Query 001530
Match_columns 1059
No_of_seqs 338 out of 607
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0163 Myosin class VI heavy 99.4 1.2E-12 2.7E-17 152.2 11.4 56 978-1035 1057-1124(1259)
2 PF03941 INCENP_ARK-bind: Inne 98.6 7.1E-09 1.5E-13 88.5 -0.8 48 1003-1050 10-57 (57)
3 PTZ00121 MAEBL; Provisional 98.5 2.4E-06 5.2E-11 106.1 18.3 13 448-460 752-764 (2084)
4 PTZ00121 MAEBL; Provisional 98.4 1.5E-05 3.4E-10 99.3 19.3 19 206-224 427-445 (2084)
5 KOG1029 Endocytic adaptor prot 98.2 4.6E-05 9.9E-10 91.1 18.2 64 772-837 313-376 (1118)
6 KOG4364 Chromatin assembly fac 98.2 3.7E-05 8.1E-10 90.8 16.9 56 564-629 37-92 (811)
7 PF11600 CAF-1_p150: Chromatin 97.9 0.0014 3E-08 68.8 19.3 15 921-935 182-196 (216)
8 PRK09510 tolA cell envelope in 97.8 0.0012 2.7E-08 75.2 20.0 37 1011-1050 349-386 (387)
9 KOG4364 Chromatin assembly fac 97.8 0.0005 1.1E-08 81.7 15.6 15 1006-1020 490-504 (811)
10 PF05672 MAP7: MAP7 (E-MAP-115 97.5 0.0039 8.4E-08 64.6 16.7 52 795-847 21-72 (171)
11 KOG1029 Endocytic adaptor prot 97.5 0.0023 5E-08 77.3 16.9 16 853-868 383-398 (1118)
12 PRK09510 tolA cell envelope in 97.5 0.0087 1.9E-07 68.5 20.3 6 922-927 260-265 (387)
13 KOG0163 Myosin class VI heavy 97.4 0.0019 4.1E-08 77.8 13.8 80 820-905 936-1019(1259)
14 KOG1144 Translation initiation 97.3 0.002 4.3E-08 77.9 12.0 29 851-879 231-259 (1064)
15 KOG4456 Inner centromere prote 97.2 0.00012 2.5E-09 72.3 1.5 65 994-1058 49-116 (134)
16 COG3064 TolA Membrane protein 96.9 0.033 7.2E-07 62.4 16.7 8 876-883 192-199 (387)
17 KOG2072 Translation initiation 96.8 0.032 7E-07 68.4 16.8 30 507-545 477-506 (988)
18 KOG2891 Surface glycoprotein [ 96.7 0.033 7.1E-07 61.7 14.1 43 437-479 7-51 (445)
19 KOG1144 Translation initiation 96.7 0.022 4.9E-07 69.4 13.8 6 1006-1011 437-442 (1064)
20 KOG2412 Nuclear-export-signal 96.5 0.05 1.1E-06 64.4 15.3 9 839-847 224-232 (591)
21 PF05262 Borrelia_P83: Borreli 96.5 0.07 1.5E-06 63.0 16.2 25 781-805 193-218 (489)
22 PF05262 Borrelia_P83: Borreli 95.9 0.32 7E-06 57.6 17.7 11 934-944 390-400 (489)
23 KOG2072 Translation initiation 95.7 0.95 2.1E-05 56.3 20.9 14 646-659 512-525 (988)
24 KOG4661 Hsp27-ERE-TATA-binding 95.7 0.18 3.9E-06 60.2 14.2 36 414-450 294-329 (940)
25 KOG2891 Surface glycoprotein [ 95.6 0.41 9E-06 53.4 15.8 16 433-448 43-58 (445)
26 KOG4661 Hsp27-ERE-TATA-binding 95.4 0.61 1.3E-05 56.0 17.4 15 88-102 54-69 (940)
27 PRK00247 putative inner membra 93.4 0.74 1.6E-05 53.9 12.1 32 756-787 254-285 (429)
28 PF15346 ARGLU: Arginine and g 93.3 4.3 9.2E-05 42.0 15.8 16 853-868 88-103 (149)
29 PF12037 DUF3523: Domain of un 92.7 15 0.00032 41.5 20.1 6 731-736 26-31 (276)
30 KOG3654 Uncharacterized CH dom 92.7 0.5 1.1E-05 56.0 9.3 19 825-843 415-433 (708)
31 KOG2002 TPR-containing nuclear 92.2 0.33 7.2E-06 60.9 7.6 16 466-481 552-567 (1018)
32 PF15236 CCDC66: Coiled-coil d 92.2 9.3 0.0002 39.9 16.6 7 778-784 42-48 (157)
33 KOG3654 Uncharacterized CH dom 91.9 0.68 1.5E-05 55.0 9.2 17 853-869 426-442 (708)
34 PF15346 ARGLU: Arginine and g 91.9 6.4 0.00014 40.8 15.0 19 856-874 84-102 (149)
35 KOG0742 AAA+-type ATPase [Post 91.6 14 0.0003 44.2 18.9 6 769-774 97-102 (630)
36 PF02029 Caldesmon: Caldesmon; 90.8 1 2.2E-05 53.6 9.4 10 936-945 382-391 (492)
37 KOG2689 Predicted ubiquitin re 90.5 2.9 6.2E-05 46.9 11.8 7 906-912 172-178 (290)
38 TIGR03319 YmdA_YtgF conserved 90.4 18 0.00039 43.5 19.1 27 922-948 193-220 (514)
39 PRK12704 phosphodiesterase; Pr 90.2 18 0.0004 43.5 19.0 27 923-949 200-227 (520)
40 PRK12705 hypothetical protein; 90.0 21 0.00046 43.1 19.2 27 922-948 187-214 (508)
41 PRK00106 hypothetical protein; 88.7 31 0.00068 42.0 19.4 27 923-949 215-242 (535)
42 KOG2002 TPR-containing nuclear 88.4 16 0.00034 47.0 17.1 8 442-449 503-510 (1018)
43 KOG3634 Troponin [Cytoskeleton 87.7 3 6.4E-05 47.8 9.6 14 962-975 221-234 (361)
44 PF09726 Macoilin: Transmembra 87.5 20 0.00042 44.9 17.2 10 403-412 160-169 (697)
45 PF07946 DUF1682: Protein of u 86.9 2 4.4E-05 48.1 7.9 17 616-632 158-174 (321)
46 PF07946 DUF1682: Protein of u 85.9 3.4 7.3E-05 46.4 8.9 14 541-554 92-105 (321)
47 KOG0742 AAA+-type ATPase [Post 85.4 48 0.001 40.0 17.8 8 848-855 166-173 (630)
48 KOG2357 Uncharacterized conser 82.2 6.2 0.00013 46.4 9.1 27 606-632 252-278 (440)
49 PF09726 Macoilin: Transmembra 77.9 82 0.0018 39.6 17.3 7 474-480 198-204 (697)
50 PRK06568 F0F1 ATP synthase sub 75.2 1.1E+02 0.0024 31.9 15.1 17 771-787 22-38 (154)
51 PRK09174 F0F1 ATP synthase sub 72.7 93 0.002 33.5 14.0 19 754-772 48-66 (204)
52 KOG1265 Phospholipase C [Lipid 71.6 2.2E+02 0.0047 37.4 18.3 25 220-244 473-498 (1189)
53 KOG2357 Uncharacterized conser 69.2 16 0.00036 43.1 8.0 16 766-781 344-359 (440)
54 TIGR03321 alt_F1F0_F0_B altern 67.2 1.9E+02 0.0042 31.4 15.2 18 770-787 22-39 (246)
55 KOG0579 Ste20-like serine/thre 65.9 2.3E+02 0.005 36.3 16.6 14 505-518 536-549 (1187)
56 PRK07352 F0F1 ATP synthase sub 65.1 1.7E+02 0.0037 30.2 13.6 13 775-787 41-53 (174)
57 PRK14474 F0F1 ATP synthase sub 64.7 2.3E+02 0.0049 31.4 15.3 18 770-787 22-39 (250)
58 PF09731 Mitofilin: Mitochondr 64.2 3.3E+02 0.0071 33.0 19.2 9 544-552 62-70 (582)
59 PRK00409 recombination and DNA 63.4 1.5E+02 0.0033 37.7 15.3 15 363-377 184-198 (782)
60 PRK13428 F0F1 ATP synthase sub 62.8 1.9E+02 0.0041 34.4 15.2 19 769-787 17-35 (445)
61 PLN02316 synthase/transferase 60.8 22 0.00048 46.3 7.7 11 708-718 127-137 (1036)
62 PRK13454 F0F1 ATP synthase sub 59.2 2.3E+02 0.0051 29.7 14.5 14 758-771 30-43 (181)
63 PTZ00491 major vault protein; 58.2 2.8E+02 0.0061 36.0 16.1 63 36-99 23-90 (850)
64 KOG2253 U1 snRNP complex, subu 58.0 1.3E+02 0.0028 37.9 12.8 12 480-491 85-96 (668)
65 PRK06231 F0F1 ATP synthase sub 55.1 3E+02 0.0065 29.6 15.3 13 775-787 70-82 (205)
66 PRK12705 hypothetical protein; 53.4 5.2E+02 0.011 31.9 17.1 6 772-777 24-29 (508)
67 PRK12472 hypothetical protein; 52.8 4.1E+02 0.0089 32.8 15.5 7 734-740 172-178 (508)
68 CHL00019 atpF ATP synthase CF0 52.2 3E+02 0.0065 28.7 15.2 18 770-787 41-58 (184)
69 PRK12472 hypothetical protein; 51.8 2.5E+02 0.0053 34.5 13.6 17 927-943 317-333 (508)
70 KOG0288 WD40 repeat protein Ti 49.8 5.6E+02 0.012 31.2 16.6 7 926-932 149-155 (459)
71 KOG1363 Predicted regulator of 49.8 54 0.0012 39.4 8.0 19 469-487 33-51 (460)
72 TIGR03321 alt_F1F0_F0_B altern 49.4 3.9E+02 0.0084 29.2 14.6 20 762-781 8-27 (246)
73 PRK08475 F0F1 ATP synthase sub 49.2 3.2E+02 0.007 28.3 15.3 28 760-787 23-56 (167)
74 CHL00118 atpG ATP synthase CF0 47.3 3.3E+02 0.0071 27.8 15.2 10 761-770 24-33 (156)
75 KOG3915 Transcription regulato 46.9 1.4E+02 0.003 36.5 10.4 17 252-268 163-179 (641)
76 PF06637 PV-1: PV-1 protein (P 46.8 3.8E+02 0.0083 32.2 13.7 24 875-898 341-364 (442)
77 PRK14474 F0F1 ATP synthase sub 46.5 4.5E+02 0.0097 29.1 14.8 22 762-783 8-29 (250)
78 KOG1363 Predicted regulator of 45.9 98 0.0021 37.3 9.3 6 671-676 148-153 (460)
79 KOG1265 Phospholipase C [Lipid 45.5 8.9E+02 0.019 32.3 17.4 8 149-156 373-380 (1189)
80 KOG0161 Myosin class II heavy 44.4 1.1E+03 0.024 33.7 19.3 25 484-512 507-531 (1930)
81 PRK14475 F0F1 ATP synthase sub 41.1 4.2E+02 0.0091 27.3 15.1 8 780-787 37-44 (167)
