Query 001529
Match_columns 1059
No_of_seqs 407 out of 1906
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 1E-323 0E+00 2864.0 82.6 1057 1-1059 27-1085(1085)
2 PLN02436 cellulose synthase A 100.0 2E-315 5E-320 2781.1 81.9 1046 1-1059 27-1093(1094)
3 PLN02638 cellulose synthase A 100.0 1E-314 2E-319 2785.5 83.2 1049 1-1059 8-1079(1079)
4 PLN02915 cellulose synthase A 100.0 3E-300 6E-305 2654.3 78.6 1000 6-1059 11-1044(1044)
5 PLN02189 cellulose synthase 100.0 2E-298 5E-303 2637.2 82.0 1002 1-1059 25-1040(1040)
6 PLN02195 cellulose synthase A 100.0 5E-286 1E-290 2520.0 79.4 971 7-1059 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 7E-248 1E-252 2202.2 73.0 926 5-1046 119-1126(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-221 3E-226 1929.1 48.7 719 332-1053 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 9E-203 2E-207 1772.4 60.0 726 234-1037 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 6E-194 1E-198 1705.8 63.4 707 233-1035 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 2.7E-67 5.9E-72 639.8 48.7 491 253-1011 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 3.4E-67 7.3E-72 640.2 46.1 474 254-1011 188-674 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 2.6E-45 5.6E-50 322.6 4.3 80 2-81 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 6.6E-36 1.4E-40 361.5 41.6 357 251-849 40-414 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 6.1E-34 1.3E-38 309.0 23.2 182 497-806 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 5.2E-31 1.1E-35 301.0 27.9 233 329-810 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 5.4E-29 1.2E-33 289.3 32.5 232 327-811 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 4.8E-28 1E-32 281.2 33.0 289 326-863 45-342 (439)
19 PRK11204 N-glycosyltransferase 100.0 3.1E-27 6.7E-32 271.0 34.0 232 326-811 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 5E-25 1.1E-29 259.4 32.8 265 328-836 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 1.9E-25 4.2E-30 232.5 20.6 229 330-808 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 8.3E-25 1.8E-29 266.6 28.9 242 327-810 60-335 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 7E-25 1.5E-29 230.7 21.2 228 330-804 1-232 (232)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 3E-23 6.6E-28 217.8 22.8 173 499-810 58-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 2.5E-23 5.4E-28 221.1 21.1 233 330-810 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 2.3E-23 4.9E-28 217.3 8.9 224 330-803 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 2.3E-19 4.9E-24 217.4 29.4 171 513-809 140-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.8 1.1E-19 2.3E-24 207.2 24.7 235 327-804 38-272 (373)
29 cd04190 Chitin_synth_C C-termi 99.8 3.7E-21 8.1E-26 206.2 11.9 52 753-806 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 2.5E-19 5.4E-24 185.3 18.4 226 334-803 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 8E-19 1.7E-23 181.0 17.9 194 330-802 1-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 6.1E-18 1.3E-22 177.0 17.8 58 513-579 63-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.8 3.4E-17 7.5E-22 173.6 19.9 128 326-579 25-152 (251)
34 COG2943 MdoH Membrane glycosyl 99.7 8E-15 1.7E-19 167.9 38.0 213 498-850 213-435 (736)
35 TIGR03469 HonB hopene-associat 99.7 3.3E-16 7E-21 179.5 26.9 134 326-573 36-170 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.7 2.5E-15 5.5E-20 157.5 20.9 54 755-810 180-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 1E-15 2.3E-20 156.8 15.1 138 534-804 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 5.4E-14 1.2E-18 145.2 14.0 115 498-619 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 6.1E-13 1.3E-17 135.7 11.8 62 512-579 61-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 4.4E-12 9.6E-17 129.6 17.3 122 330-575 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 1.2E-11 2.6E-16 126.6 16.8 66 499-578 57-123 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 3.1E-11 6.8E-16 124.9 11.0 154 512-802 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 1.9E-10 4E-15 116.0 16.1 55 514-577 62-117 (202)
44 cd02510 pp-GalNAc-T pp-GalNAc- 99.2 7.3E-10 1.6E-14 122.3 17.3 109 334-559 2-110 (299)
45 cd04196 GT_2_like_d Subfamily 99.1 7.4E-10 1.6E-14 113.6 15.4 120 333-577 1-121 (214)
46 cd02522 GT_2_like_a GT_2_like_ 99.1 2.3E-09 5E-14 111.2 17.5 40 332-377 1-40 (221)
47 cd04186 GT_2_like_c Subfamily 99.1 2E-09 4.3E-14 105.4 15.8 51 513-572 60-111 (166)
48 cd06420 GT2_Chondriotin_Pol_N 99.1 3.2E-09 6.9E-14 106.9 17.4 52 499-560 55-106 (182)
49 PLN02726 dolichyl-phosphate be 99.0 8.5E-09 1.8E-13 110.5 18.5 60 499-572 70-129 (243)
50 PF14570 zf-RING_4: RING/Ubox 99.0 1.2E-10 2.7E-15 96.1 2.7 48 13-63 1-48 (48)
51 cd06913 beta3GnTL1_like Beta 1 99.0 9.1E-09 2E-13 107.8 16.2 42 334-380 1-42 (219)
52 cd02526 GT2_RfbF_like RfbF is 99.0 4.3E-09 9.3E-14 110.6 13.7 65 499-575 49-117 (237)
53 cd06423 CESA_like CESA_like is 99.0 6E-09 1.3E-13 100.8 13.3 63 499-575 55-118 (180)
54 PF03142 Chitin_synth_2: Chiti 99.0 1.1E-07 2.3E-12 113.4 26.4 53 754-808 324-378 (527)
55 cd06442 DPM1_like DPM1_like re 99.0 2.5E-08 5.5E-13 103.6 18.1 60 499-572 55-114 (224)
56 cd04185 GT_2_like_b Subfamily 99.0 1.2E-08 2.6E-13 105.0 15.0 60 499-569 53-112 (202)
57 PF00535 Glycos_transf_2: Glyc 98.9 1.7E-09 3.7E-14 104.9 6.8 110 498-619 54-165 (169)
58 cd04188 DPG_synthase DPG_synth 98.7 1.5E-07 3.3E-12 98.0 14.1 62 499-574 59-120 (211)
59 cd04179 DPM_DPG-synthase_like 98.7 2.3E-07 5.1E-12 93.4 12.5 65 499-577 56-120 (185)
60 TIGR01556 rhamnosyltran L-rham 98.6 7.2E-07 1.6E-11 97.6 16.6 68 498-575 46-113 (281)
61 PRK10018 putative glycosyl tra 98.6 1.3E-06 2.9E-11 97.1 18.1 52 498-559 61-112 (279)
62 PRK10073 putative glycosyl tra 98.6 1.1E-06 2.3E-11 99.7 17.4 110 328-560 4-113 (328)
63 PRK10063 putative glycosyl tra 98.6 2.1E-06 4.5E-11 93.6 17.9 48 330-381 1-49 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.5 4E-06 8.6E-11 79.2 14.1 52 512-572 62-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.4 3E-06 6.5E-11 85.9 12.7 104 498-620 56-160 (181)
66 PF10111 Glyco_tranf_2_2: Glyc 98.3 1.3E-05 2.8E-10 88.7 17.0 63 513-581 74-136 (281)
67 KOG2571 Chitin synthase/hyalur 98.3 1.6E-05 3.4E-10 98.6 17.8 50 754-805 549-598 (862)
68 COG1216 Predicted glycosyltran 98.3 2.4E-05 5.1E-10 87.6 17.5 69 497-577 56-126 (305)
69 PTZ00260 dolichyl-phosphate be 98.2 2.9E-05 6.4E-10 88.4 16.9 51 499-559 139-189 (333)
70 PRK13915 putative glucosyl-3-p 98.1 1.9E-05 4.1E-10 89.0 11.8 51 513-571 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.5 0.0009 2E-08 76.1 13.5 40 514-558 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.4 0.0053 1.1E-07 70.3 16.6 159 512-802 155-314 (431)
73 COG0463 WcaA Glycosyltransfera 97.0 0.0054 1.2E-07 58.8 10.8 46 329-380 2-47 (291)
74 cd02511 Beta4Glucosyltransfera 96.9 0.0079 1.7E-07 64.3 11.6 42 514-560 58-99 (229)
75 COG5175 MOT2 Transcriptional r 96.6 0.00079 1.7E-08 75.3 1.7 49 11-62 15-63 (480)
76 TIGR00570 cdk7 CDK-activating 95.4 0.016 3.4E-07 65.7 4.5 60 9-70 2-61 (309)
77 cd02514 GT13_GLCNAC-TI GT13_GL 95.4 0.16 3.5E-06 58.5 12.8 41 333-377 3-43 (334)
78 PF14446 Prok-RING_1: Prokaryo 94.9 0.019 4E-07 49.4 2.4 46 9-62 4-51 (54)
79 PF02364 Glucan_synthase: 1,3- 94.0 1.1 2.5E-05 56.7 16.0 111 696-841 380-492 (817)
80 cd00162 RING RING-finger (Real 88.1 0.49 1.1E-05 36.9 2.9 44 12-61 1-44 (45)
81 KOG2978 Dolichol-phosphate man 88.1 3 6.5E-05 44.8 9.4 52 498-559 64-115 (238)
82 PF05290 Baculo_IE-1: Baculovi 85.3 0.53 1.1E-05 47.5 2.1 52 11-66 81-135 (140)
83 smart00504 Ubox Modified RING 81.8 1.5 3.2E-05 37.6 3.3 44 12-63 3-46 (63)
84 PRK14559 putative protein seri 75.9 1.4 3.1E-05 55.1 1.9 46 12-63 3-52 (645)
85 PHA02929 N1R/p28-like protein; 75.2 3.3 7.2E-05 45.9 4.2 55 8-63 172-227 (238)
86 KOG2977 Glycosyltransferase [G 72.6 20 0.00044 40.9 9.5 57 331-401 68-130 (323)
87 PF13639 zf-RING_2: Ring finge 71.5 2.8 6E-05 33.9 2.0 43 12-59 2-44 (44)
88 PF14447 Prok-RING_4: Prokaryo 71.3 2 4.2E-05 37.4 1.0 48 8-65 5-52 (55)
89 PHA02862 5L protein; Provision 68.9 3 6.4E-05 42.9 1.9 49 10-64 2-54 (156)
90 KOG0823 Predicted E3 ubiquitin 68.2 3.3 7.2E-05 45.4 2.2 45 11-63 48-95 (230)
91 PF03966 Trm112p: Trm112p-like 67.8 1.4 2.9E-05 39.4 -0.6 26 41-66 42-67 (68)
92 PHA02825 LAP/PHD finger-like p 67.8 4.3 9.3E-05 42.4 2.8 52 8-65 6-61 (162)
93 smart00659 RPOLCX RNA polymera 67.7 3.4 7.4E-05 34.3 1.7 27 11-39 3-29 (44)
94 KOG3737 Predicted polypeptide 66.9 22 0.00047 42.1 8.4 48 325-375 150-197 (603)
95 PF03604 DNA_RNApol_7kD: DNA d 66.6 4.2 9E-05 31.7 1.9 26 12-39 2-27 (32)
96 KOG2068 MOT2 transcription fac 66.1 4.5 9.8E-05 46.5 2.9 52 10-65 249-300 (327)
97 PF13712 Glyco_tranf_2_5: Glyc 65.4 19 0.00042 39.1 7.5 58 499-569 31-89 (217)
98 PF02318 FYVE_2: FYVE-type zin 63.9 1.5 3.4E-05 43.2 -1.2 48 8-58 52-100 (118)
99 smart00184 RING Ring finger. E 62.5 6.6 0.00014 29.2 2.4 39 13-58 1-39 (39)
100 KOG3800 Predicted E3 ubiquitin 60.8 6.4 0.00014 44.6 2.8 53 11-65 1-53 (300)
101 KOG2932 E3 ubiquitin ligase in 60.8 5.5 0.00012 45.3 2.3 46 22-67 83-138 (389)
102 PF13923 zf-C3HC4_2: Zinc fing 59.1 9.3 0.0002 30.2 2.7 39 13-58 1-39 (39)
103 PRK00420 hypothetical protein; 55.8 5.4 0.00012 39.5 1.0 29 30-64 24-52 (112)
104 PF00097 zf-C3HC4: Zinc finger 55.0 9.4 0.0002 30.1 2.1 40 13-58 1-41 (41)
105 PF13920 zf-C3HC4_3: Zinc fing 54.4 12 0.00025 31.2 2.7 46 11-64 3-49 (50)
106 KOG0006 E3 ubiquitin-protein l 54.4 10 0.00022 43.4 3.0 39 6-45 311-352 (446)
107 smart00249 PHD PHD zinc finger 54.2 9 0.0002 30.1 1.9 43 12-58 1-47 (47)
108 PF14471 DUF4428: Domain of un 54.0 8.2 0.00018 33.0 1.7 28 12-45 1-28 (51)
109 PF07851 TMPIT: TMPIT-like pro 53.9 2.7E+02 0.0059 32.7 14.3 19 889-907 173-191 (330)
110 PF07282 OrfB_Zn_ribbon: Putat 51.7 11 0.00023 33.4 2.2 33 9-42 27-59 (69)
111 PRK15103 paraquat-inducible me 51.2 12 0.00025 44.9 3.0 31 27-66 219-249 (419)
112 smart00291 ZnF_ZZ Zinc-binding 51.1 15 0.00032 30.2 2.7 37 10-51 4-41 (44)
113 COG4818 Predicted membrane pro 50.9 95 0.0021 30.2 8.3 87 907-1019 5-91 (105)
114 COG5114 Histone acetyltransfer 49.2 6.3 0.00014 45.0 0.4 36 12-51 7-43 (432)
115 PHA02926 zinc finger-like prot 48.9 18 0.00039 39.9 3.7 62 7-68 167-235 (242)
116 PRK12495 hypothetical protein; 48.7 10 0.00022 41.6 1.8 29 29-64 42-70 (226)
117 KOG0916 1,3-beta-glucan syntha 46.1 3.8E+02 0.0082 37.0 15.1 81 754-843 1173-1258(1679)
118 TIGR00155 pqiA_fam integral me 45.3 13 0.00029 44.2 2.3 30 28-65 214-243 (403)
119 PRK04023 DNA polymerase II lar 44.7 15 0.00032 48.0 2.6 45 8-63 624-674 (1121)
120 KOG0457 Histone acetyltransfer 43.7 10 0.00023 45.0 1.1 58 10-74 14-74 (438)
121 PRK07220 DNA topoisomerase I; 43.5 14 0.0003 47.4 2.2 48 11-60 590-643 (740)
122 PLN03208 E3 ubiquitin-protein 43.3 25 0.00055 38.0 3.8 49 8-63 16-79 (193)
123 PRK00398 rpoP DNA-directed RNA 43.3 15 0.00033 30.3 1.7 27 12-39 5-31 (46)
124 KOG3736 Polypeptide N-acetylga 42.3 34 0.00074 42.7 5.1 49 326-377 138-186 (578)
125 cd00350 rubredoxin_like Rubred 42.2 11 0.00023 29.3 0.6 20 44-63 9-28 (33)
126 PF06906 DUF1272: Protein of u 40.6 30 0.00066 30.4 3.1 48 11-64 6-53 (57)
127 COG0551 TopA Zn-finger domain 40.3 21 0.00045 36.1 2.4 49 8-60 15-68 (140)
128 KOG2068 MOT2 transcription fac 39.9 13 0.00027 43.1 0.9 30 36-65 1-32 (327)
129 cd02335 ZZ_ADA2 Zinc finger, Z 38.8 26 0.00057 29.5 2.4 31 12-46 2-33 (49)
130 cd02249 ZZ Zinc finger, ZZ typ 37.7 26 0.00055 29.0 2.2 31 12-47 2-33 (46)
131 COG4858 Uncharacterized membra 37.2 1.9E+02 0.0042 31.4 8.9 62 958-1019 97-161 (226)
132 PF01155 HypA: Hydrogenase exp 36.2 8.5 0.00018 37.9 -1.0 30 29-65 70-99 (113)
133 PF07649 C1_3: C1-like domain; 35.7 22 0.00048 26.8 1.4 28 12-43 2-29 (30)
134 TIGR02921 PEP_integral PEP-CTE 35.7 8.1E+02 0.017 31.2 14.7 27 836-862 45-71 (952)
135 PRK12380 hydrogenase nickel in 35.7 12 0.00027 36.8 0.1 26 29-61 70-95 (113)
136 TIGR02443 conserved hypothetic 34.8 26 0.00057 31.1 1.9 31 8-38 7-40 (59)
137 KOG1941 Acetylcholine receptor 34.6 12 0.00027 43.8 -0.2 69 10-81 365-439 (518)
138 COG1996 RPC10 DNA-directed RNA 34.5 20 0.00044 30.7 1.1 29 10-39 6-34 (49)
139 PF14634 zf-RING_5: zinc-RING 34.4 40 0.00086 27.4 2.8 43 13-60 2-44 (44)
140 cd00730 rubredoxin Rubredoxin; 34.3 14 0.0003 31.6 0.1 8 54-61 36-43 (50)
141 TIGR00599 rad18 DNA repair pro 33.8 31 0.00066 41.2 2.8 45 11-63 27-71 (397)
142 PRK14973 DNA topoisomerase I; 33.0 31 0.00068 45.4 3.0 48 11-61 589-644 (936)
143 PF03452 Anp1: Anp1; InterPro 32.6 5.1E+02 0.011 29.7 12.0 40 516-556 128-167 (269)
144 KOG0311 Predicted E3 ubiquitin 32.6 6.8 0.00015 45.4 -2.6 45 12-62 45-89 (381)
145 PRK00564 hypA hydrogenase nick 32.3 18 0.00038 36.0 0.5 28 30-64 72-100 (117)
146 PRK11827 hypothetical protein; 31.9 32 0.00069 30.7 1.9 34 38-71 12-45 (60)
147 PF00628 PHD: PHD-finger; Int 31.8 35 0.00076 28.2 2.1 45 12-60 1-50 (51)
148 TIGR01562 FdhE formate dehydro 31.7 43 0.00094 38.7 3.5 42 10-60 184-232 (305)
149 cd02336 ZZ_RSC8 Zinc finger, Z 31.3 42 0.00091 28.2 2.5 36 12-52 2-38 (45)
150 PF09484 Cas_TM1802: CRISPR-as 31.0 25 0.00054 43.8 1.6 40 7-46 195-250 (593)
151 PF11238 DUF3039: Protein of u 30.9 15 0.00032 32.4 -0.3 14 52-65 44-57 (58)
152 PF03884 DUF329: Domain of unk 30.7 29 0.00062 30.7 1.4 34 48-81 14-53 (57)
153 PRK11595 DNA utilization prote 30.4 34 0.00073 37.4 2.3 39 10-61 5-43 (227)
154 PRK14503 mannosyl-3-phosphogly 30.2 1.2E+02 0.0025 36.1 6.5 41 512-555 142-182 (393)
155 PRK07219 DNA topoisomerase I; 30.0 31 0.00066 44.9 2.2 53 10-65 688-746 (822)
156 COG4739 Uncharacterized protei 29.8 26 0.00056 36.4 1.2 45 19-63 77-121 (182)
157 TIGR00100 hypA hydrogenase nic 29.7 23 0.00051 35.0 0.9 28 30-64 71-98 (115)
158 PF13704 Glyco_tranf_2_4: Glyc 29.0 3E+02 0.0066 25.2 8.1 27 515-544 58-84 (97)
159 PRK03681 hypA hydrogenase nick 28.9 22 0.00047 35.2 0.5 27 30-63 71-98 (114)
160 PF15050 SCIMP: SCIMP protein 28.6 58 0.0013 32.8 3.3 40 897-937 2-46 (133)
161 TIGR00595 priA primosomal prot 28.3 29 0.00064 42.5 1.6 49 23-71 206-259 (505)
162 COG1813 Predicted transcriptio 27.7 45 0.00097 35.3 2.5 37 13-53 6-42 (165)
163 PF13248 zf-ribbon_3: zinc-rib 27.1 20 0.00042 26.4 -0.2 15 47-61 11-25 (26)
164 PRK14890 putative Zn-ribbon RN 27.0 73 0.0016 28.4 3.3 50 9-60 6-56 (59)
165 COG4391 Uncharacterized protei 26.5 26 0.00057 31.3 0.5 17 48-64 44-60 (62)
166 PF13896 Glyco_transf_49: Glyc 26.5 72 0.0016 36.8 4.2 39 530-569 126-164 (317)
167 PF13240 zinc_ribbon_2: zinc-r 26.2 21 0.00046 25.8 -0.1 13 49-61 10-22 (23)
168 PF08274 PhnA_Zn_Ribbon: PhnA 26.1 28 0.00061 26.9 0.5 25 11-37 3-27 (30)
169 COG4707 Uncharacterized protei 25.4 25 0.00054 34.0 0.2 52 434-506 20-78 (107)
170 PRK06319 DNA topoisomerase I/S 25.3 47 0.001 43.5 2.6 55 9-66 591-659 (860)
171 cd03031 GRX_GRX_like Glutaredo 25.1 37 0.0008 35.1 1.4 43 9-60 98-141 (147)
172 PRK14873 primosome assembly pr 24.8 49 0.0011 42.1 2.6 11 52-62 422-432 (665)
173 TIGR02460 osmo_MPGsynth mannos 24.4 1.7E+02 0.0037 34.6 6.5 41 512-555 141-181 (381)
174 TIGR00155 pqiA_fam integral me 24.1 50 0.0011 39.5 2.4 36 27-66 11-47 (403)
175 PRK14714 DNA polymerase II lar 24.0 42 0.00092 45.0 1.9 48 11-65 668-722 (1337)
176 PF07754 DUF1610: Domain of un 24.0 65 0.0014 23.8 2.0 24 13-37 1-24 (24)
177 TIGR01206 lysW lysine biosynth 23.8 54 0.0012 28.6 1.9 13 11-23 3-15 (54)
178 cd00065 FYVE FYVE domain; Zinc 23.7 41 0.0009 28.4 1.2 38 10-50 2-39 (57)
179 KOG3507 DNA-directed RNA polym 23.7 36 0.00078 30.2 0.8 27 11-39 21-47 (62)
180 PF00643 zf-B_box: B-box zinc 23.5 59 0.0013 25.9 2.0 32 9-47 2-33 (42)
181 KOG1785 Tyrosine kinase negati 23.5 49 0.0011 39.2 2.1 47 10-63 369-416 (563)
182 PF04123 DUF373: Domain of unk 23.3 3.4E+02 0.0074 32.1 8.8 36 978-1014 286-321 (344)
183 PF12773 DZR: Double zinc ribb 23.3 56 0.0012 27.1 1.9 12 10-21 12-23 (50)
184 PTZ00293 thymidine kinase; Pro 23.3 39 0.00084 37.1 1.2 35 11-45 138-177 (211)
185 PRK15103 paraquat-inducible me 23.2 39 0.00086 40.5 1.3 34 30-66 11-44 (419)
186 COG2835 Uncharacterized conser 23.2 33 0.00071 30.6 0.5 42 29-75 8-49 (60)
187 PRK12438 hypothetical protein; 23.1 1.1E+03 0.024 31.8 14.0 48 989-1036 257-304 (991)
188 PF09623 Cas_NE0113: CRISPR-as 22.7 5.2E+02 0.011 28.8 9.6 60 334-402 4-63 (224)
189 KOG2177 Predicted E3 ubiquitin 22.5 44 0.00095 35.7 1.4 44 9-60 12-55 (386)
190 PF13719 zinc_ribbon_5: zinc-r 22.2 38 0.00082 27.0 0.6 11 54-64 4-14 (37)
191 PRK03824 hypA hydrogenase nick 22.1 32 0.0007 35.0 0.3 12 50-61 105-116 (135)
192 KOG4217 Nuclear receptors of t 22.1 31 0.00068 41.6 0.2 11 9-19 268-278 (605)
193 COG1480 Predicted membrane-ass 22.0 7.7E+02 0.017 31.8 11.8 25 989-1013 439-463 (700)
194 PF09526 DUF2387: Probable met 21.9 59 0.0013 29.8 1.9 31 8-38 6-39 (71)
195 smart00744 RINGv The RING-vari 21.9 1.1E+02 0.0024 25.9 3.3 45 12-59 1-49 (49)
196 KOG2792 Putative cytochrome C 21.6 61 0.0013 36.7 2.2 40 313-353 159-198 (280)
197 cd02340 ZZ_NBR1_like Zinc fing 21.5 72 0.0016 26.3 2.1 29 12-45 2-31 (43)
198 COG2888 Predicted Zn-ribbon RN 21.4 89 0.0019 28.0 2.7 48 10-59 9-57 (61)
199 PF11781 RRN7: RNA polymerase 21.4 56 0.0012 26.1 1.4 27 9-37 5-33 (36)
200 KOG1609 Protein involved in mR 21.4 60 0.0013 36.4 2.2 59 10-69 78-140 (323)
201 TIGR02556 cas_TM1802 CRISPR-as 21.3 60 0.0013 40.5 2.4 41 10-51 170-222 (555)
202 COG1615 Uncharacterized conser 21.2 1.4E+03 0.03 29.9 13.7 48 989-1036 234-281 (885)
203 PF13717 zinc_ribbon_4: zinc-r 21.2 41 0.00089 26.7 0.6 11 54-64 4-14 (36)
204 COG0551 TopA Zn-finger domain 20.9 46 0.001 33.6 1.1 51 9-63 59-112 (140)
205 PRK06393 rpoE DNA-directed RNA 20.8 46 0.00099 30.1 0.9 23 28-61 4-26 (64)
206 PF04641 Rtf2: Rtf2 RING-finge 20.5 83 0.0018 35.3 3.1 50 10-65 113-163 (260)
207 KOG0320 Predicted E3 ubiquitin 20.5 78 0.0017 34.0 2.6 49 7-61 128-176 (187)
208 PF03833 PolC_DP2: DNA polymer 20.3 34 0.00074 44.1 0.0 42 12-63 657-703 (900)
209 PF03107 C1_2: C1 domain; Int 20.2 71 0.0015 24.2 1.7 28 12-43 2-29 (30)
210 KOG2857 Predicted MYND Zn-fing 20.1 55 0.0012 33.8 1.4 44 10-65 5-49 (157)
211 PRK05580 primosome assembly pr 20.0 50 0.0011 42.0 1.4 44 12-67 383-436 (679)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=9.9e-324 Score=2864.04 Aligned_cols=1057 Identities=94% Similarity=1.545 Sum_probs=988.6
Q ss_pred CCCCCCCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCcc
Q 001529 1 MPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDI 80 (1059)
Q Consensus 1 ~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~ 80 (1059)
|+||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||||+
T Consensus 27 g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GDeeedd~ 106 (1085)
T PLN02400 27 GPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGDEDEDDV 106 (1085)
T ss_pred cCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcccccccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccCCccccccccccccccccccCCCCCCCCccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCC
Q 001529 81 DDLENEFNYAQGNSKARRQWQGEDLELSASSRHESQQPIPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSP 160 (1059)
Q Consensus 81 dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1059)
||+||||||++.+++...+..|++.|...+++|++ +++|+||+||.|++|+++++++|+++.++.++.|.++|||||+|
T Consensus 107 DDlenEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p 185 (1085)
T PLN02400 107 DDLENEFNYAQGNGKARHQWQGEDIELSSSSRHES-QPIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSP 185 (1085)
T ss_pred hhhhhhhccccccccccccccccCccccCcccccC-CCCccccCCcccCCCCCCCCCccccccCCcccccccCCcccccC
Confidence 99999999986544422222467666555556654 47899999999999999988888777776554444689999999
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCC-CCCCCCCCCccccccccccCCCce
Q 001529 161 YTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGK-GDIEGTGSNGEELQMADDARQPLS 239 (1059)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pl~ 239 (1059)
|+|+++|+++|.+||+||+++||||||+||||||+||+||+||+.++.+...+|+ ++.++++++++|+++|++.++||+
T Consensus 186 ~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~ 265 (1085)
T PLN02400 186 YIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMS 265 (1085)
T ss_pred ccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhccccccccccccccCCCCCCCCcccccccccccCCce
Confidence 9999999999999999999999999999999999999999988776655432221 344433445788999999999999
Q ss_pred eEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhh
Q 001529 240 RVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALR 319 (1059)
Q Consensus 240 ~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r 319 (1059)
||+++++++++|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|
T Consensus 266 ~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r 345 (1085)
T PLN02400 266 RVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALR 345 (1085)
T ss_pred EEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhh
Q 001529 320 YDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKK 399 (1059)
Q Consensus 320 ~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk 399 (1059)
|++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|||||||
T Consensus 346 ~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK 425 (1085)
T PLN02400 346 YDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKK 425 (1085)
T ss_pred hccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchh
Q 001529 400 HNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMI 479 (1059)
Q Consensus 400 ~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~ii 479 (1059)
|+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+||
T Consensus 426 ~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iI 505 (1085)
T PLN02400 426 HNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMI 505 (1085)
T ss_pred cCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001529 480 QVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 559 (1059)
Q Consensus 480 qv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1059)
|||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||||||||||||||||||+|||+++|+|||||||
T Consensus 506 qVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 506 QVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred hhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccc
Q 001529 560 PAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKG 639 (1059)
Q Consensus 560 p~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 639 (1059)
|+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+|+||||+|||+||||++||..+......+.|++
T Consensus 586 ~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~ 665 (1085)
T PLN02400 586 PAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKS 665 (1085)
T ss_pred cCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeeeeccCCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865443223334556
Q ss_pred cCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCC
Q 001529 640 CCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 719 (1059)
Q Consensus 640 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~ 719 (1059)
||+.|++.++.+.+..++++..+..+++.++++++++++++++++++++..+++++++++||+|.+|++|++++.||.+.
