Query 001531
Match_columns 1058
No_of_seqs 623 out of 5235
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:47:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001531.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_830-834//hhsearch_pdb/001531hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyu_A Glycine dehydrogenase ( 1.0 1 1 533.7 42.4 421 100-529 1-435 (438)
2 1wyu_B Glycine dehydrogenase s 1.0 1 1 474.1 38.1 438 547-1045 29-472 (474)
3 1wyu_B Glycine dehydrogenase s 1.0 1 1 329.0 38.1 374 129-529 29-436 (474)
4 1wyu_A Glycine dehydrogenase ( 1.0 1 1 327.4 36.2 406 514-969 5-437 (438)
5 3mc6_A Sphingosine-1-phosphate 1.0 1 1 270.2 31.0 382 560-974 37-439 (497)
6 3mad_A Sphingosine-1-phosphate 1.0 1 1 245.1 34.2 385 559-974 69-471 (514)
7 3mc6_A Sphingosine-1-phosphate 1.0 1 1 244.7 33.1 391 102-529 2-432 (497)
8 2dgk_A GAD-beta, GADB, glutama 1.0 1 1 239.4 37.7 383 560-974 17-436 (452)
9 2jis_A Cysteine sulfinic acid 1.0 1 1 238.8 26.8 388 560-971 81-514 (515)
10 3vp6_A Glutamate decarboxylase 1.0 1 1 237.7 28.2 389 560-972 68-505 (511)
No 1
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=1.00 E-value=1 Score=533.73 Aligned_cols=421 Identities=34% Similarity=0.526 Sum_probs=383.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCC
Q ss_conf 46899999999999989199998876520299842-24788988889899999999999998607863-32114999999
Q 001531 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN 177 (1058)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~sE~e~~~~~~~la~~n~~-~~~~lG~g~~~ 177 (1058)
.+|||||++|+++||++||++|+||||++ ||+++ ++ +++|| +++||.++++++..++++|.. +.+|+|.|+|+
T Consensus 1 ~~~~~~~~~~~~~ml~~~g~~~~~~~~~~-~p~~~~~~-~~~lp---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 75 (438)
T 1wyu_A 1 MDYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSP-PIDLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRS 75 (438)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSTGGGGTT-SCGGGSSC-CCCCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCC
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHH-CCHHHHCC-CCCCC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99899299999999997499988999885-85987458-78989---998999999999999843767651106777658
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 98909999988819976434598735785479999999999999851999752576043589999999981110699989
Q 001531 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKT 257 (1058)
Q Consensus 178 ~~~p~~i~~~i~~~~~~~t~ytpyq~eisqG~l~~l~e~q~~ia~LtG~~~anasl~d~~taa~ea~~~a~~~~~~~~d~ 257 (1058)
+.+|.++ ++++++++|++.|+|||||++||.++.+.++++++++++|++.+|+++++++|+++|++++++++. ++++
T Consensus 76 ~~~p~~v-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~--~gd~ 152 (438)
T 1wyu_A 76 HHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--GRMG 152 (438)
T ss_dssp CCCCHHH-HHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--TCCE
T ss_pred CCCCHHH-HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCC--CCCE
T ss_conf 7182899-998746312314787760656449999999999999985998325688372789999999997607--9998
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCHH----HHCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHCCCEEEEEE
Q ss_conf 999399998799999984338991999918201----1023999759999848995123267999999986696999992
Q 001531 258 FIIASNCHPQTIDICITRADGFDIKVVVSDLKD----IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMAT 333 (1058)
Q Consensus 258 viv~~~~Hps~~~~~~~~a~~~gi~v~~~~~~~----l~~i~~~t~~vvv~~pn~~G~i~di~eI~~~ah~~gal~iV~a 333 (1058)
|+++...|+++..+++.+++..|++++.++.++ ++.++++|++|++++||.+|.+.|+++|+++||++|++++|++
T Consensus 153 Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 153 VLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHCCCEEEEEE
T ss_conf 99848658768999999998779789998676786688991887389999879987277029999999998599899986
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCCCCC
Q ss_conf 66553578999854422999067423543678997058999703334119981786633289985206631221111111
Q 001531 334 DLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (1058)
Q Consensus 334 ~~~slg~l~~pg~~GaDi~vgs~k~lg~P~~~GGP~~G~l~~~~~~~r~lpgrivG~s~d~~g~~~~~l~lqtreqhirR 413 (1058)
|.+++|.+..++++|+|++++++|+||.|+++|||++||+++++++++++|++++|.+.|..|.++|.+++|+|+||+||
T Consensus 233 d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 233 DPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp CTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred CHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEECCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf 46541075897647998899778646788668998766789769999749986322223568874325632666553201
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEECCC-CCCCEEEEECCC-HHHHHH
Q ss_conf 346887540468999999999998190319999999999999999997239-98697499-974479995399-999999
Q 001531 414 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-PFFDTVKVKCAD-AHAIAS 490 (1058)
Q Consensus 414 ekaTsnict~~~l~a~~aa~y~~~~g~~Gl~~ia~~~~~~a~~l~~~L~~~-G~~~v~~~-~~~~~v~i~~~~-~~~i~~ 490 (1058)
+++|+|+|+++.+.++.+++|+.+++++|++++.+++..+++++.++|+++ | +++... ++|..+.+..+. ..++.+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPG-VRPFTPKPFFNEFALALPKDPEAVRR 391 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-CEECSCSSBCSEEEEECSSCHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCCCCEEEEEEEECCCCHHHHHH
T ss_conf 12567734219999999999999968888999999999999999999762898-68778998378999957999999999
Q ss_pred HHHHCCCEE--EEC---CCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999859623--001---699399993269999999999999819
Q 001531 491 AAYKIEMNL--RVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (1058)
Q Consensus 491 ~L~~~GI~~--~~~---~~~~iris~~e~~t~edid~li~~l~~ 529 (1058)
+|.++||.+ +.. .++.+|+|+++++|++|+++++++|+.
T Consensus 392 ~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 392 ALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp HHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99978956524566243899699995146899999999999999
No 2
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=1.00 E-value=1 Score=474.08 Aligned_cols=438 Identities=38% Similarity=0.704 Sum_probs=361.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 49997447999989986688899999999999982174576754224424115776101104446523336699993111
Q 001531 547 AIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626 (1058)
Q Consensus 547 ~ip~~~~~~~~~~~~p~~~~~~se~e~~r~~~~l~~~~~~~~~~~i~lGs~t~~~~~~~~~~~~~~~~f~~~~P~~p~e~ 626 (1058)
.||++++|++++ .+| ++||.++++++++|+++|.+.++++++||+|++++++.+......+ +..||||++.+.
