BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001532
         (1058 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
            pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
          Length = 1165

 Score = 1253 bits (3241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1053 (57%), Positives = 787/1053 (74%), Gaps = 28/1053 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KLA PV ++ DK+QLLP FLKV+GLVKQHLDS+NYFV+  ++KIV+AN+++ S ++P  
Sbjct: 38   KKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF 97

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G P  T  D +   ++PH CRL D+TY A I V+IEY +G    K  + + 
Sbjct: 98   YLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRG----KQVVRRR 153

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V IGR+P+MLRS +CVL GK+E E+A L ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+
Sbjct: 154  NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRI 213

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ + KKG   ASVTSST   KSKT +  + GK+YL  N     IPI+VV+KAMG++SD
Sbjct: 214  IVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSD 273

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS----PPNDR 311
            QE+ ++V G +  Y  L  PSIEECA L+IYT ++ALEY+  +VK +        PP++ 
Sbjct: 274  QEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEE 333

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  +L  V LA++ V N  FRPK  Y+ +M RR++ AM++   +DD+DYVGNKRLEL
Sbjct: 334  ---ALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLEL 390

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLST 429
            +GQL++LLFEDLFK   S+++  +D +L KP R+  FD  +Q  V  D IT G+ R LST
Sbjct: 391  AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALST 450

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRFKM R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPR+LQ SQ+GMLC 
Sbjct: 451  GNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCT 510

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TTDEEE P+I L Y  G+ED+ ++SG ELH+  ++LV  
Sbjct: 511  SDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYL 570

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ILG  R P  F    RKLRR+GKI  F+ +F+N  QR V+I++DGGR+CRPL+I   
Sbjct: 571  NGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQN 630

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G+ +++  H++ L +G   F+DFL++GL+EY+DVNEEN++LI++YE D TPDTTH+EIEP
Sbjct: 631  GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEP 690

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++ 
Sbjct: 691  FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVK 750

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+GYDKL AGQNATVA+MSYSGYDIEDA+V+NKSS+DRGFGRC V  K++ I +K
Sbjct: 751  TKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRK 810

Query: 790  YANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGS-- 844
            Y N T DRI  P R   TG    +  +++DDGLA  G  ++P  +Y+NK++P     +  
Sbjct: 811  YPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSI 870

Query: 845  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 904
             +  T   +S Y++   TYK P  E   +D+V L +  +    IK L+R TRRPELGDKF
Sbjct: 871  TLGHTQTVESGYKATPMTYKAP--EPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKF 928

Query: 905  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
            SSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKMIELL GK GV  G 
Sbjct: 929  SSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGT 988

Query: 965  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1024
              YG+ FG        VE  S  LV+HG++Y+GKDM+ SGITG  L+AYIFMGPIYYQKL
Sbjct: 989  LEYGTCFG-----GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKL 1043

Query: 1025 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            KHMV+DKMHAR  GPR +LTRQPTEGR+R+GG 
Sbjct: 1044 KHMVMDKMHARARGPRAVLTRQPTEGRSRDGGL 1076


>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
            GN=POLR3B PE=1 SV=2
          Length = 1133

 Score = 1219 bits (3154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1045 (57%), Positives = 762/1045 (72%), Gaps = 19/1045 (1%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
            D+++ P     T     R +ILD DG+ +PGE ++   V +NK  P  T+  +       
Sbjct: 788  DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847

Query: 853  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
              +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848  QPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905

Query: 913  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
            VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG
Sbjct: 906  VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965

Query: 973  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
                    V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966  -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020

Query: 1033 HARGSGPRVMLTRQPTEGRARNGGF 1057
            HAR  GPR +LTRQPTEGR+R+GG 
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGGL 1045


>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
            GN=Polr3b PE=2 SV=2
          Length = 1133

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1045 (57%), Positives = 760/1045 (72%), Gaps = 19/1045 (1%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
            D+++ P     T     R +ILD DG+ +PGE ++   V +NK  P  T+  +       
Sbjct: 788  DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847

Query: 853  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
              +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848  QPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905

Query: 913  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
            VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG
Sbjct: 906  VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965

Query: 973  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1032
                    V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKM
Sbjct: 966  -----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM 1020

Query: 1033 HARGSGPRVMLTRQPTEGRARNGGF 1057
            HAR  GPR +LTRQPTEGR+R+GG 
Sbjct: 1021 HARARGPRAVLTRQPTEGRSRDGGL 1045


>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
          Length = 1149

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1046 (56%), Positives = 758/1046 (72%), Gaps = 24/1046 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI++AN  I+S +DP  
Sbjct: 32   KKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEF 91

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IEY +G    +  +   
Sbjct: 92   YLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 145

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 146  DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 205

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++IPI +V+KA G+ SD
Sbjct: 206  IVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSD 265

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK          +EG  
Sbjct: 266  LEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEG-- 323

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL
Sbjct: 324  IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQL 383

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ 
Sbjct: 384  ISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 443

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 444  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 503

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH   ++ V  NG +
Sbjct: 504  EGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHL--NYGVYLNGTL 561

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGGR+CRPL+I   G SR
Sbjct: 562  IGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSR 621

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D  P  TH+EIEPFTIL
Sbjct: 622  VKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTIL 681

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+ YPQ+P++ T+TI
Sbjct: 682  GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTI 741

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + ++YAN 
Sbjct: 742  ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANH 801

Query: 794  TSDRI--LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 851
            T D I  +R D  G    + Q L  DGL   G  ++   +YINK  P  +  +       
Sbjct: 802  TQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVN 861

Query: 852  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 911
              ++YR A   Y+GP  E   +D+V +    N    IK L+R  RRPELGDKFSSRHGQK
Sbjct: 862  VQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQK 919

Query: 912  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
            GVCG IV+QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  G   YG+ F
Sbjct: 920  GVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF 979

Query: 972  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1031
            G        +E +S+ LV  GF+Y+GKDM+YSGITG  LQAYIF GPIYYQKLKHMVLDK
Sbjct: 980  G-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1034

Query: 1032 MHARGSGPRVMLTRQPTEGRARNGGF 1057
            MHAR  GPR +LTRQPTEGR+R+GG 
Sbjct: 1035 MHARARGPRAVLTRQPTEGRSRDGGL 1060


>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
            melanogaster GN=RpIII128 PE=2 SV=2
          Length = 1137

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1066 (53%), Positives = 755/1066 (70%), Gaps = 29/1066 (2%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
            +KIV+AN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+API 
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF+
Sbjct: 123  VDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 178

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            ++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N  
Sbjct: 179  VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 237

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K
Sbjct: 238  TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297

Query: 299  --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K 
Sbjct: 298  LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
              DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +  
Sbjct: 357  LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 415

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 416  AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 475

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG
Sbjct: 476  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 535

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +D
Sbjct: 536  NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 595

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 596  GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 655

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                 TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL
Sbjct: 656  QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 715

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            +Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 716  MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 775

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYI 833
            C+V K      ++YAN T DRI+ P +   T     +  +LD DG+ APGE ++   + I
Sbjct: 776  CLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMI 835

Query: 834  NKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 891
            NKE P  T    M+P  GQ+    Y +   +YKGP  E   ++RV + ++   D  IK L
Sbjct: 836  NKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKIL 890

Query: 892  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
            +R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK +
Sbjct: 891  LRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTL 950

Query: 952  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1011
            ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSGITG PL+
Sbjct: 951  ELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLE 1005

Query: 1012 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GG 
Sbjct: 1006 AYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGL 1051


>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
            discoideum GN=polr3b PE=3 SV=1
          Length = 1608

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/560 (60%), Positives = 423/560 (75%), Gaps = 7/560 (1%)

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKN ALM+HVTTD+ EGPL+ L Y LGV+D+ L++GEEL++ N++LV+ NG I+G H
Sbjct: 970  CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
              P  F   +RK+RRAG+I EFVS+  N+ Q+ + +A DGGR+CRP++I D    R+ + 
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H+++L DG+R+FDDF+REG+IEYLDVNEEN++ +A  E    P TTH+EIEPFT+LG +A
Sbjct: 1090 HIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTMLGCVA 1149

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
            GLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLV+ QRPL  TRTI+L+ 
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + KL AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV+KK     +K+ N TSDR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269

Query: 798  ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857
            I  P        +  +LD DG+A PGE+ +   + +NK SPL T  +  +P    DS Y+
Sbjct: 1270 IFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYK 1329

Query: 858  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 917
            S+   YK  +     +D+V L S  +  L IK L+R TRRPELGDKFSSRHGQKGVCG I
Sbjct: 1330 SSYMGYKYDN--PAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGII 1387

Query: 918  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977
            V+QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKAGV  G+F +G+ FG     
Sbjct: 1388 VKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFG----- 1442

Query: 978  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037
             D VE+IS+ L+  GFSY GKD + SG+TG PL  +IF GPI+YQKLKHMV+DKMHAR  
Sbjct: 1443 GDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARAR 1502

Query: 1038 GPRVMLTRQPTEGRARNGGF 1057
            GP V LTRQPTEGRAR GG 
Sbjct: 1503 GPTVTLTRQPTEGRARGGGL 1522



 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/490 (51%), Positives = 345/490 (70%), Gaps = 8/490 (1%)

Query: 13  EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
           ++L +  KL   +K V +K++L+P F+K RGLVKQH+DSFN+F+N  ++KIV+AN+R+ +
Sbjct: 21  DELYNISKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA 80

Query: 73  GIDPSIFLRFKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
             DPS F+RF D+ +G P+ T D + S +L P  CRL DMTY+API VNIEY +     K
Sbjct: 81  ENDPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRN----K 136

Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
             + K DV IG IPIMLRS  CVL  K   ++A LGECP+DPGGYFI++G EKV+L  EQ
Sbjct: 137 QIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQ 196

Query: 192 LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
           LSKNR+II+ D KG  +ASVTSST   KS+T + ++  K+YL  N F + IP+ +V+K M
Sbjct: 197 LSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGM 256

Query: 252 GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG-SPP 308
           G+E+DQE+ Q+VG D  +   + PS+EEC    ++T  +AL+YL  ++K  R  +G    
Sbjct: 257 GVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNK 316

Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
             +   A  IL  V L +VPV   NFR K  Y+++M+RR++ A  +K  +DDKDY GNKR
Sbjct: 317 KTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKR 376

Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
           +ELSGQL+SLLFED FK   SE++K+VD  ++K +R+   DL + I  D+IT G    +S
Sbjct: 377 IELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAIS 436

Query: 429 TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
           +G +++KRF+M R G++QVL+RLS+I  +G MTR+  QFEK+RKV+GPR+LQPSQWGMLC
Sbjct: 437 SGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLC 496

Query: 489 PCDTPEGEAC 498
           P DTPEGEAC
Sbjct: 497 PSDTPEGEAC 506


>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
            PE=3 SV=1
          Length = 1122

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/1050 (38%), Positives = 617/1050 (58%), Gaps = 57/1050 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N F++ G+++++     +   I P   ++F  VR+G+
Sbjct: 15   DLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDI-PDFEVKFGKVRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+API +  I  V G      + E  +V IG +PIM
Sbjct: 74   PEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNG-----VSQEAVEVRIGELPIM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFI+ G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 129  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNR 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            I A   S     ++   ++  K G +Y+ L    + +  + VM+A+G+ SD+E+V+ V  
Sbjct: 189  IIAKCFSYRHGYRALITVERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSD 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  D+ TQE+AL+Y+ GK+  S  G P   R  RA +I+ +  L 
Sbjct: 249  DPRIQHVLFDNLEDAS--DVTTQEEALDYI-GKL--SLPGQPKEYRLRRAQNIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   + + K +Y+ +M  R++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG++        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R ++I TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM+ +TT   E  +      LGV  +E    E   NP+ + +  NG+++G     
Sbjct: 479  VKNLALMSQITTGVPEEEVREYLERLGVVPIE----ERRPNPDLWRLYLNGVLVGTVEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            + F + +R  RR+GKI + ++V  + +E  + +Y+ SD GRV RPL+I + G  ++   H
Sbjct: 535  EGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G  ++ D ++ G+IEYLD  EE NAL+A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VEAIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN  PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY+GY++EDAI+MNK+S++RG  R    + Y A  ++Y    +DR 
Sbjct: 715  EERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774

Query: 799  LRPDRTGPG--AER-MQILDDDGLAAPGEIIKPNDVYINKESP---LETR----GSIMSP 848
              PD T  G   ER  + LD+DG+  P   +   DV + + SP   LE +    G I+  
Sbjct: 775  EIPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQE 834

Query: 849  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 908
              +T    R +         ET VVD+V +    +G   +K   R  R PE GDKF+SRH
Sbjct: 835  RRETSLTVRPS---------ETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRH 885

Query: 909  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 968
            GQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR   G
Sbjct: 886  GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDG 945

Query: 969  SAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1027
            +AF GEP       E + + L + GF ++G++++Y GITG  L+A +F+G IYYQ+L HM
Sbjct: 946  TAFIGEPE------EKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHM 999

Query: 1028 VLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            V DKMHAR  GP  +LT+QPTEGRAR GG 
Sbjct: 1000 VADKMHARSRGPVQVLTKQPTEGRAREGGL 1029


>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
            discoideum GN=polr2b PE=3 SV=1
          Length = 1170

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1085 (36%), Positives = 612/1085 (56%), Gaps = 84/1085 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------------RANDRIVSGID 75
            D + ++  + + +GLV+Q LDSF+ F+   +++I+                   +VS   
Sbjct: 22   DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNV 81

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
             +  ++F  + + +P+  +DGVS+++ P+  R+ ++TY+AP+ V+I    + GS ++   
Sbjct: 82   STFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDE 141

Query: 134  MEKNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
               ++V+    IG++PIMLRS  C+L   D+ +L  +GEC  D GGYFII G+EKVL+ Q
Sbjct: 142  RRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQ 201

Query: 190  EQLSKNRVII---DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----- 241
            E+++ N V +       K +  A + S  ET    T        MYL +     K     
Sbjct: 202  EKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPT------STMYLKMLHNTNKGPVGI 255

Query: 242  ----------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQ 288
                      +P+++V +A+G  +D+++++ +    +D +   L+ PS+EE  +  I +Q
Sbjct: 256  KATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEE--SFVIQSQ 313

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
            E AL+YL GK + ST G+    RE R   A  +L+   L +V V       K FY   + 
Sbjct: 314  EVALDYL-GK-RGSTMGT----REQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIT 367

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+  NKRL+L+G L+  LF  LFK +  +V+  +   + K    
Sbjct: 368  HRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK---D 424

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
              F  S  +   +IT GL+ +L+TGN+   +    + G+ QVL RL+F  TL H+ R++ 
Sbjct: 425  KEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNT 484

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  + WG++CP +TPEG+ACGLVKNLA+M++++      P++     
Sbjct: 485  PIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEE 544

Query: 526  LGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
               E+LE +S  +L +  S   IF NG+ +G H +P      +R LRR G +   VSV  
Sbjct: 545  WTTENLEEIS--DLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVR 602

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDV 643
            + +++ + + +D GR CRPL +      +IK+ H+ +L++     + D L EG++EY+D 
Sbjct: 603  DIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDA 662

Query: 644  NEENNALIALYEGDATP--------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
             EE   LIA+   D  P          TH EI P  ILG+   +IP+P HNQSPRNTYQ 
Sbjct: 663  EEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQA 722

Query: 696  AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            AMGKQAMG    N   RMD++ ++L YPQ+PL+TTR++E + + +L AGQN  VA+  YS
Sbjct: 723  AMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYS 782

Query: 756  GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER---MQ 812
            GY+ ED++++N+S++DRG  R +  + Y    +K  +   +   +P+R      R    +
Sbjct: 783  GYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYE 842

Query: 813  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
             +DDDGL APG  +  +D+ I K +PL      + P  +  ++  S+         ET +
Sbjct: 843  KIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRS---SETGI 899

Query: 873  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
            VD+V L +   G    K  +R  R P++GDKFSSRHGQKG CG   +QED PF+  GI P
Sbjct: 900  VDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVP 959

Query: 933  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 992
            D+I+NPH  PSRMT+G++IE L GK   S G     + F +      TVE+IS+ L K G
Sbjct: 960  DIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDV-----TVEAISQALHKIG 1014

Query: 993  FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1052
            +   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+
Sbjct: 1015 YQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRS 1074

Query: 1053 RNGGF 1057
            R+GG 
Sbjct: 1075 RDGGL 1079


>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
            GN=rpb-2 PE=2 SV=2
          Length = 1193

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1077 (35%), Positives = 607/1077 (56%), Gaps = 71/1077 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR---------ANDRIVSGID-PSIF-L 80
            + ++  +   +GLV+Q LDSF+ FV   +++IV           N  + + ++ P+ F L
Sbjct: 34   WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            +F  + + +P+    DG    + P+  RL ++TYA+P+ V+I  V       T    + V
Sbjct: 94   KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKV 153

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             +G++P+MLRS  C+L    + +L  L ECPLDPGGYF+I G+EKVL+ QE+++ N V +
Sbjct: 154  FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 213

Query: 200  DTDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKI 242
             + K G         + + +S+    +  V  + +G           ++  +L    ++I
Sbjct: 214  FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI 273

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            PIM+V +A+G  SD++++  +     DP    ++ PS++E     I  Q  AL ++  + 
Sbjct: 274  PIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR- 330

