Your job contains 1 sequence.
>001532
MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI
RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVN
IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK
GTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK
KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK
RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD
KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT
VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ
PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH
NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV
CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP
DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL
VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV
KKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLE
TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL
GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV
SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY
YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGFP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001532
(1058 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 4348 0. 1
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 3113 0. 1
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 3045 1.5e-317 1
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 3044 1.8e-317 1
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 3043 2.6e-317 1
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 3041 4.0e-317 1
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 3041 4.0e-317 1
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 3037 1.1e-316 1
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 3012 4.9e-314 1
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 1781 3.3e-312 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 2973 6.7e-310 1
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 2896 9.7e-302 1
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 2842 5.1e-296 1
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 1419 2.1e-295 3
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 1419 2.1e-295 3
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 2794 6.2e-291 1
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 2665 2.9e-277 1
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 2496 2.4e-259 1
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 1764 1.4e-183 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 1424 2.2e-174 2
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 1405 1.4e-172 2
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 1404 1.8e-172 2
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 1404 1.8e-172 2
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 1404 1.8e-172 2
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 1401 3.7e-172 2
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 1401 3.7e-172 2
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 1401 3.7e-172 2
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 1402 1.3e-171 2
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 1402 1.3e-171 2
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 1393 1.1e-170 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 1371 4.3e-169 2
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 1404 2.4e-168 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 860 2.4e-165 4
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 1584 1.0e-162 1
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 836 2.6e-162 4
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 836 2.6e-162 4
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 843 1.3e-157 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 815 6.6e-157 4
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 1412 5.6e-154 2
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 835 3.9e-147 3
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 835 3.9e-147 3
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 1025 1.8e-103 1
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 866 2.2e-103 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 651 2.3e-97 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 939 2.3e-94 1
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 757 1.1e-91 2
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 658 2.1e-89 3
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 522 1.5e-86 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 647 1.3e-81 3
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 685 2.4e-81 2
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 688 4.4e-81 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 673 1.1e-79 2
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 684 1.2e-79 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 684 1.7e-79 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 494 5.2e-79 4
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 494 5.2e-79 4
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 684 3.9e-78 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 639 1.4e-77 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 639 1.4e-77 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 670 6.3e-77 2
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 680 5.1e-75 2
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 368 5.4e-71 3
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 677 9.3e-69 2
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 684 8.5e-67 1
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 564 2.5e-57 3
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 603 2.3e-55 1
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 545 1.2e-51 1
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 388 6.1e-46 4
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 358 5.1e-41 5
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 251 9.9e-41 5
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 162 1.4e-35 6
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 218 1.7e-34 5
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 337 1.9e-34 4
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 337 1.9e-34 4
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 337 1.9e-34 4
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 337 1.9e-34 4
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 382 3.9e-34 1
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 162 7.8e-34 6
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 149 8.1e-34 6
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 155 2.7e-33 7
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 153 1.9e-31 6
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 151 4.9e-31 7
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 224 8.0e-31 4
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 348 1.7e-30 1
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 153 2.5e-29 6
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 153 2.5e-29 6
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 166 2.0e-28 4
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 163 3.0e-27 6
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 156 1.8e-25 5
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 291 2.1e-24 1
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 156 1.1e-22 6
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 151 1.9e-09 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 171 8.3e-09 3
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 4348 (1535.6 bits), Expect = 0., P = 0.
Identities = 826/1071 (77%), Positives = 938/1071 (87%)
Query: 1 MGLMQVE-GSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTG 59
MGL Q + D+ DK+KL+AP+KS DKFQL+PEFLKVRGLVKQHLDSFNYF+N G
Sbjct: 1 MGLDQEDLDLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVG 60
Query: 60 IRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILV 119
I KIV+AN RI S +DPSI+LRFK VR+G+PS+ E +NPHMCRL+DMTYAAPI V
Sbjct: 61 IHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFV 120
Query: 120 NIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
NIEYV GSH K K++V+IGR+PIMLRSCRCVL+GKDE ELARLGECPLDPGGYFII
Sbjct: 121 NIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFII 180
Query: 180 KGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFV 239
KGTEKVLLIQEQLSKNR+IID+DKKGNINA IQMEK K+YL L++FV
Sbjct: 181 KGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFV 240
Query: 240 KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
KKIPI++V+KAMGMESDQE+VQMVGRDPR+SA LLPSIEEC + + TQ++AL+YLE KV
Sbjct: 241 KKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKV 300
Query: 300 KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
K+ ++G+PP +++GRA SILRD+FLA+VPV +NNFR KCFYV VMLRRM+EAMLNKDAMD
Sbjct: 301 KKISYGTPP-EKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMD 359
Query: 360 DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
DKDYVGNKRLELSGQL+SLLFEDLFKTM+SE K VD IL+KP R+SRFD SQ + +DS
Sbjct: 360 DKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSR 419
Query: 419 --ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
I++GLERTLSTGNFD+KRF+MHRKGMTQVL RLSFIG++G +T++SPQFEKSRKVSGP
Sbjct: 420 YSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGP 479
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGPL+++CY LGV DLE+LS
Sbjct: 480 RSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSA 539
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
EELH P+SFLVI NGLILGKH RP+ FA+ +R+LRRAGKIGEFVSVF NEKQ CVY+ASD
Sbjct: 540 EELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASD 599
Query: 597 GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
GRVCRPLVIADKGISR+K+HHMKEL DGVR+FDDF+R+GLIEYLDVNEENNALIALYE
Sbjct: 600 VGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYES 659
Query: 657 DATP-----------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
D T DTTHIEIEPFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNI
Sbjct: 660 DGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 719
Query: 706 AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
A+NQL RMD+LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS+SGYDIEDAIVM
Sbjct: 720 AYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVM 779
Query: 766 NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEI 825
NKSSLDRGFGRCIV+KK A++QKY N T+DRIL P RTGP AE+MQILDDDGLA PGEI
Sbjct: 780 NKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDDDGLATPGEI 839
Query: 826 IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 885
I+PND+YINK+ P++T S +DS+YR AR+ +KGP+GET VVDRVALCSDK G
Sbjct: 840 IRPNDIYINKQVPVDTVTKFTSAL--SDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQ 897
Query: 886 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 945
LCIK++IRHTRRPELGDKFSSRHGQKGVCG I+QQEDFPFSE GICPDLIMNPHGFPSRM
Sbjct: 898 LCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRM 957
Query: 946 TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1005
TVGKMIELLG KAGVSCGRFHYGSAFGE SGHAD VE+IS TLV+ GFSY+GKD++YSGI
Sbjct: 958 TVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGI 1017
Query: 1006 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+G P++AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+++NGG
Sbjct: 1018 SGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGG 1068
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 3113 (1100.9 bits), Expect = 0., P = 0.
Identities = 600/1052 (57%), Positives = 779/1052 (74%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+KLA PV ++ DK+QLLP FLKV+GLVKQHLDS+NYFV+ ++KIV+AN+++ S ++P
Sbjct: 38 KKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF 97
Query: 79 FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ D+R+G P T D + ++PH CRL D+TY A I V+IEY +G K + +
Sbjct: 98 YLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRG----KQVVRRR 153
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+V IGR+P+MLRS +CVL GK+E E+A L ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+
Sbjct: 154 NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRI 213
Query: 198 IIDTD-KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
I++ + KKG A + + GK+YL N IPI+VV+KAMG++SD
Sbjct: 214 IVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSD 273
Query: 257 QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGS---PPNDR 311
QE+ ++V G + Y L PSIEECA L+IYT ++ALEY+ +VK G+ PP++
Sbjct: 274 QEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEE 333
Query: 312 EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
A +L V LA++ V N FRPK Y+ +M RR++ AM++ +DD+DYVGNKRLEL
Sbjct: 334 ---ALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLEL 390
Query: 372 SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL-SQFIVR-DSITVGLERTLST 429
+GQL++LLFEDLFK S+++ +D +L KP R+ FD +Q V D IT G+ R LST
Sbjct: 391 AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALST 450
Query: 430 GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
GN+ +KRFKM R G+T VL+RLS+I LG MTR++ QFEK+RKVSGPR+LQ SQ+GMLC
Sbjct: 451 GNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCT 510
Query: 490 CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
DTPEGEACGLVKNLALMTH+TTDEEE P+I L Y G+ED+ ++SG ELH+ ++LV
Sbjct: 511 SDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYL 570
Query: 550 NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
NG ILG R P F RKLRR+GKI F+ +F+N QR V+I++DGGR+CRPL+I
Sbjct: 571 NGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQN 630
Query: 610 GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
G+ +++ H++ L +G F+DFL++GL+EY+DVNEEN++LI++YE D TPDTTH+EIEP
Sbjct: 631 GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEP 690
Query: 670 FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
FTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++
Sbjct: 691 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVK 750
Query: 730 TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
T+TIEL+GYDKL AGQNATVA+MSYSGYDIEDA+V+NKSS+DRGFGRC V K++ I +K
Sbjct: 751 TKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRK 810
Query: 790 YANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETR-GSI 845
Y N T DRI P R TG + +++DDGLA G ++P +Y+NK++P SI
Sbjct: 811 YPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSI 870
Query: 846 -MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 904
+ T +S Y++ TYK P E +D+V L + + IK L+R TRRPELGDKF
Sbjct: 871 TLGHTQTVESGYKATPMTYKAP--EPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKF 928
Query: 905 SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
SSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKMIELL GK GV G
Sbjct: 929 SSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGT 988
Query: 965 FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1024
YG+ FG VE S LV+HG++Y+GKDM+ SGITG L+AYIFMGPIYYQKL
Sbjct: 989 LEYGTCFG-----GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKL 1043
Query: 1025 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
KHMV+DKMHAR GPR +LTRQPTEGR+R+GG
Sbjct: 1044 KHMVMDKMHARARGPRAVLTRQPTEGRSRDGG 1075
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 3045 (1077.0 bits), Expect = 1.5e-317, P = 1.5e-317
Identities = 587/1043 (56%), Positives = 754/1043 (72%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++ AAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 ERAAAPVSAVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI ++ KAMG+ESDQ
Sbjct: 190 IVEADRKGTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST-FGSPPNDREGRAF 316
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R +G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEAR 309
Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
+L L +V V NFR KC Y AVM+RR++ A ++ +DD+DY GNKRLEL+GQL+
Sbjct: 310 ELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLL 368
Query: 377 SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +KR
Sbjct: 369 SLLFEDLFKKFNSELKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 427
Query: 437 FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
FKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 428 FKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 487
Query: 497 ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
ACGLVKNLALMTH+TTD E+GP+I L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 ACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV 547
Query: 557 HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
R + + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 IRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTN 607
Query: 617 HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
HM+EL G R+F+DFL EGL+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 KHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVC 667
Query: 677 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL+
Sbjct: 668 AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELI 727
Query: 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T D
Sbjct: 728 DFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFD 787
Query: 797 RILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 853
+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ + +
Sbjct: 788 KVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQ 847
Query: 854 SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKGV
Sbjct: 848 PQYKDVPVTYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGV 905
Query: 914 CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
CG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 CGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG- 964
Query: 974 PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1033
V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMH
Sbjct: 965 ----GSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMH 1020
Query: 1034 ARGSGPRVMLTRQPTEGRARNGG 1056
AR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 ARARGPRAVLTRQPTEGRSRDGG 1043
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 3044 (1076.6 bits), Expect = 1.8e-317, P = 1.8e-317
Identities = 588/1044 (56%), Positives = 753/1044 (72%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966 -----GSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
HAR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGG 1044
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 3043 (1076.2 bits), Expect = 2.6e-317, P = 2.6e-317
Identities = 588/1044 (56%), Positives = 753/1044 (72%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966 -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
HAR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGG 1044
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 3041 (1075.5 bits), Expect = 4.0e-317, P = 4.0e-317
Identities = 588/1044 (56%), Positives = 753/1044 (72%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966 -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
HAR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGG 1044
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 3041 (1075.5 bits), Expect = 4.0e-317, P = 4.0e-317
Identities = 589/1044 (56%), Positives = 752/1044 (72%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EELAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP+I L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966 -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
HAR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGG 1044
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 3037 (1074.1 bits), Expect = 1.1e-316, P = 1.1e-316
Identities = 588/1044 (56%), Positives = 751/1044 (71%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP+I L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966 -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
HAR GPR +LTRQPTEGR+R+GG
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGG 1044
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 3012 (1065.3 bits), Expect = 4.9e-314, P = 4.9e-314
Identities = 586/1043 (56%), Positives = 749/1043 (71%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
Q+LAAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN++I S DP
Sbjct: 14 QQLAAPVDTVEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK E ++L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I+D D+KG + A + +++G+ YL N + PI ++ KAMG+ESDQ
Sbjct: 190 IVDQDRKGTVGASVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
E+VQM+G + A PS+EEC I+TQ +AL Y+ KV+R + E R
Sbjct: 250 EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNKVRRQRMWGGQME-EAR--E 306
Query: 318 ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
+L L +VPV NFR KC Y+AVM+RR++ A + +DD+DY GNKRLEL+GQL+S
Sbjct: 307 LLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLS 365
Query: 378 LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
LLFEDLFK SE++K D I+ K R+++FD+ + + +D IT G+ +STGN+ +KRF
Sbjct: 366 LLFEDLFKKFNSELKKIADQIIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRF 424
Query: 438 KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
KM R+G+TQVL+RLSFI LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEA
Sbjct: 425 KMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEA 484
Query: 498 CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
CGLVKNLALMTH+TTD E+GP+I L + LGVED+ LL GEEL P FLV NG ILG
Sbjct: 485 CGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVI 544
Query: 558 RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
R + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I G +K
Sbjct: 545 RDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKNK 604
Query: 618 HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
H++EL G R+F+DFL E L+EYLDVNEEN+ IALYE + DTTH+EIEPFT+LGV A
Sbjct: 605 HIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCA 664
Query: 678 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
GLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQRP++ T+TIEL+
Sbjct: 665 GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELID 724
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T D+
Sbjct: 725 FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDK 784
Query: 798 ILRP--D-RTGPGAERMQILDDDGLAAPG-EIIKPNDVYINKESPLETRGSIMSPTGQTD 853
++ P D T R ILD DG+ +PG E ++ V +NK P T+ +
Sbjct: 785 VMGPMLDAETRKPIWRHSILDADGICSPGSEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ 844
Query: 854 SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
+YR +YKG +++V + S+ +K L+R TRRPE+GDKFSSRHGQKGV
Sbjct: 845 PQYREVPVSYKGATDS--YIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGV 902
Query: 914 CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
CG IV QED PF + GICPD+IMNPHG+PSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 903 CGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG- 961
Query: 974 PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1033
V+ + E L+++G++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMH
Sbjct: 962 ----GSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMH 1017
Query: 1034 ARGSGPRVMLTRQPTEGRARNGG 1056
AR GPR +LTRQPTEGR+R+GG
Sbjct: 1018 ARARGPRAVLTRQPTEGRSRDGG 1040
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 1781 (632.0 bits), Expect = 3.3e-312, Sum P(2) = 3.3e-312
Identities = 340/559 (60%), Positives = 423/559 (75%)
Query: 498 CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
CGLVKN ALM+HVTTD+ EGPL+ L Y LGV+D+ L++GEEL++ N++LV+ NG I+G H
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 558 RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
P F +RK+RRAG+I EFVS+ N+ Q+ + +A DGGR+CRP++I D R+ +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 618 HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
H+++L DG+R+FDDF+REG+IEYLDVNEEN++ +A E P TTH+EIEPFT+LG +A
Sbjct: 1090 HIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTMLGCVA 1149
Query: 678 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
GLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLV+ QRPL TRTI+L+
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
+ KL AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV+KK +K+ N TSDR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269
Query: 798 ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857
I P + +LD DG+A PGE+ + + +NK SPL T + +P DS Y+
Sbjct: 1270 IFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYK 1329
Query: 858 SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 917
S+ YK + +D+V L S + L IK L+R TRRPELGDKFSSRHGQKGVCG I
Sbjct: 1330 SSYMGYKYDN--PAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGII 1387
Query: 918 VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977
V+QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKAGV G+F +G+ FG
Sbjct: 1388 VKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFG----- 1442
Query: 978 ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037
D VE+IS+ L+ GFSY GKD + SG+TG PL +IF GPI+YQKLKHMV+DKMHAR
Sbjct: 1443 GDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARAR 1502
Query: 1038 GPRVMLTRQPTEGRARNGG 1056
GP V LTRQPTEGRAR GG
Sbjct: 1503 GPTVTLTRQPTEGRARGGG 1521
Score = 1238 (440.9 bits), Expect = 3.3e-312, Sum P(2) = 3.3e-312
Identities = 241/490 (49%), Positives = 335/490 (68%)
Query: 13 EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
++L + KL +K V +K++L+P F+K RGLVKQH+DSFN+F+N ++KIV+AN+R+ +
Sbjct: 21 DELYNISKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA 80
Query: 73 GIDPSIFLRFKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
DPS F+RF D+ +G P+ T D + S +L P CRL DMTY+API VNIEY + K
Sbjct: 81 ENDPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRN----K 136
Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
+ K DV IG IPIMLRS CVL K ++A LGECP+DPGGYFI++G EKV+L EQ
Sbjct: 137 QIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQ 196
Query: 192 LSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
LSKNR+II+ D KG +A + ++ K+YL N F + IP+ +V+K M
Sbjct: 197 LSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGM 256
Query: 252 GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG-SPP 308
G+E+DQE+ Q+VG D + + PS+EEC ++T +AL+YL ++K R +G
Sbjct: 257 GVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNK 316
Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
+ A IL V L +VPV NFR K Y+++M+RR++ A +K +DDKDY GNKR
Sbjct: 317 KTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKR 376
Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
+ELSGQL+SLLFED FK SE++K+VD ++K +R+ DL + I D+IT G +S
Sbjct: 377 IELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAIS 436
Query: 429 TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
+G +++KRF+M R G++QVL+RLS+I +G MTR+ QFEK+RKV+GPR+LQPSQWGMLC
Sbjct: 437 SGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLC 496
Query: 489 PCDTPEGEAC 498
P DTPEGEAC
Sbjct: 497 PSDTPEGEAC 506
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 2973 (1051.6 bits), Expect = 6.7e-310, P = 6.7e-310
Identities = 585/1045 (55%), Positives = 749/1045 (71%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+KL + + DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI++AN I+S +DP
Sbjct: 32 KKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEF 91
Query: 79 FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ D+R+G+ S + + L P H CRL DMTY+API V+IEY +G + M K
Sbjct: 92 YLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNI---IMHK- 145
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
DV IGR+PIMLRS +C+LY DE+++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 146 DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 205
Query: 198 IIDTD-KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
I++ D KKG + A + + GK+YL N ++IPI +V+KA G+ SD
Sbjct: 206 IVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSD 265
Query: 257 QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
E++Q+V G D Y + ++EE + LDIYTQ++ALEY+ KVK +EG
Sbjct: 266 LEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEG-- 323
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+ +A++ V +FR K Y+A+M RR+V AM N +DD+DYVGNKRLEL+GQL
Sbjct: 324 IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQL 383
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
+SLLFEDLFK ++ + ++D +L KP+R+ +D LS + ++IT GL R +STGN+
Sbjct: 384 ISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 443
Query: 434 VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
+KRFKM R G+T VL+RLS+I LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC DTP
Sbjct: 444 LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 503
Query: 494 EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
EGEACGLVKNLALMTH+TTD+EE P+ LCY LGVED+ L+ LH ++ V NG +
Sbjct: 504 EGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHL--NYGVYLNGTL 561
Query: 554 LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
+G R P F R LRR GK+ EF+S++ N Q V+IA+DGGR+CRPL+I G SR
Sbjct: 562 IGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSR 621
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
+K+ H+++LLDG FDDFL+ GL+EYLDVNEEN++ IALYE D P TH+EIEPFTIL
Sbjct: 622 VKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTIL 681
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ R+D+LLYL+ YPQ+P++ T+TI
Sbjct: 682 GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTI 741
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC +K T + ++YAN
Sbjct: 742 ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANH 801
Query: 794 TSDRI--LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 851
T D I +R D G + Q L DGL G ++ +YINK P + +
Sbjct: 802 TQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVN 861
Query: 852 TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 911
++YR A Y+GP E +D+V + N IK L+R RRPELGDKFSSRHGQK
Sbjct: 862 VQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQK 919
Query: 912 GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
GVCG IV+QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV G YG+ F
Sbjct: 920 GVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF 979
Query: 972 GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1031
G +E +S+ LV GF+Y+GKDM+YSGITG LQAYIF GPIYYQKLKHMVLDK
Sbjct: 980 G-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1034
Query: 1032 MHARGSGPRVMLTRQPTEGRARNGG 1056
MHAR GPR +LTRQPTEGR+R+GG
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGG 1059
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 2896 (1024.5 bits), Expect = 9.7e-302, P = 9.7e-302
Identities = 574/1054 (54%), Positives = 741/1054 (70%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+KL + + DK+ LLP FLKV+GLVKQHLDS+NYFV+ ++KI++AN+ ++S +DP
Sbjct: 29 KKLTDEINTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEF 88
Query: 79 FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
++++ D+R+G S + GV E L PH CRL D+TY+API V++EY +G + + N
Sbjct: 89 YVKYLDIRVGHKSTSKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHN 144
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
D+ IGR+P+MLRS +C+L G EA +A++ ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 145 DLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRI 204
Query: 198 IIDTD-KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
I++ D KKG + A + + K+YL N + IPI++++KA G+ SD
Sbjct: 205 IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIILKAAGIVSD 264
Query: 257 QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
E++Q+V G D Y L + + EE A L+++TQ++AL Y+ +VK G+P +
Sbjct: 265 LEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQE 324
Query: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
+ +A++ V + FR K Y+A M RR+V AM N +DD+DYVGNKRLEL+GQ
Sbjct: 325 GIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 384
Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
L+SLLFEDLFK S+ + +D +L KPSR+S FD LS I ++IT+GL R +STGN+
Sbjct: 385 LMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 444
Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
+KRFKM R G+T VL+RLS+I LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC DT
Sbjct: 445 SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 504
Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
PEGEACGLVKNLALMTH+TTD+EE P+ LC LG E + L LH +F V NG
Sbjct: 505 PEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPIFALDSATLHVDGNFGVYLNGT 564
Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
++G R P F R LRR GK+ F+S++ N + V+IA+DGGR+CRPL+I + G S
Sbjct: 565 LIGTTRFPVKFVHDFRHLRRVGKVSAFISIYTNTHHQAVHIATDGGRICRPLIIVENGKS 624
Query: 613 RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD----TTHIEIE 668
++ H+ +L++ SFDDFL GL+EYLDVNEEN++LIALYE D T + TH+EIE
Sbjct: 625 KVTAEHLAKLINQEWSFDDFLTHGLVEYLDVNEENDSLIALYEDDITANPGAIVTHLEIE 684
Query: 669 PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ R+D+LLY +VYPQ+P++
Sbjct: 685 PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 744
Query: 729 TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC VV+K T +
Sbjct: 745 KTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLK 804
Query: 789 KYANSTSDRI--LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 846
KY N T D + +R D + Q L DGL G I V+ NK P + S +
Sbjct: 805 KYPNHTQDILAGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTL 864
Query: 847 SPTGQTDSR----YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 902
Q + R +R A YKGP E +D+V + N IK L+R TRRPELGD
Sbjct: 865 G--AQQEQRAAESHREAPAFYKGP--EPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGD 920
Query: 903 KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 962
KFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV
Sbjct: 921 KFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKAGVLN 980
Query: 963 GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1022
G YG+ FG +E +S+ L++ GFSY+GKDM+YSGITG LQAYIF GPIYYQ
Sbjct: 981 GSLEYGTCFG-----GSKLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQ 1035
Query: 1023 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
KLKHMVLDKMHAR GPR +LTRQPTEGR+R+GG
Sbjct: 1036 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1069
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 2842 (1005.5 bits), Expect = 5.1e-296, P = 5.1e-296
Identities = 560/1065 (52%), Positives = 747/1065 (70%)
Query: 1 MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
MG VE + D D + + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N I
Sbjct: 6 MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63
Query: 61 RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
+KIV+AN+ + SG DP +L++ DVR+G+P + DG +++ PH CRL D TY+API
Sbjct: 64 KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122
Query: 119 VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
V+IEY +G T++ +++N+++IGR+P+MLR C L GK E EL++L ECPLDPGGYF+
Sbjct: 123 VDIEYTRG--TQR--IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 178
Query: 179 IKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQF 238
++G EKV+LIQEQLS N+++ + D G + + + GK YL N
Sbjct: 179 VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 237
Query: 239 VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
IPI+V+ KA+G+ SDQE+ ++G D + S+ + NL ++TQ++ALEY+ K
Sbjct: 238 TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297
Query: 299 --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
VKR + E A +L LA+VPV N N + K YV++M+RR++ A L+K
Sbjct: 298 LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 357 AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
DD+DY GNKRLEL+G L+S++FEDLFK M E++ D + K ++++FD+ + +
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKV-KAAQFDVVKHMRA 415
Query: 417 DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
IT GLE +S+GN+ +KRFKM R G+TQVL+RLS+I LG MTRV+ QFEK+RKVSGP
Sbjct: 416 AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 475
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + + GVED+ +SG
Sbjct: 476 RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 535
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
++NPN FLV NG +LG K +R +RR G++G +VSV + QRC+YI +D
Sbjct: 536 NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 595
Query: 597 GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
GGR+CRP VI + +K+HH+ EL G+R FDDFL +GLIEYLDVNEEN++ IA E
Sbjct: 596 GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 655
Query: 657 DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ R+DSL
Sbjct: 656 QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 715
Query: 717 LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
+Y LVYP P++ ++TIEL +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 716 MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 775
Query: 777 CIVVKKYTAINQKYANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYI 833
C+V K ++YAN T DRI+ P + T + +LD DG+ APGE ++ + I
Sbjct: 776 CLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMI 835
Query: 834 NKESPLETRGSIMSPT-GQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 891
NKE P T M+P GQ+ Y + +YKGP E ++RV + ++ D IK L
Sbjct: 836 NKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKIL 890
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK +
Sbjct: 891 LRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTL 950
Query: 952 ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1011
ELLGGKAG+ G+FHYG+AFG VE I L +HGF+Y GKD YSGITG PL+
Sbjct: 951 ELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLE 1005
Query: 1012 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
AYI+ GP+YYQKLKHMV DKMHAR GP+ +LTRQPT+GR+R GG
Sbjct: 1006 AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGG 1050
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 1419 (504.6 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 273/483 (56%), Positives = 365/483 (75%)
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
+FR K + +M+RR++++ NK+ +DDKDY GNKRLEL+GQL+SLLFEDL+K ++
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 393 KTVDIILSKPSRS---SRF------------DLSQFIVRDSITVGLERTLSTGNFDVKRF 437
K +D LSK +S S+ D+ + + +D IT G++ +STGN+++KRF
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 438 KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
KM + G++QVL+RLSFI +G MTR++ QFEK RKVSGPRALQPSQWG+LCPCDTPEGE+
Sbjct: 675 KMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGES 734
Query: 498 CGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
CGLVKNLALMTHVT D E LI + Y LGVED + L+GEE++ F VI NG++LG
Sbjct: 735 CGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLGV 794
Query: 557 HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
H+RP+ F +R LRR GKIG+FVS++ N +YI++DGGR+CRPL+I + G S++
Sbjct: 795 HKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIIENGKSKLLP 854
Query: 617 HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
H+K L +G +F D L+ +IE++DVNE+NN LIAL E D + TTH+EI+P TILGV+
Sbjct: 855 QHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLSTTHLEIDPLTILGVV 914
Query: 677 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ R D+LLYLLVYPQ+PL+ ++TIE +
Sbjct: 915 AGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFI 974
Query: 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+DRGFGRC+ ++K++ +KY N ++D
Sbjct: 975 NFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSND 1034
Query: 797 RIL 799
+L
Sbjct: 1035 IVL 1037
Score = 795 (284.9 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 170/397 (42%), Positives = 252/397 (63%)
Query: 25 VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRF 82
V ++ +K++LLP +LKV+GLVKQH++S+NYF+ I+ I+ A N I S ID ++ F
Sbjct: 236 VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEF 295
Query: 83 KDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
D+ +G PS+ + + KL P +CR D+TY+API V++EYV+G+ + + KN+V IG
Sbjct: 296 LDITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGN----SIITKNNVEIG 351
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
R+P+MLRS CVL K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I++ D
Sbjct: 352 RLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMD 411
Query: 203 KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
K NI A I + K+YL N F++ I + ++++AMG ESDQE+ QM