82 PRK13460 F0F1 ATP synthase sub 40.3 4.4E+02 0.0095 27.3 15.2 28 760-787 17-50 (173)
83 PRK13455 F0F1 ATP synthase sub 38.9 4.7E+02 0.01 27.2 14.9 9 759-767 27-35 (184)
84 KOG0161 Myosin class II heavy 36.8 1.3E+03 0.028 33.1 18.2 32 731-766 746-779 (1930)
85 PRK14473 F0F1 ATP synthase sub 36.1 4.9E+02 0.011 26.5 15.3 29 759-787 8-42 (164)
86 KOG2441 mRNA splicing factor/p 35.0 1.8E+02 0.004 34.9 9.0 10 1040-1049 494-503 (506)
87 PF06991 Prp19_bind: Splicing 34.4 4.1E+02 0.0089 30.3 11.4 27 992-1024 231-257 (276)
88 KOG0612 Rho-associated, coiled 33.3 1.4E+03 0.03 31.5 16.8 16 84-99 5-20 (1317)
89 KOG4691 Uncharacterized conser 33.0 6.1E+02 0.013 28.2 11.8 7 876-882 156-162 (227)
90 KOG2441 mRNA splicing factor/p 32.9 2E+02 0.0044 34.5 8.9 11 559-569 43-53 (506)
91 TIGR02680 conserved hypothetic 32.2 1.5E+03 0.032 31.1 18.0 10 731-740 189-198 (1353)
92 KOG4691 Uncharacterized conser 30.9 7.8E+02 0.017 27.4 12.2 11 908-918 181-191 (227)
93 KOG2223 Uncharacterized conser 30.6 1.1E+02 0.0023 37.2 6.3 9 794-802 227-235 (586)
94 KOG0681 Actin-related protein 30.2 4.9E+02 0.011 32.7 11.6 42 533-577 79-127 (645)
95 PRK13453 F0F1 ATP synthase sub 29.4 6.6E+02 0.014 26.1 15.2 13 759-771 18-30 (173)
96 KOG0249 LAR-interacting protei 28.6 1.5E+03 0.031 29.8 16.2 14 814-827 174-187 (916)
97 PRK13453 F0F1 ATP synthase sub 28.0 7E+02 0.015 25.9 15.3 17 771-787 36-52 (173)
98 PRK06568 F0F1 ATP synthase sub 27.9 7.3E+02 0.016 26.1 13.8 6 765-770 10-15 (154)
99 KOG4848 Extracellular matrix-a 27.8 8.8E+02 0.019 27.0 16.7 8 878-885 196-203 (225)
100 PRK14471 F0F1 ATP synthase sub 27.8 6.7E+02 0.014 25.6 15.1 28 760-787 9-42 (164)
101 PRK14472 F0F1 ATP synthase sub 27.5 7.1E+02 0.015 25.8 17.1 12 759-770 18-29 (175)
102 KOG4722 Zn-finger protein [Gen 26.5 1.3E+03 0.028 28.5 17.7 17 476-492 8-24 (672)
103 KOG0681 Actin-related protein 22.5 2E+02 0.0042 35.9 6.6 15 1028-1043 520-535 (645)
104 PRK07353 F0F1 ATP synthase sub 22.4 7.5E+02 0.016 24.3 15.2 17 771-787 23-39 (140)
105 PF04094 DUF390: Protein of un 21.4 1.9E+03 0.042 28.7 15.4 11 1024-1034 751-761 (828)
106 PTZ00491 major vault protein; 21.3 2E+03 0.044 28.9 15.9 10 732-741 600-609 (850)
107 PRK13461 F0F1 ATP synthase sub 21.2 8.7E+02 0.019 24.6 14.6 123 755-878 1-124 (159)
108 KOG3756 Pinin (desmosome-assoc 21.0 1.4E+03 0.031 27.0 17.6 11 709-719 78-88 (340)
109 KOG4055 Uncharacterized conser 20.8 3.5E+02 0.0076 29.7 7.4 7 936-942 199-205 (213)
110 KOG1996 mRNA splicing factor [ 20.7 1.5E+02 0.0032 34.4 5.0 8 763-770 81-88 (378)
111 KOG2668 Flotillins [Intracellu 20.6 1.5E+03 0.033 27.3 16.4 27 587-619 16-42 (428)
112 KOG0717 Molecular chaperone (D 20.4 1.7E+03 0.037 27.7 13.8 12 725-736 111-122 (508)
113 PRK08476 F0F1 ATP synthase sub 20.0 9.2E+02 0.02 24.4 14.6 122 756-878 4-126 (141)
No 1
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=99.39 E-value=1.2e-12 Score=152.23 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=45.1
Q ss_pred cCCCCCCcccCCCCCCCCCCc------ccc------hhhhccCCCCchhhhhhhhhhhcccccCCCCCcc
Q 001530 978 TNQNQEPSYDISPYKDSDNEE------EED------DDDRLNTKFIPSWASKRASALIIPSLLSVSPEVI 1035 (1059)
Q Consensus 978 dnSs~e~SYdiSPYk~sDdeD------D~e------DDe~Rr~K~IPSWASKnaLaqALlSQqrVDPDkI 1035 (1059)
......+.||+|.|+|++++| |.+ ++||||+|.|+.|+++|..++.++.+ +. |..+
T Consensus 1057 ~aa~~~~KYDl~~wkyaeLRDtINTS~DieLL~ACreEFhRRLkvY~~WKskN~~~~~~~~~-RA-p~sv 1124 (1259)
T KOG0163|consen 1057 QAALGKQKYDLSKWKYAELRDTINTSCDIELLEACREEFHRRLKVYHAWKSKNRKRTTMPEN-RA-PLSV 1124 (1259)
T ss_pred HHHhccCccccccccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcc-cc-chhH
Confidence 334567899999999999999 443 78999999999999999888777776 55 4443
No 2
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=98.58 E-value=7.1e-09 Score=88.48 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=32.2
Q ss_pred hhhccCCCCchhhhhhhhhhhcccccCCCCCccCCCCCCCCccccccc
Q 001530 1003 DDRLNTKFIPSWASKRASALIIPSLLSVSPEVIFPPGSFCSISEVLLP 1050 (1059)
Q Consensus 1003 De~Rr~K~IPSWASKnaLaqALlSQqrVDPDkIF~~~~spdLSEIFlP 1050 (1059)
|+..++|.||+||++..|..+|..|+.+||+.||+.+..|+|.+||.+
T Consensus 10 d~~~~~k~iP~WA~~~~L~~~L~~Q~~~Dpd~IFG~~~~~~LeeiF~~ 57 (57)
T PF03941_consen 10 DEDEPRKPIPSWAQSPNLRQALKKQQNIDPDEIFGPIPPLNLEEIFNK 57 (57)
T ss_dssp ----------GGGSHHHHHHHHHHHHHS-HHHHCTTSB---CCCCTS-
T ss_pred ccccccCCCCCCcCcHHHHHHHHHHhccCHHHHcCCCCCCCHHHHccC
Confidence 344588999999999999999999999999999999999999999964
No 3
>PTZ00121 MAEBL; Provisional
Probab=98.53 E-value=2.4e-06 Score=106.10 Aligned_cols=13 Identities=38% Similarity=0.766 Sum_probs=11.4
Q ss_pred HHhhhhccCCCcc
Q 001530 448 LCKSACMNTPLSH 460 (1059)
Q Consensus 448 lcks~~~~tp~~h 460 (1059)
+|+|+.+.+|++-
T Consensus 752 MCks~v~~~~~~~ 764 (2084)
T PTZ00121 752 MCKSKIFPNPFSM 764 (2084)
T ss_pred hHHHHhhcCccch
Confidence 7999999999874
No 4
>PTZ00121 MAEBL; Provisional
Probab=98.36 E-value=1.5e-05 Score=99.28 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=10.6
Q ss_pred cCCCCccccccCCCccccc
Q 001530 206 ILPGNNFSCGAEDSWPQHK 224 (1059)
Q Consensus 206 ~~~~~~f~~~~~~s~pqhk 224 (1059)
+|..++|.|.----+|+-.
T Consensus 427 ~LTAn~fd~~Qni~yp~ie 445 (2084)
T PTZ00121 427 ILTANSFDFAQNIIYPELE 445 (2084)
T ss_pred eeeccccccccccccchHH
Confidence 4556666665545555543
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=4.6e-05 Score=91.12 Aligned_cols=64 Identities=30% Similarity=0.356 Sum_probs=38.7
Q ss_pred hhhhhhHhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001530 772 LVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKK 837 (1059)
Q Consensus 772 lvQqKQK~AqIdEKrEvr~KalEAEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~EeeRR 837 (1059)
-|-+|.|..+..+..+.++.+..-++.++|+++. .+++.++|+.+++|.|+|+|.+++.|.+++
T Consensus 313 TFEDKrkeNy~kGqaELerRRq~leeqqqreree--~eqkEreE~ekkererqEqErk~qlElekq 376 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRRQALEEQQQREREE--VEQKEREEEEKKERERQEQERKAQLELEKQ 376 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888777777655555555555554332 334444555556677777776666655543
No 6
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.20 E-value=3.7e-05 Score=90.76 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCCCCCcccccccchhhhhhhhhhcccccccCccccccccccCCCCCCCCcCCCCCCCCccccccc
Q 001530 564 SNPDLPCISEENENTDEVVNVFQEGISLEVASPVGELWDWKKSNSSSSDKQGSLNPELPFISEEDE 629 (1059)
Q Consensus 564 ~~p~lpci~eene~~~~~~~~f~egi~~~~~sp~~~l~~~~~s~s~~~~~~~~~~~~l~~IsEEnE 629 (1059)
|.-..|-|++=|+.-|..-+-|.+|.... +|-- .-.--..|.++|.-.|.|||++-
T Consensus 37 S~~~e~~t~~~N~~~d~~~~d~~~~~~~~--~~~~--------~~~~~~~~~~~n~~~~L~ae~~~ 92 (811)
T KOG4364|consen 37 SEEKESQTSSLNLEMDGLFDDFREVMDKS--KRTD--------LFSGFSECSSLNSMVALLAEEMS 92 (811)
T ss_pred ccccccchhhhhcccchhHHHHHHHhccc--cccc--------cccCceeccccccccchhhhhcc
Confidence 33445778888999998888888886551 1100 00112357888888899998874
No 7
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=97.85 E-value=0.0014 Score=68.83 Aligned_cols=15 Identities=20% Similarity=-0.031 Sum_probs=11.4
Q ss_pred ccCcccccccCcccc
Q 001530 921 EENPAKMKKTESKAT 935 (1059)
Q Consensus 921 eNnl~k~P~TES~as 935 (1059)
.++||.+|.+...+.
