Query 001530
Match_columns 1059
No_of_seqs 336 out of 607
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 17:18:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001530.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_pdb/001530hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4af3_D Incenp, inner centromer 1.0 1 1 71.1 0.3 55 1004-1058 3-59 (71)
2 2vgp_C Inner centromere protei 1.0 1 1 54.6 -0.4 41 1011-1051 1-43 (43)
3 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 33.8 7.7 28 388-415 22-49 (575)
4 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 32.0 6.4 17 789-805 304-320 (575)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 23.5 16.7 14 622-635 1667-1680(3245)
6 2b5u_A Colicin E3; high resolu 1.0 1 1 19.7 10.1 17 922-938 462-478 (551)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 19.3 17.4 26 115-140 4-34 (597)
8 2y3z_A 3-isopropylmalate dehyd 1.0 1 1 19.2 -0.5 25 140-164 242-266 (359)
9 2qag_C Septin-7; cell cycle, c 1.0 1 1 18.7 0.0 67 831-899 319-388 (418)
10 1cnz_A IPMDH, IMDH, protein (3 1.0 1 1 17.9 -1.2 61 114-180 217-286 (363)
No 1
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=71.05 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=48.6
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 1016888731233322442202345--899876689997877212356234441049
Q 001530 1004 DRLNTKFIPSWASKRASALIIPSLL--SVSPEVIFPPGSFCSISEVLLPRRQQQKMR 1058 (1059)
Q Consensus 1004 e~Rr~K~IPSWASKnaLaqALlSQq--rIDPDkIF~~~~spdLSEIF~PrKpQr~~~ 1058 (1059)
|.+++|.||+||++..|.+++..|+ .+||+.||+.+..|+|.+||...|+.-..|
T Consensus 3 e~~prk~iP~WA~~~~L~~~L~~Q~~~~~Dpd~IFG~i~p~~LeeIF~~~k~r~~kR 59 (71)
T 4af3_D 3 EAHPRKPIPTWARGTPLSQAIIHQYYHPPNLLELFGTILPLDLEDIFKKSKPRYHKR 59 (71)
T ss_dssp -----CCCCGGGSHHHHHHHHHHHHHSCCCHHHHHCCCCCCCSTTTCC---------
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf 568889887765868999999998636989999869999989999817564010348
No 2
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=1.00 E-value=1 Score=54.62 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 731233322442202345--89987668999787721235623
Q 001530 1011 IPSWASKRASALIIPSLL--SVSPEVIFPPGSFCSISEVLLPR 1051 (1059)
Q Consensus 1011 IPSWASKnaLaqALlSQq--rIDPDkIF~~~~spdLSEIF~Pr 1051 (1059)
||+||.+..|.+++..|+ +.|+|.||+.+..|+|.+||.++
T Consensus 1 IP~WA~~~~L~~~l~~Q~~~p~D~d~iFG~I~pp~LeeiF~~~ 43 (43)
T 2vgp_C 1 IPAWASGNLLTQAIRQQYYKPIDVDRMYGTIDSPKLEELFNKS 43 (43)
T ss_dssp CCGGGSHHHHHHHHHHHHHSCCCHHHHTTTSCCCCHHHHC---
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHCCC
T ss_conf 9753045899999999871599989986898995899984649
No 3
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=33.77 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 7997543322224789864311104211
Q 001530 388 VGSPQRKLVDLIGSDQIMPEFEGFILET 415 (1059)
Q Consensus 388 ~~sp~~q~ldli~~d~~~p~~egf~mq~ 415 (1059)
+.+.+..+++.|-..-.+++.++|.+.-
T Consensus 22 ~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 22 QTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp TTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9887999999999982999765406999
No 4
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=32.03 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999
Q 001530 789 KVKALEAAEAAKRLAVE 805 (1059)
Q Consensus 789 kkKalEAEEAaKReEEK 805 (1059)
+-|+.+.++..+|..++
T Consensus 304 qm~~~a~e~~~~~~~e~ 320 (575)
T 2i1j_A 304 QMKAQAREEKLAKQAQR 320 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999888888889999
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=23.47 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 86542233466423
Q 001530 622 PFISEEDENTDMVT 635 (1059)
Q Consensus 622 ~~IsEEnE~~~~v~ 635 (1059)
++|++=.=.+..|+
T Consensus 1667 a~i~~~~vfqi~i~ 1680 (3245)
T 3vkg_A 1667 AWMNGLSIYTIKVN 1680 (3245)
T ss_dssp HHHTTCEEECCC--
T ss_pred HHHHCCEEEEEEEE
T ss_conf 99828846998631
No 6
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=1.00 E-value=1 Score=19.70 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCEEE
Q ss_conf 68645434676540200
Q 001530 922 ENPAKMKKTESKATVVS 938 (1059)
Q Consensus 922 Nnl~k~P~TES~as~Vs 938 (1059)
+...+.|+|+..+-+-.