Sbjct: 412 IKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQM 471
Query: 263 VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPP-----NDRE 312
+G Y +L S+ E N +I T AL Y+ K++ + F S N+++
Sbjct: 472 IGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKD 531
Query: 313 --GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
L V L+++ + +FR K + +M+RR++++ NK+ +DDKDY GNKRL
Sbjct: 532 IIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRL 591
Query: 370 ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
EL+GQL+SLLFEDL+K ++K +D LSK +S+
Sbjct: 592 ELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSN 628
Score = 664 (238.8 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 139/292 (47%), Positives = 185/292 (63%)
Query: 766 NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEI 825
NKSS + + VKK + ++ +N + D I + + LD DG+A+ G +
Sbjct: 1082 NKSSYNNNVSKIDNVKKDSYGHKNISNESKDDIKK--MANKDIRKYHSLDMDGVASIGYL 1139
Query: 826 IKPNDVYINKESPLETRGSIMSPTGQTD-SRYRSARQTYKGPDGETCVVDRVALCSDKNG 884
IK +Y+NK SP + + G+ D + ++ YK +D++ + G
Sbjct: 1140 IKEGQLYVNKFSPKNIKDHVKD-IGKVDINDFKINEIKYKSV--YPSYIDKIIFTENSEG 1196
Query: 885 DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 944
K ++R TR PELGDKFSSRHGQKGV G +V QED PF+E GICPDLIMNPHGFPSR
Sbjct: 1197 LKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSR 1256
Query: 945 MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1004
MTVGK++EL+ KA V G + YGS F SG E I+E L ++GF+ + K+++YSG
Sbjct: 1257 MTVGKLLELVASKAAVMDGEYKYGSIF---SG--TPFEEIAEILFRYGFNCSSKELLYSG 1311
Query: 1005 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+TG PL+ YIFMGPIYYQKLKHMV DK+HAR GPR +LTRQPTEGR++ GG
Sbjct: 1312 LTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGG 1363
Score = 50 (22.7 bits), Expect = 7.1e-62, Sum P(2) = 7.1e-62
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 598 GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYL 641
G+ RP ++A S +KE +K D + DFL L+ ++
Sbjct: 505 GKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHI 548
Score = 41 (19.5 bits), Expect = 6.3e-61, Sum P(2) = 6.3e-61
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFA 564
LLS EL+N N + L +GK RP+ A
Sbjct: 483 LLSLYELYNENIKTNLDALLYIGKKIRPRLLA 514
Score = 38 (18.4 bits), Expect = 4.9e-79, Sum P(2) = 4.9e-79
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 669 PFTILGVIAGLIPYPH 684
PFT G+ LI PH
Sbjct: 1236 PFTESGICPDLIMNPH 1251
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 1419 (504.6 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 273/483 (56%), Positives = 365/483 (75%)
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
+FR K + +M+RR++++ NK+ +DDKDY GNKRLEL+GQL+SLLFEDL+K ++
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 393 KTVDIILSKPSRS---SRF------------DLSQFIVRDSITVGLERTLSTGNFDVKRF 437
K +D LSK +S S+ D+ + + +D IT G++ +STGN+++KRF
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 438 KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
KM + G++QVL+RLSFI +G MTR++ QFEK RKVSGPRALQPSQWG+LCPCDTPEGE+
Sbjct: 675 KMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGES 734
Query: 498 CGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
CGLVKNLALMTHVT D E LI + Y LGVED + L+GEE++ F VI NG++LG
Sbjct: 735 CGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLGV 794
Query: 557 HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
H+RP+ F +R LRR GKIG+FVS++ N +YI++DGGR+CRPL+I + G S++
Sbjct: 795 HKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIIENGKSKLLP 854
Query: 617 HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
H+K L +G +F D L+ +IE++DVNE+NN LIAL E D + TTH+EI+P TILGV+
Sbjct: 855 QHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLSTTHLEIDPLTILGVV 914
Query: 677 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ R D+LLYLLVYPQ+PL+ ++TIE +
Sbjct: 915 AGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFI 974
Query: 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+DRGFGRC+ ++K++ +KY N ++D
Sbjct: 975 NFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSND 1034
Query: 797 RIL 799
+L
Sbjct: 1035 IVL 1037
Score = 795 (284.9 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 170/397 (42%), Positives = 252/397 (63%)
Query: 25 VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRF 82
V ++ +K++LLP +LKV+GLVKQH++S+NYF+ I+ I+ A N I S ID ++ F
Sbjct: 236 VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEF 295
Query: 83 KDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
D+ +G PS+ + + KL P +CR D+TY+API V++EYV+G+ + + KN+V IG
Sbjct: 296 LDITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGN----SIITKNNVEIG 351
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
R+P+MLRS CVL K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I++ D
Sbjct: 352 RLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMD 411
Query: 203 KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
K NI A I + K+YL N F++ I + ++++AMG ESDQE+ QM
Sbjct: 412 IKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQM 471
Query: 263 VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPP-----NDRE 312
+G Y +L S+ E N +I T AL Y+ K++ + F S N+++
Sbjct: 472 IGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKD 531
Query: 313 --GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
L V L+++ + +FR K + +M+RR++++ NK+ +DDKDY GNKRL
Sbjct: 532 IIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRL 591
Query: 370 ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
EL+GQL+SLLFEDL+K ++K +D LSK +S+
Sbjct: 592 ELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSN 628
Score = 664 (238.8 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 139/292 (47%), Positives = 185/292 (63%)
Query: 766 NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEI 825
NKSS + + VKK + ++ +N + D I + + LD DG+A+ G +
Sbjct: 1082 NKSSYNNNVSKIDNVKKDSYGHKNISNESKDDIKK--MANKDIRKYHSLDMDGVASIGYL 1139
Query: 826 IKPNDVYINKESPLETRGSIMSPTGQTD-SRYRSARQTYKGPDGETCVVDRVALCSDKNG 884
IK +Y+NK SP + + G+ D + ++ YK +D++ + G
Sbjct: 1140 IKEGQLYVNKFSPKNIKDHVKD-IGKVDINDFKINEIKYKSV--YPSYIDKIIFTENSEG 1196
Query: 885 DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 944
K ++R TR PELGDKFSSRHGQKGV G +V QED PF+E GICPDLIMNPHGFPSR
Sbjct: 1197 LKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSR 1256
Query: 945 MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1004
MTVGK++EL+ KA V G + YGS F SG E I+E L ++GF+ + K+++YSG
Sbjct: 1257 MTVGKLLELVASKAAVMDGEYKYGSIF---SG--TPFEEIAEILFRYGFNCSSKELLYSG 1311
Query: 1005 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+TG PL+ YIFMGPIYYQKLKHMV DK+HAR GPR +LTRQPTEGR++ GG
Sbjct: 1312 LTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGG 1363
Score = 50 (22.7 bits), Expect = 7.1e-62, Sum P(2) = 7.1e-62
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 598 GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYL 641
G+ RP ++A S +KE +K D + DFL L+ ++
Sbjct: 505 GKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHI 548
Score = 41 (19.5 bits), Expect = 6.3e-61, Sum P(2) = 6.3e-61
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFA 564
LLS EL+N N + L +GK RP+ A
Sbjct: 483 LLSLYELYNENIKTNLDALLYIGKKIRPRLLA 514
Score = 38 (18.4 bits), Expect = 4.9e-79, Sum P(2) = 4.9e-79
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 669 PFTILGVIAGLIPYPH 684
PFT G+ LI PH
Sbjct: 1236 PFTESGICPDLIMNPH 1251
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 2794 (988.6 bits), Expect = 6.2e-291, P = 6.2e-291
Identities = 551/1056 (52%), Positives = 741/1056 (70%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+ L P+ + DK+ LLP FLKV+GLVKQH+DS+NY V ++KIV +++ I S +D +
Sbjct: 91 KSLTDPISTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNF 150
Query: 79 FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
+++F D+ +G P + + + PH CRL D TYAAPI V+ EY++G +
Sbjct: 151 YIKFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRG----R 206
Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
+ + V IGR+P+MLRS +CVL K A++ L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 207 QRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQ 266
Query: 192 LSKNRVIIDTD-KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
LSKNR+I++TD KK + A I ++K ++Y+ N + IPI++++KA
Sbjct: 267 LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYVKHNVLSEDIPIVILLKA 326
Query: 251 MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSP 307
MG+ +D+E++ +V G D Y + EE + ++TQ++AL+++ ++K R S
Sbjct: 327 MGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQM-SY 385
Query: 308 PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
A + V ++++ V + NFRPK YVA M RR++ A + +DD+DY+GNK
Sbjct: 386 RRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNK 445
Query: 368 RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
RLEL+GQL++LLFEDLFK +++ +D +L+K +R FD I S IT G+ R
Sbjct: 446 RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNR 505
Query: 426 TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
+STGN+ +KRF+M R G+T VL+RLS+I LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 506 AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 565
Query: 486 MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
M+C DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+E++ P S+
Sbjct: 566 MICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSY 625
Query: 546 LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
+ NG + RRPK F + R+LRR G+I EFVS+++N QR V++A+D GR+CRPL+
Sbjct: 626 TISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 685
Query: 606 IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
I + G SR+K+HH+++L DG FDDFL +GL+EY+DVNEEN++LIA+YE D T TTH+
Sbjct: 686 IVEDGKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDITDTTTHM 745
Query: 666 EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ R+DS+LYL+VYPQ+
Sbjct: 746 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 805
Query: 726 PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
P++ +RTIEL YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY
Sbjct: 806 PMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 865
Query: 786 INQKYANSTSDRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETR 842
+ Y+N T D IL P + P + +L+ DGLAA GE + +VYINK +P ++
Sbjct: 866 NMKSYSNGTKD-ILSPPTYENDAP-IRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSM 923
Query: 843 GSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
S M S G+ S Y TYK PD +D+V + + +N + IK L R TRRPE+
Sbjct: 924 SSGMPGSDAGRPIS-YNPTPMTYKLPD--PAYIDKVMISATENENQIIKVLTRQTRRPEV 980
Query: 901 GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
GDKFSSRHGQKGV G IV Q D PF+++GI PD+IMNPHGFPSRMTVGKM+EL+ GKAGV
Sbjct: 981 GDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGV 1040
Query: 961 SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1020
G+ YG+ F SG VE +++TL+ GFSY GKD + SGITG L Y+F GPIY
Sbjct: 1041 LSGQHGYGTCF---SG--TPVEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYVFTGPIY 1095
Query: 1021 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
YQKLKHMV DKMH+R GPR LTRQPTEGR+R+GG
Sbjct: 1096 YQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGG 1131
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 2665 (943.2 bits), Expect = 2.9e-277, P = 2.9e-277
Identities = 533/1081 (49%), Positives = 727/1081 (67%)
Query: 1 MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
M + QV G + + K + P++ DK+ L+P FLKVRGLVKQHL SF++FV I
Sbjct: 1 MTIGQVNGRARIKSECGKDQKCMPLE---DKWLLVPAFLKVRGLVKQHLVSFDHFVQEEI 57
Query: 61 RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVS---EKLNPHMCRLSDMTYAAPI 117
R I+ +N +I S +P+ +L++ D+RIG+PS + +G++ +K+ P CRL DMTY+API
Sbjct: 58 RSIMLSNQKITSDANPNFYLKYLDIRIGKPS-SEEGLNMTHDKITPQECRLRDMTYSAPI 116
Query: 118 LVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYF 177
V+IEY +G+ + K D++IGR+PIMLRS +C+L E ELAR+ ECP DPGGYF
Sbjct: 117 SVDIEYTRGNQR----VFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYF 172
Query: 178 IIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQ 237
++KG+EKV+LIQEQLSKNR+++ + + + M+KGK + NQ
Sbjct: 173 VVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTMKKGKYSVRHNQ 232
Query: 238 FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
+P+ ++ KAMG+ESD ++V +G + +Y + ++EE N +YTQ++AL Y+
Sbjct: 233 LTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTS 292
Query: 298 KVKR---STFGSPPND--------REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
KVK + FGS P +E A L + + ++ + NF+ K Y+ +M R
Sbjct: 293 KVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTR 352
Query: 347 RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
R+++ L ++ +DD+D+ GNKRLEL+G L+SLLFED+FK SE+++ D L K + ++
Sbjct: 353 RLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMK-TMAA 411
Query: 407 RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQ 466
D+ + + +D IT + +STGN+ +KRF+M R G+TQVL+RLS+I LG MTR++
Sbjct: 412 PLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINST 471
Query: 467 FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL 526
FEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLAL++H+TTD +E P++ L
Sbjct: 472 FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNS 531
Query: 527 GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
GVEDL + ++ P + L+ NG+++G P+ +R LRR+G + EFVSV +
Sbjct: 532 GVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSL 591
Query: 587 KQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEE 646
R V+I+SDGGR+CRP +I G + + H++EL +G F+DF+ +G++EYLDVNE
Sbjct: 592 TNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEM 651
Query: 647 NNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
N+ALIA+Y + P+TTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG IA
Sbjct: 652 NDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIA 711
Query: 707 FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
+NQ R+DS++YLL YPQRPL+ ++TIEL ++KL AG N +AVMSYSGYDIEDA+V+N
Sbjct: 712 YNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLN 771
Query: 767 KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQILDDDGLAAPG 823
K+SLDRG+GRC+V K +KY N T DR+L P T + + LD +G+ G
Sbjct: 772 KASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAG 831
Query: 824 EIIKPNDVYINKESPLET--RGSIMSPTGQT------DSRYRSARQTYKGPDGETCVVDR 875
I P INK P+ + G S + T Y+ TYK P +R
Sbjct: 832 ARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPS--YAER 889
Query: 876 VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 935
V L +++ K L+R TRRPELGDKFSSRHGQKGVCG I QQED PF++ G+ PD+I
Sbjct: 890 VLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMI 949
Query: 936 MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 995
MNPHG+PSRMTVGK++ELL GKAGV G +HYG+AFG D V+ + E L G++Y
Sbjct: 950 MNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFG-----GDQVKDVCEELAACGYNY 1004
Query: 996 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1055
GKDM+ SGITG PL AYI+ GPIYYQKLKHMVLDKMHAR GPR LTRQPTEGR+R G
Sbjct: 1005 MGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREG 1064
Query: 1056 G 1056
G
Sbjct: 1065 G 1065
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 2496 (883.7 bits), Expect = 2.4e-259, P = 2.4e-259
Identities = 487/900 (54%), Positives = 636/900 (70%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 11 EQLAAPIPTVDEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 70
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 71 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 126
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 127 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 186
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 187 IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 246
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 247 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 306
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 307 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 365
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 366 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 424
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 425 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 484
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 485 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 544
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 545 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 604
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 605 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 664
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 665 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 724
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 725 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 784
Query: 796 DRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P D T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 785 DKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 844
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 845 QPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 1764 (626.0 bits), Expect = 1.4e-183, Sum P(2) = 1.4e-183
Identities = 344/640 (53%), Positives = 454/640 (70%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + A + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYE 647
Score = 39 (18.8 bits), Expect = 1.4e-183, Sum P(2) = 1.4e-183
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 709 QLCRMDSLLYLLVYPQRPLLTTRTIE 734
+LCR Y++V Q+P +T + +E
Sbjct: 591 RLCRP----YIIVKKQKPAVTNKHME 612
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 1424 (506.3 bits), Expect = 2.2e-174, Sum P(2) = 2.2e-174
Identities = 322/847 (38%), Positives = 488/847 (57%)
Query: 229 GKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLD 284
G+ + + ++K+ IPIM+V +A+G SD++++ + DP ++ PS++E
Sbjct: 259 GQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FV 316
Query: 285 IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
I Q AL ++ + + G R A IL+ L +V V + K F++ M
Sbjct: 317 IQEQNVALNFIGARGAKP--GVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYM 374
Query: 345 LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
+ R++ A L + +DD+D++GNKRL+L+G L++ LF LF+ ++ E++ T ++K
Sbjct: 375 VHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK--- 431
Query: 405 SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
+ F L + +IT GL +L+TGN+ D K+ R G++QVL RL++ TL H+ R
Sbjct: 432 NDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRA 491
Query: 464 SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
+ + K++ PR L +QWGM+CP +TPEG+A GLVKNLALM +++ P++
Sbjct: 492 NSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFL 551
Query: 524 YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSV 582
+E+LE +S + + V NG +G HR P ++KLRR I VS+
Sbjct: 552 EEWSMENLEEVSPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSM 609
Query: 583 FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSF--DDFLREGL 637
+ + R + I +D GRVCRPL+I + +K+ H +KE D + D + G+
Sbjct: 610 VRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGV 669
Query: 638 IEYLDVNEENNALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
+E +D EE ++IA+ D DT TH EI P ILGV A +IP+P HNQSPRNT
Sbjct: 670 VELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNT 729
Query: 693 YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
YQ AMGKQAMG N RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++
Sbjct: 730 YQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAIL 789
Query: 753 SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
SYSGY+ ED+++MN S++DRG R + + Y N+ + I +P R R
Sbjct: 790 SYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHS 849
Query: 813 I---LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
+ LD+DG+ +PG + +DV I K L + +G+ + R A + E
Sbjct: 850 LYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK-RDASTFLRS--SE 906
Query: 870 TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
T +VD+V L + +G+ +K +R R P++GDKF+SRHGQKG G + +QED PF+ G
Sbjct: 907 TGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEG 966
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
+ PD+I+NPH PSRMT+G +IE L GK + G G A P V+ IS L
Sbjct: 967 LTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEI--GDA--TPFNDTVNVQKISGLLC 1022
Query: 990 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1049
++G+ G +++Y+G TG L IF GP YYQ+LKHMV DK+H+R GP M+ RQP E
Sbjct: 1023 EYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPME 1082
Query: 1050 GRARNGG 1056
GRAR+GG
Sbjct: 1083 GRARDGG 1089
Score = 292 (107.8 bits), Expect = 2.2e-174, Sum P(2) = 2.2e-174
Identities = 68/214 (31%), Positives = 118/214 (55%)
Query: 5 QVEGSPKD-EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
++ P D + + D +++A + ++ + +GLV+Q LDSF+ FV +++I
Sbjct: 7 EMVNDPMDGDYIDDSDEISAEAWQEAC-WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRI 65
Query: 64 VR---------ANDRIVSGID-PSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDM 111
V N + + ++ P+ F L+F + + +P+ DG + P+ RL ++
Sbjct: 66 VEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNL 125
Query: 112 TYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPL 171
TYA+P+ V+I V T + V +G++P+MLRS C+L + +L L ECPL
Sbjct: 126 TYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPL 185
Query: 172 DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
DPGGYF+I G+EKVL+ QE+++ N V + + K G
Sbjct: 186 DPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDG 219
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 1405 (499.6 bits), Expect = 1.4e-172, Sum P(2) = 1.4e-172
Identities = 321/839 (38%), Positives = 487/839 (58%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR-TGPGAERM--QILDDDG 818
+++MN+S++DRGF R + + Y K + +P R T G + LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
L APG + +DV I K L E + S T+ RY + ET +VD+V
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 908
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 909 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 968
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 969 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 1024
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1025 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 294 (108.6 bits), Expect = 1.4e-172, Sum P(2) = 1.4e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 148
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 149 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208
Query: 201 TDK 203
K
Sbjct: 209 AKK 211
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 1404 (499.3 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 321/839 (38%), Positives = 486/839 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 255 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 312
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 313 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 370
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 371 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 427
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 428 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 487
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 488 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 547
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 548 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 605
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 606 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 665
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 666 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 725
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 726 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 785
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 786 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 845
Query: 819 LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
L APG + +DV I K L E + S T+ RY + ET +VD+V
Sbjct: 846 LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 901
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 902 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 961
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 962 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 1017
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1018 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1076
Score = 294 (108.6 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 22 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 81
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 82 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 141
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 142 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 201
Query: 201 TDK 203
K
Sbjct: 202 AKK 204
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 1404 (499.3 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 321/839 (38%), Positives = 486/839 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
L APG + +DV I K L E + S T+ RY + ET +VD+V
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 908
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 909 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 968
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 969 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 1024
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1025 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 294 (108.6 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 148
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 149 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208
Query: 201 TDK 203
K
Sbjct: 209 AKK 211
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 1404 (499.3 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 321/839 (38%), Positives = 486/839 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
L APG + +DV I K L E + S T+ RY + ET +VD+V
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 908
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 909 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 968
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 969 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 1024
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1025 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 294 (108.6 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 148
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 149 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208
Query: 201 TDK 203
K
Sbjct: 209 AKK 211
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 1401 (498.2 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 319/838 (38%), Positives = 484/838 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
L APG + +DV I K L + T + RY + ET +VD+V +
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELEGTNR---RYTKRDCSTFLRTSETGIVDQVMV 909
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 998
H PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 970 HAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGN 1025
Query: 999 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 294 (108.6 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 148
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 149 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208
Query: 201 TDK 203
K
Sbjct: 209 AKK 211
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 1401 (498.2 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 319/838 (38%), Positives = 484/838 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
L APG + +DV I K L + T + RY + ET +VD+V +
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELEGTNR---RYTKRDCSTFLRTSETGIVDQVMV 909
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 998
H PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 970 HAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGN 1025
Query: 999 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 294 (108.6 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 148
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 149 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208
Query: 201 TDK 203
K
Sbjct: 209 AKK 211
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 1401 (498.2 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 319/838 (38%), Positives = 484/838 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 255 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 312
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 313 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 370
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 371 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 427
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 428 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 487
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 488 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 547
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 548 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 605
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 606 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 665
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 666 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 725
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 726 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 785
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 786 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 845
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
L APG + +DV I K L + T + RY + ET +VD+V +
Sbjct: 846 LIAPGVRVSGDDVIIGKTVTLPENEDELEGTNR---RYTKRDCSTFLRTSETGIVDQVMV 902
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+NP
Sbjct: 903 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 962
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 998
H PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 963 HAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGN 1018
Query: 999 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1019 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1076
Score = 294 (108.6 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 22 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKF 81
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+ +
Sbjct: 82 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTF 141
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 142 IGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 201
Query: 201 TDK 203
K
Sbjct: 202 AKK 204
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 1402 (498.6 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 324/852 (38%), Positives = 490/852 (57%)
Query: 229 GKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLD 284
G+ + + ++K+ IPIM+V +A+G +D+++++ + DP ++ PS++E
Sbjct: 254 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FV 311
Query: 285 IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
+ Q AL ++ + R G + R A IL+ L +V V + K +++ M
Sbjct: 312 VQEQNVALNFIGARGARP--GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYM 369
Query: 345 LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
+ R++ A L + +DD+D+ GNKRL+L+G L++ LF LFK ++ EV+ + R
Sbjct: 370 VHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID---R 426
Query: 405 SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
F+L I + IT GL +L+TGN+ D K+ R G++QVL RL+F TL H+ RV
Sbjct: 427 GKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRV 486
Query: 464 SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
+ + K++ PR L + WGMLCP +TPEG A GLVKNLALM +++ + P++
Sbjct: 487 NSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 546
Query: 524 YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI--GEFVS 581
+E+LE ++ + + V NG +G HR P+ +RKLRR I E VS
Sbjct: 547 EEWSMENLEEIAPSAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSE-VS 603
Query: 582 VFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREG 636
+ + + R + I +D GR+CRPL+I + G +K+ H++ L + R ++++ + G
Sbjct: 604 MIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASG 661
Query: 637 LIEYLDVNEENNALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQS 688
++EY+D EE +IA+ D D TH EI P ILGV A +IP+P HNQS
Sbjct: 662 VVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS 721
Query: 689 PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
PRNTYQ AMGKQAMG N RMD+L ++L YP +PL+TTR++E + + +L AG N+
Sbjct: 722 PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSI 781
Query: 749 VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR-TGPG 807
VA++ Y+GY+ ED++++N S+++RGF R + + Y K + +P R T G
Sbjct: 782 VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQG 841
Query: 808 AERMQI--LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYK 864
LDDDG+ APG + +DV I K L E + S T + R S T+
Sbjct: 842 MRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDAS---TFL 898
Query: 865 GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 924
+ ET +VD+V L + G K +R R P++GDKF+SRHGQKG CG +QED
Sbjct: 899 R-NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMA 957
Query: 925 FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 984
F+ G+ PD+I+NPH PSRMT+G +IE L GK G + G G A P A V+ I
Sbjct: 958 FTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEI--GDA--TPFNDAVNVQKI 1013
Query: 985 SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1044
S L ++G+ G +++Y+G TG + A +F+GP YYQ+LKHMV DK+H+R GP +L
Sbjct: 1014 STFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 1073
Query: 1045 RQPTEGRARNGG 1056
RQP EGRAR+GG
Sbjct: 1074 RQPMEGRARDGG 1085
Score = 288 (106.4 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 69/179 (38%), Positives = 107/179 (59%)
Query: 42 RGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVRIGQP 90
+GLV+Q LDSF+ F+ +++IV + I SG ++ P L+F+ + + +P
Sbjct: 38 KGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKP 97
Query: 91 S-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIGRIPI 146
+ DG + P+ RL ++TY+AP+ V+I + V+G +T +K IG+IPI
Sbjct: 98 THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKT--FIGKIPI 155
Query: 147 MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
MLRS C+L + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K G
Sbjct: 156 MLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDG 214
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 1402 (498.6 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 318/838 (37%), Positives = 485/838 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 262 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 319
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 320 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 378 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 434
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 435 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 494
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 495 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 554
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 555 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 673 VMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 732
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDG 852
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
L APG + +DV I K L + T + ++ R + ET +VD+V +
Sbjct: 853 LIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTK-RDCSTFLR--TSETGIVDQVMV 909
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 998
H PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 970 HAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGN 1025
Query: 999 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1083
Score = 288 (106.4 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 67/185 (36%), Positives = 108/185 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + +G ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKND 138
+ + + +P+ DG + P+ RL ++TY+AP+ V+I +G +T +K
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKT- 147
Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V
Sbjct: 148 -FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 206
Query: 199 IDTDK 203
+ K
Sbjct: 207 VFAKK 211
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 1393 (495.4 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 318/839 (37%), Positives = 485/839 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 263 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 320
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV-MLRRMVEAM 352
++ + + G R A +L+ L +V V + K +++ M+ R++ A
Sbjct: 321 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAA 378
Query: 353 LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ 412
L + +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 379 LGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLEL 435
Query: 413 FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ +
Sbjct: 436 AIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG 495
Query: 472 KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
K++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+L
Sbjct: 496 KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 555
Query: 532 ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRC 590
E +S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R
Sbjct: 556 EEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE 613
Query: 591 VYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEEN 647
+ I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 614 IRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEE 673
Query: 648 NALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQ
Sbjct: 674 TVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 733
Query: 701 AMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIE 760
AMG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ E
Sbjct: 734 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 793
Query: 761 DAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDD 817
D+++MN+S++DRGF R + + Y K + +P R R I LDDD
Sbjct: 794 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDD 853
Query: 818 GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
GL APG + +DV I K L + T + ++ R + ET +VD+V
Sbjct: 854 GLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTK-RDCSTFLR--TSETGIVDQVM 910
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 911 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 970
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 971 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 1026
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 1027 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1085
Score = 288 (106.4 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 67/185 (36%), Positives = 108/185 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + +G ++ P L+F
Sbjct: 30 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKF 89
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKND 138
+ + + +P+ DG + P+ RL ++TY+AP+ V+I +G +T +K
Sbjct: 90 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKT- 148
Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V
Sbjct: 149 -FIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 207
Query: 199 IDTDK 203
+ K
Sbjct: 208 VFAKK 212
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 1371 (487.7 bits), Expect = 4.3e-169, Sum P(2) = 4.3e-169
Identities = 317/837 (37%), Positives = 479/837 (57%)
Query: 240 KKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
+++PI++V +A+G SD+++++ + DP ++ PS++E I Q AL ++
Sbjct: 265 QEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIG 322
Query: 297 GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
+ + G R A +L+ L +V V + K +++ M+ R++ A L +
Sbjct: 323 SRGAKP--GVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 357 AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
+DD+D+ GNKRL+L+G L++ LF +FK ++ E++ + R F+L I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID---RGKDFNLELAIKT 437
Query: 417 DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
I+ GL+ +L+TGN+ DVK+ R G++QVL RL+F TL H+ RV+ + K++