T Consensus 182 ~~~FF~k~~~~~~~~ 196 (216)
T PF11600_consen 182 ITSFFKKPKTPKAPK 196 (216)
T ss_pred HHHHhCCCCCCCCCC
Confidence 389999888766664
No 8
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.84 E-value=0.0012 Score=75.17 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=15.1
Q ss_pred CchhhhhhhhhhhcccccCCCCCc-cCCCCCCCCccccccc
Q 001530 1011 IPSWASKRASALIIPSLLSVSPEV-IFPPGSFCSISEVLLP 1050 (1059)
Q Consensus 1011 IPSWASKnaLaqALlSQqrVDPDk-IF~~~~spdLSEIFlP 1050 (1059)
.|.|++.-.-+ ....-.|.+|+. +|.....++|. |.|
T Consensus 349 d~aldrAA~~A-ar~a~lP~pP~~~vye~~k~i~lt--F~P 386 (387)
T PRK09510 349 DPALCQAALAA-AKTAKIPKPPSQEVYEKFKNAPLD--FKP 386 (387)
T ss_pred CHHHHHHHHHH-HHcCCCCCCCchHHHHhhccceee--eCC
Confidence 34555544222 222222444442 55443334444 554
No 9
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.76 E-value=0.0005 Score=81.71 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=8.6
Q ss_pred ccCCCCchhhhhhhh
Q 001530 1006 LNTKFIPSWASKRAS 1020 (1059)
Q Consensus 1006 Rr~K~IPSWASKnaL 1020 (1059)
||-.||++|-.+..+
T Consensus 490 rRP~YyGTWrKKS~~ 504 (811)
T KOG4364|consen 490 RRPGYYGTWRKKSQV 504 (811)
T ss_pred cCCcccccccccccc
Confidence 333477777765543
No 10
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=97.54 E-value=0.0039 Score=64.57 Aligned_cols=52 Identities=31% Similarity=0.335 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001530 795 AAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLELQKKKKEEEKKKKL 847 (1059)
Q Consensus 795 AEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~EeeRRKkEEERkKKE 847 (1059)
+++|.+..++++...|.++ +..++++.++++.+++..++..++..+++.+.+
T Consensus 21 aEEAtkiLAEkRRlAReQk-ErEE~ER~ekEE~er~~ree~~~k~~Ee~~r~e 72 (171)
T PF05672_consen 21 AEEATKILAEKRRLAREQK-EREEQERLEKEEQERRKREELARKLAEERARRE 72 (171)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655544333332 223334444444444444444444444444333
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0023 Score=77.29 Aligned_cols=16 Identities=63% Similarity=0.844 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001530 853 RKRQREEEERKEKERK 868 (1059)
Q Consensus 853 RKRqeEEekRKEeErK 868 (1059)
-.+++||++||+.|++
T Consensus 383 iE~qrEEerkkeie~r 398 (1118)
T KOG1029|consen 383 IERQREEERKKEIERR 398 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 12
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.50 E-value=0.0087 Score=68.53 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=2.8
Q ss_pred cCcccc
Q 001530 922 ENPAKM 927 (1059)
Q Consensus 922 Nnl~k~ 927 (1059)
+.||..
T Consensus 260 dd~~~g 265 (387)
T PRK09510 260 DDLFGG 265 (387)
T ss_pred HHHhhc
Confidence 445543
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.39 E-value=0.0019 Score=77.78 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001530 820 ERAKLEQENLKQLELQKKKKEEEKKKKLADMAARKRQREEEERK-EKERKRK--RVMESRRQQQEHEEKLRAKKEEERKK 896 (1059)
Q Consensus 820 EraRkEEEEkRk~EeeRRKkEEERkKKEaE~eeRKRqeEEekRK-EeErKRK--r~EEeRkkQaE~EeK~ReeeEeErK~ 896 (1059)
||+|+|+|+++ |+++||+++.++|++.+++++||++++ |+++++- ..+|+..+++|+|.|++.+.|+||+.
T Consensus 936 ER~rrEaeek~------rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D 1009 (1259)
T KOG0163|consen 936 ERKRREAEEKR------RREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRD 1009 (1259)
T ss_pred HHHhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555554433 444555556666666666665555433 3333322 33344556677777888888888888
Q ss_pred HHHH-Hhhhh
Q 001530 897 KEAD-LLMVS 905 (1059)
Q Consensus 897 KEE~-rkEqE 905 (1059)
++-. |.+..
T Consensus 1010 ~~la~RlA~s 1019 (1259)
T KOG0163|consen 1010 HELALRLANS 1019 (1259)
T ss_pred HHHHHHHhhc
Confidence 8877 55543
No 14
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.002 Score=77.94 Aligned_cols=29 Identities=34% Similarity=0.569 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001530 851 AARKRQREEEERKEKERKRKRVMESRRQQ 879 (1059)
Q Consensus 851 eeRKRqeEEekRKEeErKRKr~EEeRkkQ 879 (1059)
++++|.+||+.|+++|++|++.|+++..+
T Consensus 231 E~qkreeEE~~r~eeEEer~~ee~E~~~e 259 (1064)
T KOG1144|consen 231 ERQKREEEERLRREEEEERRREEEEAQEE 259 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555665555555555544443
No 15
>KOG4456 consensus Inner centromere protein (INCENP), C-terminal domain [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00012 Score=72.30 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=49.5
Q ss_pred CCCCcccchhhhccCCCCchhhhhhhhhhhcccccCCCCCcc---CCCCCCCCccccccchhhhhccC
Q 001530 994 SDNEEEEDDDDRLNTKFIPSWASKRASALIIPSLLSVSPEVI---FPPGSFCSISEVLLPRRQQQKMR 1058 (1059)
Q Consensus 994 sDdeDD~eDDe~Rr~K~IPSWASKnaLaqALlSQqrVDPDkI---F~~~~spdLSEIFlPrKpQr~~~ 1058 (1059)
+.++||+.||+..++|.+|+||+...+..++..|..--|..| |+-.-.++|.+||...++-..+|
T Consensus 49 dlnsDdstDdE~hpRkp~PtWar~~v~~eai~~qa~~pp~~v~~Ff~~~pkpdLkeIF~~~~p~~~KR 116 (134)
T KOG4456|consen 49 DLNSDDSTDDEKHPRKPFPTWARDMVIVEAIEEQAKNPPFNVNTFFGSMPKPDLKEIFGEMVPSKKKR 116 (134)
T ss_pred hcccccccccccCCCCCCchhhhhchHHHHHHHHhhCCchHHHHHhcccCCcCHHHHHHhhhhhhhhc
Confidence 336667778888999999999999999888887755434443 56556699999999988844444
No 16
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.033 Score=62.44 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=2.9
Q ss_pred HHhHHHHH
Q 001530 876 RRQQQEHE 883 (1059)
Q Consensus 876 RkkQaE~E 883 (1059)
++.++|.|
T Consensus 192 ~k~kaEaE 199 (387)
T COG3064 192 AKKKAEAE 199 (387)
T ss_pred HHHHHHHH
Confidence 33333333
No 17
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.032 Score=68.37 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=15.4
Q ss_pred ccccccccccCCCccCCCCCCCCCCCcccccCCCCCccc
Q 001530 507 CFDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIG 545 (1059)
Q Consensus 507 ~~~~~~n~~~~grs~sd~~~~s~~~~~~~~~~p~~sp~~ 545 (1059)
++.-.|||. ++|.-|.+--+ ..+||-+|-|
T Consensus 477 ~v~iriDH~------~~~v~FgsDl~---~s~~~~~~eg 506 (988)
T KOG2072|consen 477 DVSIRIDHE------SNSVSFGSDLF---LSKEEDEPEG 506 (988)
T ss_pred ceeEEeccc------cceeeeccccc---cccccccCCC
Confidence 345566663 56666654221 2256666655
No 18
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.67 E-value=0.033 Score=61.71 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=29.4
Q ss_pred hhHHHH-HHHHHHHhhhhc-cCCCccccccccccCCCCCcccccc
Q 001530 437 TTIERA-SVLEQLCKSACM-NTPLSHFFTTYKLHQAPNLCQSVPN 479 (1059)
Q Consensus 437 ~~~~~a-~~~e~lcks~~~-~tp~~h~~~~~k~~~~~~~~qsvpn 479 (1059)
|.+++. |-.|-+||..-+ --|....-.+.-|++.--+-||++|
T Consensus 7 tald~lgseaedf~kaq~lylkpia~ikisv~lpql~ipgksisn 51 (445)
T KOG2891|consen 7 TALDDLGSEAEDFCKAQGLYLKPIAKIKISVALPQLKIPGKSISN 51 (445)
T ss_pred hHHhhhhhHHHhhhhhcceeeccceeEEEEEecccccCCCcccch
Confidence 445554 666778887544 3466666667777777778888888
No 19
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.022 Score=69.38 Aligned_cols=6 Identities=33% Similarity=0.191 Sum_probs=2.3
Q ss_pred ccCCCC
Q 001530 1006 LNTKFI 1011 (1059)
Q Consensus 1006 Rr~K~I 1011 (1059)
+..|.+
T Consensus 437 a~~k~~ 442 (1064)
T KOG1144|consen 437 AAVKAI 442 (1064)
T ss_pred cccccc
Confidence 333444
No 20
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.53 E-value=0.05 Score=64.41 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001530 839 KEEEKKKKL 847 (1059)
Q Consensus 839 kEEERkKKE 847 (1059)
.|.+|++++
T Consensus 224 ~Eaerk~~~ 232 (591)
T KOG2412|consen 224 EEAERKRRA 232 (591)
T ss_pred hhhHHHHHH
Confidence 333333333
No 21
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.49 E-value=0.07 Score=62.98 Aligned_cols=25 Identities=44% Similarity=0.474 Sum_probs=17.4
Q ss_pred hhhchhh-HHHHHHHHHHHHHHHHHH
Q 001530 781 IITGKRD-VKVKALEAAEAAKRLAVE 805 (1059)
Q Consensus 781 qIdEKrE-vr~KalEAEEAaKReEEK 805 (1059)
-++.+++ ++.++++++++.++.+.+
T Consensus 193 ~~~~rk~m~D~KEreaeea~k~aq~~ 218 (489)
T PF05262_consen 193 GIDKRKDMVDIKEREAEEAAKRAQEA 218 (489)
T ss_pred ChhhhhhhHHHHHHHhHHHHHHHHHH
Confidence 4555666 778888888887776543
No 22
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=95.92 E-value=0.32 Score=57.64 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=6.2
Q ss_pred cceeecccccc
Q 001530 934 ATVVSTSDARE 944 (1059)
Q Consensus 934 as~VntADgrk 944 (1059)
.+.++++.++.
