Query         001528
Match_columns 1059
No_of_seqs    401 out of 3519
Neff          7.5 
Searched_HMMs 29240
Date          Tue Mar 26 16:22:15 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/001528.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_pdb/001528hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4f4c_A Multidrug resistance pr   1.0       1       1  980.1  80.0  836  217-1055    1-916 (1321)
  2 3g5u_A MCG1178, multidrug resi   1.0       1       1  788.6  68.9  775  276-1055   47-874 (1284)
  3 4f4c_A Multidrug resistance pr   1.0       1       1  700.5  57.2  528  292-820   767-1317(1321)
  4 4a82_A Cystic fibrosis transme   1.0       1       1  671.0  62.1  547  270-818     7-575 (578)
  5 3qf4_B Uncharacterized ABC tra   1.0       1       1  663.3  60.5  545  272-821    32-592 (598)
  6 3qf4_A ABC transporter, ATP-bi   1.0       1       1  662.2  67.3  550  268-820    14-579 (587)
  7 3b60_A Lipid A export ATP-bind   1.0       1       1  633.9  69.6  541  271-819    19-579 (582)
  8 2yl4_A ATP-binding cassette SU   1.0       1       1  633.4  67.0  546  270-819    12-583 (595)
  9 3b5x_A Lipid A export ATP-bind   1.0       1       1  632.4  73.7  542  270-819    18-579 (582)
 10 3g5u_A MCG1178, multidrug resi   1.0       1       1  595.7  56.3  548  273-821   701-1272(1284)

No 1  
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00  E-value=1  Score=980.08  Aligned_cols=836  Identities=19%  Similarity=0.197  Sum_probs=590.9

Q ss_pred             HHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---------CCCCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             9980315-98888899999965928999999999999998730---------2799983089999999-66879999999
Q 001528          217 LLSLGYS-KPLALEDIPSLVPEDEASFAYQKFAYAWDSLVREN---------NSNNNGNLVRKVITNV-YLKENIFIAIC  285 (1059)
Q Consensus       217 l~~~g~~-~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~---------~~~~~~~~l~~~l~~~-~~~~~~~~~~~  285 (1059)
                      +++.|.+ ++|+..|.+.+.++|..+...+.+++.|.+..++.         +++..++.-++.+++. -+.+.++..+.
T Consensus         1 ~~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g   80 (1321)
T 4f4c_A            1 MLRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIG   80 (1321)
T ss_dssp             ---CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf             98773100687635445679501110000113454243554334310012232025687799997315676789999999


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHCC-------C--------CCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999---9999998502-------8--------972----4688-99999999999999999999999999
Q 001528          286 ALLRTIAVVVGPL---LLYAFVNYSN-------R--------GEE----NLQE-GLSIVGCLIITKVVESFTQRHCFFGS  342 (1059)
Q Consensus       286 ~l~~~~~~~~~P~---ll~~li~~~~-------~--------~~~----~~~~-g~~l~~~l~~~~~~~~~~~~~~~~~~  342 (1059)
                      .+...+.+.+.|+   ++..+++...       .        ...    .... ...++..++...++..++.....+..
T Consensus        81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~  160 (1321)
T 4f4c_A           81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY  160 (1321)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999997010001454300034431001689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999854893467889988999999989999941888-9999999999999999999999978999
Q 001528          343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL  421 (1059)
Q Consensus       343 ~~~~~~ir~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l  421 (1059)
                      ...+.|+...++..+|+|.++++...++++++|+++|++++|+++++++.. .+..++..++.++.++++++..-+..++
T Consensus       161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l  240 (1321)
T 4f4c_A          161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL  240 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999997889899879984899999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999933899998241999999999999999999999999999
Q 001528          422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA  501 (1059)
Q Consensus       422 ~gl~~l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~  501 (1059)
                      +.++++++..++...+.+++++..++.++..+++.+.++|.++|||+||+|+||+.+.++..+..++..+...+.....+
T Consensus       241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (1321)
T 4f4c_A          241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG  320 (1321)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999999983999998214299999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999-999999999999999999846987888899999999999999999999999999999999999999844778997
Q 001528          502 YGTV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN  580 (1059)
Q Consensus       502 ~~~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~  580 (1059)
                      .... ..........++.+.+..++.++.++++.+|+++.++..+..|+..++..+..+.++.+|.+|+.++++.++..+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~  400 (1321)
T 4f4c_A          321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID  400 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999999999999999999599869999999999999999999899999999999999999999971785345


Q ss_pred             C-HHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-
Q ss_conf             0-00100246899858998215750899998732341356338818999746899945789998377779760899839-
Q 001528          581 D-DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-  658 (1059)
Q Consensus       581 ~-~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g-  658 (1059)
                      + ...........+.|+++|++|+|+..++.|+|+|+||+|++|+++|||||||||||||+++|+|+|+|.+|+|.++| 
T Consensus       401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~  480 (1321)
T 4f4c_A          401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV  480 (1321)
T ss_dssp             CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             66655656778887679998554079999874333318862288278998058985778888754565164486157996


Q ss_pred             ------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             ------------2889836654346678888036999-999999999999089167711889997301589998991799
Q 001528          659 ------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK  725 (1059)
Q Consensus       659 ------------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQk  725 (1059)
                                  +||||+|+|||||+||||||+||+| .+++++++|++.|++++|++.||+||+|+|||+|.+||||||
T Consensus       481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk  560 (1321)
T 4f4c_A          481 DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK  560 (1321)
T ss_dssp             ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred             CCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCHHHH
T ss_conf             50112599985046665875332078616788641552209999999987565468870888886075589887777787


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHH
Q ss_conf             99999998515997998717776457888999999999773399889998479652002896899839948782286899
Q 001528          726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL  805 (1059)
Q Consensus       726 QRIaLARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eL  805 (1059)
                      |||+||||+|+||+||||||||||||+++++.+ ++++.+++++||+|+||||+++++.||+|++|++|+|+|+|+|+||
T Consensus       561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i-~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL  639 (1321)
T 4f4c_A          561 QRIAIARALVRNPKILLLDEATSALDAESEGIV-QQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL  639 (1321)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH-HHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEECCCCHHHH
T ss_conf             999999987259998998455446887899999-9999998479889997363878986898999639965136899999