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~ 745 (1085)
T PLN02400 666 CCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 745 (1085)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCC
Confidence 78877665433322223333334455677899999999999999999888999999999999999999999999999998
Q ss_pred CCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001529 720 TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 799 (1059)
Q Consensus 720 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~R 799 (1059)
..+++++++||+||+||+||++|+||+||||+|||+|||+.||++||++||||+|++|++++|.|+||+|+.++++||+|
T Consensus 746 ~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~R 825 (1085)
T PLN02400 746 STNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 825 (1085)
T ss_pred CCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHH
Q 001529 800 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 879 (1059)
Q Consensus 800 WA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls 879 (1059)
||+|++||+++++||+++|+.++|+++|||+|+++++||++++++++|+++|++||++|++++|.++++++++|+++|++
T Consensus 826 WA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~ 905 (1085)
T PLN02400 826 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFIS 905 (1085)
T ss_pred HhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHH
Confidence 99999999999999999887789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCccceeeeccccchHH
Q 001529 880 IFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIP 959 (1059)
Q Consensus 880 ~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~wt~lliP 959 (1059)
++++++||++|+|+++++||||||||+|.++|+||||++++++|+|+|++++|+||+|..++++.++++|+|+||+|++|
T Consensus 906 ~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP 985 (1085)
T PLN02400 906 IFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIP 985 (1085)
T ss_pred HHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999876667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheee
Q 001529 960 PTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 1039 (1059)
Q Consensus 960 ~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~v~i 1039 (1059)
++|++++||+|+++|+++++++++++|+++++++||++|||+|+|||+||||||++|+|+||++||++||++||||||+|
T Consensus 986 ~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~ 1065 (1085)
T PLN02400 986 PTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRI 1065 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC-CCcccCCCC
Q 001529 1040 DPFTSDDTKAN-SNGQCGINC 1059 (1059)
Q Consensus 1040 ~~~~~~~~~~~-~~~~~~~~~ 1059 (1059)
+||++++ +|| ++++|||+|
T Consensus 1066 ~~~~~~~-~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1066 DPFVSDT-TKAAANGQCGVNC 1085 (1085)
T ss_pred cccccCC-CCchhHhhcCcCC
Confidence 9999999 999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.3e-315 Score=2781.07 Aligned_cols=1046 Identities=69% Similarity=1.235 Sum_probs=968.7
Q ss_pred CCCCCCCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCcc
Q 001529 1 MPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDI 80 (1059)
Q Consensus 1 ~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~ 80 (1059)
|+||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||++
T Consensus 27 ~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d~ee~~~ 106 (1094)
T PLN02436 27 RIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDI 106 (1094)
T ss_pred CCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccCCcc------ccccc---cccccccccc---cCCC---CCCCCccccCCCcccCCCCCCCCCCcccccC
Q 001529 81 DDLENEFNYAQGNSK------ARRQW---QGEDLELSAS---SRHE---SQQPIPLLTNGQSVSGEIPCATPDTQSVRTT 145 (1059)
Q Consensus 81 dd~~~e~~~~~~~~~------~~~~~---~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (1059)
||+||||||++.++. +|+|| +|++.+.+.. +..+ +.+++|++++|| +++|++ +++|++++++
T Consensus 107 dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~ 183 (1094)
T PLN02436 107 DDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHALIVPP 183 (1094)
T ss_pred hhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--CcccccccCC
Confidence 999999999821111 68888 7777554321 0111 125689999998 578887 2456665666
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCC-CCCCCCCCC
Q 001529 146 SGPLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGK-GDIEGTGSN 224 (1059)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 224 (1059)
.+++ +|||||+||+|++++++.|.+||+||+++||||||+||||||+||+||+++++++.+. .+++ +++++.+.+
T Consensus 184 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (1094)
T PLN02436 184 STGH---GNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKHE-GGNDGGNNDGDELD 259 (1094)
T ss_pred cccc---cccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhcccccccc-cccccCCCCCCCCC
Confidence 5433 5999999999999999999999999999999999999999999999999555444442 2221 344432334
Q ss_pred ccccccccccCCCceeEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhcccc
Q 001529 225 GEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKW 304 (1059)
Q Consensus 225 ~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw 304 (1059)
++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||
T Consensus 260 ~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw 339 (1094)
T PLN02436 260 DPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKW 339 (1094)
T ss_pred CcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 67889899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHH
Q 001529 305 YPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALS 384 (1059)
Q Consensus 305 ~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~ 384 (1059)
+||+|+||+|||++|||+++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.
T Consensus 340 ~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~ 419 (1094)
T PLN02436 340 YPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALS 419 (1094)
T ss_pred ccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCC
Q 001529 385 ETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG 464 (1059)
Q Consensus 385 Ea~~FA~~WvPFCkk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg 464 (1059)
|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+||
T Consensus 420 EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dg 499 (1094)
T PLN02436 420 ETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDG 499 (1094)
T ss_pred HHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCC
Q 001529 465 TPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYF 544 (1059)
Q Consensus 465 ~~w~g~~~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~ 544 (1059)
|+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+
T Consensus 500 t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYi 579 (1094)
T PLN02436 500 TPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYI 579 (1094)
T ss_pred ccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEeccccccc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCC
Q 001529 545 NNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDP 624 (1059)
Q Consensus 545 ~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p 624 (1059)
|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+|+||||+|||+||||++|
T Consensus 580 Nns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~aLYG~~p 659 (1094)
T PLN02436 580 NNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 659 (1094)
T ss_pred CchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeeeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCccc-----ccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhh
Q 001529 625 VLTEEDLEPNII-----VKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKR 699 (1059)
Q Consensus 625 ~~~~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1059)
|...+.+...+. ||+||+.|+++++.+++.. + ..++.++..+.+++++++++++++++|++..+++++++++
T Consensus 660 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 736 (1094)
T PLN02436 660 PKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEK--K-KKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKK 736 (1094)
T ss_pred cccccccccccccccccccccccccccccccccccc--c-cccccccccccccccccccccccccchhhhhhhhhhHHhh
Confidence 876553332321 4567887766443222111 1 1233345567889999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCC
Q 001529 700 FGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPR 779 (1059)
Q Consensus 700 fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~ 779 (1059)
||+|.+|++|++++.||.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+||+|.+
T Consensus 737 FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r 816 (1094)
T PLN02436 737 FGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR 816 (1094)
T ss_pred hcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCc
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcc
Q 001529 780 PAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNK 859 (1059)
Q Consensus 780 aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~ 859 (1059)
++|.|+||+|+.+++.||+|||+|++||+++++||+++|+.++|+|+||++|+++++||++++++++|+++|++||++|+
T Consensus 817 ~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~ 896 (1094)
T PLN02436 817 PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTLPAICLLTGK 896 (1094)
T ss_pred hhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998877899999999999999999999999999999999999999
Q ss_pred cchhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCC
Q 001529 860 FIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS 939 (1059)
Q Consensus 860 ~iip~~s~~~~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~ 939 (1059)
+++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|.++|+||||++++++|+|++++++|+||+|..
T Consensus 897 ~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~ 976 (1094)
T PLN02436 897 FIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAA 976 (1094)
T ss_pred eecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcccceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 001529 940 DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPT 1019 (1059)
Q Consensus 940 ~~d~~~~~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~ 1019 (1059)
+ +++++++|+|+||++++|+++++++||+|+++|+++++++++++|+++++++||++|+|+|+|||+||||||++|+||
T Consensus 977 d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~ 1055 (1094)
T PLN02436 977 D-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRMPT 1055 (1094)
T ss_pred c-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCe
Confidence 7 457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001529 1020 IVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1059 (1059)
Q Consensus 1020 ~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1059 (1059)
||++||++||++||||||+||||+++ +||++++|||||
T Consensus 1056 ~v~v~s~lla~~~~l~~v~~~~~~~~--~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1056 IILVWSILLASILTLLWVRVNPFVSK--GGPVLEICGLDC 1093 (1094)
T ss_pred eehHHHHHHHHHHHHHHeeeccccCC--CCccccccCccC
Confidence 99999999999999999999999999 799999999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=9.8e-315 Score=2785.53 Aligned_cols=1049 Identities=76% Similarity=1.314 Sum_probs=965.2
Q ss_pred CCCCCCCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCc-
Q 001529 1 MPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDD- 79 (1059)
Q Consensus 1 ~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~- 79 (1059)
|+||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+
T Consensus 8 ~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~~ 87 (1079)
T PLN02638 8 GAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDGD 87 (1079)
T ss_pred CCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ccchhhhhccccCCcc-------ccccc---cccccccccccCCC---CCCCCccccCCCcccCCCCCCCCCCcccccCC
Q 001529 80 IDDLENEFNYAQGNSK-------ARRQW---QGEDLELSASSRHE---SQQPIPLLTNGQSVSGEIPCATPDTQSVRTTS 146 (1059)
Q Consensus 80 ~dd~~~e~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (1059)
+||+||||+|++.++. +|+|| ||++.|.+. ..++ +++++|+||+||.+++|++.++++++++.++.
T Consensus 88 ~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (1079)
T PLN02638 88 ADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGA-PNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPG 166 (1079)
T ss_pred chhhhhhhccccccccchhHHHHHHhhhhcccCcCccccc-ccccccCCCCCCcccccCccccCccCCCCCccccccCcc
Confidence 8999999999853321 67788 777765431 0111 23578999999988999997777766665554
Q ss_pred CCCCCCCCccccCCCCCCC-CCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccC----CCCCCCCCC-
Q 001529 147 GPLGPSERNVHSSPYTDPR-QPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKY----SEGKGDIEG- 220 (1059)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~----~~~~~~~~~- 220 (1059)
+ + |||| ||+|+. +|.+.|.|||+||+++||||||+||||||+||+||+||+.++.+.. ++|.++.++
T Consensus 167 ~-~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 239 (1079)
T PLN02638 167 A-G---GKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239 (1079)
T ss_pred c-c---CCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence 4 2 4888 898865 7889999999999999999999999999999999998876555432 122233322
Q ss_pred CCCCccccccccccCCCceeEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhh
Q 001529 221 TGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQ 300 (1059)
Q Consensus 221 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 300 (1059)
++.+++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q 319 (1079)
T PLN02638 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ 319 (1079)
T ss_pred cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 22346799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001529 301 FPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTF 380 (1059)
Q Consensus 301 ~~kw~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 380 (1059)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+|||
T Consensus 320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q 001529 381 EALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWT 460 (1059)
Q Consensus 381 ~al~Ea~~FA~~WvPFCkk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~ 460 (1059)
|||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.
T Consensus 400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~ 479 (1079)
T PLN02638 400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479 (1079)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecC
Q 001529 461 MQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDC 540 (1059)
Q Consensus 461 m~dg~~w~g~~~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDc 540 (1059)
|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||||||
T Consensus 480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 559 (1079)
T PLN02638 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 559 (1079)
T ss_pred ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhc
Q 001529 541 DHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALY 620 (1059)
Q Consensus 541 D~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 620 (1059)
|||+|||++||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 560 DmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALY 639 (1079)
T PLN02638 560 DHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 639 (1079)
T ss_pred CcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCcccccccCCC-CCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCC--chhhHhhhhhhHHHH
Q 001529 621 GYDPVLTEEDLEPNIIVKGCCGP-RKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEG--YDDERSLLMSQKSLE 697 (1059)
Q Consensus 621 G~~p~~~~~~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 697 (1059)
|++||...+.......| +||+. +++.++.+.+...+++..++.+.+.+++++++++++.++ ++++++..+++++++
T Consensus 640 G~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1079)
T PLN02638 640 GYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLE 718 (1079)
T ss_pred CcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99998754322112222 35555 333222211111111112334455677888888887775 566777889999999
Q ss_pred hhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCC
Q 001529 698 KRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMP 777 (1059)
Q Consensus 698 ~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~ 777 (1059)
++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+|++|
T Consensus 719 ~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P 798 (1079)
T PLN02638 719 KRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP 798 (1079)
T ss_pred hhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCCCHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHh
Q 001529 778 PRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLT 857 (1059)
Q Consensus 778 ~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~ 857 (1059)
.+++|.|+||+|+.+++.||+|||+|++||+++++||+++|+.++|+++||++|+++++||++++++++|+++|++||++
T Consensus 799 ~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~ 878 (1079)
T PLN02638 799 KRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLT 878 (1079)
T ss_pred CchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999988778999999999999999999999999999999999999
Q ss_pred cccchhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCC
Q 001529 858 NKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK 937 (1059)
Q Consensus 858 G~~iip~~s~~~~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K 937 (1059)
|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+||||++++++|+|++++++|+||+|
T Consensus 879 G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK 958 (1079)
T PLN02638 879 GKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
T ss_pred CCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 001529 938 ASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRT 1017 (1059)
Q Consensus 938 ~~~~d~~~~~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~ 1017 (1059)
..+++++|+++|+|+||+++||++||+++||+|+++|+++++++++++|+++++++||++|||+|+|||+||||||++|+
T Consensus 959 ~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~ 1038 (1079)
T PLN02638 959 ASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
T ss_pred cccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 98877778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001529 1018 PTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1059 (1059)
Q Consensus 1018 P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1059 (1059)
||||++||++|+++||||||+|+||++++ +||.+++||++|
T Consensus 1039 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~-~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1039 PTIVVVWSILLASIFSLLWVRIDPFTTRV-TGPDVEQCGINC 1079 (1079)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCC-CCchhhccCcCC
Confidence 99999999999999999999999999998 999999999999
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=2.9e-300 Score=2654.31 Aligned_cols=1000 Identities=71% Similarity=1.271 Sum_probs=915.4
Q ss_pred CCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCC-CCcCcccchh
Q 001529 6 KNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGD-DEEDDIDDLE 84 (1059)
Q Consensus 6 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd-~ee~~~dd~~ 84 (1059)
+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+|
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 556899999999999999999999999999999999999999999999999999999999999999999 5678899999
Q ss_pred hhhccccCCc-cccccc---cccccccccccCCCCCCCCccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCC
Q 001529 85 NEFNYAQGNS-KARRQW---QGEDLELSASSRHESQQPIPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSP 160 (1059)
Q Consensus 85 ~e~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1059)
|||||+..++ ..|+|+ +|++.|.+.++ .++++|++++ ++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~--------------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDHEPVHQNVFAGSENGDYNAQQ---WRPGGPAFSS----TGSVA--------------------------- 136 (1044)
T ss_pred hhhccccccccchhhhhhccCCCCccccccc---cCCCCccccC----CCCcC---------------------------
Confidence 9999985332 356665 45554433110 0123444443 12221
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCccccccccccCCCcee
Q 001529 161 YTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLSR 240 (1059)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 240 (1059)
.+.+||+|| |||||+||||||+||+||+|+ +.+.+ +. ++.++ ..+++|+++|++.++||+|
T Consensus 137 ---------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~~~-~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~pL~~ 197 (1044)
T PLN02915 137 ---------GKDLEAERE----GYGNAEWKDRVDKWKTRQEKR-GLVNK---DD-SDDGD-DKGDEEEYLLAEARQPLWR 197 (1044)
T ss_pred ---------CCCcCcccc----CcCCHHHHHHHHHHHhhhhhh-ccccc---cc-cCCCC-CCCCcccccccccCCCceE
Confidence 235899998 899999999999999999743 33333 11 11111 2235788999999999999
Q ss_pred EeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhc
Q 001529 241 VVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRY 320 (1059)
Q Consensus 241 ~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~ 320 (1059)
|+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||
T Consensus 198 ~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~ 277 (1044)
T PLN02915 198 KVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRF 277 (1044)
T ss_pred EEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhc
Q 001529 321 DREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKH 400 (1059)
Q Consensus 321 e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~ 400 (1059)
|+++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||||||||
T Consensus 278 e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~ 357 (1044)
T PLN02915 278 ERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKH 357 (1044)
T ss_pred ccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhh
Q 001529 401 NIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQ 480 (1059)
Q Consensus 401 ~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiq 480 (1059)
+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+|||
T Consensus 358 ~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIq 437 (1044)
T PLN02915 358 NIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQ 437 (1044)
T ss_pred CCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001529 481 VFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 481 v~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1059)
||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||
T Consensus 438 Vll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~ 517 (1044)
T PLN02915 438 VYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 517 (1044)
T ss_pred EeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCccc----
Q 001529 561 AYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII---- 636 (1059)
Q Consensus 561 ~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~---- 636 (1059)
+.|+++|||||||+|+|+|++|||+|||+||||++|+|+||+|||+|+||||+|||+||||++||..++.++.++.
T Consensus 518 ~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~ 597 (1044)
T PLN02915 518 QLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPS 597 (1044)
T ss_pred CCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCcccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876555444433
Q ss_pred -ccccCCCCCCCCCCChh-hh---------hhhh------------hhhcccCCCccccchhhhhccCCchh-hHhhhhh
Q 001529 637 -VKGCCGPRKKGKGSNKK-YI---------DKKR------------AMKRTESTVPIFNMEDIEEGVEGYDD-ERSLLMS 692 (1059)
Q Consensus 637 -~~~c~~~~~~~~~~~~~-~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 692 (1059)
|++||+.++++++...+ .. .+++ .+...+++.+.|++++|+++++|+++ |+++.++
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1044)
T PLN02915 598 WCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMS 677 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 44577777664332111 00 0000 01123345678899999999999887 7788899
Q ss_pred hHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEE
Q 001529 693 QKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWIS 772 (1059)
Q Consensus 693 ~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrs 772 (1059)
+++++++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||
T Consensus 678 ~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrS 757 (1044)
T PLN02915 678 QKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKS 757 (1044)
T ss_pred hhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcE
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCCCCHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHH
Q 001529 773 IYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPA 852 (1059)
Q Consensus 773 vY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~ 852 (1059)
+|++|.+++|.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|+++++||++++++++|+++|+
T Consensus 758 vY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~ 837 (1044)
T PLN02915 758 VYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPA 837 (1044)
T ss_pred EeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899999999999999999999999999999999999999877789999999999999999999999999999999
Q ss_pred HHHHhcccchhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCe
Q 001529 853 FCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNF 932 (1059)
Q Consensus 853 l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F 932 (1059)
+||++|++++|.++..++++|+++|+++++++++|++|+|+++++||||||||+|+++|+||||++++++|+|++++++|
T Consensus 838 l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F 917 (1044)
T PLN02915 838 VCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNF 917 (1044)
T ss_pred HHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 99999999999888878888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCC-CcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 001529 933 TVTSKASDD-DGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1011 (1059)
Q Consensus 933 ~VT~K~~~~-d~~~~~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~ 1011 (1059)
+||+|+.++ +++++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||
T Consensus 918 ~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLm 997 (1044)
T PLN02915 918 TVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 997 (1044)
T ss_pred eecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999764 3357899999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001529 1012 GRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1059 (1059)
Q Consensus 1012 gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1059 (1059)
||++|+||||++||++||++|+||||+|+||++++ +||++++|||+|
T Consensus 998 gR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~-~~~~~~~~~~~~ 1044 (1044)
T PLN02915 998 GRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQ-TGPILKQCGVEC 1044 (1044)
T ss_pred CCCCCCCeeehHHHHHHHHHHHHHHheeccccCCC-CCccccccCCCC
Confidence 99999999999999999999999999999999998 999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=2.3e-298 Score=2637.25 Aligned_cols=1002 Identities=71% Similarity=1.256 Sum_probs=926.0
Q ss_pred CCCCCCCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCcc
Q 001529 1 MPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDI 80 (1059)
Q Consensus 1 ~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~ 80 (1059)
|+||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||++
T Consensus 25 ~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd~ee~~~ 104 (1040)
T PLN02189 25 EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGDDDEEDI 104 (1040)
T ss_pred CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccccCCcc------ccccc---cccccccccccCCCCCCCCccccCCCc--ccCCCCCCCC--CCcccccCCC
Q 001529 81 DDLENEFNYAQGNSK------ARRQW---QGEDLELSASSRHESQQPIPLLTNGQS--VSGEIPCATP--DTQSVRTTSG 147 (1059)
Q Consensus 81 dd~~~e~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~ 147 (1059)
||+||||+|++.++. +|+|+ +|++.+.+. +.+++|++++||+ +++|++..|+ +|+++.++.+
T Consensus 105 dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1040)
T PLN02189 105 DDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE-----NNQFPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSSL 179 (1040)
T ss_pred hhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC-----CcCCCcccccCccccccCCcCccccccccccccCCcc
Confidence 999999999842211 67887 677755442 1246789999873 7888874332 3444444443
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCccc
Q 001529 148 PLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEE 227 (1059)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (1059)
+|+|||+||+|.+ .|.|||+||++ ||||||+||+||++ . ++ ++ +++++|
T Consensus 180 -----~~~~~~~~~~~~~----~~~~~~~~~~~--------wk~rv~~wk~~~~~------~---~~----~~-~~~~~d 228 (1040)
T PLN02189 180 -----HKRVHPYPVSEPG----SAKWDEKKEGG--------WKERMDDWKMQQGN------L---GP----DP-DDYDAD 228 (1040)
T ss_pred -----cCccCcccccCCC----cccCCcccccc--------HHHHHHHHHhhccc------C---CC----CC-CCCchh
Confidence 4999999999854 68999999975 99999999999951 1 11 11 233567
Q ss_pred cccccccCCCceeEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccc
Q 001529 228 LQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPV 307 (1059)
Q Consensus 228 ~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv 307 (1059)
+++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||
T Consensus 229 ~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv 308 (1040)
T PLN02189 229 MALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPI 308 (1040)
T ss_pred hhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHH
Q 001529 308 NRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETA 387 (1059)
Q Consensus 308 ~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~ 387 (1059)
+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||
T Consensus 309 ~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 388 (1040)
T PLN02189 309 DRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETA 388 (1040)
T ss_pred cceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCC
Q 001529 388 EFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPW 467 (1059)
Q Consensus 388 ~FA~~WvPFCkk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w 467 (1059)
+|||+||||||||||||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++|
T Consensus 389 ~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W 468 (1040)
T PLN02189 389 EFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPW 468 (1040)
T ss_pred HHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcH
Q 001529 468 PGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNS 547 (1059)
Q Consensus 468 ~g~~~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p 547 (1059)
||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||
T Consensus 469 ~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns 548 (1040)
T PLN02189 469 PGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNS 548 (1040)
T ss_pred CCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCc
Q 001529 548 KALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLT 627 (1059)
Q Consensus 548 ~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~ 627 (1059)
++||+||||||||+.|+++|||||||+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++|++.
T Consensus 549 ~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~ 628 (1040)
T PLN02189 549 KAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKG 628 (1040)
T ss_pred HHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred ccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHH
Q 001529 628 EEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFI 707 (1059)
Q Consensus 628 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 707 (1059)
...+..++.|++||..+++.++.+... .....++++++++++..+++++++++||+|.+|+
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi 689 (1040)
T PLN02189 629 PKRPKMVTCDCCPCFGRRKKKHAKNGL-------------------NGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFV 689 (1040)
T ss_pred cccccccccchhhhccccccccccccc-------------------ccccccccccchhhhhhhhhhhhHhhhccchhhh
Confidence 554444444444555444322211110 0001233445556667788999999999999999
Q ss_pred HHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCC
Q 001529 708 AATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAP 787 (1059)
Q Consensus 708 ~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP 787 (1059)
+|++.+.+|.+..++++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+|++|++++|.|+||
T Consensus 690 ~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP 769 (1040)
T PLN02189 690 TSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAP 769 (1040)
T ss_pred hhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCC
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccchHHHhhhccccccccC-CCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhch
Q 001529 788 INLSDRLNQVLRWALGSIEILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEIS 866 (1059)
Q Consensus 788 ~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~-~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s 866 (1059)
+|+.+++.||+|||+|++||+++++||+++|+. ++|+++||++|+++++||++++|+++|+++|++||++|++++|.++
T Consensus 770 ~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g~~i~p~vs 849 (1040)
T PLN02189 770 INLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLTGKFIMPPIS 849 (1040)
T ss_pred CCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccc
Confidence 999999999999999999999999999998763 6799999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCcc
Q 001529 867 NFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA 946 (1059)
Q Consensus 867 ~~~~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~ 946 (1059)
++++.+|+++|++++++.++|++|+|+++++||||||||+|.++|+||||++++++|+|++++++|.||+|..+ +++++
T Consensus 850 ~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTsK~~~-d~~~~ 928 (1040)
T PLN02189 850 TFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATD-DDEFG 928 (1040)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceecccccc-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 56788
Q ss_pred ceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 001529 947 ELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSI 1026 (1059)
Q Consensus 947 ~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~ 1026 (1059)
++|+|+||+++||++||+++||+|+++|+++++++++++|+++++++||++|+++|+|||+||||||++|+||||++||+
T Consensus 929 ~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ 1008 (1040)
T PLN02189 929 ELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSV 1008 (1040)
T ss_pred cceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001529 1027 LLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1059 (1059)
Q Consensus 1027 ~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1059 (1059)
+|+++|+||||+|+||++++ +||.+++||++|
T Consensus 1009 ll~~~~~l~~v~~~~~~~~~-~~~~~~~~~~~~ 1040 (1040)
T PLN02189 1009 LLASIFSLLWVRIDPFVLKT-KGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHHHHheecccccCC-CCchhhccCcCC
Confidence 99999999999999999998 999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=5e-286 Score=2520.02 Aligned_cols=971 Identities=68% Similarity=1.207 Sum_probs=875.1
Q ss_pred CcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCcccchhhh
Q 001529 7 NLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDIDDLENE 86 (1059)
Q Consensus 7 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e 86 (1059)
++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| |||++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 578999999999999999999999999999999999999999999999999999998 57778999999
Q ss_pred hccccCCccccccccccccccccccCCCCCCCCccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCCCCCCCC
Q 001529 87 FNYAQGNSKARRQWQGEDLELSASSRHESQQPIPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSPYTDPRQ 166 (1059)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1059)
|+- +++.+. + .+++|+. .+. | ..+++.+++.+...
