Query 001530
Match_columns 1059
No_of_seqs 336 out of 607
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 17:25:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001530.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_scop/001530hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5la_ d.6.1.1 (A:) Prion pro 7.2 44 0.0032 7.9 0.3 14 39-52 2-15 (107)
2 d1u3ma_ d.6.1.1 (A:) Prion pro 6.9 47 0.0034 7.7 0.4 14 39-52 2-15 (117)
3 d2bi6h1 g.3.12.1 (H:8-31) Brom 6.7 49 0.0036 7.6 1.8 19 520-547 3-21 (26)
4 d1a05a_ c.77.1.1 (A:) 3-isopro 5.6 43 0.0031 8.0 -0.8 23 141-163 245-267 (357)
5 d1wb1a3 b.44.1.1 (A:272-387) E 4.1 90 0.0066 5.7 0.3 16 424-439 82-97 (116)
6 d1g2ua_ c.77.1.1 (A:) 3-isopro 3.8 78 0.0057 6.1 -0.5 13 432-444 284-296 (345)
7 d1cnza_ c.77.1.1 (A:) 3-isopro 3.2 57 0.0041 7.1 -1.7 23 141-163 250-272 (363)
8 d1pb1a_ c.77.1.1 (A:) Isocitra 3.1 71 0.0052 6.4 -1.3 19 373-391 313-331 (416)
9 d1whna_ d.50.1.1 (A:) tRNA-dih 2.9 1.4E+02 0.01 4.3 4.6 111 429-556 17-128 (128)
10 d2a9ua1 a.118.23.1 (A:6-139) U 2.8 1.4E+02 0.01 4.3 6.4 76 757-832 59-134 (134)
No 1
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle (Trachemys scripta) [TaxId: 34903]}
Probab=7.19 E-value=44 Score=7.88 Aligned_cols=14 Identities=50% Similarity=0.838 Sum_probs=11.1
Q ss_pred HHHCCCCCCCCCCC
Q ss_conf 22102332103681
Q 001530 39 SLERGLGSYMVGSL 52 (1059)
Q Consensus 39 ~~~~~~~~~~~~~~ 52 (1059)
|.--|||.||.||.
T Consensus 2 svvgglggymlg~a 15 (107)
T d1u5la_ 2 SVVGGLGGYALGSA 15 (107)
T ss_dssp CSCSSCTTSEECCC
T ss_pred CCCCCCHHHHHHHH
T ss_conf 72335204555323
No 2
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.88 E-value=47 Score=7.71 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=11.1
Q ss_pred HHHCCCCCCCCCCC
Q ss_conf 22102332103681
Q 001530 39 SLERGLGSYMVGSL 52 (1059)
Q Consensus 39 ~~~~~~~~~~~~~~ 52 (1059)
|.--|||.||.||.
T Consensus 2 svvgglggYmlGsa 15 (117)
T d1u3ma_ 2 SVVGGLGGYAMGRV 15 (117)
T ss_dssp CSSSCSSCCEECCC
T ss_pred CCCCCCCHHHHHHH
T ss_conf 61235303331001
No 3
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=6.66 E-value=49 Score=7.58 Aligned_cols=19 Identities=42% Similarity=0.842 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6677888789987432358877840011
Q 001530 520 SYSDCSLFSSTQPASEIRKPFGSPIGKF 547 (1059)
Q Consensus 520 s~sd~~~~s~~~~~~~~~~p~~sp~~k~ 547 (1059)
.||||+-||.+ |-.-+||.
T Consensus 3 tysdcpgfckt---------ckaefgky 21 (26)
T d2bi6h1 3 TYSDCPGFCKT---------CKAEFGKY 21 (26)
T ss_dssp CCSSCCTTCSS---------BCCBTTBC
T ss_pred CCCCCCHHHHH---------HHHHHCCE
T ss_conf 52458348889---------99985756
No 4
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=5.58 E-value=43 Score=8.01 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35433344443355362003333
Q 001530 141 GDIQSEENSSIAGSTGITISQSY 163 (1059)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (1059)
|||.|..-+.+.|+.|.+-|-|+
T Consensus 245 GDIlSDl~a~l~GglGl~ps~ni 267 (357)
T d1a05a_ 245 GDILSDEASQLTGSIGMLPSASL 267 (357)
T ss_dssp HHHHHHHHHHTTSCGGGCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEEC
T ss_conf 88788999887357654103000
No 5
>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3 {Methanococcus maripaludis [TaxId: 39152]}
Probab=4.10 E-value=90 Score=5.70 Aligned_cols=16 Identities=44% Similarity=0.839 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 8887866679982468
Q 001530 424 GEDINFDKLDLPKTTI 439 (1059)
Q Consensus 424 ~~~~~~~~~dlp~~~~ 439 (1059)
||.+=.-.||||+||+
T Consensus 82 GDrilitrLDLPPTTL 97 (116)
T d1wb1a3 82 GDRVLITRLDLPPTTL 97 (116)
T ss_dssp SCCCBEECTTSCTTSC
T ss_pred CCEEEEEECCCCCCEE
T ss_conf 8828999816998378
No 6
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]}
Probab=3.84 E-value=78 Score=6.13 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.9
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 7998246878899
Q 001530 432 LDLPKTTIERASV 444 (1059)
Q Consensus 432 ~dlp~~~~~~a~~ 444 (1059)
+-=|..+|-+++|
T Consensus 284 iaNP~a~Ils~am 296 (345)
T d1g2ua_ 284 IANPTAAILSAAM 296 (345)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 6396999999999
No 7
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]}
Probab=3.21 E-value=57 Score=7.11 Aligned_cols=23 Identities=48% Similarity=0.614 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35433344443355362003333
Q 001530 141 GDIQSEENSSIAGSTGITISQSY 163 (1059)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (1059)
|||.|..-+.+.|+.|++-|-|+
T Consensus 250 GDIlSDl~a~l~GglG~~~s~ni 272 (363)
T d1cnza_ 250 GDILSDECAMITGSMGMLPSASL 272 (363)
T ss_dssp HHHHHHHHHHHHTCGGGCEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCHHEEE
T ss_conf 77678899887504542111034
No 8
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}
Probab=3.11 E-value=71 Score=6.42 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=11.1
Q ss_pred CCEEECCCCCCCCCCCCCC
Q ss_conf 5435279953478877997
Q 001530 373 GKCHLEGNGRASQCSVGSP 391 (1059)
Q Consensus 373 ~~~~~~~~~~~s~~s~~sp 391 (1059)
.....||.|.+++++.|..