T Consensus 390 ~S~~~~Ir~r~ 400 (489)
T PF05262_consen 390 RSPVNGIRGRT 400 (489)
T ss_pred ccccceeccce
Confidence 45555566655
No 23
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.95 Score=56.32 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=6.1
Q ss_pred ccCccccccccccc
Q 001530 646 MPSSVKREPLADIT 659 (1059)
Q Consensus 646 ~~ss~~R~~L~DIt 659 (1059)
|||.-.|-.|..|+
T Consensus 512 ~~sE~ir~~L~~m~ 525 (988)
T KOG2072|consen 512 MPSEGIRSQLTAMA 525 (988)
T ss_pred CchHhHHHHHHHHH
Confidence 33443344444443
No 24
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.67 E-value=0.18 Score=60.15 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=23.5
Q ss_pred ecCCCCCCCCCCCCCcccCCCChhhHHHHHHHHHHHh
Q 001530 414 ETDNGHSGTAGEDINFDKLDLPKTTIERASVLEQLCK 450 (1059)
Q Consensus 414 q~d~~~~~~~~~~~~~~~~dlp~~~~~~a~~~e~lck 450 (1059)
--|-+.+.+.|+-.|-+-+-|-+..-++.++-| |++
T Consensus 294 KRepaEqpGDgertdcepvglepaveqssaase-lae 329 (940)
T KOG4661|consen 294 KREPAEQPGDGERTDCEPVGLEPAVEQSSAASE-LAE 329 (940)
T ss_pred hcCcccCCCCccccccccccccchhhhhhhhhh-hhh
Confidence 345556677788888888888776655544444 444
No 25
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=95.57 E-value=0.41 Score=53.41 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=8.3
Q ss_pred CCChhhHHHHHHHHHH
Q 001530 433 DLPKTTIERASVLEQL 448 (1059)
Q Consensus 433 dlp~~~~~~a~~~e~l 448 (1059)
.+|-.+|-+--++|+|
T Consensus 43 ~ipgksisnwdlmerl 58 (445)
T KOG2891|consen 43 KIPGKSISNWDLMERL 58 (445)
T ss_pred cCCCcccchHHHHHHH
Confidence 3444555555555555
No 26
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=95.44 E-value=0.61 Score=55.98 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=10.7
Q ss_pred hhhccchhhhhh-cCC
Q 001530 88 LVKMDHLEKVVT-EGS 102 (1059)
Q Consensus 88 ~~~~~~~~~~~~-~~~ 102 (1059)
-|-|..|+|.|. ||-
T Consensus 54 sVLmERLkKal~~EG~ 69 (940)
T KOG4661|consen 54 SVLMERLKKALRAEGL 69 (940)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 466899999875 443
No 27
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=93.37 E-value=0.74 Score=53.93 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=16.9
Q ss_pred ccccCccccccccchhhhhhhhHhhhhhchhh
Q 001530 756 ESKHNNIVSNITSFIPLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 756 ~~K~~Nivs~i~Sfi~lvQqKQK~AqIdEKrE 787 (1059)
-|=.+|+.+.+-++|=.+.=..+..+-++-++
T Consensus 254 YWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~ 285 (429)
T PRK00247 254 YWVANNLWTLIQNIIMYLILERKYPLTDEFKE 285 (429)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 34457777776665544333344444444444
No 28
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=93.27 E-value=4.3 Score=42.00 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001530 853 RKRQREEEERKEKERK 868 (1059)
Q Consensus 853 RKRqeEEekRKEeErK 868 (1059)
.++.-||..+|.+++.
T Consensus 88 n~rkvEEAQrk~aeEr 103 (149)
T PF15346_consen 88 NRRKVEEAQRKLAEER 103 (149)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 29
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=92.72 E-value=15 Score=41.48 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.3
Q ss_pred cccccC
Q 001530 731 HNRFTK 736 (1059)
Q Consensus 731 ~~RfsK 736 (1059)
.+.|--
T Consensus 26 ~~~FDP 31 (276)
T PF12037_consen 26 ASGFDP 31 (276)
T ss_pred cCCCCc
Confidence 334433
No 30
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=92.67 E-value=0.5 Score=55.98 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=7.2
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 001530 825 EQENLKQLELQKKKKEEEK 843 (1059)
Q Consensus 825 EEEEkRk~EeeRRKkEEER 843 (1059)
|.|.+.++|+.+|+.||+|
T Consensus 415 eae~e~kreearrkaeeer 433 (708)
T KOG3654|consen 415 EAEKEQKREEARRKAEEER 433 (708)
T ss_pred HHHHHHHHHHHHHhhHhhh
Confidence 3333333334433333333
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.22 E-value=0.33 Score=60.92 Aligned_cols=16 Identities=38% Similarity=0.328 Sum_probs=10.8
Q ss_pred cccCCCCCcccccchh
Q 001530 466 KLHQAPNLCQSVPNRL 481 (1059)
Q Consensus 466 k~~~~~~~~qsvpn~l 481 (1059)
-|-.++++.|+-||.+
T Consensus 552 ~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNAR 567 (1018)
T ss_pred HHHHHHhcccCCcHHH
Confidence 3456777888888753
No 32
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=92.17 E-value=9.3 Score=39.89 Aligned_cols=7 Identities=29% Similarity=0.174 Sum_probs=2.8
Q ss_pred Hhhhhhc
Q 001530 778 AAAIITG 784 (1059)
Q Consensus 778 K~AqIdE 784 (1059)
.++++.+
T Consensus 42 Dpa~~eE 48 (157)
T PF15236_consen 42 DPAQIEE 48 (157)
T ss_pred CHHHHHH
Confidence 3444433
No 33
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=91.94 E-value=0.68 Score=54.96 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001530 853 RKRQREEEERKEKERKR 869 (1059)
Q Consensus 853 RKRqeEEekRKEeErKR 869 (1059)
++..+||+.+||+|..|
T Consensus 426 rrkaeeer~~keee~ar 442 (708)
T KOG3654|consen 426 RRKAEEERAPKEEEVAR 442 (708)
T ss_pred HHhhHhhhcchhhhhhH
Confidence 44444455555555543
No 34
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=91.89 E-value=6.4 Score=40.78 Aligned_cols=19 Identities=42% Similarity=0.414 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001530 856 QREEEERKEKERKRKRVME 874 (1059)
Q Consensus 856 qeEEekRKEeErKRKr~EE 874 (1059)
..++..++.+|.++|..+|
T Consensus 84 ileen~rkvEEAQrk~aeE 102 (149)
T PF15346_consen 84 ILEENRRKVEEAQRKLAEE 102 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444
No 35
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=14 Score=44.24 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.2
Q ss_pred chhhhh
Q 001530 769 FIPLVQ 774 (1059)
Q Consensus 769 fi~lvQ 774 (1059)
++.+.+
T Consensus 97 vfel~r 102 (630)
T KOG0742|consen 97 VFELAR 102 (630)
T ss_pred HHHHHH
Confidence 333333
No 36
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=90.81 E-value=1 Score=53.61 Aligned_cols=10 Identities=50% Similarity=0.451 Sum_probs=6.8
Q ss_pred eeeccccccc
Q 001530 936 VVSTSDARET 945 (1059)
Q Consensus 936 ~VntADgrka 945 (1059)
+|+-+|++..