T Consensus 29 ~~p~~~~~~~~~-~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~ 101 (474)
T 1wyu_B 29 LIPKEHLREVPP-RLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARL--FADLHPYQDPRT 101 (474)
T ss_dssp HSCGGGBCSSCC-CCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHT--TSSCCTTSCGGG
T ss_pred CCCHHHHCCCCC-CCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHCCCCCCHHH
T ss_conf 399888406899-999----9899999999999983787866586226203322798999999999--973288995245
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCCHHHHHHCCCEEE
Q ss_conf 011899999999999987299922030486589999999999999997099-9998899949997765988875796999
Q 001531 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (1058)
Q Consensus 627 ~~G~~~~i~el~~~Lael~G~~~~~l~~~sGa~ge~a~Llair~y~~~~G~-~~r~~ILvp~saHgt~pa~a~~~G~~vv 705 (1058)
++|..+++.++++++++++|++...+++++|+++++.++++++.|+..+|+ .++++||++.++|+++...+.+.|++++
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv 181 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 181 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf 86999999999999999978996365181799999999999999998547766899899958747346999998798899
Q ss_pred EECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99189999989999999988069985999997699862332149999999997198999965573222376898866775
Q 001531 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (1058)
Q Consensus 706 ~V~~d~~g~iD~e~L~~~i~~~~~~taaIvit~Ps~~G~~e~di~eI~~lah~~G~lv~vDgA~~~al~gl~~pg~~GaD 785 (1058)
.+++++++.+|+++|+++++ +++++|++++||++|.+..++++|+++||++|+++++|+++.....+..+++++|+|
T Consensus 182 ~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~d 258 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFD 258 (474)
T ss_dssp EECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCS
T ss_pred EECCCCCCCCCHHHHHHHHC---CCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCCCCC
T ss_conf 94579999809999997627---884699998999873107789999999998499899967404533367786657874
Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99828953135678888894169998078888889987434789-9-998877888777864113479999999999997
Q 001531 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-I-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (1058)
Q Consensus 786 i~~~s~hKtl~~P~g~GGPg~G~i~~~~~l~~~lp~~~vg~~~d-~-~~~~~~~~~~~i~sa~~g~~~~~~~a~a~l~~l 863 (1058)
++++++||+|++|+|+||||+|+++++++++++++++.++..+. + ....++.......+ ++++...+.++|+++..+
T Consensus 259 i~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~l~~~ 337 (474)
T 1wyu_B 259 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS-FYGNFLALVRAWAYIRTL 337 (474)
T ss_dssp EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSS-TTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHH
T ss_conf 8998173154467878999867999727889768987650468724752557666762415-768599999999999997
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--
Q ss_conf 43119999999999999999998600-992342688762027998546543458999999999999899222688789--
Q 001531 864 GSKGLTEASKIAILNANYMAKRLEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-- 940 (1058)
Q Consensus 864 G~eGl~~~~~~~~~~a~yl~~~L~~~-~~i~~~g~~g~~~~e~iv~~~~~~~~~gi~~~diak~L~~~Gi~~~~~~~P-- 940 (1058)
|.+++++..++..++++|+.++|++. +++.+. ++.++++++++. .+.+..++.++|.++||++++..||
T Consensus 338 g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~L~~~Gi~~~~~~~~~~ 409 (474)
T 1wyu_B 338 GLEGLKKAAALAVLNARYLKELLKEKGYRVPYD---GPSMHEFVAQPP-----EGFRALDLAKGLLELGFHPPTVYFPLI 409 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC---SSCCSCEEEBCS-----TTCCHHHHHHHHHHTTCCCCEESCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC---CCCCEEEEEECC-----CCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 788899999999999999999886669575689---970148999747-----998899999999977926222546665
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89979997278999999999999999999999978549877898612269998886588989998863231236875567
Q 001531 941 VPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRF 1020 (1058)
Q Consensus 941 ~~~~Lri~pt~~~t~eeid~fi~aL~~i~~e~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1020 (1058)
..+.+|++++..++++++|+++++|++++++ +|+.|+++||++
T Consensus 410 ~~~~lRis~~~~~t~e~id~~~~~L~~~~~~-----------~~~~l~~~p~~~-------------------------- 452 (474)
T 1wyu_B 410 VKEALMVEPTETEAKETLEAFAEAMGALLKK-----------PKEWLENAPYST-------------------------- 452 (474)
T ss_dssp STTCEEECCCTTSCHHHHHHHHHHHHHHHTS-----------CHHHHHTCCCSS--------------------------
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHH-----------CCHHHHCCCCCC--------------------------
T ss_conf 6987999951678999999999999999984-----------911431399888--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7434687655444478754344685
Q 001531 1021 AKFWPATGRVDNVYGDRNLICTLLP 1045 (1058)
Q Consensus 1021 ~~~~~~~~r~~~~~~~~~~~~~~~~ 1045 (1058)
+|+|+||++|||||+|+|..
T Consensus 453 -----~~~~~~~~~~~~~~~~~~~~ 472 (474)
T 1wyu_B 453 -----PVRRLDELRANKHPKLTYFD 472 (474)
T ss_dssp -----SSCSBCHHHHHHSCBCSSSC
T ss_pred -----CCCCCCCCCCCCCCEEEECC
T ss_conf -----85764345555572124306
No 3
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=1.00 E-value=1 Score=328.97 Aligned_cols=374 Identities=18% Similarity=0.211 Sum_probs=296.5
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 299842-24788988889899999999999998607863---32114999999989099999888199764345987357
Q 001531 129 TVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (1058)
Q Consensus 129 ~ip~~~-~~~~~~lp~~~~~~sE~e~~~~~~~la~~n~~---~~~~lG~g~~~~~~p~~i~~~i~~~~~~~t~ytpyq~e 204 (1058)
.||+++ ++.+++|| ++||.++++++++++++|.. ...|+| +.++++.|.++. .+.++ ++.|+|||++
T Consensus 29 ~~p~~~~~~~~~~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~-~~~~~---~~~~~~~~~~ 99 (474)
T 1wyu_B 29 LIPKEHLREVPPRLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHE-EAARL---FADLHPYQDP 99 (474)
T ss_dssp HSCGGGBCSSCCCCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHH-HHHHT---TSSCCTTSCG
T ss_pred CCCHHHHCCCCCCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHHHH-HHHHH---HHHCCCCCCH
T ss_conf 399888406899999----98999999999999837878665862262-033227989999-99999---9732889952
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-CCHHHHHHHHHHHHCC---CCC---CCCEEEECCCCCHHHHHHHHHHH
Q ss_conf -854799999999999998519997525760-4358999999998111---069---99899993999987999999843
Q 001531 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLL-DEGTAAAEAMAMCNNI---QKG---KKKTFIIASNCHPQTIDICITRA 276 (1058)
Q Consensus 205 -isqG~l~~l~e~q~~ia~LtG~~~anasl~-d~~taa~ea~~~a~~~---~~~---~~d~viv~~~~Hps~~~~~~~~a 276 (1058)
.+||.++...++++++++++|++. .+++ .+||.+...++++.+. .++ ++++|+++...|+++...++.
