Query 001529
Match_columns 1059
No_of_seqs 380 out of 1906
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 16:51:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_pdb/001529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 454.7 50.0 492 252-1011 66-571 (802)
2 1weo_A Cellulose synthase, cat 1.0 1 1 312.8 7.7 85 1-85 7-91 (93)
3 2z86_A Chondroitin synthase; G 1.0 1 1 136.7 18.1 129 326-579 89-218 (625)
4 2d7i_A Polypeptide N-acetylgal 1.0 1 1 125.6 15.8 262 326-816 108-379 (570)
5 1xhb_A Polypeptide N-acetylgal 1.0 1 1 122.9 18.1 121 326-569 25-148 (472)
6 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 121.4 13.8 113 326-560 62-174 (501)
7 2z86_A Chondroitin synthase; G 1.0 1 1 119.0 12.4 227 326-809 371-599 (625)
8 1qg8_A Protein (spore coat pol 1.0 1 1 113.7 6.9 124 330-576 1-129 (255)
9 3l7i_A Teichoic acid biosynthe 1.0 1 1 106.6 0.0 118 329-571 1-118 (729)
10 3bcv_A Putative glycosyltransf 1.0 1 1 106.2 13.8 110 328-560 3-112 (240)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=454.73 Aligned_cols=492 Identities=22% Similarity=0.328 Sum_probs=376.2
Q ss_pred HHHHHHHHHHHHHHHHHEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 489999999999986420010467776-----146899999999999999984216545135510376985300799999
Q 001529 252 YRVVIILRLIILGFFLQYRVTHPVKDA-----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEP 326 (1059)
Q Consensus 252 ~R~~~~~~l~~l~~yl~wRi~~~~~~a-----~~~Wl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~ 326 (1059)
-.+++++.+++.+.|++||++.+++.. .++|+.++++|+++.+.|++..+..|.|..|...++ ..+
T Consensus 66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~~ 136 (802)
T 4hg6_A 66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQP 136 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCC
T ss_conf 78999999999999999986600677530589999999999999999999999999836567888898---------985
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99986279992389999995999999999873979999828999259995231899888899843323344421788899
Q 001529 327 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 406 (1059)
Q Consensus 327 ~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR~ 406 (1059)
+++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|.|||.++-|.+.
T Consensus 137 ~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------ 189 (802)
T 4hg6_A 137 EELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------ 189 (802)
T ss_dssp TTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------
T ss_pred CCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC------------------------
T ss_conf 67984899999799---989999999999984669998289999989987642234------------------------
Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 01221001232236688157999999999999999999999997304984455557999999999999930134220478
Q 001529 407 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 486 (1059)
Q Consensus 407 Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~~ 486 (1059)
..|+.+++..+. +++ ++.+.++
T Consensus 190 ---------------~d~~i~~~~~~~---~~~----l~~~~~~------------------------------------ 211 (802)
T 4hg6_A 190 ---------------PDPELAQKAQER---RRE----LQQLCRE------------------------------------ 211 (802)
T ss_dssp ---------------SSHHHHHHHHHH---HHH----HHHHHHH------------------------------------
T ss_pred ---------------CCHHHHHHHHHH---HHH----HHHHHHH------------------------------------
T ss_conf ---------------887899998866---699----9999985------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCC
Q ss_conf 99889999878289994667999887762103489998601256951999952999889479999999733-19889973
Q 001529 487 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKK 565 (1059)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff-~Dp~~g~~ 565 (1059)
.++.|+.|++ +++.||||+|.+++. ++++||+.+|||++ ..|++|++.+.+| .|| +
T Consensus 212 ----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----~ 268 (802)
T 4hg6_A 212 ----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP----D 268 (802)
T ss_dssp ----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----S
T ss_pred ----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----C
T ss_conf ----------6947999268----877636899999996----59999999999988-18589999999984099----8
Q ss_pred EEEEECCCCCCCCCCC-------CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 7999047201489965-------411000235464330223367996322466210243311889877546888862234