T Consensus 71 ~~~---~~~~~~-~--------------------~~~~~~~----~~~----~-------------~~~~~~~~~~~~~~ 105 (977)
T PLN02195 71 HSR---NQSTMA-S--------------------HLNDTQD----VGI----H-------------ARHISSVSTVDSEL 105 (977)
T ss_pred hcc---chhhhh-h--------------------hcccCcC----CCC----C-------------CccccccccCCCcc
Confidence 842 111111 0 1222220 000 0 01111111111111
Q ss_pred CCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCccccccccccCCCceeEeecCC
Q 001529 167 PVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLSRVVPIPS 246 (1059)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 246 (1059)
| | +|||++||||||+||.||+||+.++.+... .+++.++ +++++|+++ ||.++||+||+++++
T Consensus 106 ~----------~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~pL~~~~~i~~ 168 (977)
T PLN02195 106 N----------D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKAQIPP-EQQMEEKPS-ADAYEPLSRVIPIPR 168 (977)
T ss_pred c----------C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cccCCCC-ccCCccccc-ccccCCceEEEecCc
Confidence 0 1 399999999999999999988776654321 1123322 334678886 999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhcCCCCCC
Q 001529 247 SHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEP 326 (1059)
Q Consensus 247 ~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~ 326 (1059)
++++|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++|+++
T Consensus 169 ~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~ 248 (977)
T PLN02195 169 NKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEP 248 (977)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001529 327 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 406 (1059)
Q Consensus 327 ~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~ 406 (1059)
++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||||||||||||||
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 328 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRA 328 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001529 407 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 486 (1059)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~ 486 (1059)
||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+|||||++++
T Consensus 329 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~ 408 (977)
T PLN02195 329 PEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGET 408 (977)
T ss_pred HHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcE
Q 001529 487 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKT 566 (1059)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v 566 (1059)
|+.|.+|++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||++||+|||||+||+.|+++
T Consensus 409 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~v 488 (977)
T PLN02195 409 GARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDV 488 (977)
T ss_pred CCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccc-cccCCCCC
Q 001529 567 CYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIV-KGCCGPRK 645 (1059)
Q Consensus 567 a~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~-~~c~~~~~ 645 (1059)
|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.++.++.| ++||+.++
T Consensus 489 a~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~ 568 (977)
T PLN02195 489 CYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSCCCPTKK 568 (977)
T ss_pred EEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998765554444444 23455443
Q ss_pred CCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001529 646 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 725 (1059)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~ 725 (1059)
+....+++ ..+..++.+.+.+++.++++++ ..+++++..+++++++++||+|.+|++|++.+.+|.+...++++
T Consensus 569 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ 642 (977)
T PLN02195 569 KPEQDPSE---IYRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPST 642 (977)
T ss_pred cccccchh---hccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHH
Confidence 32211111 0111122223334444544432 12336677889999999999999999999999999988888999
Q ss_pred hHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccch
Q 001529 726 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSI 805 (1059)
Q Consensus 726 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~l 805 (1059)
+++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+||+|.+++|.|+||+|+.+++.||+|||+|++
T Consensus 643 ~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~l 722 (977)
T PLN02195 643 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSV 722 (977)
T ss_pred HHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHhhhccccccccC-CCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHHHHHHH
Q 001529 806 EILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATG 884 (1059)
Q Consensus 806 QIl~sk~~Pl~~g~~-~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~ 884 (1059)
||+++++||+++|+. ++|+|+||++|+++++||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++
T Consensus 723 qI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~ 802 (977)
T PLN02195 723 EIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTS 802 (977)
T ss_pred hhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 7899999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCccceeeeccccchHHHHHHH
Q 001529 885 ILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVL 964 (1059)
Q Consensus 885 lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~wt~lliP~~~Ll 964 (1059)
++|++|+|+++++||||||||+|+++|+||||++++++|+|+|++++|+||+|..+ +++|+++|+|+||+++||++||+
T Consensus 803 ~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~f~~S~l~iP~ttl~ 881 (977)
T PLN02195 803 VLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYMVKWTTLLIPPTSLL 881 (977)
T ss_pred HHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhcceeccceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 66789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCC
Q 001529 965 IVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS 1044 (1059)
Q Consensus 965 ilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~ 1044 (1059)
++||+|+++|+++++++++++|+++++++||++|+++|+|||+||||||++|+|+||++||++|+++||||||+||||++
T Consensus 882 ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~ 961 (977)
T PLN02195 882 IINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVG 961 (977)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-Cccc-CCCC
Q 001529 1045 DDTKANS-NGQC-GINC 1059 (1059)
Q Consensus 1045 ~~~~~~~-~~~~-~~~~ 1059 (1059)
++ +||+ +++| |++|
T Consensus 962 ~~-~~~~~~~~~~~~~~ 977 (977)
T PLN02195 962 KT-DTTTLSNNCISIDC 977 (977)
T ss_pred CC-CCCchhhccCCCCC
Confidence 99 9999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=6.7e-248 Score=2202.15 Aligned_cols=926 Identities=52% Similarity=0.950 Sum_probs=802.5
Q ss_pred CCCcCCccccc--cCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCcccc
Q 001529 5 LKNLNGQTCQI--CGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDIDD 82 (1059)
Q Consensus 5 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd 82 (1059)
....++..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++| +.||+||++||.+ |+++++ +|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~-~~ 187 (1135)
T PLN02248 119 MAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------DLDDEV-PD 187 (1135)
T ss_pred cCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------cccccc-cc
Confidence 34457789998 99999999999999999 999999999999999996 7999999999865 332222 22
Q ss_pred hhhhhccccCCccccccccccccccccccCCCCCCC-CccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCCC
Q 001529 83 LENEFNYAQGNSKARRQWQGEDLELSASSRHESQQP-IPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSPY 161 (1059)
Q Consensus 83 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1059)
.++ ...++.. .+.+ .+++ +. +..+ ...+..+| +|||+|
T Consensus 188 ~~~-------~~~~~~~-~~~~-~~~~--~~-~~~~~~~~~~~~~--~~~~~~--------------------------- 226 (1135)
T PLN02248 188 ESS-------GALPLPP-PGGS-KMDR--RL-SLMKSNSLLMRSQ--TGDFDH--------------------------- 226 (1135)
T ss_pred ccc-------ccccCCC-CCCc-cccc--cc-ccccccchhccCC--CCCCCC---------------------------
Confidence 111 1222110 0100 0000 00 0000 01244456 677775
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCccccccccccCCCceeE
Q 001529 162 TDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLSRV 241 (1059)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 241 (1059)
+||++++| ++|||||+.|++... . | ++.+ +.. ...+|+++|+||+||
T Consensus 227 --------~~w~~~~~--~~~~~~~~~~~~~~~-------------~-----~-~~~~--~~~--~~~~~~~~~~pL~~~ 273 (1135)
T PLN02248 227 --------NRWLFETK--GTYGYGNAVWPKDDG-------------Y-----G-DDGG--GGG--PGEFMDKPWRPLTRK 273 (1135)
T ss_pred --------ceeeeecc--cccccccccCccccc-------------c-----C-CCCC--ccc--cccccccCCCCceee
Confidence 79999999 999999999998632 1 1 0001 111 114689999999999
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhcC
Q 001529 242 VPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYD 321 (1059)
Q Consensus 242 ~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e 321 (1059)
+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|||
T Consensus 274 ~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e 353 (1135)
T PLN02248 274 VKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFE 353 (1135)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred CCC-----CCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhh
Q 001529 322 REG-----EPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPF 396 (1059)
Q Consensus 322 ~~~-----~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPF 396 (1059)
.|+ ++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+||||
T Consensus 354 ~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPF 433 (1135)
T PLN02248 354 TPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPF 433 (1135)
T ss_pred cccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcch
Confidence 654 367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q 001529 397 CKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAK-------------------------- 450 (1059)
Q Consensus 397 Ckk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~-------------------------- 450 (1059)
||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++.
T Consensus 434 CrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~ 513 (1135)
T PLN02248 434 CRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGG 513 (1135)
T ss_pred hhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999641
Q ss_pred ----hccCCccccccCCCCCCCCCC--------CCCCcchhhhhhcCCC------------CCCC--CCCCCCcEEEEec
Q 001529 451 ----AQKMPEEGWTMQDGTPWPGNN--------PRDHPGMIQVFLGRSG------------GLDT--DGNELPRLVYVSR 504 (1059)
Q Consensus 451 ----~~~~p~~~w~m~dg~~w~g~~--------~~dHp~iiqv~l~~~g------------~~d~--~~~~lP~lvYvsR 504 (1059)
.+++|+++| |+|||+|||++ ++|||+|||||+++++ ..|. .+++||+||||||
T Consensus 514 ~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSR 592 (1135)
T PLN02248 514 DPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSR 592 (1135)
T ss_pred cccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccccccceeEEEec
Confidence 245789999 99999999984 5699999999998653 1122 2449999999999
Q ss_pred cCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccc
Q 001529 505 EKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRY 584 (1059)
Q Consensus 505 ekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~ 584 (1059)
||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||+|+|+|++|||
T Consensus 593 EKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Y 671 (1135)
T PLN02248 593 EKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRY 671 (1135)
T ss_pred ccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred cchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcc
Q 001529 585 ANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRT 664 (1059)
Q Consensus 585 ~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1059)
+||+++|||++|+|+||+|||+||||||+|||+||||++||+.++..+. |++||+.++++++.+..
T Consensus 672 gn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~---~~~~~~~~~~~~~~~~~----------- 737 (1135)
T PLN02248 672 ANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC---FGSCKFTKKKKKETSAS----------- 737 (1135)
T ss_pred CCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc---ccccccccccccccccc-----------
Confidence 9999999999999999999999999999999999999999875443222 33455544332211100
Q ss_pred cCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHh-hhCCCCC-------------------CCCch
Q 001529 665 ESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFM-EQGGIPP-------------------TTNPA 724 (1059)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~-e~GG~~~-------------------~~~~~ 724 (1059)
.. -.+++++ .++ .++.+.++++||+|..|++|+.. +.+|.+. ...++
T Consensus 738 ---~~-~~~~~~~-----~~~----~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1135)
T PLN02248 738 ---EP-EEQPDLE-----DDD----DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDA 804 (1135)
T ss_pred ---cc-ccccccc-----ccc----hhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcH
Confidence 00 0022221 111 13567789999999999999853 3232221 12356
Q ss_pred hhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001529 725 SLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 804 (1059)
Q Consensus 725 ~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~ 804 (1059)
++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||++++++|.|+||+|+.++++||+|||+|+
T Consensus 805 ~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~ 884 (1135)
T PLN02248 805 ATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 884 (1135)
T ss_pred HHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhch
Confidence 89999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred hHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHHHHHHH
Q 001529 805 IEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATG 884 (1059)
Q Consensus 805 lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~ 884 (1059)
+||++++++|+++ .++|+++||++|+++++||++++++++|+++|++||++|++++|+.+..++++++.+++++++++
T Consensus 885 lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~s 962 (1135)
T PLN02248 885 VEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLA 962 (1135)
T ss_pred HHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 46899999999999999999999999999999999999999999876666666666778889999
Q ss_pred HHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCC--cCccceeeeccccchHHHHH
Q 001529 885 ILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDD--GDFAELYVFKWTSLLIPPTT 962 (1059)
Q Consensus 885 lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d--~~~~~ly~f~wt~lliP~~~ 962 (1059)
++|++|+|+++++||||||||+|.++++||+|++++++|+|+|++++|+||+|..+++ ..|+++|+|+||++++|+++
T Consensus 963 llE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~tt 1042 (1135)
T PLN02248 963 VLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPIT 1042 (1135)
T ss_pred HHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987643 35789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCC
Q 001529 963 VLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPF 1042 (1059)
Q Consensus 963 Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~ 1042 (1059)
++++||+|+++|++|++.++++.|+.+++++|+++|+++|+|||+||||||++|+||||++||++|++++|||||+|+||
T Consensus 1043 l~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~ 1122 (1135)
T PLN02248 1043 IMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPP 1122 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccc
Confidence 99999999999999999887888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 001529 1043 TSDD 1046 (1059)
Q Consensus 1043 ~~~~ 1046 (1059)
+...
T Consensus 1123 ~~~~ 1126 (1135)
T PLN02248 1123 SGAA 1126 (1135)
T ss_pred cCcc
Confidence 9655
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.2e-221 Score=1929.13 Aligned_cols=719 Identities=71% Similarity=1.245 Sum_probs=692.5
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhh
Q 001529 332 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 411 (1059)
Q Consensus 332 VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~YF 411 (1059)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.||++|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCC
Q 001529 412 AQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDT 491 (1059)
Q Consensus 412 s~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~d~ 491 (1059)
+++.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+|||||++++|+.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEec
Q 001529 492 DGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQF 571 (1059)
Q Consensus 492 ~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~ 571 (1059)
+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001529 572 PQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 651 (1059)
Q Consensus 572 PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 651 (1059)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+..+.++.|++||++++|+++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777776667776666655433
Q ss_pred hhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhh
Q 001529 652 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 731 (1059)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~ 731 (1059)
++. +++..++.+++.+.++++++++++++.+++++..+++++++++||+|++|++|+..+.|+.+...+++++|+||+
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~ 398 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAI 398 (720)
T ss_pred ccc--hhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 222 123445667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchHHHhhh
Q 001529 732 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSR 811 (1059)
Q Consensus 732 ~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~sk 811 (1059)
||+||+||++|+||+||||+|||+|||+.||++||++||||+||+|++++|.|.||+|+.+.+.|++|||.|++||+++|
T Consensus 399 ~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr 478 (720)
T PF03552_consen 399 HVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSR 478 (720)
T ss_pred HHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 001529 812 HCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWS 891 (1059)
Q Consensus 812 ~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~~w~ 891 (1059)
+||+|+|+.++|+++|||+|++.++|+++|+|.++|+++|++||++|++++|++++.++++|+++|+++++++++|++|+
T Consensus 479 ~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ws 558 (720)
T PF03552_consen 479 HCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWS 558 (720)
T ss_pred CCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCC-CCcCccceeeeccccchHHHHHHHHHHHHH
Q 001529 892 GVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASD-DDGDFAELYVFKWTSLLIPPTTVLIVNLVG 970 (1059)
Q Consensus 892 G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~-~d~~~~~ly~f~wt~lliP~~~Llilnlvg 970 (1059)
|+++++||||||||+|.++++||||++++++|+|++++++|+||+|..+ ++++++++|+|+||++++|++||+++||+|
T Consensus 559 G~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNLva 638 (720)
T PF03552_consen 559 GVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNLVA 638 (720)
T ss_pred cCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 355688999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCC
Q 001529 971 IVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKAN 1050 (1059)
Q Consensus 971 iv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~ 1050 (1059)
+++|+++++++++++|+++++++||++||++|+|||+||||||++|+||||++||++||++|+||||+||||++++ +||
T Consensus 639 ~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~-~~~ 717 (720)
T PF03552_consen 639 FVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKT-TGP 717 (720)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCc
Q 001529 1051 SNG 1053 (1059)
Q Consensus 1051 ~~~ 1053 (1059)
+++
T Consensus 718 ~~~ 720 (720)
T PF03552_consen 718 DLK 720 (720)
T ss_pred CCC
Confidence 875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=8.9e-203 Score=1772.42 Aligned_cols=726 Identities=36% Similarity=0.636 Sum_probs=658.0
Q ss_pred cCCCceeEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCchhhHHHHHHHHHHHHHHHHHhhccccccccccchH
Q 001529 234 ARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYL 313 (1059)
Q Consensus 234 ~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 313 (1059)
+.+||++++++++++ ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhh
Q 001529 314 DRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKW 393 (1059)
Q Consensus 314 drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~W 393 (1059)
|||++|++ +||+||||||||||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCC--CCCCCCC
Q 001529 394 VPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG--TPWPGNN 471 (1059)
Q Consensus 394 vPFCkk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg--~~w~g~~ 471 (1059)
|||||||||||||||+||+++.+ ++..++|++|||+|||||||||+||++.+ +...|.++|+ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33568999999999999999999999864 3466777655 6899999
Q ss_pred CCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHH
Q 001529 472 PRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALK 551 (1059)
Q Consensus 472 ~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr 551 (1059)
++|||+|||||++++|+ +.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccC
Q 001529 552 EAMCFMMDPAY-GKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEED 630 (1059)
Q Consensus 552 ~amcff~Dp~~-g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 630 (1059)
+||||||||+. ++++|||||||+|+ |+|+||+++||+++|+|+||+|||+|+||||+|||+||||++||+..+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 99999999974 45899999999998 7899999999999999999999999999999999999999988753221
Q ss_pred CCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHH
Q 001529 631 LEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAAT 710 (1059)
Q Consensus 631 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sa 710 (1059)
... . +.. ++ ...++.+++++||+|..|++|+
T Consensus 382 ~~~----------------~----------------~~~----------------~~-~~~~~~~~~~~fg~s~~f~~s~ 412 (756)
T PLN02190 382 GSL----------------S----------------SVA----------------TR-EFLAEDSLAREFGNSKEMVKSV 412 (756)
T ss_pred ccc----------------c----------------ccc----------------cc-cccchhhhhhhcCCcHHHHHHH
Confidence 000 0 000 00 0234566789999999999999
Q ss_pred HhhhCCCCC-CCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCC
Q 001529 711 FMEQGGIPP-TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPIN 789 (1059)
Q Consensus 711 l~e~GG~~~-~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~t 789 (1059)
+.+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||++++++|.|++|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~ 492 (756)
T PLN02190 413 VDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPG 492 (756)
T ss_pred HHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCC
Confidence 876644332 2345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHH
Q 001529 790 LSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFA 869 (1059)
Q Consensus 790 l~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~ 869 (1059)
+.++++||+|||+|++||+++++||++++..++|++.||++|++.++ |++++|+++|+++|++||++|++++|.. .+
T Consensus 493 l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~ 569 (756)
T PLN02190 493 GPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VY 569 (756)
T ss_pred hHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cH
Confidence 99999999999999999999999999976668999999999999988 9999999999999999999999999975 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCC---------
Q 001529 870 SMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASD--------- 940 (1059)
Q Consensus 870 ~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~--------- 940 (1059)
+.+++++++++++++++|++|+|+++++||||||||+|.++|+||||++++++|+|++++++|+||+|..+
T Consensus 570 ~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~ 649 (756)
T PLN02190 570 LGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSG 649 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccc
Confidence 67778888899999999999999999999999999999999999999999999999999999999999643
Q ss_pred -----CCcCc--cceeeeccccchHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 001529 941 -----DDGDF--AELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAIN---SGYQSWGPLFGKLFFAIWVIAHLYPFLKGL 1010 (1059)
Q Consensus 941 -----~d~~~--~~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~---~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL 1010 (1059)
+++.+ +++|+|+||++++|++|++++||+|+++|+++.+. +..+.|+. ++++|+++|+++|++||+|||
T Consensus 650 ~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl 728 (756)
T PLN02190 650 PSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGL 728 (756)
T ss_pred cccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 11223 68899999999999999999999999988887654 33345654 599999999999999999999
Q ss_pred hcCC-CCCchhHHHHHHHHHHHHHhhhe
Q 001529 1011 LGRQ-NRTPTIVIVWSILLASIFSLLWV 1037 (1059)
Q Consensus 1011 ~gR~-~r~P~~v~~~s~~la~~f~~l~v 1037 (1059)
|+|. +|+|++|+++|++|+.+|+++.|
T Consensus 729 ~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 729 FEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred hcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 9765 59999999999999999999875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=6.3e-194 Score=1705.76 Aligned_cols=707 Identities=36% Similarity=0.674 Sum_probs=651.7
Q ss_pred ccCCCceeEeecCCCCCchhHHHHHHHHHHHHHhhheeeeccCCCc-hhhHHHHHHHHHHHHHHHHHhhccccccccccc
Q 001529 233 DARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDA-YPLWLTSVICEIWFALSWLLDQFPKWYPVNRET 311 (1059)
Q Consensus 233 ~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~ 311 (1059)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3556999999998875 5999999999999999999999977655 789999999999999999999999999999999
Q ss_pred hHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhh
Q 001529 312 YLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAR 391 (1059)
Q Consensus 312 ~~drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~ 391 (1059)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCC-----CC
Q 001529 392 KWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG-----TP 466 (1059)
Q Consensus 392 ~WvPFCkk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg-----~~ 466 (1059)
+||||||||||||||||+||+++ +++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~--------~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSN--------SHSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccC--------CCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 99999999999999999999998 3567899999999999999999999976 888877 655444 78
Q ss_pred CCCCC-CCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCC
Q 001529 467 WPGNN-PRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFN 545 (1059)
Q Consensus 467 w~g~~-~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~ 545 (1059)
|++|. ++|||+||||+++++++.|.+|++||+||||||||||||+||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCC
Q 001529 546 NSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPV 625 (1059)
Q Consensus 546 ~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~ 625 (1059)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHH
Q 001529 626 LTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPV 705 (1059)
Q Consensus 626 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 705 (1059)
.. .++++ .+++
T Consensus 393 ~~---------------------------------------------~~~~~---------------------~~~~--- 403 (734)
T PLN02893 393 LI---------------------------------------------LPEIP---------------------ELNP--- 403 (734)
T ss_pred cc---------------------------------------------chhhh---------------------hccc---
Confidence 00 00000 0010
Q ss_pred HHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCccccc
Q 001529 706 FIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGS 785 (1059)
Q Consensus 706 f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~Gl 785 (1059)
.++...+....++++||++|+||.||++|+||+||||.|+|+|||+.||++||++||||+|+++++++|.|+
T Consensus 404 --------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~ 475 (734)
T PLN02893 404 --------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGD 475 (734)
T ss_pred --------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccC
Confidence 111223345677999999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhc
Q 001529 786 APINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEI 865 (1059)
Q Consensus 786 aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~ 865 (1059)
+|+|+.++++||+|||+|++||+++++||+++|. ++|++.||++|++.++||++++|+++|+++|++||++|++++|++
T Consensus 476 aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~ 554 (734)
T PLN02893 476 SPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKA 554 (734)
T ss_pred CCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccc
Confidence 9999999999999999999999999999999764 689999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCc--
Q 001529 866 SNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDG-- 943 (1059)
Q Consensus 866 s~~~~~~fi~lfls~~~~~lLe~~w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~-- 943 (1059)
+..++++++++++++++++++|++|+|+++++||||||+|+|.++++|+++++++++|.|++++++|+||+|+.+++.
T Consensus 555 s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~ 634 (734)
T PLN02893 555 SDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSK 634 (734)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccccc
Confidence 888988899999999999999999999999999999999999999999999999999999999999999999976422
Q ss_pred Cc-cceeeecc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC--CCch
Q 001529 944 DF-AELYVFKW-TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQN--RTPT 1019 (1059)
Q Consensus 944 ~~-~~ly~f~w-t~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~~--r~P~ 1019 (1059)
.+ .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+++++++|+++|+++|++||++|||+|++ |+|+
T Consensus 635 ~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~ 712 (734)
T PLN02893 635 RYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPV 712 (734)
T ss_pred ccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence 23 48999995 8899999999999999999999999875 35888999999999999999999999999986 9999
Q ss_pred hHHHHHHHHHHHHHhh
Q 001529 1020 IVIVWSILLASIFSLL 1035 (1059)
Q Consensus 1020 ~v~~~s~~la~~f~~l 1035 (1059)
+|++||++||.+++++
T Consensus 713 ~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 713 KITLISIVLAWALYLA 728 (734)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2.7e-67 Score=639.85 Aligned_cols=491 Identities=26% Similarity=0.387 Sum_probs=386.0
Q ss_pred HH-HHHHHHHHHHHhhheeeeccCCCc----hhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhcCCCCCCC
Q 001529 253 RV-VIILRLIILGFFLQYRVTHPVKDA----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPS 327 (1059)
Q Consensus 253 R~-~i~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~ 327 (1059)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|... ..|.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 55 466666778999999999987643 2356778999999999999988888888877542 1233457
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001529 328 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 407 (1059)
Q Consensus 328 ~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~P 407 (1059)
.+|+|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 7999999999999 9999999999999999999999999999999887432211110
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001529 408 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 487 (1059)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g 487 (1059)
+.+. ++..++ +.+++++ .