T Consensus 100 ~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~-- 175 (474)
T 1wyu_B 100 RTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASM-- 175 (474)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHH--
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH--
T ss_conf 4586999999999999999978996--365181799999999999999998547766899899958747346999998--
Q ss_pred CCCCEEEEEECC--------HHHHC-CCCCEEEEEEECCCCCEEE-CCHHHHHHHHHHCCCEEEEEECCCCCCCC--CCC
Q ss_conf 389919999182--------01102-3999759999848995123-26799999998669699999266553578--999
Q 001531 277 DGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVMATDLLALTIL--KPP 344 (1058)
Q Consensus 277 ~~~gi~v~~~~~--------~~l~~-i~~~t~~vvv~~pn~~G~i-~di~eI~~~ah~~gal~iV~a~~~slg~l--~~p 344 (1058)
.|++++.++. ++|++ +++++++|++++||++|.+ .|+++|+++||++|+++++| +.++.+.+ .++
T Consensus 176 --~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~D-ea~~~~~~g~~~~ 252 (474)
T 1wyu_B 176 --AGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYD-GANLNAIMGWARP 252 (474)
T ss_dssp --TTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEE-GGGGGGTTTTCCH
T ss_pred --CCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEE-CCHHHHHCCCCCC
T ss_conf --7988999457999980999999762788469999899987310778999999999849989996-7404533367786
Q ss_pred CCCCCEEEEECC-CCCCCCCCCCCCCEEEEEEEHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 854422999067-4235436789970589997033341199817866332899852066312211111113468875404
Q 001531 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (1058)
Q Consensus 345 g~~GaDi~vgs~-k~lg~P~~~GGP~~G~l~~~~~~~r~lpgrivG~s~d~~g~~~~~l~lqtreqhirRekaTsnict~ 423 (1058)
+++|+|++++++ |+|++|+|+|||++|+++++++++++++++++|. + | ..|.+++ +++|||+|.+++. .
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~--~--g-~~~~~~~-~~~~~~~~~~~~~----~ 322 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER--G--E-EGFYLDF-DRPKSIGRVRSFY----G 322 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEE--C--S-SCEEEEC-CCTTCCCCSSSTT----S
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEC--C--C-CEEEECC-CCCCCCCCCCCCC----C
T ss_conf 65787489981731544678789998679997278897689876504--6--8-7247525-5766676241576----8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCEEEEECC--C-HHHHHHHHHHCCCEE
Q ss_conf 68999999999998190319999999999999999997239986974-9997447999539--9-999999999859623
Q 001531 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D-AHAIASAAYKIEMNL 499 (1058)
Q Consensus 424 ~~l~a~~aa~y~~~~g~~Gl~~ia~~~~~~a~~l~~~L~~~G~~~v~-~~~~~~~v~i~~~--~-~~~i~~~L~~~GI~~ 499 (1058)
+.+....+..++..+|.+++++..++...+++++.+.|+++| +++. +...++++.+..+ . ..++.++|.++||.+
T Consensus 323 ~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~ 401 (474)
T 1wyu_B 323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 401 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 599999999999997788899999999999999999886669-5756899701489997479988999999999779262
Q ss_pred EEC-----CCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 001-----699399993269999999999999819
Q 001531 500 RVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (1058)
Q Consensus 500 ~~~-----~~~~iris~~e~~t~edid~li~~l~~ 529 (1058)
... ..+.+|+++++++|++|+|+++++|+.
T Consensus 402 ~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 402 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 22546665698799995167899999999999999
No 4
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=1.00 E-value=1 Score=327.37 Aligned_cols=406 Identities=20% Similarity=0.319 Sum_probs=304.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCC
Q ss_conf 9999999999999819999877877665543114999744799998998668889999999999998217457-675422
Q 001531 514 TTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELS-LCHSMI 592 (1058)
Q Consensus 514 ~~t~edid~li~~l~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~r~~~~l~~~~~~-~~~~~i 592 (1058)
-+|++|++..++.++.+ ++|+|+. +||+.++++ ++ .+| .++||.++++++..++++|.. + ....
T Consensus 5 ~~~~~~~~~ml~~~g~~-----~~~~~~~----~~p~~~~~~-~~-~lp---~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 69 (438)
T 1wyu_A 5 PHTEEEIREMLRRVGAA-----SLEDLFA----HLPKEILSP-PI-DLP---EPLPEWKVLEELRRLAAQNLPAH-KAFL 69 (438)
T ss_dssp CCCHHHHHHHHHHHTCS-----STGGGGT----TSCGGGSSC-CC-CCC---CCCCHHHHHHHHHHHHHTSCCCT-TCCC
T ss_pred CCCHHHHHHHHHHCCCC-----CHHHHHH----HCCHHHHCC-CC-CCC---CCCCHHHHHHHHHHHHHCCCCCC-CCCC
T ss_conf 92999999999974999-----8899988----585987458-78-989---99899999999999984376765-1106
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCEE--EECCCHHHHHHHHHHHHH
Q ss_conf 44241157761011044465233-366999931110118999999999999872999220--304865899999999999
Q 001531 593 PLGSCTMKLNATTEMMPVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIR 669 (1058)
Q Consensus 593 ~lGs~t~~~~~~~~~~~~~~~~f-~~~~P~~p~e~~~G~~~~i~el~~~Lael~G~~~~~--l~~~sGa~ge~a~Llair 669 (1058)
+.|.+....+..+... ....+| ..|+||+| +.++|..+++.++++++++++|++..+ +.+++++.++ +++++++
T Consensus 70 ~~g~~~~~~p~~v~~~-~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~e-a~~~a~~ 146 (438)
T 1wyu_A 70 GGGVRSHHVPPVVQAL-AARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAE-GVLLALR 146 (438)
T ss_dssp CSSCCCCCCCHHHHHH-HTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHH-HHHHHHH
T ss_pred CCCCCCCCCCHHHHHH-HHCCHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH-HHHHHHH
T ss_conf 7776587182899998-746312314787760-656449999999999999985998325688372789999-9999976
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCHHH----HHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 999970999998899949997765988----8757969999918999998999999998806998599999769986233
Q 001531 670 AYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY 745 (1058)
Q Consensus 670 ~y~~~~G~~~r~~ILvp~saHgt~pa~----a~~~G~~vv~V~~d~~g~iD~e~L~~~i~~~~~~taaIvit~Ps~~G~~ 745 (1058)
. . ++++|+++...|.++... +...|++++.++. +++.+|+++ ++ ++|++|++++||++|.+
T Consensus 147 ~---~----~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~---~~t~~v~i~~pn~tG~~ 211 (438)
T 1wyu_A 147 E---T----GRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG---EEVGAVVVQNPNFLGAL 211 (438)
T ss_dssp H---H----TCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC---TTEEEEEEESSCTTSBC
T ss_pred C---C----CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECC-CCCCCCHHH----HC---CCEEEEEEECCCCCEEE
T ss_conf 0---7----99989984865876899999999877978999867-678668899----18---87389999879987277
Q ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 21499999999971989999655732223768988667759982895313567888889416999807888888998743
Q 001531 746 EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (1058)
Q Consensus 746 e~di~eI~~lah~~G~lv~vDgA~~~al~gl~~pg~~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~l~~~lp~~~vg 825 (1058)
. |+++|+++||++|+++++|.. ..+++.+..|+++|+|+++++ +|.|++|+++||||+|++++++++.+.+|+..+|
T Consensus 212 ~-~l~~i~~la~~~g~~vivd~d-~~a~g~~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g 288 (438)
T 1wyu_A 212 E-DLGPFAEAAHGAGALFVAVAD-PLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVS 288 (438)
T ss_dssp C-CHHHHHHHHHHTTCEEEEECC-TTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEE
T ss_pred E-CHHHHHHHHHHCCCEEEEEEC-HHHCCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEC
T ss_conf 0-299999999985998999864-654107589764799889977-8646788668998766789769999749986322
Q ss_pred CCCCC-CC---------C----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 47899-99---------8----87788877786411347999999999999743119999999999999999998600--
Q 001531 826 STGGI-PA---------P----EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-- 889 (1058)
Q Consensus 826 ~~~d~-~~---------~----~~~~~~~~i~sa~~g~~~~~~~a~a~l~~lG~eGl~~~~~~~~~~a~yl~~~L~~~-- 889 (1058)
.+.++ +. + ++.+++.++++. +...+..+++++..++++|+.+..++...+++++.++|++.
T Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~---~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g 365 (438)
T 1wyu_A 289 ETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN---AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPG 365 (438)
T ss_dssp EEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCH---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2235688743256326665532011256773421---9999999999999968888999999999999999999762898
Q ss_pred CCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC--C-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 992342688762027998546543458999999999999899222--6-8878989979997278999999999999999
Q 001531 890 YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG--P-TMSWPVPGTLMIEPTESESKEELDRYCDALI 966 (1058)
Q Consensus 890 ~~i~~~g~~g~~~~e~iv~~~~~~~~~gi~~~diak~L~~~Gi~~--~-~~~~P~~~~Lri~pt~~~t~eeid~fi~aL~ 966 (1058)
+++. ++ .++++.+.+.. +.+..++.++|.++||.+ . +..++ .+.+|+++++.++++|+|+++++|+
T Consensus 366 ~~~~--~~-~~~~~~~~~~~-------~~~~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~~~~~~l~ 434 (438)
T 1wyu_A 366 VRPF--TP-KPFFNEFALAL-------PKDPEAVRRALAERGFHGATPVPREYG-ENLALFAATELHEEEDLLALREALK 434 (438)
T ss_dssp CEEC--SC-SSBCSEEEEEC-------SSCHHHHHHHHHHTTCCCCEECCTTSC-SSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEC--CC-CCEEEEEEEEC-------CCCHHHHHHHHHHCCCEECCCCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6877--89-98378999957-------999999999999789565245662438-9969999514689999999999999
Q ss_pred HHH
Q ss_conf 999
Q 001531 967 SIR 969 (1058)
Q Consensus 967 ~i~ 969 (1058)
+++
T Consensus 435 ~~l 437 (438)
T 1wyu_A 435 EVL 437 (438)
T ss_dssp HHC
T ss_pred HHH
T ss_conf 985
No 5
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=270.17 Aligned_cols=382 Identities=16% Similarity=0.174 Sum_probs=271.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHH
Q ss_conf 998668889999999999998217--4576754224424-1157761011044465233366999931110118999999
Q 001531 560 THPVFNKYHTEHELLRYIHLLQSK--ELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (1058)
Q Consensus 560 ~~p~~~~~~se~e~~r~~~~l~~~--~~~~~~~~i~lGs-~t~~~~~~~~~~~~~~~~f~~~~P~~p~e~~~G~~~~i~e 636 (1058)
.+| ..++++.+++++++++... +..+.++.+ +|. +... +...+.....+..+...+++++ +.++|..++..+
T Consensus 37 ~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 111 (497)
T 3mc6_A 37 QLP--SNGIPQDDVIEELNKLNDLIPHTQWKEGKV-SGAVYHGG-DDLIHLQTIAYEKYCVANQLHP-DVFPAVRKMESE 111 (497)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGTCB-SSSCSCCC-HHHHHHHHHHHHHTSSCBTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCE-EEECCCCC-HHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH
T ss_conf 789--899899999999999865038988899988-44637893-6799999999997753278882-207579999999
Q ss_pred HHHHHHHHHCCC--C-EEEECCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCC-
Q ss_conf 999999872999--2-2030486589999999999999997-0999998899949997765988875796999991899-
Q 001531 637 LGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKA-RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (1058)
Q Consensus 637 l~~~Lael~G~~--~-~~l~~~sGa~ge~a~Llair~y~~~-~G~~~r~~ILvp~saHgt~pa~a~~~G~~vv~V~~d~- 711 (1058)
+++++++++|++ . ..+++++|+++...++++++.+... +|. .+++|+++...|.++...+...|++++.|++++
T Consensus 112 ~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~-~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~ 190 (497)
T 3mc6_A 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGI-TEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPT 190 (497)
T ss_dssp HHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCC-SSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTT
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999984899889849983737899999999999888753899-7764999577407899999985982799951764
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC---------C--CCC
Q ss_conf 99989999999988069985999997699-86233214999999999719899996557322237---------6--898
Q 001531 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---------L--TSP 779 (1058)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~taaIvit~Ps-~~G~~e~di~eI~~lah~~G~lv~vDgA~~~al~g---------l--~~p 779 (1058)
++.+|+++|+++++ +++++|++++|+ .+|.++ ++++|+++|+++|+++++|+++...... + ...
T Consensus 191 ~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~ 266 (497)
T 3mc6_A 191 TYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266 (497)
T ss_dssp TCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST
T ss_pred CCCCCHHHHHHHHH---HCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 58699999999870---4887999978998887577-8999999999839979997764456666444305667763335
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86677599828953135678888894169998078888889987434789999887788877786411347999999999
Q 001531 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (1058)
Q Consensus 780 g~~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~l~~~lp~~~vg~~~d~~~~~~~~~~~~i~sa~~g~~~~~~~a~a~ 859 (1058)
...|+|+++.++||++. ||+++|++++++.......... . ..+ .+.......+.++. ....++..|+.
T Consensus 267 ~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~g~~--~~~~~~a~~aa 334 (497)
T 3mc6_A 267 RVPGVTSISCDTHKYGF-----APKGSSVIMYRNSDLRMHQYYV-N--PAW--TGGLYGSPTLAGSR--PGAIVVGCWAT 334 (497)
T ss_dssp TSTTCCEEEEETTTTTC-----CCSSCEEEECSSHHHHTTTSCC-B--TTC--TTSCBCCSSSCSSC--BHHHHHHHHHH
T ss_pred CCCCCCEEEECCHHHCC-----CCCCCEEEEECCHHHHHHHHCC-C--CCC--CCCCCCCCCCCCCC--CCHHHHHHHHH
T ss_conf 67897189989524157-----7888315886378887530102-6--665--57776786756377--64269999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99974311999999999999999999860-09923426887620279985465434589999999999998992226887
Q 001531 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (1058)
Q Consensus 860 l~~lG~eGl~~~~~~~~~~a~yl~~~L~~-~~~i~~~g~~g~~~~e~iv~~~~~~~~~gi~~~diak~L~~~Gi~~~~~~ 938 (1058)
+..++.+|+.+..++..++++++.++|++ +..+...++ +....+.+... +.+..++.++|.++||.+....