Q 001529 566 TCYVQFPQRFDGIDLH-------DRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVK 638 (1059)
Q Consensus 566 va~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~Gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~ 638 (1059)
++.||+|+.+.|.++. .++.+++..|+...+.+.+.+++++++|+++++||+++
T Consensus 269 v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------- 329 (802)
T 4hg6_A 269 LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------- 329 (802)
T ss_dssp CCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH-------------------
T ss_pred EEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHH-------------------
T ss_conf 5999656797678557654447765167899998888754764388454266403249999-------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 66799888889880234466531014677765551121102478514676654267887640884889987876617999
Q 001529 639 GCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIP 718 (1059)
Q Consensus 639 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~ 718 (1059)
++.||++
T Consensus 330 -------------------------------------------------------------------------~~vGgf~ 336 (802)
T 4hg6_A 330 -------------------------------------------------------------------------DEAGGFA 336 (802)
T ss_dssp -------------------------------------------------------------------------HHHTTCC
T ss_pred -------------------------------------------------------------------------HHCCCCC
T ss_conf -------------------------------------------------------------------------9708867
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99995235997647102254213421443571035443128999999888939999589998533557979999999978
Q 001529 719 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVL 798 (1059)
Q Consensus 719 ~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygSITEDi~TglrLh~rGWrsvY~~~~~aaf~GlaP~tL~a~l~QR~ 798 (1059)
+ ++++||.+++++++.+||+++|+++... ++.+|+++.++++||.
T Consensus 337 ~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~~--~~~~p~t~~~~~~Qr~ 381 (802)
T 4hg6_A 337 G---------------------------------ETITEDAETALEIHSRGWKSLYIDRAMI--AGLQPETFASFIQQRG 381 (802)
T ss_dssp C---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCCCE--EECCCCSHHHHHHHHH
T ss_pred C---------------------------------CCCCHHHHHHHHHHHCCCEEEEECCCEE--EECCCCCHHHHHHHHH
T ss_conf 8---------------------------------8803099999999976995999368879--9668889999999999
Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHH
Q ss_conf 76401147776204632113589988000155411000023479999999999999970562022003679999999999
Q 001529 799 RWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFI 878 (1059)
Q Consensus 799 RWA~G~iQIl~sk~~Pl~~g~~~~L~~~QRl~Yl~~~ly~l~sip~liylllPil~LltG~~iip~~s~~~~~~fi~lfi 878 (1059)
||++|.+|+++. ++|++ .+++++.||++|+...++++.+++.++++++|+++++++..++......++.+++..++
T Consensus 382 RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l 457 (802)
T 4hg6_A 382 RWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLA 457 (802)
T ss_dssp HHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHH-HCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 997008999988-59234---68998999999999999999999999999999999999678763389999999999999
Q ss_pred -HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEECCCCCH
Q ss_conf -9999999987654886522222203677656789999999999988419877805477988998674210430342004
Q 001529 879 -SIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLL 957 (1059)
Q Consensus 879 -s~~~~~lLe~~w~G~si~~wWr~eq~W~I~~vsa~l~Av~~allk~L~g~~~~F~VT~K~~~~d~~~~~ly~f~ws~ll 957 (1059)
...+...+ ..... .. |.++.++.+.+.. .+.+++.++ +.+++.+|.||+|+...+..+ + + .++
T Consensus 458 ~~~~~~~~~---~~~~r-~~-~~~~l~~~~~~~~-~~~a~l~~l---~~~~~~~f~VT~Kg~~~~~~~-----~-~-~~~ 521 (802)
T 4hg6_A 458 VSFLVQNAL---FARQR-WP-LVSEVYEVAQAPY-LARAIVTTL---LRPRSARFAVTAKDETLSENY-----I-S-PIY 521 (802)
T ss_dssp HHHHHHHHH---HTTTS-CT-THHHHHHHHHHHH-HHHHHHHHH---HSTTCCCCCCCCCCCCCSSCC-----B-C-TTC
T ss_pred HHHHHHHHH---HCCCH-HH-HHHHHHHHHHHHH-HHHHHHHHH---HCCCCCCCEECCCCCCCCCCC-----H-H-HHH
T ss_conf 999999999---56747-99-9999999999999-999999999---188898202779976566531-----2-2-689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999998832888872258999999999999999999861
Q 001529 958 IPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1011 (1059)
Q Consensus 958 iP~~tLlilnlvgiv~Gi~~~i~~~~~~~~~l~g~lf~~~Wvi~~l~PflkgL~ 1011 (1059)
+|+.++++++++++++|+++..... .+..+.+++++|+++|++...-++.