T Consensus 185 -------------------~~~~---~~~~~~----~~~l~~~-----------------------------------~- 202 (713)
T TIGR03030 185 -------------------QAEA---AQRREE----LKEFCRK-----------------------------------L- 202 (713)
T ss_pred -------------------hhhh---hhhHHH----HHHHHHH-----------------------------------c-
Confidence 0110 000112 2223321 0
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCcE
Q 001529 488 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKT 566 (1059)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v 566 (1059)
++.|+.|++ |+|+||||||++++. ++||||+++||||+ +.|++|++++++| .|| ++
T Consensus 203 ----------~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 203 ----------GVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ----------CcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 388999998 788999999999996 89999999999998 6899999999988 588 89
Q ss_pred EEEecCccccCCCcc-------ccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccc
Q 001529 567 CYVQFPQRFDGIDLH-------DRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKG 639 (1059)
Q Consensus 567 a~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 639 (1059)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998864 34567888999999999999999999999999999887
Q ss_pred cCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCC
Q 001529 640 CCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 719 (1059)
Q Consensus 640 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~ 719 (1059)
+++||+++
T Consensus 320 ------------------------------------------------------------------------~~iGGf~~ 327 (713)
T TIGR03030 320 ------------------------------------------------------------------------DEIGGIAG 327 (713)
T ss_pred ------------------------------------------------------------------------HHcCCCCC
Confidence 46787654
Q ss_pred CCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001529 720 TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 799 (1059)
Q Consensus 720 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~R 799 (1059)
++++||++++++||++||+++|++++.. +|++|+|++++++||.|
T Consensus 328 ---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr~R 372 (713)
T TIGR03030 328 ---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQRIR 372 (713)
T ss_pred ---------------------------------CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHHHH
Confidence 5899999999999999999999987665 89999999999999999
Q ss_pred hhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHH
Q 001529 800 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 879 (1059)
Q Consensus 800 WA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls 879 (1059)
|++|++|+++. .+|++ .+++++.||++|+++++||++++++++|+++|++++++|+.+++..... +++.+++
T Consensus 373 Wa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~----~~~~~lp 444 (713)
T TIGR03030 373 WAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALE----ILAYALP 444 (713)
T ss_pred HhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHH----HHHHHHH
Confidence 99999999985 48988 6899999999999999999999999999999999999999998763221 2223345
Q ss_pred HHHHHHHHHh-hcCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCccceeeeccccchH
Q 001529 880 IFATGILEIR-WSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLI 958 (1059)
Q Consensus 880 ~~~~~lLe~~-w~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~wt~lli 958 (1059)
+++.+++.+. ..|.....||+ +. +.+...++.+...+.+.+++++.+|+||+|++..+..+ + +.+++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-----~--~~~~~ 512 (713)
T TIGR03030 445 HMLHSLLTNSYLFGRVRWPFWS-EV----YETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-----F--SPLSR 512 (713)
T ss_pred HHHHHHHHHHHHcCCeecchHH-HH----HHHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-----c--chHHH
Confidence 5555555533 34544556775 33 33333345555666667889999999999997644332 1 25899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 001529 959 PPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1011 (1059)
Q Consensus 959 P~~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~ 1011 (1059)
|+++++++|++|+++|+++.+.... ...+.++..+|.++|++-...++.
T Consensus 513 p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 513 PYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864332 223446888888888876666554
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=3.4e-67 Score=640.17 Aligned_cols=474 Identities=26% Similarity=0.416 Sum_probs=374.4
Q ss_pred HHHHHHHHHHHHhhheeeeccCCCc----hhhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhcCCCCCCCCC
Q 001529 254 VVIILRLIILGFFLQYRVTHPVKDA----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQL 329 (1059)
Q Consensus 254 ~~i~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~l 329 (1059)
+++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|+.. +.|...+.+
T Consensus 188 ~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~ 259 (852)
T PRK11498 188 MLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLW 259 (852)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCC
Confidence 3567778889999999999987643 3456778999999999999988888888877532 223345678
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|||+||||| ||..++.+|+.+++++|||.+|+.|||+|||+++ |+.
T Consensus 260 P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~---------------------- 307 (852)
T PRK11498 260 PTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFR---------------------- 307 (852)
T ss_pred CcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHH----------------------
Confidence 99999999999 9999999999999999999999999999999886 111
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
+ ++++ .
T Consensus 308 -----------------------------~-------la~~-----------------------------------~--- 313 (852)
T PRK11498 308 -----------------------------Q-------FAQE-----------------------------------V--- 313 (852)
T ss_pred -----------------------------H-------HHHH-----------------------------------C---
Confidence 1 1100 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCcEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCY 568 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~ 568 (1059)
++.|+.|++ |.|+||||+|++++. ++||||+++||||+ +.+++|+++|++| .|| ++|+
T Consensus 314 --------~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~Vgl 372 (852)
T PRK11498 314 --------GVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAM 372 (852)
T ss_pred --------CcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEE
Confidence 278999987 678999999999996 79999999999998 7999999999865 788 8999
Q ss_pred EecCccccCCCccc-------cccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccC
Q 001529 569 VQFPQRFDGIDLHD-------RYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCC 641 (1059)
Q Consensus 569 VQ~PQ~F~nid~~D-------r~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~ 641 (1059)
||+||.|+|.|+.. .+.++++.||+.+++|+|.++++++|||++++||+||
T Consensus 373 VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL---------------------- 430 (852)
T PRK11498 373 MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL---------------------- 430 (852)
T ss_pred EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH----------------------
Confidence 99999999988643 2467888999999999999999999999999999877
Q ss_pred CCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCC
Q 001529 642 GPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTT 721 (1059)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~ 721 (1059)
+|+||+++
T Consensus 431 ----------------------------------------------------------------------eeVGGfd~-- 438 (852)
T PRK11498 431 ----------------------------------------------------------------------DEIGGIAV-- 438 (852)
T ss_pred ----------------------------------------------------------------------HHhcCCCC--
Confidence 56898775
Q ss_pred CchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhh
Q 001529 722 NPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWA 801 (1059)
Q Consensus 722 ~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA 801 (1059)
+++|||++++++||++||+++|++++.+ .|++|+|++++++||.||+
T Consensus 439 -------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWa 485 (852)
T PRK11498 439 -------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWA 485 (852)
T ss_pred -------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHH
Confidence 5899999999999999999999987766 8999999999999999999
Q ss_pred ccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchhhchhHHHHHHHHHHHHHH
Q 001529 802 LGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIF 881 (1059)
Q Consensus 802 ~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~ 881 (1059)
+|++|+++ +++|++ .++|++.||++|+++++|++.++++++|+++|++|+++|+.++.+.....++ .+++++
T Consensus 486 rG~lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~~----y~lP~~ 557 (852)
T PRK11498 486 RGMVQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIAL----FVLPHM 557 (852)
T ss_pred HHHHHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHHH----HHHHHH
Confidence 99999998 468988 6899999999999999999999999999999999999999888542211112 223333
Q ss_pred HHHHHHHhh-cCCccccccccchhHHhhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCccceeeeccccchHHH
Q 001529 882 ATGILEIRW-SGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPP 960 (1059)
Q Consensus 882 ~~~lLe~~w-~G~si~~wWrne~~W~I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~wt~lliP~ 960 (1059)
+...+...| +|.....||+ +. +..+.++.++ ...+..++++++.+|+||+|+...+.. .|+|. +..|+
T Consensus 558 ~~~~l~~~~~~g~~r~~~ws-ei---ye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~-----~~~~~-~~~P~ 626 (852)
T PRK11498 558 IHASLTNSRIQGKYRHSFWS-EI---YETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE-----YVDWV-ISRPY 626 (852)
T ss_pred HHHHHHHHHhcCcchHhHHH-HH---HHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc-----ceehH-HHHHH
Confidence 333333333 3332223332 22 2333344333 333444678899999999999764432 24565 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 001529 961 TTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1011 (1059)
Q Consensus 961 ~~Llilnlvgiv~gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~ 1011 (1059)
++|+++|++|+++|+++.+.+.. ....+.+++.+|+++|++-...++.
T Consensus 627 ~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~~ 674 (852)
T PRK11498 627 IFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAVA 674 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999875322 2233446788888888776555543
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=2.6e-45 Score=322.58 Aligned_cols=80 Identities=85% Similarity=1.620 Sum_probs=42.3
Q ss_pred CCCCCCcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCccc
Q 001529 2 PKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDID 81 (1059)
Q Consensus 2 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 81 (1059)
|||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=6.6e-36 Score=361.48 Aligned_cols=357 Identities=18% Similarity=0.223 Sum_probs=245.1
Q ss_pred hhHHHHHHHHHHHHHhhheeeeccCCCc-h--------hhHHHHHHHHHHHHHHHHHhhccccccccccchHhHHhhhcC
Q 001529 251 PYRVVIILRLIILGFFLQYRVTHPVKDA-Y--------PLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYD 321 (1059)
Q Consensus 251 ~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~--------~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e 321 (1059)
..|+++++..++...|..|+....+... . .+-.+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 4677888888888999999987755322 1 11122334444444444444332211 11110 0100000
Q ss_pred CCCCCCCCCceEEEEecCCCCCCChHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhh
Q 001529 322 REGEPSQLAPVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFC 397 (1059)
Q Consensus 322 ~~~~~~~lp~VDvfV~T~dP~kEp~~v~----~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFC 397 (1059)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456799999999999 998754 5556677779998 589999999999872211
Q ss_pred hhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcc
Q 001529 398 KKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPG 477 (1059)
Q Consensus 398 kk~~IepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~ 477 (1059)
.|+ +.++++.. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 011 12333321 10
Q ss_pred hhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh
Q 001529 478 MIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM 557 (1059)
Q Consensus 478 iiqv~l~~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff 557 (1059)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 012599999988 78889999999999755 67899999999998 6899999999988
Q ss_pred c-CCCCCCcEEEEecCccccCCCcc-ccccc-hhhhhhhhhccccccCCC--cccccccceehhhhhcCCCCCCcccCCC
Q 001529 558 M-DPAYGKKTCYVQFPQRFDGIDLH-DRYAN-RNIVFFDINLKGLDGIQG--PVYVGTGCCFNRQALYGYDPVLTEEDLE 632 (1059)
Q Consensus 558 ~-Dp~~g~~va~VQ~PQ~F~nid~~-Dr~~n-~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~ 632 (1059)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+|+ ..|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 98 89999999999987631 22111 234555667788887763 57999999999999842
Q ss_pred CcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHh
Q 001529 633 PNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFM 712 (1059)
Q Consensus 633 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~ 712 (1059)
|||.. .+.
T Consensus 311 -------~~glp-----------------------------------------------------------------~L~ 318 (691)
T PRK05454 311 -------HCGLP-----------------------------------------------------------------PLP 318 (691)
T ss_pred -------hcCCc-----------------------------------------------------------------ccc
Confidence 11100 001
Q ss_pred hhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHH
Q 001529 713 EQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSD 792 (1059)
Q Consensus 713 e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~ 792 (1059)
+.| ||..++++||+++|.+|+++|||++|+++. ..+++++|+|+.+
T Consensus 319 g~~---------------------------------p~~~~~LseD~~~a~~l~~~GyrV~~~pd~-~~~~ee~P~tl~~ 364 (691)
T PRK05454 319 GRG---------------------------------PFGGHILSHDFVEAALMRRAGWGVWLAPDL-PGSYEELPPNLLD 364 (691)
T ss_pred ccC---------------------------------CCCCCcccHHHHHHHHHHHCCCEEEEcCcc-ccccccCCCCHHH
Confidence 122 344468999999999999999999999863 2348999999999
Q ss_pred HHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHH
Q 001529 793 RLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCT 849 (1059)
Q Consensus 793 ~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liyll 849 (1059)
+++||.||++|++|++.. +. .+++++.+|++|++.++.++.+...+++++
T Consensus 365 ~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~ 414 (691)
T PRK05454 365 ELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLL 414 (691)
T ss_pred HHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999862 23 578999999999987777776544444433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=6.1e-34 Score=308.95 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=146.5
Q ss_pred CcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCCcEEEEecCccc
Q 001529 497 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQRF 575 (1059)
Q Consensus 497 P~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F 575 (1059)
++++|+.|++ +.|+||||||+++...+ +++|||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 56779999999998532 68899999999998 79999999999886 98 89999999999
Q ss_pred cCCCcc-ccc-cchhhhhhhhhccccccCCC--cccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001529 576 DGIDLH-DRY-ANRNIVFFDINLKGLDGIQG--PVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 651 (1059)
Q Consensus 576 ~nid~~-Dr~-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 651 (1059)
.|.+.. .+. +-.+..|..+.+.|++.|++ .+|+||+.++||+||...
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------------- 186 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------------- 186 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------------
Confidence 998742 111 11356677788888887755 589999999999998310
Q ss_pred hhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhh
Q 001529 652 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 731 (1059)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~ 731 (1059)
..+.++||+.
T Consensus 187 ---------------------------------------------------------~~~~~i~g~g------------- 196 (254)
T cd04191 187 ---------------------------------------------------------CALPVLPGRP------------- 196 (254)
T ss_pred ---------------------------------------------------------cCCccccCCC-------------
Confidence 0001234321
Q ss_pred HhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchH
Q 001529 732 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 806 (1059)
Q Consensus 732 ~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQ 806 (1059)
||..++++||+++|++++.+||+++|.+.... .++++|+++.++++||.||++|++|
T Consensus 197 -----------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~-~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -----------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLEG-SYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -----------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCcc-eEeECCCCHHHHHHHHHHHHhhcCc
Confidence 46567999999999999999999999976442 3789999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=5.2e-31 Score=301.04 Aligned_cols=233 Identities=30% Similarity=0.410 Sum_probs=173.9
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCch
Q 001529 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPE 408 (1059)
Q Consensus 329 lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe 408 (1059)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+.| ++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~--------------~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEE--------------LGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHH--------------HHh------
Confidence 699999999999 99999999999999999995 78999999999854443222 110
Q ss_pred hhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCC
Q 001529 409 FYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGG 488 (1059)
Q Consensus 409 ~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~ 488 (1059)
+. ++ .+
T Consensus 108 ------------------------------~~--------------~~---------------------~~--------- 113 (439)
T COG1215 108 ------------------------------EY--------------GP---------------------NF--------- 113 (439)
T ss_pred ------------------------------hc--------------Cc---------------------ce---------
Confidence 00 00 00
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 001529 489 LDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCY 568 (1059)
Q Consensus 489 ~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~ 568 (1059)
+++|. ++ .++.|+||+|.++.. +.+|+|+++|||++ +.|++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 12211 22 678899999999995 67999999999998 79999999999999884 3479
Q ss_pred EecCccccCCCccccccch-----hhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCC
Q 001529 569 VQFPQRFDGIDLHDRYANR-----NIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGP 643 (1059)
Q Consensus 569 VQ~PQ~F~nid~~Dr~~n~-----~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~ 643 (1059)
+|+||.+.+.++....+.. ...|+-....+.++....++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 9999999887641111111 11222122222222244555666666665554
Q ss_pred CCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCc
Q 001529 644 RKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNP 723 (1059)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~ 723 (1059)
++.||+.
T Consensus 227 --------------------------------------------------------------------~~~g~~~----- 233 (439)
T COG1215 227 --------------------------------------------------------------------EEVGGWL----- 233 (439)
T ss_pred --------------------------------------------------------------------HHhCCCC-----
Confidence 5677644
Q ss_pred hhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001529 724 ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 803 (1059)
Q Consensus 724 ~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G 803 (1059)
..++|||.+++++||.+|||++|++++.. ++++|+|+.++++||.||++|
T Consensus 234 ----------------------------~~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 234 ----------------------------EDTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred ----------------------------CCceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHHcc
Confidence 46999999999999999999999987654 999999999999999999999
Q ss_pred chHHHhh
Q 001529 804 SIEILLS 810 (1059)
Q Consensus 804 ~lQIl~s 810 (1059)
++|++..
T Consensus 284 ~~~~~~~ 290 (439)
T COG1215 284 GLQVLLL 290 (439)
T ss_pred cceeeeh
Confidence 9999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=5.4e-29 Score=289.27 Aligned_cols=232 Identities=23% Similarity=0.265 Sum_probs=171.0
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001529 327 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 406 (1059)
Q Consensus 327 ~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~ 406 (1059)
...|.|+|+||+|| |+. .+.+|+.|+++.||| ++.++|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 884 578999999999999 589999999998744332211
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001529 407 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 486 (1059)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~ 486 (1059)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCc
Q 001529 487 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKK 565 (1059)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 565 (1059)
.|++.++.++++ ..||+|+|++++. +++||++++|+|++ ++|++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 023555555442 3499999999985 78999999999998 7999999999866 466 8
Q ss_pred EEEEecCccccCCCcc-ccc-cchhhhhhhhhccccccCCCccc-ccccceehhhhhcCCCCCCcccCCCCcccccccCC
Q 001529 566 TCYVQFPQRFDGIDLH-DRY-ANRNIVFFDINLKGLDGIQGPVY-VGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCG 642 (1059)
Q Consensus 566 va~VQ~PQ~F~nid~~-Dr~-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~ 642 (1059)
++.||..++..|.+.. .+. ..+...++....++.+-.+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999998876553211 111 11223344444444443433332 355555655554
Q ss_pred CCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCC
Q 001529 643 PRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTN 722 (1059)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~ 722 (1059)
+++||+.+
T Consensus 243 ---------------------------------------------------------------------~~vGg~~~--- 250 (444)
T PRK14583 243 ---------------------------------------------------------------------ADVGYWSP--- 250 (444)
T ss_pred ---------------------------------------------------------------------HHcCCCCC---
Confidence 56787543
Q ss_pred chhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001529 723 PASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 802 (1059)
Q Consensus 723 ~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~ 802 (1059)
++++||++++++|+.+||++.|+++... ++++|+|+.++++||.||++
T Consensus 251 ------------------------------~~i~ED~dl~~rl~~~G~~i~~~p~a~~--~~~~p~t~~~~~~Qr~RW~~ 298 (444)
T PRK14583 251 ------------------------------DMITEDIDISWKLQLKHWSVFFEPRGLC--WILMPETLRGLWKQRLRWAQ 298 (444)
T ss_pred ------------------------------CcccccHHHHHHHHHcCCeEEEeeccEE--eeeCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999987554 99999999999999999999
Q ss_pred cchHHHhhh
Q 001529 803 GSIEILLSR 811 (1059)
Q Consensus 803 G~lQIl~sk 811 (1059)
|.+|+++++
T Consensus 299 G~~~~~~~~ 307 (444)
T PRK14583 299 GGAEVFLKN 307 (444)
T ss_pred cHHHHHHHH
Confidence 999999864
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=4.8e-28 Score=281.20 Aligned_cols=289 Identities=17% Similarity=0.192 Sum_probs=195.3
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467999999999999 77 7899999999999999999999999999988554433221
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~ 485 (1059)
.++ +
T Consensus 102 ------------------------------------------~~~------------------------~---------- 105 (439)
T TIGR03111 102 ------------------------------------------QNE------------------------F---------- 105 (439)
T ss_pred ------------------------------------------HHh------------------------C----------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCC
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 564 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1059)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 121111 225699999999995 78999999999998 69999999999885 77
Q ss_pred cEEEEecCccccCCCcccc-------ccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccc
Q 001529 565 KTCYVQFPQRFDGIDLHDR-------YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIV 637 (1059)
Q Consensus 565 ~va~VQ~PQ~F~nid~~Dr-------~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 637 (1059)
+++.|+..+.- +.+..+. +..++ -+++... ..+.|. +.. ...+
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~-~~~~y~~--------------------~~l~~r-~~~--s~~~----- 210 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRC-EYFEYAQ--------------------AFLAGR-NFE--SQVN----- 210 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHh-HHHHHHH--------------------HHHhhh-HHH--HhcC-----
Confidence 67766554421 1110000 00000 0011000 000000 000 0000
Q ss_pred cccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCC
Q 001529 638 KGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGI 717 (1059)
Q Consensus 638 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~ 717 (1059)
..--..|...+||++++++.||+
T Consensus 211 ---------------------------------------------------------~~~~~sGa~~~~Rr~~l~~vggf 233 (439)
T TIGR03111 211 ---------------------------------------------------------SLFTLSGAFSAFRRETILKTQLY 233 (439)
T ss_pred ---------------------------------------------------------CeEEEccHHHhhhHHHHHHhCCC
Confidence 00001255567888888999987
Q ss_pred CCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHH-CCcEEEEeCCCCCcccccCCCCHHHHHHH
Q 001529 718 PPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHA-RGWISIYCMPPRPAFKGSAPINLSDRLNQ 796 (1059)
Q Consensus 718 ~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~-rGWrsvY~~~~~aaf~GlaP~tl~~~l~Q 796 (1059)
++ ++++||++++++++. .|+|+.|+++. .++.++|+|++++++|
T Consensus 234 ~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a--~~~~~~p~t~~~~~~Q 278 (439)
T TIGR03111 234 NS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCENA--IFYVDPIDGLNKLYTQ 278 (439)
T ss_pred CC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCCC--EEEEECCcCHHHHHHH
Confidence 65 589999999999975 69999999764 4589999999999999
Q ss_pred HHHhhccchHHHhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHHHHHhcccchh
Q 001529 797 VLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIP 863 (1059)
Q Consensus 797 R~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip 863 (1059)
|.||++|.+|++....++.. ..+.++.+++.+...+..+...+|++++.++++++.+++..+..
T Consensus 279 R~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
T TIGR03111 279 RQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVKL 342 (439)
T ss_pred HHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999975443333 34466666665545555566677888888888888887765443
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=3.1e-27 Score=271.05 Aligned_cols=232 Identities=24% Similarity=0.276 Sum_probs=168.0
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
....|.|.|+||++| |+ ..+.+|+.|+++++|| ++.++|.|||.++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~-------------------- 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR-------------------- 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH--------------------
Confidence 346899999999999 86 6789999999999999 578999999998733322111
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~ 485 (1059)
+++
T Consensus 104 -----------------------------------------~~~------------------------------------ 106 (420)
T PRK11204 104 -----------------------------------------LAA------------------------------------ 106 (420)
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCC
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGK 564 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 564 (1059)
+.|++.++.++++. .||+|+|.+++. +++||++++|+|.+ +.|++|.+++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01347778766533 499999999995 78999999999998 6999999999988 587
Q ss_pred cEEEEecCccccCCCccccccchhhh----hhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCccccccc
Q 001529 565 KTCYVQFPQRFDGIDLHDRYANRNIV----FFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGC 640 (1059)
Q Consensus 565 ~va~VQ~PQ~F~nid~~Dr~~n~~~v----Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c 640 (1059)
+++.||...+..|... ..+..+.. ++....++..-.+...+
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 208 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFT--------------------------------- 208 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceE---------------------------------
Confidence 8999999877665321 11111111 11111111000000100
Q ss_pred CCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCC
Q 001529 641 CGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPT 720 (1059)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~ 720 (1059)
--|....||+++++++||+.+
T Consensus 209 ----------------------------------------------------------~~G~~~~~rr~~l~~vgg~~~- 229 (420)
T PRK11204 209 ----------------------------------------------------------VSGVITAFRKSALHEVGYWST- 229 (420)
T ss_pred ----------------------------------------------------------ecceeeeeeHHHHHHhCCCCC-
Confidence 013334455666678888654
Q ss_pred CCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHh
Q 001529 721 TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRW 800 (1059)
Q Consensus 721 ~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RW 800 (1059)
+.++||++++++++.+||++.|+++... +++.|+|++++++||+||
T Consensus 230 --------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~Qr~RW 275 (420)
T PRK11204 230 --------------------------------DMITEDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWKQRLRW 275 (420)
T ss_pred --------------------------------CcccchHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHHHHHHH
Confidence 5789999999999999999999987554 999999999999999999
Q ss_pred hccchHHHhhh
Q 001529 801 ALGSIEILLSR 811 (1059)
Q Consensus 801 A~G~lQIl~sk 811 (1059)
++|.+|.++..
T Consensus 276 ~~G~~~~l~~~ 286 (420)
T PRK11204 276 AQGGAEVLLKN 286 (420)
T ss_pred hcCHHHHHHHH
Confidence 99999999854
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=5e-25 Score=259.35 Aligned_cols=265 Identities=20% Similarity=0.234 Sum_probs=182.1
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001529 328 QLAPVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 406 (1059)
Q Consensus 328 ~lp~VDvfV~T~dP~kEp~~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~ 406 (1059)
..|.|+|+||++| |. .++.+||-|++ ++||| ++.|+|.||+..+-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999999 97 78999999975 78996 7999999999887555543321
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001529 407 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 486 (1059)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~ 486 (1059)
++ .|
T Consensus 118 -----------------------------------------~~------------------------~~----------- 121 (504)
T PRK14716 118 -----------------------------------------AA------------------------RY----------- 121 (504)
T ss_pred -----------------------------------------HH------------------------HC-----------
Confidence 10 01
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhc--cccCc---eEEEEecCCCCCCcHHHHHHHHHhhcCCC
Q 001529 487 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSA--VLTNG---AYLLNVDCDHYFNNSKALKEAMCFMMDPA 561 (1059)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSa--v~tng---p~Il~lDcD~~~~~p~~Lr~amcff~Dp~ 561 (1059)
|++..+. .+++| .+.||+|||.+++... -...| ++|+++|||.+ ++|++|+....++.
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~--- 184 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLP--- 184 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcC---
Confidence 1222222 12222 3579999999987521 01234 99999999998 69999997655543
Q ss_pred CCCcEEEEecCccccCCCcccc----ccchhhhhhhhhccccccCCCcc-cccccceehhhhhcCCCCCCcccCCCCccc
Q 001529 562 YGKKTCYVQFPQRFDGIDLHDR----YANRNIVFFDINLKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNII 636 (1059)
Q Consensus 562 ~g~~va~VQ~PQ~F~nid~~Dr----~~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 636 (1059)
+.++||.|....+.+.+.- |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 185 ---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 185 ---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 3468999987665443322 22222222334466677787765 689999999988710
Q ss_pred ccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCC
Q 001529 637 VKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGG 716 (1059)
Q Consensus 637 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG 716 (1059)
.+.+.||
T Consensus 247 -------------------------------------------------------------------------l~~~~GG 253 (504)
T PRK14716 247 -------------------------------------------------------------------------LAAERGG 253 (504)
T ss_pred -------------------------------------------------------------------------HHhhcCC
Confidence 0122344
Q ss_pred CCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCC-------------ccc
Q 001529 717 IPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP-------------AFK 783 (1059)
Q Consensus 717 ~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~a-------------af~ 783 (1059)
. +|..+++|||+++|++++.+|||++|++.+.. +++
T Consensus 254 ~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~ 302 (504)
T PRK14716 254 Q-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATR 302 (504)
T ss_pred C-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccccc
Confidence 1 25568999999999999999999999986521 245
Q ss_pred ccCCCCHHHHHHHHHHhhccc-hHHHhhhc--cccccccCCCCCcchhhhhhhccc
Q 001529 784 GSAPINLSDRLNQVLRWALGS-IEILLSRH--CPIWYGYNGRLKLLERLAYINTIV 836 (1059)
Q Consensus 784 GlaP~tl~~~l~QR~RWA~G~-lQIl~sk~--~Pl~~g~~~~Ls~~QRl~Yl~~~l 836 (1059)
+++|+|++++++||.||+.|. +|.....- .++. .+-+.|++|...+...+
T Consensus 303 e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 303 EFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 889999999999999999995 78875321 1121 23467888887765544
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.94 E-value=1.9e-25 Score=232.46 Aligned_cols=229 Identities=35% Similarity=0.588 Sum_probs=180.4
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+|||+| |++..+..++.|+++.+||.+++.++|.|||.++-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999999 8888999999999999999988999999999876222211
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
+++..+
T Consensus 52 -----------------------------------~~~~~~--------------------------------------- 57 (234)
T cd06421 52 -----------------------------------AELGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------------HHhhcc---------------------------------------
Confidence 011000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC-CCCCCcEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD-PAYGKKTCY 568 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D-p~~g~~va~ 568 (1059)
.++.|+.+++ +.+.||||+|.+++. .+++||+.+|+|.+ ..|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0256777766 455699999999995 58999999999998 589999999999876 6 8999
Q ss_pred EecCccccCCCccc----cccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCC
Q 001529 569 VQFPQRFDGIDLHD----RYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPR 644 (1059)
Q Consensus 569 VQ~PQ~F~nid~~D----r~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~ 644 (1059)
||+++.+.+.+..+ .+......|+.....+...+....+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998877542 2333445555555555555555666777777776555
Q ss_pred CCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCch
Q 001529 645 KKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPA 724 (1059)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~ 724 (1059)
+++||++.