T Consensus 335 l~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~--~~~~~v~~~~~------~~~~~~l~~~L~~~Gi~v~~~~ 406 (497)
T 3mc6_A 335 MVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN--PRYSVISFSSK------TLNIHELSDRLSKKGWHFNALQ 406 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC--CCSSEEEEECT------TTTHHHHHHHHHTTTCBCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC--CCEEEEEEECC------CCCHHHHHHHHHHCCEEEECCC
T ss_conf 999828789999999999999999999850999899668--87148999679------9899999999996897986678
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898997999727899999999999999999999997
Q 001531 939 WPVPGTLMIEPTESESKEELDRYCDALISIREEIAQ 974 (1058)
Q Consensus 939 ~P~~~~Lri~pt~~~t~eeid~fi~aL~~i~~e~~~ 974 (1058)
+ +..+|++++ ..+++++|+++++|+++++++.+
T Consensus 407 ~--~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 407 K--PVALHMAFT-RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp S--SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred C--CCEEEEEEE-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9--976899985-89999999999999999999983
No 6
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=1.00 E-value=1 Score=245.13 Aligned_cols=385 Identities=16% Similarity=0.168 Sum_probs=262.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHH
Q ss_conf 89986688899999999999982174576754224424115776101104446523336699993111011899999999
Q 001531 559 LTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (1058)
Q Consensus 559 ~~~p~~~~~~se~e~~r~~~~l~~~~~~~~~~~i~lGs~t~~~~~~~~~~~~~~~~f~~~~P~~p~e~~~G~~~~i~el~ 638 (1058)
..+| ..+.++.++++.++++...+.....+...+|+.....+.....+...+..+.+.+++.+ ..+++..++..+++
T Consensus 69 ~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~le~~l~ 145 (514)
T 3mad_A 69 ARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHP-DLWPSTAKFEAEVV 145 (514)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCT-TTCHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHH
T ss_conf 7889--88999999999999987446888889846888518997799999999999852577654-46858999999999
Q ss_pred HHHHHHHCCCC---EE--EECCCHHHHHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCHHHHHHCCCEEEEECCCCC
Q ss_conf 99998729992---20--3048658999999999999999-709999988999499977659888757969999918999
Q 001531 639 EWLCTITGFDS---FS--LQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (1058)
Q Consensus 639 ~~Lael~G~~~---~~--l~~~sGa~ge~a~Llair~y~~-~~G~~~r~~ILvp~saHgt~pa~a~~~G~~vv~V~~d~~ 712 (1058)
+++++++|++. .. +..++|+++...++.+++.+.. .+|. ++++|+++...|..+...+...|++++.++++++
T Consensus 146 ~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~-~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~ 224 (514)
T 3mad_A 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGI-TAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDAD 224 (514)
T ss_dssp HHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCC-SSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTT
T ss_pred HHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCC
T ss_conf 999997297976677646985857999999999999876653699-8776999675024789999975974699610899
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC------CC----CCCCC
Q ss_conf 9989999999988069985999997699-8623321499999999971989999655732223------76----89886
Q 001531 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV------GL----TSPGY 781 (1058)
Q Consensus 713 g~iD~e~L~~~i~~~~~~taaIvit~Ps-~~G~~e~di~eI~~lah~~G~lv~vDgA~~~al~------gl----~~pg~ 781 (1058)
+.+|+++|+++++ +++++|++++|+ .+|.+. ++++|+++|+++|+++++|+++..... |. .....
T Consensus 225 ~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~ 300 (514)
T 3mad_A 225 YRADVAAMREAIT---PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRL 300 (514)
T ss_dssp SCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTS
T ss_pred CCCCHHHHHHHHC---CCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 8798999999865---1988999807888885646-89999999998199599963323321003776188887643457
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67759982895313567888889416999807888888998743478999988778887778641134799999999999
Q 001531 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (1058)
Q Consensus 782 ~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~l~~~lp~~~vg~~~d~~~~~~~~~~~~i~sa~~g~~~~~~~a~a~l~ 861 (1058)
.|+|++++++||++. ||+++|++++++.......... ..+|. +.......+.++. ....++.+|+.+.
T Consensus 301 ~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~gs~--~~~~~~a~~aal~ 368 (514)
T 3mad_A 301 EGVTSVSADTHKYGY-----GAKGTSVILYRRPDLLHYQYFI---AADWP--GGLYFSPTFAGSR--PGALSATAWAAML 368 (514)
T ss_dssp TTCCEEEECTTTTTC-----CCSSCEEEEESSHHHHTTTCEE---ESSCT--TCSEEESSSCSSC--CHHHHHHHHHHHH
T ss_pred CCCCEEEECCHHCCC-----CCCCEEEEEEECHHHHCCCCCC---CCCCC--CCCCCCCCCCCCC--CHHHHHHHHHHHH
T ss_conf 898689989100368-----8998279999477883013344---65667--7766687557787--4478999999999
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 97431199999999999999999986009923426887620279985465434589999999999998992226887898
Q 001531 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (1058)
Q Consensus 862 ~lG~eGl~~~~~~~~~~a~yl~~~L~~~~~i~~~g~~g~~~~e~iv~~~~~~~~~gi~~~diak~L~~~Gi~~~~~~~P~ 941 (1058)
.++.+++.+..++..++++++.++|++...+...++.. . .+.+... +.+..++.++|.++||.++...+
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--~-~~~~~~~------~~~~~~l~~~L~~~Gi~v~g~~~-- 437 (514)
T 3mad_A 369 SLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPL--W-VIAVASD------ELNIYQVMEEMAGRGWRLNGLHR-- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS--S-EEEEECS------SSCHHHHHHHHHTTTCBCEEETT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCE--E-EEEEECC------CCCHHHHHHHHHHCCCEECCCCC--
T ss_conf 97487899999999999999999985089959957976--9-9998189------99999999999966978525778--
Q ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9979997278-99999999999999999999997
Q 001531 942 PGTLMIEPTE-SESKEELDRYCDALISIREEIAQ 974 (1058)
Q Consensus 942 ~~~Lri~pt~-~~t~eeid~fi~aL~~i~~e~~~ 974 (1058)
++.+|++++. .++++++|+++++|+++++++.+
T Consensus 438 ~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 438 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9869999715879999999999999999999983
No 7
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=244.73 Aligned_cols=391 Identities=13% Similarity=0.152 Sum_probs=278.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCC--CCCCCCCCC
Q ss_conf 89999999999998919999887652029984224788988889899999999999998607--86332--114999999
Q 001531 102 HNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASM--NKVYK--SFIGMGYYN 177 (1058)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~sE~e~~~~~~~la~~--n~~~~--~~lG~g~~~ 177 (1058)
-||++++++++||+.++.+..++|+.. +|... ...+|| +.++++.+++++++++... +..+. +|.|..+++
T Consensus 2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~ 76 (497)
T 3mc6_A 2 GSPFLRGTVEKEVTKVKQSIEDELIRS-DSQLM--NFPQLP--SNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76 (497)
T ss_dssp ------------------------------CCC--CCSSCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCC--CCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC
T ss_conf 998367899999999999998742577-66620--026789--8998999999999998650389888999884463789
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECCHHHHHHHHHHHHCCC----
Q ss_conf 98909999988819976434598735785479999999999999851999--752576043589999999981110----
Q 001531 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ---- 251 (1058)
Q Consensus 178 ~~~p~~i~~~i~~~~~~~t~ytpyq~eisqG~l~~l~e~q~~ia~LtG~~--~anasl~d~~taa~ea~~~a~~~~---- 251 (1058)
. +.+.. .+.+.-..+..+++++++.++|..+...++++++++++|++ ..++.+++|+|.++..++.+.+..