Query: 300  KRSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
                 G+ P   RE R   A  IL+   L +V V  +    K F++  M+ R++ A L +
Sbjct: 331  -----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
              +DD+D++GNKRL+L+G L++ LF  LF+ ++ E++ T    ++K   +  F L   + 
Sbjct: 386  RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK---NDDFALDVCVK 442

Query: 416  RDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
              +IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R +    +  K++
Sbjct: 443  TSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLA 502

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++       +E+LE +
Sbjct: 503  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEV 562

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYI 593
            S   + +     V  NG  +G HR P      ++KLRR   I    VS+  + + R + I
Sbjct: 563  SPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRI 620

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLDGV-----RSFDDFLREGLIEYLDVNEENN 648
             +D GRVCRPL+I +     +K+ H+ +L +        ++ D +  G++E +D  EE  
Sbjct: 621  YTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEET 680

Query: 649  ALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            ++IA+   D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 681  SMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 740

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SYSGY+ ED++
Sbjct: 741  VYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSV 800

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDGLA 820
            +MN S++DRG  R +  + Y        N+  + I +P R      R  +   LD+DG+ 
Sbjct: 801  IMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGII 860

Query: 821  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 880
            +PG  +  +DV I K   L      +  +G+   + R A    +    ET +VD+V L  
Sbjct: 861  SPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK-RDASTFLRS--SETGIVDQVMLSL 917

Query: 881  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
            + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +QED PF+  G+ PD+I+NPH 
Sbjct: 918  NSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHA 977

Query: 941  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1000
             PSRMT+G +IE L GK   + G     + F +       V+ IS  L ++G+   G ++
Sbjct: 978  VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----NVQKISGLLCEYGYHLRGNEV 1033

Query: 1001 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            +Y+G TG  L   IF GP YYQ+LKHMV DK+H+R  GP  M+ RQP EGRAR+GG 
Sbjct: 1034 MYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGL 1090


>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
            GN=RPB2 PE=2 SV=1
          Length = 1191

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1088 (38%), Positives = 600/1088 (55%), Gaps = 83/1088 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 84   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECPLD GGYFII G+EKVL+ QE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 204  KMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA--FVIQNQQVA 321

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 322  LDYI-GK-RGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKD 432

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 553  TENFEEISPAVI--PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIR 610

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDV 643
             + + I +D GR  RPL I +K    IK+  ++ L          + D + +G IEY+D 
Sbjct: 611  LKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDT 670

Query: 644  NEENNALIA----------LYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I+          L  GDA  DT TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 671  EEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 730

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 731  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 790

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-- 810
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR      R  
Sbjct: 791  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHG 850

Query: 811  -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
                LDDDGLA PG  +   DV I K +P+    S     GQ  SRY     +      E
Sbjct: 851  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDDAQGQA-SRYTRKDHSTSLRHSE 905

Query: 870  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
            T +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  G
Sbjct: 906  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 965

Query: 930  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
            I PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV++IS+ L 
Sbjct: 966  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALH 1020

Query: 990  KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1049
            K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQP E
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1080

Query: 1050 GRARNGGF 1057
            GR+R+GG 
Sbjct: 1081 GRSRDGGL 1088


>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
            PE=2 SV=2
          Length = 1174

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1104 (36%), Positives = 612/1104 (55%), Gaps = 92/1104 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQI---LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 853
              +P R      R  I   LDDDGL APG  +  +DV I K   L E    + S    T+
Sbjct: 829  FEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TN 884

Query: 854  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
             RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG 
Sbjct: 885  RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944

Query: 914  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
            CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   
Sbjct: 945  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--T 1000

Query: 974  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1033
            P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H
Sbjct: 1001 PFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 1060

Query: 1034 ARGSGPRVMLTRQPTEGRARNGGF 1057
            +R  GP  +L RQP EGR+R+GG 
Sbjct: 1061 SRARGPIQILNRQPMEGRSRDGGL 1084


>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
            PE=1 SV=1
          Length = 1174

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/1104 (36%), Positives = 612/1104 (55%), Gaps = 92/1104 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQI---LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 853
              +P R      R  I   LDDDGL APG  +  +DV I K   L E    + S    T+
Sbjct: 829  FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TN 884

Query: 854  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
             RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG 
Sbjct: 885  RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944

Query: 914  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
            CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   
Sbjct: 945  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--T 1000

Query: 974  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1033
            P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H
Sbjct: 1001 PFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 1060

Query: 1034 ARGSGPRVMLTRQPTEGRARNGGF 1057
            +R  GP  +L RQP EGR+R+GG 
Sbjct: 1061 SRARGPIQILNRQPMEGRSRDGGL 1084


>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
            melanogaster GN=RpII140 PE=2 SV=2
          Length = 1176

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1077 (36%), Positives = 603/1077 (55%), Gaps = 81/1077 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR---TGPGAERMQILDDDGLA 820
            ++N S+++RGF R +  + Y     K      +   +P R    G        LDDDG+ 
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGII 856

Query: 821  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 880
            APG  +  +DV I K   L      +    +  S+ R A    +  + ET +VD+V L  
Sbjct: 857  APGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIVDQVMLTL 913

Query: 881  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
            +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD+I+NPH 
Sbjct: 914  NSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973

Query: 941  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1000
             PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G+   G ++
Sbjct: 974  IPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYGYHLRGNEV 1029

Query: 1001 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            +Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GG 
Sbjct: 1030 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1086


>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
            (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
            NCIMB 11770) GN=rpoB PE=3 SV=2
          Length = 1126

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/1049 (36%), Positives = 595/1049 (56%), Gaps = 52/1049 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            ++ +   F K RGLV+QHLDSFN F+   +++++     IV+ + P + ++   +R  +P
Sbjct: 7    RWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEV-PGLKIKLGKIRYEKP 65

Query: 91   SM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            S+  T  G   ++ P   RL ++TY++PI +++  V+ +       E  ++ IG +PIML
Sbjct: 66   SIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENN----IEGEPIEIYIGDLPIML 121

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG-NI 207
            +S           +L  +GE P DPGGYFI+ G+EKV++ QE L+ NRV++D  K G NI
Sbjct: 122  KSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNI 181

Query: 208  N--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A VTSS    + + +I+ ++   + +       +IP  ++M+A+G  +D+++V  V 
Sbjct: 182  THVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVS 241

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP+    LLPS+E+ ++  I + E+AL+++  +V     G    +R  +A  ++   FL
Sbjct: 242  LDPQIQNELLPSLEQASS--ITSAEEALDFIGNRV---AIGQKRENRIQKAEQVIDKYFL 296

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++     + + K +Y+A  + +++E  L +   DDKD+  NKR+ L+G L + LF   F
Sbjct: 297  PHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAF 356

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
            K  + ++   ++       R  R  L+  +  D IT  +   L+TGN+        R G+
Sbjct: 357  KAFVKDLVYQLE---KSKVRGRRLSLTALVRADIITERIRHALATGNW-----VGGRTGV 408

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLVKNL
Sbjct: 409  SQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNL 468

Query: 505  ALMTHVTTDEEEGPLISLCYCLGV---EDLELLSGEELHNPNSFL----VIFNGLILGKH 557
            AL+  V+    E  +  + Y LGV   ED+     E+  +   ++    V  NG +LG +
Sbjct: 469  ALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYY 528

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSV------FVNEKQRCVYIASDGGRVCRPLVIADKGI 611
               K  A  +R+ RR GK+ + V+V      ++NE    V+I  D GRV RPL+I + G 
Sbjct: 529  EDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNE----VHINCDAGRVRRPLIIVNNGT 584

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +    +K+L +G  +FDD +++G IE++D  EE NA +AL   D TPD TH+EI P  
Sbjct: 585  PLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSA 644

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG+IA +IPYP HNQSPRNTYQ AM KQ++G  A N   R D+  +LL YPQ PL+ TR
Sbjct: 645  ILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTR 704

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             + ++GY+   AG NA +A+MSY+GY++ED+I+MNKSS++RG  R    + Y+    KY 
Sbjct: 705  MLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYP 764

Query: 792  NSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 848
                D+I+ P+   +   G +  ++L+D+G+ +P   +K  DV I K SP          
Sbjct: 765  GGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKEL 824

Query: 849  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 908
            + +   R  S    +    GE  +VD V +     G+  +K  +R  R PE+GDKF++RH
Sbjct: 825  SPEQAKRDTSIVTRH----GENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRH 880

Query: 909  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 968
            GQKGV G ++ Q D P++ +GI PD+I+NPH  PSRMT+G+++E +GGK     G+    
Sbjct: 881  GQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVDA 940

Query: 969  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1028
            + F E       ++ + + ++K G   +  +++Y G TG  L++ I  G +YYQKL HMV
Sbjct: 941  TPFLE----TPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMV 996

Query: 1029 LDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
             DKMHAR  GP  +LTRQPTEGRAR GG 
Sbjct: 997  ADKMHARARGPVQILTRQPTEGRAREGGL 1025


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
            GN=RPB135 PE=2 SV=2
          Length = 1188

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1088 (37%), Positives = 598/1088 (54%), Gaps = 83/1088 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  +     S   ++M           G+     
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q  A
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V +  +    K +Y   ++ R++  
Sbjct: 323  LDYI-GK-RGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLC 380

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 381  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 434  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 494  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG+ +G HR P      +R+LRR   +   V V  + +
Sbjct: 554  TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
             + + I +D GR  RPL I D     IK+  +  L     + +D     + +G IEY+D 
Sbjct: 612  LKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671

Query: 644  NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D            T + TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 672  EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 732  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 791

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-- 810
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR      R  
Sbjct: 792  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHG 851

Query: 811  -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
                LDDDGLA PG  +   DV I K +P+    S     GQ+ SRY     +      E
Sbjct: 852  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHSISLRHSE 906

Query: 870  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
            T +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  G
Sbjct: 907  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 966

Query: 930  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 989
            + PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV++IS+ L 
Sbjct: 967  VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALH 1021

Query: 990  KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1049
            K G+   G + +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQP E
Sbjct: 1022 KCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1081

Query: 1050 GRARNGGF 1057
            GR+R+GG 
Sbjct: 1082 GRSRDGGL 1089


>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
            cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
          Length = 1141

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/1070 (35%), Positives = 598/1070 (55%), Gaps = 72/1070 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  +  I+    P+        I +RF 
Sbjct: 11   WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRIAVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R+ D+TYA+P+ +++   + + +E   ++K+    
Sbjct: 71   QIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDV--TKETLSELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVLYG  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
            +    +       A + S  E + ++ + + M+     G + + L    + +P+ V+ +A
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRA 248

Query: 251  MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +G  SD+E++  +    D     LL  SIEE     +  Q  AL+Y+ GK + +  G+P 
Sbjct: 249  LGFLSDKEIIDHILYEDDEEMFELLKESIEE--GTVVQDQNVALDYI-GK-RSAPIGTPQ 304

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  +L    L ++         K +++  +++R++   L +   DD+D+ G KR
Sbjct: 305  EKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKR 364

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            ++LSG L++ LF  LFK +  +  + +   +        F+++  +    IT G    L+
Sbjct: 365  MDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM+
Sbjct: 422  TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +++     GPL+      GVE LE +S  +L       V
Sbjct: 482  CPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFV 541

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG+ +G H  P      ++ LRR+ ++ + VS+  + +++ + + SD GR CRPL++ 
Sbjct: 542  --NGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVV 599

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----------EGD 657
                  I    +++L  G   +D+ +  G IE+LDV EE  ++IA+             D
Sbjct: 600  KDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSD 659

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             +   TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N L RMD+L 
Sbjct: 660  VSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLS 719

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
             +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+I+MN+S++DRG  R 
Sbjct: 720  NILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRS 779

Query: 778  IVVKKYT--------AINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPN 829
               + YT         +N+++   +   +LR             LDDDGL +PG  +  +
Sbjct: 780  FFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN-----YNKLDDDGLISPGTRVTGD 834

Query: 830  DVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 887
            DV I K +P+    R +  +P         + R+T      ET +VD V + ++K+G   
Sbjct: 835  DVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGYKF 887

Query: 888  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
             K  +R  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+NPH  PSRMT+
Sbjct: 888  SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTI 947

Query: 948  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1007
            G +IE L GK     G     + F        TV+ IS  L  +GF   G +++Y+G+TG
Sbjct: 948  GHLIECLLGKVSAMSGEEGDATPFS-----GVTVDGISSRLKSYGFQQRGLEVMYNGMTG 1002

Query: 1008 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
              L+A +F GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1003 RKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGL 1052


>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
            (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
            Y-1056) GN=RPB2 PE=3 SV=1
          Length = 1222

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1132 (34%), Positives = 607/1132 (53%), Gaps = 134/1132 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSFN F+N  I+ ++  +  ++             I    
Sbjct: 25   DSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRKY 84

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             + F  + + +PSMT  DGVS  + P   RL ++TYA+ + V I                
Sbjct: 85   EISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLK 144

Query: 122  -EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             E +Q    E    E+  + IGR+PIMLRS  C+L    E++L RL ECP D GGYFII 
Sbjct: 145  YEIIQ---EESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+Y   
Sbjct: 202  GSEKVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGRE 257

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI+++ +A+G+  D E+++ +     D +   +L P +EE  
Sbjct: 258  GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F++
Sbjct: 316  GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL 373

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDI 397
              M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q++V+ 
Sbjct: 374  GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE- 432

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGT 456
                   +  F+L   +   +IT GL+  L+TGN+  ++  M  R G++QVL R ++  T
Sbjct: 433  ------EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSST 486

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   + 
Sbjct: 487  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 546

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +RKLRR G I
Sbjct: 547  VPIITFLNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDI 604

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPL-VIADKGIS------RIKEHHMKELL------ 623
               VS+  + +++ + I +D GRV RPL V+AD   +      ++++ H+++L+      
Sbjct: 605  TAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQD 664

Query: 624  --------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------- 662
                    D   ++   L +G++EY+D  EE   LIA+ + D  P               
Sbjct: 665  IEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPA 724

Query: 663  ------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
                        TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N  
Sbjct: 725  RRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYN 784

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+
Sbjct: 785  VRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSI 844

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM-----QILDDDGLAAPGEI 825
            D G  R +  + Y    ++   S ++   +P RT     RM     + LDDDGL APG  
Sbjct: 845  DSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRT--NTLRMKHGTYEKLDDDGLIAPGVR 902

Query: 826  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 885
            +  +D+ I K +P+      +   GQ  + +     +      E  +VD+V + +++ G 
Sbjct: 903  VSGDDIIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGL 959

Query: 886  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 945
              +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  G+ PDLI+NPH  PSRM
Sbjct: 960  KFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRM 1019

Query: 946  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1005
            TV  +IE L  K     G     S F +      TV+ IS+ L +HG+   G +++Y+G 
Sbjct: 1020 TVAHLIECLLSKVAALSGNEGDASPFTDI-----TVDGISKLLREHGYQSRGFEVMYNGH 1074

Query: 1006 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1126


>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
            pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
          Length = 1210

 Score =  634 bits (1634), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 399/1127 (35%), Positives = 607/1127 (53%), Gaps = 124/1127 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F +   L +Q L SF+ FV   +++IV  +  +        +G    +  R 
Sbjct: 16   DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY 75

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------V 124
               F  + + +P+MT  DG +  + P   RL ++TY++P+ V++                
Sbjct: 76   EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135

Query: 125  QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
            +    E+   E + V IG+IPIMLRS  C+L G  ++EL  L ECP D GGYFII G+EK
Sbjct: 136  EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195

Query: 185  VLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGK----- 230
            V++ QE+ + N  I+   KK           I +++   +  + S  +  M +       
Sbjct: 196  VIIAQERSAAN--IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQ 253

Query: 231  -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIY 286
             +   L      IPI++V +A+G+  D+++++ +  DP   +   ++ P IEE     I 
Sbjct: 254  TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA--FVIQ 311

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
             ++ AL+Y+ GK + ST G     R   A  IL+   L ++         K F++  M+ 
Sbjct: 312  DKDIALDYI-GK-RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIH 369

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            RM+   L +   DD+D+ G KRL+L+G L++ LF  LF+ M  +V K     + K   ++
Sbjct: 370  RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYK----YMQKCVETN 425

Query: 407  R-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            R F+L+  +  + IT GL  +L+TGN+ D KR  ++R G++QVL R +F  TL H+ R +
Sbjct: 426  REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTN 485

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM++V+      P+I    
Sbjct: 486  TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLE 545

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              G+E LE  +     +PN+  V  NG+ LG HR P    + +R LRR   I   VS+  
Sbjct: 546  EWGLETLEDYNPSA--SPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603

Query: 585  NEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD------- 630
            + +++ + + +D GR+CRPL I D       +G   I++ H+++L++    +D       
Sbjct: 604  DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663

Query: 631  ---DFLREGLIEYLDVNEENNALIAL--------------YEGDATPD------------ 661
                 +  GLIEYLD  EE   +IA+              YE     D            
Sbjct: 664  GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723

Query: 662  ---TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
                TH EI P  ILG++A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  
Sbjct: 724  VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMAN 783

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN++S+DRG  R I
Sbjct: 784  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSI 843

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAPGEIIKPNDVYI 833
              + YT   +K   +  +   RP R+     RM+      L+DDGL APG  +   D+ I
Sbjct: 844  FYRTYTDQEKKIGMTVMEEFERPVRS--TTLRMKHGTYDKLEDDGLIAPGTRVSGEDIII 901