T Consensus 522 ~p~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 522 RPLLFTFLLCLSGVLATLVRWVAFP----GDRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999996067----7634200115999999999999999
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=312.83 Aligned_cols=85 Identities=73% Similarity=1.444 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99878886875444347764357799813204789997231236747620898788882111124799885699886762
Q 001529 1 MPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDI 80 (1059)
Q Consensus 1 ~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~ 80 (1059)
++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||+|+++
T Consensus 7 ~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~ 86 (93)
T 1weo_A 7 GPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDI 86 (93)
T ss_dssp SSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88752005887261145743547789888763006773518899999852674055458762233688876666444653
Q ss_pred CCHHH
Q ss_conf 20121
Q 001529 81 DDLEN 85 (1059)
Q Consensus 81 dd~~~ 85 (1059)
||+++
T Consensus 87 dD~~~ 91 (93)
T 1weo_A 87 DSGPS 91 (93)
T ss_dssp CCCCS
T ss_pred CCCCC
T ss_conf 32445
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=136.72 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998627999238999999599999999987397999982899925999523189988889984332334442178889
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
+...|.|+|+|+|+| |+ ..+..|+.|+++.+||. .+.++|.|||.++-|.+.+.
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~--------------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVR--------------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHH---------------------
T ss_pred CCCCCCEEEEEECCC---CH-HHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHH---------------------
T ss_conf 346982799990388---57-88999999998436579-86999996798320799999---------------------
Q ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 90122100123223668815799999999999999999999999730498445555799999999999993013422047
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~ 485 (1059)
+..
T Consensus 143 --------------------------------------------~~~--------------------------------- 145 (625)
T 2z86_A 143 --------------------------------------------EFE--------------------------------- 145 (625)
T ss_dssp --------------------------------------------TTT---------------------------------
T ss_pred --------------------------------------------HHH---------------------------------
T ss_conf --------------------------------------------856---------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 8998899998782899946679998877621034899986012569519999529998894799999997331-988997
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 564 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1059)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+.+|+|++ ..|++|.+.+..|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred CEEEEECCCCCCCCC
Q ss_conf 379990472014899
Q 001529 565 KTCYVQFPQRFDGID 579 (1059)
Q Consensus 565 ~va~VQ~PQ~F~nid 579 (1059)
.++.|+..+.+.+..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred CEEEEEEEEECCCCC
T ss_conf 639998556516742
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=125.62 Aligned_cols=262 Identities=20% Similarity=0.135 Sum_probs=153.5
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999986279992389999995999999999873979999828999259995231-8998888998433233444217888
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLT-FEALSETAEFARKWVPFCKKHNIEP 404 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt-~~al~Ea~~FA~~WvPFCkk~~Iep 404 (1059)
++.+|.|.|.||||| |+...+..||.|+++..||...+.+.|.|||..+-| .+.+.
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~-------------------- 164 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE-------------------- 164 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH--------------------
T ss_conf 888997599999789---878999999999983587457679999989998378899999--------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 99012210012322366881579999999999999999999999973049844555579999999999999301342204
Q 001529 405 RAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLG 484 (1059)
Q Consensus 405 R~Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~ 484 (1059)
+ +++
T Consensus 165 ----------------------------------~-------~~~----------------------------------- 168 (570)
T 2d7i_A 165 ----------------------------------D-------YMA----------------------------------- 168 (570)
T ss_dssp ----------------------------------H-------HHT-----------------------------------
T ss_pred ----------------------------------H-------HHH-----------------------------------
T ss_conf ----------------------------------9-------997-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 78998899998782899946679998877621034899986012569519999529998894799999997331988997
Q 001529 485 RSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGK 564 (1059)
Q Consensus 485 ~~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~Dp~~g~ 564 (1059)
..|++.++..+++.| +++|+|.+++. +.|+||+.||+|..+ .|++|.+.+-.+.+..