T Consensus 382 ~vskid~rle 391 (492)
T PF02029_consen 382 VVSKIDDRLE 391 (492)
T ss_pred ccccchhhHH
Confidence 6667777763
No 37
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=2.9 Score=46.88 Aligned_cols=7 Identities=0% Similarity=0.008 Sum_probs=2.9
Q ss_pred hhhhhhh
Q 001530 906 KDETWRD 912 (1059)
Q Consensus 906 ~keakee 912 (1059)
+|+++.+
T Consensus 172 eRka~~e 178 (290)
T KOG2689|consen 172 ERKAKYE 178 (290)
T ss_pred HHHHHhc
Confidence 3444443
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.36 E-value=18 Score=43.53 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=18.7
Q ss_pred cCcccccccCcccceee-cccccccchh
Q 001530 922 ENPAKMKKTESKATVVS-TSDARETSIV 948 (1059)
Q Consensus 922 Nnl~k~P~TES~as~Vn-tADgrkas~v 948 (1059)
.++..+-.++...|+|. .+|.+|+-+|
T Consensus 193 qr~a~~~~~e~~~~~v~lp~d~~kgrii 220 (514)
T TIGR03319 193 QRYAGDHVAETTVSVVNLPNDEMKGRII 220 (514)
T ss_pred HhccchhhhhheeeeEEcCChhhhcccc
Confidence 35556667777778888 4778887654
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=90.23 E-value=18 Score=43.51 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=18.4
Q ss_pred CcccccccCcccceee-cccccccchhh
Q 001530 923 NPAKMKKTESKATVVS-TSDARETSIVL 949 (1059)
Q Consensus 923 nl~k~P~TES~as~Vn-tADgrkas~v~ 949 (1059)
++..+-.++...|+|+ .+|.+|+-+|-
T Consensus 200 r~a~~~~~e~~~~~v~lp~d~mkgriig 227 (520)
T PRK12704 200 RCAADHVAETTVSVVNLPNDEMKGRIIG 227 (520)
T ss_pred hhcchhhhhhceeeeecCCchhhcceeC
Confidence 5556666777777888 57788876543
No 40
>PRK12705 hypothetical protein; Provisional
Probab=89.95 E-value=21 Score=43.09 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=18.2
Q ss_pred cCcccccccCcccceee-cccccccchh
Q 001530 922 ENPAKMKKTESKATVVS-TSDARETSIV 948 (1059)
Q Consensus 922 Nnl~k~P~TES~as~Vn-tADgrkas~v 948 (1059)
.++..+-.++...|+|+ .+|.+++-+|
T Consensus 187 qr~a~~~~~e~tvs~v~lp~demkGriI 214 (508)
T PRK12705 187 QRIASETASDLSVSVVPIPSDAMKGRII 214 (508)
T ss_pred HHhccchhhhheeeeeecCChHhhcccc
Confidence 45556666777777777 4777777654
No 41
>PRK00106 hypothetical protein; Provisional
Probab=88.69 E-value=31 Score=42.01 Aligned_cols=27 Identities=26% Similarity=0.134 Sum_probs=18.1
Q ss_pred CcccccccCcccceee-cccccccchhh
Q 001530 923 NPAKMKKTESKATVVS-TSDARETSIVL 949 (1059)
Q Consensus 923 nl~k~P~TES~as~Vn-tADgrkas~v~ 949 (1059)
++..+-.++...|+|+ .+|.+++-+|-
T Consensus 215 r~a~~~~~e~tvs~v~lp~demkGriIG 242 (535)
T PRK00106 215 RLAGEYVTEQTITTVHLPDDNMKGRIIG 242 (535)
T ss_pred HhcchhhhhheeeeEEcCChHhhcceeC
Confidence 5556666777777787 47777766543
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.37 E-value=16 Score=46.98 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q 001530 442 ASVLEQLC 449 (1059)
Q Consensus 442 a~~~e~lc 449 (1059)
|-.+|.||
T Consensus 503 arl~E~l~ 510 (1018)
T KOG2002|consen 503 ARLLEELH 510 (1018)
T ss_pred HHHHHhhh
Confidence 45556655
No 43
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=87.67 E-value=3 Score=47.77 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=9.0
Q ss_pred CcccCccccccccc
Q 001530 962 SKATGHLEKATEND 975 (1059)
Q Consensus 962 ~Kv~~~L~~~~End 975 (1059)
-|.+.+.+++.+++
T Consensus 221 Rkk~~~~~~~~e~~ 234 (361)
T KOG3634|consen 221 RKKPLNISELPEND 234 (361)
T ss_pred HhcccccccCCHHH
Confidence 35566677777666
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.49 E-value=20 Score=44.86 Aligned_cols=10 Identities=20% Similarity=-0.121 Sum_probs=4.2
Q ss_pred CCccccccee
Q 001530 403 QIMPEFEGFI 412 (1059)
Q Consensus 403 ~~~p~~egf~ 412 (1059)
+-+-|.=||.
T Consensus 160 gypvv~~g~~ 169 (697)
T PF09726_consen 160 GYPVVTLGFG 169 (697)
T ss_pred CCceeEeecc
Confidence 3344444443
No 45
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=86.91 E-value=2 Score=48.09 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=9.5
Q ss_pred CCCCCCCcccccccccc
Q 001530 616 SLNPELPFISEEDENTD 632 (1059)
Q Consensus 616 ~~~~~l~~IsEEnE~~~ 632 (1059)
.|-..+-+.||=+|=.+
T Consensus 158 ~Lp~~~~vmsEs~e~~~ 174 (321)
T PF07946_consen 158 KLPESLVVMSESNEVTD 174 (321)
T ss_pred CCCcceEEEEccHhHHH
Confidence 44445556776665544
No 46
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=85.86 E-value=3.4 Score=46.41 Aligned_cols=14 Identities=7% Similarity=0.007 Sum_probs=6.4
Q ss_pred CCcccccccccccC
Q 001530 541 GSPIGKFWDRITSN 554 (1059)
Q Consensus 541 ~sp~~k~w~~~~~~ 554 (1059)
--|+.-||+.|.+.
T Consensus 92 qdl~~~l~~~i~~~ 105 (321)
T PF07946_consen 92 QDLFSWLFEFILPF 105 (321)
T ss_pred cCHHHHHHHHHHhh
Confidence 33444445544443
No 47
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=48 Score=40.00 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001530 848 ADMAARKR 855 (1059)
Q Consensus 848 aE~eeRKR 855 (1059)
.+-+.+++
T Consensus 166 ~e~e~qr~ 173 (630)
T KOG0742|consen 166 DELEAQRR 173 (630)
T ss_pred HHHHHHHH
Confidence 33333333
No 48
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.19 E-value=6.2 Score=46.41 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=16.9
Q ss_pred CCCCCCCCcCCCCCCCCcccccccccc
Q 001530 606 SNSSSSDKQGSLNPELPFISEEDENTD 632 (1059)
Q Consensus 606 s~s~~~~~~~~~~~~l~~IsEEnE~~~ 632 (1059)
|-..+++-|-.|--++..+||=||-.+
T Consensus 252 si~~~p~~~~~lP~~~~vmSE~nEvs~ 278 (440)
T KOG2357|consen 252 SIVSSPEGRYNLPESFVVMSESNEVSG 278 (440)
T ss_pred ccCCCcccccCCCcceeeeecchhhhh
Confidence 444455555556666788888777544
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.93 E-value=82 Score=39.65 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=3.2
Q ss_pred cccccch
Q 001530 474 CQSVPNR 480 (1059)
Q Consensus 474 ~qsvpn~ 480 (1059)
+|+||.+
T Consensus 198 ~~~lp~~ 204 (697)
T PF09726_consen 198 QQALPPE 204 (697)
T ss_pred HHhCCCc
Confidence 3444444
No 50
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=75.22 E-value=1.1e+02 Score=31.91 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=9.1
Q ss_pred hhhhhhhHhhhhhchhh
Q 001530 771 PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 771 ~lvQqKQK~AqIdEKrE 787 (1059)
..|-|++=...++++.+
T Consensus 22 ~kfawkPI~~~LeeR~~ 38 (154)
T PRK06568 22 YRPAKKAILNSLDAKIL 38 (154)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33445555555666555
No 51
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=72.73 E-value=93 Score=33.45 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=11.7
Q ss_pred ccccccCccccccccchhh
Q 001530 754 DRESKHNNIVSNITSFIPL 772 (1059)
Q Consensus 754 ~~~~K~~Nivs~i~Sfi~l 772 (1059)
+...=++||+-.++.|+=+
T Consensus 48 ~~~~~~~~l~w~~I~FliL 66 (204)
T PRK09174 48 DSTHYASQLLWLAITFGLF 66 (204)
T ss_pred cchhccHHHHHHHHHHHHH
Confidence 3333457888887876543
No 52
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=71.65 E-value=2.2e+02 Score=37.36 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=12.1
Q ss_pred ccccccc-ccccccccccccccchhh
Q 001530 220 WPQHKRR-KVEGHLNDYLSASASMRE 244 (1059)
Q Consensus 220 ~pqhkrr-ki~g~~~~~~sas~~~~~ 244 (1059)
-|||++| +.++++....+-|+.+-+
T Consensus 473 ~~~~~~~~~~~e~~~~s~~~~~~~~d 498 (1189)
T KOG1265|consen 473 SDQFRSRKKLGEEAEGSSSPSAEAED 498 (1189)
T ss_pred ccccccccccCcccccCCCCcccccC
Confidence 4454433 455555555554444433
No 53
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.22 E-value=16 Score=43.12 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=9.2
Q ss_pred cccchhhhhhhhHhhh
Q 001530 766 ITSFIPLVQQKQAAAI 781 (1059)
Q Consensus 766 i~Sfi~lvQqKQK~Aq 781 (1059)
|..|++++.++-+.-.