T Consensus 77 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 77 G--DDLIH-LQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp C--HHHHH-HHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 3--67999-99999997753278882207579999999999999984899889849983737899999999999888753
Q ss_pred CC-CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC---------HHHHC-CCCCEEEEEEECCC-CCEEECCHHHHH
Q ss_conf 69-99899993999987999999843389919999182---------01102-39997599998489-951232679999
Q 001531 252 KG-KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYPG-TEGEVLDYGDFI 319 (1058)
Q Consensus 252 ~~-~~d~viv~~~~Hps~~~~~~~~a~~~gi~v~~~~~---------~~l~~-i~~~t~~vvv~~pn-~~G~i~di~eI~ 319 (1058)
++ ++++|+++...|+++...++. .|++++.++. ++|++ +++++++|++++|+ .+|.+.|+++|+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYY----FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHH----SCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHH----CCCEEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 899776499957740789999998----5982799951764586999999998704887999978998887577899999
Q ss_pred HHHHHCCCEEEEEECCCCC-----------CCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCC
Q ss_conf 9998669699999266553-----------578--999854422999067423543678997058999703334119981
Q 001531 320 KNAHANGVKVVMATDLLAL-----------TIL--KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (1058)
Q Consensus 320 ~~ah~~gal~iV~a~~~sl-----------g~l--~~pg~~GaDi~vgs~k~lg~P~~~GGP~~G~l~~~~~~~r~lpgr 386 (1058)
++||++|++++|| +.++. +.+ ......|+|++++++++++ +||+++|+++++++..+.....
T Consensus 230 ~la~~~g~~livD-~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l----~~~~~~g~~~~~~~~~~~~~~~ 304 (497)
T 3mc6_A 230 KIAQKYKLPLHVD-SCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG----FAPKGSSVIMYRNSDLRMHQYY 304 (497)
T ss_dssp THHHHTTCCEEEE-TTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTT----CCCSSCEEEECSSHHHHTTTSC
T ss_pred HHHHHHCCEEEEE-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHC----CCCCCCEEEEECCHHHHHHHHC
T ss_conf 9999839979997-7644566664443056677633356789718998952415----7788831588637888753010
Q ss_pred EEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-C
Q ss_conf 786633289985206631221111111346887540-46899999999999819031999999999999999999723-9
Q 001531 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT-AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-L 464 (1058)
Q Consensus 387 ivG~s~d~~g~~~~~l~lqtreqhirRekaTsnict-~~~l~a~~aa~y~~~~g~~Gl~~ia~~~~~~a~~l~~~L~~-~ 464 (1058)
+. .+..+.. .++.+++. ............+..++.+|++++.+++.++++++++.|++ +
T Consensus 305 ~~---~~~~~~~----------------~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 365 (497)
T 3mc6_A 305 VN---PAWTGGL----------------YGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI 365 (497)
T ss_dssp CB---TTCTTSC----------------BCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CC---CCCCCCC----------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 26---6655777----------------6786756377642699999999998287899999999999999999998509
Q ss_pred CCEEECCCCCCCEEEEECCC--HHHHHHHHHHCCCEEEEC-CCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 98697499974479995399--999999999859623001-699399993269999999999999819
Q 001531 465 GTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (1058)
Q Consensus 465 G~~~v~~~~~~~~v~i~~~~--~~~i~~~L~~~GI~~~~~-~~~~iris~~e~~t~edid~li~~l~~ 529 (1058)
++++++..+....+.+..++ ..++.+.|.++||.++.. .+..+|++++ .+|++|+++++++|+.
T Consensus 366 ~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 366 PDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp TTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCEEEEEEE-CCCHHHHHHHHHHHHH
T ss_conf 998996688714899967998999999999968979866789976899985-8999999999999999
No 8
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=1.00 E-value=1 Score=239.35 Aligned_cols=383 Identities=11% Similarity=0.020 Sum_probs=256.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHH
Q ss_conf 9986688899999999999982174576-754224424115776101104446523336699993111011899999999
Q 001531 560 THPVFNKYHTEHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (1058)
Q Consensus 560 ~~p~~~~~~se~e~~r~~~~l~~~~~~~-~~~~i~lGs~t~~~~~~~~~~~~~~~~f~~~~P~~p~e~~~G~~~~i~el~ 638 (1058)
.+| .++.++.++++.+.++..++... .....+++ +...+...+.+.. ..+-+++++ +.+++..+++.+++
T Consensus 17 ~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~v~e~~~~----a~~~~~~~~-~~~~~~~~l~~~~~ 87 (452)
T 2dgk_A 17 RFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ--TWDDENVHKLMDL----SINKNWIDK-EEYPQSAAIDLRCV 87 (452)
T ss_dssp SCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC--CCCCHHHHHHHHH----TTTCBTTCT-TTCHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEC--CCCHHHHHHHHHH----HHCCCCCCH-HHCHHHHHHHHHHH
T ss_conf 878--89999999999999985578987667897067--7764999999999----861578973-33765999999999
Q ss_pred HHHHHHHCCCCE------EEECCCHHHHHHHHHHHHHHHHH----HCCCC-CCCEEEECCCCCCCCHHHHHHCCCEEEEE
Q ss_conf 999987299922------03048658999999999999999----70999-99889994999776598887579699999
Q 001531 639 EWLCTITGFDSF------SLQPNAGAAGEYAGLMVIRAYHK----ARGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (1058)
Q Consensus 639 ~~Lael~G~~~~------~l~~~sGa~ge~a~Llair~y~~----~~G~~-~r~~ILvp~saHgt~pa~a~~~G~~vv~V 707 (1058)
+++++++|++.. .+..++|+.++..++++++.... .+|.. .+++|+++. .|.++...+.+.|++++.|
T Consensus 88 ~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v 166 (452)
T 2dgk_A 88 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREI 166 (452)
T ss_dssp HHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCHHHHHHHHHCCCEEEEE
T ss_conf 999998489933356886499387899999999999999987887548887782799888-7399999998769457997
Q ss_pred CCCC-CCCCCHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHC------CCEEEEECCCCCCCCCC-CC
Q ss_conf 1899-99989999999988069985999997699-8623321499999999971------98999965573222376-89
Q 001531 708 GTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-TS 778 (1058)
Q Consensus 708 ~~d~-~g~iD~e~L~~~i~~~~~~taaIvit~Ps-~~G~~e~di~eI~~lah~~------G~lv~vDgA~~~al~gl-~~ 778 (1058)
++++ ++.+|+++|+++++ ++|++|++++|+ .+|.++ |+++|+++|+++ |+++|+|+|+......+ ..