T Consensus 169 ----------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~~--- 225 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIARNR--- 225 (570)
T ss_dssp ----------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHHCT---
T ss_pred ----------HCCEEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCCC-CCCHHHHHHHHHHHCC---
T ss_conf ----------478089998998879-----89999999986----678889997598522-4038999999998489---
Q ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37999047201489965411000235464330223367996322466210243311889877546888862234667998
Q 001529 565 KTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPR 644 (1059)
Q Consensus 565 ~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~Gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~ 644 (1059)
.++ |.....+.+.+.. .+... ...+..+.+. -...+++..+.. ......+
T Consensus 226 ~~v-v~~~i~~~~~~~~-~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~------------- 275 (570)
T 2d7i_A 226 KTI-VCPMIDVIDHDDF-RYETQ----------AGDAMRGAFD--WEMYYKRIPIPP---ELQKADP------------- 275 (570)
T ss_dssp TEE-EEEEEEEECTTTC-CEECC----------TTSSCEEEEC--TTCCEEEECCCT---TTCCSST-------------
T ss_pred CEE-EEEEEECCCCCCH-HHCCC----------CCCCCCCCCC--CCCCCCCCCCCH---HHHCCCC-------------
T ss_conf 779-8600302278754-22156----------6776554145--433102045654---4540377-------------
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 88889880234466531014677765551121102478514676654267887640884889987876617999999952
Q 001529 645 KKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPA 724 (1059)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~ 724 (1059)
..+ + ....-.|....++++.+.++||+++.
T Consensus 276 ----------------------~~~-~-----------------------~~~~~~g~~~~irr~~~~~iGgfDe~---- 305 (570)
T 2d7i_A 276 ----------------------SDP-F-----------------------ESPVMAGGLFAVDRKWFWELGGYDPG---- 305 (570)
T ss_dssp ----------------------TSC-E-----------------------ECSSCCSSSEEEEHHHHHHTTSSCTT----
T ss_pred ----------------------CCC-E-----------------------ECCCCCCEEEEEEHHHHHHCCCCCCC----
T ss_conf ----------------------752-6-----------------------54553536899999999865898876----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC--CCCCCCCC-------HHHHHH
Q ss_conf 359976471022542134214435710354431289999998889399995899985--33557979-------999999
Q 001529 725 SLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPA--FKGSAPIN-------LSDRLN 795 (1059)
Q Consensus 725 ~~~~ea~~v~sC~YE~~T~WG~evGW~ygSITEDi~TglrLh~rGWrsvY~~~~~aa--f~GlaP~t-------L~a~l~ 795 (1059)
| ..| -.||+++++|+..+||+.+|++..... +.+..|.+ ......
T Consensus 306 -------------~-----------~~~--g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~~~~~~~~~~~~~~n~~r 359 (570)
T 2d7i_A 306 -------------L-----------EIW--GGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLKR 359 (570)
T ss_dssp -------------C-----------CSS--SSHHHHHHHHHHHTTCEEEEEEEEEEEECCCSSCCSCCCSSCCHHHHHHH
T ss_pred -------------C-----------CCC--CCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf -------------6-----------556--71138999999857984997367289997336689888740166777899
Q ss_pred HHHHHHCCCHHHHHHHCCCCC
Q ss_conf 978764011477762046321
Q 001529 796 QVLRWALGSIEILLSRHCPIW 816 (1059)
Q Consensus 796 QR~RWA~G~iQIl~sk~~Pl~ 816 (1059)
...+|.....+.++.+ .|..
T Consensus 360 ~~~~W~d~~~~~~y~~-~p~~ 379 (570)
T 2d7i_A 360 VAEVWMDEYAEYIYQR-RPEY 379 (570)
T ss_dssp HHHHHCGGGHHHHHTT-CGGG
T ss_pred HHHHHHHHHHHHHHHC-CCCC
T ss_conf 9999889999999751-9210
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=122.94 Aligned_cols=121 Identities=18% Similarity=0.128 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998627999238999999599999999987397999982899925999523-18998888998433233444217888
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML-TFEALSETAEFARKWVPFCKKHNIEP 404 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l-t~~al~Ea~~FA~~WvPFCkk~~Iep 404 (1059)
+.++|.|.|.|+||| |+...+..||.|+++.+||.....+.|.|||..+- |.+.+.