T Consensus 344 i~~li~ylid~~~~~~ 359 (440)
T KOG2357|consen 344 ILNLIFYLIDKAKKLF 359 (440)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3347777777555433
No 54
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=67.24 E-value=1.9e+02 Score=31.45 Aligned_cols=18 Identities=0% Similarity=0.054 Sum_probs=9.3
Q ss_pred hhhhhhhhHhhhhhchhh
Q 001530 770 IPLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 770 i~lvQqKQK~AqIdEKrE 787 (1059)
+..|=+++=...++++++
T Consensus 22 L~kfl~kPi~~~l~~R~~ 39 (246)
T TIGR03321 22 LKRFLYRPILDAMDAREK 39 (246)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 344445454555666655
No 55
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.87 E-value=2.3e+02 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=8.9
Q ss_pred ccccccccccccCC
Q 001530 505 YSCFDEEADHAYQG 518 (1059)
Q Consensus 505 ~~~~~~~~n~~~~g 518 (1059)
-+-|++.+|-.||-
T Consensus 536 ~s~~~~~v~~~~~k 549 (1187)
T KOG0579|consen 536 ASSFDESVNLSFHK 549 (1187)
T ss_pred ccccchhhhhhhhh
Confidence 34567777766664
No 56
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=65.05 E-value=1.7e+02 Score=30.16 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.4
Q ss_pred hhhHhhhhhchhh
Q 001530 775 QKQAAAIITGKRD 787 (1059)
Q Consensus 775 qKQK~AqIdEKrE 787 (1059)
.+.=...++.+++
T Consensus 41 ~kpI~~~l~~R~~ 53 (174)
T PRK07352 41 RGFLGKILEERRE 53 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444444
No 57
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=64.72 E-value=2.3e+02 Score=31.35 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=8.8
Q ss_pred hhhhhhhhHhhhhhchhh
Q 001530 770 IPLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 770 i~lvQqKQK~AqIdEKrE 787 (1059)
+..|=.+.=...++++++
T Consensus 22 L~~fl~kPi~~~l~eR~~ 39 (250)
T PRK14474 22 LRRFLYKPIIQVMKKRQQ 39 (250)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444445555555
No 58
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.18 E-value=3.3e+02 Score=32.97 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.6
Q ss_pred ccccccccc
Q 001530 544 IGKFWDRIT 552 (1059)
Q Consensus 544 ~~k~w~~~~ 552 (1059)
+.+.++.++
T Consensus 62 ~~~~~~~~~ 70 (582)
T PF09731_consen 62 FPSMVSSVP 70 (582)
T ss_pred Ccccccccc
Confidence 334444443
No 59
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.37 E-value=1.5e+02 Score=37.71 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=6.2
Q ss_pred cccccccccccceee
Q 001530 363 LSFDEIGMQEGKCHL 377 (1059)
Q Consensus 363 l~~~e~~m~~~~~~~ 377 (1059)
|.+...++..++|++
T Consensus 184 L~d~~it~r~~r~~i 198 (782)
T PRK00409 184 LQDTIITIRNDRYVL 198 (782)
T ss_pred cccceEEEECCEEEE
Confidence 333334444444443
No 60
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=62.84 E-value=1.9e+02 Score=34.43 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=10.8
Q ss_pred chhhhhhhhHhhhhhchhh
Q 001530 769 FIPLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 769 fi~lvQqKQK~AqIdEKrE 787 (1059)
++..|-++.=...++++++
T Consensus 17 lL~kfl~~Pi~~~l~~R~~ 35 (445)
T PRK13428 17 LVWRFVVPPVRRLMAARQD 35 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666
No 61
>PLN02316 synthase/transferase
Probab=60.79 E-value=22 Score=46.28 Aligned_cols=11 Identities=0% Similarity=-0.167 Sum_probs=4.6
Q ss_pred cccccccCCCC
Q 001530 708 NRRQAKMSHGP 718 (1059)
Q Consensus 708 rr~t~K~KeNq 718 (1059)
++.++..-+|-
T Consensus 127 ~~~~~~~~~~~ 137 (1036)
T PLN02316 127 REIEELAEENF 137 (1036)
T ss_pred HHHHHHHhhcc
Confidence 34444444443
No 62
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=59.23 E-value=2.3e+02 Score=29.67 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=7.7
Q ss_pred ccCccccccccchh
Q 001530 758 KHNNIVSNITSFIP 771 (1059)
Q Consensus 758 K~~Nivs~i~Sfi~ 771 (1059)
=+++++..+..|+=
T Consensus 30 ~~~q~~~~lI~F~i 43 (181)
T PRK13454 30 FPNQIFWLLVTLVA 43 (181)
T ss_pred cchHHHHHHHHHHH
Confidence 34566666665443
No 63
>PTZ00491 major vault protein; Provisional
Probab=58.20 E-value=2.8e+02 Score=36.02 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=32.2
Q ss_pred cchhhhcccccccccCcch-----hhhcccCccccccccCCCCCcccccccccccchhhhccchhhhhh
Q 001530 36 NSTSLERGLGSYMVGSLPQ-----LKQRKVGSRTNVVSAAPSLRDDDVVQSNEDRSALVKMDHLEKVVT 99 (1059)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1059)
|.|.|+-|-=.|....--. .+---|-.|.-++-.-|-+||.|-.-- -|.+--||..|=+.-+.
T Consensus 23 nvt~~~~GP~t~~~~dhe~~~~~p~~~vvvPp~hYC~V~NP~~r~~~g~~v-~d~~gq~klr~G~~EiR 90 (850)
T PTZ00491 23 NVTRLIVGPQTFTRQDHERVLHPPQPMVVVPPRHYCIVENPHVRDPDGSPV-KDAYGQVKVRHGEREIR 90 (850)
T ss_pred CeEEEEECCeEEEeccccccccCCceeEEcCCCceEEEeCCeeeCCCCCee-eccCCcEEeccccEEEE
Confidence 5566666666665543211 122234445556667788887653111 35555556555444333
No 64
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=57.98 E-value=1.3e+02 Score=37.85 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=4.7
Q ss_pred hhhhcccccccC
Q 001530 480 RLLECIDLRNNP 491 (1059)
Q Consensus 480 ~llegm~~~~~l 491 (1059)
|-|..+-+-+-+
T Consensus 85 ~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 85 GDLRASRLLTEL 96 (668)
T ss_pred HHHHHHHHhccc
Confidence 334444443333
No 65
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=55.06 E-value=3e+02 Score=29.61 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=5.9
Q ss_pred hhhHhhhhhchhh
Q 001530 775 QKQAAAIITGKRD 787 (1059)
Q Consensus 775 qKQK~AqIdEKrE 787 (1059)
+++=...++.+++
T Consensus 70 ~kPi~~~L~~R~~ 82 (205)
T PRK06231 70 WKPTQRFLNKRKE 82 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334555555
No 66
>PRK12705 hypothetical protein; Provisional
Probab=53.38 E-value=5.2e+02 Score=31.87 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.3
Q ss_pred hhhhhh
Q 001530 772 LVQQKQ 777 (1059)
Q Consensus 772 lvQqKQ 777 (1059)
++++++
T Consensus 24 ~~~~~~ 29 (508)
T PRK12705 24 LLKKRQ 29 (508)
T ss_pred HHHHHH
Confidence 334433
No 67
>PRK12472 hypothetical protein; Provisional
Probab=52.75 E-value=4.1e+02 Score=32.78 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=3.4
Q ss_pred ccCCCcc
Q 001530 734 FTKPKLS 740 (1059)
Q Consensus 734 fsKPrL~ 740 (1059)
|.+|.|+
T Consensus 172 ~~~~~l~ 178 (508)
T PRK12472 172 ISHPALF 178 (508)
T ss_pred cCCcccC
Confidence 4445544
No 68
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=52.21 E-value=3e+02 Score=28.73 Aligned_cols=18 Identities=0% Similarity=0.189 Sum_probs=9.5
Q ss_pred hhhhhhhhHhhhhhchhh
Q 001530 770 IPLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 770 i~lvQqKQK~AqIdEKrE 787 (1059)
|.+|=++.=...++++++
T Consensus 41 L~~fl~kPI~~~l~~R~~ 58 (184)
T CHL00019 41 LIYFGKGVLSDLLDNRKQ 58 (184)
T ss_pred HHHHhHhHHHHHHHHHHH
Confidence 344444555555666655
No 69
>PRK12472 hypothetical protein; Provisional
Probab=51.82 E-value=2.5e+02 Score=34.53 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=8.6
Q ss_pred ccccCcccceeeccccc
Q 001530 927 MKKTESKATVVSTSDAR 943 (1059)
Q Consensus 927 ~P~TES~as~VntADgr 943 (1059)
+-.++++...++-+..+
T Consensus 317 ~l~~~pvsi~isr~tq~ 333 (508)
T PRK12472 317 KLALEPVSIYISRATQK 333 (508)
T ss_pred HhhcCCeEEEEEcccce
Confidence 33445565566554443
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.82 E-value=5.6e+02 Score=31.19 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=3.3
Q ss_pred cccccCc
Q 001530 926 KMKKTES 932 (1059)
Q Consensus 926 k~P~TES 932 (1059)
.+|+|+.
T Consensus 149 a~~~~~~ 155 (459)
T KOG0288|consen 149 AVPRTED 155 (459)
T ss_pred CCccccC
Confidence 3455544
No 71
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=49.80 E-value=54 Score=39.39 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=12.4
Q ss_pred CCCCCcccccchhhhcccc
Q 001530 469 QAPNLCQSVPNRLLECIDL 487 (1059)
Q Consensus 469 ~~~~~~qsvpn~llegm~~ 487 (1059)
...+.-|++|+++-.+-.+
T Consensus 33 ~~~~~~~~~~~~~~~~r~~ 51 (460)
T KOG1363|consen 33 DDEDANQEAPPPLRPRRTI 51 (460)
T ss_pred ccccccCCCCCccCCcccc
Confidence 4456667777777766555
No 72
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=49.38 E-value=3.9e+02 Score=29.22 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=8.5
Q ss_pred cccccccchhhhhhhhHhhh
Q 001530 762 IVSNITSFIPLVQQKQAAAI 781 (1059)
Q Consensus 762 ivs~i~Sfi~lvQqKQK~Aq 781 (1059)
++-+++.|+=++===.++.+
T Consensus 8 ~~~qiInFlil~~lL~kfl~ 27 (246)
T TIGR03321 8 VIAQLINFLILVWLLKRFLY 27 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 44444454444433334443
No 73
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=49.24 E-value=3.2e+02 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=15.1
Q ss_pred Cccccccccch------hhhhhhhHhhhhhchhh
Q 001530 760 NNIVSNITSFI------PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 760 ~Nivs~i~Sfi------~lvQqKQK~AqIdEKrE 787 (1059)
.||+-+++.|+ ..|=+++=...++++++
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~ 56 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRIN 56 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56766666643 33444444445555555
No 74
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=47.33 E-value=3.3e+02 Score=27.78 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=3.9
Q ss_pred ccccccccch
Q 001530 761 NIVSNITSFI 770 (1059)
Q Consensus 761 Nivs~i~Sfi 770 (1059)
+++-.+..|+
T Consensus 24 t~~~~~inFl 33 (156)
T CHL00118 24 TLPLMALQFL 33 (156)
T ss_pred HHHHHHHHHH
Confidence 3333334443
No 75
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=46.93 E-value=1.4e+02 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=10.0
Q ss_pred ccccchhhhccccCccc
Q 001530 252 VNKSLVCEMDQNGHHNM 268 (1059)
Q Consensus 252 ~~ks~~~e~~qn~~~~m 268 (1059)
-+-+||+---+|.+|-|
T Consensus 163 ~tp~pv~~~p~~necKm 179 (641)
T KOG3915|consen 163 STPSPVENTPQNNECKM 179 (641)
T ss_pred CCCCcccCCCcccceee
Confidence 34456655566777763
No 76
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=46.84 E-value=3.8e+02 Score=32.18 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 001530 875 SRRQQQEHEEKLRAKKEEERKKKE 898 (1059)
Q Consensus 875 eRkkQaE~EeK~ReeeEeErK~KE 898 (1059)
.|..+...|||..-.+|+|.-.|+
T Consensus 341 ~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 341 ARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444443333
No 77
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=46.46 E-value=4.5e+02 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=9.7
Q ss_pred cccccccchhhhhhhhHhhhhh
Q 001530 762 IVSNITSFIPLVQQKQAAAIIT 783 (1059)
Q Consensus 762 ivs~i~Sfi~lvQqKQK~AqId 783 (1059)
++-+++.|+=+|===.+|.+-.