Query: 834  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDLCIKFL 891
             K +P+      +    Q       A++    P    E+ +VD+V + +++ G   +K  
Sbjct: 902  GKTAPIPLDHEELGQRTQL-----HAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVR 956

Query: 892  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
            +R TR P++GDKF+SRHGQKG  G   + ED PFS +GI PD+I+NPH  PSRMTV  ++
Sbjct: 957  MRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLV 1016

Query: 952  ELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPL 1010
            E    K     G F      G+ +   D TVE++S+ L  HGF   G +++Y G TG  L
Sbjct: 1017 ECQLSKVSALSG-FE-----GDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKL 1070

Query: 1011 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
             A +F+GP YYQ+LKH+V DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1071 VAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGL 1117


>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
          Length = 1224

 Score =  633 bits (1632), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 398/1135 (35%), Positives = 608/1135 (53%), Gaps = 127/1135 (11%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++          
Sbjct: 22   SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++       
Sbjct: 81   SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140

Query: 123  --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                    Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 141  DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 201  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 256

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 257  KLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 316

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 317  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LFK +  ++    
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 433  QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 485

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 486  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 545

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 546  SVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 603

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +L+ 
Sbjct: 604  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMA 663

Query: 624  ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
                D    F+D         L EGL+EY+D  EE + LIA+   D  P           
Sbjct: 664  TEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDV 723

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 724  DPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 784  NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAP 822
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+      LDDDGL AP
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDKLDDDGLIAP 901

Query: 823  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 882
            G  +   DV I K +P+      +   GQ  + +     +      E  +VD+V + +++
Sbjct: 902  GVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQ 958

Query: 883  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 942
            +G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+NPH  P
Sbjct: 959  DGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1018

Query: 943  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1002
            SRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G +++Y
Sbjct: 1019 SRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGFEVMY 1073

Query: 1003 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            +G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1074 NGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1128


>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
            (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
            Y-65) GN=RPB2 PE=3 SV=1
          Length = 1223

 Score =  627 bits (1616), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 395/1135 (34%), Positives = 608/1135 (53%), Gaps = 128/1135 (11%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 21   API-TAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------- 121
              I     + F  + + +P +   DGV+  L P   RL ++TY++ + V++         
Sbjct: 80   DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVD 139

Query: 122  ------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                   Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D GG
Sbjct: 140  VPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGG 199

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 200  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 255

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 256  LYGRESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 315

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 316  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 371

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q
Sbjct: 372  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQ 431

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
            +TV+        ++ F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R 
Sbjct: 432  RTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 484

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 485  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 544

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R LR
Sbjct: 545  VGADPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLR 602

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA--DKGISR----IKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I   D+ + R    +++ H+ +L+  
Sbjct: 603  RKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMAT 662

Query: 624  ------DGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
                   G    +D+     L EGL+EY+D  EE + LIA+   D  P            
Sbjct: 663  EYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENV 722

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 723  DLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 782

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 783  NYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 842

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAP 822
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+      LD+DGL AP
Sbjct: 843  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDKLDEDGLIAP 900

Query: 823  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 882
            G  +   D+ I K +P+      +   GQ  + +     +      E  +VD+V + +++
Sbjct: 901  GVRVSGEDIIIGKTTPIAPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 957

Query: 883  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 942
            +G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+NPH  P
Sbjct: 958  DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1017

Query: 943  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1002
            SRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G +++Y
Sbjct: 1018 SRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGFEVMY 1072

Query: 1003 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            +G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1073 NGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1127


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
            guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
            JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
          Length = 1236

 Score =  607 bits (1564), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 382/1138 (33%), Positives = 591/1138 (51%), Gaps = 132/1138 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  + R++              +   
Sbjct: 22   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 81

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTE------ 130
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++ + V  S         
Sbjct: 82   EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHE 141

Query: 131  --------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
                    K       V +G++PIMLRS  C+L    E E   L ECP D GGYF+I G+
Sbjct: 142  LEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 201

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  +   +I   + K+Y     
Sbjct: 202  EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQIKLYGREEK 257

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 258  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 316  GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 372

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 373  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 432

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 433  ---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 489

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++
Sbjct: 490  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIL 549

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 550  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 607

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL          
Sbjct: 608  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 667

Query: 624  ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDTT----- 663
                  +G   +   + +G++EY+D  EE   +IA+   D         AT   +     
Sbjct: 668  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 727

Query: 664  ---------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                                 H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 728  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 787

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+
Sbjct: 788  GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 847

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDGL 819
            ++MN+SS+DRG  R +  + Y  + ++      +   +P R+     +    + LDDDGL
Sbjct: 848  MIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGL 907

Query: 820  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 879
             APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V L 
Sbjct: 908  IAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGIVDQVLLT 964

Query: 880  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 939
            ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI PDLI+NPH
Sbjct: 965  TNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPH 1024

Query: 940  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 999
              PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG+   G +
Sbjct: 1025 AIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHGYQSRGFE 1079

Query: 1000 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            ++Y G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG 
Sbjct: 1080 VMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGL 1137


>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
            (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
            AMRC-C165) GN=rpoB PE=3 SV=1
          Length = 1195

 Score =  570 bits (1470), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 368/1133 (32%), Positives = 582/1133 (51%), Gaps = 143/1133 (12%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFV------NTGIRKIVRANDRIVSGIDPSIF------- 79
            +++  + K  G+V   LDS N F       N+ +++IV    ++    DP  F       
Sbjct: 3    EIVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDET-KVSDDADPGYFVLDPAKT 61

Query: 80   ------LRFKDVR------------IGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN 120
                  + +  VR            IG+P +    G S ++ P+  RL D+ Y AP+ + 
Sbjct: 62   GGHDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLK 121

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD----------------EAELA 164
            +  V+    + + + K    +G +P+M+RS  C L  ++                  +L 
Sbjct: 122  LRIVEDGIEKGSEIIK----VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQ 177

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS-TETVKSKTV 223
             +GE P DPGGYFII G+E+V++  E L+ N+++++ + +      V+   ++    + +
Sbjct: 178  YVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVEWEDRYESKVEVSKVFSQRGGFRAL 237

Query: 224  IQMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
              MEKG    + + +      +P++++MKA+G+E D +V   +   P    ++  +IE+ 
Sbjct: 238  TSMEKGTDGTINVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPEMEPIIYSNIEDS 297

Query: 281  ANLDIY------TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
             N  +       T E A+ YLE   KR   G     R+ +   +L    L ++    ++ 
Sbjct: 298  KNPKVLPPNGVNTTEDAISYLE---KRFAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDR 354

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  Y+  M R ++E  L     DDKD++ NKR++L+G L+  LF   F++++ +++  
Sbjct: 355  IRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQ 414

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
            ++   +   R     +   + +D +T  +   +STGN+        R G++Q+L R+S +
Sbjct: 415  LEKTYN---RKRGIKIRPAVRQDLLTQRVLHAMSTGNW-----IGGRTGVSQLLDRVSNL 466

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             T+ H+ R+     +++     R L P+QWG +CP +TPEG+ CGLVKN AL+ +VT   
Sbjct: 467  STISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGI 526

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
            +   ++ +   + V   E+L      +P    V  NG  +G H  P+     +R+ RR+G
Sbjct: 527  DPDSVMEILKGMDVR--EVLE----ESPKKGRVYLNGDFIGYHDDPRYLVSRIREERRSG 580

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
            ++ + V+V  ++    V + SD GR+ RPL+I   G + +    ++ L  G  SF+D ++
Sbjct: 581  RMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLDRTMIERLKHGEISFEDLVK 640

Query: 635  EGLIEYLDVNEENNALIALYEGDA------------------------------------ 658
            +G IE+LD  EE +  +A+Y  D                                     
Sbjct: 641  QGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLECGFCHQR 700

Query: 659  -------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   + + TH+EI+P  ILGV+A +IPYP HN SPR T   AM KQ++G    N   
Sbjct: 701  FNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRI 760

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+  +LL YPQ PL+ TR ++ + YD+  AGQN  VAV+SY GY+I+DA+V+NK++++
Sbjct: 761  RPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIE 820

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA---ERMQILDDDGLAAPGEIIKP 828
            RG GR    + Y+A  ++Y     D+   P     GA   E  + LDD G+  P   ++ 
Sbjct: 821  RGLGRSTFFRTYSAEERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEG 880

Query: 829  NDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 885
            +DV I K SP   LE     + P      R R +  T +    E+  VD V L   ++  
Sbjct: 881  SDVLIGKTSPPRFLEEGEERLGP-----QRRRESSVTMR--PNESGYVDNVFLTVSESNS 933

Query: 886  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 945
              +K  +R  R PELGDKF+SRHGQKGV G +V QED PF+E GI PDLI NPH  PSRM
Sbjct: 934  RVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRM 993

Query: 946  TVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1004
            TVG ++E++GGK     GRF  G+ F GEP       +S+ + LVK+GF  +  +++Y G
Sbjct: 994  TVGHILEMIGGKIASRTGRFIDGTIFSGEPE------KSLRDALVKYGFRKSSTEVMYDG 1047

Query: 1005 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            ITG   +A IF+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GG 
Sbjct: 1048 ITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGL 1100


>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
            mimivirus GN=RPO2 PE=1 SV=2
          Length = 1196

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 352/1117 (31%), Positives = 558/1117 (49%), Gaps = 131/1117 (11%)

Query: 32   FQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRIVS--GIDPSIF---LRFKD 84
            F LL  F +   + LVK H+DSFN F+   I  I++  D ++S    +  I    L F D
Sbjct: 21   FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTME-----K 136
            + I  P  T++     L P       ++Y+A     +   Q      T+KT        +
Sbjct: 81   LGIKPP--TLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPE 138

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
             DV I +IPIM+ S  C L  + +        C  D GGYFI+ G+EKV+L  E +   +
Sbjct: 139  KDVPIAKIPIMVLSKYCNLTLRPDIAGK---HCKYDAGGYFIVNGSEKVVLSVESMIPRK 195

Query: 197  VIIDTDKKGN-----INASVTSSTETVKSKTV--IQMEKGKMYLLLNQFVKKIPIMVVMK 249
             ++ T +  N     +      +++ V +  +  ++M++    +L     K++ I   ++
Sbjct: 196  PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEEC---ANLDIYTQEKALEYLEGKVKRS-TF- 304
            A+G+E+D+++V  +  D +    LL  +  C   +N    T+E+ALE +  ++K + TF 
Sbjct: 256  ALGIETDEDIVDSI-LDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314

Query: 305  GSPPNDREGRAFSILRDVFLANVPVH--NNNFRP------KCFYVAVMLRRMVEAML--- 353
             + P  +  +    L  +    V  H  +    P      K  Y+  M+ ++++  L   
Sbjct: 315  DTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGA 374

Query: 354  ----NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSS 406
                     DD+D + NKR++L+G+L+  LF+  +  M+++  K   T +I   KP    
Sbjct: 375  REVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP--- 431

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SP 465
              ++   I  +SI  GL + LSTGNF  +     RKG++Q+L R++ + +L +M RV +P
Sbjct: 432  --NIIPHIKPNSIEQGLRQALSTGNFGSQS----RKGLSQMLNRMNHLHSLSYMRRVITP 485

Query: 466  QFEKSR-KVSGPRALQPSQWGMLCPCDTPEGE-ACGLVKNLALMTHVTTDEEEGPLISLC 523
              + S  K++ PR L  +Q+G +CP ++PEG+   GLVKN+A+M  +T +      I   
Sbjct: 486  TVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIES 545

Query: 524  YCLG-VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
            Y +G +  LE  + + LH      V  NG  LG  R      + +R +R  G++   V +
Sbjct: 546  YLIGKITTLESANKKRLHQ--YVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGL 603

Query: 583  FVNEKQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLRE--GLIE 639
             +N K    +I +DGGR+ RP L + D      K +   E+LD V S+++FL +   +IE
Sbjct: 604  VLNYKTAEFHIYTDGGRLIRPYLTVTDN-----KLNFKPEMLDEVNSWEEFLAKFPEVIE 658

Query: 640  YLDVNEENNALIAL-------------------------------YEGDATPDTTHIEIE 668
            Y+D  EE N ++A+                               Y+ +     TH EI 
Sbjct: 659  YVDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIH 718

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P  ILG+I+  IP+P HNQSPR  +Q    +QAMG    +   R D + Y+L +PQ PL+
Sbjct: 719  PCMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLV 777

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGY-DIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            T+R  +  G     AG+N+ VA+ SY+G  + ED++V+N S++ +G+ R   +KKY  I 
Sbjct: 778  TSRASKYTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEII 837

Query: 788  QKY-ANSTSDRILRPDRTGPGAER---MQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
            +K  A+S +   ++PDR      R      L ++G A    +I+  DV I   +P     
Sbjct: 838  KKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNP----- 892

Query: 844  SIMSPTGQTDSR-YRSARQTYKG--PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
                PT + D + Y+ A   YK   P      VD+V    + +G   IK  IR  R P +
Sbjct: 893  ---KPTAREDEKQYKDASSIYKSLIPGA----VDKVITEVNNDGYPIIKMRIRSERIPNV 945

Query: 901  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
            GDKFSSR GQKG  G    + D  FS+ G+ PD+I+NP+  P RMT+G++IE L GK   
Sbjct: 946  GDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCA 1005

Query: 961  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1020
              G   YG A   P    D + +I++ LV  G+   G + +Y+G+ G  L   IF+GP Y
Sbjct: 1006 VKGV--YGDA--TPFTSVD-LNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTY 1060

Query: 1021 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            YQ+LK MV DK H+R  GP  +LTRQ  EGR+R+GG 
Sbjct: 1061 YQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGL 1097


>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
            jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
            10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
          Length = 636

 Score =  421 bits (1082), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/517 (43%), Positives = 317/517 (61%), Gaps = 17/517 (3%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG ++G   +P+   + +R+ RR G++ ++ +V  NE+   ++I +D GR+ RPL++
Sbjct: 11   IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G  ++ + H+++L  G  +F D ++EG+IEYLD  EE NA IAL E + T   TH+E
Sbjct: 71   VENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALSEEELTEKHTHLE 130

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P TILG+ AG+ PYP HN +PR T   AMGKQ++G    N   R+D+  + L YPQ P
Sbjct: 131  IDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVP 190

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ T+  E++G+DK  AGQN  VA+MSY GY++EDAIV NKS++DRG GR    + Y A 
Sbjct: 191  IVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDAC 250

Query: 787  NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESP---LE 840
             ++Y     DR   PD+   G    E  + L++DG+ A    +K  DV + K SP   LE
Sbjct: 251  ERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLE 310

Query: 841  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
                    T Q   + R +    +   GE   +D+V L   K G+  +K  +R  R PEL
Sbjct: 311  EH----EITIQVKPQRRDSSVVVR--HGEEGYIDKVILTETKEGNRLVKVKVRDLRIPEL 364

Query: 901  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
            GDKF+SRHGQKGV G  V QED PF+E GI PD+I+NPH  PSRMTVG+++E+LGGK G 
Sbjct: 365  GDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGA 424

Query: 961  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1020
              GR   G+ F   SG  +    + + L   GF ++GK+++Y G TG   +  I++G  Y
Sbjct: 425  LEGRRIDGTIF---SGEKEW--DLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAY 479

Query: 1021 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            YQKL H+V  K+HAR  GP  +LTRQPTEGRAR GG 
Sbjct: 480  YQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGL 516


>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
            GN=RPA2 PE=3 SV=2
          Length = 1166

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 331/1094 (30%), Positives = 534/1094 (48%), Gaps = 144/1094 (13%)

Query: 42   RGLVKQHLDSFNYFVNTGIRKIVRAN---DRIVSGIDPS-----IFLRFKDVRIGQPSM- 92
            + + + H+DSF++ ++T + +        D IV     S     + L +    +GQPS+ 
Sbjct: 17   KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76

Query: 93   TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
             +D  S  L P  CR   MTY  P+   I        +   ++   V +G IP M R   
Sbjct: 77   EIDYDSHILYPSECRQRKMTYTIPLFATI----FKKFDDEMVDNFKVKLGDIPTMGRKKF 132

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------- 205
            C L G  + ELA+ GE  L+ GGYFI+ G EKV+ +     +N  I     K        
Sbjct: 133  CNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDF 192

Query: 206  ---NINASVTSSTETVKSKTVIQMEKGKMYLLL----NQFVKKIPIMVVMKAMGMESDQE 258
                +         T ++ T+  +  G + L L     +F+  IPI++++KA+   +D++
Sbjct: 193  TDYGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFL--IPIILILKALKNCTDRQ 250

Query: 259  VVQMVGRDPRYSALLLPSIEEC----ANLDIYT--QEKALEYLEGKVKRSTFGSPPNDRE 312
            + + + +       +   +E       +L+IY   Q KAL     ++  +   S  +D +
Sbjct: 251  IYERIVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDID 310

Query: 313  GRAFSILRDVFLA-NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
                    D+FL+ ++ +H +++  K   + +M+ ++  ++ N+  +D+ D V  + + L
Sbjct: 311  AG------DLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364

Query: 372  SGQL-VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT-------VGL 423
             G L + +L E LF  +   ++      L+K  +   FD  +F  RD +T       +GL
Sbjct: 365  GGHLYLQILSEKLFDCLHINLRAR----LNKELKRHNFDPMKF--RDVLTNQKINCGIGL 418