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~-------------------- 81 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE-------------------- 81 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHH--------------------
T ss_conf 867997599999678---878999999999986595767607999977999678999999--------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 99012210012322366881579999999999999999999999973049844555579999999999999301342204
Q 001529 405 RAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLG 484 (1059)
Q Consensus 405 R~Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~ 484 (1059)
+ +++
T Consensus 82 ----------------------------------~-------~~~----------------------------------- 85 (472)
T 1xhb_A 82 ----------------------------------S-------YVK----------------------------------- 85 (472)
T ss_dssp ----------------------------------H-------HHH-----------------------------------
T ss_pred ----------------------------------H-------HHH-----------------------------------
T ss_conf ----------------------------------9-------998-----------------------------------
Q ss_pred CCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHC-CCCC
Q ss_conf 7899889999878-2899946679998877621034899986012569519999529998894799999997331-9889
Q 001529 485 RSGGLDTDGNELP-RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAY 562 (1059)
Q Consensus 485 ~~g~~d~~~~~lP-~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~-Dp~~ 562 (1059)
..| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~-- 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR-- 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT--
T ss_pred ----------HCCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC--
T ss_conf ----------7798579998898787-----69999999986----15876999889857-67347999999998399--
Q ss_pred CCCEEEE
Q ss_conf 9737999
Q 001529 563 GKKTCYV 569 (1059)
Q Consensus 563 g~~va~V 569 (1059)
.++.+
T Consensus 144 --~~~v~ 148 (472)
T 1xhb_A 144 --RTVVC 148 (472)
T ss_dssp --TEEEE
T ss_pred --CEEEE
T ss_conf --77999
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=121.44 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998627999238999999599999999987397999982899925999523189988889984332334442178889
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
+.++|.|.|.||||| |+...+..||.|+++..||.....+.|.|||..+-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHHH----------------------
T ss_conf 867997799999696---8689999999999850866335149999789995678999----------------------
Q ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 90122100123223668815799999999999999999999999730498445555799999999999993013422047
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~ 485 (1059)
+
T Consensus 117 -----------------------------------------~-------------------------------------- 117 (501)
T 2ffu_A 117 -----------------------------------------L-------------------------------------- 117 (501)
T ss_dssp -----------------------------------------G--------------------------------------
T ss_pred -----------------------------------------H--------------------------------------
T ss_conf -----------------------------------------8--------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 899889999878289994667999887762103489998601256951999952999889479999999733198
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~Dp 560 (1059)
...|++.|+..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+..+.+.
T Consensus 118 --------~~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 118 --------GKIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp --------GGBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred --------HCCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf --------4189879998998868-----89999998986----68988999779830-6720799999999839
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=119.02 Aligned_cols=227 Identities=16% Similarity=0.096 Sum_probs=145.6
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998627999238999999599999999987397999982899925999523189988889984332334442178889
Q 001529 326 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 405 (1059)
Q Consensus 326 ~~~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR 405 (1059)
....|.|.|.|+||| ++ ..+..++.|+++.+|| .+.++|.|||.++-|.+.+.+
T Consensus 371 ~~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~-------------------- 424 (625)
T 2z86_A 371 LKRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE-------------------- 424 (625)
T ss_dssp CCSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH--------------------
T ss_pred HCCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHHH--------------------
T ss_conf 035971799995789---88-9999999999817699--828999989698649999999--------------------
Q ss_pred CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 90122100123223668815799999999999999999999999730498445555799999999999993013422047
Q 001529 406 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 485 (1059)
Q Consensus 406 ~Pe~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~ 485 (1059)
+. .