T Consensus 8 ~~~qiInFlILv~lL~~fl~kP 29 (250)
T PRK14474 8 VVAQIINFLILVYLLRRFLYKP 29 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544443333444433
No 78
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=45.91 E-value=98 Score=37.31 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.5
Q ss_pred cccccc
Q 001530 671 TDVFAA 676 (1059)
Q Consensus 671 adI~~D 676 (1059)
.++|.+
T Consensus 148 ~~~f~~ 153 (460)
T KOG1363|consen 148 VDNFGD 153 (460)
T ss_pred HHHHHH
Confidence 344444
No 79
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=45.50 E-value=8.9e+02 Score=32.30 Aligned_cols=8 Identities=25% Similarity=-0.056 Sum_probs=3.4
Q ss_pred cccccccc
Q 001530 149 SSIAGSTG 156 (1059)
Q Consensus 149 ~~~~~~~~ 156 (1059)
--.||.+-
T Consensus 373 vITHG~tm 380 (1189)
T KOG1265|consen 373 VITHGFTM 380 (1189)
T ss_pred eeecccch
Confidence 33444443
No 80
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=44.41 E-value=1.1e+03 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=14.5
Q ss_pred cccccccCCCChhhhhhcccccccccccc
Q 001530 484 CIDLRNNPSLNDNIVKQLKASYSCFDEEA 512 (1059)
Q Consensus 484 gm~~~~~l~~n~~~~k~l~~s~~~~~~~~ 512 (1059)
|++|..++.|....+ |-.+|+|++.
T Consensus 507 G~Dlq~~idLIEkp~----Gi~slLdEEc 531 (1930)
T KOG0161|consen 507 GLDLQPTIDLIEKPM----GILSLLDEEC 531 (1930)
T ss_pred ccchhhhHHHHhchh----hHHHHHHHHH
Confidence 677777765554433 5555555554
No 81
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=41.11 E-value=4.2e+02 Score=27.29 Aligned_cols=8 Identities=0% Similarity=0.003 Sum_probs=3.9
Q ss_pred hhhhchhh
Q 001530 780 AIITGKRD 787 (1059)
Q Consensus 780 AqIdEKrE 787 (1059)
..++++++
T Consensus 37 ~~le~R~~ 44 (167)
T PRK14475 37 GALDAYAA 44 (167)
T ss_pred HHHHHHHH
Confidence 34555555
No 82
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.32 E-value=4.4e+02 Score=27.26 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=12.9
Q ss_pred Cccccccccch------hhhhhhhHhhhhhchhh
Q 001530 760 NNIVSNITSFI------PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 760 ~Nivs~i~Sfi------~lvQqKQK~AqIdEKrE 787 (1059)
+.++-.++.|+ ..|=+++=...++++++
T Consensus 17 ~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~ 50 (173)
T PRK13460 17 GLVVWTLVTFLVVVLVLKKFAWDVILKALDERAS 50 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555543 33334333344555544
No 83
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.91 E-value=4.7e+02 Score=27.23 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=4.6
Q ss_pred cCccccccc
Q 001530 759 HNNIVSNIT 767 (1059)
Q Consensus 759 ~~Nivs~i~ 767 (1059)
..+++..|.
T Consensus 27 ~t~~~~~in 35 (184)
T PRK13455 27 NTDFVVTLA 35 (184)
T ss_pred chHHHHHHH
Confidence 456655433
No 84
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=36.83 E-value=1.3e+03 Score=33.11 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=18.6
Q ss_pred cccccCCCccCCcccccCCCCcccc--ccccCcccccc
Q 001530 731 HNRFTKPKLSEKPSLRKGGPSFADR--ESKHNNIVSNI 766 (1059)
Q Consensus 731 ~~RfsKPrL~G~ksLrk~~~~~~~~--~~K~~Nivs~i 766 (1059)
.||+..+++| .+.|..+.++. --+.+.|+..+
T Consensus 746 lyriG~tKvF----fkaGvla~LEe~Rd~~ls~ii~~f 779 (1930)
T KOG0161|consen 746 LYRIGHTKVF----FKAGVLAHLEEMRDEKLSQIITLF 779 (1930)
T ss_pred eEeecceeee----ehHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777 67777765543 23444444433
No 85
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.07 E-value=4.9e+02 Score=26.54 Aligned_cols=29 Identities=3% Similarity=0.208 Sum_probs=14.6
Q ss_pred cCccccccccchh------hhhhhhHhhhhhchhh
Q 001530 759 HNNIVSNITSFIP------LVQQKQAAAIITGKRD 787 (1059)
Q Consensus 759 ~~Nivs~i~Sfi~------lvQqKQK~AqIdEKrE 787 (1059)
+++++-++..|+= .|=+++=...++++++
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~ 42 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTR 42 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666543 3334444444555555
No 86
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=35.03 E-value=1.8e+02 Score=34.87 Aligned_cols=10 Identities=10% Similarity=-0.121 Sum_probs=5.3
Q ss_pred CCCCcccccc
Q 001530 1040 SFCSISEVLL 1049 (1059)
Q Consensus 1040 ~spdLSEIFl 1049 (1059)
+.++|++++.
T Consensus 494 fg~~l~~~~~ 503 (506)
T KOG2441|consen 494 FGLDLSDLKK 503 (506)
T ss_pred cccchHhhhh
Confidence 4445666554
No 87
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=34.41 E-value=4.1e+02 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCCCCCcccchhhhccCCCCchhhhhhhhhhhc
Q 001530 992 KDSDNEEEEDDDDRLNTKFIPSWASKRASALII 1024 (1059)
Q Consensus 992 k~sDdeDD~eDDe~Rr~K~IPSWASKnaLaqAL 1024 (1059)
+|-++-|.++ ..+-+.|+...++...+
T Consensus 231 KythL~~eDT------t~~~~~w~~~~~~~~~~ 257 (276)
T PF06991_consen 231 KYTHLVDEDT------TRFDSPWSQESAQNAKF 257 (276)
T ss_pred cccccccccc------cccCCcccccchHHHHH
Confidence 3566655443 22456888877765555
No 88
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.31 E-value=1.4e+03 Score=31.48 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=8.3
Q ss_pred ccchhhhccchhhhhh
Q 001530 84 DRSALVKMDHLEKVVT 99 (1059)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (1059)
|-|+-|....|+..+.
T Consensus 5 d~s~~~R~~~L~~l~~ 20 (1317)
T KOG0612|consen 5 DMSAEVRLRKLENLIL 20 (1317)
T ss_pred CccHHHHHHHHHHHhc
Confidence 3445555555555543
No 89
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.03 E-value=6.1e+02 Score=28.15 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=2.9
Q ss_pred HHhHHHH
Q 001530 876 RRQQQEH 882 (1059)
Q Consensus 876 RkkQaE~ 882 (1059)
+++|++.
T Consensus 156 ~k~qae~ 162 (227)
T KOG4691|consen 156 WKQQAER 162 (227)
T ss_pred HHHHHHH
Confidence 4444333
No 90
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=32.88 E-value=2e+02 Score=34.51 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=5.0
Q ss_pred cccCCCCCCCC
Q 001530 559 EKRGGSNPDLP 569 (1059)
Q Consensus 559 ~kr~~~~p~lp 569 (1059)
++|-+..|-||
T Consensus 43 g~Rkg~~pr~p 53 (506)
T KOG2441|consen 43 GYRKGWRPRLP 53 (506)
T ss_pred ccccCcccCCh
Confidence 34444444443
No 91
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=32.16 E-value=1.5e+03 Score=31.06 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=5.0
Q ss_pred cccccCCCcc
Q 001530 731 HNRFTKPKLS 740 (1059)
Q Consensus 731 ~~RfsKPrL~ 740 (1059)
.-.+.+|.|+
T Consensus 189 l~~lr~P~Ls 198 (1353)
T TIGR02680 189 LIQLRQPQLS 198 (1353)
T ss_pred HHHHcCCCCC
Confidence 3344555555
No 92
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=7.8e+02 Score=27.39 Aligned_cols=11 Identities=9% Similarity=-0.160 Sum_probs=5.0
Q ss_pred hhhhhhhcccc
Q 001530 908 ETWRDYKRVKD 918 (1059)
Q Consensus 908 eakee~k~~k~ 918 (1059)
+++=++.++++
T Consensus 181 ea~Ie~AL~~p 191 (227)
T KOG4691|consen 181 EARIEAALDSP 191 (227)
T ss_pred HHHHHHHHcCc
Confidence 34444445554
No 93
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=30.64 E-value=1.1e+02 Score=37.23 Aligned_cols=9 Identities=44% Similarity=0.364 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 001530 794 EAAEAAKRL 802 (1059)
Q Consensus 794 EAEEAaKRe 802 (1059)
.++||+|..