T Consensus 313 aa~l~GglGl~pSanig~~ 331 (416)
T d1pb1a_ 313 LAAQVGGIGIAPGANIGDE 331 (416)
T ss_dssp HHHHTTCTTTCCCEEECSS
T ss_pred HHHHHCCCCCCCCCCCCCC
T ss_conf 8886237665445466877
No 9
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.86 E-value=1.4e+02 Score=4.35 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-CCHHHHHHCCCCCCC
Q ss_conf 6667998246878899999974321158875521111224799976666400010023334678-880345410134444
Q 001530 429 FDKLDLPKTTIERASVLEQLCKSACMNTPLSHFFTTYKLHQAPNLCQSVPNRLLECIDLRNNPS-LNDNIVKQLKASYSC 507 (1059)
Q Consensus 429 ~~~~dlp~~~~~~a~~~e~lcks~~~~tp~~h~~~~~k~~~~~~~~qsvpn~llegm~~~~~l~-~n~~~~k~l~~~~~~ 507 (1059)
|++.++|.. +.+-++|-.+|-...+..|.+.+... ..-..|.-.| .++|.-+.+... .|-...+|.-|-.-+
T Consensus 17 ~~r~~~p~~-~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V---~v~g~~~~s~~g~~SKK~AEq~AA~~AL 89 (128)
T d1whna_ 17 FDRRAYPPQ-ITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVV---TVAEQKYQSTLWDKSKKLAEQTAAIVCL 89 (128)
T ss_dssp CCGGGSCTT-CCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEE---EETTEEEEESSCBSSHHHHHHHHHHHHH
T ss_pred HHHCCCCCC-CCHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCEEEE---EECCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 553017889-98789999999863999976887622---5577777999---9888476516774538999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5411243358876677888789987432358877840011011245777
Q 001530 508 FDEEADHAYQGRSYSDCSLFSSTQPASEIRKPFGSPIGKFWDRITSNSA 556 (1059)
Q Consensus 508 ~~~~~n~~~~grs~sd~~~~s~~~~~~~~~~p~~sp~~k~w~~~~~~s~ 556 (1059)
..++++. |+.-.+.+.+... ....||.+|.| -|.++.+|
T Consensus 90 ~~Lg~~~---~~~~~~~~~~~~~----~~~~~~~~P~~---~~~~~~~~ 128 (128)
T d1whna_ 90 RSQGLPE---GRLGEESPSLNKR----KREAPDQDPGG---PRSGPSSG 128 (128)
T ss_dssp HHHTCSS---STTTSCCCCCCCC----CCCCCCSSCCC---SCCSSSCC
T ss_pred HHHCCCC---CCCCCCCHHHHHH----HHCCCCCCCCC---CCCCCCCC
T ss_conf 9838988---8754445245544----33157789999---88999998
No 10
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.84 E-value=1.4e+02 Score=4.33 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6667632222232035666467664201035889999999999999999999999999999999999999998558
Q 001530 757 SKHNNIVSNITSFIPLVQQKQAAAIITGKRDVKVKALEAAEAAKRLAVEKENERKMKKEALKLERAKLEQENLKQL 832 (1059)
Q Consensus 757 ~k~~Nivs~i~Sfi~lvQqKQKlAqIdEKkDvkkKalEAEEAaKReEEKrE~eRk~eKEareeEraRkEEEEkRk~ 832 (1059)
+++.++|..|..-..+-+.+......-.+..+..--..++.-+....++.+........+++.++...+-....+.
T Consensus 59 ~Ry~~L~eki~kHpdyk~~~~~~~~~l~~~~~~~~l~~~E~Lk~~L~~rYe~~~~~~~~~~~~~~~~~~~~~~~~q 134 (134)
T d2a9ua1 59 MKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134 (134)
T ss_dssp HHHHHHHHHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999997709431201158999886645889999999989999999999999998899989999998765149
Done!