Query: 424  -----ERTLSTGNFDVKRFK---MHRKGMTQVLARLSFIGTLGHMTRVSP-QFEKSRKVS 474
                 E  L+TGN  + R     M   G   +  +L+ I  L H   +   Q+   +K +
Sbjct: 419  IGKRMENFLATGNL-ISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTT 477

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLAL-MTHVTTDEEEGPLISLCYCLGVEDLEL 533
              R L P  WG +CP  TP+G  CGL+ ++++    + ++E++  +      LG   +  
Sbjct: 478  SVRKLLPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNS 537

Query: 534  LSGEELHNPNS--FLVIFNGLILGKHRRP--KCFADVMRKLR-----------RAGKIG- 577
            +S +   N ++  + VIF+G+ LG   +   + F + +R L+           R  +I  
Sbjct: 538  ISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAF 597

Query: 578  -EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
              F     N +   +++AS   R  RP          +K  H                  
Sbjct: 598  IPFSGYSRNLQWPGIFLASTPARFTRP----------VKNLHY----------------N 631

Query: 637  LIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
             IE++   E+ N  IA  + D TP+TTH E++P  IL ++A +  +  +NQSPRN YQC 
Sbjct: 632  CIEWISPLEQMNLSIACTDEDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQ 691

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            M KQ MG    N   R D+ +Y L++P RP++ TRT      ++  +G NA VAV+SY+G
Sbjct: 692  MAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTG 751

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTA-INQKYANSTSDRILRP----------DRTG 805
            YD+EDA+++NKSS +RGFG  +V K YT  +N+  +NS S R ++            +  
Sbjct: 752  YDLEDAMIINKSSYERGFGHGVVYKSYTHDLNE--SNSQSTRGIKSSVRYKFLNNVSQKD 809

Query: 806  PGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG 865
                +++ +D DGL   G  +              T+G         D+  R A+ + K 
Sbjct: 810  KSKIKLENIDPDGLPKIGSQL--------------TKGK--PELCIFDTLKRGAKLS-KF 852

Query: 866  PDGETCVVDRVALC--SDKNGD-LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 922
             D E   ++ V +C   DKN D L I + IR++R P +GDKFSSRHGQKGV   +  Q D
Sbjct: 853  KDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVD 912

Query: 923  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 982
             PF+E GI PDLI+NPH FPSRMT+G +I+ +  K+G   G F     F     + D V 
Sbjct: 913  MPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDDN-DIVG 971

Query: 983  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1042
               + L+  GF+Y+G +++YSGI G PL+A IF+G +YYQ+L+HMV DK  ARG+GP  +
Sbjct: 972  HFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDI 1031

Query: 1043 LTRQPTEGRARNGG 1056
            LT QP +GR + GG
Sbjct: 1032 LTHQPVKGRKKGGG 1045


>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
            thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
            10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
          Length = 603

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/514 (43%), Positives = 307/514 (59%), Gaps = 11/514 (2%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG ++G    P+ F + MRK RR+G++   +++    +   +YI +D GR  RPL+I
Sbjct: 6    IYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPLII 65

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G   + E H+++L  G  S+DD +  G+IEYLD  EE NA IA+   +   + TH+E
Sbjct: 66   VEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEINDEHTHLE 125

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P T+LG+ AG+IP+ +HN SPRNT +  M KQA+G  A N   R D+  +LL +PQ P
Sbjct: 126  IDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVP 185

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ TR I++ GYD+  +GQN  VAVMSY GY++EDA+++NK+SL+RG  R    + Y A 
Sbjct: 186  IVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAA 245

Query: 787  NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
             ++Y     DR   P++   G       + LD+DG+  P   +   DV I K SP     
Sbjct: 246  ERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLE 305

Query: 844  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
             I    G    R R    T +   GE  +VD V L     G    K  +R  R+PELGDK
Sbjct: 306  EI-DEFGTVAERRRETSVTVR--HGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDK 362

Query: 904  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
            F+SRHGQKGV G IV QED PF+E GI PDLI+NPH  PSRM+VG+++E+L GKA    G
Sbjct: 363  FASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEG 422

Query: 964  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
            R   G+ F       +  + I E L  +GF   G + +Y+GITG  ++A IF+G  YYQK
Sbjct: 423  RRVDGTPFT-----GEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQK 477

Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            L HM  DK++AR  GP  +LTRQPTEGRAR GG 
Sbjct: 478  LHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGL 511


>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
            (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
            100126) GN=rpoB1 PE=4 SV=1
          Length = 604

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/516 (44%), Positives = 310/516 (60%), Gaps = 15/516 (2%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G H   +  A+ +R+LRR G+I   V+V        V I +D GR  RPL++
Sbjct: 6    VYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLIV 65

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
               G   +   H++++  G  + +D +R+GLIEYLD  EE NA +A+YE + TP+ TH+E
Sbjct: 66   VKDGKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAVYEHELTPEHTHLE 125

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            ++P  I+G+  G IPY  HN SPRNT   AM KQ++G    N   R D+  +L+ +PQ P
Sbjct: 126  LDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQVP 185

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++TT T   + +D+  AGQN  VAV+SY GY+IEDA++MNK S++RG GR    + Y + 
Sbjct: 186  IVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESE 245

Query: 787  NQKYANSTSDRILRP--DRTG-PGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
              +Y     D+   P  D +G  GAE    LD+DGL  P   + P+DV I + SP     
Sbjct: 246  EMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRF-- 303

Query: 844  SIMSPT--GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 901
             +  PT  G +  + R    T +    E  VVD V L   + G    K  +R  R PELG
Sbjct: 304  -LEEPTELGISPQKRRETSVTMR--SNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELG 360

Query: 902  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 961
            DKF+SRHGQKGV G +V +ED PF+E GI PDLI+NPH  PSRMTVG ++E++GGK G  
Sbjct: 361  DKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSL 420

Query: 962  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1021
             GR   GS F     H ++ E +  TL K+GFS+ GK+++Y GITG      IF+G IYY
Sbjct: 421  EGRRVDGSLF-----HGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVIYY 475

Query: 1022 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            QKL HMV  K+HAR  GP  +LTRQPTEGRAR GG 
Sbjct: 476  QKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGL 511


>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
            thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
          Length = 604

 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/519 (42%), Positives = 311/519 (59%), Gaps = 12/519 (2%)

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
            N   +  NG ++G    P+ F + +R  RR+G++   +++    +   +YI +D GR  R
Sbjct: 2    NKTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARR 61

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL+I + G   +KE H+++L  G   +DD + +G+IEYLD  EE N  IA+   + T + 
Sbjct: 62   PLIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEEH 121

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EI+P T+LG+ AG+IP+ +HN SPRNT +  M KQA+G  A N   R D+  +LL +
Sbjct: 122  THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHH 181

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ P++ TR I++ GYD+  +GQN  VAVMSY GY++EDA+++NK+SL+RG  R    + 
Sbjct: 182  PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241

Query: 783  YTAINQKYANSTSDRILRPDR--TGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPL 839
            Y A  ++Y     DR   P++   G  +ER  + LD+DG+  P   +   DV I K SP 
Sbjct: 242  YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPP 301

Query: 840  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
                 I    G    R R    T +   GE  +VD V L     G    K  +R  R+PE
Sbjct: 302  RFLEEI-DEFGTVAERRRETSVTVR--HGEEGIVDAVLLTETVEGSRLAKIRVREQRQPE 358

Query: 900  -LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
             +GDKF+SRHGQKGV G IV QED PF+E G+ PDLI+NPH  PSRM+VG+++E+L GKA
Sbjct: 359  FIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKA 418

Query: 959  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
                GR   G+ F       +  + + E L  +GF   G + +Y+GITG  ++A IF+G 
Sbjct: 419  ACMEGRRVDGTPFT-----GEEEKDLKEALKANGFESAGVETLYNGITGERIEAEIFIGV 473

Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
             YYQKL HM  D+++AR  GP  +LTRQPTEGRAR GG 
Sbjct: 474  AYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGL 512


>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
            (strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
          Length = 611

 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/518 (43%), Positives = 316/518 (61%), Gaps = 19/518 (3%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++   + P+     +R  RR+GK+    S+  NE+   ++I++DGGR  RPLV+
Sbjct: 7    VYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVRPLVV 66

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G S++    ++++ +   +F+  ++ G+IE+LD  EE NA IA+Y  + T + TH+E
Sbjct: 67   VENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEITFENTHVE 126

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  ILG+ AG+ PYP HN +PR T   AMGKQ++G    N   RMD+  +LL YPQ P
Sbjct: 127  IDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVP 186

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L+ T+  E++G+DK  AGQN  VAVMSY GY++EDA V+NK+SL+RG GR    + Y + 
Sbjct: 187  LVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESF 246

Query: 787  NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESP---LE 840
             ++Y     D+   P++   G    E  + L DDGL      ++  DV + K SP   LE
Sbjct: 247  EKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLE 306

Query: 841  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
             +      T QT S+ R    T +   GE  VVD V L   K G+   K  +R  R PE 
Sbjct: 307  EQ----EITLQTKSQRRDTSVTIR--HGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEF 360

Query: 901  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG- 959
            GDKF+SRHGQKGV G +V QED PF+E G+ PDLI+NPH  PSRMT+G+++E++GGK G 
Sbjct: 361  GDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS 420

Query: 960  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1019
            + C R   G+ F   SG  +   ++   L  +GF+++GK+ +Y G TG  L+  IF+G  
Sbjct: 421  LECRRVD-GTIF---SGEGEW--ALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVA 474

Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            YYQKL H+V  K+HAR  GP  +LTRQPTEGRAR GG 
Sbjct: 475  YYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGL 512


>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
            (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
            SV=1
          Length = 608

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/514 (41%), Positives = 304/514 (59%), Gaps = 10/514 (1%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G H  P+  A+ +R+ RR G++ E V+V V ++   V + +D GR  RPL++
Sbjct: 9    VYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLLV 68

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G   + +  ++ + +G   F+D +  G +E++D  EE + L+ + E + T D TH+E
Sbjct: 69   VENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTDHTHLE 128

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  I G+ AG+IPYP HN SPR T    M KQ++G  A N   R D+  +LL YPQ+ 
Sbjct: 129  IDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKA 188

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ T+T E +GYD   AGQN  VAVMSY G++IEDA+VMNK S++R   R    + Y   
Sbjct: 189  MVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGE 248

Query: 787  NQKYANSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
             ++Y     DR   P    R   G +    LDDDGL  P   +  + V + K SP     
Sbjct: 249  ERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFLE 308

Query: 844  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
                  G +  + R    T +   GE  VVD V L   ++G    K  +R  R PELGDK
Sbjct: 309  EPEDMGGLSPQKRRETSVTMR--SGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDK 366

Query: 904  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
            F+SRHGQKGV G +  QED PF++ G+ PDL++NPH  PSRMTVG ++E+LGGKAG   G
Sbjct: 367  FASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDG 426

Query: 964  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
            R   G+ F   +G  +  + I  TL   GF  +GK+++YSG++G  ++A IF+G I+Y K
Sbjct: 427  RSVDGTPF---TGEGE--DEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHK 481

Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            L HMV +K+HAR  GP  +LTRQPTEGRAR GG 
Sbjct: 482  LYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGL 515


>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
            (strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
          Length = 608

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/514 (41%), Positives = 304/514 (59%), Gaps = 10/514 (1%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G H  P+  A+ +R+ RR G++ E V+V V ++   V + +D GR  RPL++
Sbjct: 9    VYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLLV 68

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G   + +  ++ + +G   F+D +  G +E++D  EE + L+ + E + T D TH+E
Sbjct: 69   VENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTDHTHLE 128

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  I G+ AG+IPYP HN SPR T    M KQ++G  A N   R D+  +LL YPQ+ 
Sbjct: 129  IDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKA 188

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ T+T E +GYD   AGQN  VAVMSY G++IEDA+VMNK S++R   R    + Y   
Sbjct: 189  MVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGE 248

Query: 787  NQKYANSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
             ++Y     DR   P    R   G +    LDDDGL  P   +  + V + K SP     
Sbjct: 249  ERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFLE 308

Query: 844  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
                  G +  + R    T +   GE  VVD V L   ++G    K  +R  R PELGDK
Sbjct: 309  EPEDMGGLSPQKRRETSVTMR--SGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDK 366

Query: 904  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
            F+SRHGQKGV G +  QED PF++ G+ PDL++NPH  PSRMTVG ++E+LGGKAG   G
Sbjct: 367  FASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDG 426

Query: 964  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1023
            R   G+ F   +G  +  + I  TL   GF  +GK+++YSG++G  ++A IF+G I+Y K
Sbjct: 427  RSVDGTPF---TGEGE--DEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHK 481

Query: 1024 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGF 1057
            L HMV +K+HAR  GP  +LTRQPTEGRAR GG 
Sbjct: 482  LYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGL 515


>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
            GN=NRPD2a PE=1 SV=1
          Length = 1172

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 323/1088 (29%), Positives = 535/1088 (49%), Gaps = 126/1088 (11%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI-------------FLRFKD 84
            F    GL+   L+S+NYF+  G++ + ++   ++  ++PS               ++F +
Sbjct: 42   FFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEML--VEPSFDVVKKKDNDWRYATVKFGE 99

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---------------QGSHT 129
            V + +P+   D    +  P   RL +MTY+A I VN++                 Q ++ 
Sbjct: 100  VTVEKPTFFSDDKELEFLPWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYV 159

Query: 130  EKTTME--KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
            EK  ++  K D++IG IP+M++S  C    K + E  + G+C  D GGYF+IKG EKV +
Sbjct: 160  EKKILDVKKQDILIGSIPVMVKSILCKTSEKGK-ENCKKGDCAFDQGGYFVIKGAEKVFI 218

Query: 188  IQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQM---EKGKMY------LLLNQF 238
             QEQ+   R+ I      N   +V+  +E  +++ ++++   EK + Y      L +   
Sbjct: 219  AQEQMCTKRLWI-----SNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFL 273

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE---------ECANLDIY 286
              +IP+ ++  A+G+ SD+E + ++   G D   +  L+ SI           C N    
Sbjct: 274  STEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGN---- 329

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
                AL Y+E ++K + F  PP      A S+   + L   P    + + K  ++  M++
Sbjct: 330  ---NALTYVEQQIKSTKF--PP------AESVDECLHLYLFP-GLQSLKKKARFLGYMVK 377

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
             ++ +   K   +++D   NKR+EL+G+L+    E   +  ++  ++ +   + K   S 
Sbjct: 378  CLLNSYAGKRKCENRDSFRNKRIELAGELL----EREIRVHLAHARRKMTRAMQK-HLSG 432

Query: 407  RFDL---SQFIVRDSITVGLERTLSTGNFDVKRFKMHR-KGMTQVLARLSFIGTLGHMTR 462
              DL     ++    IT GL R  STG +     KM R  G+   L R + + TL  + R
Sbjct: 433  DGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRR 492

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
               Q   + KV   R   PS WG +C   TP+GE CGLVKN++L+  V+T   E  +  L
Sbjct: 493  TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKL 552

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
              C G+E+L   +   L   +   V+ NG  +G     + F   ++  RR  ++   + +
Sbjct: 553  FAC-GMEELMDDTCTPLFGKHK--VLLNGDWVGLCADSESFVAELKSRRRQSELPREMEI 609

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLD 642
              ++    V I +D GR+ RPL++ +  + ++K+    +       FD  L  G++E + 
Sbjct: 610  KRDKDDNEVRIFTDAGRLLRPLLVVE-NLQKLKQEKPSQY-----PFDHLLDHGILELIG 663

Query: 643  VNE--ENNALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG- 698
            + E  + N    + +    P   TH E++   +LGV   ++P+ +H+   R  YQ     
Sbjct: 664  IEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHC 723

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            +QA+G  + N   R D+L   L YPQ+PL  T   E +  + L  GQNA VAV  + GY+
Sbjct: 724  QQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYN 783

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTA-INQKYANSTS--DRILRPDRTGPGAERMQILD 815
             ED+IVMNK+SL+RG  R   ++ Y A ++ K +      D +++  +T     ++  L+
Sbjct: 784  QEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLE 843

Query: 816  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 875
            DDG    G  +   D+ I +           + +G        A  + K    E  +V +
Sbjct: 844  DDGFPFIGANMSTGDIVIGR----------CTESG--------ADHSIKLKHTERGIVQK 885

Query: 876  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 935
            V L S+  G       +R  R P LGDKFSS HGQKGV G + +Q++FPF+ +GI PD++
Sbjct: 886  VVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIV 945

Query: 936  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS--AFGEPSGHADT-----VESISETL 988
            +NPH FPSR T G+++E    K G++C     GS  A+ + + HA       V  I+E L
Sbjct: 946  INPHAFPSRQTPGQLLEAALSK-GIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQL 1004

Query: 989  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1048
             + GFS  G + +Y+G +G  +++ IFMGP +YQ+L HM  DK+  R +GP   LTRQP 
Sbjct: 1005 HRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPV 1064

Query: 1049 EGRARNGG 1056
              R R GG
Sbjct: 1065 ADRKRFGG 1072


>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
            GN=NRPD2b PE=2 SV=1
          Length = 1119

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 313/1062 (29%), Positives = 518/1062 (48%), Gaps = 118/1062 (11%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
            F +  GL+   L+S+N+F+  G++               ++F  F D+ + +PS  V   
Sbjct: 33   FFEEFGLISHQLNSYNFFIEHGLQ---------------NVFESFGDILV-EPSFDVIKK 76