Q ss_pred             HHCCCHHHHHHHHHHHHCCC----CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------
Q ss_conf             87182489999974311026----99998889998510011-46789999999888777864432333578783------
Q 001528          806 LLAGTAFEQLVNAHRDAITG----LGPLDNAGQGGAEKVEK-GRTARPEEPNGIYPRKESSEGEISVKGLTQLT------  874 (1059)
Q Consensus       806 l~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------  874 (1059)
                      +++++.|+++++.+......    .+....+.....+..+. .......+..+. ..+... ............      
T Consensus       640 ~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  717 (1321)
T 4f4c_A          640 MAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDI-MNRVRS-STIGSITNGPVIDEKEER  717 (1321)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------CC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHC-CCCCCCCCCCCHHHHHHH
T ss_conf             985327999999622122223323344332232111222223422222221102-211101-321245677402577753


Q ss_pred             ---------HHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCC---CCCHHHH
Q ss_conf             ---------4664552960389999999972805899999999999999999588888630----34776---6732789
Q 001528          875 ---------EDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYA----IQIPK---ITSGILI  938 (1059)
Q Consensus       875 ---------~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~w----~~~~~---~~~~~~l  938 (1059)
                               .+|.++.|..++.+|+.|......++.+++.+++..+.........+|++.|    ...+.   ....+|.
T Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1321)
T 4f4c_A          718 IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWA  797 (1321)
T ss_dssp             CCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             15403899999999707863109999999877899999999999999999999999999999875179345566789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999887395313123--5724878565323879983449999999
Q 001528          939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1059)
Q Consensus       939 ~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~vlraPmsFFd~--tP~GrIlNRfS~D~~~iD~~lp~~~~~~ 1016 (1059)
                      .+|.+++++..++.+++.++....+.++++++|++++++++++||+|||+  ||+|||+|||++|++.+|..++..+..+
T Consensus       798 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~  877 (1321)
T 4f4c_A          798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTV  877 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999988873499333216788848888502505999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999998998999776899999999999999998875
Q 001528         1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQVDQ 1055 (1059)
Q Consensus      1017 ~~~~~~~l~~i~vi~~~~p~~~~~~ipl~~~~~~~q~~y 1055 (1059)
                      +...+.+++.++++....|++.++++++..++.+.+.++
T Consensus       878 ~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~  916 (1321)
T 4f4c_A          878 ITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLR  916 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998653777702213786899999999888999999999


No 2  
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00  E-value=1  Score=788.59  Aligned_cols=775  Identities=17%  Similarity=0.168  Sum_probs=527.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------C-C---------CH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68799999999999999999999999999850289--------7-2---------46-8899999999999999999999
Q 001528          276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG--------E-E---------NL-QEGLSIVGCLIITKVVESFTQR  336 (1059)
Q Consensus       276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~--------~-~---------~~-~~g~~l~~~l~~~~~~~~~~~~  336 (1059)
                      +..+++..++.++..+.....|+++..+++.....        . .         .. .....++..++...++..++..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (1284)
T 3g5u_A           47 RLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAY  126 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999998613444332222221111100244688999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999998548934678899889999999899999418889-999999999999999999999
Q 001528          337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGV  415 (1059)
Q Consensus       337 ~~~~~~~~~~~~ir~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~  415 (1059)
                      ...+...+.+.++...++..+|+|.++++...++++++|+++|++++|++.+++.... +..+....+.++.++++++..
T Consensus       127 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  206 (1284)
T 3g5u_A          127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTR  206 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999998699899756887789999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97899999999999999999999999999999999999999999999933899998241999999999999999999999
Q 001528          416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE  495 (1059)
Q Consensus       416 lg~~~l~gl~~l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~  495 (1059)
                      -...+++.++++++...+...+.+..++..++..+..++......|.++|+++||.|++|+.+.++..+..++..+...+
T Consensus       207 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~  286 (1284)
T 3g5u_A          207 GWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK  286 (1284)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999999999999999999999999978799998465399999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999-99999999999999999999846987888899999999999999999999999999999999999999844
Q 001528          496 AQLRKAYG-TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL  574 (1059)
Q Consensus       496 ~~~~~~~~-~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~  574 (1059)
                      ........ ............++.+.+..++..+.++++.+++++.+......|+..+...+..+.++..+.+|+.++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~  366 (1284)
T 3g5u_A          287 KAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID  366 (1284)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999999999999299889999999999999999999999999999999999999999972


Q ss_pred             CCCCCCC-HHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             7789970-001002468998589982157508999987323413563388189997468999457899983777797608
Q 001528          575 DHELNND-DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT  653 (1059)
Q Consensus       575 ~~e~~~~-~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~  653 (1059)
                      .++..++ ...........+.|+++|++|+|+.+++.++|+|+||++++||.++||||+|||||||+++|+|+++|.+|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~  446 (1284)
T 3g5u_A          367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM  446 (1284)
T ss_dssp             CCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf             89867766656777777777189999899769999871012545897599889998999997999999980788999738


Q ss_pred             EEECC-------------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99839-------------2889836654346678888036999-999999999999089167711889997301589998
Q 001528          654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN  719 (1059)
Q Consensus       654 I~v~g-------------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~n  719 (1059)
                      |.++|             +++||+|+||+|++||||||.||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+
T Consensus       447 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~  526 (1284)
T 3g5u_A          447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ  526 (1284)
T ss_dssp             EEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred             EEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99999987757999998654898688753776699997457989999999999998296999974656334501478786


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEE
Q ss_conf             99179999999998515997998717776457888999999999773399889998479652002896899839948782
Q 001528          720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS  799 (1059)
Q Consensus       720 LSGGQkQRIaLARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~  799 (1059)
                      |||||||||+||||+|++|+|+||||||||||+++++.+ ++++....+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus       527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~  605 (1284)
T 3g5u_A          527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ  605 (1284)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEE
T ss_conf             599999999999999529998999798777799999999-9999997399989999407789974998999989999997