Sbjct: 438 RIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK 497
Query: 476 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE +S
Sbjct: 498 PRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIS 557
Query: 536 GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
+ + V NG +G H+ P+ + +RKLRR I VS+ + ++R + I
Sbjct: 558 PAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIY 615
Query: 595 SDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALI 651
+D GR+CRPL+I +K +K H+ +L + S+ D + G++EY+D EE ++
Sbjct: 616 TDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVML 675
Query: 652 ALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676 AMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 735
Query: 705 IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED+++
Sbjct: 736 YITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVI 795
Query: 765 MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDGLAA 821
MN+S++DRGF R + + Y K + +P R R I LDDDGL A
Sbjct: 796 MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIA 855
Query: 822 PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 881
PG + DV I K L + T + RY + ET +VD+V + +
Sbjct: 856 PGVRVSGEDVIIGKTVTLPENDDELDSTNR---RYTKRDCSTFLRTSETGIVDQVMVTLN 912
Query: 882 KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 941
+ G K +R R P++GDKF+SRHGQKG CG +QE + GI PD+I+NPH
Sbjct: 913 QEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYIIEGITPDIIINPHAI 972
Query: 942 PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1001
PSRMTVG +IE L GK VS + G A P A V+ +S L ++G+ G +++
Sbjct: 973 PSRMTVGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKVSNLLSEYGYHLRGNEVL 1028
Query: 1002 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR--NGG 1056
Y+G TG L + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R +GG
Sbjct: 1029 YNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRRSDGG 1085
Score = 295 (108.9 bits), Expect = 4.3e-169, Sum P(2) = 4.3e-169
Identities = 68/185 (36%), Positives = 108/185 (58%)
Query: 34 LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRF 82
++ + +GLV+Q LDSF+ F+ +++IV +A + SG ++ P L+F
Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKF 88
Query: 83 KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKND 138
+ + + +P+ DG + P+ RL ++TY+AP+ V+I G ++T +K
Sbjct: 89 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKT- 147
Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V
Sbjct: 148 -FIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 206
Query: 199 IDTDK 203
+ K
Sbjct: 207 VFAKK 211
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 1404 (499.3 bits), Expect = 2.4e-168, Sum P(2) = 2.4e-168
Identities = 321/839 (38%), Positives = 486/839 (57%)
Query: 238 FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
++K+ +PI++V +A+G SD+++++ + DP ++ PS++E I Q AL
Sbjct: 187 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 244
Query: 294 YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
++ + + G R A +L+ L +V V + K +++ M+ R++ A L
Sbjct: 245 FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 302
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ GNKRL+L+G L++ LF +FK ++ EV+ + R F+L
Sbjct: 303 GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID---RGKDFNLELA 359
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K
Sbjct: 360 IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 419
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + P++ +E+LE
Sbjct: 420 LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 479
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCV 591
+S + + V NG +G H+ P+ + +RKLRR I VS+ + ++R +
Sbjct: 480 EISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 537
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENN 648
I +D GR+CRPL+I +K +K+ H+ +L + S+ D + G++EY+D EE
Sbjct: 538 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 597
Query: 649 ALIALYEGD------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
++A+ D A T TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 598 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 657
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 658 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 717
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDG 818
+++MN+S++DRGF R + + Y K + +P R R I LDDDG
Sbjct: 718 SVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG 777
Query: 819 LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 877
L APG + +DV I K L E + S T+ RY + ET +VD+V
Sbjct: 778 LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 833
Query: 878 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
+ ++ G K +R R P++GDKF+SRHGQKG CG +QED PF+ GI PD+I+N
Sbjct: 834 VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 893
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 997
PH PSRMT+G +IE L GK VS + G A P A V+ IS L +G+ G
Sbjct: 894 PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 949
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+++Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GG
Sbjct: 950 NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1008
Score = 255 (94.8 bits), Expect = 2.4e-168, Sum P(2) = 2.4e-168
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 76 PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTT 133
P L+F+ + + +P+ DG + P+ RL ++TY+AP+ V+I + V E+
Sbjct: 7 PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66
Query: 134 MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
+ IG+IPIMLRS C+L G + +L L ECPLDPGGYFII G+EKVL+ QE+++
Sbjct: 67 TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126
Query: 194 KNRVIIDTDK 203
N V + K
Sbjct: 127 TNTVYVFAKK 136
Score = 39 (18.8 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 49 LDSFNYFVNTGIRKIVRANDRIVS 72
LD YF+ G K++ A +++ +
Sbjct: 104 LDPGGYFIINGSEKVLIAQEKMAT 127
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 860 (307.8 bits), Expect = 2.4e-165, Sum P(4) = 2.4e-165
Identities = 191/429 (44%), Positives = 257/429 (59%)
Query: 638 IEYLDVNEENNALI----ALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
+E + NEEN+ + + TH EI P ILGV A +IP+P HNQSPRNTY
Sbjct: 710 LEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 769
Query: 694 QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
Q AMGKQAMG N RMD++ +L YPQ+PL TTR +E + + +L AGQNA VA+
Sbjct: 770 QSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIAC 829
Query: 754 YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER--- 810
YSGY+ ED+++MN+SS+DRG R + + Y +KY S ++ +P RT +
Sbjct: 830 YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGT 889
Query: 811 MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DG 868
LDDDGL APG + DV I K +P+ + GQ + Y S R P
Sbjct: 890 YDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTA-YHSKRDA-STPLRST 944
Query: 869 ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 928
E +VD+V + ++++G +K +R T+ P++GDKF+SRHGQKG G ++ED PF+
Sbjct: 945 ENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAE 1004
Query: 929 GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISET 987
GI PDLI+NPH PSRMTV +IE L K G G+ S D TVE IS+
Sbjct: 1005 GIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNE------GDASPFTDITVEGISKL 1058
Query: 988 LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1047
L +HG+ G +++Y+G TG L A IF GP YYQ+L+HMV DK+HAR GP +LTRQP
Sbjct: 1059 LREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQP 1118
Query: 1048 TEGRARNGG 1056
EGR+R+GG
Sbjct: 1119 VEGRSRDGG 1127
Score = 620 (223.3 bits), Expect = 2.4e-165, Sum P(4) = 2.4e-165
Identities = 167/535 (31%), Positives = 286/535 (53%)
Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
E V IGR+PIMLRS C L E++L +L ECP D GGYFII G+EKVL+ QE+ +
Sbjct: 161 ESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAG 220
Query: 195 NRVIIDTDKKG------NINAXXXXXXXXXXXXXXIQME----KGKMYLLLNQ---FVKK 241
N I+ KK ++ +Q++ +G + ++K+
Sbjct: 221 N--IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQ 278
Query: 242 -IPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIYTQEKALEYLEG 297
IPI+++ +A+G+ D E+++ + D + +L P +E+ I +E AL+++ G
Sbjct: 279 DIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED--GFVIQDRETALDFI-G 335
Query: 298 KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
+ + + G R A IL+ FL ++ K F++ M+ R++ L++
Sbjct: 336 R-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKD 394
Query: 358 MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD 417
DD+D+ G KRL+L+G L++ LF+ LFK + ++ + + + + + F++ I
Sbjct: 395 QDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEE---AHDFNMKLAINAK 451
Query: 418 SITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
+IT GL+ L+TGN+ + K+ R G++QVL R ++ TL H+ R + + K++ P
Sbjct: 452 TITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKP 511
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R L + WG++CP +TPEG+ACGLVKNL+LM+ ++ + P+I+ G+E LE
Sbjct: 512 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVP 571
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
+ +P++ V NG+ G HR P + +R LRR G I VS+ + +++ + I +D
Sbjct: 572 HQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTD 629
Query: 597 GGRVCRPLVIA--DKGIS----RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
GRV RPL I D+ + ++++ H+ +L+ + D EG E DV E
Sbjct: 630 AGRVYRPLFIVEDDESLGHKELKVRKGHIAKLM--ATEYQDI--EGGFE--DVEE 678
Score = 110 (43.8 bits), Expect = 2.4e-165, Sum P(4) = 2.4e-165
Identities = 29/113 (25%), Positives = 58/113 (51%)
Query: 22 AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
+AP+ + D + ++ F + +GLV Q LDSFN FV+ ++ I+ + ++
Sbjct: 22 SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80
Query: 72 -SGIDPSIFLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE 122
I + F + + +P + DGV+ L P RL ++TY++ + V+++
Sbjct: 81 SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVK 133
Score = 77 (32.2 bits), Expect = 2.4e-165, Sum P(4) = 2.4e-165
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 589 RCVYIASDGGRVCRPLVIADKG-ISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLD 642
R ++I D + + KG I+++ +++ G +++ L EGL+EY+D
Sbjct: 635 RPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYID 694
Query: 643 VNEENNALIALYEGDATP----DTTHIEIEP 669
EE + LIA+ D P + ++++P
Sbjct: 695 AEEEESILIAMQPEDLEPAEANEENDLDVDP 725
Score = 38 (18.4 bits), Expect = 2.0e-97, Sum P(3) = 2.0e-97
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 503 NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
N L+ ++ +EEE LI++ EDLE E
Sbjct: 686 NEGLVEYIDAEEEESILIAM----QPEDLEPAEANE 717
Score = 38 (18.4 bits), Expect = 5.9e-94, Sum P(3) = 5.9e-94
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 50 DSFNYFVNTGIRKIVRANDRIVSGI 74
D YF+ G K++ A +R I
Sbjct: 198 DMGGYFIINGSEKVLIAQERSAGNI 222
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
Identities = 359/947 (37%), Positives = 548/947 (57%)
Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
+ IG++PIMLRS C+L D+ +L +GEC D GGYFII G+EKVL+ QE+++ N V
Sbjct: 151 IFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVY 210
Query: 199 I---DTDKKGNINAXXXX---XXXXXXXXXXIQM----EKGKMYLLLN-QFVKK-IPIMV 246
+ K + A ++M KG + + ++K+ +P+++
Sbjct: 211 VFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGPVGIKATVPYIKQDVPVII 270
Query: 247 VMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST 303
V +A+G +D+++++ + +D + L+ PS+EE + I +QE AL+YL GK + ST
Sbjct: 271 VFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEE--SFVIQSQEVALDYL-GK-RGST 326
Query: 304 FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
G+ R A +L+ L +V V K FY + R++ A L + +DD+D+
Sbjct: 327 MGTR-EQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDH 385
Query: 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGL 423
NKRL+L+G L+ LF LFK + +V+ + + K F S + +IT GL
Sbjct: 386 FANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK---DKEFIASSAVKSKTITSGL 442
Query: 424 ERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
+ +L+TGN+ + + G+ QVL RL+F TL H+ R++ + K++ PR L +
Sbjct: 443 KYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTH 502
Query: 484 WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
WG++CP +TPEG+ACGLVKNLA+M++++ P++ E+LE +S +L +
Sbjct: 503 WGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEIS--DLSSIF 560
Query: 544 SFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
S IF NG+ +G H +P +R LRR G + VSV + +++ + + +D GR CR
Sbjct: 561 SATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPGRCCR 620
Query: 603 PLVIADKGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDVNEENNALIALYEGDATP- 660
PL + +IK+ H+ +L++ + D L EG++EY+D EE LIA+ D P
Sbjct: 621 PLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM 680
Query: 661 ------DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
T TH EI P ILG+ +IP+P HNQSPRNTYQ AMGKQAMG N RM
Sbjct: 681 PNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRM 740
Query: 714 DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
D++ ++L YPQ+PL+TTR++E + + +L AGQN VA+ YSGY+ ED++++N+S++DRG
Sbjct: 741 DTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRG 800
Query: 774 FGRCIVVKKYTAINQKYANSTSDRILRPDR-TGPGAER--MQILDDDGLAAPGEIIKPND 830
R + + Y +K + + +P+R T G + +DDDGL APG + +D
Sbjct: 801 LFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDD 860
Query: 831 VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 890
+ I K +PL + P + ++ R + + ET +VD+V L + G K
Sbjct: 861 IIIGKTTPLPPSDDDLGPKTRRHTK-RDSSTALRS--SETGIVDQVILTTSGEGFKFCKV 917
Query: 891 LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 950
+R R P++GDKFSSRHGQKG CG +QED PF+ GI PD+I+NPH PSRMT+G++
Sbjct: 918 RVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQL 977
Query: 951 IELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCP 1009
IE L GK S G G+ + D TVE+IS+ L K G+ G +++Y+G TG
Sbjct: 978 IECLLGKVSASTGDE------GDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRR 1031
Query: 1010 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+ A IF+GP YYQ+LKHMV DK+H+R GP +LTRQP EGR+R+GG
Sbjct: 1032 MDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGG 1078
Score = 769 (275.8 bits), Expect = 9.1e-76, P = 9.1e-76
Identities = 201/666 (30%), Positives = 343/666 (51%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDR------IVSGID 75
D + ++ + + +GLV+Q LDSF+ F+ +++I+ R + +VS
Sbjct: 22 DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNV 81
Query: 76 PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHT---E 130
+ ++F + + +P+ +DGVS+++ P+ R+ ++TY+AP+ V+I + GS + E
Sbjct: 82 STFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDE 141
Query: 131 KTTMEK-NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
+ T E + IG++PIMLRS C+L D+ +L +GEC D GGYFII G+EKVL+ Q
Sbjct: 142 RRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQ 201
Query: 190 EQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMK 249
E+++ N V + KK + + MYL + K P+ +
Sbjct: 202 EKMNNNHVYVF--KKSPPSKYSYVAEIRSCQETGSR-PTSTMYLKMLHNTNKGPVGIKAT 258
Query: 250 AMGMESDQEVV---QMVG--RDPRYSALLLPSIEECANLDIY--TQEKALEYLEGKVKRS 302
++ D V+ + +G D + ++ +D+ + E++ +V
Sbjct: 259 VPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESFVIQSQEVALD 318
Query: 303 TFG---SPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
G S RE R A +L+ L +V V K FY + R++ A L +
Sbjct: 319 YLGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLERR 378
Query: 357 AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
+DD+D+ NKRL+L+G L+ LF LFK + +V+ + + K F S +
Sbjct: 379 PLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK---DKEFIASSAVKS 435
Query: 417 DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
+IT GL+ +L+TGN+ + + G+ QVL RL+F TL H+ R++ + K++ P
Sbjct: 436 KTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKP 495
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R L + WG++CP +TPEG+ACGLVKNLA+M++++ P++ E+LE +S
Sbjct: 496 RQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEIS- 554
Query: 537 EELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
+L + S IF NG+ +G H +P +R LRR G + VSV + +++ + + +
Sbjct: 555 -DLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYT 613
Query: 596 DGGRVCRPLVIADKGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDVNEENNALIALY 654
D GR CRPL + +IK+ H+ +L++ + D L EG++EY+D EE LIA+
Sbjct: 614 DPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMT 673
Query: 655 EGDATP 660
D P
Sbjct: 674 PEDLVP 679
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 836 (299.3 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 178/398 (44%), Positives = 243/398 (61%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RMD++ +L Y
Sbjct: 746 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYY 805
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
PQ+PL TTR++E + + +L AGQNA VA+ YSGY+ ED+++MN+SS+DRG R + +
Sbjct: 806 PQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 865
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDGLAAPGEIIKPNDVYINKESPL 839
Y I ++ + +P R+ + + LD+DGL APG + D+ I K +P+
Sbjct: 866 YMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPI 925
Query: 840 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
+ Q ++ R A + E+ +VD+V L ++ +G +K +R T+ P+
Sbjct: 926 PADAEELGQRTQYHTK-RDASTPLRST--ESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQ 982
Query: 900 LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959
+GDKF+SRHGQKG G + ED PF+ GI PDLI+NPH PSRMTV +IE L K
Sbjct: 983 IGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVS 1042
Query: 960 VSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
G F G+ S D T E IS L HG+ G +++Y+G TG L A +F GP
Sbjct: 1043 SLSG-FE-----GDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGP 1096
Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
YYQ+L+HMV DK+HAR GP +LTRQP EGR+R+GG
Sbjct: 1097 TYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1134
Score = 642 (231.1 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 172/530 (32%), Positives = 277/530 (52%)
Query: 121 IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
+E++Q +K T K V +G++PIMLRS C+L E E L ECP D GGYF+I
Sbjct: 144 LEWIQ-EEPDKDTETK--VFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVIN 200
Query: 181 GTEKVLLIQEQLSKNRVIIDTDKKG------NINAXXXXXXXXXXXXXXIQM------EK 228
G+EKVL+ QE+ + N I+ KK ++ +Q+ EK
Sbjct: 201 GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 258
Query: 229 GKMYLLLNQ---FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
G + ++K+ IPI++V +A+G+ D ++++ + D + +L P +EE
Sbjct: 259 GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 316
Query: 282 NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
I +E AL+++ G+ R G R A IL+ L N+ K F++
Sbjct: 317 GFVIQEREVALDFI-GR--RGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373
Query: 342 AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
M+ R++ L + DD+D+ G KRL+L+G L++ LF LFK + ++ + +
Sbjct: 374 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433
Query: 402 PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
F+++ + +IT GL +L+TGN+ +R M R G++QVL R ++ TL H+
Sbjct: 434 ---GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHL 490
Query: 461 TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LMT ++ P++
Sbjct: 491 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 550
Query: 521 SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
G+E LE + P+S V NG+ +G HR P D MR+LRR+G + V
Sbjct: 551 GFLRDYGLEVLE--DYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608
Query: 581 SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL 623
S+ + +++ I +D GRV RPL I D KG +I + H+K+LL
Sbjct: 609 SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLL 658
Score = 110 (43.8 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 12 DEQLPDKQKLAAPVKSVV--DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
DE + D + + + + D + ++ F + +GLV Q LDSF+ FV T I+++V +
Sbjct: 4 DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63
Query: 70 IVSGIDPSIFLRFKD------------VRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAP 116
++ P+ KD + I +PS T DG + + P RL ++TY++P
Sbjct: 64 LILD-QPAQHTSEKDHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSP 122
Query: 117 ILVNI 121
+ V++
Sbjct: 123 LYVDM 127
Score = 59 (25.8 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 609 KGISRIKEHHMKELL--DGVRSFDD-----------FLREGLIEYLDVNEENNALIALYE 655
KG +I + H+K+LL D + D+ + +G++EY+D EE +IA+
Sbjct: 644 KGELKITKEHVKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTP 703
Query: 656 GD 657
D
Sbjct: 704 DD 705
Score = 40 (19.1 bits), Expect = 4.7e-89, Sum P(3) = 4.7e-89
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 50 DSFNYFVNTGIRKIVRANDRIVSGI 74
D YFV G K++ A +R + I
Sbjct: 192 DMGGYFVINGSEKVLIAQERSAANI 216
Score = 37 (18.1 bits), Expect = 1.7e-67, Sum P(4) = 1.7e-67
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 654 YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
+EGDA+P T + E + L L + + ++ Y GK+ M + F
Sbjct: 1047 FEGDASP-FTDVTTEQISTL-----LRDHGYQSRGFEVMYNGHTGKKLMAQVFF 1094
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 836 (299.3 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 178/398 (44%), Positives = 243/398 (61%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RMD++ +L Y
Sbjct: 746 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYY 805
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
PQ+PL TTR++E + + +L AGQNA VA+ YSGY+ ED+++MN+SS+DRG R + +
Sbjct: 806 PQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 865
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDGLAAPGEIIKPNDVYINKESPL 839
Y I ++ + +P R+ + + LD+DGL APG + D+ I K +P+
Sbjct: 866 YMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPI 925
Query: 840 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
+ Q ++ R A + E+ +VD+V L ++ +G +K +R T+ P+
Sbjct: 926 PADAEELGQRTQYHTK-RDASTPLRST--ESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQ 982
Query: 900 LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959
+GDKF+SRHGQKG G + ED PF+ GI PDLI+NPH PSRMTV +IE L K
Sbjct: 983 IGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVS 1042
Query: 960 VSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
G F G+ S D T E IS L HG+ G +++Y+G TG L A +F GP
Sbjct: 1043 SLSG-FE-----GDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGP 1096
Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
YYQ+L+HMV DK+HAR GP +LTRQP EGR+R+GG
Sbjct: 1097 TYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1134
Score = 642 (231.1 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 172/530 (32%), Positives = 277/530 (52%)
Query: 121 IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
+E++Q +K T K V +G++PIMLRS C+L E E L ECP D GGYF+I
Sbjct: 144 LEWIQ-EEPDKDTETK--VFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVIN 200
Query: 181 GTEKVLLIQEQLSKNRVIIDTDKKG------NINAXXXXXXXXXXXXXXIQM------EK 228
G+EKVL+ QE+ + N I+ KK ++ +Q+ EK
Sbjct: 201 GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 258
Query: 229 GKMYLLLNQ---FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
G + ++K+ IPI++V +A+G+ D ++++ + D + +L P +EE
Sbjct: 259 GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 316
Query: 282 NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
I +E AL+++ G+ R G R A IL+ L N+ K F++
Sbjct: 317 GFVIQEREVALDFI-GR--RGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373
Query: 342 AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
M+ R++ L + DD+D+ G KRL+L+G L++ LF LFK + ++ + +
Sbjct: 374 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433
Query: 402 PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
F+++ + +IT GL +L+TGN+ +R M R G++QVL R ++ TL H+
Sbjct: 434 ---GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHL 490
Query: 461 TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LMT ++ P++
Sbjct: 491 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 550
Query: 521 SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
G+E LE + P+S V NG+ +G HR P D MR+LRR+G + V
Sbjct: 551 GFLRDYGLEVLE--DYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608
Query: 581 SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL 623
S+ + +++ I +D GRV RPL I D KG +I + H+K+LL
Sbjct: 609 SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLL 658
Score = 110 (43.8 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 12 DEQLPDKQKLAAPVKSVV--DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
DE + D + + + + D + ++ F + +GLV Q LDSF+ FV T I+++V +
Sbjct: 4 DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63
Query: 70 IVSGIDPSIFLRFKD------------VRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAP 116
++ P+ KD + I +PS T DG + + P RL ++TY++P
Sbjct: 64 LILD-QPAQHTSEKDHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSP 122
Query: 117 ILVNI 121
+ V++
Sbjct: 123 LYVDM 127
Score = 59 (25.8 bits), Expect = 2.6e-162, Sum P(4) = 2.6e-162
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 609 KGISRIKEHHMKELL--DGVRSFDD-----------FLREGLIEYLDVNEENNALIALYE 655
KG +I + H+K+LL D + D+ + +G++EY+D EE +IA+
Sbjct: 644 KGELKITKEHVKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTP 703
Query: 656 GD 657
D
Sbjct: 704 DD 705
Score = 40 (19.1 bits), Expect = 4.7e-89, Sum P(3) = 4.7e-89
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 50 DSFNYFVNTGIRKIVRANDRIVSGI 74
D YFV G K++ A +R + I
Sbjct: 192 DMGGYFVINGSEKVLIAQERSAANI 216
Score = 37 (18.1 bits), Expect = 1.7e-67, Sum P(4) = 1.7e-67
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 654 YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
+EGDA+P T + E + L L + + ++ Y GK+ M + F
Sbjct: 1047 FEGDASP-FTDVTTEQISTL-----LRDHGYQSRGFEVMYNGHTGKKLMAQVFF 1094
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 843 (301.8 bits), Expect = 1.3e-157, Sum P(2) = 1.3e-157
Identities = 177/398 (44%), Positives = 247/398 (62%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
TH EI P ILG++A +IP+P HNQSPRNTYQ AMGKQAMG N RMD++ +L Y
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
PQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN++S+DRG R I +
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 847
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDGLAAPGEIIKPNDVYINKESPL 839
YT +K + + RP R+ + L+DDGL APG + D+ I K +P+
Sbjct: 848 YTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPI 907
Query: 840 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
+ Q ++ R + E+ +VD+V + +++ G +K +R TR P+
Sbjct: 908 PLDHEELGQRTQLHAK-RDVSTPLRST--ESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQ 964
Query: 900 LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959
+GDKF+SRHGQKG G + ED PFS +GI PD+I+NPH PSRMTV ++E K
Sbjct: 965 IGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVS 1024
Query: 960 VSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
G F G+ + D TVE++S+ L HGF G +++Y G TG L A +F+GP
Sbjct: 1025 ALSG-FE-----GDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078
Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
YYQ+LKH+V DK+HAR GP +LTRQP EGR+R+GG
Sbjct: 1079 TYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGG 1116
Score = 720 (258.5 bits), Expect = 1.3e-157, Sum P(2) = 1.3e-157
Identities = 189/564 (33%), Positives = 300/564 (53%)
Query: 130 EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
E+ E + V IG+IPIMLRS C+L G ++EL L ECP D GGYFII G+EKV++ Q
Sbjct: 141 EEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQ 200
Query: 190 EQLSKNRVIIDTDKKGN------INAXXXXXXXXXXXXXXIQME--------KGKMYLLL 235
E+ + N I+ KK + +Q++ G+
Sbjct: 201 ERSAAN--IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRAT 258
Query: 236 NQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK--AL 292
+++ IPI++V +A+G+ D+++++ + DP +L ++ C Q+K AL
Sbjct: 259 LPYIRSDIPIVIVFRALGVVPDRDILEHICYDPN-DFQMLEMMKPCIEEAFVIQDKDIAL 317
Query: 293 EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
+Y+ GK + ST G R A IL+ L ++ K F++ M+ RM+
Sbjct: 318 DYI-GK-RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCA 375
Query: 353 LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLS 411
L + DD+D+ G KRL+L+G L++ LF LF+ M +V K + K ++R F+L+
Sbjct: 376 LERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYK----YMQKCVETNREFNLT 431
Query: 412 QFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
+ + IT GL +L+TGN+ D KR ++R G++QVL R +F TL H+ R + +
Sbjct: 432 LAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRD 491
Query: 471 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
K++ PR L + WGM+CP +TPEG+ACGLVKNL+LM++V+ P+I G+E
Sbjct: 492 GKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLET 551
Query: 531 LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
LE + +PN+ V NG+ LG HR P + +R LRR I VS+ + +++
Sbjct: 552 LEDYNPSA--SPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKE 609
Query: 591 VYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD-D---------FL 633
+ + +D GR+CRPL I D +G I++ H+++L++ +D D +
Sbjct: 610 LRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALV 669
Query: 634 REGLIEYLDVNEENNALIALYEGD 657
GLIEYLD EE +IA+ D
Sbjct: 670 SSGLIEYLDAEEEETVMIAMSPED 693
Score = 233 (87.1 bits), Expect = 3.7e-106, Sum P(2) = 3.7e-106
Identities = 65/200 (32%), Positives = 107/200 (53%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
D + ++ F + L +Q L SF+ FV +++IV + + +G + R+
Sbjct: 16 DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY 75
Query: 83 K----DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE----YVQGSHT---- 129
+ + + +P+MT DG + + P RL ++TY++P+ V++ S+
Sbjct: 76 EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135
Query: 130 EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
E+ +E+ D V IG+IPIMLRS C+L G ++EL L ECP D GGYFII G+EK
Sbjct: 136 EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195
Query: 185 VLLIQEQLSKNRVIIDTDKK 204
V++ QE+ + N I+ KK
Sbjct: 196 VIIAQERSAAN--IVQVFKK 213
Score = 39 (18.8 bits), Expect = 5.4e-68, Sum P(2) = 5.4e-68
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 654 YEGDATPDTTHIEIE 668
+EGDATP T + +E
Sbjct: 1029 FEGDATP-FTDVTVE 1042
Score = 37 (18.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 391 VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMT-QVLA 449
V V+ LSK S S F+ D + + L + F + F++ G T + L
Sbjct: 1012 VAHLVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLV 1071
Query: 450 RLSFIG 455
F+G
Sbjct: 1072 AQVFLG 1077
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 815 (292.0 bits), Expect = 6.6e-157, Sum P(4) = 6.6e-157
Identities = 173/398 (43%), Positives = 240/398 (60%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RM+++ +L Y
Sbjct: 765 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYY 824
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
PQ+PL TTR++E + + +L AGQNA VA+ YSGY+ ED+++MN+SS+DRG R + +
Sbjct: 825 PQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRT 884
Query: 783 YTAINQKYANSTSDRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPL 839
Y+ + + +R +P D G LD+DG+ PG + D+ I K +PL
Sbjct: 885 YSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPL 944
Query: 840 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
+ GQ + + E +VD+V + + + +K +R T+ P+
Sbjct: 945 APDAEEL---GQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQ 1001
Query: 900 LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959
+GDKF+SRHGQKG G +QED PF+ G+ PDLI+NPH PSRMT+ +IE K
Sbjct: 1002 IGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVS 1061
Query: 960 VSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
G F G+ + D TV+SIS L +HG+ G +++Y+G TG L A +F+GP
Sbjct: 1062 ALRG-FE-----GDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGP 1115
Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
YYQ+L+HMV DK+HAR GP +LTRQP EGRAR+GG
Sbjct: 1116 TYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGG 1153
Score = 603 (217.3 bits), Expect = 6.6e-157, Sum P(4) = 6.6e-157
Identities = 160/496 (32%), Positives = 253/496 (51%)
Query: 136 KNDVV-IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
K + V IG++PIML+S C+L E L ECP D GGYFII G+EKVL+ QE+ +
Sbjct: 174 KEETVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQERSAG 233
Query: 195 NRVII-------DTDKKGNINAXXXXXXXXXXXXXXIQMEKGK---------MYLLLNQF 238
N V + T I + KG + L
Sbjct: 234 NTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGPTIRSTLPYI 293
Query: 239 VKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYL 295
IPI++V +A+G+ SD++++ + D +L P IEE I +E AL+++
Sbjct: 294 KADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI 351
Query: 296 EGKVKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
KR + S N +R R A I++ L ++ + K F++ M+ R+++ L
Sbjct: 352 ---AKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCAL 408
Query: 354 NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
+ +DD+D+ G KRL+L+G L++ LF LF + ++Q+ V + L+
Sbjct: 409 GRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVES---DREIYLNVG 465
Query: 414 IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
+ ++T GL L+TGN+ + K+ + G++QVL+R ++ TL H+ R + + K
Sbjct: 466 LKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGK 525
Query: 473 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
++ PR L + WG++CP +TPEG+ACGLVKNLALM ++T P+I +E LE
Sbjct: 526 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLE 585
Query: 533 LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVY 592
E PN+ V NG+ +G HR+P + M+ LRR I VS+ + ++R
Sbjct: 586 EF--EPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFK 643
Query: 593 IASDGGRVCRPLVIAD 608
I +D GRVCRPL + D
Sbjct: 644 IFTDAGRVCRPLFVVD 659
Score = 128 (50.1 bits), Expect = 6.6e-157, Sum P(4) = 6.6e-157
Identities = 34/127 (26%), Positives = 66/127 (51%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
D + ++ F +GLV Q LDSF+ F+++ ++++V ++ +DP +
Sbjct: 24 DCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVVR 83
Query: 80 ---LRFKDVRIGQP-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
L+F V + +P +M DG + + PH RL +MTYA+P+ + I+ E+ +
Sbjct: 84 RYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIMEGRERMVGD 143
Query: 136 KNDVVIG 142
++D +G
Sbjct: 144 RDDDDMG 150
Score = 56 (24.8 bits), Expect = 6.6e-157, Sum P(4) = 6.6e-157
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 629 FDDFLREGLIEYLDVNEENNALIALYEGD 657
+D ++ G++EY+D EE +I + D
Sbjct: 702 WDGLVKSGVVEYVDAEEEETIMIVMTPED 730
Score = 41 (19.5 bits), Expect = 3.9e-86, Sum P(3) = 3.9e-86
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 50 DSFNYFVNTGIRKIVRANDR 69
DS YF+ G K++ A +R
Sbjct: 211 DSGGYFIINGSEKVLIAQER 230
Score = 38 (18.4 bits), Expect = 9.3e-63, Sum P(3) = 9.3e-63
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 654 YEGDATPDT 662
+EGDATP T
Sbjct: 1066 FEGDATPFT 1074
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 1412 (502.1 bits), Expect = 5.6e-154, Sum P(2) = 5.6e-154
Identities = 330/839 (39%), Positives = 479/839 (57%)
Query: 241 KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
+IPI++V +A+G +D+++++ + D + LL PS+EE I Q AL+Y+ G
Sbjct: 271 EIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVALDYI-G 327
Query: 298 KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
K + +T G R A IL+ L +V + + K +Y ++ R++ L +
Sbjct: 328 K-RGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRP 386
Query: 358 MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR- 416
DD+D+ GNKRL+L+G L+ LF LF+ + +V+ V + +L QF ++
Sbjct: 387 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN---GKEVNL-QFAIKA 442
Query: 417 DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
+IT GL+ +L+TGN+ R G++QVL RL++ TL H+ R++ + K++ P
Sbjct: 443 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 502
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R L SQWGM+CP +TPEG+ACGLVKNLALM ++T P++ G E+ E +S
Sbjct: 503 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 562
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
+ P + + NG+ +G HR P +R+LRR + V V + + + + I +D
Sbjct: 563 SVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 620
Query: 597 GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDVNEENNALIA 652
GR RPL I D IK+ + L + +D + +G IEY+D EE +I+
Sbjct: 621 YGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMIS 680
Query: 653 LYEGDA-----------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
+ D T + TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 681 MTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 740
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
MG N RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ YSGY+ ED
Sbjct: 741 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 800
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDG 818
+++MN+SS+DRGF R + + Y +K + RPDR R LDDDG
Sbjct: 801 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDG 860
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
LA PG + DV I K +P+ S GQ+ SRY + ET +VD+V L
Sbjct: 861 LAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHSISLRHSETGMVDQVLL 915
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
++ +G +K +R R P++GDKFSSRHGQKG G QED P++ G+ PD+I+NP
Sbjct: 916 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNP 975
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNG 997
H PSRMT+G++IE + GK H G G+ + D TV++IS+ L K G+ G
Sbjct: 976 HAIPSRMTIGQLIECIMGKVAA-----HMGKE-GDATPFTDVTVDNISKALHKCGYQMRG 1029
Query: 998 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+ +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP +LTRQP EGR+R+GG
Sbjct: 1030 FERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1088
Score = 721 (258.9 bits), Expect = 8.4e-76, Sum P(2) = 8.4e-76
Identities = 189/606 (31%), Positives = 312/606 (51%)
Query: 80 LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEK 136
+ F + + +P MT DG + L P RL ++TY+AP+ V++ ++ H + E
Sbjct: 88 ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTET 147
Query: 137 ND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
D V IG++PIMLRS C L+ E +L LGECP D GGYFII G+EKVL+ QE++S
Sbjct: 148 QDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 207
Query: 194 KNRVIIDTDKKGNINAXXXXXXXXXX------XXXXIQM-----EKGK---MYLLLN-QF 238
N V + ++ N A ++M KG Y+ +
Sbjct: 208 TNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPY 267
Query: 239 VK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
++ +IPI++V +A+G +D+++++ + D ++ + + + + + + L L+
Sbjct: 268 IRTEIPIIIVFRALGFVADKDILEHICYD--FADTQMMELLRPSLEEAFVIQNQLVALDY 325
Query: 298 KVKR-STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
KR +T G R A IL+ L +V + + K +Y ++ R++ L +
Sbjct: 326 IGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRR 385
Query: 357 AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
DD+D+ GNKRL+L+G L+ LF LF+ + +V+ V + +L QF ++
Sbjct: 386 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN---GKEVNL-QFAIK 441
Query: 417 -DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
+IT GL+ +L+TGN+ R G++QVL RL++ TL H+ R++ + K++
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 501
Query: 476 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
PR L SQWGM+CP +TPEG+ACGLVKNLALM ++T P++ G E+ E +S
Sbjct: 502 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 561
Query: 536 GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
+ P + + NG+ +G HR P +R+LRR + V V + + + + I +
Sbjct: 562 PSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 619
Query: 596 DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDVNEENNALI 651
D GR RPL I D IK+ + L + +D + +G IEY+D EE +I
Sbjct: 620 DYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMI 679
Query: 652 ALYEGD 657
++ D
Sbjct: 680 SMTISD 685
Score = 111 (44.1 bits), Expect = 5.6e-154, Sum P(2) = 5.6e-154
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-RAND---RIVSGIDP--------S 77
D + ++ + + +GLV+Q LDSF+ F+ +++IV + D R S +P +
Sbjct: 25 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84
Query: 78 IF-LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
I+ + F + + +P MT DG + L P RL ++TY+AP+ V++ ++ H +
Sbjct: 85 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144
Query: 134 MEKND 138
E D
Sbjct: 145 TETQD 149