Query: 98   SEKLNPHMCRLSDMTYAA---PILVNIEYV---QGSHTEKTTME--KNDVVIGRIPIMLR 149
             +          D  YA     I++  +     Q  + EK  ++  K D++IG IP+M++
Sbjct: 77   KD---------GDWRYATVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVK 127

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA 209
            S  C    K + E  + G C  D GGYF+IKG EKV + QEQ+   R+ I      N   
Sbjct: 128  SVLCKTSEKGK-ENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI-----SNSPW 181

Query: 210  SVTSSTETVKSKTVIQM---EKGKMYLLLNQFVK------KIPIMVVMKAMGMESDQEVV 260
            +V+  +ET +++ ++++   EK + Y ++ + +       +IP+ ++  A+G+ SD+E +
Sbjct: 182  TVSFRSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAM 241

Query: 261  QMV---GRDPRYSALLLPSIEECANL--DIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             ++   G D   +  L+ SI E   +         AL Y+E ++K + F  PP      A
Sbjct: 242  DLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKF--PP------A 293

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
             S+   + L   P      + K  ++  M++ ++ A   K   +++D   NKR+EL+G+L
Sbjct: 294  ESVDDCLRLYLFPCLQG-LKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGEL 352

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL---SQFIVRDSITVGLERTLSTGNF 432
            +    E   +  ++  ++ +   + K   S   DL     ++    IT GL R  STG +
Sbjct: 353  L----EREIRVHLAHARRKMTRAMQK-QLSGDGDLKPIEHYLDASVITNGLNRAFSTGAW 407

Query: 433  DVKRFKMHR-KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
                 KM R  G+   L R + + TL  + R   Q   + KV   R   PS WG +C   
Sbjct: 408  SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLS 467

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TP+GE CGLVKN++L+  V+T   E  ++ + +  G+E+L   +   L   +   V+ NG
Sbjct: 468  TPDGENCGLVKNMSLLGLVSTQGLES-VVEMLFTCGMEELMNDTSTPLCGKHK--VLLNG 524

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
              +G     + F   ++  RR  ++   + +  ++    V I +D GR+ RPL++ +  +
Sbjct: 525  DWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVE-NL 583

Query: 612  SRIKE-----HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             ++K+     +  K LLD           G+ E  D          L E     + TH E
Sbjct: 584  HKLKQDKPTQYPFKHLLDQGIL----ELIGIEEEEDCTTAWGIKQLLKE---PKNYTHCE 636

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG-KQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            ++   +LGV   ++P+ +H+   R  YQ     +QA+G  + N   R D+L   L YPQ+
Sbjct: 637  LDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 696

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            PL  T   E +  + L  GQNA VAV  + GY+ ED+IVMNK+SL+RG  R   ++ Y A
Sbjct: 697  PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 756

Query: 786  -INQKYANSTS--DRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETR 842
             ++ K +      D +++  +T     ++  L+DDG    G  +   D+ I +       
Sbjct: 757  EVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGR------- 809

Query: 843  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 902
                     T+S    A  + K    E  +V +V L S+  G       +R  R P LGD
Sbjct: 810  --------CTES---GADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGD 858

Query: 903  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 962
            KFSS HGQKGV G + +Q++FPF+ +GI PD+++NPH FPSR T G+++E    K G++C
Sbjct: 859  KFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSK-GIAC 917

Query: 963  ---GRFHYGSAFGEPSGHADT-----VESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1014
                +    +A+ + + HA       V  I+E L + GFS  G + +Y+G +G  +++ I
Sbjct: 918  PIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLI 977

Query: 1015 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            FMGP +YQ+L HM  +K+  R +GP   LTRQP   R R GG
Sbjct: 978  FMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGG 1019


>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
            OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
            GN=rpa2 PE=3 SV=2
          Length = 1174

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 330/1096 (30%), Positives = 507/1096 (46%), Gaps = 141/1096 (12%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVR-------ANDRIVS------GIDPSIFLRFKD 84
            F  ++  VK H+DSFN   N G+            A D I             I  R  +
Sbjct: 22   FPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDE 81

Query: 85   VRIGQPSMTV---DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            V+I +P ++      ++ K+ P   R    TY + +++   +       ++ M +    +
Sbjct: 82   VQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMRE----V 137

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV--LLIQEQLSKNRVII 199
            G IPIM+RS RC L G   AEL    E   + GGYFI+ G EK+  +LI  + +    II
Sbjct: 138  GMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAII 197

Query: 200  DTD--KKGNINASVTSSTETVK------SKTVIQMEKG----KMYLLLNQFVKKIPIMVV 247
                  +G   +    S   V+      + T+  +  G    + +   N+++  IP M++
Sbjct: 198  RPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYL--IPSMMI 255

Query: 248  MKAMGMESDQEVVQ-MVGRDPRYSALLLPSIE----ECANLDIYTQEKALEYLEGKVKRS 302
            +KA+   SD+E+ + +VG+D   +  L   +E       +  +Y+Q + L+YL  K  R 
Sbjct: 256  LKALLETSDKEIFEGIVGKDLG-NTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKF-RV 313

Query: 303  TFGSPPN--DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
              G   +  D E   F +L+ V L ++    + FR   F    M+R++   +  +   D+
Sbjct: 314  VLGVAEDLTDVEVGRF-LLQKVVLVHLREAKDKFRLLLF----MIRKLYALVAGECCADN 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR---- 416
             D   ++ + L G L   + ++  +  ++ ++  +++ + + +    F   +++ R    
Sbjct: 369  PDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK 428

Query: 417  --DSITVGLERTLSTGNF--DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS-PQFEKSR 471
              + I   L+  LSTGN   +         G T V  +L+F   L H   V    F    
Sbjct: 429  INNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAEL 488

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI-SLCYCLGVED 530
            K +  R L P  WG +CP  TP+G  CGL+ +LA    + T   +   I SL   LGV+ 
Sbjct: 489  KTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDP 548

Query: 531  LELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLR-------RAGKIGE--- 578
              ++     H      V  +G I+G   ++  K  ADV+R ++       R G   E   
Sbjct: 549  PSVVG----HESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAK 604

Query: 579  --------FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 630
                    +V    N +   +Y+ S+  R+ RP+           +H     LD +  F+
Sbjct: 605  VPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPV-----------KHISTGELDMLGPFE 653

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSP 689
                     Y+D        IA +  +  P  +TH+E  P  +L ++A + P+   NQSP
Sbjct: 654  QV-------YMD--------IACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSP 698

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RN YQC MGKQ MG        R D+ LY L   Q P++  +     G D    G NA V
Sbjct: 699  RNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVV 758

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA- 808
            AV+SY+GYD+EDA+++NKS+ +RGFG   V K   + +        + ++      PG+ 
Sbjct: 759  AVISYTGYDMEDAMILNKSAHERGFGYGTVYKG-ESFDLSQKRRRGEPVVHHFGFAPGST 817

Query: 809  ---ERMQILDDDGLAAPGEIIKPND--VYINKESPLETRGSIMSPTGQTDSRYRSARQTY 863
               E +Q LD DGL   G  ++  D  V    ES           TGQ      +  +TY
Sbjct: 818  PRREWLQKLDADGLPFIGIKLEDGDPIVAYYDES-----------TGQ------NFIETY 860

Query: 864  KGPDGETCVVDRVALCSDKNGDL-C--IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 920
             G   E   VD V L  +  GD  C  I   +R TR P +GDKFSSRHGQKG+C      
Sbjct: 861  HGT--EPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPT 918

Query: 921  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 980
             D PF+E G+ PD+I+NPH FPSRMT+G  IE L GKAG   G     + F   S     
Sbjct: 919  VDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIY-SEQQTA 977

Query: 981  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1040
             +   E LVK G++Y+G + +YSGITG  ++A I++G +YYQ+L+HMV DK   R +GP 
Sbjct: 978  ADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPI 1037

Query: 1041 VMLTRQPTEGRARNGG 1056
              LTRQP +GR R GG
Sbjct: 1038 HNLTRQPVKGRKRAGG 1053


>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
            OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
          Length = 1193

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 314/1118 (28%), Positives = 518/1118 (46%), Gaps = 129/1118 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS------------ 77
            ++  LL ++ +  GLVK  L++F++F+   I+ I+     I+     S            
Sbjct: 24   NRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIKNGAVEE 83

Query: 78   ---------IFLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNI-EYVQG 126
                     I L+F++V + +P++T D  + + L P   R   +TY + + V++ EYV  
Sbjct: 84   GYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYVLR 143

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
               E    +   V I +IPIMLRS  C LY     E   LGE   DPGGYFII G E+VL
Sbjct: 144  DEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVL 203

Query: 187  LIQEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQM-----------------EK 228
            + Q + + NR I   +K    +   + S +E      +IQ+                 + 
Sbjct: 204  IGQLRNAYNRSICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKN 263

Query: 229  GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQ 288
            G + L+++Q    IPI  V + + + +  ++  ++G +      L+  +EE ++  I+  
Sbjct: 264  GTIDLIISQTKTPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIF-D 322

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF--LANVPVHNNNFRPKCFYVAVMLR 346
            +  +E  +              ++   F I +D+F  L     H      K   +  M+R
Sbjct: 323  DMEIEISQEDDFNEENEESTEKKKITQF-IEQDMFPHLGVSSTH----EEKAILLGKMVR 377

Query: 347  RMV---EAMLNKD---------------------AMDDKDYVGNKRLELSGQLVSLLFED 382
            +++   E  +N +                       +D+D   NKR+E +G L   LF  
Sbjct: 378  KLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRM 437

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK 442
            L+K  I          +++  + +R ++        IT GL  + STGN+ V++    R 
Sbjct: 438  LYKRFIKSN-------INQLEKRNRVEMDVISKNAFITTGLHFSFSTGNWGVQKNNYIRT 490

Query: 443  GMTQV-LARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
            G+ Q+   ++SF     ++ R      K  K +  R + PS     CP +TPEG+  G+ 
Sbjct: 491  GVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGIT 550

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLG-----VEDLELLSGEELHNPNSFLVIFNGLILGK 556
             N +++  V+       +  +          V ++ L   ++  +  S + + NG I G 
Sbjct: 551  LNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFLSKLSIIFV-NGGICGL 609

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVS-VFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              +P+     +R L+    +   VS VF+ E +  V+I+SD GR  RP++     +  IK
Sbjct: 610  TSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKE-VHISSDAGRFIRPVL----NLQSIK 664

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT---HIEIEPFTI 672
             +          SF + L  G + Y D  E   + IA+   D +   T    +EI    +
Sbjct: 665  TNGNVMW----NSFQNCLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSMEIHASCM 720

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV+A  IP+  H QSPR  YQ +M KQA+GNI  + + + D+   ++ Y QRPL+TT+ 
Sbjct: 721  LGVMAAQIPFAEHTQSPRLCYQSSMAKQAIGNIPSHHV-KSDNTTRVMDYVQRPLVTTQI 779

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
             E+  ++    G NA VAV  Y+G++ ED+I++NK+S+DRG    +  K  T I ++   
Sbjct: 780  AEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYK--TIIVEERKI 837

Query: 793  STSDRILRPDRTGPGAERMQILDDD------GLAAPGEIIKPNDVYINKESPLETRGSIM 846
              +++I  P  +        +L+D+      G+      +K NDV +         G ++
Sbjct: 838  GVNEKICMPVASVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLV---------GKVI 888

Query: 847  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 906
            +   +  +R  +   T      E   VDR+   S K G L  K +I   +RPE+GDKF S
Sbjct: 889  TKISKDGTRQETDHSTIVSI-SEEGKVDRIIRTS-KKGILMFKIVIAQQKRPEIGDKFCS 946

Query: 907  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR-- 964
               QKG  G I+++ D PF E G  PD+I+NPH  PSRMT+ +++  + GK    C +  
Sbjct: 947  AMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKT--CCAKNE 1004

Query: 965  -FHYGSAFGEPSGH--ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1021
             F   S F E S     D + ++ + L + G++YNG + +  G  G  L+A IF GP+YY
Sbjct: 1005 TFGDASPFQESSLEKPQDKIHALCKELEECGYNYNGTETMMCGWNGKKLRAEIFFGPVYY 1064

Query: 1022 QKLKHMVLDKMHARGSG--PRVMLTRQPTEGRARNGGF 1057
             +L HMV DK+ +R S    R  +TRQP  GRA  GG 
Sbjct: 1065 HRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGL 1102


>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
            PE=2 SV=1
          Length = 1136

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 314/1058 (29%), Positives = 485/1058 (45%), Gaps = 106/1058 (10%)

Query: 44   LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
            L + H++SFNY V+ G+   V+A         D  I     D  I  P++    + ++++
Sbjct: 38   LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEVS 97

Query: 103  --PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
              P  CR    TY   +  +I +     ++    +     +G +PIM++S  C LY    
Sbjct: 98   VYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQ----FLGYVPIMVKSKLCNLYNLPP 153

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------INAS 210
              L    E   + GGYFII G EKV+ +     +N  I     K            ++  
Sbjct: 154  QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSMH 213

Query: 211  VTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRD 266
                  +  +  +  +E G   ++LN   +K    +P+   +KA+   SD ++ Q + + 
Sbjct: 214  CVREEHSAVNMNLHYLENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 271

Query: 267  PRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSIL 319
                + L  S+ +   + +     TQ++ L YL G+  R     P   PN++        
Sbjct: 272  KEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE----- 325

Query: 320  RDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
               FL N  + +H  +   K FY+  ++ R + A+   + M+D  D + N+ +   GQL 
Sbjct: 326  ---FLFNQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 381

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
             +  ++  +  +  ++   D    K + S   D  +  F +   +T   E   +TGN   
Sbjct: 382  LMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS 441

Query: 435  KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
            K     +   G+  V  +L+FI  L H   V     F K R  +  R L P  WG LCP 
Sbjct: 442  KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPV 500

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
             TP+GE CGL+ +L  +  V T       I    C LGV  ++            + V+ 
Sbjct: 501  HTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLL 558

Query: 550  NGLILG---KHRRPKCFADVMR--KLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +G+++G   K   P   AD +R  K+ R  +I  +  V        V I   G     P 
Sbjct: 559  DGVMVGWVDKELAPG-IADSLRHFKVLREKRIPPWTEV--------VLIPMTGKPSLYPG 609

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TT 663
            +       R+           VR   + L  G  E +   E+    +A++E +     TT
Sbjct: 610  LFLFTTPCRL-----------VRPVQN-LELGKEELIGTMEQIFMNVAIFEDEVFAGVTT 657

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H E+ P ++L VIA  IP+  HNQSPRN YQC MGKQ MG        R D+ LY L  P
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-K 782
            Q PL+     +    D    G NA VAV+SY+GYD+EDA+++NK+S +RGF    V K +
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLET 841
            +  +++K     S  +       PG  R +Q LDDDGL   G  ++  D Y +       
Sbjct: 778  FIDLSEKIKQGDSSLVF---GMKPGDPRILQKLDDDGLPFIGAKLQYGDPYYS------- 827

Query: 842  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRP 898
               +   TG++   Y  ++        E CVVD + +CS+  G     C+   +R  R P
Sbjct: 828  --YLNLNTGESFVMYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 877

Query: 899  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
             +GDKF+SRHGQKG+   +   ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+
Sbjct: 878  TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 937

Query: 959  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
                G  H  + F   S     +E   E L   G+++ G + +YSGI+G  L+A IF+G 
Sbjct: 938  AALHGLCHDATPFIF-SEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGV 996

Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            +YYQ+L+HMV DK   R +G R  +T QP  GR   GG
Sbjct: 997  VYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGG 1034


>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
            PE=1 SV=2
          Length = 1135

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 315/1058 (29%), Positives = 484/1058 (45%), Gaps = 106/1058 (10%)

Query: 44   LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
            L + H++SFNY V+ G+   V+A         D  I     D  I  P++    + ++ N
Sbjct: 38   LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEAN 97

Query: 103  --PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
              P  CR    TY   +  +I +     ++    +     +G +PIM++S  C L     
Sbjct: 98   VYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ----FLGYVPIMVKSKLCNLRNLPP 153

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------INAS 210
              L    E   + GGYFII G EKV+ +     +N  I     K            ++  
Sbjct: 154  QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMH 213

Query: 211  VTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRD 266
                  +  +  +  +E G   ++LN   +K    +P+   +KA+   SD ++ Q + + 
Sbjct: 214  CVREEHSAVNMNLHYLENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 271

Query: 267  PRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSIL 319
                + L  S+ +   + +     TQ++ L YL G+  R     P   PN++        
Sbjct: 272  KEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE----- 325

Query: 320  RDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
               FL N  + +H  +   K FY+  ++ R + A+   + M+D  D + N+ +   GQL 
Sbjct: 326  ---FLFNQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 381

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
             +  ++  +  +  ++   D    K S S   D  +  F +   +T   E   +TGN   
Sbjct: 382  LMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS 441

Query: 435  KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
            K     +   G+  V  +L+FI  L H   V     F K R  +  R L P  WG LCP 
Sbjct: 442  KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPV 500

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
             TP+GE CGL+ +L  +  V T       I    C LGV  ++            + V+ 
Sbjct: 501  HTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLL 558

Query: 550  NGLILG---KHRRPKCFADVMR--KLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +G+++G   K   P   AD +R  K+ R  +I  ++ V        V I   G     P 
Sbjct: 559  DGVMVGWVDKDLAPG-IADSLRHFKVLREKRIPPWMEV--------VLIPMTGKPSLYPG 609