Q ss_pred             CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHH
Q ss_conf             2868998718248999997431102699998889998510011467899999998887778644-323335787834664
Q 001528          800 GNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEE  878 (1059)
Q Consensus       800 Gt~~eLl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~E~  878 (1059)
                      |+|+||+++++.|.+++..+..........  +.....++..................+..... ........+...+|+
T Consensus       606 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1284)
T 3g5u_A          606 GNHDELMREKGIYFKLVMTQTAGNEIELGN--EACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEA  683 (1284)
T ss_dssp             ECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------------
T ss_pred             CCHHHHHHCCCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             889999867877999999743002211133--333322222344333333332000345433344564223321102455


Q ss_pred             HH--CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCC-----CCCHHHHHHHHHHHHH
Q ss_conf             55--296038999999997280589999999999999999958----888863034776-----6732789999999999
Q 001528          879 ME--IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAA----TYWLAYAIQIPK-----ITSGILIGVYAGVSTA  947 (1059)
Q Consensus       879 ~~--~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~Wl~~w~~~~~-----~~~~~~l~vY~~l~~~  947 (1059)
                      .+  ....++..+..|.+....+..  +.+++.++..+.....    ..|+..|.+...     ....+|..+|.++++.
T Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  761 (1284)
T 3g5u_A          684 LDEDVPPASFWRILKLNSTEWPYFV--VGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGII  761 (1284)
T ss_dssp             CCCCCSCCCTTHHHHHHHHTCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             5313662589999998451579999--99999999999999999999999999855685033677999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999988739531312--35724878565323879983449999999999999998
Q 001528          948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD--STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1059)
Q Consensus       948 ~~~~~~~~~~~~~~~~~~as~~lh~~ll~~vlraPmsFFd--~tP~GrIlNRfS~D~~~iD~~lp~~~~~~~~~~~~~l~ 1025 (1059)
                      ..++.+++.+.+...+.+.++++|.++++++++.|++|||  .+|+|+|+|||++|++.+|..++..+..++...+.+++
T Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~  841 (1284)
T 3g5u_A          762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT  841 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999998399888757899889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf             998999776899---999999999999998875
Q 001528         1026 IIGIMTFVTWQV---LVVAIFAMVAVRFVQVDQ 1055 (1059)
Q Consensus      1026 ~i~vi~~~~p~~---~~~~ipl~~~~~~~q~~y 1055 (1059)
                      .++++....|..   +++.+|+.+++.+++..+
T Consensus       842 ~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~  874 (1284)
T 3g5u_A          842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM  874 (1284)
T ss_dssp             HHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999996999999999999999999999999


No 3  
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00  E-value=1  Score=700.47  Aligned_cols=528  Identities=18%  Similarity=0.207  Sum_probs=386.8

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999999999985028-9724688999999999999999999999999999999999999999999998548934678
Q 001528          292 AVVVGPLLLYAFVNYSNR-GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK  370 (1059)
Q Consensus       292 ~~~~~P~ll~~li~~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~iy~K~l~l~~~~~~  370 (1059)
                      .....+.++...++.... +......+..++..+++..++..++.....+...+.+.++...++..+|+|.++.+...++
T Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd  846 (1321)
T 4f4c_A          767 IYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFD  846 (1321)
T ss_dssp             HHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             99999999999998751793455667899999999999999999999999999999999999999998887349933321


Q ss_pred             C--CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8--9988999999989999941888-999999999999999999999997899999999999999999999999999999
Q 001528          371 K--HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSE  447 (1059)
Q Consensus       371 ~--~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~l~i~~~l~~~~~~~~~~~~~~  447 (1059)
                      .  +++|+++|+++.|++.+.+... .+..+....+.++.++++++..-...++..++++++.........++..+.+.+
T Consensus       847 ~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~  926 (1321)
T 4f4c_A          847 SPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVK  926 (1321)
T ss_dssp             SGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTT
T ss_pred             CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67888488885025059999999999999999986537777022137868999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999993389999824199999999999999999999999999999999-99999999999999999846
Q 001528          448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWMSPTIISSVIFLGCALTG  526 (1059)
Q Consensus       448 ~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~~~p~~v~~~~f~~~~l~~  526 (1059)
                      ..+...+......|.++|+++||.|++|+.+.++..+..+...+...+........... ..........+.+.+..++.
T Consensus       927 ~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 1006 (1321)
T 4f4c_A          927 SASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALII 1006 (1321)
T ss_dssp             TSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998889889999996279888614148899999999999999999999999999999999999999999987578875


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEE
Q ss_conf             98--7888899999999999999999999999999999999999999844778997000100246899858998215750
Q 001528          527 SA--PLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSW  604 (1059)
Q Consensus       527 ~~--~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~n~sf~w  604 (1059)
                      .+  .+.+..++..+..+.....|+..+......+.++..+.+|+.++++.++..++.....+..+..+.|+++|++|+|
T Consensus      1007 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y 1086 (1321)
T 4f4c_A         1007 TDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAY 1086 (1321)
T ss_dssp             SSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             37654214789999999987788999999999999999999998999860766577766778788888818999879857


Q ss_pred             CCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEEEECCCCCCCC
Q ss_conf             899998732341356338818999746899945789998377779760899839-------------2889836654346
Q 001528          605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS  671 (1059)
Q Consensus       605 ~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g-------------~iayv~Q~pwi~n  671 (1059)
                      +.+++.|+|+|+||+|++||++||||+||||||||+++|+|+++|.+|+|.++|             +++||||+|++|+
T Consensus      1087 ~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A         1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp             TTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred             CCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC
T ss_conf             99998821245169988989999989999819999999956863899789999998654999999854599878997327