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 835 (299.0 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 212/649 (32%), Positives = 353/649 (54%)
Query: 229 GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDI 285
G++ L +I + ++ +A+G SD++++Q + D + L ++EEC ++
Sbjct: 272 GQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEEC--IEY 329
Query: 286 YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
TQ+ L+++ GK + T G+ R A +LR L ++ H K +++ M+
Sbjct: 330 PTQDVCLDFI-GK-RGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMI 387
Query: 346 RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
R++ A L + DD+D+ G KRL+++G L++ F F+ M +V++ ++ + +
Sbjct: 388 NRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRR---VLQRQIDNN 444
Query: 406 SRFDLSQFIVRDS-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
FD++ I S IT G++ L+TGN+ K K+ R G+ QVL RL++ L H+ R+
Sbjct: 445 KPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRL 504
Query: 464 SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
+ + K++ PR L + WGM+CP +TPEG++ GLVKNL+LM ++ +
Sbjct: 505 NTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFL 564
Query: 524 YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
G+E L+ + E + + NG +G + + + +LRR I S+
Sbjct: 565 TEWGLESLDEVPPELMKE--KVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIV 622
Query: 584 --VNEKQRCVYIASDGGRVCRPLVIADK--GISRIK--EHHMKELLDGVRSFD-DFL-RE 635
VN K+ + I +D GR RPL + G +++K + H+ + +++ D+L +E
Sbjct: 623 RDVNSKE--IKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPETYNWDYLIQE 680
Query: 636 GLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSP 689
G+IEY+D EE +I+++ D T TH EI P ILGV A +IP+ HNQSP
Sbjct: 681 GIIEYIDCEEEETTMISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSP 740
Query: 690 RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
RNTYQ AMGKQAMG N R+D+L +LL YPQ+PL+ T+ +E + + +L AG NA V
Sbjct: 741 RNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIV 800
Query: 750 AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD-RTGPGA 808
A+M Y+GY+ ED+++MN+SS+DRG R + + YT+ ++ + + +P R
Sbjct: 801 AIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNL 860
Query: 809 ERMQI--LDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDS 854
+R LDDDGL APG + +D+ I K SP ++ I+ T S
Sbjct: 861 KRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSS 909
Score = 458 (166.3 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 93/188 (49%), Positives = 119/188 (63%)
Query: 869 ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 928
E V+D V L S+ G+ K +R R P++GDKF+SRHGQKG G + ED PFS
Sbjct: 1065 ENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSL 1124
Query: 929 GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 988
GI PD+IMNPH PSRMT+G ++E L GK G G P TV+ IS+ L
Sbjct: 1125 GIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEG----GEGDATPFSKI-TVQEISQKL 1179
Query: 989 VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1048
G+ G +M+Y+G G L++ IF+GP YYQ+LKHMV DK+HAR GP M+TRQPT
Sbjct: 1180 HNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPT 1239
Query: 1049 EGRARNGG 1056
EGR+R+GG
Sbjct: 1240 EGRSRDGG 1247
Score = 203 (76.5 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 47/133 (35%), Positives = 77/133 (57%)
Query: 80 LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTME 135
L+F + + +P +S K L P RL ++TY++ I ++IE Y+ T+K ++
Sbjct: 97 LKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLK 156
Query: 136 KNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
+ + +GRIP+ML+S C G E E+A +GEC D GGYFI+ G EKVL+ QE+
Sbjct: 157 EKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQER 216
Query: 192 LSKNRVIIDTDKK 204
++ N + + K+
Sbjct: 217 MANNFIYVFKKKQ 229
Score = 101 (40.6 bits), Expect = 2.2e-136, Sum P(3) = 2.2e-136
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 11 KDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
K EQL D K + D + ++ F GLV Q ++S+N F+ +++I+ + +I
Sbjct: 16 KTEQLSDNDKNPNEQITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKI 75
Query: 71 VSGIDPS-----------IF-LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPI 117
P I+ L+F + + +P +S K L P RL ++TY++ I
Sbjct: 76 EIRPQPQYRTDRDENDNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAI 135
Query: 118 LVNIE---YVQGSHTEKTTMEKNDVVIGRI 144
++IE Y+ T+K + K + RI
Sbjct: 136 YIDIEQSTYIIDEVTKKPVL-KEKFIYERI 164
Score = 45 (20.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 662 TTHIEIEPFTILGVIAGLIPYPHHNQSPR---NTYQCAMGKQA 701
T E PF+ LG+ +I PH S + +C GK A
Sbjct: 1113 TYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVA 1155
Score = 38 (18.4 bits), Expect = 9.3e-130, Sum P(3) = 9.3e-130
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 35 LPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
LPE ++ + + D YF+ G K++ A +R+ +
Sbjct: 183 LPEN-EIADMGECSYDQGGYFIVNGGEKVLVAQERMAN 219
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 835 (299.0 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 212/649 (32%), Positives = 353/649 (54%)
Query: 229 GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDI 285
G++ L +I + ++ +A+G SD++++Q + D + L ++EEC ++
Sbjct: 272 GQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEEC--IEY 329
Query: 286 YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
TQ+ L+++ GK + T G+ R A +LR L ++ H K +++ M+
Sbjct: 330 PTQDVCLDFI-GK-RGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMI 387
Query: 346 RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
R++ A L + DD+D+ G KRL+++G L++ F F+ M +V++ ++ + +
Sbjct: 388 NRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRR---VLQRQIDNN 444
Query: 406 SRFDLSQFIVRDS-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
FD++ I S IT G++ L+TGN+ K K+ R G+ QVL RL++ L H+ R+
Sbjct: 445 KPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRL 504
Query: 464 SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
+ + K++ PR L + WGM+CP +TPEG++ GLVKNL+LM ++ +
Sbjct: 505 NTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFL 564
Query: 524 YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
G+E L+ + E + + NG +G + + + +LRR I S+
Sbjct: 565 TEWGLESLDEVPPELMKE--KVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIV 622
Query: 584 --VNEKQRCVYIASDGGRVCRPLVIADK--GISRIK--EHHMKELLDGVRSFD-DFL-RE 635
VN K+ + I +D GR RPL + G +++K + H+ + +++ D+L +E
Sbjct: 623 RDVNSKE--IKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPETYNWDYLIQE 680
Query: 636 GLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSP 689
G+IEY+D EE +I+++ D T TH EI P ILGV A +IP+ HNQSP
Sbjct: 681 GIIEYIDCEEEETTMISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSP 740
Query: 690 RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
RNTYQ AMGKQAMG N R+D+L +LL YPQ+PL+ T+ +E + + +L AG NA V
Sbjct: 741 RNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIV 800
Query: 750 AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD-RTGPGA 808
A+M Y+GY+ ED+++MN+SS+DRG R + + YT+ ++ + + +P R
Sbjct: 801 AIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNL 860
Query: 809 ERMQI--LDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDS 854
+R LDDDGL APG + +D+ I K SP ++ I+ T S
Sbjct: 861 KRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSS 909
Score = 458 (166.3 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 93/188 (49%), Positives = 119/188 (63%)
Query: 869 ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 928
E V+D V L S+ G+ K +R R P++GDKF+SRHGQKG G + ED PFS
Sbjct: 1065 ENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSL 1124
Query: 929 GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 988
GI PD+IMNPH PSRMT+G ++E L GK G G P TV+ IS+ L
Sbjct: 1125 GIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEG----GEGDATPFSKI-TVQEISQKL 1179
Query: 989 VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1048
G+ G +M+Y+G G L++ IF+GP YYQ+LKHMV DK+HAR GP M+TRQPT
Sbjct: 1180 HNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPT 1239
Query: 1049 EGRARNGG 1056
EGR+R+GG
Sbjct: 1240 EGRSRDGG 1247
Score = 203 (76.5 bits), Expect = 3.9e-147, Sum P(3) = 3.9e-147
Identities = 47/133 (35%), Positives = 77/133 (57%)
Query: 80 LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTME 135
L+F + + +P +S K L P RL ++TY++ I ++IE Y+ T+K ++
Sbjct: 97 LKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPVLK 156
Query: 136 KNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
+ + +GRIP+ML+S C G E E+A +GEC D GGYFI+ G EKVL+ QE+
Sbjct: 157 EKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQER 216
Query: 192 LSKNRVIIDTDKK 204
++ N + + K+
Sbjct: 217 MANNFIYVFKKKQ 229
Score = 101 (40.6 bits), Expect = 2.2e-136, Sum P(3) = 2.2e-136
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 11 KDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
K EQL D K + D + ++ F GLV Q ++S+N F+ +++I+ + +I
Sbjct: 16 KTEQLSDNDKNPNEQITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKI 75
Query: 71 VSGIDPS-----------IF-LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPI 117
P I+ L+F + + +P +S K L P RL ++TY++ I
Sbjct: 76 EIRPQPQYRTDRDENDNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAI 135
Query: 118 LVNIE---YVQGSHTEKTTMEKNDVVIGRI 144
++IE Y+ T+K + K + RI
Sbjct: 136 YIDIEQSTYIIDEVTKKPVL-KEKFIYERI 164
Score = 45 (20.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 662 TTHIEIEPFTILGVIAGLIPYPHHNQSPR---NTYQCAMGKQA 701
T E PF+ LG+ +I PH S + +C GK A
Sbjct: 1113 TYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVA 1155
Score = 38 (18.4 bits), Expect = 9.3e-130, Sum P(3) = 9.3e-130
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 35 LPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
LPE ++ + + D YF+ G K++ A +R+ +
Sbjct: 183 LPEN-EIADMGECSYDQGGYFIVNGGEKVLVAQERMAN 219
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 198/343 (57%), Positives = 248/343 (72%)
Query: 717 LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGR
Sbjct: 1 MYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 60
Query: 777 CIVVKKYTAINQKYANSTSDRILRP--DR-TGPGAERMQILDDDGLAAPGEIIKPNDVYI 833
C+V K ++Y N T D+++ P D T R +ILD DG+ +PGE ++ V +
Sbjct: 61 CLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLV 120
Query: 834 NKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 893
NK P T+ + +Y+ TYKG +++V + S+ IK L+R
Sbjct: 121 NKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDS--YIEKVMISSNAEDAFLIKMLLR 178
Query: 894 HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 953
TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IEL
Sbjct: 179 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIEL 238
Query: 954 LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1013
L GKAGV GRFHYG+AFG V+ + E LV+HG++Y GKD + SGITG PL+AY
Sbjct: 239 LAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAY 293
Query: 1014 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
I+ GP+YYQKLKHMVLDKMHAR GPR +LTRQPTEGR+R+GG
Sbjct: 294 IYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 336
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 866 (309.9 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 271/960 (28%), Positives = 446/960 (46%)
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR- 196
+V +GR+PIM++S C L G +L E L+ GGYFI+ G EKV+ + N
Sbjct: 115 EVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHP 174
Query: 197 VIID----TDK-----KGNINAXXXXXXXXXXXXXXIQMEKGKMYL--LLNQFVKKIPIM 245
V + T++ K I + G+ L L + +P
Sbjct: 175 VALHRKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPAT 234
Query: 246 VVMKAMGMESDQEVVQMVGRDPRYSALLLPSIE----ECANLDIYTQEKALEYLEGKVK- 300
+++KA+ +++E+ + + + + L +E E +I TQE+ L+Y+ + +
Sbjct: 235 LLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRA 294
Query: 301 RSTFGSPP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
R+ F PP N + GR F I + VF VH N+ K + +M++++ + K
Sbjct: 295 RTQF--PPSFSNIKIGRWF-INQFVF-----VHLPNYNDKYNLLILMIQKLYAMVGGKCG 346
Query: 358 MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV--DIILSKPSRSSRFDLSQFIV 415
D+ D + + L+G + ++ ++ + + V K S D + ++
Sbjct: 347 TDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVL 406
Query: 416 RDSITVG--LERTLSTGNF-DVKRFKMHR-KGMTQVLARLSFIGTLGHMTRVSP-QFEKS 470
+ + L+TGN + + G + +L+F+ + H + F +
Sbjct: 407 DKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFAT 466
Query: 471 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL---- 526
K + R L P WG CP TP+G CGL+ +L+ VT D + P + L
Sbjct: 467 MKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSF 526
Query: 527 ----GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
G+ ++++S ++ + +G +LGK PK ++++ LR +G S+
Sbjct: 527 LAAHGMLPIDMVS---VYQHQYLTITLDGRVLGKIE-PKAGEEMVKMLRYLRSMGNEPSI 582
Query: 583 FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF--LREGLIEY 640
+ + I+ P + + S I G R L G E
Sbjct: 583 -----PKTMEIS-----YAPPTNVENGQYSGISL-----FTTGARFMRPVVNLTSGQNEL 627
Query: 641 LDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
+ E+ IA+ + TTHIE P + ++A L P+ +NQSPRN YQC M K
Sbjct: 628 IGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAK 687
Query: 700 QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
Q MG + R D+ LY + Q+P++ T+ + G NA +AV+S +GYD+
Sbjct: 688 QTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDM 747
Query: 760 EDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRIL--RPDRTGPGAERMQILDD 816
EDA+++NKS+ +RGFG V K +Y ++Q + + RP+ ++ +D
Sbjct: 748 EDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKF--IDT 805
Query: 817 DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 876
DGL G +IKP + Y P + R G+ ++ R + GP+G T ++
Sbjct: 806 DGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIF-GPNGATRDPSKI 864
Query: 877 ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 936
++C+K +R R P +GDKFSSRHGQKGV + + + PF+E G+ PD+I+
Sbjct: 865 -------NNICVK--LRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVII 915
Query: 937 NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 996
NP+ FPSRMT+G ++E+L GKAG G+F +AF + ++ E L K GF+
Sbjct: 916 NPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNT-AIDFFGEQLAKAGFNRF 974
Query: 997 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
G + +YSG TG + IF G YYQ+L+HMV DK R G LTRQP +GR GG
Sbjct: 975 GNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGG 1034
Score = 178 (67.7 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 46/160 (28%), Positives = 85/160 (53%)
Query: 40 KVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-LRFKDVRIGQPSMTVDGVS 98
+++ L++ H+DSF++F + GI +++ ++ + + + + +RF D+++ +P+ +
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEKE 63
Query: 99 EKLNPHMCRLSDMTYAAPI-----LVNI----EYVQGSHTEKTTMEKN---DVVIGRIPI 146
KL P+ R + TY AP L + E G+ + E +V +GR+PI
Sbjct: 64 IKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLPI 123
Query: 147 MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
M++S C L G +L E L+ GGYFI+ G EKV+
Sbjct: 124 MVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVV 163
Score = 39 (18.8 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 46 KQHLDSFNYFVNTGIRKIVR 65
++ L+ YF+ G K+VR
Sbjct: 145 EEELEQGGYFIVNGNEKVVR 164
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 651 (234.2 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 232/831 (27%), Positives = 387/831 (46%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRA----NDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--V 97
+ H+DSF++ V+ G + +A R+ +G ++ ++F ++ +P++
Sbjct: 5 IASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNG--DAVTMKFTSAQLHKPTLDTGAKLT 62
Query: 98 SEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVL 155
S+ L P CR +TYA + V I+ H + ++ ++++G++PIMLRS C L
Sbjct: 63 SDTLPLLPAECRQRGLTYAGNLKVGIDV----HVNGSRLDIIEIILGKVPIMLRSEGCHL 118
Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKV--LLIQEQLSKNRVII-DTDK-KGNI-NAX 210
G EL GE P++ GGYFI+ G+EKV LLI + + II T K KG + +
Sbjct: 119 RGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEF 178
Query: 211 XXXXXXXXXXXXXIQM-----EKGKMYLLLNQFVKKI---PIMVVMKAMGMESDQEVVQM 262
+ M + G M L L QF ++I P+M ++KA+ ++D +
Sbjct: 179 GVMMRSVKENHTAVMMTLHYLDTGTMQLAL-QFRREIFYVPLMYIVKALTDKNDAVISAG 237
Query: 263 V--GR--DPRYSALLLPSIEECANLDIYTQEKALEYLEGK--VKRSTFGSP-PNDREGRA 315
GR D YS+ +L + +C +I QE A+ + + V S +P +D E
Sbjct: 238 FKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGR 297
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
F I+R+ L +H ++ K +A M ++++ + + A + D + +SG +
Sbjct: 298 F-IIRECVL----IHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHI 352
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPS--RSSRFDLSQF--IVRDSITVGLERTLSTGN 431
+ L+ + + +I V++ ++ + S+ +S L IT G+ L+TGN
Sbjct: 353 LLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGN 412
Query: 432 FDVKRFKM---HRKGMTQVLARLSFIGTLGHMTRVSP-QFEKSRKVSGPRALQPSQWGML 487
V R + G + + R++ + + H + F + + R L+P WG +
Sbjct: 413 L-VTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFI 471
Query: 488 CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI-SLCYCLGVEDLELLS----GEELHNP 542
CP TP+G CGL+ ++ + TD + + SL LG+ + ++ GEEL+ P
Sbjct: 472 CPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELY-P 530
Query: 543 NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
V+ NG LG K A + R LR A K+ + + + V ++D +
Sbjct: 531 ----VLMNGRFLGYVPITKA-ASIERYLRCA-KVAKDARIPYTSEIALVRRSTD----IK 580
Query: 603 PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
+ GI + + L+ VR+ L +E++ E+ + L +A P
Sbjct: 581 NIQTQYPGIYILSD--AGRLIRPVRN----LAMDAVEHIGTFEQVYLSVVLDPEEAEPGV 634
Query: 663 T-HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
T H E+ P + LIP+P HNQSPRN YQC MGKQ MG R D+ +Y L
Sbjct: 635 TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ 694
Query: 722 YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
+PQ+P+L E D+ G NA VAV+SY+GYD+EDA+ +NK+S RGF V+K
Sbjct: 695 FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Query: 782 KYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVY 832
IN R R E ++ + DGL PG ++VY
Sbjct: 755 -VERINLVTERERKTIFYRNPR-----EEIKTVGPDGLPIPGRRYFLDEVY 799
Score = 394 (143.8 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 81/199 (40%), Positives = 111/199 (55%)
Query: 861 QTYKGPDGETCVVDRVALCSDKNGDLCIKFLI---RHTRRPELGDKFSSRHGQKGVCGTI 917
+T+K E V + GD K + R R P +GDKF+SRHGQKG+ +
Sbjct: 811 RTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFL 870
Query: 918 VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977
E PFSE G+ PD+I NPHGFPSRMT+G MIE + GKA + G + S F +
Sbjct: 871 WPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDN 930
Query: 978 ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037
+ E L K G++Y G + YSG+ G ++ IF G +YYQ+L+HM+ DK R +
Sbjct: 931 T-AINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRAT 989
Query: 1038 GPRVMLTRQPTEGRARNGG 1056
GP +T QP +GR + GG
Sbjct: 990 GPIDPITHQPVKGRKKGGG 1008
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 338/1102 (30%), Positives = 507/1102 (46%)
Query: 10 PKD-EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND 68
PKD PD QK VK VD F L GL+ + I +
Sbjct: 16 PKDGTSFPDLQKA---VKPHVDSFNALTN----AGLLNYAVKEIGE--KCAFDSITQEEG 66
Query: 69 RIVSGIDPSIFLRFKDVRIGQPSMTV---DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ 125
+ I R +V+I +P ++ ++ K+ P R TY + +++ +
Sbjct: 67 GALK-FGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV 125
Query: 126 GSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
++ M + +G IPIM+RS RC L G AEL E + GGYFI+ G EK+
Sbjct: 126 NGGPRQSEMRE----VGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKL 181
Query: 186 L--LIQEQLSKNRVIIDTD--KKGN------INAXXXXXXXXXXXXXXIQMEKG----KM 231
+ LI + + II +G ++ + G +
Sbjct: 182 IRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRF 241
Query: 232 YLLLNQFVKKIPIMVVMKAMGMESDQEVVQ-MVGRDPRYSALLLPSIE----ECANLDIY 286
+ N+++ IP M+++KA+ SD+E+ + +VG+D + L +E + +Y
Sbjct: 242 HWRKNEYL--IPSMMILKALLETSDKEIFEGIVGKDLG-NTFLTDRVELMLRAYKSYGLY 298
Query: 287 TQEKALEYLEGKVKRSTFGSPPN--DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
+Q + L+YL K R G + D E F +L+ V L ++ + FR F M
Sbjct: 299 SQTETLQYLGSKF-RVVLGVAEDLTDVEVGRF-LLQKVVLVHLREAKDKFRLLLF----M 352
Query: 345 LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV--QKTVDIILSKP 402
+R++ + + D+ D ++ + L G L + ++ + ++ + Q +D+ S P
Sbjct: 353 IRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAP 412
Query: 403 SR--SSRFDLSQFI--VRDSITVGLERTLSTGNF--DVKRFKMHRKGMTQVLARLSFIGT 456
S R L++ + + I L+ LSTGN + G T V +L+F
Sbjct: 413 GVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRF 472
Query: 457 LGHMTRVSP-QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
L H V F K + R L P WG +CP TP+G CGL+ +LA + T
Sbjct: 473 LSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPS 532
Query: 516 EGPLI-SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLRR 572
+ I SL LGV+ ++ H V +G I+G ++ K ADV+R +
Sbjct: 533 DVSQIPSLLLSLGVDPPSVVG----HESGWGCVQLDGKIVGWCTYKLAKHVADVLRLM-- 586
Query: 573 AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF 632
KI E+ N A++ +V PL D I + H + G+ F +
Sbjct: 587 --KI-EYAVKLRNGT------ATEPAKV--PL---DLEIGYVPPSHNGQY-PGLYLFSNP 631
Query: 633 LR---------EGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPY 682
R G ++ L E+ IA + + P +TH+E P +L ++A + P+
Sbjct: 632 ARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVANMTPF 691
Query: 683 PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
NQSPRN YQC MGKQ MG R D+ LY L Q P++ + G D
Sbjct: 692 SDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYP 751
Query: 743 AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA-INQKYANSTSDRILRP 801
G NA VAV+SY+GYD+EDA+++NKS+ +RGFG V K + ++QK + ++
Sbjct: 752 NGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQK--RRRGEPVVHH 809
Query: 802 DRTGPGA----ERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857
PG+ E +Q LD DGL G IK D P+ TGQ
Sbjct: 810 FGFAPGSTPRREWLQKLDADGLPFIG--IKLED-----GDPIVAYYD--ESTGQ------ 854
Query: 858 SARQTYKGPDGETCVVDRVALCSDKNGDL-C--IKFLIRHTRRPELGDKFSSRHGQKGVC 914
+ +TY G E VD V L + GD C I +R TR P +GDKFSSRHGQKG+C
Sbjct: 855 NFIETYHGT--EPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGIC 912
Query: 915 GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 974
D PF+E G+ PD+I+NPH FPSRMT+G IE L GKAG G + F
Sbjct: 913 SQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIY- 971
Query: 975 SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1034
S + E LVK G++Y+G + +YSGITG ++A I++G +YYQ+L+HMV DK
Sbjct: 972 SEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQV 1031
Query: 1035 RGSGPRVMLTRQPTEGRARNGG 1056
R +GP LTRQP +GR R GG
Sbjct: 1032 RTTGPIHNLTRQPVKGRKRAGG 1053
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 757 (271.5 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 174/424 (41%), Positives = 243/424 (57%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E++ E+ +A E D P TTH E+ P +IL V+A LIP+ HNQSPRN YQ
Sbjct: 514 GRKEWIGTLEQVFMNVATMESDVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQ 573
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG +N R D+ LYLL PQ PL+ R + G D G N+ VAV+SY
Sbjct: 574 CQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISY 633
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG-PGAERMQI 813
SGYD+EDA+++NKSS +RGF V+K + AN D ++ R G P +
Sbjct: 634 SGYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEK-- 691
Query: 814 LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS-PTGQTDSRYRSARQTYKGPDGETCV 872
LD DGL G I++P D + S M+ TG+T + Y ++ + + C
Sbjct: 692 LDADGLPFVGSILQPGDPFY----------SYMNLNTGETFTVYYQNKEVGIVDNIKLCS 741
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
DR + K CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 742 NDRG---TGKFKKACIT--VRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTENGMVP 796
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G ++ + F ++ ++ ETLV G
Sbjct: 797 DILFNPHGFPSRMTIGMLIESMAGKSAALHGAYYDATPFTFTEKNS-ALKYFGETLVSAG 855
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +GPR +T QP +GR
Sbjct: 856 YNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRN 915
Query: 1053 RNGG 1056
GG
Sbjct: 916 VEGG 919
Score = 510 (184.6 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 169/580 (29%), Positives = 268/580 (46%)
Query: 242 IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC----ANLDIYTQEKALEYLEG 297
+P+ +KA+ +D ++ + + +D + + + E A YTQ+ LEYL G
Sbjct: 132 LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYL-G 190
Query: 298 KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
K R P +A +F + +H + R + FY+ M+ R + A +
Sbjct: 191 KSFRVKLNLPEWYSNEQAADF---IFNKCICIHLTD-RTEKFYLLCMMTRKLCAFAKGEC 246
Query: 358 MDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFI 414
M+D D + N+ + +GQL + ++ + + V+ ++ K + D + F
Sbjct: 247 MEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSLMKAFN 306
Query: 415 VRDSITVGLERTLSTGNFDVKRF--KMHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKS 470
+ +T E L+TGN K + G+ V +L+F+ L H + F +
Sbjct: 307 MTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQM 366
Query: 471 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD----EEEGPLISLCYCL 526
R + R L P WG LCP DTP+GE CGL+ ++ + + T+ + PL LC L
Sbjct: 367 RTTT-VRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPL--LC-AL 422
Query: 527 GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
GV ++ + V+ +G ++G V LRR KI + F +
Sbjct: 423 GVVPIDATPSRPY--AECYRVLLDGAVVGWVEWDLA-PQVAEALRRF-KITQ-EKRFPSR 477
Query: 587 KQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
+ V I G P L I ++ +K LL G + + L + + +
Sbjct: 478 AE-VVLIPMTGKPSLYPGLFIFTTPCRMVRP--VKNLLYGRKEWIGTLEQVFMNVATM-- 532
Query: 646 ENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
E++ + + TTH E+ P +IL V+A LIP+ HNQSPRN YQC MGKQ MG
Sbjct: 533 ESDVMPGV--------TTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFP 584
Query: 706 AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
+N R D+ LYLL PQ PL+ R + G D G N+ VAV+SYSGYD+EDA+++
Sbjct: 585 VYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIV 644
Query: 766 NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
NKSS +RGF V+K + AN D ++ R G
Sbjct: 645 NKSSWERGFAYGSVIKMESIDLSLKANRGGDNLVFGIRPG 684
Score = 176 (67.0 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 80/340 (23%), Positives = 142/340 (41%)
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
+G +PIM++S C LY EL + E + GGYFII G EKV+ + +N +
Sbjct: 19 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 78
Query: 201 TDKK----G-NINAXXXXXXXXXXXXXXIQMEKGKMY---LLLNQFVKK----IPIMVVM 248
T K G I M + +++N +K +P+ +
Sbjct: 79 TRHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVMVNFIFQKELFFLPLGFAL 138
Query: 249 KAMGMESDQEVVQMVGRDPRYSALLLPSIEEC----ANLDIYTQEKALEYLEGKVKRSTF 304
KA+ +D ++ + + +D + + + E A YTQ+ LEYL GK R
Sbjct: 139 KALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYL-GKSFRVKL 197
Query: 305 GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DY 363
P +A +F + +H + R + FY+ M+ R + A + M+D D
Sbjct: 198 NLPEWYSNEQAADF---IFNKCICIHLTD-RTEKFYLLCMMTRKLCAFAKGECMEDNPDS 253
Query: 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITV 421
+ N+ + +GQL + ++ + + V+ ++ K + D + F + +T
Sbjct: 254 LMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSLMKAFNMTTDVTK 313
Query: 422 GLERTLSTGNFDVKRF--KMHRKGMTQVLARLSFIGTLGH 459
E L+TGN K + G+ V +L+F+ L H
Sbjct: 314 SFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSH 353
Score = 45 (20.9 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 986 ETLVKHGFSYNGKDMIYSGITGCPLQAYI 1014
+ L+ HG S+ D ++S GC +AY+
Sbjct: 928 DALLAHGTSFLLHDRLFSCSDGC--EAYV 954
Score = 37 (18.1 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 54 YFVNTGIRKIVR 65
YF+ G+ K++R
Sbjct: 54 YFIINGLEKVIR 65
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 658 (236.7 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 162/406 (39%), Positives = 222/406 (54%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC-RMDSLLYLLV 721
TH+E P IL ++A L P+ NQSPRN YQC MGKQ MG LC R D+ LY L
Sbjct: 687 THVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV-ALCHRSDNKLYRLQ 745
Query: 722 YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
Q P++ + G D G NA VAV+SY+GYD++DA+++NKS+ +RGFG + K
Sbjct: 746 TGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK 805
Query: 782 KYT---AINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
A+N+ + + + P E ++ LD+DGL G Y+ + P
Sbjct: 806 TEKVDLALNRNRGDPITQHFGFGNDEWP-KEWLEKLDEDGLPYIG-------TYVEEGDP 857
Query: 839 LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD------LCIKFLI 892
+ D+ ++ +TY E ++ V L D++ + IK+ I
Sbjct: 858 ICAYFD--------DTLNKTKIKTYHS--SEPAYIEEVNLIGDESNKFQELQTVSIKYRI 907
Query: 893 RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 952
R T P++GDKFSSRHGQKGVC D PFSE GI PD+I+NPH FPSRMT+G +E
Sbjct: 908 RRT--PQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVE 965
Query: 953 LLGGKAGVSCGRFHYGSA--FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1010
L GKAG G + F E AD E L K G++Y+G + +YSG TG L
Sbjct: 966 SLAGKAGALHGIAQDSTPWIFNEDDTPADY---FGEQLAKAGYNYHGNEPMYSGATGEEL 1022
Query: 1011 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+A I++G +YYQ+L+HMV DK R +GP LT QP +GR R+GG
Sbjct: 1023 RADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGG 1068
Score = 233 (87.1 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 89/362 (24%), Positives = 171/362 (47%)
Query: 236 NQFVKKIPIMVVMKAMGMESDQEVVQ-MVGRDPRYS------ALLLPSIEE-CANLDIYT 287
N+++ +P+++++KA+ SD+E+ ++G D + S LLL ++ +L T
Sbjct: 267 NEYL--VPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRT 324
Query: 288 QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH--NNNFRPKCFYVAVML 345
Q L+YL K R F + P+ + + ++V V VH + + K + M+
Sbjct: 325 Q--VLQYLGDKF-RVVFQASPDQSD---LEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMI 378
Query: 346 RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF----EDLFKTMISEVQKTVDIILSK 401
R++ + + + D+ D ++ + L G L ++ ++ + +I++V+ ++ ++
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438
Query: 402 PSRSSRFDLSQFIVRDSITVG--LERTLSTGNF-DVKRFKMHR-KGMTQVLARLSFIGTL 457
+ R+ +S+ ++R + +G ++ LSTGN + + G T V +++F +
Sbjct: 439 NFKDKRY-MSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFI 497
Query: 458 GHMTRVSP-QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
H V F K + R L P WG LCP TP+G CGL+ + A ++T + +
Sbjct: 498 SHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSD 557
Query: 517 GPLI-SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLRRA 573
I S+ Y LGV S P+ V +G I+G H + K AD +R +
Sbjct: 558 VSRIPSILYSLGVAPA---SHTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVE 614
Query: 574 GK 575
GK
Sbjct: 615 GK 616
Score = 123 (48.4 bits), Expect = 2.1e-89, Sum P(3) = 2.1e-89
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 62 KIVRANDRIV-SG-IDPSIFLRFKDVRIGQPSMTVDGVSE----KLNPHMCRLSDMTYAA 115
K + + D I SG + + + + V I +P M+ DGVS K+ P R +Y
Sbjct: 77 KPLNSEDEISNSGYLGNKLSVSVEQVSIAKP-MSNDGVSSAVERKVYPSESRQRLTSYRG 135
Query: 116 PILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
+L+ +++ ++ E+ E D G +P+ML+S RC L EL + E + GG
Sbjct: 136 KLLLKLKW-SVNNGEENLFEVRDC--GGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGG 192
Query: 176 YFIIKGTEKVL-LIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLL 234
YFI+ G EK++ ++ Q + + I N A Q + +
Sbjct: 193 YFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHY 252
Query: 235 LN------QFV-KK----IPIMVVMKAMGMESDQEVVQ-MVGRDPRYSAL 272
LN +F +K +P+++++KA+ SD+E+ ++G D + S L
Sbjct: 253 LNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFL 302
Score = 40 (19.1 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 KQHLDSFN-YFVNTGIRKIVR 65
K+ D YF+ GI K++R
Sbjct: 184 KEESDEIGGYFIVNGIEKLIR 204
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 522 (188.8 bits), Expect = 1.5e-86, Sum P(2) = 1.5e-86
Identities = 211/774 (27%), Positives = 338/774 (43%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRA---NDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
V+ LVK H++SF+ V G+ ++V A + + G I L F + I PS++ G+
Sbjct: 34 VQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKG--DRISLSFVEAIIHTPSVSKGGI 91
Query: 98 SEKLN--PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
S L P CR TY A ++ ++ + V G K ++++ +G++PIM++S C
Sbjct: 92 SRDLRVFPAECRGRRCTYRAKLVADVSWSVNG--VPKGIIKQS---LGQMPIMVKSKLCN 146
Query: 155 LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI-IDTDK---KGN-INA 209
L+G EL E + GGYFI+ G EKV+ + +N I + K +G
Sbjct: 147 LHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQ 206
Query: 210 XXXXXXXXXXXXXXIQMEKGKM---YLLLNQFVKK----IPIMVVMKAMGMESDQEVVQM 262
I M + +++N +K +P+ +KA+ SD ++ Q
Sbjct: 207 YAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQE 266
Query: 263 V--GRDPR--YSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
+ GR+ Y + + + + T+ K L YL G+ R P +
Sbjct: 267 LIKGREDNSFYKSCVSEMLRIVMDQGCTTKIKVLNYL-GERFRVKLNLPEWFTHEQCAHF 325
Query: 319 LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVS 377
L D L +H K FY+ ++ R + + ++ M++ D + GQL
Sbjct: 326 LLDECLC---IHLKTDVEK-FYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYL 381
Query: 378 LLFEDLFKTMISEVQKTVDIILSKPSRSSRF---DLSQ-FIVRDSITVGLERTLSTGNFD 433
+ ++ + + V+ ++ KP R +++ F + +T E L+TGN
Sbjct: 382 MFLKEKMEGWLVSVKLALE---KKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLM 438
Query: 434 VKRF--KMHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCP 489
K + G+ V +L+FI L H V F K R + R L P WG LCP
Sbjct: 439 SKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT-VRKLLPESWGFLCP 497
Query: 490 CDTPEGEACGLVKNLALMTHVTTDE-EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
TP+GE CGL+ ++ + L L LGV + G+ + + VI
Sbjct: 498 VHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPGQAYSD--CYPVI 555
Query: 549 FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP-LVIA 607
+G ++G + + V+ LRR +GE V V + G P L +
Sbjct: 556 LDGAMIGWVEK-EVAPSVIESLRRFKVLGEKK---VPPWTEIVLVPQTGKASLYPGLYLF 611
Query: 608 DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
++ ++ L G + + YL+V + D TTH E+
Sbjct: 612 TTPCRMVRT--VRNLSLGKQELIGIFEQ---VYLNVGIFEKEI-----EDGV--TTHQEL 659
Query: 668 EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
P ++L V+A IP+ HNQSPRN YQC M KQ MG + R D+ LY L PQ PL
Sbjct: 660 FPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPL 719
Query: 728 LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
+ + D G NA VAV+SY+GYD+EDA+++NKSS +RGF V K
Sbjct: 720 VRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYK 773
Score = 491 (177.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 123/338 (36%), Positives = 179/338 (52%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + + E+ + ++E + TTH E+ P ++L V+A IP+ HNQSPRN YQ
Sbjct: 627 GKQELIGIFEQVYLNVGIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQ 686
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C M KQ MG + R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 687 CQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISY 746
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAERMQI 813
+GYD+EDA+++NKSS +RGF V K + +++K D I+ + G + M
Sbjct: 747 TGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGD--DSIVFGVKPGD-PKVMGK 803
Query: 814 LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 873
LD DGL G ++K D + G I TGQ+ + +++ + + C
Sbjct: 804 LDADGLPFIGSVLKYGDPFY---------GYISLNTGQSHVYFYKYQESCVVDNIKVCS- 853
Query: 874 DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 933
+ K +C+ R R P +GDKF+SRHGQKG+ + ED PF+E G+ PD
Sbjct: 854 NETGTGRFKR--ICVTS--RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPD 909
Query: 934 LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
++ NPHGFPSRMT+G +IE + GK+ G H + F
Sbjct: 910 ILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPF 947
Score = 431 (156.8 bits), Expect = 1.5e-86, Sum P(2) = 1.5e-86
Identities = 102/255 (40%), Positives = 141/255 (55%)
Query: 806 PGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 864
PG + M LD DGL G ++K D + G I TGQ+ + YK
Sbjct: 795 PGDPKVMGKLDADGLPFIGSVLKYGDPFY---------GYISLNTGQSHVYF------YK 839
Query: 865 GPDGETCVVDRVALCSDKNGDLCIKFLI---RHTRRPELGDKFSSRHGQKGVCGTIVQQE 921
E+CVVD + +CS++ G K + R R P +GDKF+SRHGQKG+ + E
Sbjct: 840 YQ--ESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAE 897
Query: 922 DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 981
D PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F S +
Sbjct: 898 DMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTF-SEENSAL 956
Query: 982 ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1041
E E L G++Y G + +YSG++G L+A IF+G +YYQ+L+HMV DK R +G R
Sbjct: 957 EHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1016
Query: 1042 MLTRQPTEGRARNGG 1056
+T QP GR GG
Sbjct: 1017 KVTNQPMGGRNVQGG 1031
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 647 (232.8 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 160/405 (39%), Positives = 220/405 (54%)
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
+H+E P IL ++A L P+ NQSPRN YQC MGKQ MG + R D+ LY L
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 721
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
Q P++ + G D G NA VAV+SY+GYD++DA+++NKS+ +RGFG V K
Sbjct: 722 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 781
Query: 783 YTAINQKYANSTSDRILRPDRTG----PGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
++ + D I + G P A + + LD DGL G ++ D +
Sbjct: 782 -EKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEK-LDADGLPLIGVKVEEGDPIVAYYD- 838
Query: 839 LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD-----LCIKFLIR 893
+T G T Y S+ Y ++ V L D + + + IK+ I
Sbjct: 839 -DTLGKTKVKT------YHSSEPAY---------IEEVKLLGDDSNEQEGQQITIKYRI- 881
Query: 894 HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 953
TR+P +GDKFSSRHGQKGVC Q D PF+E G+ PD+I+NPH FPSRMT+G +E
Sbjct: 882 -TRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVES 940
Query: 954 LGGKAGVSCGRFHYGSA--FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1011
L GKAG G + F E AD E L+K G++Y+G + +YSG TG L+
Sbjct: 941 LAGKAGALHGIAQDSTPWKFNEQDTPADY---FGEQLLKAGYNYHGNEPMYSGATGEELR 997
Query: 1012 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
I++G +YYQ+L+HMV DK R +GP LT QP +GR R+GG
Sbjct: 998 CDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGG 1042
Score = 246 (91.7 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 87/352 (24%), Positives = 164/352 (46%)
Query: 236 NQFVKKIPIMVVMKAMGMESDQEVVQ-MVGRDPRYSAL---LLPSIEECANLDIYTQEKA 291
N+F+ +P+++++KA+ +D+E+ +VG D S L L + ++Y+Q++
Sbjct: 248 NEFL--VPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQET 305
Query: 292 LEYLEGKVKRSTFGSPPN--DRE-GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRM 348
L YL K R FG+ P+ D E G+ +L+ + L ++P + + FR F M+R++
Sbjct: 306 LAYLGDKF-RVVFGASPDMSDIEVGK--EVLKRIVLVHLPNNADKFRMLLF----MIRKL 358
Query: 349 VEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF 408
+ A D+ D ++ + L G L ++ ++ + + ++ + +++ F
Sbjct: 359 YSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINF 417
Query: 409 DLSQFIVR------DSITVGLERTLSTGNF-DVKRFKMHR-KGMTQVLARLSFIGTLGHM 460
D +++ R ++I L+ LSTGN + + G T V +++F + H
Sbjct: 418 DDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHF 477
Query: 461 TRVSP-QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
V F K + R L P WG LCP TP+G CGL+ +L+ + T+ +
Sbjct: 478 RMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQ 537
Query: 520 ISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMR 568
+ LGV + + PN V +G I+G H + + AD +R
Sbjct: 538 VPKALTQLGVLPADSFAA----GPNLCCVQLDGKIVGWTTHEQGRIVADTLR 585
Score = 207 (77.9 bits), Expect = 4.7e-77, Sum P(2) = 4.7e-77
Identities = 81/357 (22%), Positives = 164/357 (45%)
Query: 80 LRFKDVRIGQPSMTVD---GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
+R V++ +PS+ + ++ K P CR +TY + +++N+ + + E+ E
Sbjct: 79 IRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTW--SVNDEEEVSEV 136
Query: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL-LIQEQLSKN 195
+ G+IPIML+S RC L +L E + GGYFI+ G EK++ ++ Q +
Sbjct: 137 REA--GQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNH 194
Query: 196 RVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLN------QFV-KK----IPI 244