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TT 663
            +       R+           VR   + L  G  E +   E+    +A++E +     TT
Sbjct: 610  LFLFTTPCRL-----------VRPVQN-LALGKEELIGTMEQIFMNVAIFEDEVFAGVTT 657

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H E+ P ++L VIA  IP+  HNQSPRN YQC MGKQ MG        R D+ LY L  P
Sbjct: 658  HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-K 782
            Q PL+     +    D    G NA VAV+SY+GYD+EDA+++NK+S +RGF    V K +
Sbjct: 718  QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLET 841
            +  +++K     S  +       PG  R +Q LDDDGL   G  ++  D Y +       
Sbjct: 778  FIDLSEKIKQGDSSLVF---GIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYS------- 827

Query: 842  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRP 898
               +   TG++   Y  ++        E CVVD + +CS+  G     C+   +R  R P
Sbjct: 828  --YLNLNTGESFVMYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 877

Query: 899  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
             +GDKF+SRHGQKG+   +   ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+
Sbjct: 878  TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 937

Query: 959  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018
                G  H  + F   S     +E   E L   G+++ G + +YSGI+G  L+A IF+G 
Sbjct: 938  AALHGLCHDATPFIF-SEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGV 996

Query: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            +YYQ+L+HMV DK   R +G R  +T QP  GR   GG
Sbjct: 997  VYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGG 1034


>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
            PE=2 SV=2
          Length = 1135

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 312/1070 (29%), Positives = 490/1070 (45%), Gaps = 124/1070 (11%)

Query: 41   VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSE 99
            ++ L + H+DSFNY    G+   V+A         D  I L   D  I  PS+    + +
Sbjct: 35   LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94

Query: 100  KLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG 157
             LN  P  CR    TY   +  +I +      +    +     +G +PIM++S  C LY 
Sbjct: 95   DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQ----FLGYVPIMVKSKLCNLYN 150

Query: 158  KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------I 207
                 L    E   + GGYFII G EKV+ +     +N  I     K            +
Sbjct: 151  LPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGV 210

Query: 208  NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMV 263
            +        +  +  +  +E G   ++LN   +K    +P+   +KA+   SD ++ Q +
Sbjct: 211  SMRCVREEHSAVNMNLHYVENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQEL 268

Query: 264  GRDPRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAF 316
             +     +    S+ +   + I    ++Q++ L YL G+  R     P   PN       
Sbjct: 269  IKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYL-GECFRVKLSLPDWYPNVEAAE-- 325

Query: 317  SILRDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSG 373
                  FL N  + +H  +   K FY+  ++ R + A+   + MDD  D + N+ +   G
Sbjct: 326  ------FLLNQCICIHLQSNTDK-FYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPG 378

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ------FIVRDSITVGLERTL 427
            QL  +  ++  +  +  ++    I+L K ++ +   ++       F +   +T   E  L
Sbjct: 379  QLFLMFLKEKMENWLVSIK----IVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLL 434

Query: 428  STGNFDVKRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQ 483
            +TGN   K     +   G+  V  +L+F+  L H   V     F K R  +  R L P  
Sbjct: 435  ATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTT-VRRLLPES 493

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNP 542
            WG LCP  TP+G  CGL+ +L  +  V T       I    C LGV  ++        + 
Sbjct: 494  WGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSD- 552

Query: 543  NSFLVIFNGLILG---KHRRPKCFADVMRKLR--RAGKIGEFVSVFV------NEKQRCV 591
              + V+ +G+++G   K   P+  AD +R+ +  R  +I  ++ V +            +
Sbjct: 553  -CYPVLLDGVMVGWVDKDLAPEV-ADTLRRFKVLREKRIPPWMEVALIPMTGKPSLYPGL 610

Query: 592  YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALI 651
            ++ +   R+ RP+   + G   +    M++L   V  F+D +  G+              
Sbjct: 611  FLFTTPCRLVRPVQNLELGREELI-GTMEQLFMNVAIFEDEVFGGI-------------- 655

Query: 652  ALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                      +TH E+ P ++L VIA  IP+  HNQSPRN YQC MGKQ MG        
Sbjct: 656  ----------STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQN 705

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+ LY L  PQ PL+     +    D    G NA VAV+SY+GYD+EDA+++NK+S +
Sbjct: 706  RSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 765

Query: 772  RGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPN 829
            RGF    V K ++  +++K+     + +       PG  R MQ LDDDGL   G  ++  
Sbjct: 766  RGFAHGSVYKSEFIDLSEKFKQGEDNLVF---GVKPGDPRVMQKLDDDGLPFIGAKLEYG 822

Query: 830  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---L 886
            D Y +          +   TG+    Y  ++        E CVVD + +CS+  G     
Sbjct: 823  DPYYS---------YLNLNTGEGFVVYYKSK--------ENCVVDNIKVCSNDMGSGKFK 865

Query: 887  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 946
            CI   +R  R P +GDKF+SRHGQKG+   +   ED PF+E G+ PD++ NPHGFPSRMT
Sbjct: 866  CICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMT 925

Query: 947  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1006
            +G +IE + GK+    G  H  + F   S     +E   E L   G+++ G + +YSGI+
Sbjct: 926  IGMLIESMAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAGYNFYGTERLYSGIS 984

Query: 1007 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            G  L+A IF+G +YYQ+L+HMV DK   R +G R  +T QP  GR   GG
Sbjct: 985  GMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGG 1034


>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
            discoideum GN=polr1b PE=3 SV=1
          Length = 1130

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 302/1100 (27%), Positives = 507/1100 (46%), Gaps = 152/1100 (13%)

Query: 40   KVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-LRFKDVRIGQPSMTVDGVS 98
            +++ L++ H+DSF++F + GI  +++ ++ +    + + + +RF D+++ +P+  +    
Sbjct: 4    ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEKE 63

Query: 99   EKLNPHMCRLSDMTYAAPILVNI---------EYVQGSHTEKTTMEKN---DVVIGRIPI 146
             KL P+  R +  TY AP    I         E   G+  +    E     +V +GR+PI
Sbjct: 64   IKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLPI 123

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR-VIIDTDKKG 205
            M++S  C L G    +L    E  L+ GGYFI+ G EKV+ +      N  V +      
Sbjct: 124  MVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWT 183

Query: 206  NINASVTSSTETVK---------SKTVIQMEKGKMYLLL----NQFVKKIPIMVVMKAMG 252
            N     T +  T++         +  +  +  G+  L       +F   +P  +++KA+ 
Sbjct: 184  NRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFF--LPATLLLKALK 241

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIE----ECANLDIYTQEKALEYLEGKVK-RSTFGSP 307
              +++E+ + + +    +  L   +E    E    +I TQE+ L+Y+  + + R+ F  P
Sbjct: 242  DTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQF--P 299

Query: 308  P---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            P   N + GR F I + VF     VH  N+  K   + +M++++   +  K   D+ D  
Sbjct: 300  PSFSNIKIGRWF-INQFVF-----VHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSP 353

Query: 365  GNKRLELSGQLVSLL-------------------FEDLFKT---MISEVQKTVDIILSKP 402
              + + L+G +  ++                   FED  K+   +   ++K +D      
Sbjct: 354  AFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIA 413

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
             R S F L+   +R S  + L++T                G   +  +L+F+  + H   
Sbjct: 414  DRFSYF-LATGNLRSSSGIDLQQT---------------SGFCVIADKLNFLRFISHFRS 457

Query: 463  VSP-QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI- 520
            +    F  + K +  R L P  WG  CP  TP+G  CGL+ +L+    VT D  + P + 
Sbjct: 458  IHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ 517

Query: 521  -------SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
                   S     G+  ++++S   ++      +  +G +LGK   PK   ++++ LR  
Sbjct: 518  KAQTLLPSFLAAHGMLPIDMVS---VYQHQYLTITLDGRVLGK-IEPKAGEEMVKMLRYL 573

Query: 574  GKIGEFVSV-------------FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
              +G   S+               N +   + + + G R  RP+V               
Sbjct: 574  RSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVN-------------- 619

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGL 679
                        L  G  E +   E+    IA+   +     TTHIE  P  +  ++A L
Sbjct: 620  ------------LTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLANL 667

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
             P+  +NQSPRN YQC M KQ MG    +   R D+ LY +   Q+P++ T+       +
Sbjct: 668  TPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCN 727

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRI 798
                G NA +AV+S +GYD+EDA+++NKS+ +RGFG   V K +Y  ++Q  +     + 
Sbjct: 728  DYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKT 787

Query: 799  L--RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 856
               RP+      E  + +D DGL   G +IKP + Y     P + R       G+ ++  
Sbjct: 788  FFGRPNTVV--DELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYI 845

Query: 857  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 916
               R  + GP+G T    ++        ++C+K  +R  R P +GDKFSSRHGQKGV   
Sbjct: 846  EDVRIIF-GPNGATRDPSKI-------NNICVK--LRFNRNPVIGDKFSSRHGQKGVLSQ 895

Query: 917  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 976
            +  + + PF+E G+ PD+I+NP+ FPSRMT+G ++E+L GKAG   G+F   +AF +   
Sbjct: 896  LWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAF-QFDE 954

Query: 977  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1036
            +   ++   E L K GF+  G + +YSG TG   +  IF G  YYQ+L+HMV DK   R 
Sbjct: 955  NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRA 1014

Query: 1037 SGPRVMLTRQPTEGRARNGG 1056
             G    LTRQP +GR   GG
Sbjct: 1015 LGKVNALTRQPIKGRKVGGG 1034


>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
            GN=Polr1b PE=1 SV=1
          Length = 1135

 Score =  362 bits (929), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 312/1063 (29%), Positives = 480/1063 (45%), Gaps = 110/1063 (10%)

Query: 41   VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSE 99
            ++ L + H+DSFNY V  G+   V+A         D  I L   D  I  P++    + +
Sbjct: 35   LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94

Query: 100  KLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG 157
            +LN  P  CR    TY   +  +I +      +    +     +G +PIM++S  C LY 
Sbjct: 95   ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQ----FLGXVPIMVKSKLCNLYN 150

Query: 158  KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------I 207
                 L    E   + GGYFII G EKV+ +     +N  I     K            +
Sbjct: 151  LPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGV 210

Query: 208  NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMV 263
            +        +  +  +  +E G   ++LN   +K    +P+   +KA+   SD ++ Q +
Sbjct: 211  SIHCVREEHSAVNMNLHYVENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQEL 268

Query: 264  GRDPRYSALLLPSIEECANLDI----YTQEKALEYL--EGKVKRSTFGSPPNDREGRAFS 317
             +     +    S+ +   + +    +TQ++ L+YL    +VK S     PN  E   F 
Sbjct: 269  IKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEF- 326

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
                +F   + +H  +   K FY+  ++ R + A+   + M+D  D + N+ +   GQL 
Sbjct: 327  ----LFNQCICIHLKSNTDK-FYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLF 381

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
             +  ++  +  +  ++  +D    K + S   +  +  F +   +T   E  L+TGN   
Sbjct: 382  LMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRS 441

Query: 435  KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
            K     M   G+  V  +L+FI  L H   V     F K R  +  R L P  WG LCP 
Sbjct: 442  KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPV 500

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
             TP+G  CGL+ +L  +  V T       I    C LGV  ++        +   + V+ 
Sbjct: 501  HTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLL 558

Query: 550  NGLILG---KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG------RV 600
            +G+++G   K   P+  AD +R+ +            V  ++RC  +  DGG      R 
Sbjct: 559  DGVMVGWVDKELAPEV-ADTLRRFK------------VLRERRCSSL--DGGGPDSHDRK 603

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA--LYEGDA 658
             +P+  A      +  HH  +  +         R     Y     E+  L     +    
Sbjct: 604  AKPVPRA------VPLHHSLQAGEACAEPGAGQRRARWNYGAALHEHCHLRGRGFWWSFH 657

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
            TP        P     VIA  IP+  HNQSPRN YQC MGKQ MG        R D+ LY
Sbjct: 658  TPGAL-----PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
             L  PQ PL+     +    D    G NA VAV+SY+GYD+EDA+++NK+S +RGF    
Sbjct: 713  RLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 779  VVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKE 836
            V K ++  +++K+       +       PG  R MQ LD+DGL   G  ++  D Y    
Sbjct: 773  VYKSEFIDLSEKFKQGDDSLVF---GVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYY--- 826

Query: 837  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIR 893
                  G +   TG+    Y  ++        E CVVD + +CS+  G     C+   +R
Sbjct: 827  ------GYLNLNTGEGFVVYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCVTVR 872

Query: 894  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 953
              R P +GDKF+SRHGQKG+   +   ED PF+E G+ PD++ NPHGFPSRMT+G +IE 
Sbjct: 873  VPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIES 932

Query: 954  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1013
            + GK+    G  H  + F   S     +E   E L   G+++ G + +YSGI+G  L+A 
Sbjct: 933  MAGKSAALHGLCHDATPFIF-SEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEAD 991

Query: 1014 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            IF+G +YYQ+L+HMV DK   R +G R  +T QP  GR   GG
Sbjct: 992  IFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGG 1034


>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
            (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
            FGSC 987) GN=acr-2 PE=1 SV=2
          Length = 1234

 Score =  361 bits (926), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 316/1111 (28%), Positives = 507/1111 (45%), Gaps = 161/1111 (14%)

Query: 41   VRGLVKQHLDSFNYF--------------VNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            ++  V  H++SFN                   G +  +  ++R        + +R+K + 
Sbjct: 39   LQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQGKNKLTIRYKSIE 98

Query: 87   IGQ---PSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIG 142
            + +   P       + ++ P  CR   ++Y   +    EY +      +   E     +G
Sbjct: 99   LQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDGEPHEFVRE-----LG 153

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR---VII 199
            ++PIM++S +C L     A+L    E   + GGYFI+ G EK  LI+  L   R   + I
Sbjct: 154  QMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEK--LIRMLLVNRRNFPLAI 211

Query: 200  DTDKKGNINASVTS---------STETVKSKTVIQMEKGKMYLLL----NQFVKKIPIMV 246
                  N  AS T            ET ++  +  +  G +        N+++  IP+M+
Sbjct: 212  VRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYL--IPVMM 269

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANL--------DIYTQEKALEYLEGK 298
            +MKA+   +D+E+ + +   P+   +    + +   L         +Y++ +   YL G+
Sbjct: 270  IMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRAYL-GQ 328

Query: 299  VKRSTFGSPP--NDRE-GRAFSILRDVFLANV---PVHNNNFRPKCFYVAVMLRRMVEAM 352
              R   G P   +D E G  F  LR + L ++    V       K   +  M R++   +
Sbjct: 329  KFRVVLGVPDTMSDYEVGTEF--LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALV 386

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV--DIILSKPSRSSRFD- 409
                A+D+ D V N+ + L G L   + ++  + +++   +    D +   P+ S + D 
Sbjct: 387  AGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDT 446

Query: 410  -LSQFIV------RDSITVGLERTLSTGNF------DVKRFKMHRKGMTQVLARLSFIGT 456
             L  F +       ++I   LE  LSTGN       D+++      G T V  +L+F+  
Sbjct: 447  FLKDFPIAIFRRANENIGQSLEYFLSTGNLVSPSGLDLQQVS----GFTVVAEKLNFLRF 502

Query: 457  LGHMTRVS-PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            + H   V    F    K +  R L P  WG LCP  TP+G  CGL+ +LA    + T+  
Sbjct: 503  ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESV 562

Query: 516  EGPLIS-LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC--FADVMRKLRR 572
            +   IS L + LGV ++   +  E     S +V+ +G I+G     +C   A+ +R  + 
Sbjct: 563  DASTISRLAFELGVVNISSAATSE-----SVVVMLDGRIVGWCTPEECKSIAETLRYWKV 617

Query: 573  AGKIG-------EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
             G+ G        +V          +Y++S   R+ RP+    K +   KE         
Sbjct: 618  NGENGVPLQLEIGYVPPSNGGSYPGLYMSSQPARMVRPV----KYLPLQKE--------- 664

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP-DTTHIEIEPFTILGVIAGLIPYPH 684
                         +++   E+    IA  E +  P D+TH+E +P  IL ++A + P+  
Sbjct: 665  -------------DFVGPQEQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSD 711

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
             NQSPRN YQC MGKQ MG  A     R D+ +Y L   Q P++        G+D    G
Sbjct: 712  FNQSPRNMYQCQMGKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNG 771

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILR--- 800
             NA VAV+SY+GYD++DA+++NKS+ +RGFG   + K K  ++       ++  I++   
Sbjct: 772  MNAVVAVISYTGYDMDDAMILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFG 831

Query: 801  --PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKES-PLETRGSIMSPTGQTD-SRY 856
              P+ T   + R  +LD+DGL   G +++  DV     +   +  G +++  G T   RY
Sbjct: 832  FAPNSTIRESTR-DMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERY 890

Query: 857  RSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRPELGDKFSSRHGQKGV 913
            +         D E   V+ V +    NG      +   +R  R P +GDKFSSRHGQKGV
Sbjct: 891  K---------DSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGV 941

Query: 914  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG--------RF 965
                    D PFSE GI PD+I+NPH FPSRMT+G  +E L GKAG   G        +F
Sbjct: 942  LSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKF 1001

Query: 966  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1025
               +  G+  GH          L+K G++Y+G + +YSGITG   QA I++G +YYQ+L+
Sbjct: 1002 DEQNTAGDYFGHQ---------LMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLR 1052