Q ss_pred             CCHHHHHCCCC---CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             67888803699---999999999999908916771188999730158999899179999999998515997998717776
Q 001528          672 GSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS  748 (1059)
Q Consensus       672 ~TIreNIlfg~---~~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRIaLARAly~~~dIllLDDp~S  748 (1059)
                      |||||||.||.   ..++++++++++.|+++++++.||+|++|.|||+|.||||||||||+||||++++|+|+|||||||
T Consensus      1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A         1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp             EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred             CCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             23999974549999999999999999829849997176789998238891569999999999999971799899968111


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
Q ss_conf             457888999999999773399889998479652002896899839948782286899871824899999743
Q 001528          749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHR  820 (1059)
Q Consensus       749 AlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~~~~~~~l~~~~~  820 (1059)
                      |||++|++.| ++.+....++||+|+||||++++..||+|+||++|+|+|+|+|+||++++|.|++|++.+.
T Consensus      1247 aLD~~tE~~I-q~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A         1247 ALDTESEKVV-QEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQM 1317 (1321)
T ss_dssp             STTSHHHHHH-HHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-----------
T ss_pred             CCCHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHH
T ss_conf             5789999999-9999997399989996068999996999999989899998888999849809999999998


No 4  
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00  E-value=1  Score=670.97  Aligned_cols=547  Identities=21%  Similarity=0.289  Sum_probs=443.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999966879999999999999999999999999985028972-4-688----999999999999999999999999999
Q 001528          270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-N-LQE----GLSIVGCLIITKVVESFTQRHCFFGSR  343 (1059)
Q Consensus       270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~-~~~----g~~l~~~l~~~~~~~~~~~~~~~~~~~  343 (1059)
                      .+.+.+++.++...++.++..++..+.|+++..+++....... . ...    .+.+++++++..++..+......+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (578)
T 4a82_A            7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ   86 (578)
T ss_dssp             HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99889999999999999999999999999999999999816871146778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999998548934678899889999999899999418889-9999999999999999999999789999
Q 001528          344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP  422 (1059)
Q Consensus       344 ~~~~~ir~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~  422 (1059)
                      +.+.++...++..+|+|.++++...+++.++|+++|++++|++++.++... +..+|..++.+++++++++...++.+++
T Consensus        87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~  166 (578)
T 4a82_A           87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA  166 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999987899997689869999999999999999999999999999999999999999996999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999338999982419999999999999999999999999999
Q 001528          423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY  502 (1059)
Q Consensus       423 gl~~l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~  502 (1059)
                      .++++++..++...+.++.++..++..+..+++.+.+.|.++|+++||.|+||+.+.++..+.+++..+...+.......
T Consensus       167 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (578)
T 4a82_A          167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY  246 (578)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999998249999981664999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999-99999999999999998469878888999999999999999999999999999999999999998447789970
Q 001528          503 GTVIY-WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND  581 (1059)
Q Consensus       503 ~~~~~-~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~  581 (1059)
                      ..... .........+.+.+..++..+.++++.+++++.++..+..|+..++..+..+.++.+|.+|+.++++.++..++
T Consensus       247 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~  326 (578)
T 4a82_A          247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKN  326 (578)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999999999999999985995899999999999999999999999999999999999999999768976667


Q ss_pred             HHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---
Q ss_conf             00100246899858998215750899998732341356338818999746899945789998377779760899839---
Q 001528          582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---  658 (1059)
Q Consensus       582 ~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g---  658 (1059)
                      .....+.+...+.++++|++|+|+++ +.++|+|+||++++||.++|+||+|||||||+++|+|+++|.+|+|.++|   
T Consensus       327 ~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~  405 (578)
T 4a82_A          327 GVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI  405 (578)
T ss_dssp             CTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred             CCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEH
T ss_conf             87766667778807999999975899-97413433799879999999899998599999998467889996799999984


Q ss_pred             ----------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             ----------2889836654346678888036999-99999999999908916771188999730158999899179999
Q 001528          659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR  727 (1059)
Q Consensus       659 ----------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQR  727 (1059)
                                +++||+|+||+|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||
T Consensus       406 ~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr  485 (578)
T 4a82_A          406 KDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR  485 (578)
T ss_dssp             GGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred             HHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHH
T ss_conf             42789999600689928983476459999852799988999999998809599997573301025306889679999999


Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf             99999851599799871777645788899999999977339988999847965200289689983994878228689987
Q 001528          728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL  807 (1059)
Q Consensus       728 IaLARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~  807 (1059)
                      ++||||++++|++++||||||+||+++++.+. +++....+++|+|+|||+++.+..||+|++|++|++++.|+|+|+++
T Consensus       486 v~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          486 LSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHH
T ss_conf             99999997499999997865457999999999-99999808997999831789997199899998998999888999985


Q ss_pred             CCCHHHHHHHH
Q ss_conf             18248999997
Q 001528          808 AGTAFEQLVNA  818 (1059)
Q Consensus       808 ~~~~~~~l~~~  818 (1059)
                      .++.|+++++.
T Consensus       565 ~~~~~~~~~~~  575 (578)
T 4a82_A          565 KQGAYEHLYSI  575 (578)
T ss_dssp             TTSHHHHHHTT
T ss_pred             CCCHHHHHHHH
T ss_conf             88389999985


