BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001530
         (1059 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KF8|A Chain A, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
 pdb|3KF8|C Chain C, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
          Length = 220

 Score = 34.3 bits (77), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)

Query: 430 DKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRN 489
           ++L  PKT I+       +C    + TP  +F+     HQAP   +++P   L   D+ N
Sbjct: 7   NRLLYPKTKIDWGPGENHIC----LKTPFKNFYVIELFHQAPTFDKTIP---LFISDINN 59

Query: 490 NPSLNDNIVKQLKASYSCFDEEADH 514
           +P+L           Y  ++  ADH
Sbjct: 60  SPNL-----------YGIYNYIADH 73


>pdb|4G54|A Chain A, Crystal Structure Of A Periplasmic Domain Of The Epsab
           Fusion Protein Of The Vibrio Vulnificus Type Ii
           Secretion System
          Length = 258

 Score = 31.2 bits (69), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 903 MVSKDETWRDYKRVKDQGEENPAKMKKTESKATVVSTSDARETSIVLQVSEPST 956
           MVS  E WR   + + QGEE   +  +  S A ++ T    ET  V+ V++ ++
Sbjct: 202 MVSLSEPWRALTQAEKQGEEQVMRYPEFPSLAPLLRTYPLAETGDVINVADQTS 255


>pdb|1JMX|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
           Dehydrogenase From Pseudomonas Putida
 pdb|1JMZ|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
           Dehydrogenase From Pseudomonas Putida With Inhibitor
          Length = 349

 Score = 30.4 bits (67), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 461 FFTTYKLHQAPNLCQSVPNRLLECIDLRNNPSLNDNIVKQLKASYSC--FDEEADHAYQG 518
           +FT  +  + PN    V NRL +  DL+    +       L  +Y C  FD++ D  Y G
Sbjct: 257 YFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIK---AANLDHTYYCVAFDKKGDKLYLG 312

Query: 519 RSYSDCSLFS--STQPASEIRKPFG 541
            +++D ++F+  + +    I+ P G
Sbjct: 313 GTFNDLAVFNPDTLEKVKNIKLPGG 337


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,692,107
Number of Sequences: 62578
Number of extensions: 1049101
Number of successful extensions: 1620
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 7
length of query: 1059
length of database: 14,973,337
effective HSP length: 109
effective length of query: 950
effective length of database: 8,152,335
effective search space: 7744718250
effective search space used: 7744718250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)