Query: 1026 HMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            HMV DK   R +GP V  T QP +GR + GG
Sbjct: 1053 HMVNDKYQVRTTGPVVPTTGQPIKGRKKGGG 1083


>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
            SV=1
          Length = 1203

 Score =  349 bits (896), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 317/1097 (28%), Positives = 511/1097 (46%), Gaps = 155/1097 (14%)

Query: 45   VKQHLDSFNYF--------VNTGIRKI----------VRANDRIVSG--IDPSIFLRFKD 84
            V+ H+ SFN          +N G++ I          + + D I +   +   + +  + 
Sbjct: 42   VQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQ 101

Query: 85   VRIGQPSMTVDGVSE----KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            V I +P M+ DGVS     K+ P   R    +Y   +L+ +++   ++ E+   E  D  
Sbjct: 102  VSIAKP-MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKW-SVNNGEENLFEVRDC- 158

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL-LIQEQLSKNRVII 199
             G +P+ML+S RC L      EL +  E   + GGYFI+ G EK++ ++  Q   + + I
Sbjct: 159  -GGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAI 217

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLN------QFVKK-----IPIMVVM 248
                  N  AS +     ++S    Q  +  +   LN      +F  +     +P+++++
Sbjct: 218  IRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMIL 277

Query: 249  KAMGMESDQEVVQ-MVGRD-------PRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            KA+   SD+E+   ++G D        R   LL    +   +L   TQ   L+YL  K  
Sbjct: 278  KALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQ--VLQYLGDKF- 334

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVH--NNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
            R  F + P+  +     + ++V    V VH   +  + K   +  M+R++   +  + + 
Sbjct: 335  RVVFQASPDQSD---LEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSP 391

Query: 359  DDKDYVGNKRLELSGQLVSLLF----EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            D+ D   ++ + L G L  ++     ++  + +I++V+  ++  ++   +  R+ +S+ +
Sbjct: 392  DNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRY-MSRVL 450

Query: 415  VRDSITVG--LERTLSTGNF------DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS-P 465
            +R +  +G  ++  LSTGN       D+++      G T V  +++F   + H   V   
Sbjct: 451  MRVNENIGSKMQYFLSTGNLVSQSGLDLQQVS----GYTVVAEKINFYRFISHFRMVHRG 506

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI-SLCY 524
             F    K +  R L P  WG LCP  TP+G  CGL+ + A    ++T + +   I S+ Y
Sbjct: 507  SFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILY 566

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLRRAGK------- 575
             LGV      S      P+   V  +G I+G   H + K  AD +R  +  GK       
Sbjct: 567  SLGVAPA---SHTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPID 623

Query: 576  --IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL 633
              IG +V      +   +Y+     R+ RP+    + +   KE       D V  F+   
Sbjct: 624  LEIG-YVPPSTRGQYPGLYLFGGHSRMLRPV----RYLPLDKE-------DIVGPFEQVY 671

Query: 634  REGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
                +   ++  +NN              TH+E  P  IL ++A L P+   NQSPRN Y
Sbjct: 672  MNIAVTPQEI--QNNV------------HTHVEFTPTNILSILANLTPFSDFNQSPRNMY 717

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            QC MGKQ MG        R D+ LY L   Q P++     +  G D    G NA VAV+S
Sbjct: 718  QCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVIS 777

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT---AINQKYANSTSDRILRPDRTGPGAER 810
            Y+GYD++DA+++NKS+ +RGFG   + K      A+N+   +  +      +   P  E 
Sbjct: 778  YTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWP-KEW 836

Query: 811  MQILDDDGLAAPGEIIKPND---VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
            ++ LD+DGL   G  ++  D    Y +                  D+  ++  +TY    
Sbjct: 837  LEKLDEDGLPYIGTYVEEGDPICAYFD------------------DTLNKTKIKTYH--S 876

Query: 868  GETCVVDRVALCSDKNGD------LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 921
             E   ++ V L  D++        + IK+ IR T  P++GDKFSSRHGQKGVC       
Sbjct: 877  SEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRT--PQIGDKFSSRHGQKGVCSRKWPTI 934

Query: 922  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA--FGEPSGHAD 979
            D PFSE GI PD+I+NPH FPSRMT+G  +E L GKAG   G     +   F E    AD
Sbjct: 935  DMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPAD 994

Query: 980  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1039
                  E L K G++Y+G + +YSG TG  L+A I++G +YYQ+L+HMV DK   R +GP
Sbjct: 995  Y---FGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGP 1051

Query: 1040 RVMLTRQPTEGRARNGG 1056
               LT QP +GR R+GG
Sbjct: 1052 VNSLTMQPVKGRKRHGG 1068


>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
            OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
          Length = 1140

 Score =  342 bits (876), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 250/740 (33%), Positives = 383/740 (51%), Gaps = 76/740 (10%)

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +A M+++ +  +  K  +D++D   +KR+E +G+L S LF  L+K    + QKT    + 
Sbjct: 371  LAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYK----KFQKTCITQI- 425

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL-ARLSFIGTLGH 459
               R+ + D+S F+    IT G+  + S+G + V+R    R G++QV+  ++S +     
Sbjct: 426  ---RNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSS 482

Query: 460  MTRVS-PQFE--KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            + RV  P+ +  K  K S  R + PS   ++CP +TPEG+  G V N+A+   VTT    
Sbjct: 483  LRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTTG--- 539

Query: 517  GPLISLCYCLGVED---LELLSGEELHNPNS-FLVIFNGLILGKHRRPKCFADVMRKLRR 572
               IS C  +   D   ++L     + +PN+  L++ NG   G        A+V+ +L  
Sbjct: 540  ---ISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH-----ANVIHRLNF 591

Query: 573  AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF 632
                   +S+ VN     + I SD GR  RP+   DK  +   E         V SF  F
Sbjct: 592  LNDTN--ISIVVNRALGVIEIFSDAGRFIRPIFDLDKICNFEGEI--------VPSFKWF 641

Query: 633  LREGLIEYLDVNEE--NNALIALYEGDATPDTTH--IEIEPFTILGVIAGLIPYPHHNQS 688
            L   LI Y+D+NE   N+  I L +    P+T +  +E++P  + G++AG+IP+P   QS
Sbjct: 642  LDNQLIRYIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQS 701

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
             RN +  +M KQA+G +  + L + +++ + L YPQ+PL+TT   E    ++   G NA 
Sbjct: 702  ARNCFYSSMVKQAIGFVPCHNL-KTETVSHTLNYPQKPLVTTSFAEYNQLNEYPNGINAI 760

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            VA+  Y+GY+ ED+I++NKSS+DRG    I    +TA  +K      +RI  P      +
Sbjct: 761  VAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTA-QEKKNGIIEERIEIP------S 813

Query: 809  ERMQILD-DDGLAAPGEII------KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 861
              ++I D + GL  P  I+      K  DV I K +        +    Q +    S+  
Sbjct: 814  NAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVT--------IKNKNQDEKLVDSSVI 865

Query: 862  TYKGPDGETCVVDRVALCSDKNGDLC--IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 919
               G +G    VDR+    D   D C  +K +I   R PE+GDKF S   QKG CG I  
Sbjct: 866  VQHGEEG---YVDRIV---DNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFP 919

Query: 920  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV--SCGRFHYGSAFGEPSGH 977
            QED PF+  G+ PD+I+NP+  PSRMT+ ++I  + GK        RF  G++F E S  
Sbjct: 920  QEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNGNSFQENSN- 978

Query: 978  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1037
               ++ +   L  +GF  +G +++YSG TG  +Q+ IFMGP YY +LKHMV DKMHAR  
Sbjct: 979  -TILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSH 1037

Query: 1038 GPRVMLTRQPTEGRARNGGF 1057
            G    L RQP  GR++ GG 
Sbjct: 1038 GQVTTLHRQPNCGRSQGGGL 1057



 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 13/256 (5%)

Query: 14  QLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG 73
           QL  K KL   + S  ++ +++ ++ K  GLVK  +++FN+F++ G++ I+     I   
Sbjct: 3   QLNQKTKLDKHLSSD-NRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQ 61

Query: 74  IDPSIFLRFKDVRIGQPSMTVDGVS-EKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEK 131
              +  L+F ++ +  PS+  D  +   L P   R  D++Y   + VN IE V+    + 
Sbjct: 62  SHDNYSLKFTNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKP 121

Query: 132 TTM-EKNDVVIGRIPIMLRSCRCVLYGKDEAELARL-GECPLDPGGYFIIKGTEKVLLIQ 189
             + E+  V I +IPIML S  C L      E  ++ G    D GGYFII G E+VL+ Q
Sbjct: 122 PQISEQYRVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQ 181

Query: 190 EQLSKNR---VIIDTDKKGNINASVTSST--ETVKSKTV-IQMEKGKMY--LLLNQFVKK 241
            + + N+    +  T +K ++      S   ET  S +V ++M K K+   L L + +  
Sbjct: 182 VRKAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQVKMIKNKIMVSLKLKRKLID 241

Query: 242 IPIMVVMKAMGMESDQ 257
           IP+ +V K +G   DQ
Sbjct: 242 IPVGIVFKCLGYNPDQ 257


>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
            ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
            GN=RPA2 PE=3 SV=2
          Length = 1196

 Score =  341 bits (875), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 301/1057 (28%), Positives = 488/1057 (46%), Gaps = 136/1057 (12%)

Query: 65   RANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVS----EKLNPHMCRLSDMTYAAPILVN 120
            +A+D   + +   + L    V + +P M+ DGV+      + P   R    TY   +L+ 
Sbjct: 76   KASDENPNYLGNKLALSVTQVSLTKP-MSNDGVTAAAERNVFPAEARKRLTTYRGKLLLK 134

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            + +   +  E+T  E  D   G +P+ML+S RC L+     EL    E   + GGYFI+ 
Sbjct: 135  LNW-SVNDGEETFSEVRDC--GPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVN 191

Query: 181  GTEKV--LLIQEQLSKNRVII--------DTDKKGNINASVTSSTETVKSKTVIQMEKGK 230
            G EK+  +LI ++ +    II         +     +        +T ++  +  +  G+
Sbjct: 192  GIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQ 251

Query: 231  MYLLL----NQFVKKIPIMVVMKAMGMESDQEVVQ-MVGRDPRYSAL-----LLPSIEEC 280
            +        N+++  +P+++++KA+   SD+E+   +VG D   S L     LL    + 
Sbjct: 252  VTFRFSWRKNEYL--VPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKK 309

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                +  + + L+YL  K +     SP          +LR + L ++   N +   K   
Sbjct: 310  RFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTD---KSNM 366

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL----FEDLFKTMISEVQKTVD 396
            +  M+R++   +  +   D+ D   ++ + L G L  ++     E+  + +  ++Q  V+
Sbjct: 367  LMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVN 426

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVG--LERTLSTGNF------DVKRFKMHRKGMTQVL 448
              +    +  ++ +++ + R +  +G  L+  LSTGN       D+++      G T V 
Sbjct: 427  RGMPVDFKDRKY-MTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVS----GYTVVA 481

Query: 449  ARLSFIGTLGHMTRVS-PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALM 507
             +++F   + H   V    F    K +  R L P  WG LCP  TP+G  CGL+ + A  
Sbjct: 482  EKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHK 541

Query: 508  THVTTDEEEGPLI-SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFA 564
              ++T + +   I +L Y LGV     ++      P+   V  +G I+G   H + +  A
Sbjct: 542  CKISTTQSDVSKIPTLLYSLGVSPAAHVTAA---GPSLCCVQLDGKIVGWCSHEQGRIVA 598

Query: 565  DVMRKLRRAGK---------IGEFVSVFVNEKQRCVYIASDGGRVCRPL--VIADKGISR 613
            D +R  +  GK         IG +V      +   +Y+     R+ RP+  +  DK    
Sbjct: 599  DTLRYWKVEGKTDGLPLDLEIG-YVPASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQ--- 654

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
                      D V  F+    +  +   ++  +NN              TH+E  P  IL
Sbjct: 655  ----------DIVGPFEQVYMDIAVTPEEI--QNNV------------HTHVEFSPTNIL 690

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
             ++A L P+   NQSPRN YQC MGKQ MG        R D+ LY L   Q P++     
Sbjct: 691  SILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLY 750

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            +  G D    G NA VAV+SY+GYD++DA+++NKS+ +RGF    V K    I+   +  
Sbjct: 751  DDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKT-EKIDLSLSRG 809

Query: 794  TSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPND---VYINKESPLETRGSIMS 847
              D + +    G      E ++ LD+DGL   G  ++  D    Y +             
Sbjct: 810  RGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFD------------- 856

Query: 848  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD------LCIKFLIRHTRRPELG 901
                 D+  ++  +TY     E   ++ V L  D++        + IK+ IR  R P++G
Sbjct: 857  -----DTLNKTKIKTYHS--SEPAYIEEVTLIGDESNKFQELQYITIKYRIR--RVPQIG 907

Query: 902  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 961
            DKFSSRHGQKGVC       D PFSE GI PD+I+NPH FPSRMT+G  +E L GKAG  
Sbjct: 908  DKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGAL 967

Query: 962  CGRFHYGS--AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1019
             G     +   F E    AD      + L+K G++Y+G + +YSG TG  L+A I++G +
Sbjct: 968  HGIAQDATPWTFSEEDTPADY---FGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVV 1024

Query: 1020 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            YYQ+L+HMV DK   R +GP   LT QP +GR R+GG
Sbjct: 1025 YYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGG 1061


>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
            GN=RpI135 PE=2 SV=2
          Length = 1129

 Score =  334 bits (857), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 277/1075 (25%), Positives = 480/1075 (44%), Gaps = 118/1075 (10%)

Query: 31   KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVR--ANDRIVSGIDPSIFLRFKDVR 86
            +F+ +P+ L   +  L   H+DSF+  +  G+    +    +  +S     I ++ + + 
Sbjct: 20   EFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIW 79

Query: 87   IGQPSM---TVDGVSEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIG 142
            I +P +    +D  + ++ P   R   ++Y+    V + + V G       M+     +G
Sbjct: 80   IAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMD-----LG 134

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII--- 199
             +PIMLRS  C L      E+ + GE   + GG F+I+G EK++ +     +N  I    
Sbjct: 135  EVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKR 194

Query: 200  -DTDKKGNINASVTSSTETVK------SKTVIQMEKGKMYLLLNQF--VKKIPIMVVMKA 250
                 +G   + +    +TV+      S  V  +  G    + +    +  +P+ +++K 
Sbjct: 195  SSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKC 254

Query: 251  MGMESDQEV----VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +   +D+E+    VQ    D  Y + +   + E  N ++YT  +   ++ G + R+ F  
Sbjct: 255  LMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFI-GNLFRARFPE 313

Query: 307  PPN---DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
             P    D +   F ILR+     V +H + +  K   +  M++++ +    K  +++ D 
Sbjct: 314  VPEWQPDDDVTDF-ILRE----RVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368

Query: 364  VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG- 422
               + + L G L      +  ++ +S+V++ +   L+ P       +    +R +  VG 
Sbjct: 369  AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGR 428

Query: 423  -LERTLSTGNFDVKRFK--MHRKG---MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             +E  L+TGN   +     M   G   M + + R+ ++     + R S  +  + + +  
Sbjct: 429  AIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGS--YFTTMRTTEA 486

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L P  WG +CP  TP+G  CGL+ +L L   ++   +   + ++   L    +  LS 
Sbjct: 487  RQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKC--------FADVMRKLRRAGKIGEFVSVFVNEKQ 588
                    ++V  +G  LG   + +         +  +   L +  +IG F+    N + 
Sbjct: 547  RRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIG-FIPFKKNGQF 605

Query: 589  RCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENN 648
              +YIA+   R+ RP+                            L+   +EY+   E+  
Sbjct: 606  PGLYIATGPARMMRPVW--------------------------NLKWKRVEYIGTLEQLY 639

Query: 649  ALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
              IA+   +  PD TTH+E+     +  +A LIP P +NQSPRN YQC MGKQ MG    
Sbjct: 640  MEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCL 699

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   +  + LY L  P  PL      + +  D    G NA VAV+SY+GYD+EDA+++NK
Sbjct: 700  NWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINK 759

Query: 768  SSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEII 826
            ++ +RGF    + K K+  +++K +           R     E ++ LD DGL  PG  +
Sbjct: 760  AAYERGFAYGSIYKTKFLTLDKKSSYFA--------RHPHMPELIKHLDTDGLPHPGSKL 811

Query: 827  ---KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS--D 881
                P   Y + E                     +  +  K  + E C+V+ +      D
Sbjct: 812  SYGSPLYCYFDGEV--------------------ATYKVVKMDEKEDCIVESIRQLGSFD 851

Query: 882  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 941
             +    +   +R  R   +GDKF+SR GQKG+C      ED PF+E G+ PD++ NPHGF
Sbjct: 852  LSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGF 911

Query: 942  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1001
            PSRMT+  MIE + GK     G  +  + F   S     ++   + L   G++Y G + +
Sbjct: 912  PSRMTIAMMIETMAGKGAAIHGNVYDATPF-RFSEENTAIDYFGKMLEAGGYNYYGTERL 970

Query: 1002 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1056
            YSG+ G  + A IF G ++YQ+L+HMV DK   R +G     T QP +GR R GG
Sbjct: 971  YSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGG 1025


>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
            virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
          Length = 1221