T Consensus 167 ~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~ 242 (452)
T 2dgk_A 167 PMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242 (452)
T ss_dssp CCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred ECCCCCCEECHHHHHHHHH---HCCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf 4288887397999999986---6888999975886882307-99999999999865107897279974517778774085
Q ss_pred C-----CCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC-CC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 8-----86677599828953135678888894169998078-88-888---99874347899998877888777864113
Q 001531 779 P-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (1058)
Q Consensus 779 p-----g~~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~-l~-~~l---p~~~vg~~~d~~~~~~~~~~~~i~sa~~g 848 (1058)
+ ...++|++++++||++ ++|+++|++++++. +. ..+ +... +. .. ....... + ..+
T Consensus 243 ~~~~~~~~~~~d~~~~~~hK~~-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~-~--r~~ 307 (452)
T 2dgk_A 243 DIVWDFRLPRVKSISASGHKFG-----LAPLGCGWVIWRDEEALPQELVFNVDYL-GG-----QI-GTFAINF-S--RPA 307 (452)
T ss_dssp TCCCSTTSTTEEEEEEETTTTT-----CCCSSCEEEEESSGGGSCGGGCEEECCT-TC-----CE-EECCSCC-S--CBC
T ss_pred CCHHHCCCCCCCEEEECCCCCC-----CCCCCEEEEEECCHHHHHHHHCCCCCCC-CC-----CC-CCCCCCC-C--CHH
T ss_conf 4242227888737987763356-----8988868999859999788744686534-89-----98-8756078-9--724
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 47999999999999743119999999999999999998600--9923426887620279985465434589999999999
Q 001531 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (1058)
Q Consensus 849 ~~~~~~~a~a~l~~lG~eGl~~~~~~~~~~a~yl~~~L~~~--~~i~~~g~~g~~~~e~iv~~~~~~~~~gi~~~diak~ 926 (1058)
..++..|+.+..+|.+|+.+..++...+++++.++|++. +++..++...+..+.+.|.++... ..+.+..++.++
T Consensus 308 --~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~~~~~~l~~~ 384 (452)
T 2dgk_A 308 --GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-DPGYTLYDLSER 384 (452)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC-CCSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCC-CCCCCHHHHHHH
T ss_conf --89999999999973999999999999999999999974899699437888887689999955864-344799999999
Q ss_pred HHHCCCCCCCCCCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899222688789----8997999727899999999999999999999997
Q 001531 927 LMDYGFHGPTMSWP----VPGTLMIEPTESESKEELDRYCDALISIREEIAQ 974 (1058)
Q Consensus 927 L~~~Gi~~~~~~~P----~~~~Lri~pt~~~t~eeid~fi~aL~~i~~e~~~ 974 (1058)
|.++||.++....| ..+.+|++++..+|++|+|+|+++|++++++++.
T Consensus 385 L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 385 LRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp HHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9964986213507866378289999945888899999999999999999983
No 9
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=1.00 E-value=1 Score=238.78 Aligned_cols=388 Identities=12% Similarity=0.080 Sum_probs=248.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHCHHHHHHH
Q ss_conf 9986688899999999999982174576754224424115776101---1044465233366999931110118999999
Q 001531 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT---EMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (1058)
Q Consensus 560 ~~p~~~~~~se~e~~r~~~~l~~~~~~~~~~~i~lGs~t~~~~~~~---~~~~~~~~~f~~~~P~~p~e~~~G~~~~i~e 636 (1058)
.+| ..+.++.+++++++++...+.... +..++++......+.. +++ ..+.+-+.++. +.+++..+++.+
T Consensus 81 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l----~~~~n~~~~~~-~~s~~~~~le~~ 152 (515)
T 2jis_A 81 ELR--SQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRII----TESLNTSQYTY-EIAPVFVLMEEE 152 (515)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHHSCCTT-STTEESSSCCCCCHHHHHHHHH----HHHHCCCTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCHHHHHHHHH----HHHHCCCCCCH-HHCHHHHHHHHH
T ss_conf 789--899999999999999961899899-9994777227998899999999----99865577864-446678999999
Q ss_pred HHHHHHHHHCCCCE-EEECCCHHHHHHHHHHHHHHHH----HHCCCC--CCCEEEECCCCCCCCHHHHHHCCC---EEEE
Q ss_conf 99999987299922-0304865899999999999999----970999--998899949997765988875796---9999
Q 001531 637 LGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYH----KARGDH--HRNVCIIPVSAHGTNPATAAMCGM---KIVS 706 (1058)
Q Consensus 637 l~~~Lael~G~~~~-~l~~~sGa~ge~a~Llair~y~----~~~G~~--~r~~ILvp~saHgt~pa~a~~~G~---~vv~ 706 (1058)
+++|+++++|++.. .+..++|+.+++.++.+++.+. ..+|.. ++.+|+++...|.++...+...|+ +++.
T Consensus 153 ~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~ 232 (515)
T 2jis_A 153 VLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRV 232 (515)
T ss_dssp HHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEE
T ss_pred HHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 99999998489998869858828999999999999875577642766667869997887618999999975999883899
Q ss_pred ECCCCCCCCCHHHHHHHHHHC---CCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCC-----
Q ss_conf 918999998999999998806---9985999997699-8623321499999999971989999655732223768-----
Q 001531 707 VGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----- 777 (1058)
Q Consensus 707 V~~d~~g~iD~e~L~~~i~~~---~~~taaIvit~Ps-~~G~~e~di~eI~~lah~~G~lv~vDgA~~~al~gl~----- 777 (1058)
|++++++.+|+++|++++++. +.++++|++++|+ .+|.++ ++++|+++|+++|+|+|+|+|+..+.....