+ I GN A Q + + LN +F +K +P+
Sbjct: 195 PMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPV 254
Query: 245 MVVMKAMGMESDQEVVQ-MVGRDPRYSAL---LLPSIEECANLDIYTQEKALEYLEGKVK 300
++++KA+ +D+E+ +VG D S L L + ++Y+Q++ L YL K
Sbjct: 255 VMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKF- 313
Query: 301 RSTFGSPPNDREGRAFS-ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
R FG+ P+ + +L+ + L ++P + + FR F M+R++ + A D
Sbjct: 314 RVVFGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLF----MIRKLYSLVAGDCAPD 369
Query: 360 DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
+ D ++ + L G L ++ ++ + + ++ + +++ FD +++ R
Sbjct: 370 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINFDDRKYMTR 425
Score = 47 (21.6 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 3 LMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLV--KQHLDSFN-YFVNTG 59
++ V S DE+ + + A + ++ + E L LV K+ D YF+ G
Sbjct: 120 MLNVTWSVNDEEEVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNG 179
Query: 60 IRKIVR 65
I K++R
Sbjct: 180 IEKLIR 185
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 685 (246.2 bits), Expect = 2.4e-81, Sum P(2) = 2.4e-81
Identities = 165/427 (38%), Positives = 233/427 (54%)
Query: 633 LREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
L G E + E+ +A++E + +TH E+ P ++L VIA IP+ HNQSPRN
Sbjct: 626 LELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRN 685
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
YQC MGKQ MG R D+ LY L PQ PL+ + D G NA VAV
Sbjct: 686 MYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAV 745
Query: 752 MSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER 810
+SY+GYD+EDA+++NK+S +RGF V K ++ +++K+ + + PG R
Sbjct: 746 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFG---VKPGDPR 802
Query: 811 -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
MQ LDDDGL G ++ D Y S L TG+ Y +++ + +
Sbjct: 803 VMQKLDDDGLPFIGAKLEYGDPYY---SYLNLN------TGEGFVVYYKSKENCVVDNIK 853
Query: 870 TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
C D + S K +CI +R R P +GDKF+SRHGQKG+ + ED PF+E G
Sbjct: 854 VCSND---MGSGKFKCICIT--VRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESG 908
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L
Sbjct: 909 MMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLK 967
Query: 990 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1049
G+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP
Sbjct: 968 AAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLG 1027
Query: 1050 GRARNGG 1056
GR GG
Sbjct: 1028 GRNVQGG 1034
Score = 434 (157.8 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 165/615 (26%), Positives = 279/615 (45%)
Query: 233 LLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI--- 285
++LN +K +P+ +KA+ SD ++ Q + + + S+ + + I
Sbjct: 234 VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEG 293
Query: 286 -YTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
++Q++ L YL G+ R P PN E F +L + +H + K FY+
Sbjct: 294 CHSQKQVLNYL-GECFRVKLSLPDWYPNV-EAAEF-LLNQC----ICIHLQSNTDK-FYL 345
Query: 342 AVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
++ R + A+ + MDD D + N+ + GQL + ++ + + ++ +D
Sbjct: 346 LCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQ 405
Query: 401 KPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGT 456
K + S + + F + +T E L+TGN K + G+ V +L+F+
Sbjct: 406 KANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRY 465
Query: 457 LGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
L H V F K R + R L P WG LCP TP+G CGL+ +L + V T
Sbjct: 466 LSHFRCVHRGAAFAKMRTTT-VRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKF 524
Query: 515 EEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPKCFADVMRKL 570
I C LGV ++ + + V+ +G+++G K P+ AD +R+
Sbjct: 525 VYTASIPALLCGLGVTPVDTAPCRPYSD--CYPVLLDGVMVGWVDKDLAPEV-ADTLRRF 581
Query: 571 R--RAGKIGEFVSVFV---NEKQRC---VYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622
+ R +I ++ V + K +++ + R+ RP+ + G + M++L
Sbjct: 582 KVLREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREELIGT-MEQL 640
Query: 623 LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPY 682
V F+D + G+ +TH E+ P ++L VIA IP+
Sbjct: 641 FMNVAIFEDEVFGGI------------------------STHQELFPHSLLSVIANFIPF 676
Query: 683 PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+ + D
Sbjct: 677 SDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYP 736
Query: 743 AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRP 801
G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K+ D ++
Sbjct: 737 IGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQG-EDNLVFG 795
Query: 802 DRTGPGAERMQILDD 816
+ G ++ DD
Sbjct: 796 VKPGDPRVMQKLDDD 810
Score = 204 (76.9 bits), Expect = 2.4e-81, Sum P(2) = 2.4e-81
Identities = 109/463 (23%), Positives = 188/463 (40%)
Query: 25 VKSVVD-KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFL 80
+K + D + + PE K ++ L + H+DSFNY G+ V+A D I L
Sbjct: 16 LKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISL 75
Query: 81 RFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKN 137
D I PS+ + + LN P CR TY + +I + V G K +++
Sbjct: 76 TIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNG--VPKGIIKQ- 132
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+G +PIM++S C LY L E + GGYFII G EKV+ + +N
Sbjct: 133 --FLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFP 190
Query: 198 IIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMYL--------LLNQFVKK----IPIM 245
I K + M L +LN +K +P+
Sbjct: 191 IAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLG 250
Query: 246 VVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKR 301
+KA+ SD ++ Q + + + S+ + + I ++Q++ L YL G+ R
Sbjct: 251 FALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYL-GECFR 309
Query: 302 STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
P A L + + +H + K FY+ ++ R + A+ + MDD
Sbjct: 310 VKLSLPDWYPNVEAAEFLLNQCIC---IHLQSNTDK-FYLLCLMTRKLFALARGECMDDN 365
Query: 362 -DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
D + N+ + GQL + ++ + + ++ +D K + S + + F +
Sbjct: 366 PDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425
Query: 419 ITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTLGH 459
+T E L+TGN K + G+ V +L+F+ L H
Sbjct: 426 LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSH 468
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 688 (247.2 bits), Expect = 4.4e-81, Sum P(2) = 4.4e-81
Identities = 165/428 (38%), Positives = 230/428 (53%)
Query: 633 LREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
L G E + E+ IA++E + TTH E+ P ++L VIA IP+ HNQSPRN
Sbjct: 626 LELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRN 685
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
YQC MGKQ MG R D+ LY L PQ PL+ + D G NA VAV
Sbjct: 686 MYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 745
Query: 752 MSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER 810
+SY+GYD+EDA+++NK+S +RGF V K ++ +++K + PG R
Sbjct: 746 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFG---VKPGDPR 802
Query: 811 -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
+Q LDDDGL G ++ D Y S L TG++ Y +++ + +
Sbjct: 803 ILQKLDDDGLPFIGARLQYGDPYY---SYLNLN------TGESFVTYYKSKENCIVDNIK 853
Query: 870 TCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 928
C D NG C+ +R R P +GDKF+SRHGQKG+ + ED PF+E
Sbjct: 854 VCSNDT------GNGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTES 907
Query: 929 GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 988
G+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L
Sbjct: 908 GMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTF-SEENSALEYFGELL 966
Query: 989 VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1048
G+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP
Sbjct: 967 KAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPI 1026
Query: 1049 EGRARNGG 1056
GR GG
Sbjct: 1027 GGRNVQGG 1034
Score = 440 (159.9 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 165/598 (27%), Positives = 276/598 (46%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + S+ +
Sbjct: 229 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQML 286
Query: 282 NLDIY----TQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLAN--VPVHNNN 333
+ + TQ++ L YL +VK S PN++ FL N + +H +
Sbjct: 287 RIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAE--------FLFNQCICIHLKS 338
Query: 334 FRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
K FY+ ++ R + A+ + M+D D + N+ + GQL + ++ ++ + ++
Sbjct: 339 NTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIK 397
Query: 393 KTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQVL 448
+D K + S + + F + +T E L+TGN K + G+ V
Sbjct: 398 IALDKRSQKTNVSINTENLMRIFNLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVA 457
Query: 449 ARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 458 DKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLTA 516
Query: 507 MTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNS--FLVIFNGLILG---KHRRP 560
+ V T + C LGV ++ G H P S + V+ +G+++G K P
Sbjct: 517 VCEVVTQCVYTASVPTLLCSLGVTPVD---GAP-HRPYSECYPVLLDGVMVGWVDKELAP 572
Query: 561 KCFADVMR--KLRRAGKIGEFVSVFV---NEKQRC---VYIASDGGRVCRPLVIADKGIS 612
A+ +R K+ + +I ++ V + K +++ + R+ RP+ + G
Sbjct: 573 S-IAESLRHFKVLKEKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKE 631
Query: 613 RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
+ M+++ + F+D + G+ TTH E+ P ++
Sbjct: 632 ELIGT-MEQIFMNIAIFEDEVLAGV------------------------TTHQELFPHSL 666
Query: 673 LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
L VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 667 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVRPYM 726
Query: 733 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQK 789
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K
Sbjct: 727 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEK 784
Score = 198 (74.8 bits), Expect = 4.4e-81, Sum P(2) = 4.4e-81
Identities = 105/441 (23%), Positives = 180/441 (40%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V G+ V+A D I L D I P + + ++LN
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICKELN 97
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G IPIM++S C L+
Sbjct: 98 IYPAECRGRRSTYRGKLTADISWAVNG--ISKGIIKQ---FLGYIPIMVKSKLCNLHSLP 152
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXX 219
L E + GGYFII G EKV+ + +N I K
Sbjct: 153 PKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 220 XXXXIQMEKGKM---YL-----LLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDP 267
+ M YL +LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGK 272
Query: 268 RYSALLLPSIEECANLDIY----TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
+ S+ + + + TQ++ L YL G+ R P +A L F
Sbjct: 273 EEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYL-GERFRVKLSLPDWYPNEQAAEFL---F 328
Query: 324 LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFED 382
+ +H + K FY+ ++ R + A+ + M+D D + N+ + GQL + ++
Sbjct: 329 NQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKE 387
Query: 383 LFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK-- 438
++ + ++ +D K + S + + F + +T E L+TGN K
Sbjct: 388 KMESWLVSIKIALDKRSQKTNVSINTENLMRIFNLGTDLTKPFEYLLATGNLRSKTGLGF 447
Query: 439 MHRKGMTQVLARLSFIGTLGH 459
+ G+ V +L+FI L H
Sbjct: 448 LQDSGLCVVADKLNFIRYLSH 468
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 673 (242.0 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 162/427 (37%), Positives = 228/427 (53%)
Query: 633 LREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
L G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN
Sbjct: 626 LELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRN 685
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
YQC MGKQ MG R D+ LY L PQ PL+ + D G NA VAV
Sbjct: 686 MYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 745
Query: 752 MSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER 810
+SY+GYD+EDA+++NK+S +RGF V K ++ ++++ + PG R
Sbjct: 746 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFG---VKPGDPR 802
Query: 811 -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
+Q LD+DGL G +K D Y S L TG+ Y +++ + +
Sbjct: 803 VLQKLDNDGLPFIGAQLKYGDPYY---SYLNLN------TGEGFVMYYKSKENCIVDNIK 853
Query: 870 TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
C D + C+ +R R P +GDKF+SRHGQKG+ + ED PF+E G
Sbjct: 854 VCSND-----TGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESG 908
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L
Sbjct: 909 MVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLK 967
Query: 990 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1049
G++Y G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP
Sbjct: 968 AAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIG 1027
Query: 1050 GRARNGG 1056
GR GG
Sbjct: 1028 GRNVQGG 1034
Score = 444 (161.4 bits), Expect = 4.6e-38, P = 4.6e-38
Identities = 168/589 (28%), Positives = 269/589 (45%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + S+ +
Sbjct: 229 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQML 286
Query: 282 NLDIY----TQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLAN--VPVHNNN 333
+ + TQ++ L YL +VK S PN++ FL N + +H +
Sbjct: 287 RIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNEQAAE--------FLFNQCICIHLKS 338
Query: 334 FRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
K FY+ ++ R + A+ + M++ D + N+ + GQL + ++ + + ++
Sbjct: 339 NTEK-FYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIK 397
Query: 393 KTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQVL 448
+D K + S + + F + +T E L+TGN K + G+ V
Sbjct: 398 IAIDKKSQKTNVSLNSENLMKIFSLGIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVA 457
Query: 449 ARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 458 DKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLTA 516
Query: 507 MTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNS--FLVIFNGLILG---KHRRP 560
+ V T I C LGV ++ G H P S + V+ +G+++G K P
Sbjct: 517 ICEVVTQSVYTASIPALLCNLGVTPVD---GTP-HRPYSECYPVLLDGVMIGWADKEIAP 572
Query: 561 KCFADVMR--KLRRAGKIGEFVSVFV---NEKQRC---VYIASDGGRVCRPLVIADKGIS 612
AD +R K+ R +I ++ V + K +Y+ + R+ RP+ + G
Sbjct: 573 G-IADSLRHFKVLREKRIPPWMEVALIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKE 631
Query: 613 RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
+ M+++ V F+D + G+ TTH E+ P ++
Sbjct: 632 ELIGT-MEQIFMNVAIFEDEVLAGV------------------------TTHQELFPHSL 666
Query: 673 LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
L VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 667 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYM 726
Query: 733 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K
Sbjct: 727 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 775
Score = 202 (76.2 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 104/441 (23%), Positives = 180/441 (40%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V G+ V+A D I L D I P++ + ++LN
Sbjct: 38 LTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERICLTIVDAVISPPAVPKGSICKELN 97
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G +PIM++S C LY
Sbjct: 98 VYPAECRGRRSTYRGKLTADISWSVNG--ISKGVIKQ---FLGYVPIMVKSKLCNLYNLP 152
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXX 219
L E + GGYFII G EKV+ + +N I K
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212
Query: 220 XXXXIQMEKGKM---YL-----LLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDP 267
+ M YL +LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGK 272
Query: 268 RYSALLLPSIEECANLDIY----TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
+ S+ + + + TQ++ L YL G+ R P +A L F
Sbjct: 273 EDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYL-GERFRVKLSLPDWYPNEQAAEFL---F 328
Query: 324 LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFED 382
+ +H + K FY+ ++ R + A+ + M++ D + N+ + GQL + ++
Sbjct: 329 NQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKE 387
Query: 383 LFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK-- 438
+ + ++ +D K + S + + F + +T E L+TGN K
Sbjct: 388 KLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGIDLTKPFEYLLATGNLRSKTGLGF 447
Query: 439 MHRKGMTQVLARLSFIGTLGH 459
+ G+ V +L+FI L H
Sbjct: 448 LQDSGLCVVADKLNFIRYLSH 468
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 684 (245.8 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 165/424 (38%), Positives = 231/424 (54%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN YQ
Sbjct: 629 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 688
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 689 CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 748
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQ 812
+GYD+EDA+++NK+S +RGF V K ++ +++K S + PG R +Q
Sbjct: 749 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFG---IKPGDPRVLQ 805
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
LDDDGL G ++ D Y S L TG++ Y +++ + + C
Sbjct: 806 KLDDDGLPFIGAKLQYGDPYY---SYLNLN------TGESFVMYYKSKENCVVDNIKVCS 856
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
D S K +CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 857 NDTG---SGKFKCVCIT--MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 911
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L G
Sbjct: 912 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAG 970
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP GR
Sbjct: 971 YNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 1030
Query: 1053 RNGG 1056
GG
Sbjct: 1031 VQGG 1034
Score = 446 (162.1 bits), Expect = 2.8e-38, P = 2.8e-38
Identities = 171/606 (28%), Positives = 276/606 (45%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + L S+ +
Sbjct: 229 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQML 286
Query: 282 NLDIY----TQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFLAN--VPVHNN 332
+ + TQ++ L YL G+ R P PN++ FL N + +H
Sbjct: 287 RIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE--------FLFNQCICIHLK 337
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
+ K FY+ ++ R + A+ + M+D D + N+ + GQL + ++ + + +
Sbjct: 338 SNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSI 396
Query: 392 QKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQV 447
+ D K S S D + F + +T E +TGN K + G+ V
Sbjct: 397 KIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVV 456
Query: 448 LARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 457 ADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLT 515
Query: 506 LMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPK 561
+ V T I C LGV ++ + V+ +G+++G K P
Sbjct: 516 AVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVGWVDKDLAPG 573
Query: 562 CFADVMR--KLRRAGKIG---EFVSVFVNEKQRC---VYIASDGGRVCRPLVIADKGISR 613
AD +R K+ R +I E V + + K +++ + R+ RP+ + ++
Sbjct: 574 -IADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV----QNLAL 628
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
KE EL+ + F+ + E +E ++ G TTH E+ P ++L
Sbjct: 629 GKE----ELIGTMEQI--FMNVAIFE-----DE------VFAGV----TTHQELFPHSLL 667
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 668 SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMY 727
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYAN 792
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 787
Query: 793 STSDRI 798
S +
Sbjct: 788 GDSSLV 793
Score = 189 (71.6 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 104/441 (23%), Positives = 177/441 (40%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V+ G+ V+A D I D I P++ + ++ N
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEAN 97
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G +PIM++S C L
Sbjct: 98 VYPAECRGRRSTYRGKLTADINWAVNG--ISKGIIKQ---FLGYVPIMVKSKLCNLRNLP 152
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXX 219
L E + GGYFII G EKV+ + +N I K
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 220 XXXXIQMEKGKM---YL-----LLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDP 267
+ M YL +LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGK 272
Query: 268 RYSALLLPSIEECANLDIY----TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
+ L S+ + + + TQ++ L YL G+ R P +A L F
Sbjct: 273 EDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAEFL---F 328
Query: 324 LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFED 382
+ +H + K FY+ ++ R + A+ + M+D D + N+ + GQL + ++
Sbjct: 329 NQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKE 387
Query: 383 LFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK-- 438
+ + ++ D K S S D + F + +T E +TGN K
Sbjct: 388 KLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGL 447
Query: 439 MHRKGMTQVLARLSFIGTLGH 459
+ G+ V +L+FI L H
Sbjct: 448 LQDSGLCVVADKLNFIRYLSH 468
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 684 (245.8 bits), Expect = 1.7e-79, Sum P(2) = 1.7e-79
Identities = 165/424 (38%), Positives = 231/424 (54%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN YQ
Sbjct: 667 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 726
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 727 CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 786
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQ 812
+GYD+EDA+++NK+S +RGF V K ++ +++K S + PG R +Q
Sbjct: 787 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFG---IKPGDPRVLQ 843
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
LDDDGL G ++ D Y S L TG++ Y +++ + + C
Sbjct: 844 KLDDDGLPFIGAKLQYGDPYY---SYLNLN------TGESFVMYYKSKENCVVDNIKVCS 894
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
D S K +CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 895 NDTG---SGKFKCVCIT--MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 949
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L G
Sbjct: 950 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAG 1008
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP GR
Sbjct: 1009 YNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 1068
Query: 1053 RNGG 1056
GG
Sbjct: 1069 VQGG 1072
Score = 446 (162.1 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 171/606 (28%), Positives = 276/606 (45%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + L S+ +
Sbjct: 267 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQML 324
Query: 282 NLDIY----TQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFLAN--VPVHNN 332
+ + TQ++ L YL G+ R P PN++ FL N + +H
Sbjct: 325 RIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE--------FLFNQCICIHLK 375
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
+ K FY+ ++ R + A+ + M+D D + N+ + GQL + ++ + + +
Sbjct: 376 SNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSI 434
Query: 392 QKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQV 447
+ D K S S D + F + +T E +TGN K + G+ V
Sbjct: 435 KIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVV 494
Query: 448 LARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 495 ADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLT 553
Query: 506 LMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPK 561
+ V T I C LGV ++ + V+ +G+++G K P
Sbjct: 554 AVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVGWVDKDLAPG 611
Query: 562 CFADVMR--KLRRAGKIG---EFVSVFVNEKQRC---VYIASDGGRVCRPLVIADKGISR 613
AD +R K+ R +I E V + + K +++ + R+ RP+ + ++
Sbjct: 612 -IADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV----QNLAL 666
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
KE EL+ + F+ + E +E ++ G TTH E+ P ++L
Sbjct: 667 GKE----ELIGTMEQI--FMNVAIFE-----DE------VFAGV----TTHQELFPHSLL 705
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 706 SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMY 765
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYAN 792
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K
Sbjct: 766 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 825
Query: 793 STSDRI 798
S +
Sbjct: 826 GDSSLV 831
Score = 189 (71.6 bits), Expect = 1.7e-79, Sum P(2) = 1.7e-79
Identities = 104/441 (23%), Positives = 177/441 (40%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V+ G+ V+A D I D I P++ + ++ N
Sbjct: 76 LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEAN 135
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G +PIM++S C L
Sbjct: 136 VYPAECRGRRSTYRGKLTADINWAVNG--ISKGIIKQ---FLGYVPIMVKSKLCNLRNLP 190
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXX 219
L E + GGYFII G EKV+ + +N I K
Sbjct: 191 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 250
Query: 220 XXXXIQMEKGKM---YL-----LLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDP 267
+ M YL +LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 251 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGK 310
Query: 268 RYSALLLPSIEECANLDIY----TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
+ L S+ + + + TQ++ L YL G+ R P +A L F
Sbjct: 311 EDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAEFL---F 366
Query: 324 LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFED 382
+ +H + K FY+ ++ R + A+ + M+D D + N+ + GQL + ++
Sbjct: 367 NQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKE 425
Query: 383 LFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK-- 438
+ + ++ D K S S D + F + +T E +TGN K
Sbjct: 426 KLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGL 485
Query: 439 MHRKGMTQVLARLSFIGTLGH 459
+ G+ V +L+FI L H
Sbjct: 486 LQDSGLCVVADKLNFIRYLSH 506
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 494 (179.0 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 127/338 (37%), Positives = 181/338 (53%)
Query: 640 YLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
Y+D +E N I +YE ++E++ + L +A L P+ HNQSPRN YQC M K
Sbjct: 911 YIDSDENIN--IDMYE-QIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLK 967
Query: 700 QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
Q MG + N + + +Y ++ PQ PL+ TR E G D +G NA VA+++Y+GYD+
Sbjct: 968 QTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDM 1027
Query: 760 EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD------RILRPDRTGPG----AE 809
EDA+++NK+S DRG R + K QK S++ R L ++
Sbjct: 1028 EDALIINKASADRGIFRTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYEN 1087
Query: 810 RMQILDDDGLAAPGEII---KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP 866
+ + L+ DGL + I P YINK + L T Y S R
Sbjct: 1088 KGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTT--------------YESFRN----- 1128
Query: 867 DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 926
GE VD V++ + + + + L R TR+P++GDKF+SRHGQKGV + QED PF+
Sbjct: 1129 HGEY-FVDFVSIGKNNSNQVAVVKL-RSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFA 1186
Query: 927 ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
E GI PD+I NPHG PSRMT+G +IE + GKA G+
Sbjct: 1187 ESGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGK 1224
Score = 202 (76.2 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 35/78 (44%), Positives = 54/78 (69%)
Query: 979 DTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSG 1038
+ ++ ++ L+ G+ Y G +++YSGI G PLQA+IF+G IYYQ+L+HM DK R +G
Sbjct: 1326 EKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTG 1385
Query: 1039 PRVMLTRQPTEGRARNGG 1056
P LT QP +G+ ++GG
Sbjct: 1386 PVCNLTHQPLKGKRKHGG 1403
Score = 174 (66.3 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 83/369 (22%), Positives = 159/369 (43%)
Query: 44 LVKQHLDSFNYFVNTGIRKIV----------RANDRIVSGIDP--SIFLRF--KDVRIGQ 89
LV+ H+D FN F+N I+ I + N+ + ++ S ++F D++I
Sbjct: 71 LVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQIKN 130
Query: 90 PSMTVDGVSEKLN-PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
P + D + + P++C+LS TY +L+ I TT + G IPIM+
Sbjct: 131 PMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQYKDEIASTT-----ICAGHIPIMI 185
Query: 149 RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
S C L ++ ELA+ GE GG+F++ G KV+ N ++++ D K +IN
Sbjct: 186 MSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVIRYVIHPKYNTLLLNADNKIHIN 245
Query: 209 AXXXXXXXXXXXXXXIQMEKGKMYLLLNQF---VKKIPIMVVMKAMG-MESDQEVVQMV- 263
+ + + Y+ +F V +P +++ + ++ + +
Sbjct: 246 CLLNDNTVVINF---LTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPIKKKSYIFNKIK 302
Query: 264 -GRDP----RYSALLLPSI--EECANLDIYTQEKALEYLEGKV---KRSTFGSPPNDREG 313
G + +Y L + SI ++ N ++ L YL G++ +R F N E
Sbjct: 303 LGVENENAIKYIELFINSIFLKDTFNEKELFEKYNLSYL-GRIAYLRRGIFKYNLNCYEK 361
Query: 314 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
+A IL+ L ++ ++ F CF M ++++ + +KD + N +
Sbjct: 362 KAKDILKYCILPHIKNNSEKFETMCF----MFKKLIYSNFKLITPINKDSLENHAVTTCS 417
Query: 374 QLVSLLFED 382
L++ L +D
Sbjct: 418 NLLANLLKD 426
Score = 115 (45.5 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 50/210 (23%), Positives = 93/210 (44%)
Query: 467 FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV-TTDEEEGPLISL-CY 524
F + KV PR L WG +CP TP+G CGL+ +LA H+ E +++ Y
Sbjct: 598 FFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLY 657
Query: 525 C--LGVE-DLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF- 579
+G+ +L+ SG +++ + +I + + + + K F + KL+ A F
Sbjct: 658 LKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPI-TYIGEKDFNRTVYKLKYAKNNNLFN 716
Query: 580 ------VSVFVNEK--QRCVYIASDGGRVCRPLV-IADKGISRIKEHHMKELLDGVRSFD 630
++ ++NE + I + GR+ RPL+ + K I I + + + + +
Sbjct: 717 LKSYFEINAYLNEPLIMNSIIINTFPGRLIRPLLNLKTKDIEFISPSYQPYISVAINN-E 775
Query: 631 DFLREGLIEYLDVNEENNALIALYEGDATP 660
D + L L +E ++ + D TP
Sbjct: 776 DVKKNNLARKLLKKKEQ--VVNSMKIDRTP 803
Score = 50 (22.7 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 607 ADKGISRIKEHHMKEL-LDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
AD+GI R + + + L V +F+ I YL+ N+ NN +A YE
Sbjct: 1038 ADRGIFRTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLA-YE 1086
Score = 46 (21.3 bits), Expect = 2.0e-58, Sum P(3) = 2.0e-58
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 256 DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQ-EKALEYLEGKVKRSTF 304
D + + G D S +E N+D+Y Q + EY+E +K ++F
Sbjct: 893 DSKSDNISGSDNNMSTTTYIDSDENINIDMYEQIPQKFEYME--LKETSF 940
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 51 SFN--YFVNTGIRKIVRANDRIVSGID 75
SFN + N GI+ + ND I S +D
Sbjct: 1239 SFNNPWIDNCGIKGFLEKNDTIKSDLD 1265
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 494 (179.0 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 127/338 (37%), Positives = 181/338 (53%)
Query: 640 YLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
Y+D +E N I +YE ++E++ + L +A L P+ HNQSPRN YQC M K
Sbjct: 911 YIDSDENIN--IDMYE-QIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLK 967
Query: 700 QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
Q MG + N + + +Y ++ PQ PL+ TR E G D +G NA VA+++Y+GYD+
Sbjct: 968 QTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDM 1027
Query: 760 EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD------RILRPDRTGPG----AE 809
EDA+++NK+S DRG R + K QK S++ R L ++
Sbjct: 1028 EDALIINKASADRGIFRTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYEN 1087
Query: 810 RMQILDDDGLAAPGEII---KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP 866
+ + L+ DGL + I P YINK + L T Y S R
Sbjct: 1088 KGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTT--------------YESFRN----- 1128
Query: 867 DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 926
GE VD V++ + + + + L R TR+P++GDKF+SRHGQKGV + QED PF+
Sbjct: 1129 HGEY-FVDFVSIGKNNSNQVAVVKL-RSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFA 1186
Query: 927 ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
E GI PD+I NPHG PSRMT+G +IE + GKA G+
Sbjct: 1187 ESGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGK 1224
Score = 202 (76.2 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 35/78 (44%), Positives = 54/78 (69%)
Query: 979 DTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSG 1038
+ ++ ++ L+ G+ Y G +++YSGI G PLQA+IF+G IYYQ+L+HM DK R +G
Sbjct: 1326 EKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTG 1385
Query: 1039 PRVMLTRQPTEGRARNGG 1056
P LT QP +G+ ++GG
Sbjct: 1386 PVCNLTHQPLKGKRKHGG 1403
Score = 174 (66.3 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 83/369 (22%), Positives = 159/369 (43%)
Query: 44 LVKQHLDSFNYFVNTGIRKIV----------RANDRIVSGIDP--SIFLRF--KDVRIGQ 89
LV+ H+D FN F+N I+ I + N+ + ++ S ++F D++I
Sbjct: 71 LVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVSDIQIKN 130
Query: 90 PSMTVDGVSEKLN-PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
P + D + + P++C+LS TY +L+ I TT + G IPIM+
Sbjct: 131 PMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQYKDEIASTT-----ICAGHIPIMI 185
Query: 149 RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
S C L ++ ELA+ GE GG+F++ G KV+ N ++++ D K +IN
Sbjct: 186 MSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVIRYVIHPKYNTLLLNADNKIHIN 245
Query: 209 AXXXXXXXXXXXXXXIQMEKGKMYLLLNQF---VKKIPIMVVMKAMG-MESDQEVVQMV- 263
+ + + Y+ +F V +P +++ + ++ + +
Sbjct: 246 CLLNDNTVVINF---LTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPIKKKSYIFNKIK 302
Query: 264 -GRDP----RYSALLLPSI--EECANLDIYTQEKALEYLEGKV---KRSTFGSPPNDREG 313
G + +Y L + SI ++ N ++ L YL G++ +R F N E
Sbjct: 303 LGVENENAIKYIELFINSIFLKDTFNEKELFEKYNLSYL-GRIAYLRRGIFKYNLNCYEK 361
Query: 314 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
+A IL+ L ++ ++ F CF M ++++ + +KD + N +
Sbjct: 362 KAKDILKYCILPHIKNNSEKFETMCF----MFKKLIYSNFKLITPINKDSLENHAVTTCS 417
Query: 374 QLVSLLFED 382
L++ L +D
Sbjct: 418 NLLANLLKD 426
Score = 115 (45.5 bits), Expect = 5.2e-79, Sum P(4) = 5.2e-79
Identities = 50/210 (23%), Positives = 93/210 (44%)
Query: 467 FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV-TTDEEEGPLISL-CY 524
F + KV PR L WG +CP TP+G CGL+ +LA H+ E +++ Y
Sbjct: 598 FFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLY 657
Query: 525 C--LGVE-DLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF- 579
+G+ +L+ SG +++ + +I + + + + K F + KL+ A F
Sbjct: 658 LKKIGINVNLDDTSGIHTIYDDENIPIIVDSIPI-TYIGEKDFNRTVYKLKYAKNNNLFN 716
Query: 580 ------VSVFVNEK--QRCVYIASDGGRVCRPLV-IADKGISRIKEHHMKELLDGVRSFD 630
++ ++NE + I + GR+ RPL+ + K I I + + + + +
Sbjct: 717 LKSYFEINAYLNEPLIMNSIIINTFPGRLIRPLLNLKTKDIEFISPSYQPYISVAINN-E 775
Query: 631 DFLREGLIEYLDVNEENNALIALYEGDATP 660
D + L L +E ++ + D TP
Sbjct: 776 DVKKNNLARKLLKKKEQ--VVNSMKIDRTP 803
Score = 50 (22.7 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 607 ADKGISRIKEHHMKEL-LDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
AD+GI R + + + L V +F+ I YL+ N+ NN +A YE
Sbjct: 1038 ADRGIFRTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLA-YE 1086
Score = 46 (21.3 bits), Expect = 2.0e-58, Sum P(3) = 2.0e-58
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 256 DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQ-EKALEYLEGKVKRSTF 304
D + + G D S +E N+D+Y Q + EY+E +K ++F
Sbjct: 893 DSKSDNISGSDNNMSTTTYIDSDENINIDMYEQIPQKFEYME--LKETSF 940
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 51 SFN--YFVNTGIRKIVRANDRIVSGID 75
SFN + N GI+ + ND I S +D
Sbjct: 1239 SFNNPWIDNCGIKGFLEKNDTIKSDLD 1265
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 684 (245.8 bits), Expect = 3.9e-78, Sum P(2) = 3.9e-78
Identities = 165/424 (38%), Positives = 231/424 (54%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN YQ
Sbjct: 446 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 505
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 506 CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 565
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQ 812
+GYD+EDA+++NK+S +RGF V K ++ +++K S + PG R +Q
Sbjct: 566 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFG---IKPGDPRVLQ 622
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
LDDDGL G ++ D Y S L TG++ Y +++ + + C
Sbjct: 623 KLDDDGLPFIGAKLQYGDPYY---SYLNLN------TGESFVMYYKSKENCVVDNIKVCS 673
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
D S K +CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 674 NDTG---SGKFKCVCIT--MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 728
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L G
Sbjct: 729 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAG 787
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP GR
Sbjct: 788 YNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 847
Query: 1053 RNGG 1056
GG
Sbjct: 848 VQGG 851
Score = 157 (60.3 bits), Expect = 3.9e-78, Sum P(2) = 3.9e-78
Identities = 89/363 (24%), Positives = 149/363 (41%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V+ G+ V+A D I D I P++ + ++ N
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEAN 97
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G +PIM++S C L
Sbjct: 98 VYPAECRGRRSTYRGKLTADINWAVNG--ISKGIIKQ---FLGYVPIMVKSKLCNLRNLP 152
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXX 219
L E + GGYFII G EKV+ + +N I K
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 220 XXXXIQMEKGKM---YL-----LLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDP 267
+ M YL +LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGK 272
Query: 268 RYSALLLPSIEECANLDIY----TQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILR 320
+ L S+ + + + TQ++ L YL G+ R P PN++
Sbjct: 273 EDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE------ 325
Query: 321 DVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVS 377
FL N + +H + K FY+ ++ R + A+ + M+D D + N+ + GQL
Sbjct: 326 --FLFNQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF- 381
Query: 378 LLF 380
L+F
Sbjct: 382 LMF 384
Score = 41 (19.5 bits), Expect = 6.5e-66, Sum P(2) = 6.5e-66
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 603 PLVIADKGISRIKEHHM-KELLDGVRSFDDFLREGLIEYLDV 643
PL A K + ++ + +EL+ G + D FLR + + L +
Sbjct: 248 PLGFALKALVSFSDYQIFQELIKG-KEDDSFLRNSVSQMLRI 288
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 639 (230.0 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 151/384 (39%), Positives = 210/384 (54%)
Query: 675 VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+ +
Sbjct: 669 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYD 728
Query: 735 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANS 793
D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K+
Sbjct: 729 HYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQG 788
Query: 794 TSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
+ PG R MQ LD+DGL G ++ D Y G + TG+
Sbjct: 789 DDSLVFG---VKPGDPRVMQKLDNDGLPFIGAKLEFGDPYY---------GYLNLNTGEG 836
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
Y +++ + + C D S K +C+ +R R P +GDKF+SRHGQKG
Sbjct: 837 FVVYYKSKENCVVDNIKVCSNDTG---SGKFKCVCVT--VRVPRNPTIGDKFASRHGQKG 891
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
+ + ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F
Sbjct: 892 ILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
S +E E L G+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK
Sbjct: 952 F-SEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKF 1010
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
R +G R +T QP GR GG
Sbjct: 1011 QVRTTGARDKVTNQPIGGRNVQGG 1034
Score = 220 (82.5 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 113/465 (24%), Positives = 195/465 (41%)
Query: 25 VKSVVD-KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFL 80
+K + D + + PE K ++ L + H+DSFNY V G+ V+A D I L
Sbjct: 16 LKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISL 75
Query: 81 RFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKN 137
D I P++ + ++LN P CR TY + +I + V G K +++
Sbjct: 76 TIVDAAISPPAVPKGTICKELNIYPAECRGRRSTYRGKLTADISWAVNG--VPKGIIKQ- 132
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL--LIQEQLSKN 195
+G +PIM++S C LY L E + GGYFII G EKV+ LI + +
Sbjct: 133 --FLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 190
Query: 196 RVIIDTDKKGN---INAXXXXXXXXXXXXXXIQM-----EKGKMYLLLNQFVKK----IP 243
+I K + M E G + +LN +K +P
Sbjct: 191 IAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTV--MLNFIYRKELFFLP 248
Query: 244 IMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI----YTQEKALEYLEGKV 299
+ +KA+ SD ++ Q + + + S+ + + + +TQ++ L+YL G+
