus 113 ~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~ 192 (281)
T PF06472_consen 113 RTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGP 192 (281)
T ss_pred chhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 43222111122 2234899999998764 334556666677777777888888776554 333333333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH
Q 001528 440 ILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI 482 (1059)
Q Consensus 440 ~~~~~~~~~~~~~d~r~~~~~E~L~~ik~IK~~~wE~~f~~~i 482 (1059)
...+...+..+...+--.....+.++-+.|-+|+-|+.-.+++
T Consensus 193 ~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l 235 (281)
T PF06472_consen 193 PLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRL 235 (281)
T ss_pred hhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHH
Confidence 5555444444433333334567777888888888776544433
No 495
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.91 E-value=7.7e-05 Score=87.82 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=92.6
Q ss_pred CCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEcCeEEEEccccc-----ccccCHHHH-hccCCC
Q 001528 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-----IQSGSIRDN-ILYGKP 683 (1059)
Q Consensus 610 ~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~g~iayv~Q~pw-----i~~~TIreN-Ilfg~~ 683 (1059)
..+++++ +++.+||+++|+|++|+|||||++.|.|..++..|.+...| .=.++-. ...+.-.++ +.+-..
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG---~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIG---ERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEe---ecchHHHHHHHHHhcccccceEEEEEEC
Confidence 4688888 99999999999999999999999999999988766443221 1111100 000000001 111111
Q ss_pred CC---HHHHHHHHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCE-EEEcCC--CcccCHHHHHH
Q 001528 684 MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI-YLFDDP--FSAVDAHTAAT 757 (1059)
Q Consensus 684 ~~---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I-llLDdp--~SAlD~~t~~~ 757 (1059)
.| -++|..+.-+|...+.+.. .|.+-.+==. +|+ | .|||.= +| +.+.|| +.+.|+.....
T Consensus 227 ~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~D--slT-----r--~A~A~R---Eisl~~ge~P~~~Gypp~~~~~ 292 (440)
T TIGR01026 227 SDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMD--SVT-----R--FAMAQR---EIGLAAGEPPATKGYTPSVFST 292 (440)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEe--ChH-----H--HHHHHH---HHHHhcCCCCcccccChhHHHH
Confidence 11 2444444444444333331 1222111000 000 0 011100 00 112333 34677776665
Q ss_pred HHHHHHHHh-cCCC-------EEEEEcCCccccccCCeEEEEeCCeEEEecChHH
Q 001528 758 LFNECVMAA-LEKK-------TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1059)
Q Consensus 758 i~~~~i~~~-l~~k-------TvIlVTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e 804 (1059)
+- +.+... ..++ |+++-+|.+ .=+-+|++.-+.||+|+-.++-.+
T Consensus 293 l~-~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 293 LP-RLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HH-HHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhh
Confidence 43 333322 3457 888889987 345689999999999998765433
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=2.1e-05 Score=104.49 Aligned_cols=141 Identities=17% Similarity=0.320 Sum_probs=77.5
Q ss_pred eeeeecCCcEEEEEccCCCChhHHHHHHhCCCC-CCccEEEEcCeEEEEcccccccc-cCHHHHhccCCCCC-HHHHHHH
Q 001528 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYGSIAYVSQTSWIQS-GSIRDNILYGKPMD-KARYDKA 692 (1059)
Q Consensus 616 inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~-~~~G~I~v~g~iayv~Q~pwi~~-~TIreNIlfg~~~~-~~~y~~v 692 (1059)
++++.++++.++|+|+.|+|||||++++.+.+. .-+|.+.+++. ++.+..-.+. .+.. .++ .....+
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~--~v~~~~~~~~~~~~~-------~~~~~~~l~~- 269 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA--FISKSMEIYSSANPD-------DYNMKLHLQR- 269 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc--ccccchhhccccccc-------ccchhHHHHH-
Confidence 456778899999999999999999999966553 44788877641 2221110000 0000 000 001110
Q ss_pred HHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHHHHh----cC
Q 001528 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA----LE 768 (1059)
Q Consensus 693 l~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i~~~----l~ 768 (1059)
+.+..+.+..+..+. . .|+.|+|+. .++-+++|||. |... .+ +.+.+. -.