No 5  
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00  E-value=1  Score=663.30  Aligned_cols=545  Identities=20%  Similarity=0.209  Sum_probs=443.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99966879999999999999999999999999985028972468899999999999999999999999999999999999
Q 001528          272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS  351 (1059)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~  351 (1059)
                      ++.+++.++...++.++..++..+.|+++..+++....+. +......++.++++..++..++.....+...+.+.++..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (598)
T 3qf4_B           32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-RFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF  110 (598)
T ss_dssp             TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999997368-889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999854893467889988999999989999941888-9999999999999999999999978999999999999
Q 001528          352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC  430 (1059)
Q Consensus       352 ~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~l~i~  430 (1059)
                      .++..+|+|.++++...+++.++|+++|++++|++++.+... .+..++..++.++.++++++...++.+++.++++++.
T Consensus       111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~  190 (598)
T 3qf4_B          111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT  190 (598)
T ss_dssp             HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999997799999768888999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             999999999999999999999999999999999338999982419999999999999999999999999999999-9999
Q 001528          431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWM  509 (1059)
Q Consensus       431 ~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~  509 (1059)
                      .++...+.++.++..++..+..+++.+.+.|.++|+++||.|+||+.+.++..+.+++..+...+.......... ....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (598)
T 3qf4_B          191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV  270 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999737999997487099999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC
Q ss_conf             99999999999999846987888899999999999999999999999999999999999999844778997000100246
Q 001528          510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ  589 (1059)
Q Consensus       510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~  589 (1059)
                      ......++.+.+..++..+.++++.+++++.+...+..|+..++..+..+.++.++.+|+.++++.++..+.. ...+..
T Consensus       271 ~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~  349 (598)
T 3qf4_B          271 NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELR  349 (598)
T ss_dssp             HHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCC
T ss_conf             9999999999999999859978999999999999999999999999999999999999999997688777777-777777


Q ss_pred             CCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
Q ss_conf             899858998215750899998732341356338818999746899945789998377779760899839-----------
Q 001528          590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------  658 (1059)
Q Consensus       590 ~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g-----------  658 (1059)
                      ...+.++++|++|+|++  +.++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|+|.++|           
T Consensus       350 ~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~  427 (598)
T 3qf4_B          350 EVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL  427 (598)
T ss_dssp             SCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred             CCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHH
T ss_conf             77771899998997799--9860122279986998899989999969999999945857998089999998301889999


Q ss_pred             --EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             --2889836654346678888036999-9999999999990891677118899973015899989917999999999851
Q 001528          659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY  735 (1059)
Q Consensus       659 --~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRIaLARAly  735 (1059)
                        +++||+|+|++|++||+|||.+|++ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus       428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~  507 (598)
T 3qf4_B          428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL  507 (598)
T ss_dssp             HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             84108990798232463999974479999999999999996978889746453236422788987999999999999996


Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf             59979987177764578889999999997733998899984796520028968998399487822868998718248999
Q 001528          736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL  815 (1059)
Q Consensus       736 ~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~~~~~~~l  815 (1059)
                      ++|++++||||||+||+++++.+. +++....+++|+|+|||+++.+..||+|++|++|++++.|+|+|++++++.|+++
T Consensus       508 ~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~  586 (598)
T 3qf4_B          508 ANPKILILDEATSNVDTKTEKSIQ-AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYEL  586 (598)
T ss_dssp             TCCSEEEECCCCTTCCHHHHHHHH-HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf             499999998976679999999999-9999980899899994277899719989999899999877899998678779999


Q ss_pred             HHHHHH
Q ss_conf             997431
Q 001528          816 VNAHRD  821 (1059)
Q Consensus       816 ~~~~~~  821 (1059)
                      +..+..
T Consensus       587 ~~~~~~  592 (598)
T 3qf4_B          587 FTSQYG  592 (598)
T ss_dssp             HHHHHG
T ss_pred             HHHHHH
T ss_conf             999764


No 6  
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00  E-value=1  Score=662.17  Aligned_cols=550  Identities=19%  Similarity=0.238  Sum_probs=427.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999996687999999999999999999999999998502897246889999999999999999999999999999999
Q 001528          268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM  347 (1059)
Q Consensus       268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  347 (1059)
                      ++.+++.+++.++...++.++..++..+.|+++..+++...... .....+.+...+++..++..+......+...+.+.
T Consensus        14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (587)
T 3qf4_A           14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQ   92 (587)
T ss_dssp             GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999987369-87999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998548934678899889999999899999418889-99999999999999999999997899999999
Q 001528          348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL  426 (1059)
Q Consensus       348 ~ir~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~  426 (1059)
                      ++...++..+|+|.++++....++.++|+++|++++|++++.++... +..++..++.++.++++++...+..++..+++
T Consensus        93 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~  172 (587)
T 3qf4_A           93 NFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL  172 (587)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999788979976588899999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf             9999999999999999999999999999999999999338999982419999999999999999999999999999-999
Q 001528          427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTV  505 (1059)
Q Consensus       427 l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~  505 (1059)
                      +++..++...+.++..+..++..+..+++.+.+.|.++|+++||.|+||+.+.++..+..++..+...+....... ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (587)
T 3qf4_A          173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL  252 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999985599999862149999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999999999999984698788889999999999999999999999999999999999999984477899700010
Q 001528          506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR  585 (1059)
Q Consensus       506 ~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~  585 (1059)
                      ...........+.+.+..++..+.++++.+++++.++..+..|+..++..+..+.++.++.+|+.++++.++..++....
T Consensus       253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~  332 (587)
T 3qf4_A          253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNA  332 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999999999999849938999999999999999999999999999999999999999997689765788776


Q ss_pred             CCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------
Q ss_conf             0246899858998215750899998732341356338818999746899945789998377779760899839-------
Q 001528          586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------  658 (1059)
Q Consensus       586 ~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g-------  658 (1059)
                      .+.+.....|+++|++|+|+++ +.++|+|+||++++||.++|+||+|||||||+++|+|+++|.+|+|.++|       
T Consensus       333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~  411 (587)
T 3qf4_A          333 LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK  411 (587)
T ss_dssp             BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred             CCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
T ss_conf             5668888807997889984899-976421117998699889998999997999999992786699867989999834078


Q ss_pred             ------EEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             ------2889836654346678888036999-999999999999089167711889997301589998991799999999
Q 001528          659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA  731 (1059)
Q Consensus       659 ------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRIaLA  731 (1059)
                            +++||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|.+||||||||++||
T Consensus       412 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA  491 (587)
T 3qf4_A          412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA  491 (587)
T ss_dssp             HHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred             HHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99998413897789867675599998524889999999999999684999975653121275189899299999999999