T Consensus 173 -------------------------------------------------------------------~~ig~~~~----- 180 (234)
T cd06421 173 -------------------------------------------------------------------DEIGGFPT----- 180 (234)
T ss_pred -------------------------------------------------------------------HHhCCCCc-----
Confidence 56787764
Q ss_pred hhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001529 725 SLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 804 (1059)
Q Consensus 725 ~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~ 804 (1059)
..+.||++++++++.+||+++|+++... ++..|.++.++++||.||.+|.
T Consensus 181 ----------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~~ 230 (234)
T cd06421 181 ----------------------------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWARGM 230 (234)
T ss_pred ----------------------------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhcCC
Confidence 3678999999999999999999988665 8999999999999999999999
Q ss_pred hHHH
Q 001529 805 IEIL 808 (1059)
Q Consensus 805 lQIl 808 (1059)
+|++
T Consensus 231 ~~~~ 234 (234)
T cd06421 231 LQIL 234 (234)
T ss_pred eeeC
Confidence 9864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=8.3e-25 Score=266.61 Aligned_cols=242 Identities=22% Similarity=0.355 Sum_probs=171.3
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001529 327 SQLAPVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 327 ~~lp~VDvfV~T~dP~kEp~~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
.+.|+|.|+||.+| |. .++.+|+.+++ ++|||. +.|+|.||+..+-|.+.+.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH--------------------
Confidence 45799999999999 97 89999999987 799995 89999977555433332211
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~ 485 (1059)
++++ ||.
T Consensus 114 -----------------------------------------l~~~------------------------~p~-------- 120 (727)
T PRK11234 114 -----------------------------------------VCAR------------------------FPN-------- 120 (727)
T ss_pred -----------------------------------------HHHH------------------------CCC--------
Confidence 1111 100
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccc---cCc--eEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVL---TNG--AYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~---tng--p~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1059)
+ +++.+.| +| .+.||+|||.++....-. +.+ +.++++|||.+ +.|++|+ .+.+|+++
T Consensus 121 ----------~-~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 121 ----------V-HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ----------c-EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 0 1333444 32 246999999998863100 133 46888999998 6999998 67888887
Q ss_pred CCCCcEEEEecCccccCCCcccc----ccchhhhhhhhhccccccCCCcc-cccccceehhhhhcCCCCCCcccCCCCcc
Q 001529 561 AYGKKTCYVQFPQRFDGIDLHDR----YANRNIVFFDINLKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNI 635 (1059)
Q Consensus 561 ~~g~~va~VQ~PQ~F~nid~~Dr----~~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~ 635 (1059)
+ ++||.|..-.+...+.. |..+....+...+++++.++|++ +.|+|++|.|++|
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 5 89999966333222222 22334445556778888887764 6788999955433
Q ss_pred cccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhC
Q 001529 636 IVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQG 715 (1059)
Q Consensus 636 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~G 715 (1059)
+++.+.|
T Consensus 242 -------------------------------------------------------------------------~al~~~g 248 (727)
T PRK11234 242 -------------------------------------------------------------------------TALLEDG 248 (727)
T ss_pred -------------------------------------------------------------------------HHHHHhc
Confidence 1234555
Q ss_pred -CCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCC---------------
Q 001529 716 -GIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPR--------------- 779 (1059)
Q Consensus 716 -G~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~--------------- 779 (1059)
|+ ||..+++|||+++|++|+.+||+++|++.+.
T Consensus 249 gg~-------------------------------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~ 297 (727)
T PRK11234 249 DGI-------------------------------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQH 297 (727)
T ss_pred CCC-------------------------------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccc
Confidence 42 4788999999999999999999999998322
Q ss_pred ------CcccccCCCCHHHHHHHHHHhhcc-chHHHhh
Q 001529 780 ------PAFKGSAPINLSDRLNQVLRWALG-SIEILLS 810 (1059)
Q Consensus 780 ------aaf~GlaP~tl~~~l~QR~RWA~G-~lQIl~s 810 (1059)
.+++++.|+|+++.++||.||.+| .+|.+..
T Consensus 298 ~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~~~ 335 (727)
T PRK11234 298 ARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGFKT 335 (727)
T ss_pred cccccceEEEEeCchhHHHHHHHHHHHHcccHHHHHHH
Confidence 336788899999999999999999 6888763
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.93 E-value=7e-25 Score=230.66 Aligned_cols=228 Identities=24% Similarity=0.335 Sum_probs=165.0
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| +++-|++.+.+. .
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---V------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---H-------------------
Confidence 57999999999 86 678999999999999998899999998 666555543321 0
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
.++..
T Consensus 54 ----------------------------~~~~~----------------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYAA----------------------------------------------- 58 (232)
T ss_pred ----------------------------HHHhh-----------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
.-+++.++.+.+++|+ ||+|+|++++. .+++||+++|+|.+ +.|++|++++.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0134888888876664 99999999995 68999999999998 6999999977788888 89999
Q ss_pred ecCccccCCCccc--ccc-chhhhhhhhhccccccCCCcc-cccccceehhhhhcCCCCCCcccCCCCcccccccCCCCC
Q 001529 570 QFPQRFDGIDLHD--RYA-NRNIVFFDINLKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRK 645 (1059)
Q Consensus 570 Q~PQ~F~nid~~D--r~~-n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~ 645 (1059)
|....+.+.+.+- ++. -....+|...+.+.......+ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 163 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFN------------------------------------- 163 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEec-------------------------------------
Confidence 9987666544221 100 000111222111111111100 12
Q ss_pred CCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001529 646 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 725 (1059)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~ 725 (1059)
|+..+||+++++++||++.
T Consensus 164 -------------------------------------------------------g~~~~~rr~~~~~vgg~~~------ 182 (232)
T cd06437 164 -------------------------------------------------------GTAGVWRKECIEDAGGWNH------ 182 (232)
T ss_pred -------------------------------------------------------cchhhhhHHHHHHhCCCCC------
Confidence 3444566777788999865
Q ss_pred hHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001529 726 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 804 (1059)
Q Consensus 726 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~ 804 (1059)
.++.||+++++||+.+||+++|++... ++...|+|+.++++||+||++|.
T Consensus 183 ---------------------------~~~~ED~~l~~rl~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ---------------------------DTLTEDLDLSYRAQLKGWKFVYLDDVV--VPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ---------------------------CcchhhHHHHHHHHHCCCeEEEeccce--eeeeCCcCHHHHHHHHHHhccCC
Confidence 367899999999999999999998654 48999999999999999999984
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.91 E-value=3e-23 Score=217.77 Aligned_cols=173 Identities=27% Similarity=0.425 Sum_probs=123.6
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGI 578 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ni 578 (1059)
+.++..++.+| .||||+|.+++... .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 66776666444 49999999999632 46899999999987 6899999999998877 89999998765432
Q ss_pred Ccccccc----chhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhh
Q 001529 579 DLHDRYA----NRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKY 654 (1059)
Q Consensus 579 d~~Dr~~----n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 654 (1059)
... .+. -....+|...+......+..+..|+++++
T Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------------------------------------- 165 (236)
T cd06435 127 EES-LFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLI---------------------------------------- 165 (236)
T ss_pred Ccc-HHHHHHhHHHHHHHHHHhccccccCceEEecceEEE----------------------------------------
Confidence 211 110 00011122222222222222333444444
Q ss_pred hhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhc
Q 001529 655 IDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVI 734 (1059)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~ 734 (1059)
++++++++||+.+
T Consensus 166 ----------------------------------------------------rr~~~~~iGgf~~--------------- 178 (236)
T cd06435 166 ----------------------------------------------------RRSALDDVGGWDE--------------- 178 (236)
T ss_pred ----------------------------------------------------EHHHHHHhCCCCC---------------
Confidence 4455567888764
Q ss_pred ccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchHHHhh
Q 001529 735 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLS 810 (1059)
Q Consensus 735 sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~s 810 (1059)
....||+++++|++.+||+..|++.... +...|.|+.++++||+||++|++|++..
T Consensus 179 ------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 ------------------WCITEDSELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred ------------------ccccchHHHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 3578999999999999999999987554 8899999999999999999999999974
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.91 E-value=2.5e-23 Score=221.05 Aligned_cols=233 Identities=24% Similarity=0.290 Sum_probs=166.5
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||+++-|.+.+.+.
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~----------------------- 53 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL----------------------- 53 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh-----------------------
Confidence 67999999999 87 7889999999999999888999999999887443322110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
. . +
T Consensus 54 --------------------------------------~-~----~---------------------------------- 56 (241)
T cd06427 54 --------------------------------------R-L----P---------------------------------- 56 (241)
T ss_pred --------------------------------------c-c----C----------------------------------
Confidence 0 0 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001245544332 23599999999995 78999999999998 6899999999988621 1289999
Q ss_pred ecCccccCCCccc--c-ccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCC
Q 001529 570 QFPQRFDGIDLHD--R-YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKK 646 (1059)
Q Consensus 570 Q~PQ~F~nid~~D--r-~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~ 646 (1059)
|.+..+++...+- + +......+|+..+++....+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 160 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIP--------------------------------------- 160 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeee---------------------------------------
Confidence 9998877643221 0 011111222223333322221111
Q ss_pred CCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhh
Q 001529 647 GKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASL 726 (1059)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~ 726 (1059)
..|+..+|++++++++||+.+
T Consensus 161 ----------------------------------------------------~~g~~~~~rr~~~~~vgg~~~------- 181 (241)
T cd06427 161 ----------------------------------------------------LGGTSNHFRTDVLRELGGWDP------- 181 (241)
T ss_pred ----------------------------------------------------cCCchHHhhHHHHHHcCCCCc-------
Confidence 124445566777788898754
Q ss_pred HHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchH
Q 001529 727 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 806 (1059)
Q Consensus 727 ~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQ 806 (1059)
...+||++.++|++.+|||++|++.. ++...|+|+.++++||.||++|.+|
T Consensus 182 --------------------------~~~~eD~~l~~rl~~~G~r~~~~~~~---~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 182 --------------------------FNVTEDADLGLRLARAGYRTGVLNST---TLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred --------------------------ccchhhHHHHHHHHHCCceEEEeccc---ccccCcHhHHHHHHHHHHHhccHHH
Confidence 36789999999999999999999642 3689999999999999999999999
Q ss_pred HHhh
Q 001529 807 ILLS 810 (1059)
Q Consensus 807 Il~s 810 (1059)
++..
T Consensus 233 ~~~~ 236 (241)
T cd06427 233 TWLV 236 (241)
T ss_pred HHHH
Confidence 9974
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.89 E-value=2.3e-23 Score=217.30 Aligned_cols=224 Identities=29% Similarity=0.421 Sum_probs=136.9
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+||++| |+ ..+.+|+.|+++++|| ++.++|+||+..+-|.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 76 4999999999999995 5999999999876222211
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
++++++ .|.
T Consensus 49 -----------------------------------~~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPR--------------------------------- 57 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCC---------------------------------
Confidence 112111 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0267777765221 23699999999996 56999999999998 5999999999998888 89999
Q ss_pred ecCccccCCCccccccchhhhhhhh----hccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCC
Q 001529 570 QFPQRFDGIDLHDRYANRNIVFFDI----NLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRK 645 (1059)
Q Consensus 570 Q~PQ~F~nid~~Dr~~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~ 645 (1059)
|++..+++ +.+ .+..-...++.. ...+....+.+.+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 121112222211 1233334444555677777776555
Q ss_pred CCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001529 646 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 725 (1059)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~ 725 (1059)
+++||+.+
T Consensus 172 ------------------------------------------------------------------~~~g~fd~------ 179 (228)
T PF13641_consen 172 ------------------------------------------------------------------EEVGGFDP------ 179 (228)
T ss_dssp ------------------------------------------------------------------HHH-S--S------
T ss_pred ------------------------------------------------------------------HHhCCCCC------
Confidence 56777654
Q ss_pred hHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001529 726 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 803 (1059)
Q Consensus 726 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G 803 (1059)
....||.++++++..+||+++|++... ++...|.++.++++||.||+.|
T Consensus 180 ---------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 ---------------------------FILGEDFDLCLRLRAAGWRIVYAPDAL--VYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ---------------------------SSSSHHHHHHHHHHHTT--EEEEEEEE--EEE--SSSTHHHHHHHHHHH--
T ss_pred ---------------------------CCcccHHHHHHHHHHCCCcEEEECCcE--EEEeCCCCHHHHHHHHhccCcC
Confidence 367899999999999999999997644 4899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.85 E-value=2.3e-19 Score=217.40 Aligned_cols=171 Identities=22% Similarity=0.294 Sum_probs=126.5
Q ss_pred CcchhhhHHHHHhh---ccccCceE--EEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCcc-ccCCCcc---cc
Q 001529 513 HKKAGAMNALIRVS---AVLTNGAY--LLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQR-FDGIDLH---DR 583 (1059)
Q Consensus 513 h~KAGaLNallrvS---av~tngp~--Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~-F~nid~~---Dr 583 (1059)
..||.|||.++... .-.+.++| |+++|||-+ ++|++|+. |-++++. . -+||.|-. ..|...+ .-
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234555 999999998 79999975 5676643 1 36998731 2222111 23
Q ss_pred ccchhhhhhhhhccccccCCCccc-ccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhh
Q 001529 584 YANRNIVFFDINLKGLDGIQGPVY-VGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMK 662 (1059)
Q Consensus 584 ~~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 662 (1059)
|+.+....|+..|+++..+.+++. .|||++|||.||-
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~------------------------------------------ 250 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL------------------------------------------ 250 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH------------------------------------------
Confidence 667778888889999999999876 6799999998881
Q ss_pred cccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhccccccccc
Q 001529 663 RTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKT 742 (1059)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T 742 (1059)
.+.+.||..
T Consensus 251 -----------------------------------------------~l~~~gg~~------------------------ 259 (703)
T PRK15489 251 -----------------------------------------------ALMKERGNQ------------------------ 259 (703)
T ss_pred -----------------------------------------------HHHHhcCCC------------------------
Confidence 012334421
Q ss_pred ccccccCcccccccchHHHHHHHHHCCcEEEEeCC---------------------CCCcccccCCCCHHHHHHHHHHhh
Q 001529 743 EWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMP---------------------PRPAFKGSAPINLSDRLNQVLRWA 801 (1059)
Q Consensus 743 ~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~---------------------~~aaf~GlaP~tl~~~l~QR~RWA 801 (1059)
+|..+|+|||++.|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||-
T Consensus 260 ------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~ 333 (703)
T PRK15489 260 ------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWV 333 (703)
T ss_pred ------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHH
Confidence 47889999999999999999999999322 124567889999999999999999
Q ss_pred ccch-HHHh
Q 001529 802 LGSI-EILL 809 (1059)
Q Consensus 802 ~G~l-QIl~ 809 (1059)
.|-. |-..
T Consensus 334 ~Gi~~q~~~ 342 (703)
T PRK15489 334 LGIAFQGWE 342 (703)
T ss_pred hHHHHhhHH
Confidence 9987 7754
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.85 E-value=1.1e-19 Score=207.17 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=158.5
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001529 327 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 406 (1059)
Q Consensus 327 ~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~ 406 (1059)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||++++-|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34899999999999 875 5679999999999995 78999999887643332111
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001529 407 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 486 (1059)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~ 486 (1059)
+.++ ||.
T Consensus 91 ----------------------------------------~~~~------------------------~p~--------- 97 (373)
T TIGR03472 91 ----------------------------------------LRAD------------------------FPD--------- 97 (373)
T ss_pred ----------------------------------------HHHh------------------------CCC---------
Confidence 1100 000
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcE
Q 001529 487 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKT 566 (1059)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v 566 (1059)
.++.++.+.++.| .+.|++|+|++++. +.+|+|+++|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1366665544333 45799999998874 78999999999998 6999999999999998 89
Q ss_pred EEEecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCC
Q 001529 567 CYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKK 646 (1059)
Q Consensus 567 a~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~ 646 (1059)
+.|+.+.+..+ ... +.++.... ..+.. ++-+. ... ...|
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~~------~~~~~---~~~~~--~~~--~~~~------------------------- 195 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGAM------GINHN---FLPSV--MVA--RALG------------------------- 195 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHHH------Hhhhh---hhHHH--HHH--Hhcc-------------------------
Confidence 99998644221 111 11111000 00000 00000 000 0000
Q ss_pred CCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhh
Q 001529 647 GKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASL 726 (1059)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~ 726 (1059)
......|++.+||+++++++||++..
T Consensus 196 ------------------------------------------------~~~~~~G~~~a~RR~~l~~iGGf~~~------ 221 (373)
T TIGR03472 196 ------------------------------------------------RARFCFGATMALRRATLEAIGGLAAL------ 221 (373)
T ss_pred ------------------------------------------------CCccccChhhheeHHHHHHcCChHHh------
Confidence 00012466777888888999998631
Q ss_pred HHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001529 727 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 804 (1059)
Q Consensus 727 ~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~ 804 (1059)
.++++||++++.+++.+||++.|.+.... ....|+|++++++||.||++..
T Consensus 222 -------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 -------------------------AHHLADDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred -------------------------cccchHHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHhhh
Confidence 14688999999999999999999876443 6788899999999999997543
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.85 E-value=3.7e-21 Score=206.24 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=47.2
Q ss_pred ccccchHHHHHHHHHCCcEEEE--eCCCCCcccccCCCCHHHHHHHHHHhhccchH
Q 001529 753 GSVTEDILTGFKMHARGWISIY--CMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 806 (1059)
Q Consensus 753 gsVTEDi~TglrLh~rGWrsvY--~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQ 806 (1059)
.+++||.+++++|..+||++.| ++...+ +.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~--~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPGAVA--ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecccEE--EEECCCCHHHHHHHhHhhhccccc
Confidence 4799999999999999999999 766554 999999999999999999999863
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.82 E-value=2.5e-19 Score=185.33 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=154.6
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001529 334 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQ 413 (1059)
Q Consensus 334 vfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~YFs~ 413 (1059)
|+|||+| |+ ..+.+||.|+++.+||.+++.|+|.|||++.-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 76 78999999999999999889999999998763333211
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCC
Q 001529 414 KIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDG 493 (1059)
Q Consensus 414 k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~d~~~ 493 (1059)
|. + +
T Consensus 48 -----------------------~~--------~--~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------A--A------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------H--h-------------------------------------------
Confidence 00 0 0
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCc
Q 001529 494 NELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQ 573 (1059)
Q Consensus 494 ~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ 573 (1059)
...|++.++.++. + ....|+.++|.++.. ++++||+++|+|.+ ..|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355665543 1 235689999999985 68999999999998 6899999999987765 677888888
Q ss_pred cccCCCcc-ccccchhhhhhhhhccccccCCCc-ccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001529 574 RFDGIDLH-DRYANRNIVFFDINLKGLDGIQGP-VYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 651 (1059)
Q Consensus 574 ~F~nid~~-Dr~~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 651 (1059)
.+...+.. ..+..-...+......+..+++.+ ...|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------------------- 158 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGA----------------------------------------- 158 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccc-----------------------------------------
Confidence 87622211 111110000111111111111111 11233
Q ss_pred hhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhh
Q 001529 652 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 731 (1059)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~ 731 (1059)
+..|++++++++||+++.
T Consensus 159 ---------------------------------------------------~~~~rr~~~~~~ggf~~~----------- 176 (229)
T cd04192 159 ---------------------------------------------------NMAYRKEAFFEVGGFEGN----------- 176 (229)
T ss_pred ---------------------------------------------------eEEEEHHHHHHhcCCccc-----------
Confidence 334455566788998641
Q ss_pred HhcccccccccccccccCcccccccchHHHHHHHHHCCc-EEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001529 732 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGW-ISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 803 (1059)
Q Consensus 732 ~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGW-rsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G 803 (1059)
....+||.++.++++.+|| ++.|+..+...++...|.++.++++||+||++|
T Consensus 177 --------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 --------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred --------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 1367899999999999999 999986655666899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.81 E-value=8e-19 Score=181.02 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=146.9
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+||++| |... +..++-|+++.+||. +.++|.|||++.-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999999 7654 689999999999985 88999999998744332211
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
+.++ ||. .
T Consensus 51 -------------------------------------~~~~------------------------~~~---------~-- 58 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPN---------V-- 58 (196)
T ss_pred -------------------------------------HHHH------------------------CCC---------C--
Confidence 1100 000 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
++.|+..+++.| ...|++|||.+++. .+++|++++|+|.. ..|++|.+.+..+.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 144554443222 23689999999985 78999999999997 5899999999988888 67788
Q ss_pred ecCccccCCCccccccchhhhhhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCC
Q 001529 570 QFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKG 649 (1059)
Q Consensus 570 Q~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~ 649 (1059)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 45577888887665
Q ss_pred CChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHH
Q 001529 650 SNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKE 729 (1059)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~e 729 (1059)
+++||++..
T Consensus 137 --------------------------------------------------------------~~~ggf~~~--------- 145 (196)
T cd02520 137 --------------------------------------------------------------DAIGGFEAF--------- 145 (196)
T ss_pred --------------------------------------------------------------HhccChHHH---------
Confidence 356665420
Q ss_pred hhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001529 730 AIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 802 (1059)
Q Consensus 730 a~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~ 802 (1059)
...+.||++.++++..+||++.|++... ++...|.++.++++||.||++
T Consensus 146 ----------------------~~~~~eD~~l~~rl~~~G~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 146 ----------------------ADYLAEDYFLGKLIWRLGYRVVLSPYVV--MQPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred ----------------------hHHHHHHHHHHHHHHHcCCeEEEcchhe--eccCCcccHHHHHHHHHHHhc
Confidence 1246899999999999999999998754 488999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.77 E-value=6.1e-18 Score=176.99 Aligned_cols=58 Identities=26% Similarity=0.151 Sum_probs=51.8
Q ss_pred CcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCC
Q 001529 513 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGID 579 (1059)
Q Consensus 513 h~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 579 (1059)
..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 4499999999985 68999999999998 6899999999998888 899999999887764
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.76 E-value=3.4e-17 Score=173.60 Aligned_cols=128 Identities=25% Similarity=0.325 Sum_probs=98.9
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
....|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999999 76 778999999999999988899999999998733221110
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~ 485 (1059)
+.++
T Consensus 81 -----------------------------------------~~~~----------------------------------- 84 (251)
T cd06439 81 -----------------------------------------YADK----------------------------------- 84 (251)
T ss_pred -----------------------------------------HhhC-----------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCc
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKK 565 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~ 565 (1059)
++.++..+++ ..|++|+|.+++. .++++|+++|+|.++ .|++|.+.+..|.++ +
T Consensus 85 ------------~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 85 ------------GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ------------cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 1445555443 3499999999995 678999999999985 699999999999877 7
Q ss_pred EEEEecCccccCCC
Q 001529 566 TCYVQFPQRFDGID 579 (1059)
Q Consensus 566 va~VQ~PQ~F~nid 579 (1059)
+++|+......+.+
T Consensus 139 ~~~v~~~~~~~~~~ 152 (251)
T cd06439 139 VGAVSGELVIVDGG 152 (251)
T ss_pred ccEEEeEEEecCCc
Confidence 88999877765443
No 34
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=8e-15 Score=167.92 Aligned_cols=213 Identities=22% Similarity=0.343 Sum_probs=160.0
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCcEEEEecCcccc
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCYVQFPQRFD 576 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~ 576 (1059)
++.|-.|.+ |...||||+...+|.-| +..+++++||||.+ -..+.+-+.+-.| .|| +.|++||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 477777766 66779999999999876 77899999999998 4888999999888 577 899999976655
Q ss_pred CCCccccccc----hhhhhhhhhccccccCCC--cccccccceehhhhhc---CCCCCCcccCCCCcccccccCCCCCCC
Q 001529 577 GIDLHDRYAN----RNIVFFDINLKGLDGIQG--PVYVGTGCCFNRQALY---GYDPVLTEEDLEPNIIVKGCCGPRKKG 647 (1059)
Q Consensus 577 nid~~Dr~~n----~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALy---G~~p~~~~~~~~~~~~~~~c~~~~~~~ 647 (1059)
|.|. .|+- ...|+=-+.--|+..||+ .-|-|.|++.|-+|+. |+.|
T Consensus 282 gg~T--L~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~----------------------- 336 (736)
T COG2943 282 GGDT--LYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPP----------------------- 336 (736)
T ss_pred Ccch--HHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCC-----------------------
Confidence 5542 2221 123444556678888887 4689999999988873 2111
Q ss_pred CCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhH
Q 001529 648 KGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLL 727 (1059)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~ 727 (1059)
++| + ...||
T Consensus 337 --------------------------------LpG--------------~--------------~pFgG----------- 345 (736)
T COG2943 337 --------------------------------LPG--------------R--------------GPFGG----------- 345 (736)
T ss_pred --------------------------------CCC--------------C--------------CCCCc-----------
Confidence 000 0 01233
Q ss_pred HHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchHH
Q 001529 728 KEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEI 807 (1059)
Q Consensus 728 ~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQI 807 (1059)
..++.|+.-+-.|.+.||. +...+.+...|++.|.|+-|.+++-+||++|++|-
T Consensus 346 -------------------------~ilSHDfvEAALmRRaGW~-v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh 399 (736)
T COG2943 346 -------------------------HILSHDFVEAALMRRAGWG-VWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQH 399 (736)
T ss_pred -------------------------cccchHHHHHHHHhhcCce-EEEeccCCCchhhCCchHHHHHhhhhHhhhcchhh
Confidence 3578899999999999996 55556688889999999999999999999999998
Q ss_pred HhhhccccccccCCCCCcchhhhhhhccchhhhHHHHHHHHHH
Q 001529 808 LLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTL 850 (1059)
Q Consensus 808 l~sk~~Pl~~g~~~~Ls~~QRl~Yl~~~ly~l~sl~~liylll 850 (1059)
++ ++. .++|.|..|+.++.+++.|+.+...++++++
T Consensus 400 ~r-----l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~ 435 (736)
T COG2943 400 FR-----LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFLLL 435 (736)
T ss_pred ce-----eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 75 332 5899999999999998888776444444333
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.74 E-value=3.3e-16 Score=179.51 Aligned_cols=134 Identities=24% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
+...|+|.|+||++| |. ..+.+++-|+++.|||. ++.|+|.|||+++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 86 67889999999999995 489999999998744432211
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~ 485 (1059)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccc-CceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCC
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLT-NGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGK 564 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~t-ngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~ 564 (1059)
-+++.++..+.+|. .-..|+.|+|.+++.+.... ++++|+.+|+|.. ..|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01355555443332 34579999999999642111 1899999999998 6899999999998876
Q ss_pred cEEEEecCc
Q 001529 565 KTCYVQFPQ 573 (1059)
Q Consensus 565 ~va~VQ~PQ 573 (1059)
++++|..+-
T Consensus 162 ~~~~vs~~~ 170 (384)
T TIGR03469 162 GLDLVSLMV 170 (384)
T ss_pred CCCEEEecc
Confidence 455665433
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.68 E-value=2.5e-15 Score=157.47 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchHHHhh
Q 001529 755 VTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLS 810 (1059)
Q Consensus 755 VTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl~s 810 (1059)
..||.+++++++.+|+++.|++.... ....+.+++.+.+|+.||+.|..|.+..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 46999999999999999999987654 6778999999999999999999999974
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.66 E-value=1e-15 Score=156.84 Aligned_cols=138 Identities=26% Similarity=0.340 Sum_probs=105.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccchhhhhhhhhc----cccccCCC-cccc
Q 001529 534 YLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINL----KGLDGIQG-PVYV 608 (1059)
Q Consensus 534 ~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~----~glDg~qg-p~yv 608 (1059)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|+.+++ .++...+.+..+|.... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999998 6899999999999888 8999999999873 34445555555553221 11112222 2345
Q ss_pred cccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCccccchhhhhccCCchhhHh
Q 001529 609 GTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERS 688 (1059)
Q Consensus 609 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1059)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 66666666554
Q ss_pred hhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHC
Q 001529 689 LLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHAR 768 (1059)
Q Consensus 689 ~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~r 768 (1059)
+++||++. ..+++||+++++++.++
T Consensus 85 -----------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~ 109 (193)
T PF13632_consen 85 -----------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRA 109 (193)
T ss_pred -----------------------HHhCcccc--------------------------------cccccchHHHHHHHHHC
Confidence 56777540 35899999999999999
Q ss_pred CcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001529 769 GWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 804 (1059)
Q Consensus 769 GWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~ 804 (1059)
||++.|+++.. ++..+|.|+.++++||+||+.|.