T Consensus 425 -----------------------------------------~~---~--------------------------------- 427 (625)
T 2z86_A 425 -----------------------------------------HY---A--------------------------------- 427 (625)
T ss_dssp -----------------------------------------HH---T---------------------------------
T ss_pred -----------------------------------------HH---H---------------------------------
T ss_conf -----------------------------------------88---5---------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCC
Q ss_conf 899889999878289994667999887762103489998601256951999952999889479999999733-1988997
Q 001529 486 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGK 564 (1059)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff-~Dp~~g~ 564 (1059)
..|++.++. ++. ..+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..| .+|
T Consensus 428 ---------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~---- 483 (625)
T 2z86_A 428 ---------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL---- 483 (625)
T ss_dssp ---------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEE-CCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ---------499389991-798-----8989999999985----67787999889766-28359999999998479----
Q ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37999047201489965411000235464330223367996322466210243311889877546888862234667998
Q 001529 565 KTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPR 644 (1059)
Q Consensus 565 ~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~Gldg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~ 644 (1059)
+++.|.....+.+.+............+ ..+.+....++|.+.++||+
T Consensus 484 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~r~--------------------------- 531 (625)
T 2z86_A 484 SLACVYTTNRNIDREGNLISNGYNWPIY-----SREKLTSAMICHHFRMFTAR--------------------------- 531 (625)
T ss_dssp TCSEEEEEEEEECTTSCEEEECCCCSSC-----CHHHHTTSCCCCSCEEEEHH---------------------------
T ss_pred CEEEEEEEEEEECCCCCEECCCCCCCCC-----CHHHHHHCCCCCCEEEEEHH---------------------------
T ss_conf 8139982048987999874167666657-----88898535467746898899---------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 88889880234466531014677765551121102478514676654267887640884889987876617999999952
Q 001529 645 KKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPA 724 (1059)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~ 724 (1059)
++.++||+++.
T Consensus 532 -----------------------------------------------------------------~~~~~ggfd~~---- 542 (625)
T 2z86_A 532 -----------------------------------------------------------------AWNLTEGFNES---- 542 (625)
T ss_dssp -----------------------------------------------------------------HHTTTTCCCSS----
T ss_pred -----------------------------------------------------------------HHHHHCCCCCC----
T ss_conf -----------------------------------------------------------------99972899973----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 3599764710225421342144357103544312899999988893999958999853-355797999999997876401
Q 001529 725 SLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAF-KGSAPINLSDRLNQVLRWALG 803 (1059)
Q Consensus 725 ~~~~ea~~v~sC~YE~~T~WG~evGW~ygSITEDi~TglrLh~rGWrsvY~~~~~aaf-~GlaP~tL~a~l~QR~RWA~G 803 (1059)
-...||.++.+|+..+| +.+|++...... ......+......|+.+|.+.
T Consensus 543 ----------------------------~~~~eD~dl~~r~~~~g-~~~~~~~~~~~~r~h~~~~s~~~~~~~~~~~~~~ 593 (625)
T 2z86_A 543 ----------------------------ISNAVDYDMYLKLSEVG-PFKHINKICYNRVLHGENTSIKKLDIQKENHFKV 593 (625)
T ss_dssp ----------------------------CSSCHHHHHHHHHTTTS-CEEEEEEEEEEEECC----CCSSHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHHHHC-CEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf ----------------------------68727999999999749-9998287689999889865211489999999999
Q ss_pred CHHHHH
Q ss_conf 147776
Q 001529 804 SIEILL 809 (1059)
Q Consensus 804 ~iQIl~ 809 (1059)
..+.+.
T Consensus 594 ~~~~l~ 599 (625)
T 2z86_A 594 VNESLS 599 (625)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999998
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=113.66 Aligned_cols=124 Identities=15% Similarity=0.260 Sum_probs=92.2
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 86279992389999995999999999873979999828999259995231899888899843323344421788899012
Q 001529 330 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 409 (1059)
Q Consensus 330 p~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR~Pe~ 409 (1059)
|.|.|.|||+| ++ ..+..|+.|+++.+|| .+.++|.|||..+-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHH------------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108999999------------------------
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 21001232236688157999999999999999999999997304984455557999999999999930134220478998
Q 001529 410 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 489 (1059)
Q Consensus 410 YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~~g~~ 489 (1059)
+ . .