Q ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCH
Q ss_conf             98515997998717776457888999999999773399889998479652002896899839948782286899871824
Q 001528          732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA  811 (1059)
Q Consensus       732 RAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~~~~  811 (1059)
                      ||++++|+|++||||||+||+++++++. +.+....+++|+|+|||+++.+..||+|++|++|++++.|+|+|++++++.
T Consensus       492 Ral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~  570 (587)
T 3qf4_A          492 RALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP  570 (587)
T ss_dssp             HHHHTCCSEEEEESCCTTSCHHHHHHHH-HHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf             9997299999997975447999999999-999986799989998227688981998999989989997889999867839


Q ss_pred             HHHHHHHHH
Q ss_conf             899999743
Q 001528          812 FEQLVNAHR  820 (1059)
Q Consensus       812 ~~~l~~~~~  820 (1059)
                      |+++++.+.
T Consensus       571 ~~~~~~~~~  579 (587)
T 3qf4_A          571 YREIYESQF  579 (587)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
T ss_conf             999999984


No 7  
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00  E-value=1  Score=633.91  Aligned_cols=541  Identities=18%  Similarity=0.237  Sum_probs=430.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99996687999999999999999999999999998502897246889999999999999999999999999999999999
Q 001528          271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR  350 (1059)
Q Consensus       271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir  350 (1059)
                      ..+.+++.++...++.++..++..+.|+++..+++...... .....+.++.++++..++..++.....+...+.+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (582)
T 3b60_A           19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV   97 (582)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999884368-65799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999985489346788998899999998999994188-8999999999999999999999997899999999999
Q 001528          351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI  429 (1059)
Q Consensus       351 ~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~l~i  429 (1059)
                      ..++..+|+|.++++....++.++|+++|++++|++.+.+.. ..+..++..++.++..+++++..-++.+++.++.+++
T Consensus        98 ~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l  177 (582)
T 3b60_A           98 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI  177 (582)
T ss_dssp             HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999809999978898658999999879999999999999999999999999999999809999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999338999982419999999999----999999999999999999999
Q 001528          430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAYGTV  505 (1059)
Q Consensus       430 ~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~----~R~~El~~l~~~~~~~~~~~~  505 (1059)
                      ...+...+.++.++..++..+..+++.+.+.|.++|+++||.+++|+.+.++..+    .++.+.+..+..........+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (582)
T 3b60_A          178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL  257 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999996199999837689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999999999999999984698788889999999999999999999999999999999999999984477899700010
Q 001528          506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR  585 (1059)
Q Consensus       506 ~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~  585 (1059)
                         .......++.+.+..++..+.++++.+++++.+...+..|+..++..+..+.++.++.+|+.++++.++..++.  .
T Consensus       258 ---~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~  332 (582)
T 3b60_A          258 ---IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--K  332 (582)
T ss_dssp             ---HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--C
T ss_pred             ---HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--C
T ss_conf             ---99999999999999999849998999999999999999999999999999999999999999997599876677--7


Q ss_pred             CCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------
Q ss_conf             0246899858998215750899998732341356338818999746899945789998377779760899839-------
Q 001528          586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------  658 (1059)
Q Consensus       586 ~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g-------  658 (1059)
                      .+.+.....++++|++|+|+++ +.++|+|+||++++||.++|+||+|||||||+++|+|.++|.+|+|.++|       
T Consensus       333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~  411 (582)
T 3b60_A          333 RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT  411 (582)
T ss_dssp             BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred             CCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC
T ss_conf             7777888847999889973999-974415615997699989998999998999999986106898976979999823069


Q ss_pred             ------EEEEECCCCCCCCCCHHHHHCCCC-C-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             ------288983665434667888803699-9-99999999999908916771188999730158999899179999999
Q 001528          659 ------SIAYVSQTSWIQSGSIRDNILYGK-P-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL  730 (1059)
Q Consensus       659 ------~iayv~Q~pwi~n~TIreNIlfg~-~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRIaL  730 (1059)
                            +++||||+|++|++|++|||.+|. + .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++|
T Consensus       412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i  491 (582)
T 3b60_A          412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI  491 (582)
T ss_dssp             HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred             HHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999608088068747787899998545999989999999999849799998450411451147988789999999999


Q ss_pred             HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf             99851599799871777645788899999999977339988999847965200289689983994878228689987182
Q 001528          731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT  810 (1059)
Q Consensus       731 ARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~~~  810 (1059)
                      |||++++|++++||||||+||+++++.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+|+|++++++
T Consensus       492 Aral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~  570 (582)
T 3b60_A          492 ARALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG  570 (582)
T ss_dssp             HHHHHHCCSEEEEETTTSSCCHHHHHHHH-HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf             99997289989997865557989999999-99999967997999945477898599899997888988458999987698


Q ss_pred             HHHHHHHHH
Q ss_conf             489999974
Q 001528          811 AFEQLVNAH  819 (1059)
Q Consensus       811 ~~~~l~~~~  819 (1059)
                      .|+++++.+
T Consensus       571 ~~~~~~~~q  579 (582)
T 3b60_A          571 VYAQLHKMQ  579 (582)
T ss_dssp             SHHHHHHHT
T ss_pred             HHHHHHHHH
T ss_conf             899999975