Sbjct: 249 LGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYL-GER 307
Query: 300 KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
R P A L F + +H + K FY+ ++ R + A+ + M+
Sbjct: 308 FRVKLSLPDWYPNAEAAEFL---FNQCICIHLKSNTDK-FYLLCLMTRKLFALARGECME 363
Query: 360 DK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVR 416
D D + N+ + GQL + ++ + + ++ +D K + S + + F +
Sbjct: 364 DNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMG 423
Query: 417 DSITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTLGH 459
+T E L+TGN K M G+ V +L+FI L H
Sbjct: 424 TELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSH 468
Score = 213 (80.0 bits), Expect = 7.5e-77, Sum P(2) = 7.5e-77
Identities = 89/360 (24%), Positives = 159/360 (44%)
Query: 233 LLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI--- 285
++LN +K +P+ +KA+ SD ++ Q + + + S+ + + +
Sbjct: 234 VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEG 293
Query: 286 -YTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
+TQ++ L+YL +VK S PN E F +F + +H + K FY+
Sbjct: 294 CHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEF-----LFNQCICIHLKSNTDK-FYLL 346
Query: 343 VMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
++ R + A+ + M+D D + N+ + GQL + ++ + + ++ +D K
Sbjct: 347 CLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQK 406
Query: 402 PSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTL 457
+ S + + F + +T E L+TGN K M G+ V +L+FI L
Sbjct: 407 TNVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYL 466
Query: 458 GHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
H V F K R + R L P WG LCP TP+G CGL+ +L + V T
Sbjct: 467 SHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFV 525
Query: 516 EGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPKCFADVMRKLR 571
I C LGV ++ + + V+ +G+++G K P+ AD +R+ +
Sbjct: 526 YTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLLDGVMVGWVDKELAPEV-ADTLRRFK 582
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 639 (230.0 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 151/384 (39%), Positives = 210/384 (54%)
Query: 675 VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+ +
Sbjct: 669 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYD 728
Query: 735 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANS 793
D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K+
Sbjct: 729 HYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQG 788
Query: 794 TSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
+ PG R MQ LD+DGL G ++ D Y G + TG+
Sbjct: 789 DDSLVFG---VKPGDPRVMQKLDNDGLPFIGAKLEFGDPYY---------GYLNLNTGEG 836
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
Y +++ + + C D S K +C+ +R R P +GDKF+SRHGQKG
Sbjct: 837 FVVYYKSKENCVVDNIKVCSNDTG---SGKFKCVCVT--VRVPRNPTIGDKFASRHGQKG 891
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
+ + ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+ G H + F
Sbjct: 892 ILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 951
Query: 973 EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
S +E E L G+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK
Sbjct: 952 F-SEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKF 1010
Query: 1033 HARGSGPRVMLTRQPTEGRARNGG 1056
R +G R +T QP GR GG
Sbjct: 1011 QVRTTGARDKVTNQPIGGRNVQGG 1034
Score = 220 (82.5 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 113/465 (24%), Positives = 195/465 (41%)
Query: 25 VKSVVD-KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFL 80
+K + D + + PE K ++ L + H+DSFNY V G+ V+A D I L
Sbjct: 16 LKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISL 75
Query: 81 RFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKN 137
D I P++ + ++LN P CR TY + +I + V G K +++
Sbjct: 76 TIVDAAISPPAVPKGTICKELNIYPAECRGRRSTYRGKLTADISWAVNG--VPKGIIKQ- 132
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL--LIQEQLSKN 195
+G +PIM++S C LY L E + GGYFII G EKV+ LI + +
Sbjct: 133 --FLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 190
Query: 196 RVIIDTDKKGN---INAXXXXXXXXXXXXXXIQM-----EKGKMYLLLNQFVKK----IP 243
+I K + M E G + +LN +K +P
Sbjct: 191 IAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTV--MLNFIYRKELFFLP 248
Query: 244 IMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI----YTQEKALEYLEGKV 299
+ +KA+ SD ++ Q + + + S+ + + + +TQ++ L+YL G+
Sbjct: 249 LGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYL-GER 307
Query: 300 KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
R P A L F + +H + K FY+ ++ R + A+ + M+
Sbjct: 308 FRVKLSLPDWYPNAEAAEFL---FNQCICIHLKSNTDK-FYLLCLMTRKLFALARGECME 363
Query: 360 DK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVR 416
D D + N+ + GQL + ++ + + ++ +D K + S + + F +
Sbjct: 364 DNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMG 423
Query: 417 DSITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTLGH 459
+T E L+TGN K M G+ V +L+FI L H
Sbjct: 424 TELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSH 468
Score = 213 (80.0 bits), Expect = 7.5e-77, Sum P(2) = 7.5e-77
Identities = 89/360 (24%), Positives = 159/360 (44%)
Query: 233 LLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI--- 285
++LN +K +P+ +KA+ SD ++ Q + + + S+ + + +
Sbjct: 234 VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEG 293
Query: 286 -YTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
+TQ++ L+YL +VK S PN E F +F + +H + K FY+
Sbjct: 294 CHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEF-----LFNQCICIHLKSNTDK-FYLL 346
Query: 343 VMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
++ R + A+ + M+D D + N+ + GQL + ++ + + ++ +D K
Sbjct: 347 CLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQK 406
Query: 402 PSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTL 457
+ S + + F + +T E L+TGN K M G+ V +L+FI L
Sbjct: 407 TNVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYL 466
Query: 458 GHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
H V F K R + R L P WG LCP TP+G CGL+ +L + V T
Sbjct: 467 SHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFV 525
Query: 516 EGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPKCFADVMRKLR 571
I C LGV ++ + + V+ +G+++G K P+ AD +R+ +
Sbjct: 526 YTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLLDGVMVGWVDKELAPEV-ADTLRRFK 582
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 670 (240.9 bits), Expect = 6.3e-77, Sum P(2) = 6.3e-77
Identities = 167/432 (38%), Positives = 229/432 (53%)
Query: 638 IEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
++Y+ E+ IA D +THIE P IL ++A + P+ +NQSPRN YQC
Sbjct: 670 LDYVGPFEQPFMEIACLPSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQ 729
Query: 697 MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
M KQ MG R D+ LY L Q P++ G D G NA VA++SY+G
Sbjct: 730 MSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTG 789
Query: 757 YDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTG--PGAE-RMQ 812
YD++DA+++NKSS +RGFG V K K ++++K + T + G PG+E R +
Sbjct: 790 YDMDDAMIINKSSHERGFGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAE 849
Query: 813 ---ILDDDGLAAPGEIIKPNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPD 867
LD+DG G IK + + T S ++ G T YK D
Sbjct: 850 WRATLDEDGFPHIGAEIKEGSIVAAYHTVRYDATSDSYINVDGITHF------VKYK--D 901
Query: 868 GETCVVDRVALCSDKNGD---LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 924
E +D + + + G I R R+P +GDKFSSRHGQKGVC + D P
Sbjct: 902 SERAYIDSIRIMGSETGTEPAQAISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMP 961
Query: 925 FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 984
FSE GI PDLI+NPH FPSRMT+ +MIE + GKAG G + F + T +
Sbjct: 962 FSESGIQPDLIINPHAFPSRMTIAQMIESMAGKAGALHGHPQDCTPFQFSEEYTAT-DYF 1020
Query: 985 SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1044
E L + G++Y G + +YSGITG A IF+G ++YQ+L+HMV DK R +GP LT
Sbjct: 1021 GEQLRRAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLT 1080
Query: 1045 RQPTEGRARNGG 1056
QP +GRA+ GG
Sbjct: 1081 GQPVKGRAKGGG 1092
Score = 182 (69.1 bits), Expect = 6.3e-77, Sum P(2) = 6.3e-77
Identities = 90/352 (25%), Positives = 149/352 (42%)
Query: 285 IYTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFL---ANVPVHNNNFRPKC 338
++++ + ++ K K G P PN+ G F LR V L N V K
Sbjct: 323 LHSRSECRAFIGEKFK-PVLGVPADTPNEEAGTEF--LRKVVLPHLGNQNVTETQDYDKF 379
Query: 339 FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398
+ M+R++ + A D+ D V N+ + L G L +L K + E ++ I
Sbjct: 380 KMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLL----KERLDEWVRSFGPI 435
Query: 399 L---SKPSRSSRFD--------LSQFIVRDSITVG--LERTLSTGNF-DVKRFKMHR-KG 443
L S + +RF +S+ I R + +G +E LSTGN + + G
Sbjct: 436 LRDWSNRNHGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLVSPTGLDLQQTSG 495
Query: 444 MTQVLARLSFIGTLGHMTRVSP-QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
T + +++F + H + F K + R L P WG LCP TP+G CGL+
Sbjct: 496 YTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLN 555
Query: 503 NLALMTHV-TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRR 559
+LA V T+D + L L LGV + +S +E S V +G I+G ++
Sbjct: 556 HLAHKCLVATSDTDVSHLPKLLVQLGVRNESSVSLDE-----SVTVQLDGRIIGYCSPKQ 610
Query: 560 PKCFADVMRKLRRAGK----IGEFVSVFVNE---KQRCVYIASDGGRVCRPL 604
+ A +R + +G +G + N + +Y+ S R+ RP+
Sbjct: 611 ARVIASTLRHWKVSGTNNVPLGLEIGYVPNSNGGQYPGIYMFSQAARMYRPV 662
Score = 155 (59.6 bits), Expect = 4.4e-74, Sum P(2) = 4.4e-74
Identities = 94/399 (23%), Positives = 166/399 (41%)
Query: 21 LAAPVKSVVDKFQLLPEFLKV--RGLVKQHLDSF-NYFVNTGIRKIVRANDRIVSGIDPS 77
LA +K VD F L E + GL +F + V T +K R + +
Sbjct: 36 LAESIKPHVDSFNALFEKGGIIEAGLKDIGTRTFLDEVVETAEQKQQRLAEGRRAPRRNK 95
Query: 78 IFLRFKDVRIGQPSMTVDGV----SEKLNPHMCRLSDMTYAAPILVNIEYV--QGSHTEK 131
+ +R K+V + +P++ + + + P CR TY + IEY G TE+
Sbjct: 96 LHVRIKEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNNGDWTEQ 155
Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL--LIQ 189
+G++PIMLR+ RC L AEL + E + GGYFI+ G EK++ LI
Sbjct: 156 VRE------LGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIV 209
Query: 190 EQLSKNRVIID---TDK-----KGNINAXXXXXXXXXXXXXXIQMEKGKMYLLL----NQ 237
+ + I+ T++ K I + G + N+
Sbjct: 210 GRRNYPMAIVRNTFTNRGHAYSKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNE 269
Query: 238 FVKKIPIMVVMKAMGMESDQEVVQ-MVGR---DPRYSALLLPSIEECANL----DIYTQE 289
++ IP+++++KA+ +D+E+ + +VG + + + +E ++++
Sbjct: 270 YI--IPVVMILKALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYKAYKLHSRS 327
Query: 290 KALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFL---ANVPVHNNNFRPKCFYVAV 343
+ ++ K K G P PN+ G F LR V L N V K +
Sbjct: 328 ECRAFIGEKFK-PVLGVPADTPNEEAGTEF--LRKVVLPHLGNQNVTETQDYDKFKMLMF 384
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
M+R++ + A D+ D V N+ + L G L +L ++
Sbjct: 385 MIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKE 423
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 680 (244.4 bits), Expect = 5.1e-75, Sum P(2) = 5.1e-75
Identities = 164/424 (38%), Positives = 231/424 (54%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN YQ
Sbjct: 666 GREELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 725
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 726 CQMGKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISY 785
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAERM-Q 812
+GYD+EDA+++NK+S +RGF V K ++ +++K D ++ R PG R+ Q
Sbjct: 786 TGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQG-DDSLVFGVR--PGDPRVAQ 842
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
LDDDGL G ++ D Y S L TG++ Y +++ + + C
Sbjct: 843 KLDDDGLPFVGAQLQYGDPYY---SYLNLN------TGESFVVYYKSKENCIVDNIKVCG 893
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
D + C+ +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 894 ND-----TGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVP 948
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L G
Sbjct: 949 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAG 1007
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
++Y G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP GR
Sbjct: 1008 YNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 1067
Query: 1053 RNGG 1056
GG
Sbjct: 1068 VQGG 1071
Score = 453 (164.5 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
Identities = 176/624 (28%), Positives = 282/624 (45%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + L S+ +
Sbjct: 266 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQML 323
Query: 282 NLDIY----TQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFLAN--VPVHNN 332
+ + TQ++ L YL G+ R P PN++ FL N + +H
Sbjct: 324 RIVMEEGCATQKQVLNYL-GERFRVKVNLPDWYPNEQAAE--------FLFNECICIHLK 374
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
+ K FY+ ++ R + A+ + M++ D + N+ + GQL + ++ + + +
Sbjct: 375 SNTEK-FYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSI 433
Query: 392 QKTVDIILSKPSRSSRFDLSQFIVRDSI--TVGLERTLSTGNFDVKRFK--MHRKGMTQV 447
+ +D K S S + I+ I T E L+TGN K + G+ V
Sbjct: 434 KIAIDKKAQKTSVSLNTENLMKILNLGIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVV 493
Query: 448 LARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 494 ADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLT 552
Query: 506 LMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPK 561
V T I C LGV ++ S + V+ +G+++G K P
Sbjct: 553 ATCEVVTQFVYTASIPALLCSLGVTPVD--SAPHRRYSECYPVLLDGVMVGWADKELAPS 610
Query: 562 CFADVMR--KLRRAGKIG---EFVSVFVNEKQRC---VYIASDGGRVCRPLVIADKGISR 613
AD +R K+ R +I E V + + K +Y+ + R+ RP + + G+ R
Sbjct: 611 -IADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRP--VQNLGLGR 667
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
+EL+ + F+ + E + L + TTH E+ P ++L
Sbjct: 668 ------EELIGTMEQI--FMNVAIFE-------DEVLAGV--------TTHQELFPHSLL 704
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 705 SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMY 764
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYAN 792
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K
Sbjct: 765 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQ 824
Query: 793 STSDRILRPDRTGPGAERMQILDD 816
D ++ R G ++ DD
Sbjct: 825 G-DDSLVFGVRPGDPRVAQKLDDD 847
Score = 151 (58.2 bits), Expect = 5.1e-75, Sum P(2) = 5.1e-75
Identities = 47/147 (31%), Positives = 69/147 (46%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V G+ V+A D I L D I P++ + ++LN
Sbjct: 74 LTRAHVESFNYAVREGLSHAVQAIPPFEFTFKDERISLTIVDAAISPPTVPKGSICKELN 133
Query: 103 --PHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
P CR TY + +I + V G K +++ +G +PIM++S C LY
Sbjct: 134 IYPAECRGRRSTYRGRLTADISWAVNG--ISKGVIKQ---FLGYVPIMVKSKLCNLYSLS 188
Query: 160 EAELARLGECPLDPGGYFIIKGTEKVL 186
L E + GGYFII G EKV+
Sbjct: 189 PRALIEHHEEAEEMGGYFIINGIEKVI 215
Score = 46 (21.3 bits), Expect = 5.9e-64, Sum P(2) = 5.9e-64
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 LKVRGLVKQHLDSFN---YFVNTGIRKIVR 65
L R L++ H ++ YF+ GI K++R
Sbjct: 187 LSPRALIEHHEEAEEMGGYFIINGIEKVIR 216
Score = 38 (18.4 bits), Expect = 4.1e-63, Sum P(2) = 4.1e-63
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 234 LLNQFVKKIPIMVVMKAMGMES 255
++ QF+ +PIMV K + S
Sbjct: 165 VIKQFLGYVPIMVKSKLCNLYS 186
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 368 (134.6 bits), Expect = 5.4e-71, Sum P(3) = 5.4e-71
Identities = 76/195 (38%), Positives = 109/195 (55%)
Query: 864 KGPDGETCVVDRVA-LCS-DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 921
K + E C+V+ + L S D + + +R R +GDKF+SR GQKG+C E
Sbjct: 832 KMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAE 891
Query: 922 DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 981
D PF+E G+ PD++ NPHGFPSRMT+ MIE + GK G + + F S +
Sbjct: 892 DLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPF-RFSEENTAI 950
Query: 982 ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1041
+ + L G++Y G + +YSG+ G + A IF G ++YQ+L+HMV DK R +G
Sbjct: 951 DYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVE 1010
Query: 1042 MLTRQPTEGRARNGG 1056
T QP +GR R GG
Sbjct: 1011 ARTHQPIKGRKRGGG 1025
Score = 287 (106.1 bits), Expect = 5.4e-71, Sum P(3) = 5.4e-71
Identities = 73/188 (38%), Positives = 104/188 (55%)
Query: 638 IEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
+EY+ E+ IA+ + PD TTH+E+ + +A LIP P +NQSPRN YQC
Sbjct: 629 VEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQ 688
Query: 697 MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
MGKQ MG N + + LY L P PL + + D G NA VAV+SY+G
Sbjct: 689 MGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTG 748
Query: 757 YDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAERMQILD 815
YD+EDA+++NK++ +RGF + K K+ +++K +S R P P E ++ LD
Sbjct: 749 YDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK--SSYFAR--HPHM--P--ELIKHLD 800
Query: 816 DDGLAAPG 823
DGL PG
Sbjct: 801 TDGLPHPG 808
Score = 208 (78.3 bits), Expect = 5.4e-71, Sum P(3) = 5.4e-71
Identities = 85/416 (20%), Positives = 182/416 (43%)
Query: 242 IPIMVVMKAMGMESDQEV----VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
+P+ +++K + +D+E+ VQ D Y + + + E N ++YT + ++ G
Sbjct: 246 VPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFI-G 304
Query: 298 KVKRSTFGSPPN---DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
+ R+ F P D + F ILR+ V +H + + K + M++++ +
Sbjct: 305 NLFRARFPEVPEWQPDDDVTDF-ILRE----RVMIHLDTYEDKFQLIVFMIQKLFQCAQG 359
Query: 355 KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
K +++ D + + L G L + ++ +S+V++ + L+ P +
Sbjct: 360 KYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQC 419
Query: 415 VRDSITVG--LERTLSTGNFDVKRFK--MHRKGMTQVLARLSFIGTLGHMTRVSP-QFEK 469
+R + VG +E L+TGN + M G+ + ++ + + H + +
Sbjct: 420 MRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFT 479
Query: 470 SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
+ + + R L P WG +CP TP+G CGL+ +L L ++ + P + +
Sbjct: 480 TMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPD--PKLVKAIPKHLI 537
Query: 530 DLEL--LSGEELHNPNSFLVIFNGLILGK-HR-RPKCFADVMRKLRRAGKIGEFVSV-FV 584
D+ + LS ++V +G LG H+ + D +R + G + + + + F+
Sbjct: 538 DMGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFI 597
Query: 585 NEKQRC----VYIASDGGRVCRPLVIAD----KGISRIKEHHMKELLDGVRSFDDF 632
K+ +YIA+ R+ RP+ + I +++ +M+ +D + DF
Sbjct: 598 PFKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDF 653
Score = 194 (73.4 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 88/429 (20%), Positives = 185/429 (43%)
Query: 31 KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVR--ANDRIVSGIDPSIFLRFKDVR 86
+F+ +P+ L + L H+DSF+ + G+ + + +S I ++ + +
Sbjct: 20 EFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIW 79
Query: 87 IGQPSMTVDGV---SEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIG 142
I +P + D + + ++ P R ++Y+ V + + V G +KT + + +G
Sbjct: 80 IAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNG--VQKTPINMD---LG 134
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT- 201
+PIMLRS C L E+ + GE + GG F+I+G EK++ + +N I
Sbjct: 135 EVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKR 194
Query: 202 ----DKKGNINAXXXXXXXXXXXXXXIQ-----MEKGKMYLLLNQFVKK---IPIMVVMK 249
D+ N + + + G + + VK+ +P+ +++K
Sbjct: 195 SSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSH-VKRLSYVPVCLILK 253
Query: 250 AMGMESDQEV----VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG 305
+ +D+E+ VQ D Y + + + E N ++YT + ++ G + R+ F
Sbjct: 254 CLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFI-GNLFRARFP 312
Query: 306 SPPNDREGRAFSILRDVFLAN-VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
P E + + D L V +H + + K + M++++ + K +++ D
Sbjct: 313 EVP---EWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSA 369
Query: 365 GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG-- 422
+ + L G L + ++ +S+V++ + L+ P + +R + VG
Sbjct: 370 MMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRA 429
Query: 423 LERTLSTGN 431
+E L+TGN
Sbjct: 430 IESFLATGN 438
Score = 38 (18.4 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 693 YQCAMGKQAMGNI 705
+QCA GK + N+
Sbjct: 354 FQCAQGKYKVENV 366
Score = 37 (18.1 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 599 RVCRPLVIADKGISR 613
RV RP I DK SR
Sbjct: 863 RVPRPATIGDKFASR 877
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 677 (243.4 bits), Expect = 9.3e-69, Sum P(2) = 9.3e-69
Identities = 223/795 (28%), Positives = 382/795 (48%)
Query: 80 LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV--------------- 124
++F +V + +P+ D + P RL +MTY+A I VN++
Sbjct: 95 VKFGEVTVEKPTFFSDDKELEFLPWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTG 154
Query: 125 QGSHTEKTTME--KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
Q ++ EK ++ K D++IG IP+M++S C K + E + G+C D GGYF+IKG
Sbjct: 155 QDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGK-ENCKKGDCAFDQGGYFVIKGA 213
Query: 183 EKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQMEKGKMY-----LLLNQ 237
EKV + QEQ+ R+ I ++ ++ + EK + Y +L
Sbjct: 214 EKVFIAQEQMCTKRLWI-SNSPWTVSFRSENKRNRFIVRLS-ENEKAEDYKRREKVLTVY 271
Query: 238 FVK-KIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC-ANLDIYT-QEKA 291
F+ +IP+ ++ A+G+ SD+E + ++ G D + L+ SI A + + A
Sbjct: 272 FLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNA 331
Query: 292 LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
L Y+E ++K + F PP A S+ + L P + + K ++ M++ ++ +
Sbjct: 332 LTYVEQQIKSTKF--PP------AESVDECLHLYLFP-GLQSLKKKARFLGYMVKCLLNS 382
Query: 352 MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
K +++D NKR+EL+G+L+ E + ++ ++ + + K S DL
Sbjct: 383 YAGKRKCENRDSFRNKRIELAGELL----EREIRVHLAHARRKMTRAMQK-HLSGDGDLK 437
Query: 412 ---QFIVRDSITVGLERTLSTGNFDVKRFKMHR-KGMTQVLARLSFIGTLGHMTRVSPQF 467
++ IT GL R STG + KM R G+ L R + + TL + R Q
Sbjct: 438 PIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQV 497
Query: 468 EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
+ KV R PS WG +C TP+GE CGLVKN++L+ V+T E + L C G
Sbjct: 498 LYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFAC-G 556
Query: 528 VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
+E+L + L + V+ NG +G + F ++ RR ++ + + ++
Sbjct: 557 MEELMDDTCTPLFGKHK--VLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKD 614
Query: 588 QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
V I +D GR+ RPL++ + + ++K+ + FD L G++E + + EE
Sbjct: 615 DNEVRIFTDAGRLLRPLLVVEN-LQKLKQEKPSQY-----PFDHLLDHGILELIGIEEEE 668
Query: 648 --NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG-KQAMG 703
N + + P TH E++ +LGV ++P+ +H+ R YQ +QA+G
Sbjct: 669 DCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIG 728
Query: 704 NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
+ N R D+L L YPQ+PL T E + + L GQNA VAV + GY+ ED+I
Sbjct: 729 FSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSI 788
Query: 764 VMNKSSLDRGFGRCIVVKKYTA-INQKYANSTS--DRILRPDRTGPGAERMQILDDDGLA 820
VMNK+SL+RG R ++ Y A ++ K + D +++ +T ++ L+DDG
Sbjct: 789 VMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFP 848
Query: 821 APGEIIKPNDVYINK 835
G + D+ I +
Sbjct: 849 FIGANMSTGDIVIGR 863
Score = 567 (204.7 bits), Expect = 4.2e-56, Sum P(2) = 4.2e-56
Identities = 160/440 (36%), Positives = 232/440 (52%)
Query: 629 FDDFLREGLIEYLDVNEEN--NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHH 685
FD L G++E + + EE N + + P TH E++ +LGV ++P+ +H
Sbjct: 650 FDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANH 709
Query: 686 NQSPRNTYQCAMG-KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
+ R YQ +QA+G + N R D+L L YPQ+PL T E + + L G
Sbjct: 710 DHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNG 769
Query: 745 QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
QNA VAV + GY+ ED+IVMNK+SL+RG R ++ Y A + A + R +
Sbjct: 770 QNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA--EVDAKDSEKRKKMDELV 827
Query: 805 GPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ-TDSRYRSARQTY 863
G +I D L G P +I + T G I+ G+ T+S A +
Sbjct: 828 QFGKTHSKIGKVDSLEDDGF---P---FIGAN--MST-GDIV--IGRCTES---GADHSI 873
Query: 864 KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 923
K E +V +V L S+ G +R R P LGDKFSS HGQKGV G + +Q++F
Sbjct: 874 KLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNF 933
Query: 924 PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS--AFGEPSGHADT- 980
PF+ +GI PD+++NPH FPSR T G+++E K G++C GS A+ + + HA
Sbjct: 934 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSK-GIACPIQKEGSSAAYTKLTRHATPF 992
Query: 981 ----VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1036
V I+E L + GFS G + +Y+G +G +++ IFMGP +YQ+L HM DK+ R
Sbjct: 993 STPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRN 1052
Query: 1037 SGPRVMLTRQPTEGRARNGG 1056
+GP LTRQP R R GG
Sbjct: 1053 TGPVHPLTRQPVADRKRFGG 1072
Score = 95 (38.5 bits), Expect = 9.3e-69, Sum P(2) = 9.3e-69
Identities = 29/114 (25%), Positives = 55/114 (48%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI-------------FLRFKD 84
F GL+ L+S+NYF+ G++ + ++ ++ ++PS ++F +
Sbjct: 42 FFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEML--VEPSFDVVKKKDNDWRYATVKFGE 99
Query: 85 VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
V + +P+ D + P RL +MTY+A I VN++ K T+ K+D
Sbjct: 100 VTVEKPTFFSDDKELEFLPWHARLQNMTYSARIKVNVQV----EVFKNTVVKSD 149
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 684 (245.8 bits), Expect = 8.5e-67, P = 8.5e-67
Identities = 165/424 (38%), Positives = 231/424 (54%)
Query: 636 GLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
G E + E+ +A++E + TTH E+ P ++L VIA IP+ HNQSPRN YQ
Sbjct: 418 GKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 477
Query: 695 CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
C MGKQ MG R D+ LY L PQ PL+ + D G NA VAV+SY
Sbjct: 478 CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 537
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQ 812
+GYD+EDA+++NK+S +RGF V K ++ +++K S + PG R +Q
Sbjct: 538 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFG---IKPGDPRVLQ 594
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
LDDDGL G ++ D Y S L TG++ Y +++ + + C
Sbjct: 595 KLDDDGLPFIGAKLQYGDPYY---SYLNLN------TGESFVMYYKSKENCVVDNIKVCS 645
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
D S K +CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ P
Sbjct: 646 NDTG---SGKFKCVCIT--MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 700
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
D++ NPHGFPSRMT+G +IE + GK+ G H + F S +E E L G
Sbjct: 701 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAG 759
Query: 993 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
+++ G + +YSGI+G L+A IF+G +YYQ+L+HMV DK R +G R +T QP GR
Sbjct: 760 YNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRN 819
Query: 1053 RNGG 1056
GG
Sbjct: 820 VQGG 823
Score = 446 (162.1 bits), Expect = 1.7e-38, P = 1.7e-38
Identities = 171/606 (28%), Positives = 276/606 (45%)
Query: 226 MEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
+E G + +LN +K +P+ +KA+ SD ++ Q + + + L S+ +
Sbjct: 18 LENGTV--MLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQML 75
Query: 282 NLDIY----TQEKALEYLEGKVKRSTFGSP---PNDREGRAFSILRDVFLAN--VPVHNN 332
+ + TQ++ L YL G+ R P PN++ FL N + +H
Sbjct: 76 RIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE--------FLFNQCICIHLK 126
Query: 333 NFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
+ K FY+ ++ R + A+ + M+D D + N+ + GQL + ++ + + +
Sbjct: 127 SNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSI 185
Query: 392 QKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK--MHRKGMTQV 447
+ D K S S D + F + +T E +TGN K + G+ V
Sbjct: 186 KIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVV 245
Query: 448 LARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+L+FI L H V F K R + R L P WG LCP TP+GE CGL+ +L
Sbjct: 246 ADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPVHTPDGEPCGLMNHLT 304
Query: 506 LMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPK 561
+ V T I C LGV ++ + V+ +G+++G K P
Sbjct: 305 AVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLLDGVMVGWVDKDLAPG 362
Query: 562 CFADVMR--KLRRAGKIG---EFVSVFVNEKQRC---VYIASDGGRVCRPLVIADKGISR 613
AD +R K+ R +I E V + + K +++ + R+ RP+ + ++
Sbjct: 363 -IADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV----QNLAL 417
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
KE EL+ + F+ + E +E ++ G TTH E+ P ++L
Sbjct: 418 GKE----ELIGTMEQI--FMNVAIFE-----DE------VFAGV----TTHQELFPHSLL 456
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L PQ PL+
Sbjct: 457 SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMY 516
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYAN 792
+ D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K ++ +++K
Sbjct: 517 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 576
Query: 793 STSDRI 798
S +
Sbjct: 577 GDSSLV 582
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 564 (203.6 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 183/609 (30%), Positives = 282/609 (46%)
Query: 242 IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC----ANLDIYTQEKALEYLEG 297
+P+ +KA+ +D ++ + + +D + + + E A YTQ+ LEYL G
Sbjct: 135 LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYL-G 193
Query: 298 KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
K R P +A +F + +H + R + FY+ M+ R + A +
Sbjct: 194 KSFRVKLNLPEWYSNEQAADF---IFNKCICIHLTD-RTEKFYLLCMMTRKLCAFAKGEC 249
Query: 358 MDDK-DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFI 414
M+D D + N+ + +GQL + ++ + + V+ ++ K + D + F
Sbjct: 250 MEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSLMKAFN 309
Query: 415 VRDSITVGLERTLSTGNFDVKRF--KMHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKS 470
+ +T E L+TGN K + G+ V +L+F+ L H + F +
Sbjct: 310 MTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQM 369
Query: 471 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD----EEEGPLISLCYCL 526
R + R L P WG LCP DTP+GE CGL+ ++ + + T+ + PL LC L
Sbjct: 370 RTTT-VRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPL--LC-AL 425
Query: 527 GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
GV ++ + V+ +G ++G V LRR K F +
Sbjct: 426 GVVPIDATPSRPY--AECYRVLLDGAVVGWVEWDLA-PQVAEALRRFKKQITQEKRFPSR 482
Query: 587 KQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
+ V I G P L I ++ +K LL G + + G +E + +N
Sbjct: 483 AE-VVLIPMTGKPSLYPGLFIFTTPCRMVRP--VKNLLYGRKEWI-----GTLEQVFMN- 533
Query: 646 ENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
+A E D P TTH E+ P +IL V+A LIP+ HNQSPRN YQC MGKQ MG
Sbjct: 534 -----VATMESDVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGF 588
Query: 705 IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
+N R D+ LYLL PQ PL+ R + G D G N+ VAV+SYSGYD+EDA++
Sbjct: 589 PVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMI 648
Query: 765 MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG-PGAERMQILDDDGLAAPG 823
+NKSS +RGF V+K + AN D ++ R G P + LD DGL G
Sbjct: 649 VNKSSWERGFAYGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEK--LDADGLPFVG 706
Query: 824 EIIKPNDVY 832
I++P D +
Sbjct: 707 SILQPGDPF 715
Score = 176 (67.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 80/340 (23%), Positives = 142/340 (41%)
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
+G +PIM++S C LY EL + E + GGYFII G EKV+ + +N +
Sbjct: 22 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 81
Query: 201 TDKK----G-NINAXXXXXXXXXXXXXXIQMEKGKMY---LLLNQFVKK----IPIMVVM 248
T K G I M + +++N +K +P+ +
Sbjct: 82 TRHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVMVNFIFQKELFFLPLGFAL 141
Query: 249 KAMGMESDQEVVQMVGRDPRYSALLLPSIEEC----ANLDIYTQEKALEYLEGKVKRSTF 304
KA+ +D ++ + + +D + + + E A YTQ+ LEYL GK R
Sbjct: 142 KALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYL-GKSFRVKL 200
Query: 305 GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DY 363
P +A +F + +H + R + FY+ M+ R + A + M+D D
Sbjct: 201 NLPEWYSNEQAADF---IFNKCICIHLTD-RTEKFYLLCMMTRKLCAFAKGECMEDNPDS 256
Query: 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITV 421
+ N+ + +GQL + ++ + + V+ ++ K + D + F + +T
Sbjct: 257 LMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSLMKAFNMTTDVTK 316
Query: 422 GLERTLSTGNFDVKRF--KMHRKGMTQVLARLSFIGTLGH 459
E L+TGN K + G+ V +L+F+ L H
Sbjct: 317 SFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSH 356
Score = 44 (20.5 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 826 IKPNDVYINKE---SPLETRGSIMSPTGQTDSRYRSAR--QTYKG--PDGETCVVDRVAL 878
I+P D + ++ L GSI+ P G Y + +T+ + E +VD + L
Sbjct: 686 IRPGDPNVKEKLDADGLPFVGSILQP-GDPFYSYMNLNTGETFTVYYQNKEVGIVDNIKL 744
Query: 879 CSDKNG 884
CS+ G
Sbjct: 745 CSNDRG 750
Score = 37 (18.1 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 54 YFVNTGIRKIVR 65
YF+ G+ K++R
Sbjct: 57 YFIINGLEKVIR 68
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 603 (217.3 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 225/821 (27%), Positives = 370/821 (45%)
Query: 277 IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
++E +L ++T+E+ ++L + G A ++LRD VH +N
Sbjct: 283 LDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRDYLF----VHLDNDHD 338
Query: 337 KCFYVAVMLRRMVEAMLNKDAM-DDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEV 391
K F + + + + + +++++ ++ D+ D + N+ + + G ++++ ++ + + S +
Sbjct: 339 K-FNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLL 397
Query: 392 QKTVDIILSKPSRSSRFDLSQFIVRD---SITVGLERTLSTGNFDVKRFK--MHRKGMTQ 446
+ +D SK S S D+ + I ++ SI +E L TG + R G T
Sbjct: 398 KDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTV 457
Query: 447 VLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
RL+F+ L V F R + R L P WG LCP TP+G CGL+ ++
Sbjct: 458 QAERLNFLRFLSFFRAVHRGASFAGLRTTT-VRKLLPESWGFLCPVHTPDGTPCGLLNHM 516
Query: 505 ALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL----------HNPNSFLVIFNGLIL 554
+ +T+ + I + +++L+G + P V+ +G ++
Sbjct: 517 TRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVV 576
Query: 555 GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD---KGI 611
G V+ +RR K+ E SV + E Y+ + G L +A + I
Sbjct: 577 GT-LSSNLVTKVVSYIRRL-KV-EAPSV-IPEDLEVGYVPTSMGGSYPGLYLASCPARFI 632
Query: 612 SRIKEHHM-KELLDGVRSFDDFLREGLIEYLDVNE--ENNALIALYEGDATPDTTHIEIE 668
+K + + ++ + F+ E I D NN+ +A TH EI
Sbjct: 633 RPVKNISIPSDNIELIGPFEQVFME--ISCPDGGNGGRNNSSLA----------THEEIH 680
Query: 669 PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
P ++ V+A L P+ HNQSPRN YQC M KQ M R D +Y L PQ P++
Sbjct: 681 PTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVV 740
Query: 729 TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF--GRCIVVKKYTAI 786
T+T D+ G NA VAV++++G+D+EDA+++NKSS++RG G+ +
Sbjct: 741 RTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLS 800
Query: 787 NQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVY--INKESPLETRGS 844
+Q + + R R+ AE +I D DGL + G+ + P++ Y I E +TR
Sbjct: 801 DQNSRFDSGSKSFR--RSTNKAEHFRI-DADGLPSVGQKLYPDEPYCSIYDEVTNKTRHM 857
Query: 845 IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 904
T + S K + R A +N + KF RH G K
Sbjct: 858 KRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHA----RNPIIGDKFSSRH------GQK- 906
Query: 905 SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
G + F G+ PDLI+NPH FPSRMT+ ++E + K G G+
Sbjct: 907 ----GVCSQLWPDIDMP-FN-GVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGK 960
Query: 965 FHYGSAF--------GEPSGHADT-VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1015
F + F GE + V+ + L + GF++ G + +YSG G L+ IF
Sbjct: 961 FVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIF 1020
Query: 1016 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
MGP+YYQ+L+HMV DK R +G LT QP +GR R GG
Sbjct: 1021 MGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGG 1061
Score = 159 (61.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 90/421 (21%), Positives = 183/421 (43%)
Query: 35 LPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP------SIFLRFKDVRIG 88
+ +F ++ LV H++SF+Y G+ ++ + VS DP SI+L V
Sbjct: 13 MEDFKELHNLVTHHIESFDYMTLKGL-DVMFNRIKPVSVYDPNTENELSIWLENPLVFAP 71
Query: 89 QP-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
Q S E L P CR + ++Y + ++ + +K D G+ PIM
Sbjct: 72 QKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGV--VVRDKFD--FGQFPIM 127
Query: 148 LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV---LLIQEQLSKNRVIIDT--D 202
L S C L G D +L + E + GGYFI+ G E+V ++ ++ +I ++ D
Sbjct: 128 LMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRD 187
Query: 203 KKGNINAXXXXXXXXXXXXXXIQMEKGKMYLLLNQFVKK----------IPIMVVMKAMG 252
+K ++ + + K+Y L N + +P+ +V+KA+
Sbjct: 188 RKEGYSSKAVVTRCVRDDQSSVTV---KLYYLRNGSARVGFWIVGREYLLPVGLVLKALT 244
Query: 253 MESDQEVVQMV--------GR-DPRYSALLLPS-----IEECANLDIYTQEKALEYLEGK 298
D+E+ + + GR D L+ ++E +L ++T+E+ ++L
Sbjct: 245 NSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQH 304
Query: 299 VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
+ G A ++LRD VH +N K F + + + + + +++++ ++
Sbjct: 305 FQPVLDGVKKESLSIVAEAVLRDYLF----VHLDNDHDK-FNLLIFIIQKLYSLVDQTSL 359
Query: 359 -DDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSRFDLSQF 413
D+ D + N+ + + G ++++ ++ + + S ++ +D SK S S D+ +
Sbjct: 360 PDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKL 419
Query: 414 I 414
I
Sbjct: 420 I 420
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 545 (196.9 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 110/219 (50%), Positives = 147/219 (67%)
Query: 697 MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
MGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSG
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 757 YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP--DR-TGPGAERMQI 813
YDIEDA+V+NK+SLDRGFGRC+V K ++Y N T D+++ P D T R +I
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 814 LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 873
LD DG+ +PGE ++ V +NK P T+ + +Y+ TYKG +
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDS--YI 178
Query: 874 DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 179 EKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 388 (141.6 bits), Expect = 6.1e-46, Sum P(4) = 6.1e-46
Identities = 103/330 (31%), Positives = 168/330 (50%)
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
+ +L G+N VA M + GY+ EDAI++++ + I +++Y + + +
Sbjct: 677 HGELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYEC-DARDTKLGPEE 735
Query: 798 ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQT--DS 854
I R D G + ++ LD+ G+ G ++P D+ + K +P ET + +
Sbjct: 736 ITR-DIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGE 794
Query: 855 RYRSARQT-YKGPDGETCVVDRVALCSDKNGD-------LCIKFLIRHTRRPELGDKFSS 906
+ R R T + P GE+ V V + S +NGD + ++ I R+ +GDK +
Sbjct: 795 KAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGDKMAG 854
Query: 907 RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 966
RHG KGV I+ +ED PF G ++++NP G PSRM +G+++E G A + G
Sbjct: 855 RHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKALG--- 911
Query: 967 YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1026
P + T E I E L K G +GK + G TG P + + +G +Y KL H
Sbjct: 912 --INVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAH 969
Query: 1027 MVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
+V DK+HAR +GP ++T+QP G+A+ GG
Sbjct: 970 LVDDKIHARSTGPYSLVTQQPLGGKAQFGG 999
Score = 120 (47.3 bits), Expect = 6.1e-46, Sum P(4) = 6.1e-46
Identities = 36/152 (23%), Positives = 70/152 (46%)
Query: 26 KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDV 85
K + + PE L++ L++ S+ +F++ G+R++ R I ++ L F D
Sbjct: 8 KKIRYSYAKFPEILELPYLIEIQKKSYQWFLDEGLREVFREISPITD-FTGNLSLEFLDY 66
Query: 86 RIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
+G+P +V+ C+ D TY+AP+ V + + + E +++ +V +G P
Sbjct: 67 YLGKPKYSVEE---------CKERDFTYSAPLRVKVRLL---NKETGEIKEQEVFLGDFP 114
Query: 146 IMLRSCRCVLYGKDEAELARLGECPLDPGGYF 177
+M + G AE + + PG YF
Sbjct: 115 LMTEKGTFIFNG---AERVVISQMVRSPGVYF 143
Score = 107 (42.7 bits), Expect = 6.1e-46, Sum P(4) = 6.1e-46
Identities = 40/168 (23%), Positives = 77/168 (45%)
Query: 345 LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
+R ++ M + +DD D++GN+RL G+L+ ++ F+ ++ +++ V ++
Sbjct: 320 IRYLLGLMRGQGKVDDIDHLGNRRLRSVGELL----QNQFRIGLARMERVVRERMTIQDA 375
Query: 405 SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMTR 462
S Q ++ V + G+ + +F + ++ RLS +G G ++R