T Consensus 51 -------------------------------------~----~-------------------------------~----- 53 (255)
T 1qg8_A 51 -------------------------------------F----L-------------------------------N----- 53 (255)
T ss_dssp -------------------------------------G----G-------------------------------G-----
T ss_pred -------------------------------------H----H-------------------------------H-----
T ss_conf -------------------------------------8----6-------------------------------0-----
Q ss_pred CCCCCCCCCEEEEECCCCCCC----CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 899998782899946679998----877621034899986012569519999529998894799999997331-988997
Q 001529 490 DTDGNELPRLVYVSREKRPGF----QHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 564 (1059)
Q Consensus 490 d~~~~~lP~lvYvsRekRPg~----~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1059)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------CCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ------698899964653-332221466789999999987----58888999689876-28279999999998589----
Q ss_pred CEEEEECCCCCC
Q ss_conf 379990472014
Q 001529 565 KTCYVQFPQRFD 576 (1059)
Q Consensus 565 ~va~VQ~PQ~F~ 576 (1059)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CCEEEEECEEEE
T ss_conf 905998432899
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=106.61 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=85.1
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98627999238999999599999999987397999982899925999523189988889984332334442178889901
Q 001529 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPE 408 (1059)
Q Consensus 329 lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR~Pe 408 (1059)
.|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||.++-|.+.+.+.
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~---------------------- 52 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA---------------------- 52 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHH----------------------
T ss_conf 966999997678---78-9999999999827789--8699999789987579999999----------------------
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 22100123223668815799999999999999999999999730498445555799999999999993013422047899
Q 001529 409 FYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGG 488 (1059)
Q Consensus 409 ~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~~g~ 488 (1059)
.+ .+
T Consensus 53 -----------------------------~~----------------------------------~~------------- 56 (729)
T 3l7i_A 53 -----------------------------IK----------------------------------DY------------- 56 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------HH----------------------------------HC-------------
T ss_conf -----------------------------97----------------------------------47-------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 88999987828999466799988776210348999860125695199995299988947999999973319889973799
Q 001529 489 LDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCY 568 (1059)
Q Consensus 489 ~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~Dp~~g~~va~ 568 (1059)
=+++.|+..++.. ..++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..+.++ ++.+
T Consensus 57 -------~~~i~~i~~~~n~-----G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~----d~v~ 115 (729)
T 3l7i_A 57 -------DKNIRFIDLDENS-----GHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT----DGLI 115 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCCEEEEECCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHCCC----CEEE
T ss_conf -------9988999888877-----879999999986----66998999889877-7846999999982379----9899
Q ss_pred EEC
Q ss_conf 904
Q 001529 569 VQF 571 (1059)
Q Consensus 569 VQ~ 571 (1059)
...
T Consensus 116 ~~~ 118 (729)
T 3l7i_A 116 API 118 (729)
T ss_dssp ---
T ss_pred EEE
T ss_conf 866
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=106.18 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99862799923899999959999999998739799998289992599952318998888998433233444217888990
Q 001529 328 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 407 (1059)
Q Consensus 328 ~lp~VDvfV~T~dP~kEp~~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt~~al~Ea~~FA~~WvPFCkk~~IepR~P 407 (1059)
..|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||..+-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHH----------------------
T ss_conf 9984899996689---77-8999999999957689--869999989998678999999----------------------
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 12210012322366881579999999999999999999999973049844555579999999999999301342204789
Q 001529 408 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 487 (1059)
Q Consensus 408 e~YFs~~~d~~~~~~~~~f~~e~r~mkreYeefk~rI~~l~~~~~~~p~~~w~m~dgt~w~g~~~~dhp~iiqv~~~~~g 487 (1059)
+.++
T Consensus 55 ---------------------------------------~~~~------------------------------------- 58 (240)
T 3bcv_A 55 ---------------------------------------YAAQ------------------------------------- 58 (240)
T ss_dssp ---------------------------------------HHHH-------------------------------------
T ss_pred ---------------------------------------HHHH-------------------------------------
T ss_conf ---------------------------------------9965-------------------------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9889999878289994667999887762103489998601256951999952999889479999999733198
Q 001529 488 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 560 (1059)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRPg~~hh~KAGalNallrvSavltngp~il~lDaD~~~~~p~~Lr~amcff~Dp 560 (1059)
.|++.++..+ ...+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 --------~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEECC------CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf --------8978999889------99949999999997----68999999879875-8889999999999846
Done!