T Consensus 227 saeEa~kHr 235 (586)
T KOG2223|consen 227 SAEEAKKHR 235 (586)
T ss_pred cHHHHHHHH
Confidence 444554443
No 94
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=30.16 E-value=4.9e+02 Score=32.73 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=24.8
Q ss_pred cccccCCCCCccccccc-------ccccCCCCccccCCCCCCCCcccccccc
Q 001530 533 ASEIRKPFGSPIGKFWD-------RITSNSASSEKRGGSNPDLPCISEENEN 577 (1059)
Q Consensus 533 ~~~~~~p~~sp~~k~w~-------~~~~~s~~s~kr~~~~p~lpci~eene~ 577 (1059)
-|-.|-||-++|=.=|+ -|..+.|-.+.- |+.-=|++|=--|
T Consensus 79 Rs~~rSPFd~nVvtNwel~E~ilDY~F~~LG~~~~~---idhPIilTE~laN 127 (645)
T KOG0681|consen 79 RSSPRSPFDRNVVTNWELMEQILDYIFGKLGVDGQG---IDHPIILTEALAN 127 (645)
T ss_pred hccCCCCCcCCccccHHHHHHHHHHHHHhcCCCccC---CCCCeeeehhccC
Confidence 36678888888888775 355555544321 4444455554333
No 95
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=29.40 E-value=6.6e+02 Score=26.08 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=6.9
Q ss_pred cCccccccccchh
Q 001530 759 HNNIVSNITSFIP 771 (1059)
Q Consensus 759 ~~Nivs~i~Sfi~ 771 (1059)
+.+++-.++.|+=
T Consensus 18 ~~t~~~~iInFli 30 (173)
T PRK13453 18 WGTVIVTVLTFIV 30 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3456655555543
No 96
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=28.62 E-value=1.5e+03 Score=29.78 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001530 814 KEALKLERAKLEQE 827 (1059)
Q Consensus 814 KEAreeEraRkEEE 827 (1059)
+...+..++++.++
T Consensus 174 e~naeL~rarqree 187 (916)
T KOG0249|consen 174 ELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 97
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.99 E-value=7e+02 Score=25.90 Aligned_cols=17 Identities=0% Similarity=-0.025 Sum_probs=7.6
Q ss_pred hhhhhhhHhhhhhchhh
Q 001530 771 PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 771 ~lvQqKQK~AqIdEKrE 787 (1059)
..|-.++=...++++++
T Consensus 36 ~~~l~~pi~~~l~~R~~ 52 (173)
T PRK13453 36 KKFAWGPLKDVMDKRER 52 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334344444555555
No 98
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.90 E-value=7.3e+02 Score=26.07 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=2.3
Q ss_pred ccccch
Q 001530 765 NITSFI 770 (1059)
Q Consensus 765 ~i~Sfi 770 (1059)
.+..|+
T Consensus 10 q~I~Fl 15 (154)
T PRK06568 10 LAVSFV 15 (154)
T ss_pred HHHHHH
Confidence 334433
No 99
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=27.79 E-value=8.8e+02 Score=26.99 Aligned_cols=8 Identities=75% Similarity=0.895 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 001530 878 QQQEHEEK 885 (1059)
Q Consensus 878 kQaE~EeK 885 (1059)
+|.|.|+|
T Consensus 196 qqkEkeek 203 (225)
T KOG4848|consen 196 QQKEKEEK 203 (225)
T ss_pred HHHHHHHH
Confidence 34444333
No 100
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.79 E-value=6.7e+02 Score=25.57 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=12.6
Q ss_pred Cccccccccch------hhhhhhhHhhhhhchhh
Q 001530 760 NNIVSNITSFI------PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 760 ~Nivs~i~Sfi------~lvQqKQK~AqIdEKrE 787 (1059)
+.++-.+..|+ ..|-+++=...++++++
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~ 42 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFAWKPILGAVKERED 42 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555543 33333333344555444
No 101
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=27.48 E-value=7.1e+02 Score=25.77 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=6.7
Q ss_pred cCccccccccch
Q 001530 759 HNNIVSNITSFI 770 (1059)
Q Consensus 759 ~~Nivs~i~Sfi 770 (1059)
++.++-.+..|+
T Consensus 18 ~~~~~~~~i~Fl 29 (175)
T PRK14472 18 PGLIFWTAVTFV 29 (175)
T ss_pred HHHHHHHHHHHH
Confidence 445666666654
No 102
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=26.52 E-value=1.3e+03 Score=28.46 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=8.5
Q ss_pred cccchhhhcccccccCC
Q 001530 476 SVPNRLLECIDLRNNPS 492 (1059)
Q Consensus 476 svpn~llegm~~~~~l~ 492 (1059)
+|-.|-++|=+-++|+-
T Consensus 8 ~i~kGkf~gdgTSn~IE 24 (672)
T KOG4722|consen 8 IIFKGKFEGDGTSNNIE 24 (672)
T ss_pred HhhcCcccCCCCccccc
Confidence 33445555555555553
No 103
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=22.45 E-value=2e+02 Score=35.93 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=9.9
Q ss_pred cCCCCCccCCCC-CCCC
Q 001530 1028 LSVSPEVIFPPG-SFCS 1043 (1059)
Q Consensus 1028 qrVDPDkIF~~~-~spd 1043 (1059)
-++ |..||.+. -.++
T Consensus 520 iRv-PEIiFqPsiiG~d 535 (645)
T KOG0681|consen 520 IRV-PEIIFQPSIIGID 535 (645)
T ss_pred ecc-ceeeeccccccch
Confidence 356 89999655 4555
No 104
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.42 E-value=7.5e+02 Score=24.32 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=6.7
Q ss_pred hhhhhhhHhhhhhchhh
Q 001530 771 PLVQQKQAAAIITGKRD 787 (1059)
Q Consensus 771 ~lvQqKQK~AqIdEKrE 787 (1059)
..|=.++=...++++++
T Consensus 23 ~~~l~~pi~~~l~~R~~ 39 (140)
T PRK07353 23 NALFYKPVGKVVEERED 39 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334333333444444
No 105
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=21.39 E-value=1.9e+03 Score=28.70 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=5.6
Q ss_pred cccccCCCCCc
Q 001530 1024 IPSLLSVSPEV 1034 (1059)
Q Consensus 1024 LlSQqrVDPDk 1034 (1059)
|.+++.-||+-
T Consensus 751 las~qardp~f 761 (828)
T PF04094_consen 751 LASYQARDPDF 761 (828)
T ss_pred HhhhcccCCCc
Confidence 34555555653
No 106
>PTZ00491 major vault protein; Provisional
Probab=21.26 E-value=2e+03 Score=28.87 Aligned_cols=10 Identities=0% Similarity=0.106 Sum_probs=6.0
Q ss_pred ccccCCCccC
Q 001530 732 NRFTKPKLSE 741 (1059)
Q Consensus 732 ~RfsKPrL~G 741 (1059)
.++.|-.+||
T Consensus 600 a~iiR~aVFg 609 (850)
T PTZ00491 600 AKIIRQAVFG 609 (850)
T ss_pred HHHHHHHhcc
Confidence 4455566677
No 107
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=21.19 E-value=8.7e+02 Score=24.61 Aligned_cols=123 Identities=19% Similarity=0.073 Sum_probs=0.0
Q ss_pred cccccCccccccccchhhhhhhhHhhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001530 755 RESKHNNIVSNITSFIPLVQQKQAAAIITGKRD-VKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLE 833 (1059)
Q Consensus 755 ~~~K~~Nivs~i~Sfi~lvQqKQK~AqIdEKrE-vr~KalEAEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~E 833 (1059)
+....++++-++..|+=++===.++.+-.-.+- .+++..=...-..-...+.++.....+...+.+.++.+..+-...-
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a 80 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEY 80 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001530 834 LQKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQ 878 (1059)
Q Consensus 834 eeRRKkEEERkKKEaE~eeRKRqeEEekRKEeErKRKr~EEeRkk 878 (1059)
.....+..+....+++.+..+..++-+..=+.|+. +...+.+..
T Consensus 81 ~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-~a~~~l~~e 124 (159)
T PRK13461 81 KSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-KAEYEIKNQ 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
No 108
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=20.97 E-value=1.4e+03 Score=27.02 Aligned_cols=11 Identities=0% Similarity=-0.000 Sum_probs=4.4
Q ss_pred ccccccCCCCC
Q 001530 709 RRQAKMSHGPS 719 (1059)
Q Consensus 709 r~t~K~KeNqs 719 (1059)
.+.+.+..|..
T Consensus 78 ~~~~~v~~n~~ 88 (340)
T KOG3756|consen 78 DTEGAVFRNGG 88 (340)
T ss_pred ccccccccccc
Confidence 33444444433
No 109
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=3.5e+02 Score=29.68 Aligned_cols=7 Identities=0% Similarity=0.136 Sum_probs=2.6
Q ss_pred eeecccc
Q 001530 936 VVSTSDA 942 (1059)
Q Consensus 936 ~VntADg 942 (1059)
.+.+++|
T Consensus 199 e~k~~~~ 205 (213)
T KOG4055|consen 199 ELKDKNG 205 (213)
T ss_pred hcccccc
Confidence 3333333
No 110
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=20.70 E-value=1.5e+02 Score=34.42 Aligned_cols=8 Identities=50% Similarity=0.389 Sum_probs=3.1
Q ss_pred ccccccch
Q 001530 763 VSNITSFI 770 (1059)
Q Consensus 763 vs~i~Sfi 770 (1059)
|+.-++|.
T Consensus 81 ~~dpi~~g 88 (378)
T KOG1996|consen 81 VSDPISFG 88 (378)
T ss_pred ccCccccc
Confidence 33333443
No 111
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.61 E-value=1.5e+03 Score=27.28 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.3
Q ss_pred hcccccccCccccccccccCCCCCCCCcCCCCC
Q 001530 587 EGISLEVASPVGELWDWKKSNSSSSDKQGSLNP 619 (1059)
Q Consensus 587 egi~~~~~sp~~~l~~~~~s~s~~~~~~~~~~~ 619 (1059)
-||..+.+.+=|..|-| -+=-|.+++|
T Consensus 16 ~g~~~~~lv~~~wvf~w------q~~q~~~ln~ 42 (428)
T KOG2668|consen 16 GGIEDIKLVKKSWVFPW------QQCTVFDVSP 42 (428)
T ss_pred ccccCceecccceeeee------eeeeEEeecc
Confidence 35667777777888888 3344555555
No 112
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=1.7e+03 Score=27.72 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=6.1
Q ss_pred cccccccccccC
Q 001530 725 CINRVSHNRFTK 736 (1059)
Q Consensus 725 gi~R~l~~RfsK 736 (1059)
||-|+-...|..
T Consensus 111 gfy~vy~dvf~~ 122 (508)
T KOG0717|consen 111 GFYRVYQDVFNA 122 (508)
T ss_pred hhHHHHHHHHHH
Confidence 555555444443
No 113
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.02 E-value=9.2e+02 Score=24.41 Aligned_cols=122 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccccCccccccccchhhhhhhhHhhhhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001530 756 ESKHNNIVSNITSFIPLVQQKQAAAIITGKRD-VKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQLEL 834 (1059)
Q Consensus 756 ~~K~~Nivs~i~Sfi~lvQqKQK~AqIdEKrE-vr~KalEAEEAaKReEEKrE~eRkqeKEAreeEraRkEEEEkRk~Ee 834 (1059)
.....|++-.+..|+=++===.++.+-.-.+- .+++..=+..-..-.+.+.+.+....+.+.....+|.+.+..+..-.
T Consensus 4 ~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~ 83 (141)
T PRK08476 4 DVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAI 83 (141)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001530 835 QKKKKEEEKKKKLADMAARKRQREEEERKEKERKRKRVMESRRQ 878 (1059)
Q Consensus 835 eRRKkEEERkKKEaE~eeRKRqeEEekRKEeErKRKr~EEeRkk 878 (1059)
.+-+++.++....+. .+-.+..++....-+.++.+-..+.+.+
T Consensus 84 ~~A~~ea~~~~~~A~-~~~~~~~~~a~~~l~~e~~~~~~~l~~q 126 (141)
T PRK08476 84 AKAKEEAEKKIEAKK-AELESKYEAFAKQLANQKQELKEQLLSQ 126 (141)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!