T Consensus 110 G~~~~~~~~~~--~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 110 GYRIVYVPDAI--VYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred CCEEEEecccc--eeeeCCCCHHHHHHHHHHHHhhh
Confidence 99999998753 48999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.54 E-value=5.4e-14 Score=145.23 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=81.6
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhc-------cccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEe
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSA-------VLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQ 570 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSa-------v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ 570 (1059)
++.++.++.. + ....|++|||.+++.+. .-..+++|+++|+|.. ..|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 4677766421 1 23359999999998631 0012489999999998 6999999988899888 899999
Q ss_pred cCccccCCCccc--c-ccchhhhhhhhhccccccCCCcccccccceehhhhh
Q 001529 571 FPQRFDGIDLHD--R-YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQAL 619 (1059)
Q Consensus 571 ~PQ~F~nid~~D--r-~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 619 (1059)
.+.++.|.+.+- + +..+...++.+++.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998866442 1 122333344556666666655557899999998777
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.43 E-value=6.1e-13 Score=135.73 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCcchhhhHHHHHhhc-cccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCC
Q 001529 512 HHKKAGAMNALIRVSA-VLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGID 579 (1059)
Q Consensus 512 hh~KAGaLNallrvSa-v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 579 (1059)
+..|++|+|.+++... .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 3459999999988631 1247999999999998 6899999999988653 34688877766544
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.42 E-value=4.4e-12 Score=129.62 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=89.6
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|+|||+| |....+.+|+.|+++.+||. +.++|+|||...-|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 76678899999999999984 68999999987522211110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~ 489 (1059)
+ +.++
T Consensus 52 --------------------------~----------~~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------K----------YAAQ--------------------------------------- 56 (202)
T ss_pred --------------------------H----------HHhc---------------------------------------
Confidence 0 1000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCcEEE
Q 001529 490 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCY 568 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~ 568 (1059)
.+++.++..+.+ ..+|.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREEN-----GGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEcccC-----CCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 013555555443 3479999999985 67899999999998 6999999999987 777 6777
Q ss_pred EecCccc
Q 001529 569 VQFPQRF 575 (1059)
Q Consensus 569 VQ~PQ~F 575 (1059)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7665543
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.38 E-value=1.2e-11 Score=126.63 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=52.7
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCCcEEEEecCccccC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQRFDG 577 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F~n 577 (1059)
+.|+.+++.. .+++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~-----G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNR-----GLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCccc-----cHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 6677776533 489999999985 68999999999998 68999999999884 56 7888887665543
Q ss_pred C
Q 001529 578 I 578 (1059)
Q Consensus 578 i 578 (1059)
.
T Consensus 123 ~ 123 (201)
T cd04195 123 S 123 (201)
T ss_pred C
Confidence 3
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.24 E-value=3.1e-11 Score=124.93 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=109.8
Q ss_pred CCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCccccccch-hhh
Q 001529 512 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANR-NIV 590 (1059)
Q Consensus 512 hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~-~~v 590 (1059)
-+.|..||.++++. ...+++|+++|+|+. .+|++|++.+.-|.|| ++++|..+.++.+.+. +... ...
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~---~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARG---FWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcC---HHHHHHHH
Confidence 47799999999984 278999999999998 5899999999999999 8999988777655442 2111 112
Q ss_pred hhhhhcccc-c-cCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCC
Q 001529 591 FFDINLKGL-D-GIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTV 668 (1059)
Q Consensus 591 Ffdi~~~gl-D-g~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1059)
|+. ..++. . .-..++.
T Consensus 84 ~~~-~~~~~~~a~~~~~~~------------------------------------------------------------- 101 (175)
T PF13506_consen 84 FFN-FLPGVLQALGGAPFA------------------------------------------------------------- 101 (175)
T ss_pred HHh-HHHHHHHHhcCCCce-------------------------------------------------------------
Confidence 221 00000 0 0011122
Q ss_pred ccccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhccccccccccccccc
Q 001529 669 PIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEI 748 (1059)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~ev 748 (1059)
+|.+..||+++|+++||+...
T Consensus 102 -------------------------------~G~~m~~rr~~L~~~GG~~~l---------------------------- 122 (175)
T PF13506_consen 102 -------------------------------WGGSMAFRREALEEIGGFEAL---------------------------- 122 (175)
T ss_pred -------------------------------ecceeeeEHHHHHHcccHHHH----------------------------
Confidence 455666677777888987531
Q ss_pred CcccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCC----CCHHHHHHHHHHhhc
Q 001529 749 GWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAP----INLSDRLNQVLRWAL 802 (1059)
Q Consensus 749 GW~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP----~tl~~~l~QR~RWA~ 802 (1059)
.+.++||+.+|-+++.+|||+++.+.+.. ....| .++.++++++.||++
T Consensus 123 ---~~~ladD~~l~~~~~~~G~~v~~~~~~v~--~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 123 ---ADYLADDYALGRRLRARGYRVVLSPYPVV--QTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ---hhhhhHHHHHHHHHHHCCCeEEEcchhee--ecccCccccccHHHHHHHHHhhcC
Confidence 14799999999999999999999975332 44555 589999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.24 E-value=1.9e-10 Score=116.00 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=43.5
Q ss_pred cchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCCcEEEEecCccccC
Q 001529 514 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC-FMMDPAYGKKTCYVQFPQRFDG 577 (1059)
Q Consensus 514 ~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~n 577 (1059)
.+++|+|.+++. .+++||+++|+|-+ ..++.+.+.+. +..++ ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 489999999995 68999999999998 57899999984 55666 5667766655543
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.16 E-value=7.3e-10 Score=122.31 Aligned_cols=109 Identities=22% Similarity=0.171 Sum_probs=83.3
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001529 334 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQ 413 (1059)
Q Consensus 334 vfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~YFs~ 413 (1059)
|+|||+| |++..+.+||.|+++..||.....|+|.|||++.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 888999999999999999865678999999998743332211
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCC
Q 001529 414 KIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDG 493 (1059)
Q Consensus 414 k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~d~~~ 493 (1059)
+.. .
T Consensus 51 -------------------------~~~--------~------------------------------------------- 54 (299)
T cd02510 51 -------------------------EYY--------K------------------------------------------- 54 (299)
T ss_pred -------------------------HHH--------h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001529 494 NELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 559 (1059)
Q Consensus 494 ~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1059)
...|++.++..+++ ..++.|.|.+++. +.|+||+.+|+|.+ +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 01134677766653 3488999999995 78999999999998 589999999997754
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.14 E-value=7.4e-10 Score=113.63 Aligned_cols=120 Identities=23% Similarity=0.274 Sum_probs=89.0
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhh
Q 001529 333 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFA 412 (1059)
Q Consensus 333 DvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~Pe~YFs 412 (1059)
.|+||||| |+ ..+.+++.|++..+|| ++.++|+|||+.+-|.+.+.+
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~--------------------------- 47 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE--------------------------- 47 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH---------------------------
Confidence 37999998 76 6789999999999999 689999999998744433211
Q ss_pred cccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCC
Q 001529 413 QKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTD 492 (1059)
Q Consensus 413 ~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g~~d~~ 492 (1059)
++++ ||
T Consensus 48 ----------------------------------~~~~------------------------~~---------------- 53 (214)
T cd04196 48 ----------------------------------YIDK------------------------DP---------------- 53 (214)
T ss_pred ----------------------------------HHhc------------------------CC----------------
Confidence 1100 00
Q ss_pred CCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHh-hcCCCCCCcEEEEec
Q 001529 493 GNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCF-MMDPAYGKKTCYVQF 571 (1059)
Q Consensus 493 ~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~va~VQ~ 571 (1059)
+.+.++..+++ +.+++|+|.+++. ++|+||+++|+|-+ ..|+.|.+.+.. +.+| +.+++..
T Consensus 54 ----~~~~~~~~~~~-----~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~ 115 (214)
T cd04196 54 ----FIIILIRNGKN-----LGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYS 115 (214)
T ss_pred ----ceEEEEeCCCC-----ccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEec
Confidence 12455555543 3489999999884 78999999999998 589999999997 5555 6777888
Q ss_pred CccccC
Q 001529 572 PQRFDG 577 (1059)
Q Consensus 572 PQ~F~n 577 (1059)
...+.+
T Consensus 116 ~~~~~~ 121 (214)
T cd04196 116 DLELVD 121 (214)
T ss_pred CcEEEC
Confidence 765543
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.11 E-value=2.3e-09 Score=111.18 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=34.7
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001529 332 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 377 (1059)
Q Consensus 332 VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 377 (1059)
|.|+||++| |+. .+..++.|+++..|+ ...++|.|||+..
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 764 779999999999984 6789999999876
No 47
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.11 E-value=2e-09 Score=105.44 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=41.4
Q ss_pred CcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCCcEEEEecC
Q 001529 513 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFP 572 (1059)
Q Consensus 513 h~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~P 572 (1059)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| ++++|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 3489999999995 58999999999998 68899999987554 44 67777655
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.10 E-value=3.2e-09 Score=106.85 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=41.2
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1059)
++++.+++ +...|++|+|.+++. ++|+||+.+|+|-+ +.|++|.+.+-++ ++
T Consensus 55 ~~~~~~~~----~~~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 55 IKHVWQED----EGFRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred eEEEEcCC----cchhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 45555443 223689999999985 78999999999997 6899999999887 44
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.04 E-value=8.5e-09 Score=110.46 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=46.4
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFP 572 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 572 (1059)
+.++.+++.. .|++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.++ +..+|...
T Consensus 70 v~~~~~~~n~-----G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKL-----GLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCC-----CHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 5666655433 389999999985 68999999999998 6999999999888765 44555543
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.02 E-value=1.2e-10 Score=96.11 Aligned_cols=48 Identities=33% Similarity=0.954 Sum_probs=30.5
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
|.+|.+++ +++|..|.+| ||+|.|||.||...++++++.||+||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999989999999999996
No 51
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.99 E-value=9.1e-09 Score=107.75 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=35.8
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001529 334 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTF 380 (1059)
Q Consensus 334 vfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 380 (1059)
|+|||+| ++ ..+..|+-|+++.+|| +...++|.|||+..-|.
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~ 42 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSA 42 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHH
Confidence 6899998 54 7999999999999998 45899999999887443
No 52
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.99 E-value=4.3e-09 Score=110.56 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=45.9
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHH---Hhh-cCCCCCCcEEEEecCcc
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAM---CFM-MDPAYGKKTCYVQFPQR 574 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am---cff-~Dp~~g~~va~VQ~PQ~ 574 (1059)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+ .+| +++.+ .|+.
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 67777766444 99999999986321 15699999999998 5899999985 333 344 56654 4554
Q ss_pred c
Q 001529 575 F 575 (1059)
Q Consensus 575 F 575 (1059)
.
T Consensus 117 ~ 117 (237)
T cd02526 117 I 117 (237)
T ss_pred E
Confidence 3
No 53
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.98 E-value=6e-09 Score=100.82 Aligned_cols=63 Identities=33% Similarity=0.429 Sum_probs=47.8
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCCcEEEEecCccc
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC-FMMDPAYGKKTCYVQFPQRF 575 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F 575 (1059)
++|+..++.. .|+.|+|.+++. .++++|+.+|+|.+ ..+++|.+.+. ++.++ +++.|...+..
T Consensus 55 ~~~~~~~~~~-----g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKENG-----GKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEecccC-----CchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 5566555533 499999999996 58999999999998 58999999944 55666 66777655543
No 54
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.98 E-value=1.1e-07 Score=113.41 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHHC--CcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchHHH
Q 001529 754 SVTEDILTGFKMHAR--GWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIL 808 (1059)
Q Consensus 754 sVTEDi~TglrLh~r--GWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~lQIl 808 (1059)
.+.||=.++..|.++ |||..|++.+.+ +-.+|++++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhH
Confidence 578998888777776 899999988776 89999999999999999999998543
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.97 E-value=2.5e-08 Score=103.65 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=47.0
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFP 572 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 572 (1059)
+.++..+++.| |++|+|.+++. +.|+||+.+|+|.. ..|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 45555665444 89999999995 67899999999997 6899999999987766 44555554
No 56
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.95 E-value=1.2e-08 Score=104.95 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=45.3
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
+.|+.-++. +..+.++|.++...- ...++|++.+|+|.+ ..|++|++.+..+.+| +++.|
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~ 112 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL 112 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe
Confidence 556655542 236888898887532 457899999999998 6899999999988777 56665
No 57
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.92 E-value=1.7e-09 Score=104.93 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=75.6
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 577 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1059)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++ +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 489999987 33 699999999995 78899999999998 5778999999999874 123444444444333
Q ss_pred CCcccccc--chhhhhhhhhccccccCCCcccccccceehhhhh
Q 001529 578 IDLHDRYA--NRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQAL 619 (1059)
Q Consensus 578 id~~Dr~~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 619 (1059)
........ .....++..............++|.++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 32222211 1223444445556667778899999999999998
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.73 E-value=1.5e-07 Score=98.00 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=46.3
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCcc
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQR 574 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~ 574 (1059)
+.++..++..| |++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+..+.++ ....|.....
T Consensus 59 i~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 59 IRVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred EEEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 35555554333 89999999995 68899999999998 6899999999987654 3344555433
No 59
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.65 E-value=2.3e-07 Score=93.42 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 577 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1059)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+..+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666444 99999999985 67899999999987 5899999999986655 4667777766554
No 60
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.64 E-value=7.2e-07 Score=97.59 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=49.8
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccc
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRF 575 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 575 (1059)
.+.|+..++.-| .|||+|.+++.. .-.+++||+.+|.|-+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 477777665444 799999998852 1237899999999998 5799999999887642 22678776 4433
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.61 E-value=1.3e-06 Score=97.11 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=42.9
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 559 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1059)
++.|+..++.. .+|.|+|.++.. ++|+||+.+|+|.+ ..|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n~-----G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDINS-----GACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 58888776533 389999999985 79999999999998 578999998887643
No 62
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.61 E-value=1.1e-06 Score=99.74 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=83.3
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001529 328 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 407 (1059)
Q Consensus 328 ~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~IepR~P 407 (1059)
..|.|.|+||+|| ++ ..+.+++-|+++..|+ .+.|+|.|||+++-|.+-+.
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~----------------------- 54 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAK----------------------- 54 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHH-----------------------
Confidence 3578999999999 55 6889999999999997 57899999999873332211
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001529 408 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 487 (1059)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYeefk~rI~~L~~~~~~~p~~~w~m~dg~~w~g~~~~dHp~iiqv~l~~~g 487 (1059)
+| ++
T Consensus 55 ----------------------------~~----------~~-------------------------------------- 58 (328)
T PRK10073 55 ----------------------------HY----------AE-------------------------------------- 58 (328)
T ss_pred ----------------------------HH----------Hh--------------------------------------
Confidence 11 10
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001529 488 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1059)
+.|++.++..+ ....++|.|.++.. ..|+||+.+|+|-+ ..|++|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01246666532 23489999999995 79999999999998 5899999999887644
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.57 E-value=2.1e-06 Score=93.59 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=36.8
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhHH
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGSAMLTFE 381 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~-DYP~~kl~~yvsDDG~~~ltf~ 381 (1059)
|.|.|+||||| |+ ..+..|+.|++++ ..+...+.++|.|||+++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 56899999999 64 5789999999864 2333468899999999874443
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.45 E-value=4e-06 Score=79.20 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=41.6
Q ss_pred CCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCCcEEEEecC
Q 001529 512 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC-FMMDPAYGKKTCYVQFP 572 (1059)
Q Consensus 512 hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~P 572 (1059)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +..+|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 34599999999986 47999999999998 58889988744 45555 67778777
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.40 E-value=3e-06 Score=85.91 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=63.6
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 577 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1059)
++.|+..++. ..|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++ +.++.+..... .+
T Consensus 56 ~i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~--~~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEE--GYDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhC--CCcEEEEEecC--Cc
Confidence 3666665542 3499999999985 67899999999998 689999999987 443 12444433222 22
Q ss_pred CCc-cccccchhhhhhhhhccccccCCCcccccccceehhhhhc
Q 001529 578 IDL-HDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALY 620 (1059)
Q Consensus 578 id~-~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 620 (1059)
+. ..++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 -~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 -ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred -chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 1111111 1111 11222334445666778899999984
No 66
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.34 E-value=1.3e-05 Score=88.73 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=46.1
Q ss_pred CcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcc
Q 001529 513 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLH 581 (1059)
Q Consensus 513 h~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~ 581 (1059)
-.+|.|.|.++.. +++++|+.+|+|.+ +.|++|.+++-+...=. ....+++-.|..|.+.+..
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 3699999999985 79999999999998 68999999999321100 0134566667777655443
No 67
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.30 E-value=1.6e-05 Score=98.64 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=46.1
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccch
Q 001529 754 SVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSI 805 (1059)
Q Consensus 754 sVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~G~l 805 (1059)
+..||=.+..++..+||+.-|+....+ ...+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhcccch
Confidence 489999999999999999999987666 89999999999999999999933
No 68
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.28 E-value=2.4e-05 Score=87.56 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=51.9
Q ss_pred CcEEEEeccCCCCCCCCcchhhhHHHHHhhccccCce-EEEEecCCCCCCcHHHHHHHHHhhc-CCCCCCcEEEEecCcc
Q 001529 497 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGA-YLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQR 574 (1059)
Q Consensus 497 P~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp-~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~ 574 (1059)
|.+.|+.-.+.-|+ ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .++.|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 34777777776675 89999888752 34544 9999999976 79999999998774 44 7888887766
Q ss_pred ccC
Q 001529 575 FDG 577 (1059)
Q Consensus 575 F~n 577 (1059)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.23 E-value=2.9e-05 Score=88.40 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=39.9
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 559 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1059)
+..+..++. ..|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 139 i~vi~~~~N-----~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 139 IRLLSLLRN-----KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred EEEEEcCCC-----CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 455554432 3499999999985 68999999999997 688998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.10 E-value=1.9e-05 Score=89.04 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=42.7
Q ss_pred CcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCCcEEEEec
Q 001529 513 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQF 571 (1059)
Q Consensus 513 h~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~ 571 (1059)
..|++|+|.+++. ++|++|+.+|||....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 3599999999985 78999999999985458999999998775 77 6777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.54 E-value=0.0009 Score=76.12 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=35.6
Q ss_pred cchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhc
Q 001529 514 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM 558 (1059)
Q Consensus 514 ~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 558 (1059)
.|++|+|++++. +.|++++.+|||.. ..|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 589999999985 68999999999998 78999999988774
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.38 E-value=0.0053 Score=70.31 Aligned_cols=159 Identities=28% Similarity=0.403 Sum_probs=110.6
Q ss_pred CCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE-ecCccccCCCccccccchhhh
Q 001529 512 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV-QFPQRFDGIDLHDRYANRNIV 590 (1059)
Q Consensus 512 hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V-Q~PQ~F~nid~~Dr~~n~~~v 590 (1059)
-+-|--||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 35577777777775 67899999999988 59999999888898875 89998 7776654221
Q ss_pred hhhhhccccccCCCcccccccceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCChhhhhhhhhhhcccCCCcc
Q 001529 591 FFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPI 670 (1059)
Q Consensus 591 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1059)
|+.-. .-+|-||. +-|--|-|- -..++ |.
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~n---------~~~~~---c~----------------------------- 244 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSGN---------VLGFN---CS----------------------------- 244 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEccc---------ccccc---cc-----------------------------
Confidence 11111 11555654 223222110 00111 11
Q ss_pred ccchhhhhccCCchhhHhhhhhhHHHHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCc
Q 001529 671 FNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGW 750 (1059)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW 750 (1059)
=|-|..+|+++++|.||+... |
T Consensus 245 -----------------------------tgms~~mrK~~ld~~ggi~~f----------------------------~- 266 (431)
T KOG2547|consen 245 -----------------------------TGMSSMMRKEALDECGGISAF----------------------------G- 266 (431)
T ss_pred -----------------------------ccHHHHHHHHHHHHhccHHHH----------------------------H-
Confidence 155678899999999997542 1
Q ss_pred ccccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001529 751 IYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 802 (1059)
Q Consensus 751 ~ygsVTEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tl~~~l~QR~RWA~ 802 (1059)
+.+.||...+=.+..+||++.+...+.. --.+-.+...+..|-.||..
T Consensus 267 --~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 --GYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred --HHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 3899999999999999999999975443 56677888899999999975
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0054 Score=58.76 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001529 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTF 380 (1059)
Q Consensus 329 lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 380 (1059)
.|.|.|+|||+| |+ .....+|.|++...|+. ..+.|.|||.++-|-
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~ 47 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTT 47 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChH
Confidence 578999999999 66 89999999999999996 559999999998433
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.88 E-value=0.0079 Score=64.30 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=35.9
Q ss_pred cchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 001529 514 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 514 ~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1059)
..+.+.|.++.. ..+++|+.+|+|.+ ..++.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 378999999984 67899999999998 5889999999888654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.64 E-value=0.00079 Score=75.28 Aligned_cols=49 Identities=29% Similarity=0.932 Sum_probs=44.0
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 62 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 62 (1059)
..|..|=+.+..+ ..-|.+| -|||.|||.||.--|.+=|+.||-|+..|
T Consensus 15 d~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 15 DYCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 4699999997766 3459999 99999999999999999999999999999
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.41 E-value=0.016 Score=65.65 Aligned_cols=60 Identities=22% Similarity=0.520 Sum_probs=52.1
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCC
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPR 70 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgspr 70 (1059)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+---+.|...||+|++..++.+=.|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 46899999999999988888888 9999999999988778899999999999987643443
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.40 E-value=0.16 Score=58.54 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001529 333 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 377 (1059)
Q Consensus 333 DvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 377 (1059)
-|+|.||| - |.-+.+|+-|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888997 4 59999999999998755567889999999875
No 78
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.89 E-value=0.019 Score=49.36 Aligned_cols=46 Identities=37% Similarity=0.897 Sum_probs=36.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCC--Ccccc
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQ--CKTRY 62 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~Cpq--Ckt~Y 62 (1059)
.+.+|.+||+.+ .+|++.|.|.+|+=|.=|+||+++- .|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~g-----~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKAG-----GCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhCC-----ceEeccCCCCc
Confidence 467899999997 3478899999999999999998753 4444 66655
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=94.00 E-value=1.1 Score=56.70 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=69.2
Q ss_pred HHhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHhhHhcccccccccccccccCcccccccchHHHHHHHHHCCcEEEEe
Q 001529 696 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYC 775 (1059)
Q Consensus 696 ~~~~fG~s~~f~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsVTEDi~TglrLh~rGWrsvY~ 775 (1059)
.+-+||.-.+|-+--...-||+.+. .+. =.+.||+..|+....||=++.++
T Consensus 380 ~rlHYGHPD~~n~~f~~TRGGvSKA----------sk~-------------------lhLsEDIfaG~n~~lRGG~i~h~ 430 (817)
T PF02364_consen 380 VRLHYGHPDVFNRIFMTTRGGVSKA----------SKG-------------------LHLSEDIFAGMNATLRGGRIKHC 430 (817)
T ss_pred hhccCCCchhhhhhheeccCccchH----------hhc-------------------ccccHHHHHHHHHHhcCCceeeh
Confidence 3456676666666656777887652 111 27999999999999999999998
Q ss_pred CCCCCcccccCCC-CHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhhhhh-hccchhhhH
Q 001529 776 MPPRPAFKGSAPI-NLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYI-NTIVYPLTS 841 (1059)
Q Consensus 776 ~~~~aaf~GlaP~-tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl~Yl-~~~ly~l~s 841 (1059)
.- .+ .|..-+ .+..-+.=-..-+.|+=|..+||.--.+ +.+|.+.+-+.+. .+.-+++..
T Consensus 431 ey-~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL---g~~ld~~R~LSfyy~~~Gf~~n~ 492 (817)
T PF02364_consen 431 EY-IQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYRL---GTRLDFFRFLSFYYAHPGFYINN 492 (817)
T ss_pred hh-hh--cccccccCchhhhhhHhHhcCCccchhhhHHHHHh---hccCCHHHHHHHHhcCccHhHhh
Confidence 43 33 343222 2333333345778999988888742222 5677777655433 333344444
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.08 E-value=0.49 Score=36.86 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=33.3
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 61 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 61 (1059)
.|.||.++. .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998887 22322 335899999999987666678899999975
No 81
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=88.06 E-value=3 Score=44.78 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=37.1
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhhcC
Q 001529 498 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 559 (1059)
Q Consensus 498 ~lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1059)
++.-..|.+.-|. .-|--+.+.+ ..|+|+++.|||-- -.|+++-+.+-..-+
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 5788888884442 1133344553 78999999999985 789999887766554
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.29 E-value=0.53 Score=47.48 Aligned_cols=52 Identities=33% Similarity=0.816 Sum_probs=38.7
Q ss_pred ccccccCCccccCCCCCeeeecCC-CCCCcchhhhHhHhh--cCCCCCCCCcccccccC
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNE-CAFPVCRPCYEYERK--DGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~e-C~fpvCr~Cyeyerk--eG~~~CpqCkt~Ykr~k 66 (1059)
--|.||.|. ..-|-|.-=|| |||.||--||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 358899874 22344665555 599999999976666 45589999999999653
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=81.84 E-value=1.5 Score=37.62 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=34.2
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999864 22 333 378999999999877766 678999998873
No 84
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.92 E-value=1.4 Score=55.07 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=29.6
Q ss_pred cccccCCccccCCCCCeeeecCCCCCC----cchhhhHhHhhcCCCCCCCCccccc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFP----VCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fp----vCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
+|.-||-.+ .+|..| |.+||-+ .|.-|- .+...|..-||+|+++-.