T Consensus 270 -------~~l~~il~~~~~~~~----~-~~~~~~~L~------~krvLLVLDdv----~~~~---~l-~~L~~~~~~~~~ 323 (1153)
T PLN03210 270 -------AFLSEILDKKDIKIY----H-LGAMEERLK------HRKVLIFIDDL----DDQD---VL-DALAGQTQWFGS 323 (1153)
T ss_pred -------HHHHHHhCCCCcccC----C-HHHHHHHHh------CCeEEEEEeCC----CCHH---HH-HHHHhhCccCCC
Confidence 111111111111111 1 266777743 55567789995 3322 22 233332 25
Q ss_pred CCEEEEEcCCcccccc--CCeEEEEe
Q 001528 769 KKTVILVTHQVEFLSE--VDRILVLE 792 (1059)
Q Consensus 769 ~kTvIlVTH~l~~l~~--aD~Iivl~ 792 (1059)
|.++|++||+.+.+.. +|+++.++
T Consensus 324 GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 324 GSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred CcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 8899999999988754 68888774
No 497
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.89 E-value=4.6e-05 Score=97.57 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=43.7
Q ss_pred HHHHhhcCCCEEEEcCCCccc-CHHHHHHHHHHHHHHh-cCCCEEEEEcCCcccccc
Q 001528 730 LARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE 784 (1059)
Q Consensus 730 LARAly~~~~IllLDdp~SAl-D~~t~~~i~~~~i~~~-l~~kTvIlVTH~l~~l~~ 784 (1059)
++|++..+|.++++|||.+++ |+...+.+ .+.++.. .+|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i-~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKI-REWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 67776665 4556544 468899999999987654
No 498
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.88 E-value=0.0006 Score=86.25 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHhhhhhcHHHHHhhhHHHHHHHHHHH
Q 001528 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1059)
Q Consensus 941 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ml~~vlraPm~FFd~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1020 (1059)
++++.++..++.+++..+....+.+...++..++++++++.|++| +..++|.+++|+ +|++.+.+.+...+...+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~ 270 (694)
T TIGR03375 193 VALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence 333444556677778888888899999999999999999999998 788999999999 799999998877766666666
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 001528 1021 TELLAIIGIMTFVTWQVLVV 1040 (1059)
Q Consensus 1021 ~~~l~~~~vi~~~~p~~~~~ 1040 (1059)
+.++..++++....|++.++
T Consensus 271 ~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 271 PFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 66666666666667766443
No 499
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=97.83 E-value=0.0001 Score=82.54 Aligned_cols=156 Identities=23% Similarity=0.225 Sum_probs=107.7
Q ss_pred eeeecCCcEEEEEccCCCChhHHHHHHh-CCCCCCcc--E--EEEcCeEEEEcccccccccCHHHHhccCCCCCHHHHHH
Q 001528 617 NLDIKWAQKIAVCGSVGAGKSSLLYAIL-GEIPKISG--T--VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1059)
Q Consensus 617 nl~i~~G~~vaIvG~sGsGKSTLl~~ll-Ge~~~~~G--~--I~v~g~iayv~Q~pwi~~~TIreNIlfg~~~~~~~y~~ 691 (1059)
-+-|++| ++.|+|+.--|||||+.+|- |-++..-| . |--+-+.+++.-+ |+ +
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~vVTd~~lakaeae----------~g------------r 293 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERVVTDVKLAKAEAE----------EG------------R 293 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEEEehhhhhhhhcc----------cc------------e
Confidence 3678999 99999999999999999995 44554444 1 1111123332211 11 1
Q ss_pred HHHHcCCchHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHhhcCCCEEEEcCCCcccCHHHHHHHHHHHH--------
Q 001528 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-------- 763 (1059)
Q Consensus 692 vl~ac~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDdp~SAlD~~t~~~i~~~~i-------- 763 (1059)
.+.-..+..+|+.||.|-+|.---.| .=||--++=-.|=||+=..+.+++.||=+||+.--+.. ++.+-+
T Consensus 294 ~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlake~eG~rtl~p 371 (554)
T COG3044 294 CVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAKESEGERTLTP 371 (554)
T ss_pred eeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHHHhcCcccchH
Confidence 11122356799999999999755444 34999999999999999999999999999998543322 111111
Q ss_pred --H--HhcCC--CEEEEEcCCcc-ccccCCeEEEEeCCeEE
Q 001528 764 --M--AALEK--KTVILVTHQVE-FLSEVDRILVLEGGQIT 797 (1059)
Q Consensus 764 --~--~~l~~--kTvIlVTH~l~-~l~~aD~Iivl~~G~I~ 797 (1059)
+ +-++| -+.|.||-.+. ++.-+|++|+|+|-+-.
T Consensus 372 l~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 372 LVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred HHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1 12233 68899998885 57889999999998765
No 500
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.83 E-value=3.9e-05 Score=89.61 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCcccceeeeecCCcEEEEEccCCCChhHHHHHHhCCCCCCccEEEEc
Q 001528 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657 (1059)
Q Consensus 592 ~~~i~~~~~sf~~~~~~~~~~L~~inl~i~~G~~vaIvG~sGsGKSTLl~~llGe~~~~~G~I~v~ 657 (1059)
.+.++.++++..|.. ...+++.++ ++.+||+++|+|++|||||||++.|.|..+++.|.|...
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~li 199 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALV 199 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeec
Confidence 346788888888864 357888886 999999999999999999999999999999998877653
Done!