Sbjct: 376 DSL--TPQVLINTRPIVAAIKEFF-GSSQLSQFMDQTNPLAELTHKRRLSALGP-GGLSR 431
Query: 463 VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
FE R + S +G +CP +TPEG GL+ NL V
Sbjct: 432 ERAGFEV-------RDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARV 472
Score = 79 (32.9 bits), Expect = 1.1e-41, Sum P(4) = 1.1e-41
Identities = 36/145 (24%), Positives = 62/145 (42%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIID-TDKKGNINAXXXXXXXXXXXXXX 223
LG+ PL G FI G E+V++ Q S + D G
Sbjct: 110 LGDFPLMTEKGTFIFNGAERVVISQMVRSPGVYFSEQVDPNGKKMYLATIIPNRGAWLEF 169
Query: 224 IQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANL 283
+Y+ +++ +K+P+ V++KA+G ES + ++ D + A L E N
Sbjct: 170 ETDVNDHIYVRIDR-TRKLPVTVLLKALGYESKGRIAELFDHDDKIIATL-----ERDNT 223
Query: 284 DIYTQEKALEYLEGKVKRSTFGSPP 308
D ++E+AL + K++ G PP
Sbjct: 224 D--SREEALIEIYKKLRP---GEPP 243
Score = 52 (23.4 bits), Expect = 6.1e-46, Sum P(4) = 6.1e-46
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 665 IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
+++ P + V LIP+ H+ + R M +QA+
Sbjct: 546 VDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAV 583
Score = 41 (19.5 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG----YDKLGAGQN 746
T Q GK G F ++ Y Y + +LT ++ ++VG Y+ + G+N
Sbjct: 987 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGEN 1045
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 358 (131.1 bits), Expect = 5.1e-41, Sum P(5) = 5.1e-41
Identities = 103/334 (30%), Positives = 167/334 (50%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN-QKYANSTSDRI 798
+L G+N V M++ GY+ EDAI+M++ R + YT+I+ ++Y + D
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSE--------RLVKDDVYTSIHIEEYESEARDTK 802
Query: 799 LRPD---RTGP--GAERMQILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMSPTG 850
L P+ R P G + ++ LD+ G+ G +K D+ + K +P E
Sbjct: 803 LGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHA 862
Query: 851 QTDSRYRSARQT-YKGPDGETCVVDRVALCSDKNGDLC---IKFLIR----HTRRPELGD 902
+ R R T + P G ++ V + + ++GD + L+R R+ GD
Sbjct: 863 IFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGD 922
Query: 903 KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 962
K + RHG KGV I+ +ED P+ G D+++NP G PSRM +G+++EL G A
Sbjct: 923 KMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYL 982
Query: 963 GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1022
G H + + + D +I E G + + K ++Y G TG P + +G +Y
Sbjct: 983 G-IHIATPVFDGAREEDVWGTIEEA----GMANDAKTILYDGRTGEPFDNRVSVGVMYMI 1037
Query: 1023 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
KL HMV DK+HAR +GP ++T+QP G+A+ GG
Sbjct: 1038 KLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGG 1071
Score = 121 (47.7 bits), Expect = 5.1e-41, Sum P(5) = 5.1e-41
Identities = 33/136 (24%), Positives = 68/136 (50%)
Query: 35 LPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTV 94
+ E L++ L++ S+ +F++ G+R++ + I ++ L F D +G+P +V
Sbjct: 20 ISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPI-EDFTGNLSLEFIDYSLGEPKYSV 78
Query: 95 DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
D C+ D+TYAAP+ V + + + E +++ DV +G P+M + V
Sbjct: 79 DE---------CKERDVTYAAPLRVKVRLI---NKETGEVKEQDVFMGDFPLMTETGTFV 126
Query: 155 LYGKDEAELARLGECP 170
+ G + +++L P
Sbjct: 127 INGAERVIVSQLVRSP 142
Score = 106 (42.4 bits), Expect = 1.6e-39, Sum P(5) = 1.6e-39
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIID-TDKKGNINAXXXXXXXXXXXXXX 223
+G+ PL G F+I G E+V++ Q S + DK G
Sbjct: 113 MGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEY 172
Query: 224 IQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANL 283
K +Y+ +++ +K+P+ V+++A+G SDQE+ +++G D Y L + E N
Sbjct: 173 ETDAKDVVYVRIDR-TRKLPVTVLLRALGFGSDQEITELLG-DNEY----LSNTLEKDNT 226
Query: 284 DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
D + EKAL LE +R G PP ++ + R
Sbjct: 227 D--STEKAL--LE-IYERLRPGEPPTVENAKSLLVSR 258
Score = 104 (41.7 bits), Expect = 5.1e-41, Sum P(5) = 5.1e-41
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 359 DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
DD D++GN+RL G+L+ ++ F+ +S +++ V +S ++ + +R
Sbjct: 398 DDIDHLGNRRLRSVGELL----QNQFRIGLSRMERVVRERMSIQDTNAITPQALINIRPV 453
Query: 419 ITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
I E G+ + +F + ++ RLS +G G +TR FE
Sbjct: 454 IAAIKE---FFGSSQLSQFMDQTNPLAELTHKRRLSALGP-GGLTRERAGFEV------- 502
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
R + S +G +CP +TPEG GL+ +L+ V
Sbjct: 503 RDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKV 536
Score = 57 (25.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 32/139 (23%), Positives = 58/139 (41%)
Query: 617 HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG-DATPDTTHIEIEPFTILGV 675
H + DG R D + G IE + N+A LY+G P + + ++
Sbjct: 985 HIATPVFDGAREEDVW---GTIE--EAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIK- 1038
Query: 676 IAGLIPYPHHNQS--PRN--TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
+A ++ H +S P + T Q GK G F ++ Y Y + +LT +
Sbjct: 1039 LAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVK 1098
Query: 732 TIELVG----YDKLGAGQN 746
+ +++G Y+ + G+N
Sbjct: 1099 SDDVIGRVKTYEAIVKGEN 1117
Score = 42 (19.8 bits), Expect = 5.1e-41, Sum P(5) = 5.1e-41
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 636 GLIEYLDVNEENNALIA 652
G ++YL +EE+N ++A
Sbjct: 558 GHVDYLTADEEDNYVVA 574
Score = 40 (19.1 bits), Expect = 5.1e-41, Sum P(5) = 5.1e-41
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ P ++ IP+ ++ S R M +QA+
Sbjct: 609 YMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAV 647
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 251 (93.4 bits), Expect = 9.9e-41, Sum P(5) = 9.9e-41
Identities = 71/231 (30%), Positives = 113/231 (48%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L GQN VA MS+ G++ EDAI++++ + I + K+ + + I
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHE-LEAHDTKLGGEEIT 779
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQT--DSRY 856
R D G E ++ LD+DG+ G + P+D+ + K +P ET S + +
Sbjct: 780 R-DIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKA 838
Query: 857 RSARQT-YKGPDGETCVVDRVALCSDKNGD-------LCIKFLIRHTRRPELGDKFSSRH 908
R + T + P GE V V + S +NGD ++ + R+ +GDK + RH
Sbjct: 839 REVKDTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRH 898
Query: 909 GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959
G KGV I ED P+ G D+++NP G PSRM +G+++E G AG
Sbjct: 899 GNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAG 949
Score = 137 (53.3 bits), Expect = 9.9e-41, Sum P(5) = 9.9e-41
Identities = 80/367 (21%), Positives = 160/367 (43%)
Query: 167 GECPLDPG-GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQ 225
G+ PL G FI GTE+V++ Q S +D ++
Sbjct: 118 GDIPLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPAT-GRPLCHTNLIPSRGAWLE 176
Query: 226 MEKGKMYLLLNQFV--KKIPIMVVMKAMGMESDQEVV---QMVGRDPR--YSALLL---P 275
E ++ + +KIP+ +++A+G D +++ +++ DP Y + P
Sbjct: 177 FETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDP 236
Query: 276 SIEE--CANLDIYTQEKALEYLEG----KVKRSTFGSPPNDREGRA--FSILRDVFLANV 327
I++ A +DIY++ + + K+ F P + G+ + + R + L +
Sbjct: 237 LIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPDR 296
Query: 328 PVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTM 387
V +N + VA+ ++R++ +D DD D++GN+R+ G+LV ++ F+
Sbjct: 297 EVGDNRALTREDIVAI-IKRIIMVNNGQDTPDDIDHLGNRRIRTVGELV----QNQFRIG 351
Query: 388 ISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQV 447
+ +++ R S +L +V S V + +S VK F ++Q
Sbjct: 352 LVRLERVAR------ERMSIVNLE--VVTPSALVNIRPVVSA----VKEF-FGGSQLSQF 398
Query: 448 LARLSFIGTLGHMTRVSPQFEK--SRKVSG--PRALQPSQWGMLCPCDTPEGEACGLVKN 503
+ + + + + + R+S SR+ +G R + S +G +CP +TPEG GL+ +
Sbjct: 399 MDQTNPLAEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGS 458
Query: 504 LALMTHV 510
LA + +
Sbjct: 459 LATYSRI 465
Score = 121 (47.7 bits), Expect = 9.9e-41, Sum P(5) = 9.9e-41
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 997 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
GK ++ G TG + +G +Y KL H+V DK+HAR +GP ++++QP G+A+ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Score = 107 (42.7 bits), Expect = 9.9e-41, Sum P(5) = 9.9e-41
Identities = 36/145 (24%), Positives = 61/145 (42%)
Query: 35 LPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTV 94
LPE + V L++ L SF +F G+R+++ I + + L F +P
Sbjct: 22 LPEVVNVPNLIEMQLQSFVWFQEEGLRELIEEISPIKDFVGNRLELEFIGYEFREP---- 77
Query: 95 DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
+L+ + C D TY+ P+ V + + E E D+ G IP+M +
Sbjct: 78 -----RLSEYECTQRDQTYSVPLYVKARLIVKTTGE--IKEPFDLFFGDIPLMTALGTFI 130
Query: 155 LYGKDEAELARLGECPLDPGGYFII 179
G + +++L PG YF I
Sbjct: 131 TSGTERVVVSQLLR---SPGVYFTI 152
Score = 57 (25.1 bits), Expect = 9.9e-41, Sum P(5) = 9.9e-41
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ P I V A LIP+ H+ + R M +QA+
Sbjct: 587 YMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQAV 625
Score = 37 (18.1 bits), Expect = 4.9e-24, Sum P(4) = 4.9e-24
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 251 MGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
+G + E + R+PR S ++ ++ +Y + + + G++K
Sbjct: 61 VGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIK 110
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 162 (62.1 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K + RR + GDK + RHG KGV TIV ED P+ E G D+++NP G PSRM +
Sbjct: 1085 VKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNI 1144
Query: 948 GKMIELLGGKAGVSCGR 964
G+++E G A G+
Sbjct: 1145 GQVLETHLGWAAKGLGK 1161
Score = 135 (52.6 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 968 GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1027
G P T E I + L +G+ +Y G TG + +G +Y KL H+
Sbjct: 1212 GVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHL 1271
Query: 1028 VLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
V DKMHAR +G ++T+QP G+A+ GG
Sbjct: 1272 VDDKMHARSTGSYSLVTQQPLGGKAQFGG 1300
Score = 115 (45.5 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
+LR +V+ K +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 449 VLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVK------D 498
Query: 404 RSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
R S D+ + +D + + + G+ + +F ++++ R+S +G G
Sbjct: 499 RLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP-G 557
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
+TR FE R + + +G +CP +TPEG GL+ +LA+
Sbjct: 558 GLTRERAGFEV-------RDVHVTHYGRVCPIETPEGPNIGLINSLAV 598
Score = 100 (40.3 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 23/99 (23%), Positives = 49/99 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L GQN VA M ++GY+ ED+I++++ ++ I ++++T + + + +
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGPEE--I 872
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
D G + LD+ G+ G + D+ + K +P
Sbjct: 873 TSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTP 911
Score = 91 (37.1 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 34/144 (23%), Positives = 65/144 (45%)
Query: 37 EFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF--LRFKDVRIGQ-PSMT 93
E LK L++ ++S+ F+ I R ++ + + S+F + + + +
Sbjct: 32 EILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFK-SVFPITSYSGYAVLEYVGYS 90
Query: 94 VDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-------QGSHTEKTTMEKNDVVIGRIPI 146
+ G S + C+L +TYAAP+ VN+ V G K E+ +V +G IP+
Sbjct: 91 LGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAGKKAIKDIKEQ-EVYMGEIPL 149
Query: 147 MLRSCRCVLYGKDEAELARLGECP 170
M + V+ G + +++L P
Sbjct: 150 MTETGSLVINGTERVVVSQLHRSP 173
Score = 70 (29.7 bits), Expect = 1.4e-35, Sum P(6) = 1.4e-35
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 654 YEGD---ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
Y+G+ TPD ++++ P I+ V A LIP+ H+ + R M +QA+ I
Sbjct: 659 YKGEFTLTTPDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTI 714
Score = 63 (27.2 bits), Expect = 9.7e-33, Sum P(6) = 9.7e-33
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+GE PL G +I GTE+V++ Q S V + DK G ++
Sbjct: 144 MGEIPLMTETGSLVINGTERVVVSQLHRSPG-VFFEHDK-GKTHSSGKLLYSARVIPYRG 201
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
+ E K +++ +++ +K+P V+++A+G +++Q
Sbjct: 202 SWLDFEFDPKDCLFVRIDRR-RKLPATVILRALGYDTEQ 239
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 218 (81.8 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 65/227 (28%), Positives = 113/227 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
++ G+N VA+M + G++ EDAI+++ ++ I ++++ I+ + ++ I
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHE-IDARDTKLGAEEIT 770
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQT-----D 853
R D E + LD+ G+ G ++ D+ + K +P ET ++P +
Sbjct: 771 R-DIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETE---LTPEERLLRAIFG 826
Query: 854 SRYRSARQT-YKGPDGETCVVDRVALCSDKNGDLC---IKFLIR----HTRRPELGDKFS 905
+ R R T K P GE+ V + + S ++ D + L+R R+ GDK +
Sbjct: 827 EKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLA 886
Query: 906 SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 952
RHG KGV G I+ ED PF G D+I+N HG P RM +G+++E
Sbjct: 887 GRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILE 933
Score = 140 (54.3 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 996 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1055
+GK M++ G +G P + +G +Y KL H+V DK+HAR +GP M+T+QP G+A+ G
Sbjct: 1005 DGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFG 1064
Query: 1056 G 1056
G
Sbjct: 1065 G 1065
Score = 107 (42.7 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 47/189 (24%), Positives = 85/189 (44%)
Query: 32 FQLLPEFLKVRGLVKQHLDSFNYFVNTGI-RKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
F L E L+V GL+ DSF + + + R+ R + V G++ ++ +
Sbjct: 41 FAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLY-ELSPIEDF 99
Query: 89 QPSMTVDGVSEKLN----P-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
SM++ + + P C+ DMTYAAP+ V E++ + E ++ V +G
Sbjct: 100 SGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGE---IKSQTVFMGD 156
Query: 144 IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYF---IIKGTEKVLLIQEQL-SKNRVI- 198
P+M ++ G + +++L PG YF I K T+K L + + S+ +
Sbjct: 157 FPMMTEKGTFIINGTERVVVSQLVR---SPGVYFDETIDKSTDKTLHSVKVIPSRGAWLE 213
Query: 199 IDTDKKGNI 207
D DK+ +
Sbjct: 214 FDVDKRDTV 222
Score = 97 (39.2 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 359 DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
DD D+ GN+RL G+L+ ++ + +S +++ V R + D+ +
Sbjct: 368 DDIDHFGNRRLRTVGELI----QNQIRVGMSRMERVVR------ERMTTQDVEAITPQTL 417
Query: 419 ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK--SRKVSG- 475
I + R + +K F ++Q + + + + L H R+S SR+ +G
Sbjct: 418 INI---RPVVAA---IKEF-FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGL 470
Query: 476 -PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
R + PS +G +CP +TPEG GL+ +L++ V
Sbjct: 471 EVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 506
Score = 78 (32.5 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 39/169 (23%), Positives = 79/169 (46%)
Query: 157 GKDEAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDT-DKKGNINAXXXXX 214
G+ +++ +G+ P+ G FII GTE+V++ Q S +T DK +
Sbjct: 145 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKV 204
Query: 215 XXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLL 274
++K + ++ P+ V++KA+G S+Q +V+ G +S ++
Sbjct: 205 IPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQ-IVERFG----FSEIMR 259
Query: 275 PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
++E+ + + T E L+ K++ G PP +E A ++L ++F
Sbjct: 260 STLEK--DNTVGTDEALLDIYR-KLRP---GEPPT-KES-AQTLLENLF 300
Score = 50 (22.7 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 661 DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
+ ++++ P ++ V +IP+ H+ + R M +QA+
Sbjct: 575 EVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Score = 43 (20.2 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG----YDKLGAGQN 746
T Q GK G F ++ Y Y + LLT ++ + VG Y+ + G+N
Sbjct: 1053 TQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGEN 1111
Score = 42 (19.8 bits), Expect = 6.7e-28, Sum P(5) = 6.7e-28
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 80 LRFKDVRIGQPSMTVDGVSEKLNPHMCR-LSDMTYAAP-ILVNIEYVQGSHTEKTTM 134
L FK+ R + V++KL H+ ++ T ++ IEY+ H +TTM
Sbjct: 299 LFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTM 355
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 337 (123.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 96/337 (28%), Positives = 167/337 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA M + GY+ EDA+++++ + ++KY + ++++I
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 800 RPDRTGPGAER--MQILDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDSRY 856
+ P E ++ LD +G+ G ++ D+ + K +P + + S ++ G + +
Sbjct: 716 KEI---PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIF 772
Query: 857 ----RSARQT-YKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910
++++T K P G V+D + D D+ ++ I R ++GDK + RHG
Sbjct: 773 GLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPL-DIMVRVYILQKREIKVGDKVAGRHGN 831
Query: 911 KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970
KG+ I+ ++D P+ + G D++ NP G PSRM VG++ E G AG + HY A
Sbjct: 832 KGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKK-HYRIA 890
Query: 971 -FGEPSGH--------ADTVESISETLVKHGFS--YNGKDMIYSGITGCPLQAYIFMGPI 1019
F E ++ E+ +T F Y GK I+ G TG P + + +G
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
Y KL H V +K+H R +GP ++T+QP GRA+ GG
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Score = 118 (46.6 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 92/394 (23%), Positives = 166/394 (42%)
Query: 154 VLYGKD-EAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVI-IDTDKKGNINAX 210
+++G D + + +G P+ + G FII G ++++ Q LS + D KG I+
Sbjct: 86 LIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYYRSELDHKG-ISIY 144
Query: 211 XXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY- 269
+ ++K + +KI I+V+ AMG +E++ V +
Sbjct: 145 TGTIISDWGGRSELAIDKKERIWARVSRKQKISILVLSSAMGSNL-KEILDNVSYPEIFL 203
Query: 270 ---SALLLPSIE--ECANLDIYTQEKAL-------EYLEGKVKRSTFGSPPN-DREGRAF 316
+A IE E A L+ Y Q + E L ++++ F R GR
Sbjct: 204 SFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSESLCEELQKKFFQQKCELGRIGRR- 262
Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAV--MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
++ R + L ++P ++ P+ A ++ E + D DD +++ NKR+
Sbjct: 263 NMNRRLNL-DIPQNSTFLLPRDVLAATDHLIGMKFETGILDD--DDMNHLKNKRIRSVAD 319
Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST--GNF 432
L+ F + VQKT+ + + S+ + L + S ++ L T T G +
Sbjct: 320 LLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTL---VTPTSTSILLITTYETFFGTY 376
Query: 433 DVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
+ + +TQ + ++S +G G +T + F +SR + PS +G +CP
Sbjct: 377 PLSQVFDQTNPLTQTVHGRKVSCLGP-GGLTGRTASF-RSRDI------HPSHYGRICPI 428
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
DT EG GL +LA+ H D G + S Y
Sbjct: 429 DTSEGINVGLTGSLAI--HARIDHWWGSVESPFY 460
Score = 54 (24.1 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 664 HIE-IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
H+ I PF + LIP+ HN + R M +QA+
Sbjct: 522 HVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRF-KDVRIGQPSMTV-DGVS 98
+ G + + F F+N G+ + + I F F K ++ +PS+ D V
Sbjct: 12 IPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLLEPSIKERDAVY 71
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
E L TY++ + V+ + G +K T+ IG IPIM
Sbjct: 72 ESL----------TYSSELYVSARLIFGFDVQKQTIS-----IGNIPIM 105
Score = 40 (19.1 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 599 RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR-EGLIEYLDVNEENNALIALYE 655
RV R I+ +S ++KE+LD V + FL E + + A++ Y+
Sbjct: 169 RVSRKQKISILVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQ 226
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 337 (123.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 96/337 (28%), Positives = 167/337 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA M + GY+ EDA+++++ + ++KY + ++++I
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 800 RPDRTGPGAER--MQILDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDSRY 856
+ P E ++ LD +G+ G ++ D+ + K +P + + S ++ G + +
Sbjct: 716 KEI---PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIF 772
Query: 857 ----RSARQT-YKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910
++++T K P G V+D + D D+ ++ I R ++GDK + RHG
Sbjct: 773 GLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPL-DIMVRVYILQKREIKVGDKVAGRHGN 831
Query: 911 KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970
KG+ I+ ++D P+ + G D++ NP G PSRM VG++ E G AG + HY A
Sbjct: 832 KGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKK-HYRIA 890
Query: 971 -FGEPSGH--------ADTVESISETLVKHGFS--YNGKDMIYSGITGCPLQAYIFMGPI 1019
F E ++ E+ +T F Y GK I+ G TG P + + +G
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
Y KL H V +K+H R +GP ++T+QP GRA+ GG
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Score = 118 (46.6 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 92/394 (23%), Positives = 166/394 (42%)
Query: 154 VLYGKD-EAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVI-IDTDKKGNINAX 210
+++G D + + +G P+ + G FII G ++++ Q LS + D KG I+
Sbjct: 86 LIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYYRSELDHKG-ISIY 144
Query: 211 XXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY- 269
+ ++K + +KI I+V+ AMG +E++ V +
Sbjct: 145 TGTIISDWGGRSELAIDKKERIWARVSRKQKISILVLSSAMGSNL-KEILDNVSYPEIFL 203
Query: 270 ---SALLLPSIE--ECANLDIYTQEKAL-------EYLEGKVKRSTFGSPPN-DREGRAF 316
+A IE E A L+ Y Q + E L ++++ F R GR
Sbjct: 204 SFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSESLCEELQKKFFQQKCELGRIGRR- 262
Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAV--MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
++ R + L ++P ++ P+ A ++ E + D DD +++ NKR+
Sbjct: 263 NMNRRLNL-DIPQNSTFLLPRDVLAATDHLIGMKFETGILDD--DDMNHLKNKRIRSVAD 319
Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST--GNF 432
L+ F + VQKT+ + + S+ + L + S ++ L T T G +
Sbjct: 320 LLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTL---VTPTSTSILLITTYETFFGTY 376
Query: 433 DVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
+ + +TQ + ++S +G G +T + F +SR + PS +G +CP
Sbjct: 377 PLSQVFDQTNPLTQTVHGRKVSCLGP-GGLTGRTASF-RSRDI------HPSHYGRICPI 428
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
DT EG GL +LA+ H D G + S Y
Sbjct: 429 DTSEGINVGLTGSLAI--HARIDHWWGSVESPFY 460
Score = 54 (24.1 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 664 HIE-IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
H+ I PF + LIP+ HN + R M +QA+
Sbjct: 522 HVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRF-KDVRIGQPSMTV-DGVS 98
+ G + + F F+N G+ + + I F F K ++ +PS+ D V
Sbjct: 12 IPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLLEPSIKERDAVY 71
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
E L TY++ + V+ + G +K T+ IG IPIM
Sbjct: 72 ESL----------TYSSELYVSARLIFGFDVQKQTIS-----IGNIPIM 105
Score = 40 (19.1 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 599 RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR-EGLIEYLDVNEENNALIALYE 655
RV R I+ +S ++KE+LD V + FL E + + A++ Y+
Sbjct: 169 RVSRKQKISILVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQ 226
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 337 (123.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 96/337 (28%), Positives = 167/337 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA M + GY+ EDA+++++ + ++KY + ++++I
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 800 RPDRTGPGAER--MQILDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDSRY 856
+ P E ++ LD +G+ G ++ D+ + K +P + + S ++ G + +
Sbjct: 716 KEI---PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIF 772
Query: 857 ----RSARQT-YKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910
++++T K P G V+D + D D+ ++ I R ++GDK + RHG
Sbjct: 773 GLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPL-DIMVRVYILQKREIKVGDKVAGRHGN 831
Query: 911 KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970
KG+ I+ ++D P+ + G D++ NP G PSRM VG++ E G AG + HY A
Sbjct: 832 KGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKK-HYRIA 890
Query: 971 -FGEPSGH--------ADTVESISETLVKHGFS--YNGKDMIYSGITGCPLQAYIFMGPI 1019
F E ++ E+ +T F Y GK I+ G TG P + + +G
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
Y KL H V +K+H R +GP ++T+QP GRA+ GG
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Score = 118 (46.6 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 92/394 (23%), Positives = 166/394 (42%)
Query: 154 VLYGKD-EAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVI-IDTDKKGNINAX 210
+++G D + + +G P+ + G FII G ++++ Q LS + D KG I+
Sbjct: 86 LIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYYRSELDHKG-ISIY 144
Query: 211 XXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY- 269
+ ++K + +KI I+V+ AMG +E++ V +
Sbjct: 145 TGTIISDWGGRSELAIDKKERIWARVSRKQKISILVLSSAMGSNL-KEILDNVSYPEIFL 203
Query: 270 ---SALLLPSIE--ECANLDIYTQEKAL-------EYLEGKVKRSTFGSPPN-DREGRAF 316
+A IE E A L+ Y Q + E L ++++ F R GR
Sbjct: 204 SFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSESLCEELQKKFFQQKCELGRIGRR- 262
Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAV--MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
++ R + L ++P ++ P+ A ++ E + D DD +++ NKR+
Sbjct: 263 NMNRRLNL-DIPQNSTFLLPRDVLAATDHLIGMKFETGILDD--DDMNHLKNKRIRSVAD 319
Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST--GNF 432
L+ F + VQKT+ + + S+ + L + S ++ L T T G +
Sbjct: 320 LLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTL---VTPTSTSILLITTYETFFGTY 376
Query: 433 DVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
+ + +TQ + ++S +G G +T + F +SR + PS +G +CP
Sbjct: 377 PLSQVFDQTNPLTQTVHGRKVSCLGP-GGLTGRTASF-RSRDI------HPSHYGRICPI 428
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
DT EG GL +LA+ H D G + S Y
Sbjct: 429 DTSEGINVGLTGSLAI--HARIDHWWGSVESPFY 460
Score = 54 (24.1 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 664 HIE-IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
H+ I PF + LIP+ HN + R M +QA+
Sbjct: 522 HVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRF-KDVRIGQPSMTV-DGVS 98
+ G + + F F+N G+ + + I F F K ++ +PS+ D V
Sbjct: 12 IPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLLEPSIKERDAVY 71
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
E L TY++ + V+ + G +K T+ IG IPIM
Sbjct: 72 ESL----------TYSSELYVSARLIFGFDVQKQTIS-----IGNIPIM 105
Score = 40 (19.1 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 599 RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR-EGLIEYLDVNEENNALIALYE 655
RV R I+ +S ++KE+LD V + FL E + + A++ Y+
Sbjct: 169 RVSRKQKISILVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQ 226
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 337 (123.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 96/337 (28%), Positives = 167/337 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA M + GY+ EDA+++++ + ++KY + ++++I
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 800 RPDRTGPGAER--MQILDDDGLAAPGEIIKPNDVYINKESP-LETRGSIMSPTGQTDSRY 856
+ P E ++ LD +G+ G ++ D+ + K +P + + S ++ G + +
Sbjct: 716 KEI---PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIF 772
Query: 857 ----RSARQT-YKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910
++++T K P G V+D + D D+ ++ I R ++GDK + RHG
Sbjct: 773 GLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPL-DIMVRVYILQKREIKVGDKVAGRHGN 831
Query: 911 KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970
KG+ I+ ++D P+ + G D++ NP G PSRM VG++ E G AG + HY A
Sbjct: 832 KGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKK-HYRIA 890
Query: 971 -FGEPSGH--------ADTVESISETLVKHGFS--YNGKDMIYSGITGCPLQAYIFMGPI 1019
F E ++ E+ +T F Y GK I+ G TG P + + +G
Sbjct: 891 PFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKS 950
Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
Y KL H V +K+H R +GP ++T+QP GRA+ GG
Sbjct: 951 YILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Score = 118 (46.6 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 92/394 (23%), Positives = 166/394 (42%)
Query: 154 VLYGKD-EAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVI-IDTDKKGNINAX 210
+++G D + + +G P+ + G FII G ++++ Q LS + D KG I+
Sbjct: 86 LIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYYRSELDHKG-ISIY 144
Query: 211 XXXXXXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY- 269
+ ++K + +KI I+V+ AMG +E++ V +
Sbjct: 145 TGTIISDWGGRSELAIDKKERIWARVSRKQKISILVLSSAMGSNL-KEILDNVSYPEIFL 203
Query: 270 ---SALLLPSIE--ECANLDIYTQEKAL-------EYLEGKVKRSTFGSPPN-DREGRAF 316
+A IE E A L+ Y Q + E L ++++ F R GR
Sbjct: 204 SFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSESLCEELQKKFFQQKCELGRIGRR- 262
Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAV--MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
++ R + L ++P ++ P+ A ++ E + D DD +++ NKR+
Sbjct: 263 NMNRRLNL-DIPQNSTFLLPRDVLAATDHLIGMKFETGILDD--DDMNHLKNKRIRSVAD 319
Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST--GNF 432
L+ F + VQKT+ + + S+ + L + S ++ L T T G +
Sbjct: 320 LLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTL---VTPTSTSILLITTYETFFGTY 376
Query: 433 DVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
+ + +TQ + ++S +G G +T + F +SR + PS +G +CP
Sbjct: 377 PLSQVFDQTNPLTQTVHGRKVSCLGP-GGLTGRTASF-RSRDI------HPSHYGRICPI 428
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
DT EG GL +LA+ H D G + S Y
Sbjct: 429 DTSEGINVGLTGSLAI--HARIDHWWGSVESPFY 460
Score = 54 (24.1 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 664 HIE-IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
H+ I PF + LIP+ HN + R M +QA+
Sbjct: 522 HVRSIFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRF-KDVRIGQPSMTV-DGVS 98
+ G + + F F+N G+ + + I F F K ++ +PS+ D V
Sbjct: 12 IPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLLEPSIKERDAVY 71
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
E L TY++ + V+ + G +K T+ IG IPIM
Sbjct: 72 ESL----------TYSSELYVSARLIFGFDVQKQTIS-----IGNIPIM 105
Score = 40 (19.1 bits), Expect = 1.9e-26, Sum P(4) = 1.9e-26
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 599 RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR-EGLIEYLDVNEENNALIALYE 655
RV R I+ +S ++KE+LD V + FL E + + A++ Y+
Sbjct: 169 RVSRKQKISILVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQ 226
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 382 (139.5 bits), Expect = 3.9e-34, P = 3.9e-34
Identities = 80/172 (46%), Positives = 112/172 (65%)
Query: 251 MGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPP 308
MG+ESDQE+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P
Sbjct: 1 MGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPK 60
Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
+ A +L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKR
Sbjct: 61 KTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKR 119
Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
LEL+GQL+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT
Sbjct: 120 LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQIT 170
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 162 (62.1 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 38/84 (45%), Positives = 51/84 (60%)
Query: 884 GDLCIK--FL-IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
G LCI F+ ++H +P GDK + RHG KGV IV ED P+ E G D+I+N G
Sbjct: 1074 GVLCIVKVFVAVKHNLQP--GDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLG 1131
Query: 941 FPSRMTVGKMIELLGGKAGVSCGR 964
PSRM VG+++E G A V+ G+
Sbjct: 1132 VPSRMNVGQILETHLGWASVNLGK 1155
Score = 122 (48.0 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 39/169 (23%), Positives = 83/169 (49%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
+++++V + ++DD D++GN+R+ G+ + E+ F+ I +++ + +S +
Sbjct: 452 VIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFI----ENQFRIGILRLERMIMDYMSSVN 507
Query: 404 RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMT 461
+ F+ + L+ S+ + +F +++V RLS +G G +T
Sbjct: 508 FDNAMPCD-FVNPKVLATVLKDFFSSSQ--LSQFMDQTNPLSEVTHKRRLSALGP-GGLT 563
Query: 462 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
R FE R + P+ +G +CP +TPEG+ GL+ +LA+ +
Sbjct: 564 RERAGFEV-------RDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 116 (45.9 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 964 RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
R G P IS L +G+ +Y G G + +G IY K
Sbjct: 1203 RLRDGVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLK 1262
Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
L H+V DK+HAR GP ++T+QP G++ GG
Sbjct: 1263 LHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGG 1295
Score = 100 (40.3 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 26/101 (25%), Positives = 51/101 (50%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA MS+ GY+ ED+IV++ + + I ++++ + + ++I+
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEFECVVRD-TTLGPEKIM 874
Query: 800 R--PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
R PD + + LDD G+ G + D+ + K +P
Sbjct: 875 RSVPDIN---EDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912
Score = 97 (39.2 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 54/238 (22%), Positives = 108/238 (45%)
Query: 44 LVKQHLDSFNYFV----NT--GIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
L+K DS+N F+ NT GI+ I ++ I + ++ L F IG+P
Sbjct: 36 LIKIQRDSYNAFIGIDQNTESGIKNIFQSMFPIQDLLGRAV-LEFVSYSIGEP------- 87
Query: 98 SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG 157
+ + + C +T++ PI + + ++ E + E VV S + + Y
Sbjct: 88 --QYDEYECIKRGITFSVPIRIVLRFIVWKVQEVSFKEVKYVVDEET-----SEKSIKYI 140
Query: 158 KDEAELARLGECP-LDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXX 216
K++ E++ +G+ P + G FII G E+V++ Q S V D+DK ++
Sbjct: 141 KEQ-EVS-IGDLPTMTSHGTFIINGIERVIVSQMHRSPG-VFFDSDKGKTYSSGKLIYSA 197
Query: 217 XXX--XXXXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY 269
+ E K +Y +++ +K+P+ ++++A+G+ S+ +++ RY
Sbjct: 198 RIIPYRGSWLDFEFDIKDILYFRIDR-KRKLPVSLLLRALGL-SNNDILDTFYDKIRY 253
Score = 59 (25.8 bits), Expect = 7.8e-34, Sum P(6) = 7.8e-34
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 661 DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
+ +I++ P I+ V A LIP+ +N + R M +QA+
Sbjct: 673 EVDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 714
Score = 49 (22.3 bits), Expect = 5.3e-29, Sum P(6) = 5.3e-29
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIG 88
+D+ + LP L +R L + D + F + IR + +V P + RF+ VR+
Sbjct: 221 IDRKRKLPVSLLLRALGLSNNDILDTFYDK-IRYVKSEKGWVV----PFVADRFRGVRLS 275
Query: 89 QPSMTVDG-VSEKLN 102
M DG V K N
Sbjct: 276 HDLMDSDGNVLVKAN 290
Score = 41 (19.5 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
T Q GK G F ++ Y Y + +LT ++ ++VG K+
Sbjct: 1283 TQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVGRVKI 1332
Score = 40 (19.1 bits), Expect = 8.4e-28, Sum P(6) = 8.4e-28
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 819 LAAPGEIIKPNDV 831
L PG+ +K NDV
Sbjct: 793 LVKPGDYVKANDV 805
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 149 (57.5 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
++ T +P GDK + RHG KGV I ED P+ E+G D+++NP G PSRM +G+++
Sbjct: 1057 VKRTIQP--GDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVL 1114
Query: 952 ELLGGKAGVSCG 963
E+ G A G
Sbjct: 1115 EVHLGAAAKGIG 1126
Score = 133 (51.9 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 47/170 (27%), Positives = 83/170 (48%)
Query: 341 VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
VAVM + ++ D +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 427 VAVM-KNIIHIRNGFDEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVR---- 477
Query: 401 KPSRSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIG 455
R S DL++ + +D I + + G+ + +F +++V R+S +G
Sbjct: 478 --ERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 535
Query: 456 TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
G +TR FE R + P+ +G LCP +TPEG GL+ +LA
Sbjct: 536 P-GGLTRERAGFEV-------RDVHPTHYGRLCPIETPEGPNIGLINSLA 577
Score = 127 (49.8 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 982 ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1041
+ I + L G +G+ ++ G TG + + +G +Y KL H+V DKMHAR +G
Sbjct: 1196 KEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1255
Query: 1042 MLTRQPTEGRARNGG 1056
++T+QP G+A+ GG
Sbjct: 1256 LVTQQPLGGKAQFGG 1270
Score = 94 (38.1 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 741 LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
L GQN +A M ++GY+ ED+I++++ I +++ + I + + + +
Sbjct: 795 LALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEE--IT 852
Query: 801 PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
D G + LD+ G+ G +K D+ + K +P
Sbjct: 853 ADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTP 890
Score = 89 (36.4 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 39/155 (25%), Positives = 70/155 (45%)
Query: 26 KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVN---TGIRKIVRANDRI--VSGIDPSIFL 80
K + F P+ L + L+ LDSF F + TG R + A + + + L
Sbjct: 9 KRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIKSFSGNSEL 68
Query: 81 RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-----QGSHTEKTTME 135
++ ++G+P V V E C++ +TY+AP+ V + V + T K E
Sbjct: 69 QYVSYKLGEP---VFDVKE------CQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKE 119
Query: 136 KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
+ +V +G IP+M + V+ G + +++L P
Sbjct: 120 Q-EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSP 153
Score = 64 (27.6 bits), Expect = 8.1e-34, Sum P(6) = 8.1e-34
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 654 YEGDAT----PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++G++T D ++++ P I+ V A LIP+ H+ + R M +QA+
Sbjct: 639 HKGESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAV 691
Score = 62 (26.9 bits), Expect = 4.2e-31, Sum P(6) = 4.2e-31
Identities = 24/104 (23%), Positives = 50/104 (48%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+G+ PL G F+I GTE+V++ Q S V D D+ G ++
Sbjct: 124 MGDIPLMTDNGTFVINGTERVIVSQLHRSPG-VFFDHDR-GKTHSSGKVLYNARIIPYRG 181
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
+ E K +++ +++ +K+P ++++A+ S QE++ +
Sbjct: 182 SWLDFEFDPKDALFVRIDRR-RKLPATIILRALEY-STQEILDL 223
Score = 39 (18.8 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 810 RMQILDDDGLAAPGEIIKPNDVYINKESPLET 841
RM + D + A + IK +VY+ + PL T
Sbjct: 101 RMVLYDREAAAGTVKDIKEQEVYMG-DIPLMT 131
Score = 38 (18.4 bits), Expect = 3.4e-31, Sum P(6) = 3.4e-31
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 605 VIADKGISRIKEHHMKELLDGVRSFDD--FLREGLIEYLDVNEENNALIA 652
VIA I E M E R + F+R I+Y+DV+ + +A
Sbjct: 616 VIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQIISVA 665
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 155 (59.6 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K I R+ ++GDK + RHG KGV I+ +ED P+ E G ++++NP G PSRM V
Sbjct: 1078 VKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNV 1137
Query: 948 GKMIELLGGKAGVSCG 963
G+++E G A G
Sbjct: 1138 GQILETHLGWAAKGIG 1153
Score = 152 (58.6 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 964 RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
R G A P + E I L K GF + +Y G +G P + + +G +Y K
Sbjct: 1200 RLQRGVAMASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLK 1259
Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
L H+V DK+HAR GP ++T+QP G+A+ GG
Sbjct: 1260 LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGG 1292
Score = 113 (44.8 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 40/172 (23%), Positives = 81/172 (47%)
Query: 341 VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
V ++R +++ K +DD D++GN+R+ G+L+ E+ ++ + +++ +
Sbjct: 433 VLEVVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELL----ENQYRIGLVRMERAIK---E 485
Query: 401 KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
+ S +L + +S V G+ + +F +++V RLS +G G