T Consensus 3 ~Cp~Cg~~n---~~~akF--C~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFEN---PNNNRF--CQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcC---CCCCcc--ccccCCCCCCCcCCCCC-CCCCcccccccccCCccc
Confidence 566666553 333333 6666554 366665 557788899999998865
No 85
>PHA02929 N1R/p28-like protein; Provisional
Probab=75.16 E-value=3.3 Score=45.92 Aligned_cols=55 Identities=24% Similarity=0.545 Sum_probs=39.8
Q ss_pred cCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 8 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
.....|.||.+.+..++ ....+..-..|+=.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 45679999999875443 112233444889999999995 44557889999999875
No 86
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=72.58 E-value=20 Score=40.88 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=36.5
Q ss_pred ceEEEEecCCCCCCC---hHHHHHHHHHHHcCCCCC---CCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcC
Q 001529 331 PVDIFVSTVDPLKEP---PLVTANTVLSILAVDYPV---DKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHN 401 (1059)
Q Consensus 331 ~VDvfV~T~dP~kEp---~~v~~nTvls~la~DYP~---~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~ 401 (1059)
...|+||.|| || +.+.-.|+-+ |.-.|-. =...+.|+|||...-|.+.. +-||+|++
T Consensus 68 ~lsVIVpayn---E~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~a----------~k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYN---EEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEVA----------LKFSRKLG 130 (323)
T ss_pred eeEEEEecCC---cccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHHH----------HHHHHHcC
Confidence 6789999999 66 3444444433 3333433 26679999999998555432 23677766
No 87
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=71.49 E-value=2.8 Score=33.91 Aligned_cols=43 Identities=30% Similarity=0.651 Sum_probs=33.3
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCK 59 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCk 59 (1059)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999754 67777774 9999999998654444 57999996
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=71.27 E-value=2 Score=37.40 Aligned_cols=48 Identities=29% Similarity=0.689 Sum_probs=35.0
Q ss_pred cCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 8 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
...|.|-.|+..-.. ..+.+ ||=-||+-|+.-||-.| ||=|++|+...
T Consensus 5 ~~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ccceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 345667777765211 12344 59999999999999887 99999999764
No 89
>PHA02862 5L protein; Provisional
Probab=68.88 E-value=3 Score=42.87 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=32.4
Q ss_pred CccccccCCccccCCCCCeeeecCCC---CCCcchhhhHhH-hhcCCCCCCCCcccccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNEC---AFPVCRPCYEYE-RKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~fpvCr~Cyeye-rkeG~~~CpqCkt~Ykr 64 (1059)
+.+|.||-++- +|..-+| .| -==|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 56899998862 3445777 44 112335565322 44788999999999964
No 90
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=3.3 Score=45.44 Aligned_cols=45 Identities=33% Similarity=0.829 Sum_probs=37.4
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH---hhcCCCCCCCCccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE---RKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CpqCkt~Yk 63 (1059)
--|.||=|.+ =|+.|-| ||---|.||. |- ....+++||=||..-.
T Consensus 48 FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 48 FDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred eeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 4799997775 5678888 9999999998 76 5688999999998653
No 91
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=67.83 E-value=1.4 Score=39.45 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.2
Q ss_pred hhhhHhHhhcCCCCCCCCcccccccC
Q 001529 41 RPCYEYERKDGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 41 r~CyeyerkeG~~~CpqCkt~Ykr~k 66 (1059)
+-|+|++..||.=.||+|+..|--.+
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 56888999999999999999996543
No 92
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=67.79 E-value=4.3 Score=42.35 Aligned_cols=52 Identities=27% Similarity=0.543 Sum_probs=35.5
Q ss_pred cCCccccccCCccccCCCCCeeeecCCCCC---CcchhhhHhH-hhcCCCCCCCCccccccc
Q 001529 8 LNGQTCQICGDNVGLTAMGDIFVACNECAF---PVCRPCYEYE-RKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeye-rkeG~~~CpqCkt~Ykr~ 65 (1059)
..+..|.||-++- ++..-+| .|.= -|=+.|.+-= ...++..|++|+++|+-.
T Consensus 6 ~~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4567999997662 2344688 5632 3456787654 345789999999999754
No 93
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=67.73 E-value=3.4 Score=34.32 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=21.3
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPV 39 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 39 (1059)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 94
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.89 E-value=22 Score=42.07 Aligned_cols=48 Identities=19% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 001529 325 EPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGS 375 (1059)
Q Consensus 325 ~~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~ 375 (1059)
-|.+||++.|+|.-.| |--...++||-|++.-.=|.=--.|.+.||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 3578999999999999 99999999999998754332223466677743
No 95
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=66.63 E-value=4.2 Score=31.70 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=18.9
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPV 39 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpv 39 (1059)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998664 33 37999999875
No 96
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.13 E-value=4.5 Score=46.51 Aligned_cols=52 Identities=31% Similarity=0.867 Sum_probs=43.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
...|.||+++. +.+--.|++| -|+|-+|-+|.- -.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 36899999985 4555679999 999999999993 4468999999999999764
No 97
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=65.37 E-value=19 Score=39.08 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=42.3
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCCcEEEE
Q 001529 499 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCYV 569 (1059)
Q Consensus 499 lvYvsRekRPg~~hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~V 569 (1059)
+-.++++.. .--|-+.|++++. ++++|++.+.=|-.+.+++++.+++-.| .|| ++|.|
T Consensus 31 i~i~~~~~~-----~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 31 IEIDNVRNA-----KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp EEEE-SSS------S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred EEEeccCCC-----cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 444556542 3468899999995 8999999999999999999999999998 898 66554
No 98
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=63.89 E-value=1.5 Score=43.18 Aligned_cols=48 Identities=29% Similarity=0.769 Sum_probs=35.7
Q ss_pred cCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001529 8 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 58 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 58 (1059)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 46679999999988763 35 88999999999999988555555566555
No 99
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=62.54 E-value=6.6 Score=29.17 Aligned_cols=39 Identities=36% Similarity=0.870 Sum_probs=27.6
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 58 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 58 (1059)
|.||.+.. .++.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12222 25888899999976666677889987
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.84 E-value=6.4 Score=44.57 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=44.1
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
+-|.+|--++-++.+ ++.--|+|+.+.|-.|..-=-.-|...||.|.+.-+.-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888755 66666799999999999777778999999999988754
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=5.5 Score=45.33 Aligned_cols=46 Identities=33% Similarity=0.826 Sum_probs=38.1
Q ss_pred cCCCCCeeeecCCCCCCc--------ch--hhhHhHhhcCCCCCCCCcccccccCC
Q 001529 22 LTAMGDIFVACNECAFPV--------CR--PCYEYERKDGTQSCPQCKTRYKRHKG 67 (1059)
Q Consensus 22 ~~~~G~~fvaC~eC~fpv--------Cr--~CyeyerkeG~~~CpqCkt~Ykr~kg 67 (1059)
-..+|+..--|..|+||| |+ .|||-+|.|-.+.||.|..|-.|..-
T Consensus 83 ek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 83 EKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred ccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 345677677899999998 54 69999999999999999999988643
No 102
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=59.08 E-value=9.3 Score=30.20 Aligned_cols=39 Identities=33% Similarity=0.839 Sum_probs=28.1
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 58 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 58 (1059)
|.||-|... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 778877642 254444 89999999999877666 7999987
No 103
>PRK00420 hypothetical protein; Validated
Probab=55.77 E-value=5.4 Score=39.52 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.2
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001529 30 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 30 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 64 (1059)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888873 338999999999998864
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.03 E-value=9.4 Score=30.13 Aligned_cols=40 Identities=28% Similarity=0.688 Sum_probs=30.5
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-cCCCCCCCC
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-DGTQSCPQC 58 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CpqC 58 (1059)
|.||.+...... --.+|+=..|+.|.+--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888753322 3457899999999987766 788899988
No 105
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=54.41 E-value=12 Score=31.17 Aligned_cols=46 Identities=26% Similarity=0.640 Sum_probs=32.6
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 64 (1059)
..|.||.++.-. -.+. .|+=- +|..|.+--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 469999997321 2333 56788 99999976666 77999999998753
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.39 E-value=10 Score=43.38 Aligned_cols=39 Identities=31% Similarity=0.717 Sum_probs=29.2
Q ss_pred CCcCCccccc--cCCccccCCCCCeeeecCC-CCCCcchhhhH
Q 001529 6 KNLNGQTCQI--CGDNVGLTAMGDIFVACNE-CAFPVCRPCYE 45 (1059)
Q Consensus 6 ~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~fpvCr~Cye 45 (1059)
-++.|-.|.- ||...-...| .--|.|.. |+|--||.|.|
T Consensus 311 lq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 311 LQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 3566778876 8887654442 33588977 99999999998
No 107
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=54.02 E-value=8.2 Score=33.05 Aligned_cols=28 Identities=29% Similarity=0.927 Sum_probs=17.9
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhH
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE 45 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye 45 (1059)
.|.|||+++|+... .-+ +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999999643 111 1123 6777774
No 109
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.94 E-value=2.7e+02 Score=32.68 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=15.0
Q ss_pred hhcCCccccccccchhHHh
Q 001529 889 RWSGVGIEDWWRNEQFWVI 907 (1059)
Q Consensus 889 ~w~G~si~~wWrne~~W~I 907 (1059)
+-.|.+|+.||....|+.+
T Consensus 173 ~~NGS~Ik~WW~~HHy~s~ 191 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIST 191 (330)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 4568899999998888743
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.66 E-value=11 Score=33.41 Aligned_cols=33 Identities=33% Similarity=0.757 Sum_probs=23.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchh
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRP 42 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~ 42 (1059)
.+|.|..||.....+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6789999999887755555444 77788765554
No 111
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=51.22 E-value=12 Score=44.94 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=22.4
Q ss_pred CeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccC
Q 001529 27 DIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 27 ~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~k 66 (1059)
+.-++|++|+.-+ ..+...||+|++.-.|++
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3477899999864 234458999999876653
No 112
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=51.10 E-value=15 Score=30.21 Aligned_cols=37 Identities=24% Similarity=0.875 Sum_probs=28.5
Q ss_pred CccccccCCccccCCCCCeeeecCCC-CCCcchhhhHhHhhcC
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEYERKDG 51 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 51 (1059)
...|..|+..+ .|.-| -|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999854 36666 79999 9999999997655444
No 113
>COG4818 Predicted membrane protein [Function unknown]
Probab=50.86 E-value=95 Score=30.24 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCeeeCCCCCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001529 907 IGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSW 986 (1059)
Q Consensus 907 I~~~sa~l~Av~~~llk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~wt~lliP~~~Llilnlvgiv~gi~~~i~~~~~~~ 986 (1059)
|.+..+++++.+.|++-.|.-++.+|..=- .... .+|.+.++++.++..+.-.+ |+- .
T Consensus 5 iegaLCY~lgwitGllFlllEre~~FVrFH-------------AmQS------~ltF~~l~~l~ill~~iP~I--g~l-l 62 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKFVRFH-------------AMQS------FLTFLGLWLLIILLAFIPYI--GWL-L 62 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcceeeh-------------hHHH------HHHHHHHHHHHHHHHHhhhh--HHH-H
Confidence 356678888999999977765555553110 0111 12233333333333222211 100 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 001529 987 GPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPT 1019 (1059)
Q Consensus 987 ~~l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~ 1019 (1059)
..+.+-..+..| +.+.+|+.-|-+.|.|.
T Consensus 63 s~~v~l~a~iLw----lv~mykAyrGe~fKlPv 91 (105)
T COG4818 63 SGLVGLAAFILW----LVCMYKAYRGERFKLPV 91 (105)
T ss_pred HhHHHHHHHHHH----HHHHHHHHcCCeecCce
Confidence 123333444444 47889999888889886
No 114
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=49.20 E-value=6.3 Score=44.97 Aligned_cols=36 Identities=33% Similarity=0.876 Sum_probs=27.4
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhHhHhhcC
Q 001529 12 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEYERKDG 51 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 51 (1059)
-|.+|--++ +.-.|+-|+|| +|-.|-||+.--..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887664 34579999999 9999999995444444
No 115
>PHA02926 zinc finger-like protein; Provisional
Probab=48.91 E-value=18 Score=39.91 Aligned_cols=62 Identities=23% Similarity=0.497 Sum_probs=43.3
Q ss_pred CcCCccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhhc-----CCCCCCCCcccccccCCC
Q 001529 7 NLNGQTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERKD-----GTQSCPQCKTRYKRHKGS 68 (1059)
Q Consensus 7 ~~~~~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~CpqCkt~Ykr~kgs 68 (1059)
.+....|.||=+.|-.. ++..-|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 44567999999998543 222233334468899999999766653 346799999999866444
No 116
>PRK12495 hypothetical protein; Provisional
Probab=48.73 E-value=10 Score=41.62 Aligned_cols=29 Identities=34% Similarity=0.885 Sum_probs=22.7
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001529 29 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 29 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 64 (1059)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345777777775 45999999999999964
No 117
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=46.10 E-value=3.8e+02 Score=37.04 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=50.0
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcc----cccCCCCHHHHHHHHHHhhccchHHHhhhccccccccCCCCCcchhh
Q 001529 754 SVTEDILTGFKMHARGWISIYCMPPRPAF----KGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERL 829 (1059)
Q Consensus 754 sVTEDi~TglrLh~rGWrsvY~~~~~aaf----~GlaP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~~~Ls~~QRl 829 (1059)
.+.||+..|+....||=++.+|. -.++= .|+..... =-..-|.|+=|-.+|+. .|-++.++.+.+-|
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~E-YiQvGKGRDvGlnqI~~-----FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHE-YIQVGKGRDVGLNQISN-----FEAKIANGNGEQTLSRD---YYRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccce-eeecccccccCcchhhh-----hhhhhcCCCcchhhhHH---HHHhcccccHHHHH
Confidence 68999999999999998888774 22211 23333222 22456889888888874 22235567766555
Q ss_pred -hhhhccchhhhHHH
Q 001529 830 -AYINTIVYPLTSIP 843 (1059)
Q Consensus 830 -~Yl~~~ly~l~sl~ 843 (1059)
+|+.+.-+++.++.
T Consensus 1244 Sfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1244 SFYFTTVGFYFNNMF 1258 (1679)
T ss_pred HHHhccccHHHHhHH
Confidence 44444555565544
No 118
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=45.30 E-value=13 Score=44.19 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=19.0
Q ss_pred eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 28 IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 28 ~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 356788888755 1 13345788888876443
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.74 E-value=15 Score=47.97 Aligned_cols=45 Identities=20% Similarity=0.654 Sum_probs=32.4
Q ss_pred cCCccccccCCccccCCCCCeeeecCCCCCC-----cchhhhHhHhhcC-CCCCCCCccccc
Q 001529 8 LNGQTCQICGDNVGLTAMGDIFVACNECAFP-----VCRPCYEYERKDG-TQSCPQCKTRYK 63 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-----vCr~CyeyerkeG-~~~CpqCkt~Yk 63 (1059)
.....|.-||-.. ....|.+|+=. .|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 3456899999883 45689999843 68888 3433 367999998654
No 120
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.74 E-value=10 Score=45.00 Aligned_cols=58 Identities=24% Similarity=0.618 Sum_probs=38.9
Q ss_pred CccccccCCccccCCCCCeeeecCCCC-CCcchhhhHhHhhcCCCCCCCCcccccccCC--CCCccCC
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYERKDGTQSCPQCKTRYKRHKG--SPRVEGD 74 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kg--sprv~gd 74 (1059)
...|-.|..+| +|-.+|-|.||. |-+|-+|+.---.-|.+ ||.-+|+-.+. .|.+.+|
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 34799999886 477899999998 99999999433333322 44566664433 3444333
No 121
>PRK07220 DNA topoisomerase I; Validated
Probab=43.50 E-value=14 Score=47.38 Aligned_cols=48 Identities=19% Similarity=0.582 Sum_probs=32.6
Q ss_pred ccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhh----cCCCCCCCCcc
Q 001529 11 QTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERK----DGTQSCPQCKT 60 (1059)
Q Consensus 11 ~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CpqCkt 60 (1059)
..|..||.++... ..|..|+.|. +||-|+-.+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4799999875442 3466799996 57888755543321 13478999985
No 122
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=43.33 E-value=25 Score=37.98 Aligned_cols=49 Identities=33% Similarity=0.642 Sum_probs=34.4
Q ss_pred cCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh---------------hcCCCCCCCCccccc
Q 001529 8 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER---------------KDGTQSCPQCKTRYK 63 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---------------keG~~~CpqCkt~Yk 63 (1059)
.+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-|+++..
T Consensus 16 ~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 34568999999751 3344 2689999999996321 113468999999884
No 123
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=43.30 E-value=15 Score=30.28 Aligned_cols=27 Identities=33% Similarity=0.808 Sum_probs=15.1
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPV 39 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpv 39 (1059)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5677777666655443 34555555543
No 124
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.34 E-value=34 Score=42.66 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=41.2
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 377 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 377 (1059)
...||++-|+|+-+| |...+..+||-|+...-=|.=--.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999999887655545578899998764
No 125
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.21 E-value=11 Score=29.27 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=13.5
Q ss_pred hHhHhhcCCCCCCCCccccc
Q 001529 44 YEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 44 yeyerkeG~~~CpqCkt~Yk 63 (1059)
|.|+-++....||.|+.+-.
T Consensus 9 y~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 9 YIYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred CEECCCcCCCcCcCCCCcHH
Confidence 34444446789999988644
No 126
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.59 E-value=30 Score=30.40 Aligned_cols=48 Identities=25% Similarity=0.711 Sum_probs=35.1
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 64 (1059)
.-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||.|+-.+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999965443 355666679987 999997554 4799999976643
No 127
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=40.29 E-value=21 Score=36.14 Aligned_cols=49 Identities=35% Similarity=0.806 Sum_probs=36.2
Q ss_pred cCCccccccCCcccc--CCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCcc
Q 001529 8 LNGQTCQICGDNVGL--TAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKT 60 (1059)
Q Consensus 8 ~~~~~C~iCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt 60 (1059)
...+.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 457899999999555 4568 999994 6999996 221 22255689999997
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.93 E-value=13 Score=43.06 Aligned_cols=30 Identities=27% Similarity=0.904 Sum_probs=25.3
Q ss_pred CCCcchhhhHhHhhcCC--CCCCCCccccccc
Q 001529 36 AFPVCRPCYEYERKDGT--QSCPQCKTRYKRH 65 (1059)
Q Consensus 36 ~fpvCr~CyeyerkeG~--~~CpqCkt~Ykr~ 65 (1059)
+|.|||.|+---+-+-+ +-||-|.++|+.-
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977776666 9999999999754
No 129
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.76 E-value=26 Score=29.48 Aligned_cols=31 Identities=32% Similarity=1.027 Sum_probs=25.7
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhHh
Q 001529 12 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEY 46 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cyey 46 (1059)
.|..|+.++. +...+.|.+| .|-+|-+||..
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhC
Confidence 5888987652 4588999999 99999999963
No 130
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=37.67 E-value=26 Score=29.02 Aligned_cols=31 Identities=29% Similarity=0.856 Sum_probs=25.1
Q ss_pred cccccCCccccCCCCCeeeecCCCC-CCcchhhhHhH
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYE 47 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~Cyeye 47 (1059)
.|.+|+..+ .| ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i----~g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI----VG-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC----cC-CEEECCCCCCCcCHHHHHCcC
Confidence 588999854 25 789999997 99999999643
No 131
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=37.18 E-value=1.9e+02 Score=31.42 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCch
Q 001529 958 IPPTTVLIVNLVGIVAGVSWAINSGYQSWG--PLFGKLFFAIWVIAHLYPFLKGLLG-RQNRTPT 1019 (1059)
Q Consensus 958 iP~~~Llilnlvgiv~gi~~~i~~~~~~~~--~l~g~lf~~~Wvi~~l~PflkgL~g-R~~r~P~ 1019 (1059)
+-=..|+++.+++++-|+.-.++...+..| .++...+..+.+.+.+|=|+--+.+ +..|.++
T Consensus 97 ~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 97 WLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred EecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 334567788888889898888865544333 2344556667777777777766655 3356676
No 132
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.19 E-value=8.5 Score=37.86 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=17.7
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 29 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 29 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
-+-|+.|+. +++..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 456777774 345555556699999986543
No 133
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.74 E-value=22 Score=26.78 Aligned_cols=28 Identities=36% Similarity=1.045 Sum_probs=12.0
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhh
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPC 43 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~C 43 (1059)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 357889999999998877
No 134
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=35.69 E-value=8.1e+02 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcccch
Q 001529 836 VYPLTSIPLIAYCTLPAFCLLTNKFII 862 (1059)
Q Consensus 836 ly~l~sl~~liylllP~l~Ll~G~~ii 862 (1059)
..+-++++.+.++.+|.+|...|..-+
T Consensus 45 ~~~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 45 HPIEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred chHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 345567778888889999988776544
No 135
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.66 E-value=12 Score=36.79 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=18.0
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001529 29 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 61 (1059)
Q Consensus 29 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 61 (1059)
-+-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 34576666 556666666679999965
No 136
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=34.79 E-value=26 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=25.1
Q ss_pred cCCccccccCCc---cccCCCCCeeeecCCCCCC
Q 001529 8 LNGQTCQICGDN---VGLTAMGDIFVACNECAFP 38 (1059)
Q Consensus 8 ~~~~~C~iCgd~---vg~~~~G~~fvaC~eC~fp 38 (1059)
..|-+|.-|+.- +...+||...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 467899999854 4456899999999999985
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=34.61 E-value=12 Score=43.85 Aligned_cols=69 Identities=29% Similarity=0.551 Sum_probs=44.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcc-hhhhHhHhhcCCCCCCCCcccc---cc--cCCCCCccCCCCcCccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVC-RPCYEYERKDGTQSCPQCKTRY---KR--HKGSPRVEGDDEEDDID 81 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvC-r~CyeyerkeG~~~CpqCkt~Y---kr--~kgsprv~gd~ee~~~d 81 (1059)
+--|..||+-+|+...----.+|-. -.= |==|||--+.|.+.||-|+.-- +| .-|||-|+.+-++-++-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~vT 439 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCVT 439 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccccccccc
Confidence 3479999999999755444555521 111 1126777899999999998322 32 23678887775555543
No 138
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=34.45 E-value=20 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=20.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPV 39 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 39 (1059)
.-+|..||.+|.++..+ .-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~~~-~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQET-RGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhhcc-CceeCCCCCcEE
Confidence 34799999998544322 347888888865
No 139
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=34.44 E-value=40 Score=27.43 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=31.7
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 60 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 60 (1059)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898888 33333333 2 689999999996555 67789999985
No 140
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.29 E-value=14 Score=31.60 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.1
Q ss_pred CCCCCccc
Q 001529 54 SCPQCKTR 61 (1059)
Q Consensus 54 ~CpqCkt~ 61 (1059)
.||.|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55555543
No 141
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.81 E-value=31 Score=41.22 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=33.3
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
-.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 27 l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 27 LRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 58999988651 2333 368999999999755433 458999999875
No 142
>PRK14973 DNA topoisomerase I; Provisional
Probab=32.98 E-value=31 Score=45.39 Aligned_cols=48 Identities=21% Similarity=0.640 Sum_probs=31.7
Q ss_pred ccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhh-cC-----CCCCCCCccc
Q 001529 11 QTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERK-DG-----TQSCPQCKTR 61 (1059)
Q Consensus 11 ~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk-eG-----~~~CpqCkt~ 61 (1059)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876432 3454 99996 66888855544322 12 3689999973
No 143
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=32.59 E-value=5.1e+02 Score=29.68 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=29.5
Q ss_pred hhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHHh
Q 001529 516 AGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCF 556 (1059)
Q Consensus 516 AGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf 556 (1059)
|-|=|.||- +++-....+|+-+|+|-+-..|+.|.+.+..
T Consensus 128 AraRN~LL~-~aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 128 ARARNFLLS-SALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred HHHHHHHHH-hhcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 344467665 4544588999999999998788877777654
No 144
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=6.8 Score=45.44 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=37.3
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 62 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 62 (1059)
+|.||-+=+-.+- -=.||+-..|+.|.--.-++||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 7888887665542 23489999999999999999999999999865
No 145
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.26 E-value=18 Score=35.95 Aligned_cols=28 Identities=14% Similarity=0.573 Sum_probs=16.2
Q ss_pred eecCCCCCCcchhhhHhHhhcCC-CCCCCCcccccc
Q 001529 30 VACNECAFPVCRPCYEYERKDGT-QSCPQCKTRYKR 64 (1059)
Q Consensus 30 vaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt~Ykr 64 (1059)
.-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 334444322 359999987544
No 146
>PRK11827 hypothetical protein; Provisional
Probab=31.87 E-value=32 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred CcchhhhHhHhhcCCCCCCCCcccccccCCCCCc
Q 001529 38 PVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRV 71 (1059)
Q Consensus 38 pvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv 71 (1059)
|+|+-=.+|...+..-+|..|+-.|--..|=|-.
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVl 45 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVL 45 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcccc
Confidence 5555444554444446788888889766565543
No 147
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.83 E-value=35 Score=28.19 Aligned_cols=45 Identities=24% Similarity=0.684 Sum_probs=32.3
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-----cCCCCCCCCcc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-----DGTQSCPQCKT 60 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-----eG~~~CpqCkt 60 (1059)
+|++||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 566778999999987766777765432 34567777653
No 148
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.70 E-value=43 Score=38.66 Aligned_cols=42 Identities=24% Similarity=0.571 Sum_probs=28.0
Q ss_pred CccccccCCcc--c--c---CCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001529 10 GQTCQICGDNV--G--L---TAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 60 (1059)
Q Consensus 10 ~~~C~iCgd~v--g--~---~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 60 (1059)
.+.|.+||..= + . +++|.-+.-|.-|+. |..-.+-.||.|+.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCC
Confidence 45999999881 1 1 268999999987764 33333455666665
No 149
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=31.34 E-value=42 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.555 Sum_probs=26.9
Q ss_pred cccccCCccccCCCCCeeeecCCCC-CCcchhhhHhHhhcCC
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYERKDGT 52 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~ 52 (1059)
.|.+||-|+. .+..-|-.++ +-+|.+||+-.|--++
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~~ 38 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPSN 38 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCCC
Confidence 6999999983 2666777776 9999999965554433
No 150
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=30.96 E-value=25 Score=43.85 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=24.4
Q ss_pred CcCCccccccCCccccCCCCCe-----------eee-----cCCCCCCcchhhhHh
Q 001529 7 NLNGQTCQICGDNVGLTAMGDI-----------FVA-----CNECAFPVCRPCYEY 46 (1059)
Q Consensus 7 ~~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~fpvCr~Cyey 46 (1059)
....++|.|||.+-.++.+-.. |++ =.-=.||||..|+..
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~ 250 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALK 250 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHH
Confidence 3455689999999444433222 222 012368999999954
No 151
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.86 E-value=15 Score=32.44 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=9.5
Q ss_pred CCCCCCCccccccc
Q 001529 52 TQSCPQCKTRYKRH 65 (1059)
Q Consensus 52 ~~~CpqCkt~Ykr~ 65 (1059)
.-+||+||+-|...