No 8  
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00  E-value=1  Score=633.35  Aligned_cols=546  Identities=21%  Similarity=0.226  Sum_probs=422.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999668799999999999999999999999999850289-7246-889999999999999999999999999999999
Q 001528          270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENL-QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM  347 (1059)
Q Consensus       270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~-~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  347 (1059)
                      .+.+.+++.++...++.++..++..+.|+++..+++..... .... ...+.++..+++..++..+......+...+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (595)
T 2yl4_A           12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQ   91 (595)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99887899999999999999999999999999999999735740266799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999985489346788998899999998999994188-8999999999999999999999997899999999
Q 001528          348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL  426 (1059)
Q Consensus       348 ~ir~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~  426 (1059)
                      ++...++..+|+|.++++....++.++|+++|++++|++++.+.. ..+..++..++.++.++++++..-++.++..++.
T Consensus        92 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~  171 (595)
T 2yl4_A           92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV  171 (595)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999819999977798488999999999999999999999999999999999999999819999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999338999982419999999999----999999999999999999
Q 001528          427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAY  502 (1059)
Q Consensus       427 l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~----~R~~El~~l~~~~~~~~~  502 (1059)
                      +++...+...+.++.++..++..+..++..+.+.|.++|+++||.+++|+.+.++..+    .++.+.+..+....... 
T Consensus       172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  250 (595)
T 2yl4_A          172 VPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG-  250 (595)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             9999999999999999999999999999999999998119999983756999999999999999999999999999999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             99999999999999999999984698788889999999999999999999999999999999999999984477899700
Q 001528          503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD  582 (1059)
Q Consensus       503 ~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~  582 (1059)
                        ............+.+.+..++.++.++++.+++++.+...+..|+..++..+..+.++.++.+|+.++++.++..++.
T Consensus       251 --~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~  328 (595)
T 2yl4_A          251 --ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN  328 (595)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             --999999999999999999999869978999999999999999999999999999999999999999998389766777


Q ss_pred             HHHCCCCCCCCC-EEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---
Q ss_conf             010024689985-8998215750899998732341356338818999746899945789998377779760899839---
Q 001528          583 VRRISLQKSDRS-VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---  658 (1059)
Q Consensus       583 ~~~~~~~~~~~~-i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g---  658 (1059)
                      ....+.....+. ++++|++|+|+.+++.++|+|+||++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|   
T Consensus       329 ~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i  408 (595)
T 2yl4_A          329 EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI  408 (595)
T ss_dssp             CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEH
T ss_conf             78777767899838999889985899888120112799849988999899999799999998258578983799999981


Q ss_pred             ----------EEEEECCCCCCCCCCHHHHHCCCCC----CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             ----------2889836654346678888036999----99999999999908916771188999730158999899179
Q 001528          659 ----------SIAYVSQTSWIQSGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ  724 (1059)
Q Consensus       659 ----------~iayv~Q~pwi~n~TIreNIlfg~~----~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQ  724 (1059)
                                +++||+|+|+++++|++|||.+|.+    .++++++++++.++++++++.+|+|++|.+||+|.+|||||
T Consensus       409 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq  488 (595)
T 2yl4_A          409 RQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ  488 (595)
T ss_dssp             TTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred             HHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf             11799999732289836883268779999840587766568999999999869799997473201350168878689999


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHH
Q ss_conf             99999999851599799871777645788899999999977339988999847965200289689983994878228689
Q 001528          725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE  804 (1059)
Q Consensus       725 kQRIaLARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~e  804 (1059)
                      |||++||||++++|++++||||||+||+++++.+. +.+....+++|+|+|||+++.+..||+|++|++|++++.|+|+|
T Consensus       489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~  567 (595)
T 2yl4_A          489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQ-EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEE  567 (595)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH-HHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHH
T ss_conf             99999999997599999998866689989999999-99999965997999946878997599899998998999788999


Q ss_pred             HHHC-CCHHHHHHHHH
Q ss_conf             9871-82489999974
Q 001528          805 LLLA-GTAFEQLVNAH  819 (1059)
Q Consensus       805 Ll~~-~~~~~~l~~~~  819 (1059)
                      ++++ ++.|+++++.+
T Consensus       568 l~~~~~~~~~~~~~~q  583 (595)
T 2yl4_A          568 LLSKPNGIYRKLMNKQ  583 (595)
T ss_dssp             ------C---------
T ss_pred             HHHCCCHHHHHHHHHH
T ss_conf             9747872999999974


No 9  
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00  E-value=1  Score=632.41  Aligned_cols=542  Identities=18%  Similarity=0.234  Sum_probs=431.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999668799999999999999999999999999850289724688999999999999999999999999999999999
Q 001528          270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM  349 (1059)
Q Consensus       270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i  349 (1059)
                      .+.+.+++.++...++.++..++..+.|+++..+++...... .....+.++.++++..++..+......+...+.+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (582)
T 3b5x_A           18 TYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNV   96 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998899999999999999999999999999999999986468-6679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999985489346788998899999998999994188-899999999999999999999999789999999999
Q 001528          350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL  428 (1059)
Q Consensus       350 r~~l~~~iy~K~l~l~~~~~~~~~~G~ivnl~s~D~~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~l~  428 (1059)
                      ...++..+|+|.++++....++.++|+++|++++|++++.+.. ..+..++..++.++.++++++..-++.++..++.++
T Consensus        97 ~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~  176 (582)
T 3b5x_A           97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP  176 (582)
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986999997789878999999988999999999999999999999999999999982999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999338999982419999999999----99999999999999999999
Q 001528          429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAYGT  504 (1059)
Q Consensus       429 i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~----~R~~El~~l~~~~~~~~~~~  504 (1059)
                      +...+...+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+    .++.+.+..+..........
T Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (582)
T 3b5x_A          177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ  256 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999519999970875999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             99999999999999999998469878888999999999999999999999999999999999999998447789970001
Q 001528          505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR  584 (1059)
Q Consensus       505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~  584 (1059)
                      +   ........+.+.+..++.++.++++.+++++.++..+..|+..++..+..+.++.++.+|+.++++.++..++.  
T Consensus       257 ~---~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--  331 (582)
T 3b5x_A          257 M---IASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--  331 (582)
T ss_pred             H---HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf             9---99999999999999999859988999999999999999999999999999999999999999997589767777--


Q ss_pred             HCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------
Q ss_conf             00246899858998215750899998732341356338818999746899945789998377779760899839------
Q 001528          585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------  658 (1059)
Q Consensus       585 ~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g------  658 (1059)
                      ..+.+.....++++|++|+|+++ +.++|+|+||++++||.++|+||+|||||||+++|+|.++|.+|+|.++|      
T Consensus       332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~  410 (582)
T 3b5x_A          332 KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY  410 (582)
T ss_pred             CCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHC
T ss_conf             77777788828999989972899-86540041699879998999899999799999999657789998798999985638