T Consensus 462 h~y~paP~~~~i~g~~~ 478 (551)
T 2b5u_A 462 HDYHPAPKTENIKGLGD 478 (551)
T ss_dssp TTSCCCCCGGGCCSSCC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 76578987666778865
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=19.26 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCHHHHHCC-----CCCCCCCC
Q ss_conf 974433334850111000-----00000221
Q 001530 115 DPAYELEYSKPADACCES-----CVVKEATI 140 (1059)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 140 (1059)
+..|.+....|...||.. |+.....|
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i 34 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHI 34 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCEE
T ss_conf 6432256789998576557675068547603
No 8
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=1.00 E-value=1 Score=19.19 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1354333444433553620033333
Q 001530 140 IGDIQSEENSSIAGSTGITISQSYN 164 (1059)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1059)
.|||.|.+-+.+.|+.|.+-|-|.+
T Consensus 242 fGDILSD~aa~l~GslGl~pSanig 266 (359)
T 2y3z_A 242 FGDILSDLASVLPGSLGLLPSASLG 266 (359)
T ss_dssp HHHHHHHHHHTTTSCGGGCEEEEEE
T ss_pred CHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 1288888887743852105444767
No 9
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.67 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589999889999999999999---999999999999999999999999986899999999999999998899
Q 001530 831 QLELQKKKKEEEKKKKLADMA---ARKRQREEEERKEKERKRKRVMESRRQQQEHEEKLRAKKEEERKKKEA 899 (1059)
Q Consensus 831 k~EeeKKKkEEERkKkEeE~e---eRKRqeEEekRKEeEeKRKr~EEeRKkqaEeEEK~ReekEkErKrKEE 899 (1059)
..+++++.-+..-+++++++. +.+.+++|++-|+-|.+-.+.-++.+++ .+++..+.+|+.++..++
T Consensus 319 ~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~--l~~~~~~l~~~~~~~~~~ 388 (418)
T 2qag_C 319 QMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKN--LEAQHKELEEKRRQFEDE 388 (418)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 8899998879999999999999999999999999999999899989999999--999999999999999999
No 10
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=1.00 E-value=1 Score=17.89 Aligned_cols=61 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 897443333485011100000000221---------3543334444335536200333333454445434544454
Q 001530 114 PDPAYELEYSKPADACCESCVVKEATI---------GDIQSEENSSIAGSTGITISQSYNQQHFSTTDSFNKVNSF 180 (1059)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1059)
||-.|+-.| .|+||-..|...... |||.|.+-+.+.|+.|.+-|-|++...+ --|+-+.|+
T Consensus 217 pdI~~~~~~---vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~---a~fEpvHGS 286 (363)
T 1cnz_A 217 PDVELAHMY---IDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGF---GLYEPAGGS 286 (363)
T ss_dssp TTSEEEEEE---HHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSC---EEEEESSCC
T ss_pred CCCEEEEEE---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCC---EEEECCCCC
T ss_conf 994586553---9999999852955550999877106999899887469875454003089987---678768897
Done!