T Consensus 233 v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~ 311 (515)
T 2jis_A 233 VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHL 311 (515)
T ss_dssp ECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGG
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHCCCEEEEEHHHHHHHHHCHHHHHH
T ss_conf 86499986989999999999996899747999968999987856-79999999998399699855325688859423865
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC--CCCC----CCCCCCCCCCCC-CCCCCCCCCCCC-CCCCHHH
Q ss_conf 9886677599828953135678888894169998078--8888----899874347899-998877888777-8641134
Q 001531 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPF----LPSHPVVSTGGI-PAPEKSQPLGTI-AAAPWGS 849 (1058)
Q Consensus 778 ~pg~~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~--l~~~----lp~~~vg~~~d~-~~~~~~~~~~~i-~sa~~g~ 849 (1058)
..+..++|++++++||+|+.| .|+|++++++. +.+. .+....+...+. ..+ ...+..+ ++..++
T Consensus 312 ~~g~~~aD~v~~s~hK~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~--~~~~~~~~~~rr~~- 383 (515)
T 2jis_A 312 LDGIQRADSVAWNPHKLLAAG-----LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVAL--DTGDKVVQCGRRVD- 383 (515)
T ss_dssp GTTGGGCSEEEECTTSTTCCC-----SCCEEEEESCCSCHHHHHHCC---------CCSCGGG--CCGGGCSCSSCCCC-
T ss_pred CCCCCCCCEEEECCCCCCCCC-----CCEEEEEEECHHHHHHHHHCCCCHHCCCCCCCCCCCC--CCCCCCCCCCCCCC-
T ss_conf 379865898998750025998-----7736788847388999874489600167765656657--87888888888520-
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEECCCCCCCCEEEEEECCCCCCC---CCCC-----
Q ss_conf 7999999999999743119999999999999999998600--99234268876202799854654345---8999-----
Q 001531 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNT---AGIE----- 919 (1058)
Q Consensus 850 ~~~~~~a~a~l~~lG~eGl~~~~~~~~~~a~yl~~~L~~~--~~i~~~g~~g~~~~e~iv~~~~~~~~---~gi~----- 919 (1058)
....|+.++.+|.+|+.+..++...+++++.++|++. +++. ++ +....++|...+-... ...+
T Consensus 384 ---al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~f~~~p~~~~~~~~~~~~~~~l 456 (515)
T 2jis_A 384 ---CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV--ME--PEFVNVCFWFVPPSLRGKQESPDYHERL 456 (515)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES--SC--CSSSEEEEEECCGGGTTCTTSTTHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE--CC--CCEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf ---9999999999849999999999999999999997338997996--79--8705999998575434433434679999
Q ss_pred ---HHHHHHHHHHCCCCCCC-CCCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ---99999999989922268-8789-899799972-7899999999999999999999
Q 001531 920 ---PEDVAKRLMDYGFHGPT-MSWP-VPGTLMIEP-TESESKEELDRYCDALISIREE 971 (1058)
Q Consensus 920 ---~~diak~L~~~Gi~~~~-~~~P-~~~~Lri~p-t~~~t~eeid~fi~aL~~i~~e 971 (1058)
...+.++|.+.|+.... ..++ ..+.+|+++ +..++++|+|+++++|+++.++
T Consensus 457 ~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 457 SKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999996597999977988963899999289999999999999999999954
No 10
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=1.00 E-value=1 Score=237.74 Aligned_cols=389 Identities=12% Similarity=0.088 Sum_probs=252.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CC-CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHH
Q ss_conf 9986688899999999999982174576754224424115776--10-11044465233366999931110118999999
Q 001531 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN--AT-TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (1058)
Q Consensus 560 ~~p~~~~~~se~e~~r~~~~l~~~~~~~~~~~i~lGs~t~~~~--~~-~~~~~~~~~~f~~~~P~~p~e~~~G~~~~i~e 636 (1058)
.+| ..+.++.+++++++++...+... .+..++|....... .. .+++...+.. +...| +.+++..+++.+
T Consensus 68 ~~p--~~~~~~~~~~~~~~~~~~~~~~~-~~p~f~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~---~~~p~~~~le~~ 139 (511)
T 3vp6_A 68 ELS--DHPESLEQILVDCRDTLKYGVRT-GHPRFFNQLSTGLDIIGLAGEWLTSTANT--NMFTY---EIAPVFVLMEQI 139 (511)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCT-TSTTEESSSSCCCCHHHHHHHHHHHHHCC--CSSCT---TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCCC---CCCCHHHHHHHH
T ss_conf 999--89999999999999986544778-99981586469986899999999987456--77770---228038999999
Q ss_pred HHHHHHHHHCCCC---EEEECCCHHHHHHHHHHHHHHHH----HHCCC--CCCCEEEECCCCCCCCHHHHHHCCC---EE
Q ss_conf 9999998729992---20304865899999999999999----97099--9998899949997765988875796---99
Q 001531 637 LGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAMCGM---KI 704 (1058)
Q Consensus 637 l~~~Lael~G~~~---~~l~~~sGa~ge~a~Llair~y~----~~~G~--~~r~~ILvp~saHgt~pa~a~~~G~---~v 704 (1058)
+.+|+++++|++. ..++.++|+.++..++++++... ..+|. .++++|+++..+|.++...+.+.|+ ++
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~ 219 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 219 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999998389987880698984599999999999987423666537666887389987973699999999859997747
Q ss_pred EEECCCCCCCCCHHHHHHHHHHC---CCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC-
Q ss_conf 99918999998999999998806---9985999997699-862332149999999997198999965573222376898-
Q 001531 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779 (1058)
Q Consensus 705 v~V~~d~~g~iD~e~L~~~i~~~---~~~taaIvit~Ps-~~G~~e~di~eI~~lah~~G~lv~vDgA~~~al~gl~~p- 779 (1058)
+.+++|+++.+|+++|++++++. +..+.+|++++|+ .+|.++ ++++|+++|+++|+|+|+|+|+..+.. ..|
T Consensus 220 ~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd-~l~~I~~ia~~~~~~lhvD~a~~~~~~--~~~~ 296 (511)
T 3vp6_A 220 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLL--MSRK 296 (511)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGG--GCTT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCCHHHHH--HCHH
T ss_conf 9960587776299999999998886699847999956888885440-299999999985998999851245676--4901
Q ss_pred ------CCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC-CCCC----CCCCCCCCCCCC-CCCC-CCCCCCCCCCCC
Q ss_conf ------86677599828953135678888894169998078-8888----899874347899-9988-778887778641
Q 001531 780 ------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPF----LPSHPVVSTGGI-PAPE-KSQPLGTIAAAP 846 (1058)
Q Consensus 780 ------g~~GaDi~~~s~hKtl~~P~g~GGPg~G~i~~~~~-l~~~----lp~~~vg~~~d~-~~~~-~~~~~~~i~sa~ 846 (1058)
|..++|+++++.||+|+.|. +.|++.+++. +... .+..+.....++ ..+. ..+... ++..
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~--~~r~ 369 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQ--CGRH 369 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSC--SSCC
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCCC-----CEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf 04333687448889988400358986-----7699999388999988536974025766556665576677777--8972
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEECCCCCCCCEEEEEECCCCCCC-CCC-----
Q ss_conf 1347999999999999743119999999999999999998600--99234268876202799854654345-899-----
Q 001531 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNT-AGI----- 918 (1058)
Q Consensus 847 ~g~~~~~~~a~a~l~~lG~eGl~~~~~~~~~~a~yl~~~L~~~--~~i~~~g~~g~~~~e~iv~~~~~~~~-~gi----- 918 (1058)
..+...|++++.+|.+|+.+..++...+++|+++.|++. +++... ..+....++|...+.... .+.
T Consensus 370 ----~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~--~~p~~~~v~f~~~p~~~~~~~~~~~~~ 443 (511)
T 3vp6_A 370 ----VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFN--GEPEHTNVCFWYIPQSLRGVPDSPQRR 443 (511)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSS--SCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEEEECCCCCCCCCCHHHH
T ss_conf ----68999999999876999999999999999999999856898799865--999768999998675224455545678
Q ss_pred -----CHHHHHHHHHHCCCCCCCCCC-CC-CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -----999999999989922268878-98-99799972-78999999999999999999999
Q 001531 919 -----EPEDVAKRLMDYGFHGPTMSW-PV-PGTLMIEP-TESESKEELDRYCDALISIREEI 972 (1058)
Q Consensus 919 -----~~~diak~L~~~Gi~~~~~~~-P~-~~~Lri~p-t~~~t~eeid~fi~aL~~i~~e~ 972 (1058)
...++.++|.++|+......+ +. .+.+|+++ +..++.+|||+++++++++.+.+
T Consensus 444 ~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 444 EKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999956979999788489628999991699999999999999999997765
Done!