 Score =  332 bits (852), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 301/1091 (27%), Positives = 490/1091 (44%), Gaps = 125/1091 (11%)

Query: 44   LVKQHLDSFN-YFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
             V+ H++SF+    N     + R     V G      ++F  VR  +P        EKL 
Sbjct: 97   FVRHHIESFDDMLWNEFPAMVAREKPVSVKGYR----VKFGTVRY-EPPCPDGKPWEKLT 151

Query: 103  PHMCRLSDMTYAAPILVNIEYV--QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
            P M R +D TY +  + ++     +G  T    +E     + +IP+M+ S  C  + + E
Sbjct: 152  PAMARRTDATYHSAAVCDLTVTDPKGLETVYPRLE-----LCKIPVMVGSAVC--WTRTE 204

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKS 220
                  GECP DPGGYFIIKG E+V++   + + ++  +  +  G +    + + ET + 
Sbjct: 205  GS-PLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNGDGWLCEFRSVNRET-RQ 262

Query: 221  KTVIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG------------- 264
              ++Q +   + K+   L    + +P+ +V KA+G ++ +E V M G             
Sbjct: 263  TVLVQAKTDCRRKLEFSLPYIKQYVPVGLVFKALG-KTAREAVAMCGLGSFLGDEVSCRT 321

Query: 265  -RDPRYSALLLPSI-----EECANLDIYTQEKALEY---LEG--KVKRSTFGSPPNDR-- 311
                  +ALL+        +  A+L  +  +    Y    EG  + K +   S   DR  
Sbjct: 322  VHHQSMAALLMEQHASAPEDPVADLAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNA 381

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +G     +R V    + +H  +      ++  M++RM +A        D+D + NKR++ 
Sbjct: 382  KGSKEDYVRHVLAGEIFLHGGD---AAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDA 438

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS---ITVGLERTLS 428
            +G L++ L + L K  +    K         S   + +L  + V  +   +T  L    +
Sbjct: 439  TGPLIAFLLDGLLKQYVKLFVK---------SAGCQKNLCPYTVLQNSMVMTNSLHMCFA 489

Query: 429  TGNFDVKRF---KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            TGN+ VKR       R G++QVL+  ++   + H+ R+        K    R L  S +G
Sbjct: 490  TGNWTVKRLGPPSYVRVGVSQVLSNNNYGARVSHLRRIMHAVSFRGKNIRMRQLHSSHYG 549

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC--------YCLGVEDLELLSGE 537
             LCP +TPEGE  G+V N+A     + +     +++          +  G       SG 
Sbjct: 550  FLCPYETPEGEKVGIVLNMAEGAGFSLETPREVVLATVRLGKGLPGFFEGAPARLAWSGA 609

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
                  S  V  +G++ G    P  F      +R A      VSV   + +R +++    
Sbjct: 610  A----GSASVDVDGVLCGVTGDPVGF------VREARLCLPGVSVVWKKVEREIHLLGCQ 659

Query: 598  GRVCR----PLVIADKGISRIKEHHMKEL-LDGVRSFDDFLREGLIEYLDVNEENNALIA 652
            GR  R    P  I   G         +++ +D   S            + V  +  ++ +
Sbjct: 660  GRFVRRVLDPEGIRGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCS 719

Query: 653  LYEGD-ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
            L +G+ A P  + I      +   ++ +IP+  H QSPRN YQ  MGKQA+G  A N   
Sbjct: 720  LGDGEYADPPASEI------LTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSD 773

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+ L+ L YPQ+ L+ +R+++ +G+D++  G    VA+M+  G++ ED++V+N SSLD
Sbjct: 774  RYDATLHRLDYPQKSLVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLD 833

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAP---GEIIK 827
            RG   C+  +  +  +++     S+ +  PD      E    +L DDG+  P   G + +
Sbjct: 834  RGLFSCVTYRTVSCADKRRTKYDSEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALAR 893

Query: 828  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG-------PDG------------ 868
              +           + +   P G  D+ +  A     G       P G            
Sbjct: 894  RVEGKRKAAKRPAGQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGPGGNPMRRDVSLTVK 953

Query: 869  --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 926
              E   +DRV +  D +G   +K  +R  R PE+GDKF+S   QKG CG ++ QED PF 
Sbjct: 954  QSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFD 1013

Query: 927  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 986
            + G+ PDLI+NPH FPSRMTV  ++++  G A    G+ +  +AF       D V  I+E
Sbjct: 1014 KDGVVPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGKTYDATAFER----EDVVRDIAE 1069

Query: 987  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1046
               + G       +++SG TG  L   IFM P  YQ+LKHMV  KMH+R  GP   LTRQ
Sbjct: 1070 AAKEAGID-CWDSVLHSGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQ 1128

Query: 1047 PTEGRARNGGF 1057
            P  GR+R GG 
Sbjct: 1129 PVAGRSREGGI 1139


>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
            (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
          Length = 1242

 Score =  293 bits (751), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 293/1151 (25%), Positives = 497/1151 (43%), Gaps = 151/1151 (13%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
             D    +   +   GL+  ++ SF+  ++ GI +IV+          + R  + ID    
Sbjct: 24   ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83

Query: 77   --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
               I   F DV I +P         K+N  P+  RL  ++Y+ P+ +  E +  +H    
Sbjct: 84   SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143

Query: 133  TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
              E     I        PIM  S RC  Y   +     +GE P +PGGYFI +G E V+ 
Sbjct: 144  RQEVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203

Query: 188  IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
            + E +  N + I   T ++GN   I     S    + E      +  M  G + + +N  
Sbjct: 204  LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263

Query: 237  QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
            +F K +IP  ++ +  GM  D  +++ V  D   ++ +   + E     I+         
Sbjct: 264  KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVSDPIFQPV 323

Query: 287  ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
                 +EK +++L  KV +     S + S  N  +    R  +IL  + L ++    +  
Sbjct: 324  QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  ++ +++ +++  ++N     D+D    KR+  SG  ++  F+ +F T  S +   
Sbjct: 384  VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
            ++       +++  DL+Q  + ++ +  L            E+++ +GN    V++  + 
Sbjct: 442  INGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLNRSMEQSIISGNKTIMVRQRPIV 501

Query: 441  RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +  TQ L R + + T+  +        T  S Q E++  +   R +  S  G +C   +
Sbjct: 502  NRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMM---RRVHASYPGYICVAQS 558

Query: 493  PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
             + GE  G+ K LA+  +V T    G ++SL   L     ++ L  +S +++       V
Sbjct: 559  ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
              NG  +G        A   R LRR GKI     +++ +     V    D GR+ RPL+I
Sbjct: 616  FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675

Query: 607  ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
             D  I                               +R      K++L G  + +D + +
Sbjct: 676  VDNNIEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQ 735

Query: 636  GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
            G+ E++   E  N L+A        ++ D T   TH+++ P  ILG+ A + PY +  Q 
Sbjct: 736  GICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
             R TY+   G+Q  G   F+   R+D   +   Y + PL+ T     V    +  G N  
Sbjct: 795  ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
            VA M Y GY+ ED++++++S +DRG F      ++   +     +      L      PG
Sbjct: 851  VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910

Query: 808  AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
            A   +++D  G    G ++K  D+ I         G +    G+ D   +   ++     
Sbjct: 911  ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959

Query: 868  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
             E  VVD V      N ++     +R+ R   +GDK SSR G KG+    +   D PF+E
Sbjct: 960  DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019

Query: 928  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 987
             G+ PDLI+NPH  PSRMT G+MIE   G A    G    G+AF   +     V+ +SE 
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPIN-----VQLLSER 1074

Query: 988  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS-GPRVMLTRQ 1046
            L + G  +NG   +++G TG    A IF+GP Y+Q+L+  VLD  +A  S GP   LT Q
Sbjct: 1075 LAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQ 1134

Query: 1047 PTEGRARNGGF 1057
            P +G+  +GG 
Sbjct: 1135 PLDGKRSHGGL 1145


>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
            (isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
            SV=1
          Length = 1242

 Score =  293 bits (749), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 292/1151 (25%), Positives = 498/1151 (43%), Gaps = 151/1151 (13%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
             D    +   +   GL+  ++ SF+  ++ GI +IV+          + R  + ID    
Sbjct: 24   ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83

Query: 77   --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
               I   F DV I +P         K+N  P+  RL  ++Y+ P+ +  E +  +H    
Sbjct: 84   SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143

Query: 133  TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
              E     I        PIM  S RC  +   +     +GE P +PGGYFI +G E V+ 
Sbjct: 144  RQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203

Query: 188  IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
            + E +  N + I   T ++GN   I     S    + E      +  M  G + + +N  
Sbjct: 204  LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263

Query: 237  QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
            +F K +IP  ++ +  GM  D  +++ V  D   ++L+   + E     I+         
Sbjct: 264  KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPIFQPV 323

Query: 287  ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
                 +EK +++L  KV +     S + S  N  +    R  +IL  + L ++    +  
Sbjct: 324  QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  ++ +++ +++  ++N     D+D    KR+  SG  ++  F+ +F T  S +   
Sbjct: 384  VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
            ++       +++  +L+Q  + ++ +  L            E+++ +GN    V++  + 
Sbjct: 442  INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501

Query: 441  RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +  TQ L R + + T+  +        T  S Q E++  +   R +  S  G +C   +
Sbjct: 502  NRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMM---RRVHASYPGYICVAQS 558

Query: 493  PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
             + GE  G+ K LA+  +V T    G ++SL   L     ++ L  +S +++       V
Sbjct: 559  ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
              NG  +G        A   R LRR GKI     +++ +     V    D GR+ RPL+I
Sbjct: 616  FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675

Query: 607  ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
             D  I                               +R      K++L G  + +D + +
Sbjct: 676  VDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQ 735

Query: 636  GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
            G+ E++   E  N L+A        ++ D T   TH+++ P  ILG+ A + PY +  Q 
Sbjct: 736  GICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
             R TY+   G+Q  G   F+   R+D   +   Y + PL+ T     V    +  G N  
Sbjct: 795  ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
            VA M Y GY+ ED++++++S +DRG F      ++   +     +      L      PG
Sbjct: 851  VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910

Query: 808  AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
            A   +++D  G    G ++K  D+ I         G +    G+ D   +   ++     
Sbjct: 911  ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959

Query: 868  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
             E  VVD V      N ++     +R+ R   +GDK SSR G KG+    +   D PF+E
Sbjct: 960  DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019

Query: 928  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 987
             G+ PDLI+NPH  PSRMT G+MIE   G A    G    G+AF   +     V+ +SE 
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPIN-----VQLLSER 1074

Query: 988  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS-GPRVMLTRQ 1046
            L + G  +NG   +++G TG    A IF+GP Y+Q+L+  VLD  +A  S GP   LT Q
Sbjct: 1075 LAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQ 1134

Query: 1047 PTEGRARNGGF 1057
            P +G+  +GG 
Sbjct: 1135 PLDGKRSHGGL 1145


>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
            (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
            GN=Pret-065 PE=3 SV=1
          Length = 1242

 Score =  293 bits (749), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 292/1151 (25%), Positives = 498/1151 (43%), Gaps = 151/1151 (13%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
             D    +   +   GL+  ++ SF+  ++ GI +IV+          + R  + ID    
Sbjct: 24   ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83

Query: 77   --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
               I   F DV I +P         K+N  P+  RL  ++Y+ P+ +  E +  +H    
Sbjct: 84   SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143

Query: 133  TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
              E     I        PIM  S RC  +   +     +GE P +PGGYFI +G E V+ 
Sbjct: 144  RQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203

Query: 188  IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
            + E +  N + I   T ++GN   I     S    + E      +  M  G + + +N  
Sbjct: 204  LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263

Query: 237  QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
            +F K +IP  ++ +  GM  D  +++ V  D   ++L+   + E     I+         
Sbjct: 264  KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPIFQPV 323

Query: 287  ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
                 +EK +++L  KV +     S + S  N  +    R  +IL  + L ++    +  
Sbjct: 324  QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  ++ +++ +++  ++N     D+D    KR+  SG  ++  F+ +F T  S +   
Sbjct: 384  VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
            ++       +++  +L+Q  + ++ +  L            E+++ +GN    V++  + 
Sbjct: 442  INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501

Query: 441  RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +  TQ L R + + T+  +        T  S Q E++  +   R +  S  G +C   +
Sbjct: 502  NRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMM---RRVHASYPGYICVAQS 558

Query: 493  PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
             + GE  G+ K LA+  +V T    G ++SL   L     ++ L  +S +++       V
Sbjct: 559  ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
              NG  +G        A   R LRR GKI     +++ +     V    D GR+ RPL+I
Sbjct: 616  FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675

Query: 607  ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
             D  I                               +R      K++L G  + +D + +
Sbjct: 676  VDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQ 735

Query: 636  GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
            G+ E++   E  N L+A        ++ D T   TH+++ P  ILG+ A + PY +  Q 
Sbjct: 736  GICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
             R TY+   G+Q  G   F+   R+D   +   Y + PL+ T     V    +  G N  
Sbjct: 795  ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
            VA M Y GY+ ED++++++S +DRG F      ++   +     +      L      PG
Sbjct: 851  VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910

Query: 808  AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
            A   +++D  G    G ++K  D+ I         G +    G+ D   +   ++     
Sbjct: 911  ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959

Query: 868  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
             E  VVD V      N ++     +R+ R   +GDK SSR G KG+    +   D PF+E
Sbjct: 960  DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019

Query: 928  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 987
             G+ PDLI+NPH  PSRMT G+MIE   G A    G    G+AF   +     V+ +SE 
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPIN-----VQLLSER 1074

Query: 988  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS-GPRVMLTRQ 1046
            L + G  +NG   +++G TG    A IF+GP Y+Q+L+  VLD  +A  S GP   LT Q
Sbjct: 1075 LAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQ 1134

Query: 1047 PTEGRARNGGF 1057
            P +G+  +GG 
Sbjct: 1135 PLDGKRSHGGL 1145


>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
            (isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
          Length = 1242

 Score =  291 bits (746), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 292/1151 (25%), Positives = 498/1151 (43%), Gaps = 151/1151 (13%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
             D    +   +   GL+  ++ SF+  ++ GI +IV+          + R  + ID    
Sbjct: 24   ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83

Query: 77   --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
               I   F DV I +P         K+N  P+  RLS ++Y+ P+ +  E +  +H    
Sbjct: 84   SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGPVKLAAEVILTAHYSNG 143

Query: 133  TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
              E     I        PIM  S RC  +   +     +GE P +PGGYFI +G E V+ 
Sbjct: 144  RQEVKRASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203

Query: 188  IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
            + E +  N + I   T ++GN   I     S    + E      +  M  G + + +N  
Sbjct: 204  LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263

Query: 237  QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
            +F K +IP  ++ +  GM  D  +++ V  D   ++ +   + E     I+         
Sbjct: 264  KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVSDPIFQPV 323

Query: 287  ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
                 +EK +++L  KV +     S + S  N  +    R  +IL  + L ++    +  
Sbjct: 324  QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  ++ +++ +++  ++N     D+D    KR+  SG  ++  F+ +F T  S +   
Sbjct: 384  VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
            ++       +++  +L+Q  + ++ +  L            E+++ +GN    V++  + 
Sbjct: 442  INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501

Query: 441  RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +  TQ L R + + T+  +        T  S Q E++  +   R +  S  G +C   +
Sbjct: 502  NRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMM---RRVHASYPGYICVAQS 558

Query: 493  PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
             + GE  G+ K LA+  +V T    G ++SL   L     ++ L  +S +++       V
Sbjct: 559  ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
              NG  +G        A   R LRR GKI     +++ +     V    D GR+ RPL+I
Sbjct: 616  FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675

Query: 607  ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
             D  I                               +R      K +L G  + +D + +
Sbjct: 676  VDNNIEKYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTSQMAKAILAGTLTLEDLVAQ 735

Query: 636  GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
            G+ E++   E  N L+A        ++ D T   TH+++ P +ILG+ A + PY +  Q 
Sbjct: 736  GICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQSILGLAALVSPYANCTQP 794

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
             R TY+   G+Q  G   F+   R+D   +   Y + PL+ T     V    +  G N  
Sbjct: 795  ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
            VA M Y GY+ ED++++++S +DRG F      ++   +     +      L      PG
Sbjct: 851  VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910

Query: 808  AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
            A   +++D  G    G ++K  D+ I         G +    G+ D   +   ++     
Sbjct: 911  ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959

Query: 868  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
             E  VVD V      N ++     +R+ R   +GDK SSR G KG+    +   D PF+E
Sbjct: 960  DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019

Query: 928  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 987
             G+ PDLI+NPH  PSRMT G+MIE   G A    G    G+AF   +     V+ +SE 
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPIN-----VQLLSER 1074

Query: 988  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS-GPRVMLTRQ 1046
            L + G  +NG   +++G TG    A IF+GP Y+Q+L+  VLD  +A  S GP   LT Q
Sbjct: 1075 LAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQ 1134

Query: 1047 PTEGRARNGGF 1057
            P +G+  +GG 
Sbjct: 1135 PLDGKRSHGGL 1145


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,878,564
Number of Sequences: 539616
Number of extensions: 17820986
Number of successful extensions: 44309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36659
Number of HSP's gapped (non-prelim): 4973
length of query: 1058
length of database: 191,569,459
effective HSP length: 128
effective length of query: 930
effective length of database: 122,498,611
effective search space: 113923708230
effective search space used: 113923708230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)