Q ss_pred             -------EEEEECCCCCCCCCCHHHHHCCCC-C-CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             -------288983665434667888803699-9-9999999999990891677118899973015899989917999999
Q 001528          659 -------SIAYVSQTSWIQSGSIRDNILYGK-P-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ  729 (1059)
Q Consensus       659 -------~iayv~Q~pwi~n~TIreNIlfg~-~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRIa  729 (1059)
                             +++||||+|++|++|++|||.+|. + .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++
T Consensus       411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~  490 (582)
T 3b5x_A          411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA  490 (582)
T ss_pred             CHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf             89999648589827990531029999856688999999999999987989999847653345106888847999999999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf             99985159979987177764578889999999997733998899984796520028968998399487822868998718
Q 001528          730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG  809 (1059)
Q Consensus       730 LARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~~  809 (1059)
                      ||||++++|++++||||||+||+++++.+. +.+....+++|+|+|||+++.+..||+|++|++|++++.|+|+|+++.+
T Consensus       491 iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~  569 (582)
T 3b5x_A          491 IARALLRDAPVLILDEATSALDTESERAIQ-AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD  569 (582)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf             999997499999997854468999999999-9999972899899993688999819989999899899977899998488


Q ss_pred             CHHHHHHHHH
Q ss_conf             2489999974
Q 001528          810 TAFEQLVNAH  819 (1059)
Q Consensus       810 ~~~~~l~~~~  819 (1059)
                      +.|+++++.+
T Consensus       570 ~~~~~~~~~q  579 (582)
T 3b5x_A          570 GAYAQLHRIQ  579 (582)
T ss_pred             CHHHHHHHHH
T ss_conf             5899999986


No 10 
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00  E-value=1  Score=595.74  Aligned_cols=548  Identities=20%  Similarity=0.222  Sum_probs=397.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9966879999999999999999999999999985028972---4688999999999999999999999999999999999
Q 001528          273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM  349 (1059)
Q Consensus       273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~---~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i  349 (1059)
                      +.+++.++...++.++...+....|+++..+++.......   .......+...+++..++..+......+...+.+.++
T Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~  780 (1284)
T 3g5u_A          701 STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEIL  780 (1284)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             51579999999999999999999999999999998556850336779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999998548934678--899889999999899999418889-99999999999999999999997899999999
Q 001528          350 RSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL  426 (1059)
Q Consensus       350 r~~l~~~iy~K~l~l~~~~~~--~~~~G~ivnl~s~D~~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~  426 (1059)
                      ...++..+|+|.++++...++  ++++|+++|+++.|++.+.+.... +..+....+.++.++++++..-...++..+++
T Consensus       781 ~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~  860 (1284)
T 3g5u_A          781 TKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAI  860 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999983998887578998899999999999999999999999999999999999999999969999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf             9999999999999999999999999999999999999338999982419999999999999999999999999999-999
Q 001528          427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTV  505 (1059)
Q Consensus       427 l~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~gik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~  505 (1059)
                      +.+.........+...+...+..+..++..+...|.++|+++||.+++|+.+.++..+..+...+...+....... ..+
T Consensus       861 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  940 (1284)
T 3g5u_A          861 VPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF  940 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999998899999846599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHH
Q ss_conf             9999999999999999998469878888999999999999999999999999999999999999998447789970-001
Q 001528          506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND-DVR  584 (1059)
Q Consensus       506 ~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~-~~~  584 (1059)
                      ......+....+.+.+..++..+.++.+.++.++.++.....|+..+......+.++..+.+|+.++++.++..+. ...
T Consensus       941 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 1020 (1284)
T 3g5u_A          941 TQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ 1020 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999999999999909806999999999999999999999999999999999999999998388766665556


Q ss_pred             HCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------
Q ss_conf             00246899858998215750899998732341356338818999746899945789998377779760899839------
Q 001528          585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------  658 (1059)
Q Consensus       585 ~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~sGSGKSTLl~allGe~~~~~G~I~v~g------  658 (1059)
                      ........+.++++|++|+|+..++.++|+|+||++++||.++|+|++|||||||+++|.|.++|.+|+|.++|      
T Consensus      1021 ~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A         1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp             CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
T ss_conf             65456777857999989977999987002030599769988999889999789999999468678997798999980007


Q ss_pred             -------EEEEECCCCCCCCCCHHHHHCCCCC---CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             -------2889836654346678888036999---999999999999089167711889997301589998991799999
Q 001528          659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI  728 (1059)
Q Consensus       659 -------~iayv~Q~pwi~n~TIreNIlfg~~---~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQkQRI  728 (1059)
                             +++||||+|.+|++||||||.+|.+   .++++.+++++.+++++.++.+|+|++|.|||+|.+|||||||||
T Consensus      1101 ~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A         1101 NVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp             CHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred             CHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             89999702689877874066669999746687789999999999998395999972704245611788893389999999


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             99998515997998717776457888999999999773399889998479652002896899839948782286899871
Q 001528          729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA  808 (1059)
Q Consensus       729 aLARAly~~~dIllLDDp~SAlD~~t~~~I~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~e~Gt~~eLl~~  808 (1059)
                      +||||++++|+|+|||||||+||.++++.|. +.+....+|+|+|+|||+++.+..||+|++|++|+|++.|+|+||+++
T Consensus      1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~-~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A         1181 AIARALVRQPHILLLDEATSALDTESEKVVQ-EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp             HHHHHHHHCCSSEEEESCSSSCCHHHHHHHH-HHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             9999997499999986875557999999999-999986799989999558799980998999989989997789999847


Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8248999997431
Q 001528          809 GTAFEQLVNAHRD  821 (1059)
Q Consensus       809 ~~~~~~l~~~~~~  821 (1059)
                      ++.|+++++.+..
T Consensus      1260 ~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A         1260 KGIYFSMVSVQAG 1272 (1284)
T ss_dssp             CSHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHH
T ss_conf             7779999999761


Done!