Sbjct: 486 RMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGP-G 544
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
+TR FE R + P+ +G +CP +TPEG GL+ +L+ +
Sbjct: 545 GLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLIASLSTYARI 589
Score = 109 (43.4 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L GQN VA M + GY+ ED+I++++ + I ++++ + + + +
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLGKEE--I 858
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
D G E ++ LD+ G+ G +KP D+ + K +P
Sbjct: 859 TSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITP 897
Score = 70 (29.7 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 29/147 (19%), Positives = 61/147 (41%)
Query: 32 FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-LR-FKDVRIGQ 89
F + + + + L+ +S+ F+ R N + + S+F ++ F D
Sbjct: 15 FAKIKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGL-EAVFKSVFPIKDFSDTA-SL 72
Query: 90 PSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT------TMEKNDVVIGR 143
+T + K + C MT+AAP+ V + V + T +++ +V G
Sbjct: 73 EYVTYTLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYFGE 132
Query: 144 IPIMLRSCRCVLYGKDEAELARLGECP 170
IP+M + ++ G + +++L P
Sbjct: 133 IPLMTENGTFIINGTERVIVSQLHRSP 159
Score = 67 (28.6 bits), Expect = 1.3e-32, Sum P(6) = 1.3e-32
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 167 GECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---XX 222
GE PL G FII GTE+V++ Q S V D DK G ++
Sbjct: 131 GEIPLMTENGTFIINGTERVIVSQLHRSPG-VFYDHDK-GKTHSSGKVLYSARVIPYRGS 188
Query: 223 XIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
+ E K +++ +++ +K+P V++KA+G ++
Sbjct: 189 WLDFEFDHKDILFVRIDRR-RKMPATVLLKALGYSAE 224
Score = 48 (22.0 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 665 IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
+++ P ++ V A LIP+ ++ + R M +QA+
Sbjct: 661 MDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAV 698
Score = 45 (20.9 bits), Expect = 2.7e-33, Sum P(7) = 2.7e-33
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 234 LLNQFVKKIPIMVVMKAMGMESDQEVV 260
LLN F K I+V + M ++D E++
Sbjct: 226 LLNYFYKSEEILVAAEGMWKKADPELL 252
Score = 44 (20.5 bits), Expect = 5.6e-19, Sum P(5) = 5.6e-19
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL 379
M+ RM E L KD D+ + N + G+L LL
Sbjct: 955 MIERMEEDKLRKDEQDEIRIIRNSAV---GKLKKLL 987
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 153 (58.9 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K + RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM +
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 948 GKMIELLGGKAGVSCG 963
G+++E G A G
Sbjct: 1110 GQILETHLGMAAKGIG 1125
Score = 127 (49.8 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 42/176 (23%), Positives = 86/176 (48%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
+++++++ K +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVK------E 477
Query: 404 RSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
R S DL + +D I + + G+ + +F ++++ R+S +G G
Sbjct: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP-G 536
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
+TR FE R + P+ +G +CP +TPEG GL+ +L++ + T+E
Sbjct: 537 GLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSV--YAQTNE 583
Score = 126 (49.4 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 984 ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1043
I E L +G+ +Y G TG + + +G +Y KL H+V DKMHAR +G ++
Sbjct: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254
Query: 1044 TRQPTEGRARNGG 1056
T+QP G+A+ GG
Sbjct: 1255 TQQPLGGKAQFGG 1267
Score = 91 (37.1 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN-QKYANSTSDRI 798
+L GQN VA M ++GY+ ED+I++++ R + ++T I+ Q+ A + D
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSE--------RVVQEDRFTTIHIQELACVSRDTK 844
Query: 799 LRPDR-TG--P--GAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
L P+ T P G + LD+ G+ G + D+ + K +P
Sbjct: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889
Score = 89 (36.4 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 41/155 (26%), Positives = 70/155 (45%)
Query: 26 KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNT------GIRKIVRANDRIVSGIDPSIF 79
K + F P+ L V L+ LDSF F+ G+ R+ I S S
Sbjct: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE- 67
Query: 80 LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV--QGSHTEKTT--ME 135
L++ R+G+P V V E C++ +TY+AP+ V + V + E T ++
Sbjct: 68 LQYVSYRLGEP---VFDVQE------CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118
Query: 136 KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
+ +V +G IP+M + V+ G + +++L P
Sbjct: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP 153
Score = 77 (32.2 bits), Expect = 3.1e-30, Sum P(6) = 3.1e-30
Identities = 40/153 (26%), Positives = 69/153 (45%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+GE PL G F+I GTE+V++ Q S V D+DK G ++
Sbjct: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPG-VFFDSDK-GKTHSSGKVLYNARIIPYRG 181
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQ------EVVQMVGRDPRYSAL 272
+ E K +++ +++ +K+P ++++A+ ++Q E V RD +
Sbjct: 182 SWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240
Query: 273 LLPSI--EECANLDIYTQEKALEYLEGKVKRST 303
L+P E A+ DI K Y+E K +R T
Sbjct: 241 LVPERLRGETASFDIEANGKV--YVE-KGRRIT 270
Score = 46 (21.3 bits), Expect = 1.9e-31, Sum P(6) = 1.9e-31
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ ++ V A LIP+ H+ + R M +QA+
Sbjct: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690
Score = 44 (20.5 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 33/181 (18%), Positives = 69/181 (38%)
Query: 566 VMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
++++ + K+ EF+ QR + +D + +D+ + R+ E+ K +
Sbjct: 1131 MLKQQQEVAKLREFI-------QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183
Query: 626 VRSFDDFLREGLIEYLDVNE-ENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPH 684
FD + E L + + + I LY+G + + + L+
Sbjct: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243
Query: 685 HNQSPRN----TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
H +S + T Q GK G F ++ Y Y + +LT ++ ++ G K
Sbjct: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303
Query: 741 L 741
+
Sbjct: 1304 M 1304
Score = 39 (18.8 bits), Expect = 3.2e-22, Sum P(5) = 3.2e-22
Identities = 24/111 (21%), Positives = 45/111 (40%)
Query: 275 PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
P+I +L +Y Q +LE ++ T G + E S + + + N+N
Sbjct: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD--EIHYLSAIEEGNYV-IAQANSNL 623
Query: 335 RPKCFYVA--VMLRRMVEAML-NKDAMDDKDYVGNKRLELSGQLVSLLFED 382
+ +V V R E+ L ++D +D D + + + L+ L D
Sbjct: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 151 (58.2 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K + R + GDK + RHG KGV +V ED P+ + G+ D+++NP G PSRM +
Sbjct: 1051 VKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSRMNI 1110
Query: 948 GKMIELLGGKA 958
G+++E G A
Sbjct: 1111 GQILETHLGMA 1121
Score = 130 (50.8 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 963 GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1022
G G P+ + I E V +G+ ++ G TG + + +G +Y
Sbjct: 1174 GNLRAGLPIATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYML 1233
Query: 1023 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
KL H+V DKMHAR +G ++T+QP G+A+ GG
Sbjct: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267
Score = 120 (47.3 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 52/208 (25%), Positives = 95/208 (45%)
Query: 341 VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
++VM + ++ K +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 427 ISVM-KTLIGIRDGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVR---- 477
Query: 401 KPSRSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIG 455
R S DL + +D I + + G+ + +F +++V R+S +G
Sbjct: 478 --ERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 535
Query: 456 TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
G +TR FE R + P+ +G +CP +TPEG GL+ +L+ T D
Sbjct: 536 P-GGLTRERAGFEV-------RDVHPTHYGRVCPIETPEGPNIGLINSLSCYAR-TNDFG 586
Query: 516 --EGPLISLCYCLGVEDLELLSGEELHN 541
E P + L ++++ LS E N
Sbjct: 587 FLETPYRKVIDGLVTDEIDYLSAIEEGN 614
Score = 88 (36.0 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 23/100 (23%), Positives = 51/100 (51%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKS-SLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
+L GQN +A M ++GY+ ED++++++ +++ F I +++ T I + + +
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRF-TTIHIQELTCIARDTKLGSEE-- 850
Query: 799 LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
+ D G + LD+ G+ G + D+ + K +P
Sbjct: 851 ITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTP 890
Score = 80 (33.2 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 36/137 (26%), Positives = 62/137 (45%)
Query: 44 LVKQHLDSFNYFVNT---GIRKIVRANDRI--VSGIDPSIFLRFKDVRIGQPSMTVDGVS 98
L+ LDSF F++T G + A I + S L++ R+G+P V
Sbjct: 27 LLSIQLDSFRKFIDTDPTGETGLEAAFRSIFPIKAYSGSSELQYVSYRLGEPLFDV---K 83
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYV-----QGSHTEKTTMEKNDVVIGRIPIMLRSCRC 153
E C++ +TY+AP+ V + V + T K E+ +V +G IP+M +
Sbjct: 84 E------CQIRGVTYSAPLRVKLRLVVYDKEAAAGTVKDIKEQ-EVYMGEIPLMTDNGTF 136
Query: 154 VLYGKDEAELARLGECP 170
V+ G + +++L P
Sbjct: 137 VINGTERVIVSQLHRSP 153
Score = 68 (29.0 bits), Expect = 7.6e-30, Sum P(7) = 7.6e-30
Identities = 26/104 (25%), Positives = 50/104 (48%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+GE PL G F+I GTE+V++ Q S V D DK G ++
Sbjct: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPG-VFFDHDK-GKTHSSGKVLYNARVIPYRG 181
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
+ E K +++ +++ +K+P ++++A+ S +E++ M
Sbjct: 182 SWLDFEFDPKDNLFVRIDRR-RKLPASIILRALEY-STEEILAM 223
Score = 63 (27.2 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 658 ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
A+ + ++++ P I+ V A LIP+ H+ + R M +QA+
Sbjct: 647 ASAEVQYMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAV 691
Score = 41 (19.5 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 810 RMQILDDDGLAAPGEIIKPNDVYINKESPLET 841
R+ + D + A + IK +VY+ E PL T
Sbjct: 101 RLVVYDKEAAAGTVKDIKEQEVYMG-EIPLMT 131
Score = 38 (18.4 bits), Expect = 7.2e-27, Sum P(7) = 7.2e-27
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 183 EKVLLIQEQLSKNRVIIDTDKKG 205
E L+ QL R IDTD G
Sbjct: 23 EYPFLLSIQLDSFRKFIDTDPTG 45
Score = 37 (18.1 bits), Expect = 4.9e-31, Sum P(7) = 4.9e-31
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 638 IEYLDVNEENNALIA 652
I+YL EE N +IA
Sbjct: 604 IDYLSAIEEGNFVIA 618
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 224 (83.9 bits), Expect = 8.0e-31, Sum P(4) = 8.0e-31
Identities = 70/237 (29%), Positives = 118/237 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
++ G+N VA+M + G++ EDAI+++ ++ I ++++ I+ + ++ I
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHE-IDARDTKLGAEEIT 761
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQT-----D 853
R D E + LD+ G+ G ++ D+ + K +P ET ++P +
Sbjct: 762 R-DIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETE---LTPEERLLRAIFG 817
Query: 854 SRYRSARQT-YKGPDGETCVVDRVALCSDKNGDLC---IKFLIR----HTRRPELGDKFS 905
+ R R T K P GE+ V + + S ++ D + L+R R+ GDK +
Sbjct: 818 EKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLA 877
Query: 906 SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL-LG--GKAG 959
RHG KGV G I+ ED PF G D+I+N HG P RM +G+++E LG KAG
Sbjct: 878 GRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAG 934
Score = 134 (52.2 bits), Expect = 8.0e-31, Sum P(4) = 8.0e-31
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 996 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1055
+GK ++ G +G P + +G +Y KL H+V DK+HAR +GP M+T+QP G+A+ G
Sbjct: 996 DGKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFG 1055
Query: 1056 G 1056
G
Sbjct: 1056 G 1056
Score = 125 (49.1 bits), Expect = 8.0e-31, Sum P(4) = 8.0e-31
Identities = 88/390 (22%), Positives = 166/390 (42%)
Query: 157 GKDEAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDT-DKKGNINAXXXXX 214
G+ +++ +G+ P+ G FII GTE+V++ Q S +T DK
Sbjct: 136 GEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKV 195
Query: 215 XXXXXXXXXIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLL 274
++K + ++ P+ V++KA+G ++Q +V+ G +S +++
Sbjct: 196 IPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQ-IVERFG----FSEIMM 250
Query: 275 PSIEEC-------ANLDIY---------TQEKALEYLEG---KVKRSTFGSPPNDREGRA 315
++E+ A LDIY T+E A LE K KR R GR
Sbjct: 251 GTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA-----RVGR- 304
Query: 316 FSILRDVFL-ANVPVHNNNFRPKCFYVAV-MLRRMVEAMLNKDA---------MDDKDYV 364
+ + + + L A P+ ++ + + L R+ E + +DD D+
Sbjct: 305 YKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDDIDHF 364
Query: 365 GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
GN+RL G+L+ ++ + +S +++ V R + D+ + I +
Sbjct: 365 GNRRLRTVGELI----QNQIRVGLSRMERVVR------ERMTTQDVEAITPQTLINI--- 411
Query: 425 RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK--SRKVSG--PRALQ 480
R + +K F ++Q + + + + L H R+S SR+ +G R +
Sbjct: 412 RPVVAA---IKEF-FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH 467
Query: 481 PSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
PS +G +CP +TPEG GL+ +L++ V
Sbjct: 468 PSHYGRMCPIETPEGPNIGLIGSLSVYARV 497
Score = 121 (47.7 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 50/195 (25%), Positives = 83/195 (42%)
Query: 3 LMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRK 62
++ V K + + AP + F L E L+V GL+ DSF + V + +
Sbjct: 6 ILAVSSQSKSNAITNNSVPGAPNRV---SFAKLREPLEVPGLLDVQTDSFEWLVGSDRWR 62
Query: 63 ---IVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD----GVSE-KLNPHMCRLSDMTYA 114
I R + V G++ + + SM++ E K + C+ DMTYA
Sbjct: 63 QAAIDRGEENPVGGLE-EVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTYA 121
Query: 115 APILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
AP+ V E++ + E ++ V +G P+M ++ G + +++L PG
Sbjct: 122 APLFVTAEFINNNTGE---IKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR---SPG 175
Query: 175 GYF---IIKGTEKVL 186
YF I K TEK L
Sbjct: 176 VYFDETIDKSTEKTL 190
Score = 49 (22.3 bits), Expect = 8.0e-31, Sum P(4) = 8.0e-31
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ P ++ V +IP+ H+ + R M +QA+
Sbjct: 569 YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 348 (127.6 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 87/226 (38%), Positives = 121/226 (53%)
Query: 724 QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-K 782
Q PL+ + D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K +
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLET 841
+ +++K S + PG R +Q LDDDGL G ++ D Y S L
Sbjct: 163 FIDLSEKIKQGDSSLVFG---IKPGDPRVLQKLDDDGLPFIGAKLQYGDPYY---SYLNL 216
Query: 842 RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRP 898
TG++ Y YK E CVVD + +CS+ G C+ +R R P
Sbjct: 217 N------TGESFVMY------YKSK--ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 262
Query: 899 ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 944
+GDKF+SRHGQKG+ + ED PF+E G+ PD++ NPHGFPSR
Sbjct: 263 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 308
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 153 (58.9 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K + RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM +
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNI 1109
Query: 948 GKMIELLGGKAGVSCG 963
G+++E+ G A G
Sbjct: 1110 GQILEVHLGLAAKGIG 1125
Score = 120 (47.3 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 996 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1055
+G+ ++ G TG + + +G +Y KL H+V DKMHAR +G ++T+QP G+A+ G
Sbjct: 1206 SGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1265
Query: 1056 G 1056
G
Sbjct: 1266 G 1266
Score = 117 (46.2 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 41/167 (24%), Positives = 79/167 (47%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
++++++ K +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVK------E 477
Query: 404 RSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
R S DL + +D I + + G+ + +F +++V R+S +G G
Sbjct: 478 RLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP-G 536
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+TR FE R + + +G LCP +TPEG GL+ +L+
Sbjct: 537 GLTRERAGFEV-------RDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 92 (37.4 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L GQN +A M ++GY+ ED+I++++ + I +++ + + + + +
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEE--I 850
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
D G + LD+ G+ G +K D+ + K +P
Sbjct: 851 TADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 82 (33.9 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 39/156 (25%), Positives = 69/156 (44%)
Query: 26 KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNT------GIRKIVRANDRIVSGIDPSIF 79
K + F P+ L + L+ LDSF F+ G+ R+ I S + +
Sbjct: 9 KRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQS-YNGNSE 67
Query: 80 LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-----QGSHTEKTTM 134
L++ R+G+P V V E C++ +TY+ P+ V + V + T K
Sbjct: 68 LQYVSYRLGEP---VFDVKE------CQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK 118
Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
E+ +V +G IP+M + V+ G + +++L P
Sbjct: 119 EQ-EVYMGEIPLMTENGTFVINGTERVIVSQLHRSP 153
Score = 80 (33.2 bits), Expect = 4.0e-29, Sum P(6) = 4.0e-29
Identities = 41/153 (26%), Positives = 67/153 (43%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+GE PL G F+I GTE+V++ Q S V D+DK G ++
Sbjct: 124 MGEIPLMTENGTFVINGTERVIVSQLHRSPG-VFFDSDK-GKTHSSGKVLYNARIIPYRG 181
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQ------EVVQMVGRDPRYSAL 272
+ E K +Y+ +++ +K+P ++++A+G S + E V +D
Sbjct: 182 SWLDFEFDPKDNLYVRIDRR-RKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
Query: 273 LLPSI--EECANLDIYTQEKALEYLEGKVKRST 303
L+P E A DI K Y+E K +R T
Sbjct: 241 LVPERLRGETATFDIEADGKV--YVE-KGRRVT 270
Score = 47 (21.6 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ ++ + A LIP+ H+ + R M +QA+
Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 46 (21.3 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 577 GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
G+FV N K + +GG + KG S + + +D + +
Sbjct: 612 GQFVIAQANAK-----LTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAAS 666
Query: 637 LIEYLDVNEENNALI-ALYEGDATPDTTHIEIEPFTILGV 675
LI +L+ ++ N AL+ A + A P T E +P G+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAVP-TLRSE-KPLVGTGI 704
Score = 45 (20.9 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 810 RMQILDDDGLAAPGEIIKPNDVYINKESPLET 841
R+ I D D A + IK +VY+ E PL T
Sbjct: 101 RLVIFDKDAPAGTVKDIKEQEVYMG-EIPLMT 131
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 153 (58.9 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K + RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM +
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNI 1109
Query: 948 GKMIELLGGKAGVSCG 963
G+++E+ G A G
Sbjct: 1110 GQILEVHLGLAAKGIG 1125
Score = 120 (47.3 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 996 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1055
+G+ ++ G TG + + +G +Y KL H+V DKMHAR +G ++T+QP G+A+ G
Sbjct: 1206 SGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1265
Query: 1056 G 1056
G
Sbjct: 1266 G 1266
Score = 117 (46.2 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 41/167 (24%), Positives = 79/167 (47%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
++++++ K +DD D++GN+R+ G++ E+ F+ + V++ V
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVK------E 477
Query: 404 RSSRFDLSQFIVRDSITVG-LERTLST--GNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
R S DL + +D I + + G+ + +F +++V R+S +G G
Sbjct: 478 RLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP-G 536
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
+TR FE R + + +G LCP +TPEG GL+ +L+
Sbjct: 537 GLTRERAGFEV-------RDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 92 (37.4 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L GQN +A M ++GY+ ED+I++++ + I +++ + + + + +
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEE--I 850
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
D G + LD+ G+ G +K D+ + K +P
Sbjct: 851 TADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 82 (33.9 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 39/156 (25%), Positives = 69/156 (44%)
Query: 26 KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNT------GIRKIVRANDRIVSGIDPSIF 79
K + F P+ L + L+ LDSF F+ G+ R+ I S + +
Sbjct: 9 KRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQS-YNGNSE 67
Query: 80 LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-----QGSHTEKTTM 134
L++ R+G+P V V E C++ +TY+ P+ V + V + T K
Sbjct: 68 LQYVSYRLGEP---VFDVKE------CQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK 118
Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
E+ +V +G IP+M + V+ G + +++L P
Sbjct: 119 EQ-EVYMGEIPLMTENGTFVINGTERVIVSQLHRSP 153
Score = 80 (33.2 bits), Expect = 4.0e-29, Sum P(6) = 4.0e-29
Identities = 41/153 (26%), Positives = 67/153 (43%)
Query: 166 LGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXX---X 221
+GE PL G F+I GTE+V++ Q S V D+DK G ++
Sbjct: 124 MGEIPLMTENGTFVINGTERVIVSQLHRSPG-VFFDSDK-GKTHSSGKVLYNARIIPYRG 181
Query: 222 XXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQ------EVVQMVGRDPRYSAL 272
+ E K +Y+ +++ +K+P ++++A+G S + E V +D
Sbjct: 182 SWLDFEFDPKDNLYVRIDRR-RKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
Query: 273 LLPSI--EECANLDIYTQEKALEYLEGKVKRST 303
L+P E A DI K Y+E K +R T
Sbjct: 241 LVPERLRGETATFDIEADGKV--YVE-KGRRVT 270
Score = 47 (21.6 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
++++ ++ + A LIP+ H+ + R M +QA+
Sbjct: 652 YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 46 (21.3 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 577 GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
G+FV N K + +GG + KG S + + +D + +
Sbjct: 612 GQFVIAQANAK-----LTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAAS 666
Query: 637 LIEYLDVNEENNALI-ALYEGDATPDTTHIEIEPFTILGV 675
LI +L+ ++ N AL+ A + A P T E +P G+
Sbjct: 667 LIPFLEHDDANRALMGANMQRQAVP-TLRSE-KPLVGTGI 704
Score = 45 (20.9 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 810 RMQILDDDGLAAPGEIIKPNDVYINKESPLET 841
R+ I D D A + IK +VY+ E PL T
Sbjct: 101 RLVIFDKDAPAGTVKDIKEQEVYMG-EIPLMT 131
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 166 (63.5 bits), Expect = 2.0e-28, Sum P(4) = 2.0e-28
Identities = 89/378 (23%), Positives = 153/378 (40%)
Query: 644 NEENNALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
N E++ LI+ E A D T I IE F + L P P +
Sbjct: 830 NYEDSILIS--ERIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEA 887
Query: 703 GNIAFNQLCRMDSLLYLLVYP--QRPLLTT-RTIELVGYDKLGAGQNATVAVMSYSGYDI 759
G + + +L + P + P+ + + + +K ++ ++ V +
Sbjct: 888 GIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTV 947
Query: 760 EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGL 819
+ V N+ +D+ R + +++ ++ A D + DR + IL +
Sbjct: 948 VEVRVFNRHGVDKD-ERALQIEREEV--ERLARDRDDELAILDRNIYARLKSLILGKTAV 1004
Query: 820 AAPGEIIKPNDVYINKESPLETRGS--IMSPTGQTDSRYRSA-RQTY----KGPDGE-TC 871
P + IKP + TRG +++ G+ D++ A + Y + D
Sbjct: 1005 KGP-KGIKPGSEITEELLETLTRGQWWMLALEGEQDAQIVEALNEQYELQKRALDARFED 1063
Query: 872 VVDRVALCSD-KNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
V++V D G + +K I R+ + GDK + RHG KGV +V ED PF G
Sbjct: 1064 KVEKVRRGDDLPPGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADG 1123
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
D +NP G PSRM VG+++E G A G + A E D + + + +
Sbjct: 1124 TPVDFCLNPLGVPSRMNVGQILETHMGWAARGLG-LNVDEALQEYRRSGD-LTPVRDAM- 1180
Query: 990 KHGFSYNGKDMIYSGITG 1007
KH + G+D+ GI+G
Sbjct: 1181 KHAY---GEDVYAEGISG 1195
Score = 141 (54.7 bits), Expect = 2.0e-28, Sum P(4) = 2.0e-28
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 984 ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1043
+++ L + GF +G+ +++ G TG + +G Y KL H+V DK+HAR +GP ++
Sbjct: 1227 VNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDKIHARSTGPYSLV 1286
Query: 1044 TRQPTEGRARNGG 1056
T+QP G+A+ GG
Sbjct: 1287 TQQPLGGKAQFGG 1299
Score = 123 (48.4 bits), Expect = 2.0e-28, Sum P(4) = 2.0e-28
Identities = 41/172 (23%), Positives = 80/172 (46%)
Query: 341 VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
+ ++ +VE K +DD D++GN+R+ G+L+ E+ ++ + +++ + +S
Sbjct: 445 IIACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM----ENQYRVGLLRMERAIKERMS 500
Query: 401 KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLG 458
+ + Q ++ R G+ + +F +++V RLS +G G
Sbjct: 501 SVEIDTV--MPQDLINAKPAAAAVREFF-GSSQLSQFMDQTNPLSEVTHKRRLSALGP-G 556
Query: 459 HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
+TR FE R + P+ +G +CP +TPEG GL+ +LA V
Sbjct: 557 GLTRERAGFEV-------RDVHPTHYGRMCPIETPEGPNIGLINSLATFARV 601
Score = 103 (41.3 bits), Expect = 2.2e-22, Sum P(5) = 2.2e-22
Identities = 36/143 (25%), Positives = 65/143 (45%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA M ++GY+ ED+I++++ I ++++ + + + I
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFE-VAARDTKLGPEEIT 870
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINK-----ESPLETRGSIMSPT-GQTD 853
R D G E ++ LD+ G+ G ++P D+ + K ESP+ ++ G+
Sbjct: 871 R-DIPNVGEEALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKA 929
Query: 854 SRYRSARQTYKGPDGETCVVDRV 876
S R K D T V RV
Sbjct: 930 SDVRDTSLRVKPGDYGTVVEVRV 952
Score = 85 (35.0 bits), Expect = 2.0e-28, Sum P(4) = 2.0e-28
Identities = 53/231 (22%), Positives = 103/231 (44%)
Query: 37 EFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-LR-FKDVRIGQPSMTV 94
E L++ L++ S++ F+N+G + I+ G+ S+F ++ F + + + +
Sbjct: 20 EVLEMPNLIEVQKSSYDLFLNSGDAPQPLDGEGIM-GVFQSVFPIKDFNETSVLE-FVKY 77
Query: 95 DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
+ K + C DMTY+AP+ V + + E T G +S + +
Sbjct: 78 ELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDT---------GA-----KSVKDI 123
Query: 155 LYGKDEAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXX 213
K++ +G+ PL P G FI+ GTE+V++ Q S V D DK G ++
Sbjct: 124 ---KEQDVF--MGDMPLMTPNGTFIVNGTERVIVSQMHRSPG-VFFDHDK-GKTHSSGKL 176
Query: 214 XXXXXXX---XXXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
+ E K ++ +++ +K+P+ ++ A+G+ DQE
Sbjct: 177 LFACRIIPYRGSWLDFEFDAKDIVFARIDRR-RKLPVTTLLYALGL--DQE 224
Score = 49 (22.3 bits), Expect = 2.2e-22, Sum P(5) = 2.2e-22
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 665 IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
I++ P ++ V A LIP+ ++ + R M +QA+
Sbjct: 673 IDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAV 710
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 163 (62.4 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
++HT +P GDK S RHG KGV IV ED P+ G D+I+NP G PSRM VG+++
Sbjct: 1058 VKHTLQP--GDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVGQIL 1115
Query: 952 ELLGGKAGVSCGR 964
E G A + G+
Sbjct: 1116 ETHLGWAAYNLGK 1128
Score = 131 (51.2 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 982 ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1041
+ I LV G +G++++Y G+TG + +G Y KL H+V DK+HAR G
Sbjct: 1192 DEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKIHARSIGSYS 1251
Query: 1042 MLTRQPTEGRARNGG 1056
++T+QP G++ GG
Sbjct: 1252 LITQQPLGGKSHFGG 1266
Score = 101 (40.6 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA +S+ GY+ ED++V++ + + + ++ + + + + I
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRD-TRLGPEEIT 843
Query: 800 RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
R D +G E + LD+ G+A G ++ DV + K +P
Sbjct: 844 R-DVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTP 881
Score = 83 (34.3 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 38/167 (22%), Positives = 72/167 (43%)
Query: 351 AMLNKDA--MDDKDYVGNKRLELSGQLVSLLFE-DLFKT--MISEVQKTVDIILSKPSRS 405
A+L ++ +DD D++GN+R+ G+ + F L + +I E T D P
Sbjct: 429 ALLQREVGDVDDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFDTVMPCEM 488
Query: 406 SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMTRV 463
+ ++R+ + LS +F ++++ R+S +G G + R
Sbjct: 489 INSKILGAVIREFF---MSSALS-------QFMDQTNPLSEITHKRRISALGP-GGLNRG 537
Query: 464 SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
FE R + + +G +C +TPEG GL+ +LA+ +
Sbjct: 538 RAGFEV-------RDVHTTHYGRICATETPEGATIGLINSLAIYAKI 577
Score = 72 (30.4 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 54/226 (23%), Positives = 99/226 (43%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVS----- 98
LVK DS+ FV G D + S D IF V G +++ VS
Sbjct: 19 LVKVQKDSYASFVGGG--------DTVFSISD--IFASVFPVNDGYGRASLEFVSCRMGE 68
Query: 99 EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK 158
K + + C +TY+AP+ + V ++T+ E ++ V P + + R
Sbjct: 69 PKHDEYGCVERGITYSAPLRAILRLVVFG--DETSGEGSEGVSTE-PAV-KDVR------ 118
Query: 159 DEAELARLGECPL-DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXX 217
E E+ +G+ P+ G FII G E+V++ Q + V D DK +I+
Sbjct: 119 -EQEIY-MGDIPIMSKNGTFIINGVERVVVSQMHRAPG-VFFDNDKARSISGKLNYIARI 175
Query: 218 XXXXXX-IQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
+ E K +Y +++ +K+P+ +++A+G+ S++++
Sbjct: 176 IPYRGSWLDFEFDAKDVLYFRIDK-KRKLPVTFLLRALGL-SNKDI 219
Score = 42 (19.8 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 814 LDDDGLAAPGEIIKPNDVYINKE 836
L DD ++ GE++ P+ + KE
Sbjct: 299 LADDLVSTKGEVLLPHGTKLTKE 321
Score = 40 (19.1 bits), Expect = 3.0e-27, Sum P(6) = 3.0e-27
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 654 YEGDATP--DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
YE P + ++ I+ V A LIP+ ++ + R M +QA+
Sbjct: 636 YENVFIPRSEVQFADVSAKQIVSVAASLIPFLENDDANRALMGSNMQRQAV 686
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 156 (60.0 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 38/97 (39%), Positives = 49/97 (50%)
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
++H +P GDK + RHG KGV IV ED P E G D+I+N G PSRM +G+++
Sbjct: 1087 VKHNLQP--GDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNIGQIL 1144
Query: 952 ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 988
E G A V+ G G VESI L
Sbjct: 1145 ETHLGWAAVNLGH-RVGRMLDSGEEEGPVVESIRSFL 1180
Score = 121 (47.7 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 53/235 (22%), Positives = 107/235 (45%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
+++++V + +DD D++GN+R+ G+ + E+ F+ I +++ + +S +
Sbjct: 453 VIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFI----ENQFRVGILRLERMIMDYMSSVN 508
Query: 404 RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMT 461
+ F+ + L+ S+ + +F +++V RLS +G G +T
Sbjct: 509 FDNAVPCD-FVNPKILATVLKDFFSSSQ--LSQFMDQTNPLSEVTHKRRLSALGP-GGLT 564
Query: 462 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT-DEEEGPLI 520
R FE R + P+ +G +CP +TPEG+ GL+ +LA+ + E P
Sbjct: 565 RERAGFEV-------RDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPYR 617
Query: 521 SLCYCLGVEDLE-LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
+ + + +E LL+ +E + + + G L ++ R F D M R G
Sbjct: 618 KVIDGVVTDSVEYLLATQE----SDYYIADAGAALDENNR---FVDDMLYCRHGG 665
Score = 117 (46.2 bits), Expect = 2.3e-21, Sum P(5) = 2.3e-21
Identities = 30/93 (32%), Positives = 43/93 (46%)
Query: 964 RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
R G P IS L +G+ +Y G +G + +G IY K
Sbjct: 1207 RLRRGVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLK 1266
Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
L H+V DK+HAR GP ++T+QP G++ GG
Sbjct: 1267 LHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGG 1299
Score = 99 (39.9 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
+L G+N VA MS+ GY+ ED+IV++ + R I ++++ + + ++I+
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDTPLGP-EKIM 875
Query: 800 R--PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESP 838
R PD E + LDD G+ G + V + K +P
Sbjct: 876 RSVPD---VNEESLSHLDDVGIVNIGAEVSAGSVLVGKVTP 913
Score = 91 (37.1 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 51/226 (22%), Positives = 101/226 (44%)
Query: 44 LVKQHLDSFNYFVNT------GIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
L++ DS++ F+ GI+ I ++ I + ++ L F IG+P
Sbjct: 37 LIRIQRDSYDAFIGIDEGSSGGIQSIFQSMFPIRDPLGRAV-LEFVSCNIGEP------- 88
Query: 98 SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI-GRIPIMLRSCRCVLY 156
+ + + C +T++ P+ + + +V E + E VV G + R V Y
Sbjct: 89 --QYDEYECIKRGITFSVPMRITLRFVVWKVQEVSFKEVKYVVDEGTLE------RSVKY 140
Query: 157 GKDEAELARLGECPLDPG-GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXX 215
K++ E++ +G+ P+ G FII G E+V++ Q S V D+DK ++
Sbjct: 141 MKEQ-EVS-IGDLPMMTSYGTFIINGIERVIVSQMHRSPG-VFFDSDKGKTYSSGKLIYS 197
Query: 216 XXXX--XXXXIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
+ E K +Y +++ +K+P+ ++KA+GM ++
Sbjct: 198 ARIIPYRGSWLDFEFDIKDIIYFRIDK-KRKLPVTYLLKALGMSNN 242
Score = 64 (27.6 bits), Expect = 1.8e-25, Sum P(5) = 1.8e-25
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 661 DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
D +I++ P I+ V A LIP+ +N + R M +QA+
Sbjct: 674 DVNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
Score = 51 (23.0 bits), Expect = 1.9e-21, Sum P(5) = 1.9e-21
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 76 PSIFLRFKDVRIGQPSMTVDG-VSEKLNPHMC-RLSDMTYA 114
P + RFK VR+ M VDG V K N + R++ YA
Sbjct: 264 PFVVDRFKGVRLSYDLMDVDGNVLIKANTRITLRIAKKLYA 304
Score = 39 (18.8 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
T Q GK G F ++ Y Y + +LT ++ ++VG
Sbjct: 1287 TQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVG 1332
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 291 (107.5 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 55/84 (65%), Positives = 65/84 (77%)
Query: 924 PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 983
PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG V+
Sbjct: 2 PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKD 56
Query: 984 ISETLVKHGFSYNGKDMIYSGITG 1007
+ E LV+HG++Y GKD + SGITG
Sbjct: 57 VCEDLVRHGYNYLGKDYVTSGITG 80
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 156 (60.0 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
+K I R+ ++GDK + RHG KG+ TIV + D P+ G D+ +NP G PSRM +
Sbjct: 1079 VKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNI 1138
Query: 948 GKMIELLGGKAGVSCG 963
G+++E G G+ G
Sbjct: 1139 GQILESHLGLVGLRLG 1154
Score = 103 (41.3 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSL-DRGFGRCIVVKKYTAINQKYANSTSDRI 798
+L G+NA +A M ++GY+ EDAIV+++ + + F + +K I + + I
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEK--EIEARELKDGIEEI 861
Query: 799 LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 849
+ D E + LD+ G+A G IKP + + K SP +G + PT
Sbjct: 862 TK-DIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP---KGEV-KPT 907
Score = 101 (40.6 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 41/169 (24%), Positives = 78/169 (46%)
Query: 348 MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
+++ K +DD+D++GN+R+ G+L++ +L + +++QK + S
Sbjct: 445 LIKVKNGKGHIDDRDHLGNRRIRSIGELLA---NELHLGL-AKMQKAI----RDKFTSLN 496
Query: 408 FDLSQFIVRDSITVGLERT----LSTGNFDVKRFKMHRKGMTQVL--ARLSFIGTLGHMT 461
DL + + D I + T TG + +F +++V RLS +G G +
Sbjct: 497 ADLDKVMPYDLINPKMITTTIIEFFTGG-QLSQFMDQTNPLSEVTHKRRLSALGE-GGLV 554
Query: 462 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
+ FE R + + +G +CP +TPEG+ GL+ L+ V
Sbjct: 555 KERAGFEV-------RDVHATHYGRICPVETPEGQNIGLINTLSTYAKV 596
Score = 69 (29.3 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 34/156 (21%), Positives = 66/156 (42%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVN-----TGIRKIVRANDRIVSGIDPS--IFLR 81
VD F + + +++ L++ SF+YF+N +GI K+ ++ I DP + L
Sbjct: 15 VD-FSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKS---IFPIHDPQNRLSLE 70
Query: 82 FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT-------TM 134
+ IG+P T+ C +TY+ + + I EKT +
Sbjct: 71 YVSSEIGKPKYTI---------RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDI 121
Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
++ ++ I IP+M ++ G + + +L P
Sbjct: 122 KEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSP 157
Score = 61 (26.5 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 18/89 (20%), Positives = 42/89 (47%)
Query: 177 FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAXXXXXXXXXXXXXXIQME---KGKMYL 233
FII G E+V++ Q S + + + N + E K +Y+
Sbjct: 140 FIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYV 199
Query: 234 LLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
+N+ +K+P+ ++ +A+G + Q+++++
Sbjct: 200 RINKR-RKVPVTMLFRALGYKK-QDIIKL 226
Score = 55 (24.4 bits), Expect = 1.1e-22, Sum P(6) = 1.1e-22
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 639 EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
E+++ ++ ++A E + I++ ++GV A LIP+ H+ + R M
Sbjct: 647 EFVEARQDGETILARRE-----EVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQ 701
Query: 699 KQAM 702
+QA+
Sbjct: 702 RQAV 705
Score = 45 (20.9 bits), Expect = 5.7e-17, Sum P(6) = 5.7e-17
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 755 SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
+G I D M++ L G I + N + A S+RI+R D
Sbjct: 790 AGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIRED 837
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 151 (58.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 344 MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
M+RR++ A + +DD+DY GNKRLEL+GQL+SLLFEDLFK SE++K D
Sbjct: 1 MVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIAD 52
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 171 (65.3 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 55/192 (28%), Positives = 91/192 (47%)
Query: 880 SDKNGDLCIKF--LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 937
++KN ++ +KF I + +LGDK +RHG KG+ I + D P+ I PD+ ++
Sbjct: 746 TEKN-NIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFIS 804
Query: 938 PHGFPSRMTVGKMIELLGGKAGVSCG-RF------------HYGSAFGEPSGHADTVESI 984
PSR+ +G++ E + G + R+ +Y F + + +I
Sbjct: 805 AISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNFNI 864
Query: 985 SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1044
+ K ++YN K + + TG + I + IYY KL HM+ DK R G LT
Sbjct: 865 NS---KMSYNYN-KYYLKNPFTGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELT 920
Query: 1045 RQPTEGRARNGG 1056
+QP +G + GG
Sbjct: 921 QQPIKGNTKQGG 932
Score = 136 (52.9 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 54/227 (23%), Positives = 103/227 (45%)
Query: 744 GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
G N V SY GY+ EDAI++++ L + + Y I+ N+ + I +
Sbjct: 600 GNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYE-ISLNIINNIPE-ICSINL 657
Query: 804 TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 863
+ + ++ LD G+ G I N++ I+K + + S + + S + +
Sbjct: 658 SKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLFGSKLRIF 717
Query: 864 KGPDGETCVVD-----RVALC-------SDKNGDLCIKF--LIRHTRRPELGDKFSSRHG 909
K + + D ++ + ++KN ++ +KF I + +LGDK +RHG
Sbjct: 718 KNKPIISTIHDIGRVIKIEILPNHLYNKTEKN-NIYLKFRIYIGIQKYLQLGDKICNRHG 776
Query: 910 QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 956
KG+ I + D P+ I PD+ ++ PSR+ +G++ E + G
Sbjct: 777 HKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYG 823
Score = 60 (26.2 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 662 TTHIEIEPFT-ILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
T +I PF +L I LIP+ H+N S RN M Q
Sbjct: 459 TQNIIYIPFNYLLSFIENLIPFIHYNDSIRNLMSIKMHTQ 498
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNL 504
R L + G + +T EG CGLV L
Sbjct: 360 RELPRNILGYISLINTNEGLTCGLVNYL 387
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1058 1044 0.00082 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 614 (65 KB)
Total size of DFA: 441 KB (2209 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 82.02u 0.12s 82.14t Elapsed: 00:00:04
Total cpu time: 82.10u 0.12s 82.22t Elapsed: 00:00:04
Start: Mon May 20 23:52:08 2013 End: Mon May 20 23:52:12 2013