T Consensus 44 ~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 44 FPVCPECKEIYESL 57 (58)
T ss_pred CCCCcCHHHHHHhc
Confidence 46777777777543
No 152
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=30.68 E-value=29 Score=30.65 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=14.7
Q ss_pred hhcCCCCCCCCccccc------ccCCCCCccCCCCcCccc
Q 001529 48 RKDGTQSCPQCKTRYK------RHKGSPRVEGDDEEDDID 81 (1059)
Q Consensus 48 rkeG~~~CpqCkt~Yk------r~kgsprv~gd~ee~~~d 81 (1059)
..+.|..-|=|-+|=| -..|+=||+|.+++++.+
T Consensus 14 ~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 14 WSPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp -SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred ccCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 3456666666666655 456777888876544433
No 153
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.43 E-value=34 Score=37.44 Aligned_cols=39 Identities=26% Similarity=0.615 Sum_probs=26.0
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 61 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 61 (1059)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 457999998874321 23788887654333 3589999865
No 154
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=30.24 E-value=1.2e+02 Score=36.07 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHH
Q 001529 512 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC 555 (1059)
Q Consensus 512 hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1059)
.+.|+-.|=-.+-... ..+.+||-.+|||.|+| -++.|-+-
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHH
Confidence 3458888875443322 45889999999999985 56777554
No 155
>PRK07219 DNA topoisomerase I; Validated
Probab=30.04 E-value=31 Score=44.86 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=31.7
Q ss_pred CccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHh----hcCCCCCCCCccccccc
Q 001529 10 GQTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYER----KDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyer----keG~~~CpqCkt~Ykr~ 65 (1059)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 35688888764432 3455 88885 6777753332211 12347899998866543
No 156
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=29.81 E-value=26 Score=36.39 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=40.5
Q ss_pred ccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 19 NVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 19 ~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 378888899899999999999999998888888899999999995
No 157
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.69 E-value=23 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=18.1
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001529 30 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 30 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 64 (1059)
.-|+.|+ ++++..+-...||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4566666 445555556779999976533
No 158
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=28.97 E-value=3e+02 Score=25.22 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=19.2
Q ss_pred chhhhHHHHHhhccccCceEEEEecCCCCC
Q 001529 515 KAGAMNALIRVSAVLTNGAYLLNVDCDHYF 544 (1059)
Q Consensus 515 KAGaLNallrvSav~tngp~Il~lDcD~~~ 544 (1059)
+...+|++.+. ..++++++.+|+|=++
T Consensus 58 ~~~~~~~~~~~---~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 58 QRAWRNALIER---AFDADWVLFLDADEFL 84 (97)
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeeeEEE
Confidence 34456666553 3588999999999765
No 159
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.92 E-value=22 Score=35.20 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=16.2
Q ss_pred eecCCCCCCcchhhhHhHhhcCC-CCCCCCccccc
Q 001529 30 VACNECAFPVCRPCYEYERKDGT-QSCPQCKTRYK 63 (1059)
Q Consensus 30 vaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt~Yk 63 (1059)
.-|+.|+ ++++..+-. -.||+|+.+-.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4466666 244444443 56999997643
No 160
>PF15050 SCIMP: SCIMP protein
Probab=28.60 E-value=58 Score=32.80 Aligned_cols=40 Identities=20% Similarity=0.554 Sum_probs=25.3
Q ss_pred cccccchhHHhhhHHHHHHHHH-----HHHHHHhcCCCCCeeeCCC
Q 001529 897 DWWRNEQFWVIGGTSAHLFAVF-----QGLLKVLAGIDTNFTVTSK 937 (1059)
Q Consensus 897 ~wWrne~~W~I~~~sa~l~Av~-----~~llk~L~g~~~~F~VT~K 937 (1059)
+|||+ .||.|-++..-+..+. --+.+.+.....+|.++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 59995 7998877654443332 2334455567778888763
No 161
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.28 E-value=29 Score=42.47 Aligned_cols=49 Identities=24% Similarity=0.593 Sum_probs=28.4
Q ss_pred CCCCC-eeeecCCCCCC-cchhhh---HhHhhcCCCCCCCCcccccccCCCCCc
Q 001529 23 TAMGD-IFVACNECAFP-VCRPCY---EYERKDGTQSCPQCKTRYKRHKGSPRV 71 (1059)
Q Consensus 23 ~~~G~-~fvaC~eC~fp-vCr~Cy---eyerkeG~~~CpqCkt~Ykr~kgsprv 71 (1059)
+-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 34454 46677777664 355553 334455556677777666655555543
No 162
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=27.72 E-value=45 Score=35.30 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=22.1
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCC
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQ 53 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~ 53 (1059)
|.|||..|-.. - -|.-.-=-.-||+.||.|.++...+
T Consensus 6 CEiCG~~i~~~---~-~v~vegsel~VC~~Cak~G~~~~~~ 42 (165)
T COG1813 6 CELCGREIDKP---I-KVKVEGAELTVCDDCAKFGTAAKTA 42 (165)
T ss_pred eeccccccCCC---e-eEEeecceeehhHHHHHhccCcccc
Confidence 99999986421 0 1222122356889999888554433
No 163
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.10 E-value=20 Score=26.43 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=10.5
Q ss_pred HhhcCCCCCCCCccc
Q 001529 47 ERKDGTQSCPQCKTR 61 (1059)
Q Consensus 47 erkeG~~~CpqCkt~ 61 (1059)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346677888888765
No 164
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.04 E-value=73 Score=28.39 Aligned_cols=50 Identities=22% Similarity=0.548 Sum_probs=35.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC-CCCCCCcc
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT-QSCPQCKT 60 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt 60 (1059)
...+|.-||-.|--.+.+ +-.+|.+|+=-+-+=|. .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998655555 45579999877444465 5577766 57999973
No 165
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.53 E-value=26 Score=31.29 Aligned_cols=17 Identities=41% Similarity=0.993 Sum_probs=14.9
Q ss_pred hhcCCCCCCCCcccccc
Q 001529 48 RKDGTQSCPQCKTRYKR 64 (1059)
Q Consensus 48 rkeG~~~CpqCkt~Ykr 64 (1059)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 57899999999999973
No 166
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=26.53 E-value=72 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=26.5
Q ss_pred cCceEEEEecCCCCCCcHHHHHHHHHhhcCCCCCCcEEEE
Q 001529 530 TNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 569 (1059)
Q Consensus 530 tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1059)
+..+|++++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 56799999999998 6777666655554322233466766
No 167
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.22 E-value=21 Score=25.75 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=6.7
Q ss_pred hcCCCCCCCCccc
Q 001529 49 KDGTQSCPQCKTR 61 (1059)
Q Consensus 49 keG~~~CpqCkt~ 61 (1059)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 4444555555543
No 168
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=26.12 E-value=28 Score=26.90 Aligned_cols=25 Identities=32% Similarity=0.958 Sum_probs=11.5
Q ss_pred ccccccCCccccCCCCCeeeecCCCCC
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAF 37 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~f 37 (1059)
..|..|+.+-.. +||..|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357788877655 6777665 778875
No 169
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.40 E-value=25 Score=33.97 Aligned_cols=52 Identities=35% Similarity=0.606 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccccccCCC-------CCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccC
Q 001529 434 KREYEEFKVRINALVAKAQKMPEEGWTMQDG-------TPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREK 506 (1059)
Q Consensus 434 kreYeefk~rI~~L~~~~~~~p~~~w~m~dg-------~~w~g~~~~dHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRek 506 (1059)
|-||+|+|+. . -++|+|+|= +.|.-.+--.||.+.+.|--..|| .||.--+|
T Consensus 20 k~eyqel~~~-------~----~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG----------~VyYP~~k 78 (107)
T COG4707 20 KVEYQELKEK-------D----FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG----------WVYYPEKK 78 (107)
T ss_pred HHHHHHHHHh-------h----hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc----------EEEccccC
Confidence 5699998752 1 258999885 345444456888888887666663 67765444
No 170
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.27 E-value=47 Score=43.47 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=31.7
Q ss_pred CCccccccCCc--ccc-CCCCCeeeecCCCCCCcchhhhHhHh-----------hcCCCCCCCCcccccccC
Q 001529 9 NGQTCQICGDN--VGL-TAMGDIFVACNECAFPVCRPCYEYER-----------KDGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 9 ~~~~C~iCgd~--vg~-~~~G~~fvaC~eC~fpvCr~Cyeyer-----------keG~~~CpqCkt~Ykr~k 66 (1059)
....|..||.. +.. .-.| .|++|. +||-|+-=....+ ......||.|+......+
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~ 659 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRH 659 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEec
Confidence 44689999764 222 2345 599994 5777742111111 112468999987665443
No 171
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=25.11 E-value=37 Score=35.12 Aligned_cols=43 Identities=35% Similarity=0.838 Sum_probs=25.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCcc
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKT 60 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt 60 (1059)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557999984 46999988841 222212111 1234578999986
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.77 E-value=49 Score=42.09 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.3
Q ss_pred CCCCCCCcccc
Q 001529 52 TQSCPQCKTRY 62 (1059)
Q Consensus 52 ~~~CpqCkt~Y 62 (1059)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 46777777654
No 173
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=24.40 E-value=1.7e+02 Score=34.59 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=28.7
Q ss_pred CCcchhhhHHHHHhhccccCceEEEEecCCCCCCcHHHHHHHHH
Q 001529 512 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC 555 (1059)
Q Consensus 512 hh~KAGaLNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1059)
.+.|+-.|=-.+-... ..+.+||-.+|||.|+| -++.|-+-
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYvk 181 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYVK 181 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHHH
Confidence 3558888875443322 45889999999999975 46776543
No 174
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=24.11 E-value=50 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=23.9
Q ss_pred CeeeecCCCCCCcchhhhHhHhh-cCCCCCCCCcccccccC
Q 001529 27 DIFVACNECAFPVCRPCYEYERK-DGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 27 ~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CpqCkt~Ykr~k 66 (1059)
+..++|+||+.-+=+| ..+ .....||+|++.-.|++
T Consensus 11 ~~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 11 AKHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CCeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 3468899998764333 112 33457999999987663
No 175
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.99 E-value=42 Score=45.01 Aligned_cols=48 Identities=23% Similarity=0.632 Sum_probs=30.7
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCc-----chhhhHhHh--hcCCCCCCCCccccccc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPV-----CRPCYEYER--KDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpv-----Cr~Cyeyer--keG~~~CpqCkt~Ykr~ 65 (1059)
..|.-||..+-. .-|.+|+-+. |..|=-.-- ..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 468888886421 2688888664 777753211 12355799999876644
No 176
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.98 E-value=65 Score=23.83 Aligned_cols=24 Identities=29% Similarity=0.826 Sum_probs=13.9
Q ss_pred ccccCCccccCCCCCeeeecCCCCC
Q 001529 13 CQICGDNVGLTAMGDIFVACNECAF 37 (1059)
Q Consensus 13 C~iCgd~vg~~~~G~~fvaC~eC~f 37 (1059)
|..||-.|--.+.|..| .|.+|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55676665444445444 4777775
No 177
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.78 E-value=54 Score=28.60 Aligned_cols=13 Identities=31% Similarity=0.762 Sum_probs=10.0
Q ss_pred ccccccCCccccC
Q 001529 11 QTCQICGDNVGLT 23 (1059)
Q Consensus 11 ~~C~iCgd~vg~~ 23 (1059)
..|..||..|-++
T Consensus 3 ~~CP~CG~~iev~ 15 (54)
T TIGR01206 3 FECPDCGAEIELE 15 (54)
T ss_pred cCCCCCCCEEecC
Confidence 3688899888775
No 178
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.70 E-value=41 Score=28.36 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=30.5
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD 50 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke 50 (1059)
.+.|.+|+...+...+. .-|.-|+--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeeec
Confidence 46899999998875433 569999999999999887663
No 179
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=23.68 E-value=36 Score=30.21 Aligned_cols=27 Identities=33% Similarity=0.888 Sum_probs=19.5
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCc
Q 001529 11 QTCQICGDNVGLTAMGDIFVACNECAFPV 39 (1059)
Q Consensus 11 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 39 (1059)
-+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 21 YiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEecccccccccc-CCC-cEehhhcchHH
Confidence 4788888875443 355 46899999976
No 180
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=23.54 E-value=59 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=23.9
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE 47 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye 47 (1059)
+...|..|++.. .-.-|.+|.-++|..|....
T Consensus 2 ~~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 2 QEPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred cCccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 345788887552 46779999999999999654
No 181
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.49 E-value=49 Score=39.19 Aligned_cols=47 Identities=30% Similarity=0.669 Sum_probs=33.5
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh-hcCCCCCCCCccccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER-KDGTQSCPQCKTRYK 63 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer-keG~~~CpqCkt~Yk 63 (1059)
-+.|.||.++= - -|-=.-||--.|-+|.--=. .++.|-||=|+-.-|
T Consensus 369 FeLCKICaend-----K--dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAEND-----K--DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccC-----C--CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 36799998761 1 13344689999999986544 465799999987654
No 182
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=23.34 E-value=3.4e+02 Score=32.10 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=21.5
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001529 978 AINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQ 1014 (1059)
Q Consensus 978 ~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~gR~ 1014 (1059)
.++.....|. .+...|+...+.+.++++..-++.+.
T Consensus 286 ~l~~~~~~~~-~i~~~~~~~a~~~v~~~~~~~~l~~~ 321 (344)
T PF04123_consen 286 YLRRDFRLWR-YINAPFFVIAIGLVLYGFSAYFLSIS 321 (344)
T ss_pred HHccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344433354 44556777777777777777666654
No 183
>PF12773 DZR: Double zinc ribbon
Probab=23.29 E-value=56 Score=27.07 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=6.1
Q ss_pred CccccccCCccc
Q 001529 10 GQTCQICGDNVG 21 (1059)
Q Consensus 10 ~~~C~iCgd~vg 21 (1059)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 445555555544
No 184
>PTZ00293 thymidine kinase; Provisional
Probab=23.28 E-value=39 Score=37.07 Aligned_cols=35 Identities=20% Similarity=0.699 Sum_probs=22.2
Q ss_pred ccccccCCccccC----CCCCe-eeecCCCCCCcchhhhH
Q 001529 11 QTCQICGDNVGLT----AMGDI-FVACNECAFPVCRPCYE 45 (1059)
Q Consensus 11 ~~C~iCgd~vg~~----~~G~~-fvaC~eC~fpvCr~Cye 45 (1059)
.+|..||.+.-.| ++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 33443 22223434789999995
No 185
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=23.19 E-value=39 Score=40.55 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=23.2
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccC
Q 001529 30 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHK 66 (1059)
Q Consensus 30 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~k 66 (1059)
++|++|+--+..|=- +..+...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCCC
Confidence 889999987654421 1223467999999987663
No 186
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=23.16 E-value=33 Score=30.59 Aligned_cols=42 Identities=33% Similarity=0.777 Sum_probs=33.2
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCC
Q 001529 29 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDD 75 (1059)
Q Consensus 29 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ 75 (1059)
.+|| |+||-=..|-+..+.-.||+||.-|.-..|-|..--||
T Consensus 8 iLaC-----P~~kg~L~~~~~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 8 ILAC-----PVCKGPLVYDEEKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred eeec-----cCcCCcceEeccCCEEEecccCceeecccCccccCchh
Confidence 6788 44544477877778899999999999988888876655
No 187
>PRK12438 hypothetical protein; Provisional
Probab=23.09 E-value=1.1e+03 Score=31.77 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001529 989 LFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLW 1036 (1059)
Q Consensus 989 l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~ 1036 (1059)
+-.+.++++-.+++..-|+.+++.|+-|.|.+.+..-++.++++..+|
T Consensus 257 LPa~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 257 LPAKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555666667777888999877766555555554444
No 188
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=22.74 E-value=5.2e+02 Score=28.79 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=44.2
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCC
Q 001529 334 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNI 402 (1059)
Q Consensus 334 vfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea~~FA~~WvPFCkk~~I 402 (1059)
|+|+|-+ ..|-|+-.|+..+.+-.++.+.+.+.=-.||...+...-| .-+++ -||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll--~g~~~----~l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL--DGGLQ----RLCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH--HHHHH----HHHHhhcC
Confidence 7899998 7778999999999999998888877777887776544433 00122 37887764
No 189
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.49 E-value=44 Score=35.71 Aligned_cols=44 Identities=30% Similarity=0.700 Sum_probs=35.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001529 9 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 60 (1059)
Q Consensus 9 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 60 (1059)
..-.|.||-+..-.. ....|+--.||.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345899998886333 5667899999999988887 8899999993
No 190
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.19 E-value=38 Score=27.00 Aligned_cols=11 Identities=45% Similarity=1.431 Sum_probs=9.6
Q ss_pred CCCCCcccccc
Q 001529 54 SCPQCKTRYKR 64 (1059)
Q Consensus 54 ~CpqCkt~Ykr 64 (1059)
.||+|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999974
No 191
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.15 E-value=32 Score=34.98 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=8.9
Q ss_pred cCCCCCCCCccc
Q 001529 50 DGTQSCPQCKTR 61 (1059)
Q Consensus 50 eG~~~CpqCkt~ 61 (1059)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344669999976
No 192
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=22.06 E-value=31 Score=41.56 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=9.4
Q ss_pred CCccccccCCc
Q 001529 9 NGQTCQICGDN 19 (1059)
Q Consensus 9 ~~~~C~iCgd~ 19 (1059)
+.+.|.+|||+
T Consensus 268 ~e~~CAVCgDn 278 (605)
T KOG4217|consen 268 AEGLCAVCGDN 278 (605)
T ss_pred ccceeeecCCh
Confidence 45799999998
No 193
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=21.97 E-value=7.7e+02 Score=31.82 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC
Q 001529 989 LFGKLFFAIWVIAHLYPFLKGLLGR 1013 (1059)
Q Consensus 989 l~g~lf~~~Wvi~~l~PflkgL~gR 1013 (1059)
.+..-|+++-+++-|.|+++.+||-
T Consensus 439 ~flsGl~s~il~iGllP~fE~~F~~ 463 (700)
T COG1480 439 AFLSGLLSGILVLGLLPYFEALFGL 463 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566666778899999998864
No 194
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=21.90 E-value=59 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=24.7
Q ss_pred cCCccccccCC--cccc-CCCCCeeeecCCCCCC
Q 001529 8 LNGQTCQICGD--NVGL-TAMGDIFVACNECAFP 38 (1059)
Q Consensus 8 ~~~~~C~iCgd--~vg~-~~~G~~fvaC~eC~fp 38 (1059)
..|-+|.-|+. .|.+ .+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 46789999984 4544 6889999999999984
No 195
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=21.86 E-value=1.1e+02 Score=25.89 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=28.5
Q ss_pred cccccCCccccCCCCCeeeecCCCCC---CcchhhhHhHhh-cCCCCCCCCc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAF---PVCRPCYEYERK-DGTQSCPQCK 59 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeyerk-eG~~~CpqCk 59 (1059)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 334444557788 4542 244567765543 4467899996
No 196
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=21.64 E-value=61 Score=36.70 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=26.5
Q ss_pred HhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHH
Q 001529 313 LDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTV 353 (1059)
Q Consensus 313 ~drL~~r~e~~~~~~~lp~VDvfV~T~dP~kEp~~v~~nTv 353 (1059)
+|.+++-.+.=.....+|.|=|||+ +||+..++.++++-+
T Consensus 159 LeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 159 LEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 4555554432223456788878886 699999998888744
No 197
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=21.54 E-value=72 Score=26.35 Aligned_cols=29 Identities=24% Similarity=0.825 Sum_probs=23.1
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhH
Q 001529 12 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYE 45 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 45 (1059)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588898743 35 46789999 8999999995
No 198
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=89 Score=27.97 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=33.9
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC-CCCCCCc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT-QSCPQCK 59 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCk 59 (1059)
..+|.-||-.|-..+++-.| +|..|+=-+-.-|- --||-|| -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 46899999998887777665 69999943333333 2357666 5799886
No 199
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.40 E-value=56 Score=26.13 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=18.7
Q ss_pred CCcc--ccccCCccccCCCCCeeeecCCCCC
Q 001529 9 NGQT--CQICGDNVGLTAMGDIFVACNECAF 37 (1059)
Q Consensus 9 ~~~~--C~iCgd~vg~~~~G~~fvaC~eC~f 37 (1059)
.+.. |.+||.......||- .-|.+|+-
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 4445 888888877777775 44777763
No 200
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.40 E-value=60 Score=36.43 Aligned_cols=59 Identities=22% Similarity=0.429 Sum_probs=44.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCC-CCc--chhhhHhHhh-cCCCCCCCCcccccccCCCC
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECA-FPV--CRPCYEYERK-DGTQSCPQCKTRYKRHKGSP 69 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-fpv--Cr~Cyeyerk-eG~~~CpqCkt~Ykr~kgsp 69 (1059)
+..|.||-++........+-++| .|. .+. =|.|.+-..+ -|+-.|..|+..|......+
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~ 140 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKL 140 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceecceee
Confidence 35899999987655444778999 672 222 5899988876 57799999999999875443
No 201
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=21.31 E-value=60 Score=40.47 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=24.0
Q ss_pred CccccccCCccccCCCCC----------eeee--cCCCCCCcchhhhHhHhhcC
Q 001529 10 GQTCQICGDNVGLTAMGD----------IFVA--CNECAFPVCRPCYEYERKDG 51 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~----------~fva--C~eC~fpvCr~CyeyerkeG 51 (1059)
+.+|.|||.+--++.+-. -|++ =.-=.||||+.|+.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 579999999733222211 1222 112268999999954 3455
No 202
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=1.4e+03 Score=29.94 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001529 989 LFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLW 1036 (1059)
Q Consensus 989 l~g~lf~~~Wvi~~l~PflkgL~gR~~r~P~~v~~~s~~la~~f~~l~ 1036 (1059)
+-.+++.+.-.+++..-+..+++.|.-|+|.+.++..+|.+++.-.+|
T Consensus 234 lP~~~iL~aial~~aia~f~ai~~r~~Rip~~~~vll~l~~ii~g~~~ 281 (885)
T COG1615 234 LPAKLILIAIALLCAIAFFSAIFLRDLRIPAIGLVLLLLSSIIVGSLW 281 (885)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhH
Confidence 456777777777777788888887888899988777666665555555
No 203
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.17 E-value=41 Score=26.75 Aligned_cols=11 Identities=36% Similarity=1.337 Sum_probs=9.4
Q ss_pred CCCCCcccccc
Q 001529 54 SCPQCKTRYKR 64 (1059)
Q Consensus 54 ~CpqCkt~Ykr 64 (1059)
.||+|+++|+-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999953
No 204
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=20.90 E-value=46 Score=33.65 Aligned_cols=51 Identities=29% Similarity=0.634 Sum_probs=32.4
Q ss_pred CCccccccCCc--cccCCCC-CeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001529 9 NGQTCQICGDN--VGLTAMG-DIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 9 ~~~~C~iCgd~--vg~~~~G-~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
.+-.|.-||.. |....++ -.|..| +.||.||-=.-. +...+.||+|.-+..
T Consensus 59 ~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~~--~~~~~~cp~c~~~~~ 112 (140)
T COG0551 59 TGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEKP--KPKEKKCPKCGSRKL 112 (140)
T ss_pred CceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeecC--CcccccCCcCCCcee
Confidence 34678889943 3333333 379999 789999854322 333345999997443
No 205
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=20.84 E-value=46 Score=30.10 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=16.6
Q ss_pred eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001529 28 IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 61 (1059)
Q Consensus 28 ~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 61 (1059)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 367787777766 23 499999974
No 206
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.50 E-value=83 Score=35.27 Aligned_cols=50 Identities=20% Similarity=0.475 Sum_probs=38.0
Q ss_pred CccccccCCccccCCCCC-eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001529 10 GQTCQICGDNVGLTAMGD-IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~-~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
.-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|.+.
T Consensus 113 ~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 113 RFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred eeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 34899998776 454 58888889988888888544 4 456799999999743
No 207
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=78 Score=33.99 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=37.6
Q ss_pred CcCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001529 7 NLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 61 (1059)
Q Consensus 7 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 61 (1059)
...--.|.||=|.+--. +-|+= +||---|+.|-+..+|.+ ..||-|+.+
T Consensus 128 ~~~~~~CPiCl~~~sek----~~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kk 176 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK----VPVST-KCGHVFCSQCIKDALKNT-NKCPTCRKK 176 (187)
T ss_pred cccccCCCceecchhhc----ccccc-ccchhHHHHHHHHHHHhC-CCCCCcccc
Confidence 33446799998876432 22544 899999999999999999 789999873
No 208
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=20.33 E-value=34 Score=44.09 Aligned_cols=42 Identities=29% Similarity=0.803 Sum_probs=0.0
Q ss_pred cccccCCccccCCCCCeeeecCCCCCC-----cchhhhHhHhhcCCCCCCCCccccc
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFP-----VCRPCYEYERKDGTQSCPQCKTRYK 63 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fp-----vCr~CyeyerkeG~~~CpqCkt~Yk 63 (1059)
.|.-||..- .+.-|.+|+-+ +|+.|-.... + ..||.|++.-.
T Consensus 657 ~Cp~Cg~~t-------~~~~Cp~CG~~T~~~~~Cp~C~~~~~-~--~~C~~C~~~~~ 703 (900)
T PF03833_consen 657 RCPKCGKET-------FYNRCPECGSHTEPVYVCPDCGIEVE-E--DECPKCGRETT 703 (900)
T ss_dssp ---------------------------------------------------------
T ss_pred cCcccCCcc-------hhhcCcccCCccccceeccccccccC-c--cccccccccCc
Confidence 577777652 35567777766 6777763222 2 27888776644
No 209
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.21 E-value=71 Score=24.23 Aligned_cols=28 Identities=32% Similarity=0.878 Sum_probs=21.2
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhh
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFPVCRPC 43 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~C 43 (1059)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998775 3443889999999887655
No 210
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=20.08 E-value=55 Score=33.84 Aligned_cols=44 Identities=34% Similarity=0.820 Sum_probs=30.8
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcch-hhhHhHhhcCCCCCCCCccccccc
Q 001529 10 GQTCQICGDNVGLTAMGDIFVACNECAFPVCR-PCYEYERKDGTQSCPQCKTRYKRH 65 (1059)
Q Consensus 10 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr-~CyeyerkeG~~~CpqCkt~Ykr~ 65 (1059)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~ 49 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNN 49 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCcc
Confidence 467888877532 3569999999995 788443 3368888876544
No 211
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.05 E-value=50 Score=42.03 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=0.0
Q ss_pred cccccCCccccCCCCCeeeecCCCCCC----------cchhhhHhHhhcCCCCCCCCcccccccCC
Q 001529 12 TCQICGDNVGLTAMGDIFVACNECAFP----------VCRPCYEYERKDGTQSCPQCKTRYKRHKG 67 (1059)
Q Consensus 12 ~C~iCgd~vg~~~~G~~fvaC~eC~fp----------vCr~CyeyerkeG~~~CpqCkt~Ykr~kg 67 (1059)
.|.-||.. +-|..|.-+ .|+-|- |...-. ..||+|+...-+..|
T Consensus 383 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 383 LCRDCGWV----------AECPHCDASLTLHRFQRRLRCHHCG-YQEPIP-KACPECGSTDLVPVG 436 (679)
T ss_pred EhhhCcCc----------cCCCCCCCceeEECCCCeEECCCCc-CCCCCC-CCCCCCcCCeeEEee
Done!